Query 009471
Match_columns 534
No_of_seqs 389 out of 2186
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 100.0 8E-36 2.7E-40 315.0 31.8 358 153-514 47-477 (584)
2 1xm9_A Plakophilin 1; armadill 100.0 7.6E-36 2.6E-40 312.7 29.1 357 155-514 3-450 (457)
3 3ul1_B Importin subunit alpha- 100.0 6.9E-35 2.4E-39 309.9 32.8 359 153-514 56-431 (510)
4 3now_A UNC-45 protein, SD10334 100.0 8.4E-35 2.9E-39 317.0 31.8 362 152-514 375-783 (810)
5 3tpo_A Importin subunit alpha- 100.0 9.9E-34 3.4E-38 302.5 35.5 360 152-514 74-450 (529)
6 3tpo_A Importin subunit alpha- 100.0 1.8E-33 6.2E-38 300.5 36.7 358 153-512 118-496 (529)
7 3ul1_B Importin subunit alpha- 100.0 1.5E-33 5E-38 299.7 34.9 359 153-513 99-478 (510)
8 4b8j_A Importin subunit alpha- 100.0 8.4E-33 2.9E-37 295.5 38.6 363 152-517 72-447 (528)
9 3nmz_A APC variant protein; pr 100.0 1.3E-33 4.6E-38 291.8 27.9 357 151-514 29-451 (458)
10 3now_A UNC-45 protein, SD10334 100.0 1.8E-33 6.3E-38 306.5 29.4 368 154-523 330-747 (810)
11 3nmz_A APC variant protein; pr 100.0 1.8E-33 6.3E-38 290.8 27.4 318 154-472 70-452 (458)
12 1wa5_B Importin alpha subunit; 100.0 1.5E-31 5.1E-36 286.0 39.6 363 152-517 85-461 (530)
13 4b8j_A Importin subunit alpha- 100.0 5.6E-32 1.9E-36 289.1 35.5 360 153-514 116-497 (528)
14 1wa5_B Importin alpha subunit; 100.0 3E-31 1E-35 283.7 35.0 360 153-514 129-511 (530)
15 3l6x_A Catenin delta-1; cateni 100.0 1.1E-31 3.6E-36 283.6 30.8 337 173-514 27-433 (584)
16 2jdq_A Importin alpha-1 subuni 100.0 4.8E-31 1.6E-35 275.6 33.4 357 154-513 64-443 (450)
17 1jdh_A Beta-catenin; beta-cate 100.0 1.9E-30 6.6E-35 276.8 37.7 357 154-512 101-529 (529)
18 1xm9_A Plakophilin 1; armadill 100.0 8.6E-31 2.9E-35 274.3 32.2 314 197-514 3-407 (457)
19 2jdq_A Importin alpha-1 subuni 100.0 2.3E-30 7.9E-35 270.4 35.3 356 156-516 22-393 (450)
20 2z6h_A Catenin beta-1, beta-ca 100.0 8.8E-30 3E-34 278.6 39.2 359 154-514 98-528 (644)
21 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-30 5.7E-35 277.3 32.6 358 153-514 16-386 (529)
22 2z6h_A Catenin beta-1, beta-ca 100.0 7.8E-30 2.7E-34 278.9 33.1 358 154-514 14-383 (644)
23 2z6g_A B-catenin; FULL-length, 100.0 4.7E-29 1.6E-33 277.5 37.2 359 154-514 234-664 (780)
24 3nmw_A APC variant protein; AR 100.0 5E-30 1.7E-34 257.7 26.5 264 210-474 46-338 (354)
25 2z6g_A B-catenin; FULL-length, 100.0 3.9E-28 1.3E-32 270.1 32.6 359 153-514 149-519 (780)
26 3nmw_A APC variant protein; AR 100.0 7.5E-29 2.6E-33 249.1 23.8 260 170-430 48-335 (354)
27 4hxt_A De novo protein OR329; 99.9 3.7E-25 1.2E-29 212.2 24.8 234 196-430 2-242 (252)
28 4db8_A Armadillo-repeat protei 99.9 2.6E-25 9E-30 213.7 23.6 236 153-389 11-251 (252)
29 4hxt_A De novo protein OR329; 99.9 9.3E-25 3.2E-29 209.4 25.4 234 155-389 3-241 (252)
30 4db8_A Armadillo-repeat protei 99.9 8.3E-25 2.8E-29 210.2 21.0 233 196-429 12-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 4.3E-23 1.5E-27 220.8 24.2 353 153-506 333-770 (778)
32 3opb_A SWI5-dependent HO expre 99.9 2.1E-22 7.3E-27 215.5 29.0 360 155-522 256-692 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-22 5.2E-27 189.7 16.9 198 152-350 6-230 (233)
34 3tt9_A Plakophilin-2; cell adh 99.9 3.7E-22 1.3E-26 187.1 17.5 193 196-389 8-229 (233)
35 4db6_A Armadillo repeat protei 99.9 2.4E-21 8.3E-26 180.6 22.1 195 194-389 10-209 (210)
36 4db6_A Armadillo repeat protei 99.9 3.6E-21 1.2E-25 179.4 23.2 196 153-349 11-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.9 1E-19 3.5E-24 177.9 24.0 199 155-355 29-244 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 1.3E-19 4.3E-24 177.2 20.7 221 292-513 54-287 (296)
39 3grl_A General vesicular trans 99.7 1.7E-14 5.9E-19 150.7 31.3 365 152-521 19-460 (651)
40 3grl_A General vesicular trans 99.6 9E-13 3.1E-17 137.9 31.8 326 154-479 60-458 (651)
41 4fdd_A Transportin-1; heat rep 99.6 3.7E-14 1.3E-18 159.8 20.2 354 153-514 214-700 (852)
42 1oyz_A Hypothetical protein YI 99.6 1.7E-13 5.7E-18 133.4 20.9 256 193-509 20-278 (280)
43 1oyz_A Hypothetical protein YI 99.5 1.5E-12 5.3E-17 126.5 25.9 251 154-466 23-278 (280)
44 4fdd_A Transportin-1; heat rep 99.5 3.8E-14 1.3E-18 159.7 15.3 349 154-513 128-512 (852)
45 1b3u_A Protein (protein phosph 99.5 4.9E-13 1.7E-17 143.7 22.9 341 154-514 164-510 (588)
46 1b3u_A Protein (protein phosph 99.5 2.3E-13 8E-18 146.2 20.3 344 153-514 202-549 (588)
47 2vgl_B AP-2 complex subunit be 99.5 6.2E-12 2.1E-16 135.5 23.7 339 153-522 120-469 (591)
48 2vgl_B AP-2 complex subunit be 99.3 6E-11 2.1E-15 127.8 19.9 253 154-428 49-310 (591)
49 3ltm_A Alpha-REP4; protein eng 99.3 7E-11 2.4E-15 109.6 17.6 186 194-430 17-204 (211)
50 3ltj_A Alpharep-4; protein eng 99.3 1.1E-10 3.8E-15 107.3 17.6 183 195-428 13-197 (201)
51 1w63_A Adapter-related protein 99.3 1.2E-09 4E-14 118.2 28.4 323 153-514 69-415 (618)
52 3ltm_A Alpha-REP4; protein eng 99.3 9.4E-11 3.2E-15 108.7 16.9 187 236-473 18-206 (211)
53 2bpt_A Importin beta-1 subunit 99.3 2.2E-10 7.5E-15 128.8 22.9 341 155-514 325-712 (861)
54 1w63_A Adapter-related protein 99.3 2.1E-09 7E-14 116.3 28.1 325 152-514 32-380 (618)
55 3ltj_A Alpharep-4; protein eng 99.2 3.4E-10 1.2E-14 104.0 17.3 182 237-469 14-197 (201)
56 2bpt_A Importin beta-1 subunit 99.2 8.1E-10 2.8E-14 124.2 22.8 347 156-514 371-764 (861)
57 1ibr_B P95, importin beta-1 su 99.2 9.8E-11 3.3E-15 121.7 13.1 349 155-514 36-438 (462)
58 1qgr_A Protein (importin beta 99.2 1.5E-09 5.3E-14 122.1 23.4 350 154-514 128-538 (876)
59 1ibr_B P95, importin beta-1 su 99.2 1.1E-10 3.8E-15 121.3 11.4 304 157-471 93-438 (462)
60 1qgr_A Protein (importin beta 99.1 1.4E-09 4.9E-14 122.4 20.1 346 154-514 321-723 (876)
61 1u6g_C TIP120 protein, CAND1; 99.1 5.5E-10 1.9E-14 130.7 15.5 344 154-513 6-403 (1230)
62 2vgl_A Adaptor protein complex 99.1 8.4E-08 2.9E-12 103.5 31.0 328 152-514 33-399 (621)
63 4gmo_A Putative uncharacterize 99.0 2.4E-09 8.3E-14 117.0 15.1 192 197-388 35-257 (684)
64 2vgl_A Adaptor protein complex 99.0 6.4E-08 2.2E-12 104.4 24.6 328 154-514 74-434 (621)
65 4gmo_A Putative uncharacterize 98.9 3.7E-09 1.3E-13 115.6 12.6 190 238-428 35-257 (684)
66 1u6g_C TIP120 protein, CAND1; 98.9 4.7E-08 1.6E-12 114.3 21.9 346 152-514 46-464 (1230)
67 1ho8_A Vacuolar ATP synthase s 98.8 1.7E-06 5.8E-11 87.6 25.9 315 154-470 77-476 (480)
68 2qk2_A LP04448P; mini spindles 98.6 2.7E-07 9.1E-12 87.3 11.6 182 158-349 19-205 (242)
69 2iw3_A Elongation factor 3A; a 98.6 1.5E-05 5E-10 88.7 26.3 292 155-469 15-323 (986)
70 3b2a_A TON_1937, putative unch 98.5 1.9E-06 6.5E-11 78.1 15.0 185 155-350 34-219 (265)
71 3tjz_B Coatomer subunit gamma; 98.5 5.8E-06 2E-10 81.8 19.7 304 167-509 40-349 (355)
72 4ady_A RPN2, 26S proteasome re 98.4 6E-05 2.1E-09 82.9 26.2 296 165-511 406-717 (963)
73 2db0_A 253AA long hypothetical 98.3 0.00066 2.3E-08 59.1 24.5 211 236-471 31-247 (253)
74 1te4_A Conserved protein MTH18 98.2 1.1E-07 3.7E-12 80.8 -0.4 120 195-346 11-130 (131)
75 2qk1_A Protein STU2; STU2P, XM 98.2 4.5E-06 1.5E-10 79.1 10.4 183 159-349 21-220 (249)
76 1ho8_A Vacuolar ATP synthase s 98.2 0.00028 9.7E-09 71.5 23.7 314 193-512 74-475 (480)
77 2qk2_A LP04448P; mini spindles 98.2 1.7E-05 5.8E-10 74.7 14.1 181 199-389 18-205 (242)
78 4ady_A RPN2, 26S proteasome re 98.2 0.00058 2E-08 75.2 27.4 288 169-514 373-677 (963)
79 3tjz_B Coatomer subunit gamma; 98.2 3.9E-05 1.3E-09 75.9 16.3 275 154-465 68-348 (355)
80 3b2a_A TON_1937, putative unch 98.1 1.8E-05 6.3E-10 71.7 11.7 184 279-472 34-220 (265)
81 1te4_A Conserved protein MTH18 98.1 2.8E-07 9.4E-12 78.2 -0.7 119 155-305 13-131 (131)
82 2db0_A 253AA long hypothetical 98.1 0.00059 2E-08 59.4 19.1 211 277-511 31-244 (253)
83 3dad_A FH1/FH2 domain-containi 98.0 0.00018 6E-09 69.5 17.2 176 156-331 120-317 (339)
84 3dad_A FH1/FH2 domain-containi 97.7 0.00098 3.4E-08 64.3 16.1 176 283-459 123-325 (339)
85 2qk1_A Protein STU2; STU2P, XM 97.7 0.00023 7.8E-09 67.2 11.3 149 153-307 59-220 (249)
86 2iw3_A Elongation factor 3A; a 97.6 0.009 3.1E-07 66.6 23.7 288 201-511 19-322 (986)
87 1wa5_C Importin alpha RE-expor 97.4 0.011 3.7E-07 67.1 21.8 330 170-512 262-669 (960)
88 1wa5_C Importin alpha RE-expor 97.3 0.027 9.3E-07 63.8 24.5 245 171-426 378-667 (960)
89 2of3_A ZYG-9; multifunctional 97.3 0.0053 1.8E-07 57.8 14.8 176 157-349 49-236 (266)
90 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0012 4E-08 67.5 8.8 235 198-466 176-432 (800)
91 4ffb_C Protein STU2; tubulin f 96.9 0.0065 2.2E-07 58.1 12.2 183 159-349 14-212 (278)
92 2x1g_F Cadmus; transport prote 96.8 0.066 2.2E-06 60.7 20.8 210 208-429 476-722 (971)
93 2fv2_A RCD1 required for cell 96.7 0.039 1.3E-06 50.9 14.5 141 177-317 78-234 (268)
94 2x1g_F Cadmus; transport prote 96.7 0.5 1.7E-05 53.4 27.0 301 196-514 348-723 (971)
95 1upk_A MO25 protein; transfera 96.6 0.079 2.7E-06 51.0 16.7 212 313-526 72-299 (341)
96 2x19_B Importin-13; nuclear tr 96.6 0.39 1.3E-05 54.1 25.5 212 206-428 459-713 (963)
97 3oc3_A Helicase MOT1, MOT1; re 96.5 0.012 4.3E-07 60.1 10.5 245 152-425 172-432 (800)
98 1upk_A MO25 protein; transfera 96.3 0.17 5.7E-06 48.8 16.9 236 273-512 73-334 (341)
99 3ibv_A Exportin-T; karyopherin 96.1 0.099 3.4E-06 59.1 16.7 296 165-471 204-567 (980)
100 3m1i_C Exportin-1; heat repeat 96.1 0.6 2.1E-05 53.2 23.5 295 165-471 206-570 (1049)
101 1lrv_A LRV, leucine-rich repea 96.0 0.0022 7.4E-08 60.0 2.1 177 186-466 64-242 (244)
102 2fv2_A RCD1 required for cell 95.9 0.5 1.7E-05 43.5 16.9 180 335-514 16-225 (268)
103 3a6p_A Exportin-5; exportin-5, 95.8 0.84 2.9E-05 52.8 23.0 298 154-471 11-381 (1204)
104 2x19_B Importin-13; nuclear tr 95.7 0.87 3E-05 51.2 22.1 330 165-514 460-847 (963)
105 4ffb_C Protein STU2; tubulin f 95.4 0.058 2E-06 51.4 9.7 181 283-471 14-213 (278)
106 4hat_C Exportin-1; heat repeat 95.4 1.1 3.9E-05 50.6 21.6 294 165-470 206-569 (1023)
107 3m1i_C Exportin-1; heat repeat 95.1 2.6 8.7E-05 48.0 23.4 296 155-470 17-373 (1049)
108 3gjx_A Exportin-1; transport, 95.0 6.4 0.00022 44.6 26.4 293 165-470 218-595 (1073)
109 1lrv_A LRV, leucine-rich repea 94.8 0.021 7E-07 53.3 4.2 56 164-219 60-121 (244)
110 3ebb_A Phospholipase A2-activa 94.6 0.56 1.9E-05 45.0 13.8 160 198-358 105-272 (304)
111 3l9t_A Putative uncharacterize 94.4 2 6.9E-05 39.2 16.1 179 149-358 32-216 (240)
112 3u0r_A Apoptosis inhibitor 5; 94.1 3.4 0.00012 41.8 18.4 122 164-303 38-159 (507)
113 2of3_A ZYG-9; multifunctional 93.4 1.7 5.7E-05 40.7 14.2 174 281-469 49-235 (266)
114 3ibv_A Exportin-T; karyopherin 93.3 9.9 0.00034 42.8 23.0 283 167-469 21-360 (980)
115 3ebb_A Phospholipase A2-activa 93.3 0.63 2.2E-05 44.7 11.5 160 364-523 105-276 (304)
116 3eg5_B Protein diaphanous homo 93.3 7 0.00024 38.7 21.0 174 158-333 70-278 (383)
117 3gjx_A Exportin-1; transport, 92.9 8.4 0.00029 43.7 21.4 219 154-389 28-275 (1073)
118 2f31_A Diaphanous protein homo 92.8 3.5 0.00012 37.8 15.4 156 173-330 20-209 (233)
119 3c2g_A SYS-1 protein; beta-cat 92.6 2.9 9.9E-05 40.2 14.4 109 262-371 267-376 (619)
120 4hat_C Exportin-1; heat repeat 92.2 2.5 8.5E-05 47.9 16.2 218 155-389 17-263 (1023)
121 3u0r_A Apoptosis inhibitor 5; 91.8 12 0.00041 37.8 21.3 241 248-514 39-299 (507)
122 3l9t_A Putative uncharacterize 91.7 4 0.00014 37.2 13.8 141 155-317 71-218 (240)
123 2bnx_A Diaphanous protein homo 91.2 13 0.00043 36.9 21.2 163 173-337 24-220 (386)
124 3eg5_B Protein diaphanous homo 89.9 7.3 0.00025 38.6 15.2 159 271-457 103-281 (383)
125 3c2g_A SYS-1 protein; beta-cat 89.7 4.5 0.00015 39.0 12.5 126 177-304 265-400 (619)
126 2f31_A Diaphanous protein homo 89.6 6.7 0.00023 35.8 13.8 149 310-459 35-217 (233)
127 3qml_C Protein SLS1, nucleotid 89.3 2.9 9.8E-05 39.6 11.0 148 153-306 21-188 (315)
128 1lsh_A Lipovitellin (LV-1N, LV 89.2 29 0.00099 39.3 21.4 196 198-430 358-577 (1056)
129 1lsh_A Lipovitellin (LV-1N, LV 85.8 13 0.00043 42.3 15.8 171 155-353 392-580 (1056)
130 2bnx_A Diaphanous protein homo 83.5 33 0.0011 33.9 15.9 156 273-457 43-219 (386)
131 3ldz_A STAM-1, signal transduc 79.1 2.5 8.5E-05 35.3 5.0 69 401-469 43-113 (140)
132 1mhq_A ADP-ribosylation factor 77.5 3.8 0.00013 34.6 5.7 71 401-471 39-117 (148)
133 3a6p_A Exportin-5; exportin-5, 77.3 81 0.0028 36.2 18.6 251 165-430 58-381 (1204)
134 3g2s_A C-terminal fragment of 77.2 4.1 0.00014 34.4 5.8 70 401-470 49-126 (149)
135 1x5b_A Signal transducing adap 77.0 3.9 0.00013 35.2 5.7 69 401-469 53-124 (163)
136 1x5b_A Signal transducing adap 76.6 9.1 0.00031 32.8 8.0 73 154-226 52-126 (163)
137 3ldz_A STAM-1, signal transduc 75.7 8.4 0.00029 32.1 7.3 72 154-225 42-114 (140)
138 3qml_C Protein SLS1, nucleotid 75.6 14 0.00049 34.9 9.5 144 321-470 24-189 (315)
139 1mhq_A ADP-ribosylation factor 75.3 12 0.00042 31.3 8.3 75 153-227 37-118 (148)
140 1juq_A ADP-ribosylation factor 73.8 5.4 0.00018 34.5 5.8 71 401-471 51-129 (171)
141 1juq_A ADP-ribosylation factor 71.7 12 0.00042 32.2 7.7 74 154-227 50-130 (171)
142 3zyq_A Hepatocyte growth facto 69.1 6.5 0.00022 35.7 5.5 69 401-469 46-117 (226)
143 3g2s_A C-terminal fragment of 69.1 17 0.00059 30.5 7.8 74 154-227 48-128 (149)
144 1dvp_A HRS, hepatocyte growth 61.5 11 0.00037 34.0 5.5 69 401-469 43-114 (220)
145 3o2t_A Symplekin; heat repeat, 57.0 60 0.0021 31.9 10.3 100 156-264 27-127 (386)
146 3zyq_A Hepatocyte growth facto 54.5 29 0.001 31.3 7.1 73 154-226 45-119 (226)
147 3gs3_A Symplekin, LD45768P; he 54.4 1.3E+02 0.0045 27.6 21.2 144 151-304 12-170 (257)
148 1dvp_A HRS, hepatocyte growth 53.2 30 0.001 31.0 7.0 72 154-225 42-115 (220)
149 1elk_A Target of MYB1; superhe 51.3 23 0.00077 30.0 5.5 69 401-469 54-129 (157)
150 1elk_A Target of MYB1; superhe 51.1 51 0.0018 27.8 7.7 72 154-225 53-130 (157)
151 3gae_A Protein DOA1; UFD3, CDC 44.3 13 0.00045 34.3 3.1 136 368-514 62-218 (253)
152 1vdy_A Hypothetical protein (R 34.8 1.2E+02 0.0041 25.0 7.1 71 401-471 50-131 (140)
153 3gae_A Protein DOA1; UFD3, CDC 34.4 38 0.0013 31.1 4.6 131 213-352 71-220 (253)
154 3pst_A Protein DOA1; protein d 29.0 1.9E+02 0.0065 28.7 8.7 134 213-355 243-395 (425)
155 3l3f_X Protein DOA1, DOA1/UFD3 26.6 1.1E+02 0.0037 29.8 6.4 133 213-354 180-331 (362)
156 3pst_A Protein DOA1; protein d 23.3 4.7E+02 0.016 25.8 10.3 135 369-514 235-390 (425)
157 3rru_A TOM1L1 protein; structu 22.2 60 0.002 27.2 3.2 72 401-472 54-132 (152)
158 3o2t_A Symplekin; heat repeat, 21.7 5.6E+02 0.019 24.9 18.6 66 153-223 62-127 (386)
159 1vsy_5 Proteasome activator BL 21.0 3.6E+02 0.012 30.1 10.0 184 152-349 131-365 (997)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8e-36 Score=315.05 Aligned_cols=358 Identities=18% Similarity=0.191 Sum_probs=301.7
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--Cchh
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES--GSCE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~--~~~~ 230 (534)
...++.++..|++++++.+..|+.+|.+++..+++++..+++.|+|++|+++|+++++++|+.|+++|.+|+.. +++|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 44699999999999999999999999999998999999999999999999999999999999999999999984 5699
Q ss_pred HHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc------------------cCC
Q 009471 231 NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------------------TGD 291 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~------------------~~~ 291 (534)
..+++.|+|++|+++|.+ .+..+++.++++|++|+.+++++..+++ ++++.|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999998 5788999999999999999999999885 67999999872 235
Q ss_pred hHHHHHHHHHHHHccCCc-hHHHHHHh-hCcHHHHHHHhhc------CCChhHHHHHHHHHHHHccCChH-------HH-
Q 009471 292 SVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNEN-------LR- 355 (534)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~i~~L~~ll~~------~~~~~v~~~a~~~L~~La~~~~~-------~~- 355 (534)
+.++..|+++|+||+... +.+..+++ .|+++.|+.++++ .+. ..+++|+.+|.||+...+. ..
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-KLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-HHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-HHHHHHHHHHHHhhccccccccchhhhhh
Confidence 789999999999999866 56999988 6778899999974 233 7899999999999974210 00
Q ss_pred -----------------HHHHhcCChHHHHHhhc---CCchHHHHHHHHHHhhcCc------cHHHHHhcCcHHHHHHHH
Q 009471 356 -----------------RSVVSEGGIRSLLAYLD---GPLPQESAVGALRNLVGSV------SQEVLISLGFFPRLVHVL 409 (534)
Q Consensus 356 -----------------~~i~~~g~l~~L~~~L~---~~~~~~~a~~aL~~La~~~------~~~~l~~~~~i~~Lv~lL 409 (534)
+.+.+.++++.|+.++. ++.+++.|+++|+|||... .+..+.+.++++.|+.+|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 11122234556777884 3678999999999998732 122344578899999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC--------ChHHHHHHHHHHHHhcCC-CcchHHHHh
Q 009471 410 KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--------PNSVREVAAQAISSLVTL-PQNCREVKR 480 (534)
Q Consensus 410 ~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~--------~~~v~~~A~~aL~~L~~~-~~~~~~~~~ 480 (534)
.+++..+++.|+++|+||+.++..+..| ..|++|.|+++|.+. +.+++..|+.+|.+|+.. +.+.+.+.
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~- 442 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR- 442 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 9999999999999999999887777766 678999999999865 467899999999999854 56666555
Q ss_pred hCCCHHHHHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471 481 DDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 481 ~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L~~~ 514 (534)
+.|+++.|+++|.+. ..+.++++|..+|.+|..+
T Consensus 443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 589999999999885 3557999999999999875
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.6e-36 Score=312.67 Aligned_cols=357 Identities=17% Similarity=0.179 Sum_probs=303.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l 233 (534)
.++.++..|++++++.+..|+.+|.+++.+++..+..+++.|+++.|+++|++++++++..|+++|.+|+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 488999999999999999999999999988887777889999999999999999999999999999999987 5699999
Q ss_pred HhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc--------c--------CChHHHH
Q 009471 234 VSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--------T--------GDSVSQA 296 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~--------~--------~~~~~~~ 296 (534)
++.|++++|+++|. ++++.+++.|+++|++|+.+++++..+.+ |+++.|+.++. + .++.++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999888998999 99999999993 2 2456677
Q ss_pred HHHHHHHHccCCchHHHHHHhh-CcHHHHHHHhhc------CCChhHHHHHHHHHHHHccCC------------------
Q 009471 297 AAACTLKNISAVPEVRQMLAEE-GIVSVMIKLLDC------GILLGSKEYAAECLQNLTASN------------------ 351 (534)
Q Consensus 297 ~a~~aL~nLa~~~~~~~~i~e~-g~i~~L~~ll~~------~~~~~v~~~a~~~L~~La~~~------------------ 351 (534)
.|+++|+||+.+++++..+.+. |+++.|+.++.+ .+. .++++++.+|.|++...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~-~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD-KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC-TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch-HHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 9999999999998999999996 999999999985 233 68999999999997411
Q ss_pred --------------------------------hHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-Ccc-H-
Q 009471 352 --------------------------------ENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVS-Q- 393 (534)
Q Consensus 352 --------------------------------~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~~-~- 393 (534)
+...+.+.+.++++.|+.+|.+ +.+++.|+++|+||+. ... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0011233455678888888853 6789999999999997 222 1
Q ss_pred ---H-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCC------hHHHHHHHH
Q 009471 394 ---E-VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP------NSVREVAAQ 463 (534)
Q Consensus 394 ---~-~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~------~~v~~~A~~ 463 (534)
+ .+.+.|+++.|+++|.+++..+++.|+|+|.+++.+++.+..+. .|+++.|++++...+ .++...++.
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~ 399 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence 2 23368999999999999999999999999999999888777665 478999999998664 368889999
Q ss_pred HHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 464 aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+|.++....+.....+.+.|+++.|++++.++.++.+++.|..+|.++..+
T Consensus 400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 999998655555555566899999999999873457999999999998754
No 3
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.9e-35 Score=309.87 Aligned_cols=359 Identities=17% Similarity=0.214 Sum_probs=311.3
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-h
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-C 229 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~ 229 (534)
...+++++..++++|++.+.+|+..++++++.. ......+++.|+||.|+++|+.+ ++++|..|+++|.+|+...+ .
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 445999999999999999999999999987532 22356788999999999999865 48999999999999987664 8
Q ss_pred hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCC-----hHHHHHHHHHHH
Q 009471 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTLK 303 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL~ 303 (534)
+..+++.|++|.|+++|++++..+++.|+++|++|+.+ ++.+..+.+.|+++.|+.++...+ ...+..++++|.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999987 556778889999999999998754 346788999999
Q ss_pred HccCCchHHHH-HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHH
Q 009471 304 NISAVPEVRQM-LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESA 380 (534)
Q Consensus 304 nLa~~~~~~~~-i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a 380 (534)
|++.+...... ....++++.|++++.+++. +++..++++|.+|+.+++.....+.+.|+++.|++++.+ +.++..+
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 99987643333 3347889999999998887 899999999999999888888888899999999999976 5689999
Q ss_pred HHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 381 VGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 381 ~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
+++|+|++. +.....+++.|+++.|+.+|.++++.+++.|+|+|.|++.+ ++.+..+.+.|+++.|+.++.+++.++
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 999999987 34556788999999999999999999999999999999964 788899999999999999999999999
Q ss_pred HHHHHHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 458 REVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 458 ~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+..|+++|++++.. ..+...++ +.|+++.|+.+|+.. +..+...++.+|.|+...
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~-~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHH-HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH-HCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999853 34444454 579999999999987 446889999999998764
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.4e-35 Score=317.02 Aligned_cols=362 Identities=18% Similarity=0.172 Sum_probs=310.6
Q ss_pred hhchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 152 THGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
....++.+++.|.++ +.+.+..|+..|..+..+.+ .+..++ +.|+++.|+++|+++++.++..|+++|.||+...+
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~-vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE-CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH-HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 445577788888887 88999999999999987544 444554 67999999999999999999999999999997431
Q ss_pred ------------------------------hh---HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471 229 ------------------------------CE---NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (534)
Q Consensus 229 ------------------------------~~---~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~ 275 (534)
.+ +.+++.|++++|+.+|+++++.+++.|+|+|.|++.+++++..+.
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv 533 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVV 533 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12 678899999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH---HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML---AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (534)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i---~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~ 352 (534)
++|++++|+.++.++++..+..|+++|.||+.+.+....+ ...|+++.|+++|.++.....+..|+++|.||+..++
T Consensus 534 ~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 534 QEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999999998643222211 1146899999999866442346789999999999888
Q ss_pred HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLIS-LGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~-~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
..+..+++.|+++.|++++.+ +.++..|+++|+||+. ++....+.+ .|.++.|+.++.+.+..+|+.|+|+|++++
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999865 7799999999999998 555566665 689999999999999999999999999999
Q ss_pred C-ChhHHHHHHh-cCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCC--CchhHHHHH
Q 009471 429 T-SAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS--PQNTAKKYA 504 (534)
Q Consensus 429 ~-~~~~~~~i~~-~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~k~~a 504 (534)
. +++..+.+.+ .|+++.|++++.+++.+++..|+++|++++.........+.+.|++++|+.+|... .+..+...|
T Consensus 694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 7 6888888888 89999999999999999999999999999876554555566689999999999755 245688999
Q ss_pred HHHHHhhchh
Q 009471 505 VACLASLSPS 514 (534)
Q Consensus 505 ~~~L~~L~~~ 514 (534)
..+|.++...
T Consensus 774 l~aL~~ll~~ 783 (810)
T 3now_A 774 TQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999988654
No 5
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=9.9e-34 Score=302.51 Aligned_cols=360 Identities=17% Similarity=0.214 Sum_probs=312.7
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS- 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~- 228 (534)
....++.++..+++++++.+..|+..+..++.. .......+++.|+||.|+++|+.+ ++.++..|+++|.+++...+
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 345689999999999999999999999998753 223456788999999999999765 49999999999999998775
Q ss_pred hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCC-----hHHHHHHHHHH
Q 009471 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTL 302 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL 302 (534)
.+..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+ ++++..+.+.|+++.|+.++...+ ......++++|
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999986 567788899999999999998654 34678899999
Q ss_pred HHccCCchHHHH-HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHH
Q 009471 303 KNISAVPEVRQM-LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (534)
Q Consensus 303 ~nLa~~~~~~~~-i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~ 379 (534)
.|++.+...... ....++++.|+.++.++++ +++..++++|.+++.+++.....+...|+++.|+.++.+ +.++..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 999987643333 3347889999999998887 899999999999999888888889999999999999977 568999
Q ss_pred HHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChH
Q 009471 380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS 456 (534)
Q Consensus 380 a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~ 456 (534)
++.+|+|++. +.....+++.|+++.|+.+|.++++.+++.|+|+|+|++.+ ++.+..+.+.|++|.|+.++.+++.+
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 9999999997 34556788999999999999999999999999999999964 78888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 457 VREVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 457 v~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
++..|+++|++++.. .++...++ +.|+++.|+.+|+.. +..+...++.+|.|+...
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~-~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-HCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 999999999999853 33444444 579999999999987 456888999999998754
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-33 Score=300.47 Aligned_cols=358 Identities=19% Similarity=0.244 Sum_probs=314.1
Q ss_pred hchHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471 153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (534)
...|+.|+..|+. ++++.+..|+.+|.+++.+++.....+++.|+|+.|+.+|+++++++++.|+++|++|+.+.+ ++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 4579999999974 568899999999999999999998999999999999999999999999999999999998765 89
Q ss_pred HHHHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHhhcChhhHHH-HHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 009471 231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMARA-IVGHGGVRPLIEICQTGDSVSQAAAACTLKN 304 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~Ls~~~~~~~~-l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 304 (534)
..+++.|++++|+.+|...+ ......++++|.+++.+.+.... ....++++.|+.++.+++++++..++++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998753 34678899999999987654333 3336788999999999999999999999999
Q ss_pred ccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHH
Q 009471 305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV 381 (534)
Q Consensus 305 La~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~ 381 (534)
++.++ +....+.+.|+++.|++++.+++. .++..++.+|+|++.+++..+..+++.|+++.|+.++.+ +.++..|+
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCCh-hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 99976 555667789999999999998886 899999999999999999999999999999999999987 56899999
Q ss_pred HHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 382 ~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
++|+||+. ......+.+.|+++.|+.++.+++..++..|+|+|+|++. +++....+.+.|+++.|++++.++++.+
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i 436 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 436 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence 99999998 3455677899999999999999999999999999999985 4788899999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471 458 REVAAQAISSLVTL------PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (534)
Q Consensus 458 ~~~A~~aL~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~ 512 (534)
+..++++|.++... ......++.+.|++..+..|.+++ ++++.+.|..+|-..-
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCS-SHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHC
Confidence 99999999998732 222345677889999988887765 5678899988886654
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-33 Score=299.65 Aligned_cols=359 Identities=18% Similarity=0.241 Sum_probs=313.1
Q ss_pred hchHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471 153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (534)
...|+.|+..|+. ++++.+..|+.+|.+++.++++++..+++.|+||.|+++|+++++++++.|+++|++|+.+.+ ++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3569999999974 568899999999999999999999999999999999999999999999999999999999875 89
Q ss_pred HHHHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHhhcChhhHHH-HHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 009471 231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMARA-IVGHGGVRPLIEICQTGDSVSQAAAACTLKN 304 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~Ls~~~~~~~~-l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 304 (534)
..+.+.|++++|+.+|.+.+ ....+.++++|.+++.+...... ....++++.|+.++.+++++++..++++|++
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998754 34678899999999987654332 3336788999999999999999999999999
Q ss_pred ccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHH
Q 009471 305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV 381 (534)
Q Consensus 305 La~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~ 381 (534)
|+..+ +....+.+.|+++.|++++.+++. .++..++.+|+|++.+++..+..+++.|+++.|..++.+ +.++..|+
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCCh-hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 99876 455567789999999999998887 899999999999999999999999999999999999987 56899999
Q ss_pred HHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 382 ~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
++|+||+. ......+.+.|+++.|+.++.+++..+++.|+++|.|++. +.+....+.+.|+++.|++++.++++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 99999997 3456678899999999999999999999999999999985 4788899999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471 458 REVAAQAISSLVTL------PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (534)
Q Consensus 458 ~~~A~~aL~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~ 513 (534)
+..++++|.++... ......++.+.|++..+-.|..++ ++++.+.|..+|-..-.
T Consensus 418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCC
Confidence 99999999998732 122345677889999988887665 55788999988866543
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.4e-33 Score=295.51 Aligned_cols=363 Identities=15% Similarity=0.191 Sum_probs=318.4
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCC-c
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESG-S 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~-~ 228 (534)
....++.++..|.+++++.+..|+..|.+++...+ .....+++.|+++.|+++|++++ +.++..|+++|.+++... +
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34569999999999999999999999999987554 55677888899999999999987 999999999999999975 4
Q ss_pred hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHcc
Q 009471 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa 306 (534)
.+..+++.|+++.|+.+|.++++.+++.|+++|.+|+.+ ++.+..+...|+++.|+.++ .+.++.++..++++|.+|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999976 55677888899999999999 6778999999999999999
Q ss_pred CCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471 307 AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (534)
Q Consensus 307 ~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL 384 (534)
............|+++.|++++.+++. .++..++++|.+++.+.+...+.+++.|+++.|+.+|.+ +.++..|+++|
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 875444444568999999999998886 899999999999999888777888899999999999977 56899999999
Q ss_pred HHhhc--CccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREV 460 (534)
Q Consensus 385 ~~La~--~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~ 460 (534)
+||+. +.....+++.|+++.|+.+|.++ ++.++..|+++|.+++. +++....+.+.|+++.|++++.++++.++..
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 99998 34456778899999999999998 99999999999999996 4777888899999999999999999999999
Q ss_pred HHHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHH
Q 009471 461 AAQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARK 517 (534)
Q Consensus 461 A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~ 517 (534)
|+++|.+++.. +.+...+. +.+.++.|+.+|+.. +..++..++.+|.++.....+
T Consensus 391 a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 391 AAWAISNATSGGSHDQIKYLV-SEGCIKPLCDLLICP-DIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999955 44444454 579999999999986 457899999999999876443
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=291.84 Aligned_cols=357 Identities=18% Similarity=0.207 Sum_probs=283.8
Q ss_pred hhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC------------CHHHHHHHHH
Q 009471 151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT------------SPRIREKTVT 218 (534)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~------------~~~v~~~A~~ 218 (534)
.....++.++..+.+.+.+ +..+.|..+... ++.+..+++.|.+|.|+++|+.. +++++..|++
T Consensus 29 ~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 104 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104 (458)
T ss_dssp ----------------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence 3445578888888777766 366677777664 44667788999999999999863 3799999999
Q ss_pred HHHHhhcCCc-hhHHHHhcCCH----------HHHHHHHccCC--HH-----HHH-------HHHHHHHHhhcChhhHHH
Q 009471 219 VICSLAESGS-CENWLVSEGVL----------PPLIRLVESGS--TV-----GKE-------KATISLQRLSMSAEMARA 273 (534)
Q Consensus 219 ~L~~La~~~~-~~~~l~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~A~~~L~~Ls~~~~~~~~ 273 (534)
+|.+|+...+ ......+.+++ +.+++++.+.. .+ +++ +|+++|.|++.+++++..
T Consensus 105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~ 184 (458)
T 3nmz_A 105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 184 (458)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999998664 55555556666 55667776542 12 444 899999999999999999
Q ss_pred HHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCch-HHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471 274 IVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPE-VRQMLAE-EGIVSVMIKLLDCGILLGSKEYA 340 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~-~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a 340 (534)
+.+.|++++|+.++.. .++.++..|+++|.||+.+++ ++..+.. .|+|+.|+.+|.+++. ++++.+
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A 263 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 263 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHH
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHH
Confidence 9999999999999952 246789999999999998764 6666654 6679999999998886 899999
Q ss_pred HHHHHHHccC-ChHHHHHHHhcCChHHHHHhh-cC--CchHHHHHHHHHHhhc-C-ccHHHHH-hcCcHHHHHHHHhcCC
Q 009471 341 AECLQNLTAS-NENLRRSVVSEGGIRSLLAYL-DG--PLPQESAVGALRNLVG-S-VSQEVLI-SLGFFPRLVHVLKAGS 413 (534)
Q Consensus 341 ~~~L~~La~~-~~~~~~~i~~~g~l~~L~~~L-~~--~~~~~~a~~aL~~La~-~-~~~~~l~-~~~~i~~Lv~lL~~~~ 413 (534)
+++|.||+.. ++.++..+.+.|+++.|+++| .+ +.+++.++.+|+||+. . +++..+. ..|+++.|+.+|.+++
T Consensus 264 ~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~ 343 (458)
T 3nmz_A 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343 (458)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 9999999985 678899999999999999975 43 5689999999999998 4 5566676 7899999999998765
Q ss_pred H----HHHHHHHHHHHHhcC----ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC-CCcchHHHHhhCCC
Q 009471 414 L----GAQQAAASALCRVCT----SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKS 484 (534)
Q Consensus 414 ~----~v~~~A~~aL~~la~----~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~ 484 (534)
+ .+++.|+++|++++. +++++..+.+.|+++.|++++.+++..+++.|+++|++|+. ++.++..+. +.|+
T Consensus 344 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~G~ 422 (458)
T 3nmz_A 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGA 422 (458)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHH-HHTH
T ss_pred CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHH-HCCC
Confidence 4 599999999999994 78999999999999999999999999999999999999995 456655555 4799
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 485 VPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 485 v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
++.|+.+|+++ +..+++.|..+|.||+.+
T Consensus 423 I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 423 VSMLKNLIHSK-HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHTTTTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999886 457899999999999865
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-33 Score=306.50 Aligned_cols=368 Identities=17% Similarity=0.199 Sum_probs=310.8
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCc----HHHHHHHhcCC--CHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSN----IAALVQLLTAT--SPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~----v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~ 226 (534)
..++.|...++++++..+..|+..|.++..... +.....++.|+ ++.|+++|.++ ++++++.|+++|..|+.+
T Consensus 330 ~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 330 QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409 (810)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 346778888888888899999999999974321 12123334454 56688888887 799999999999999999
Q ss_pred CchhHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh------------------------------hH---H
Q 009471 227 GSCENWLVS-EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE------------------------------MA---R 272 (534)
Q Consensus 227 ~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~------------------------------~~---~ 272 (534)
++.|..++. .|+++.|+.+|++++..++..|+++|.|++..++ .+ +
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 998888875 6999999999999999999999999999997532 12 6
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC-C
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-N 351 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~-~ 351 (534)
.+++.|+++.|+.++.++++.++..|+++|.|++.+++++..+++.|+++.|+.++.++++ ..++.|+++|.+|+.+ +
T Consensus 490 ~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE-KGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCC
Confidence 7888999999999999999999999999999999988999999999999999999999887 7899999999999874 3
Q ss_pred hHHHH-HHHhcCChHHHHHhhcCC-c--hHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471 352 ENLRR-SVVSEGGIRSLLAYLDGP-L--PQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (534)
Q Consensus 352 ~~~~~-~i~~~g~l~~L~~~L~~~-~--~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (534)
+.... .....+++++|+++|.++ . .+..|+++|.||+. +.....+++.|+++.|+.++.++++.+|+.|+++|+
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~ 648 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC 648 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32210 001135899999999753 3 34689999999998 356778899999999999999999999999999999
Q ss_pred HhcCChhHHHHHHh-cCchHHHHHhhcCCChHHHHHHHHHHHHhcC-CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHH
Q 009471 426 RVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503 (534)
Q Consensus 426 ~la~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~ 503 (534)
||+.+++.+..+.+ .|.++.|+.++.+++..+|..|+++|++|+. .+.+.+.++...++++.|+++|.++ +..++..
T Consensus 649 NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~ 727 (810)
T 3now_A 649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHR 727 (810)
T ss_dssp HHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHH
T ss_pred HHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHH
Confidence 99999888888875 6899999999999999999999999999997 5667777776579999999999986 5579999
Q ss_pred HHHHHHhhchhHHHHHHHHh
Q 009471 504 AVACLASLSPSARKLLERLE 523 (534)
Q Consensus 504 a~~~L~~L~~~~k~~~~~l~ 523 (534)
|+++|.|++.+.++..+.+.
T Consensus 728 A~~aL~NL~~~s~e~~~~l~ 747 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLF 747 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999987666655554
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=290.84 Aligned_cols=318 Identities=19% Similarity=0.194 Sum_probs=273.2
Q ss_pred chHHHHHHHHhc------------CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcH----------HHHHHHhcCCC--
Q 009471 154 GNTRELLARLQI------------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI----------AALVQLLTATS-- 209 (534)
Q Consensus 154 ~~i~~Ll~~L~~------------~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v----------~~Lv~lL~~~~-- 209 (534)
..++.|++.|+. ++++.+.+|+.+|.+++..+++......+.|.+ +.+++++.+..
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 457888999985 447999999999999999888776666666666 66777777652
Q ss_pred HH-----HHH-------HHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhc
Q 009471 210 PR-----IRE-------KTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLSM 266 (534)
Q Consensus 210 ~~-----v~~-------~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~ 266 (534)
.+ +++ .|+++|.+++.++++|+.+++.|++++|+.+|.. .++.+++.|+++|.+|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 22 555 9999999999998899999999999999999952 246789999999999998
Q ss_pred Chh-hHHHHHhCCC-hHHHHHHHccCChHHHHHHHHHHHHccCC--chHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHH
Q 009471 267 SAE-MARAIVGHGG-VRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAA 341 (534)
Q Consensus 267 ~~~-~~~~l~~~g~-i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~ 341 (534)
+++ ++..+...+| |+.|+.+|.+++++++..++++|+||+.. ++++..+++.|+++.|+++|. +++. .+++.++
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~-~v~~~A~ 308 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVL 308 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH-HHHHHHH
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH-HHHHHHH
Confidence 765 5666665555 99999999999999999999999999984 578999999999999999864 4554 8999999
Q ss_pred HHHHHHccCChHHHHHHH-hcCChHHHHHhhcC--C----chHHHHHHHHHHhhc-----CccHHHHHhcCcHHHHHHHH
Q 009471 342 ECLQNLTASNENLRRSVV-SEGGIRSLLAYLDG--P----LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVL 409 (534)
Q Consensus 342 ~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L~~--~----~~~~~a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL 409 (534)
.+|+||+.+++.++..+. ..|+++.|+++|.+ + .+++.|+++|+||+. ++.+..+.+.|+++.|+.+|
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 999999986667777777 79999999999975 2 279999999999983 45667888999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471 410 KAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (534)
Q Consensus 410 ~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 472 (534)
++++..++++|+++|+|++ .+++.+..+.+.|+++.|+++++++++.+++.|+++|.+|+.+.
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999 56999999999999999999999999999999999999998664
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.5e-31 Score=286.00 Aligned_cols=363 Identities=17% Similarity=0.215 Sum_probs=318.2
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS- 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~- 228 (534)
....++.++..|++++++.+..|+..|.+++... ......+++.|+++.|+++|+++ ++.+|..|+++|.+++...+
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4456999999999999999999999999997642 33456677889999999999997 79999999999999998764
Q ss_pred hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
.+..++..|+++.|+.+|.++++.+++.|+++|.+++.+ ++.+..+...|+++.|+.++.+.++.++..++++|.+|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 788888999999999999999999999999999999987 5667788889999999999999999999999999999998
Q ss_pred Cc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471 308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (534)
Q Consensus 308 ~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL 384 (534)
+. .........++++.|+.++.+++. .++..++++|.+++...+.....+++.|+++.|+.++.+ +.++..|+++|
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 65 444455668999999999998876 899999999999999888888888899999999999976 55899999999
Q ss_pred HHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 385 ~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
++++. +.....+.+.|+++.|+.+|.++++.++..|+++|.+++. +++..+.+.+.|+++.|++++.++++.++..|
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99997 3445567788999999999999999999999999999996 47778888899999999999999999999999
Q ss_pred HHHHHHhcCC--C--cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHH
Q 009471 462 AQAISSLVTL--P--QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARK 517 (534)
Q Consensus 462 ~~aL~~L~~~--~--~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~ 517 (534)
+++|.+++.. + .....+. +.+.++.|+.+|+.. +..++..++.+|.++......
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence 9999999853 3 4555655 479999999999986 457999999999999886543
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.6e-32 Score=289.10 Aligned_cols=360 Identities=17% Similarity=0.231 Sum_probs=320.0
Q ss_pred hchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471 153 HGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (534)
...++.|+..|.+++ ++.+..|+.+|.+++.++++++..+++.|+++.|+.+|+++++.+++.|+++|++++.+.+ ++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 457999999999887 9999999999999999889999999999999999999999999999999999999998765 78
Q ss_pred HHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 231 NWLVSEGVLPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
..+...|++++|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.++++.++..++++|.+++..+
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999 567899999999999999987554444456899999999999999999999999999999876
Q ss_pred hH-HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHH
Q 009471 310 EV-RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALR 385 (534)
Q Consensus 310 ~~-~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~ 385 (534)
+. ...+.+.|+++.|+.++.+++. .++..|+.+|++++.+++...+.+++.|+++.|+.+|.+ +.++..|+++|+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSP-SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCCh-hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 44 4677789999999999998886 899999999999999888888899999999999999965 458999999999
Q ss_pred Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471 386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
||+. ......+.+.|+++.|+.+|.++++.++..|+++|.+++.. ++....+.+.|+++.|++++.++++.++..+
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a 434 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 434 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9997 33445677889999999999999999999999999999964 7889999999999999999999999999999
Q ss_pred HHHHHHhcCCCcc-----------hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+.+|.+|+...+. ....+.+.+++..+..+.++. ++.++.+|..+|.++...
T Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHD-NNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCCC
Confidence 9999999854332 355666789999999988775 557999999999988765
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3e-31 Score=283.67 Aligned_cols=360 Identities=16% Similarity=0.214 Sum_probs=318.8
Q ss_pred hchHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471 153 HGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (534)
...++.|+..|.++ +++.+..|+.+|.+++..++.....+++.|+++.|+.+|+++++.+++.|+++|++++.+.+ ++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 35689999999987 89999999999999999888888888899999999999999999999999999999998864 88
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
..+...|+++.|+.++.+.+..++..|+++|.+|+.+. +........++++.|+.++.++++.++..++++|.+|+...
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999775 44445556899999999999999999999999999999864
Q ss_pred -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471 310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (534)
Q Consensus 310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~ 386 (534)
+....+.+.|+++.|+.++.+++. .++..++.+|.+++.+++...+.+++.|+++.|+.+|.+ +.++..|+++|++
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCCh-hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 667778889999999999998776 899999999999999888888888999999999999987 4689999999999
Q ss_pred hhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--h--hHHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471 387 LVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--A--EMKKLVGEAGCTPLLIKLLEAKPNSVREV 460 (534)
Q Consensus 387 La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~--~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~ 460 (534)
++. +.....+++.++++.|+.+|.++++.++..|+++|.+++.. + +..+.+.+.|+++.|+.++.++++.++..
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 997 33445677899999999999999999999999999999853 4 78888999999999999999999999999
Q ss_pred HHHHHHHhcCCCcc-----------hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 461 AAQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 461 A~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
++++|.+++...++ ....+.+.|+++.|..++++. +..++..|..+|.++...
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~-~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE-NDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS-CHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCCc
Confidence 99999999854332 234455689999999988875 557999999999887754
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-31 Score=283.61 Aligned_cols=337 Identities=17% Similarity=0.197 Sum_probs=271.2
Q ss_pred HHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhHHHHhcCCHHHHHHHHccCCH
Q 009471 173 KALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENWLVSEGVLPPLIRLVESGST 251 (534)
Q Consensus 173 ~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~l~~~g~i~~Lv~lL~~~~~ 251 (534)
.++..|-.+.++.++ ..-...+.++.|+++|.++++++|..|+++|.+++. +++++..+++.|+|++|+++|++++.
T Consensus 27 ~~~~~~~~~~~~~~~--~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~ 104 (584)
T 3l6x_A 27 GSLASLDSLRKGGPP--PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK 104 (584)
T ss_dssp -------------CC--CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred chHHHHHHHHhcCCC--CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH
Confidence 445555555543231 122356889999999999999999999999999997 45699999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh
Q 009471 252 VGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL 328 (534)
Q Consensus 252 ~~~~~A~~~L~~Ls~--~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll 328 (534)
.+++.|+++|.+|+. +++++..+.+.|+|+.|+.+|++ ++..++..++++|+||+..++++..|++ ++++.|++++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL 183 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEV 183 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHH
Confidence 999999999999998 48899999999999999999997 5788999999999999999999999996 5699999987
Q ss_pred h-----------------cCCChhHHHHHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------CchHHHHHH
Q 009471 329 D-----------------CGILLGSKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVG 382 (534)
Q Consensus 329 ~-----------------~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~~~~~a~~ 382 (534)
. +..+..++++|.++|.||+..+++.|..+.+. |+++.|+.++++ ...++.|++
T Consensus 184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~ 263 (584)
T 3l6x_A 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263 (584)
T ss_dssp HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 2 11124789999999999999888889889875 556799998852 357899999
Q ss_pred HHHHhhcCc---c------------------------HHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC----
Q 009471 383 ALRNLVGSV---S------------------------QEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS---- 430 (534)
Q Consensus 383 aL~~La~~~---~------------------------~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~---- 430 (534)
+|+||+... . .+.+...+.++.|+.+|+ +.++.+++.|+++|.||+.+
T Consensus 264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~ 343 (584)
T 3l6x_A 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343 (584)
T ss_dssp HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence 999999731 0 011122345678899996 56799999999999999854
Q ss_pred -hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCC-------chhHHH
Q 009471 431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP-------QNTAKK 502 (534)
Q Consensus 431 -~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-------~~~~k~ 502 (534)
...+..+.+.+++|.|++|+.+++..++..|+++|.||+.++.++..+ . .++++.|+++|..+. .+++..
T Consensus 344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~ 421 (584)
T 3l6x_A 344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVI 421 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHhcCCcccccccchHHHHH
Confidence 234556667789999999999999999999999999999988887665 3 489999999998762 245778
Q ss_pred HHHHHHHhhchh
Q 009471 503 YAVACLASLSPS 514 (534)
Q Consensus 503 ~a~~~L~~L~~~ 514 (534)
.++.+|.||+..
T Consensus 422 ~a~~tL~NL~a~ 433 (584)
T 3l6x_A 422 SILNTINEVIAE 433 (584)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 899999999755
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.8e-31 Score=275.58 Aligned_cols=357 Identities=17% Similarity=0.249 Sum_probs=312.5
Q ss_pred chHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhH
Q 009471 154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN 231 (534)
Q Consensus 154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~ 231 (534)
..++.++..|+++ +++.+..|+..|.+++..+++....+++.|+++.|+++|+++++++|+.|+++|++++.+.+ .+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4689999999998 89999999999999999888887888889999999999999999999999999999999875 888
Q ss_pred HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471 232 WLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (534)
.+++.|+++.|++++++ .+..++..++++|.+++.+. .....+. .++++.|+.++.++++.++..++++|.+++..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 89999999999999996 68999999999999999764 2222232 78999999999999999999999999999985
Q ss_pred c-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHH
Q 009471 309 P-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALR 385 (534)
Q Consensus 309 ~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~ 385 (534)
. +....+.+.|+++.+++++.+++. .++..++.+|.+++.+++..++.+.+.|+++.|++++++ +.++..|+++|+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCch-hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 677778889999999999998776 899999999999999888888888899999999999987 468999999999
Q ss_pred Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471 386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
+++. +.....+.+.++++.|+.++.++++.++..|+++|.+++. +++..+.+.+.|+++.|++++.++++.++..|
T Consensus 302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 381 (450)
T 2jdq_A 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA 381 (450)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 9997 3445567788999999999999999999999999999985 46778888899999999999999999999999
Q ss_pred HHHHHHhcCCCcc-----------hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471 462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (534)
Q Consensus 462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~ 513 (534)
+++|.+++...++ ....+.+.|+++.|..++++. +..++..|..+|.++-.
T Consensus 382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE-NQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCC
Confidence 9999999854332 124455678999999988765 55789999999887653
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.9e-30 Score=276.84 Aligned_cols=357 Identities=20% Similarity=0.233 Sum_probs=303.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENW 232 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~ 232 (534)
..++.++..|++++++.+..|+..|.+++..++..+..+.+.|+++.|++++++++++++..++.+|.+++... +++..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46899999999999999999999999999887777788888899999999999999999999999999999864 58889
Q ss_pred HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH------------------------
Q 009471 233 LVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC------------------------ 287 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll------------------------ 287 (534)
+.+.|+++.|+++|+++ +...++.++.+|.+++.+++++..+.+.|+++.|+.++
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence 99999999999999986 44567788999999999888888888878776665554
Q ss_pred ---------------ccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccC
Q 009471 288 ---------------QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 288 ---------------~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~ 350 (534)
.++++.++..++++|++|+.++ +++..+.+.|+++.+++++.+ ++...+++.++.+|+|++..
T Consensus 261 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 4456777888888999998854 688899999999999999975 33248999999999999986
Q ss_pred ChH---HHHHHHhcCChHHHHHhhcC--C-chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHH--
Q 009471 351 NEN---LRRSVVSEGGIRSLLAYLDG--P-LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA-- 421 (534)
Q Consensus 351 ~~~---~~~~i~~~g~l~~L~~~L~~--~-~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~-- 421 (534)
++. .+..+.+.|+++.|++++.+ + .++..++++|+|++. +.....+.+.|+++.|+.+++++++.+++.|+
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 420 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc
Confidence 433 57788899999999999976 2 688999999999998 66677888999999999999887777776555
Q ss_pred --------------------HHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471 422 --------------------SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481 (534)
Q Consensus 422 --------------------~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~ 481 (534)
.+|++++.+++++..+.+.|+++.|++++.+++++++..|+.+|.+++.+++++..+ .+
T Consensus 421 l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i-~~ 499 (529)
T 1jdh_A 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI-EA 499 (529)
T ss_dssp -----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHH-HH
T ss_pred cCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence 455567777888899999999999999999999999999999999998766665555 45
Q ss_pred CCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (534)
Q Consensus 482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~ 512 (534)
.++++.|..+++++ ++.++.+|..+|.+|+
T Consensus 500 ~~~~~~L~~l~~~~-~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 500 EGATAPLTELLHSR-NEGVATYAAAVLFRMS 529 (529)
T ss_dssp TTCHHHHHHGGGCS-SHHHHHHHHHHHHHHC
T ss_pred cCChHHHHHHhcCC-CHHHHHHHHHHHHhcC
Confidence 79999999999886 5579999999999875
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.6e-31 Score=274.30 Aligned_cols=314 Identities=19% Similarity=0.204 Sum_probs=266.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHH
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAI 274 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l 274 (534)
.++.|+++|+++++++|..|+++|.+++.+++ .+..+++.|+++.|+++|+++++.+++.|+++|.+|+.. ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999997665 687999999999999999999999999999999999986 8899999
Q ss_pred HhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh--------cCC-------ChhHHH
Q 009471 275 VGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--------CGI-------LLGSKE 338 (534)
Q Consensus 275 ~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~--------~~~-------~~~v~~ 338 (534)
++.|+++.|+++|. ++++.++..++++|+||+.+++++..+++ |+++.|++++. ++. +..+..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 99999999993 221 225666
Q ss_pred HHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------CchHHHHHHHHHHhhcC-------------------
Q 009471 339 YAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVGS------------------- 390 (534)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~~~~~a~~aL~~La~~------------------- 390 (534)
+|+++|.||+.+ +.++..+.+. |+++.|++++++ ....+.|+.+|+||+..
T Consensus 162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 999999999986 8889889887 999999999963 45789999999999731
Q ss_pred ---------------------------------ccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC-h----
Q 009471 391 ---------------------------------VSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS-A---- 431 (534)
Q Consensus 391 ---------------------------------~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~la~~-~---- 431 (534)
...+.+.+.++++.|+.+|.+. ++.+++.|+|+|.|++.. .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0112334566788999999654 689999999999999964 2
Q ss_pred hH-HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCc-----hhHHHHHH
Q 009471 432 EM-KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKYAV 505 (534)
Q Consensus 432 ~~-~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~k~~a~ 505 (534)
.. +..+.+.|++|.|++++.+++.+++..|+++|.+|+.+..++..+.. ++++.|+++|...+. ..+...+.
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 23 33445689999999999999999999999999999988777655543 789999999987632 34677888
Q ss_pred HHHHhhchh
Q 009471 506 ACLASLSPS 514 (534)
Q Consensus 506 ~~L~~L~~~ 514 (534)
.+|.++..+
T Consensus 399 ~~l~ni~~~ 407 (457)
T 1xm9_A 399 YTVRNLMAS 407 (457)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998765
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.3e-30 Score=270.39 Aligned_cols=356 Identities=16% Similarity=0.178 Sum_probs=308.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh--cChHhHHHHhcC-CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCC-chh
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMK--EDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESG-SCE 230 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~--~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~-~~~ 230 (534)
++.++..|++++++.+..|+..|..++. .++.. ..+++. |+++.|+++|+++ ++.+|..|+++|.+++... +..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 7889999999999999999999999875 33333 456666 9999999999998 7999999999999999865 466
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCC
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~ 308 (534)
..+++.|+++.|+++|+++++.+++.|+++|.+++.+. +.+..+...|+++.|+.++.+ .++.++..++++|++++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999874 567778889999999999995 7899999999999999975
Q ss_pred c--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471 309 P--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (534)
Q Consensus 309 ~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL 384 (534)
. .....+. .++++.+++++.+++. .++..++++|.+++...+..+..+.+.|+++.|++++.+ +.++..|+++|
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccCCH-HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 3 3323333 7899999999998876 899999999999999877778888899999999999976 56899999999
Q ss_pred HHhhcC--ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471 385 RNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 385 ~~La~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
++++.. .....+.+.|+++.|+.++.++++.++..|+++|.+++. +++..+.+.+.|+++.|++++.++++.+|..|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 999982 334557788999999999999999999999999999996 57788888889999999999999999999999
Q ss_pred HHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHH
Q 009471 462 AQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR 516 (534)
Q Consensus 462 ~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k 516 (534)
+++|.+++.. +.....+. +.+.++.|+++|+.. +..++..++.+|.+++....
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhch
Confidence 9999999853 34555555 469999999999976 45799999999999998654
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.98 E-value=8.8e-30 Score=278.56 Aligned_cols=359 Identities=20% Similarity=0.212 Sum_probs=311.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENW 232 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~ 232 (534)
..++.|+..|+++++..+..|+.+|.+++..++..+..+++.|+++.|+++|+++++.++..++.+|.+++. +++++..
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 468999999999999999999999999998877777788889999999999999999999999999999997 4568999
Q ss_pred HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH------------------------
Q 009471 233 LVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC------------------------ 287 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll------------------------ 287 (534)
+++.|+++.|+++|++. ....++.++.+|++|+.+++++..+.+.|+++.|+.++
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence 99999999999999987 45678899999999999999998888888877776554
Q ss_pred ---------------ccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcC-CChhHHHHHHHHHHHHccC
Q 009471 288 ---------------QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCG-ILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 288 ---------------~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~-~~~~v~~~a~~~L~~La~~ 350 (534)
.++++.++..++++|++|+..+ +++..+.+.|+++.|++++.+. +...+++.++.+|.+|+..
T Consensus 258 ~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 258 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 4456777888888888888854 7788899999999999999763 3238999999999999975
Q ss_pred Ch---HHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCC----------
Q 009471 351 NE---NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGS---------- 413 (534)
Q Consensus 351 ~~---~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~---------- 413 (534)
++ ..+..+.+.|+++.|+++|.+ +.++..++++|+||+. +.+...+.+.|+++.|+.++.+.+
T Consensus 338 ~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a 417 (644)
T 2z6h_A 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417 (644)
T ss_dssp STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----
T ss_pred CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc
Confidence 43 355668889999999999976 3689999999999998 667788889999999999997632
Q ss_pred ------------HHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471 414 ------------LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481 (534)
Q Consensus 414 ------------~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~ 481 (534)
.+++..++.+|++|+.+++++..+.+.|+++.|++++.+.+++++..|+.+|.+++.+++.+..+ .+
T Consensus 418 l~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i-~~ 496 (644)
T 2z6h_A 418 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI-EA 496 (644)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHH-HH
T ss_pred cccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHH-HH
Confidence 46777889999999999999999999999999999999999999999999999998775565544 55
Q ss_pred CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.|+++.|+.++++. +..++.+|..+|.+++..
T Consensus 497 ~g~l~~L~~ll~~~-~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 497 EGATAPLTELLHSR-NEGVATYAAAVLFRMSED 528 (644)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTT
T ss_pred cCChhHHHHHHcCC-CHHHHHHHHHHHHHHhcc
Confidence 79999999999886 557999999999999986
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.98 E-value=1.7e-30 Score=277.32 Aligned_cols=358 Identities=18% Similarity=0.192 Sum_probs=310.6
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc-CCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchh
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~ 230 (534)
...++.|+..|+++++..+..|+..|.+++.+++ ++..++. .|+++.|+++|+++ +++++..|+.+|.+++.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 3468999999999999999999999999997544 5555554 48999999999765 7999999999999999988899
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV- 308 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~- 308 (534)
..+++.|+++.|+++|+++++.++..|+++|.+++.+ ++.+..+.+.|+++.|+.++.++++.++..++.+|++++..
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999987 45567788899999999999999999999999999999984
Q ss_pred chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (534)
Q Consensus 309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~ 386 (534)
++++..+.+.|+++.+++++++++....++.+..+|.+++. ++..+..+.+.|+++.|++++.+ +.++..++++|.+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 68999999999999999999988776678889999999997 56678889999999999999976 5678999999999
Q ss_pred hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHH
Q 009471 387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQ 463 (534)
Q Consensus 387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~ 463 (534)
|+....... ...++++.|++++.+.++.++..|+++|.+++.+ ++.+..+.+.|+++.|++++.+ .++.++..|+.
T Consensus 254 l~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 254 LSDAATKQE-GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HHTTCTTCS-CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCChhhH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 998321111 1246799999999999999999999999999976 7899999999999999999974 34799999999
Q ss_pred HHHHhcCCCcc----hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 464 AISSLVTLPQN----CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 464 aL~~L~~~~~~----~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+|.+|+...+. +..+ .+.++++.|+++|.++.+..++..++++|.|++.+
T Consensus 333 ~L~nl~~~~~~~~~~~~~i-~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHH-HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCchHHHHHHHH-HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 99999865332 3344 45799999999999875457999999999999976
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=278.94 Aligned_cols=358 Identities=18% Similarity=0.193 Sum_probs=311.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcC-CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
..++.|+..|+++++..+..|+..|.+++.+++ ++..++.. |+++.|+++|.++ +++++..|+.+|.+++.+++++.
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 358999999999999999999999999998665 55556544 8899999999876 79999999999999999888999
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-Cc
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~ 309 (534)
.+.+.|+++.|+++|+++++.++..|+++|.+++..+ +.+..+.+.|+++.|+.+++++++.++..++.+|++++. ++
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999998764 556678889999999999999999999999999999997 67
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L 387 (534)
+++..+.+.|+++.|++++++.+...+++.++.+|.+++. ++.++..+++.|+++.|++++.+ +.++..++++|.||
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999887765788999999999997 56778899999999999999976 56899999999999
Q ss_pred hcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCC--ChHHHHHHHHH
Q 009471 388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQA 464 (534)
Q Consensus 388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~A~~a 464 (534)
+...... ....++++.|+.++.+.++.++..|+++|.+|+.. ++.+..+.+.|+++.|++++.+. .+.++..|+.+
T Consensus 252 ~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 252 SDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 9821111 11236799999999999999999999999999975 78899999999999999999853 37999999999
Q ss_pred HHHhcCCCcc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 465 ISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 465 L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
|.+|+...+. ....+.+.++++.|+++|.++.+..+++.++++|.|++.+
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 9999865332 1232345789999999999875457999999999999965
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=4.7e-29 Score=277.51 Aligned_cols=359 Identities=20% Similarity=0.231 Sum_probs=308.7
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENW 232 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~ 232 (534)
..++.|+..|+++++..+..|+.+|.+++...+..+..+.+.|+++.|+++|++++..++..++.+|.+++... +.+..
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 57899999999999999999999999999987778888888999999999999999999999999999999754 58889
Q ss_pred HHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH------------------------
Q 009471 233 LVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC------------------------ 287 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll------------------------ 287 (534)
+++.|+++.|+++|++++. ..++.++.+|.+|+..++++..+++.|+++.|+.++
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence 9999999999999998754 466788999999998888888887777766665544
Q ss_pred ---------------ccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccC
Q 009471 288 ---------------QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 288 ---------------~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~ 350 (534)
.+.++.++..++++|++|+..+ +++..+.+.|+++.|++++.+ ++...+++.|+.+|++|+..
T Consensus 394 ~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 4456778888999999998865 788888899999999999976 33337999999999999975
Q ss_pred ChH---HHHHHHhcCChHHHHHhhcC--C-chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCC----------
Q 009471 351 NEN---LRRSVVSEGGIRSLLAYLDG--P-LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGS---------- 413 (534)
Q Consensus 351 ~~~---~~~~i~~~g~l~~L~~~L~~--~-~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~---------- 413 (534)
++. .+..+...++++.|+++|.+ . .++..|+++|+||+. +.+...+.+.|+++.|+.+|.+++
T Consensus 474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~a 553 (780)
T 2z6g_A 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553 (780)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhc
Confidence 443 45678899999999999976 3 689999999999998 555677888999999999997643
Q ss_pred ------------HHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471 414 ------------LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481 (534)
Q Consensus 414 ------------~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~ 481 (534)
.+++..++.+|++|+.+++++..+.+.|+++.|++++.++++.++..|+.+|++|+.+++.+..+ .+
T Consensus 554 l~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i-~~ 632 (780)
T 2z6g_A 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI-EA 632 (780)
T ss_dssp ----CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHH-HH
T ss_pred cccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence 35677899999999988999999999999999999999999999999999999998776665555 45
Q ss_pred CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.|+++.|+.++++. +..++.+|..+|.+++..
T Consensus 633 ~g~i~~L~~Ll~~~-~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 633 EGATAPLTELLHSR-NEGVATYAAAVLFRMSED 664 (780)
T ss_dssp TTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 79999999999886 557999999999999986
No 24
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5e-30 Score=257.65 Aligned_cols=264 Identities=19% Similarity=0.211 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcChh-hHHHHHhC
Q 009471 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLSMSAE-MARAIVGH 277 (534)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~ 277 (534)
...+..|+++|.+++.++++|+.+++.|++++|+.+|.. .++.++..|+++|.+|+.+++ ++..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 455668999999999998899999999999999999953 246789999999999998755 66677665
Q ss_pred CC-hHHHHHHHccCChHHHHHHHHHHHHccCC--chHHHHHHhhCcHHHHHHHh-hcCCChhHHHHHHHHHHHHccCChH
Q 009471 278 GG-VRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 278 g~-i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~i~~L~~ll-~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
+| |+.|+.+|++++++++..++++|+||+.. ++++..+.+.|+++.|+++| .+++. ++++.++.+|+||+..++.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccChh
Confidence 55 99999999999999999999999999985 57899999999999999986 44554 8999999999999987777
Q ss_pred HHHHHH-hcCChHHHHHhhcC--C----chHHHHHHHHHHhhc-----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHH
Q 009471 354 LRRSVV-SEGGIRSLLAYLDG--P----LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421 (534)
Q Consensus 354 ~~~~i~-~~g~l~~L~~~L~~--~----~~~~~a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~ 421 (534)
++..+. ..|+++.|+++|.+ + .+++.|+++|+||+. ++.+..+.+.|+++.|+.+|++++..+++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 777777 79999999999975 2 379999999999993 45677888999999999999999999999999
Q ss_pred HHHHHhc-CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc
Q 009471 422 SALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474 (534)
Q Consensus 422 ~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~ 474 (534)
++|+|++ .+++.+..+.+.|++|.|+++++++++.+++.|+++|.+|+...+.
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999 4699999999999999999999999999999999999999976544
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=3.9e-28 Score=270.13 Aligned_cols=359 Identities=18% Similarity=0.188 Sum_probs=308.6
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc-CCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchh
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~ 230 (534)
...++.|+..|.++++..|..|+.+|.+++..+ .++..+.. .|+++.|+++|+++ +++++..|+.+|.+|+...+++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 446899999999999999999999999998754 35555664 37899999999865 7999999999999999988888
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-C
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V 308 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~ 308 (534)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+. +.+..+.+.|+++.|+.++.++++.++..++.+|++++. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999874 556677789999999999999999999999999999997 4
Q ss_pred chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (534)
Q Consensus 309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~ 386 (534)
++++..+.+.|+++.|+.++++++....++.++.+|.+++. .+.++..+++.|+++.|+.++.+ +.++..++++|.+
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~ 386 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 68999999999999999999988775678889999999997 56678889999999999999976 4578999999999
Q ss_pred hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC-CC-hHHHHHHHH
Q 009471 387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA-KP-NSVREVAAQ 463 (534)
Q Consensus 387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~-~~-~~v~~~A~~ 463 (534)
|+..... .....++++.|+.++.+.++.++..|+++|.+|+.. ++.+..+.+.|+++.|++++.. .+ +.++..|+.
T Consensus 387 L~~~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 387 LSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhccchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 9973211 111246799999999999999999999999999976 6889999999999999999975 33 489999999
Q ss_pred HHHHhcCCCcch---HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 464 AISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 464 aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+|.+|+...... +..+.+.++++.|+.+|.++....+++.++++|.||+.+
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 999998654331 233445789999999999875457999999999999965
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=7.5e-29 Score=249.06 Aligned_cols=260 Identities=20% Similarity=0.224 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcCCc-hhHHHHhc-
Q 009471 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGS-CENWLVSE- 236 (534)
Q Consensus 170 ~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~-~~~~l~~~- 236 (534)
.+.+|+.+|.+++.+ ++++..+++.|++++|+.+|.. .++.+|..|+++|.+|+..++ ++..+...
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 345788999999875 7899999999999999999952 237899999999999998776 77777655
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHH-HccCChHHHHHHHHHHHHccC-CchHH
Q 009471 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISA-VPEVR 312 (534)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~-~~~~~ 312 (534)
|+++.|+++|+++++++++.|+++|.+|+.. ++++..+.+.|+++.|+++ ++++++.++..++++|+||+. .++++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5599999999999999999999999999974 6788899999999999997 466789999999999999999 66888
Q ss_pred HHHH-hhCcHHHHHHHhhcCCCh---hHHHHHHHHHHHHcc---CChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHH
Q 009471 313 QMLA-EEGIVSVMIKLLDCGILL---GSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA 383 (534)
Q Consensus 313 ~~i~-e~g~i~~L~~ll~~~~~~---~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~a 383 (534)
..+. +.|+++.|++++.++++. ++++.++++|.|++. .++..++.+.+.|+++.|+++|.+ ..+++.|+++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 8888 699999999999877652 489999999999997 688899999999999999999987 4589999999
Q ss_pred HHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 384 L~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
|+||+. ++....+.+.|+++.|+.+++++++.+++.|+++|.+|+.+
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999995 56677889999999999999999999999999999999975
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=3.7e-25 Score=212.18 Aligned_cols=234 Identities=25% Similarity=0.352 Sum_probs=218.6
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHH
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARA 273 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~ 273 (534)
|+++.|+++|++++++++..|+++|.+++...+ ++..+++.|+++.|+++|++++..++..++++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 679999999999999999999999999998876 899999999999999999999999999999999999988 778889
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHcc-CCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~ 352 (534)
+.+.|+++.|+.++.++++.++..++++|+|++ ..++.+..+.+.|+++.+++++.+++. .++..++.+|.+++..++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999 567899999999999999999998886 899999999999999888
Q ss_pred HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
..+..+.+.|+++.|++++.+ +.++..++++|.+++. +.....+.+.|+++.|+.+++++++.+++.|+++|.+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 888899999999999999976 5689999999999997 455667889999999999999999999999999999998
Q ss_pred CC
Q 009471 429 TS 430 (534)
Q Consensus 429 ~~ 430 (534)
..
T Consensus 241 ~~ 242 (252)
T 4hxt_A 241 SG 242 (252)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.6e-25 Score=213.71 Aligned_cols=236 Identities=19% Similarity=0.285 Sum_probs=216.0
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN 231 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~ 231 (534)
...++.++..|++++++.+..|+..|.+++..++.++..+++.|+++.|+++|++++++++..|+++|.+++... +.+.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 345889999999999999999999998888777778888999999999999999999999999999999999854 5899
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (534)
.+++.|+++.|+.+|+++++.+++.|+++|.+|+.+++.+ ..+.+.|+++.|+.++.++++.++..++++|+|++..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999999999999998887 78899999999999999999999999999999999854
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L 387 (534)
+.+..+.+.|+++.|++++.+++. .++..++.+|.+++..++..+..+.+.|+++.|++++.+ +.++..|+++|.||
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777788899999999999998876 899999999999998888888888899999999999876 67889999999998
Q ss_pred hc
Q 009471 388 VG 389 (534)
Q Consensus 388 a~ 389 (534)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=9.3e-25 Score=209.36 Aligned_cols=234 Identities=25% Similarity=0.361 Sum_probs=218.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l 233 (534)
.++.++..|++++++.+..|+..|.+++..+++++..+++.|+++.|+++|++++++++..|+++|.+++.+ ++.+..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 478999999999999999999999999998888889999999999999999999999999999999999998 4589999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV 311 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~ 311 (534)
.+.|+++.|+.+|+++++.++..|+++|.+|+ .+++++..+.+.|+++.|+.++.++++.++..++++|+|++..+ +.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 56778888999999999999999999999999999999999854 66
Q ss_pred HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
+..+.+.|+++.|++++.+++. .++..++.+|.+++.+++..+..+.+.|+++.|++++++ +.+++.|+++|+||+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 6888899999999999998776 899999999999999888899999999999999999976 5689999999999997
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=8.3e-25 Score=210.22 Aligned_cols=233 Identities=17% Similarity=0.248 Sum_probs=213.7
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhHHH
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA 273 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~ 273 (534)
...+.+++.|++++++++..|+++|.++.. +++.+..+++.|+++.|+++|+++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458999999999999999999999976544 45588899999999999999999999999999999999997 5788889
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~ 352 (534)
+.+.|+++.|+.++.++++.++..++++|+|++.+++.+ ..+.+.|+++.|++++.+++. .++..++++|.+++..++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCh
Confidence 999999999999999999999999999999999998887 888899999999999998876 899999999999999888
Q ss_pred HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
..+..+.+.|+++.|++++++ +.++..|+++|++++. +.....+.+.|+++.|+.++.++++.+++.|+++|.+|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 888889999999999999976 5689999999999996 455667889999999999999999999999999999998
Q ss_pred C
Q 009471 429 T 429 (534)
Q Consensus 429 ~ 429 (534)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 5
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.3e-23 Score=220.84 Aligned_cols=353 Identities=13% Similarity=0.145 Sum_probs=277.6
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc-CCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCc--
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTA-TSPRIREKTVTVICSLAESGS-- 228 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~-- 228 (534)
....+.+...|..++.+.+..|++.|..+..+ ++.+..+++ .|.+..|+.+++. .+..+...++.+|.|++.+.+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 34566677777777777799999999999764 445556654 4669999999996 667899999999999988432
Q ss_pred -------------------------------------hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH
Q 009471 229 -------------------------------------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA 271 (534)
Q Consensus 229 -------------------------------------~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 271 (534)
++..+.+.|++++|+.+++++++.+++.|+++|.+|+.+++++
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3567778899999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHccCChH---HHHHHHHHHHHccCCchHHHHHH--h-hCcHHHHHHHhhcCCChh----------
Q 009471 272 RAIVGHGGVRPLIEICQTGDSV---SQAAAACTLKNISAVPEVRQMLA--E-EGIVSVMIKLLDCGILLG---------- 335 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~---~~~~a~~aL~nLa~~~~~~~~i~--e-~g~i~~L~~ll~~~~~~~---------- 335 (534)
..+++.|+++.|+.++.+++.. .+..|+.+|.++....+....+. . .|+++.|+++|..++...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999987654 89999999999986433333331 1 489999999998321101
Q ss_pred --H-HHHHHHHHHHHccCC----hHHHHHHHhc-CChHHHHHhhcC--CchHHHHHHHHHHhhc-CccH-HHHHhcC---
Q 009471 336 --S-KEYAAECLQNLTASN----ENLRRSVVSE-GGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQ-EVLISLG--- 400 (534)
Q Consensus 336 --v-~~~a~~~L~~La~~~----~~~~~~i~~~-g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~-~~l~~~~--- 400 (534)
. +..|+.+|.||+..+ +..|..++++ |+++.|.++|.+ +.+|..|++++.||+. +... ..+...+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 2 779999999999976 3567888885 999999999865 5689999999999998 4332 2333222
Q ss_pred ---cHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhc-CchHHHHHhhcC--CChHHHHHHHHHHHHhcCC-C
Q 009471 401 ---FFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEA-GCTPLLIKLLEA--KPNSVREVAAQAISSLVTL-P 472 (534)
Q Consensus 401 ---~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~-g~v~~Lv~ll~~--~~~~v~~~A~~aL~~L~~~-~ 472 (534)
.++.|+.++++++..+|+.|+++|.+++ .++...+.+.+. ++++.++.++++ ++++++.+++.++++|+.. +
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 3789999999999999999999999996 567788888776 799999999998 8999999999999999952 1
Q ss_pred -----cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHH
Q 009471 473 -----QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA 506 (534)
Q Consensus 473 -----~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~ 506 (534)
+....+..+.+....|.+.|..++..+....++-
T Consensus 732 ~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~ 770 (778)
T 3opb_A 732 DNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIP 770 (778)
T ss_dssp STTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHH
T ss_pred cCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHH
Confidence 2334555455667788888887643333333433
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.1e-22 Score=215.46 Aligned_cols=360 Identities=15% Similarity=0.143 Sum_probs=283.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l 233 (534)
+++.+...+.++..+....++-.+.+.++.+...|..+ ....++.|.+++++ ..+|..|+-+|+.+...+. ....+
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si 332 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL 332 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH
Confidence 45556666666655556677777777787777776555 56889999999976 4889999999999987553 11111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-CCChHHHHHHHcc-CChHHHHHHHHHHHHccCCch-
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE- 310 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~- 310 (534)
. ...+.+.+.|.+++.+.+..|++.|..++.+++.+..+.. .|.++.|+.+++. ++..+..-++.+|.|++...+
T Consensus 333 ~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 333 K--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp H--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred H--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 1 2467777888877766799999999999999999999887 5559999999995 778888999999999987321
Q ss_pred --------------------------------------HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471 311 --------------------------------------VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (534)
Q Consensus 311 --------------------------------------~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~ 352 (534)
++..+.+.|+++.|+.++.++++ .+++.++++|.+|+. ++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~-~~re~A~~aL~nLS~-d~ 488 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP-NCKQQVVRIIYNITR-SK 488 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCH-HHHHHHHHHHHHHHT-SG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCH-HHHHHHHHHHHHHcC-CH
Confidence 45667789999999999999887 899999999999996 68
Q ss_pred HHHHHHHhcCChHHHHHhhcC--Cc---hHHHHHHHHHHhhcCccHHHHHh----cCcHHHHHHHHhc--CC--------
Q 009471 353 NLRRSVVSEGGIRSLLAYLDG--PL---PQESAVGALRNLVGSVSQEVLIS----LGFFPRLVHVLKA--GS-------- 413 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~L~~--~~---~~~~a~~aL~~La~~~~~~~l~~----~~~i~~Lv~lL~~--~~-------- 413 (534)
.+|..+++.|+++.|++++.+ +. .+..|+.+|.+++...++..+.. .+.+++|+.+|.. +.
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 899999999999999999976 22 68999999999997545554432 4889999999972 21
Q ss_pred ---H-HHHHHHHHHHHHhcCCh-----hHHHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcch-HHHHhhC
Q 009471 414 ---L-GAQQAAASALCRVCTSA-----EMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC-REVKRDD 482 (534)
Q Consensus 414 ---~-~v~~~A~~aL~~la~~~-----~~~~~i~~~-g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~ 482 (534)
+ --+.+|+.+|.||+..+ +.++.++.. |+++.|.+++.+.+..+|..|++++++|+.++... ..++...
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 1 22779999999999764 567878885 99999999999999999999999999999887765 3554321
Q ss_pred -----CCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHH
Q 009471 483 -----KSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERL 522 (534)
Q Consensus 483 -----~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l 522 (534)
+.++.|+.+++.+ +...|..|.++|.+++.+.....+.+
T Consensus 649 ~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp SHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 2378999999886 55799999999999986544443333
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=189.71 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=175.1
Q ss_pred hhchHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-Cc
Q 009471 152 THGNTRELLARLQIGHL--EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~--~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~ 228 (534)
....++.++..|+++++ +.+..|+..|.+++..+++++..+++.|+||+|+++|+++++++|+.|+++|.+|+.. ++
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 45578999999999988 8888999999999999999999999999999999999999999999999999999985 46
Q ss_pred hhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc----------------cCC
Q 009471 229 CENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----------------TGD 291 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~----------------~~~ 291 (534)
++..+++.|++++|+++|.+ ++..+++.|+.+|++|+..++++..+.+ +++++|+.++. ..+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999999984 7899999999999999999999998887 47999987652 126
Q ss_pred hHHHHHHHHHHHHccC-CchHHHHHHh-hCcHHHHHHHhhcC-----CChhHHHHHHHHHHHHccC
Q 009471 292 SVSQAAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDCG-----ILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 292 ~~~~~~a~~aL~nLa~-~~~~~~~i~e-~g~i~~L~~ll~~~-----~~~~v~~~a~~~L~~La~~ 350 (534)
+.++..+.++|+||+. ++++|+.|.+ .|+|+.|+.+++.+ .+...+++|+.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998 4599999998 57889999999753 1226899999999999974
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=187.09 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=170.9
Q ss_pred CcHHHHHHHhcCCCH--HHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009471 196 SNIAALVQLLTATSP--RIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMA 271 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~--~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~ 271 (534)
-.++.|+++|+++++ +++..|+++|.+++..+ +++..+++.|+||+|+++|+++++.+++.|+++|.+|+. +++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 358999999999987 89999999999999654 589999999999999999999999999999999999997 58899
Q ss_pred HHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh---cCC------------Chh
Q 009471 272 RAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CGI------------LLG 335 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~---~~~------------~~~ 335 (534)
..+.+.|+|+.|+++|+ ++++.+++.++.+||||+..++++..|++. +++.|++++. ++. +.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 579999999999999999999999999875 6999988763 221 337
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------CchHHHHHHHHHHhhc
Q 009471 336 SKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVG 389 (534)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~~~~~a~~aL~~La~ 389 (534)
++++|..+|+||+..+++.|+.+.+. |+++.|+.+++. ...+++|+.+|+||+.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 89999999999999888899999876 567999999853 3478999999999986
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=2.4e-21 Score=180.61 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=173.5
Q ss_pred cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009471 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMA 271 (534)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~ 271 (534)
..|+.+.|+.+|++++++++..|+++|.+++..+ +.+..+++.|+++.|+++|+++++.+++.|+++|.+++. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 4588999999999999999999999999999655 588899999999999999999999999999999999995 57778
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~ 350 (534)
..+.+.|+++.|+.++.++++.++..++++|+|++.. ++.+..+.+.|+++.|++++.+++. .++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999974 4677788899999999999998876 8999999999999998
Q ss_pred ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 351 NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 351 ~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
++..+..+.+.|+++.|++++++ +.+++.|+++|.+|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88888888888888888888865 4678888888888764
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=3.6e-21 Score=179.41 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=180.3
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN 231 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~ 231 (534)
....+.++..|++++++.+..|+..|.+++..+++.+..+++.|+++.|+++|+++++++++.|+++|++++... +.+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 345678888899999999999999999999888999899999999999999999999999999999999999655 5889
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-c
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~ 309 (534)
.+++.|+++.|+.+|+++++.++..|+++|.+++.. ++....+.+.|+++.|+.++.++++.++..++++|+|++.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999965 55567888999999999999999999999999999999997 6
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
+.+..+.+.|+++.|++++.+++. .+++.|+.+|.+++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHhc
Confidence 888889999999999999998876 899999999999985
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=1e-19 Score=177.90 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=175.7
Q ss_pred hHHHHHHHHhcC------------CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHH-HhcCCCHHHHHHHHHHHH
Q 009471 155 NTRELLARLQIG------------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVIC 221 (534)
Q Consensus 155 ~i~~Ll~~L~~~------------~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~ 221 (534)
.++..+..|.+. +.+.+..|+..|.+++. +.++...+...|++++|+. +|+++++.+|+.|+++|+
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456667777653 34679999999999987 4457778888999999999 999999999999999999
Q ss_pred HhhcCCc-hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 009471 222 SLAESGS-CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAA 298 (534)
Q Consensus 222 ~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a 298 (534)
+++.+++ ++..+++.|++++|+.+|+++ +..+++.|+++|.+++.+ ++..+.+.+.||++.|+.+++++++.++..+
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9998775 889999999999999999964 889999999999999876 5557788899999999999999999999999
Q ss_pred HHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471 299 ACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 299 ~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
+++|.+++. .++.+..+++.|+++.|+.+|.+++. .+++.++.+|.+|+.+.+...
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~-~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh-hHHHHHHHHHHHHHhCChhHH
Confidence 999999987 46889999999999999999999887 899999999999998755443
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=1.3e-19 Score=177.22 Aligned_cols=221 Identities=18% Similarity=0.193 Sum_probs=183.4
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHH-HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh
Q 009471 292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK-LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY 370 (534)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~-ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~ 370 (534)
.+-+..|+..|.+++.+.++...+...|+++.++. +|.++++ .+++.|+++|++++.+++..++.+++.|+++.|+++
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~-~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 35678899999999998899999999999999999 9998886 899999999999999999999999999999999999
Q ss_pred hcC---CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchH
Q 009471 371 LDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTP 444 (534)
Q Consensus 371 L~~---~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~ 444 (534)
|++ +.++..|+++|+|++. +...+.+.+.|+++.|+.+|+++++.++..|+|+|.+++. +++.++.+.+.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 973 3589999999999997 3445678889999999999999999999999999999985 488999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcCCCcch-HHHHhhCCCHHH----HHhhcCCCC-chhHHHHHHHHHHhhch
Q 009471 445 LLIKLLEAKPNSVREVAAQAISSLVTLPQNC-REVKRDDKSVPN----LVQLLDPSP-QNTAKKYAVACLASLSP 513 (534)
Q Consensus 445 ~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~~~v~~----Lv~lL~~~~-~~~~k~~a~~~L~~L~~ 513 (534)
.|+.++.+++..+++.|+.+|.+|+...+.. +.+......+.. -...++..+ ..++.+++..++.+.-.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999774332 222221111211 123334332 34677888888877653
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=1.7e-14 Score=150.74 Aligned_cols=365 Identities=15% Similarity=0.161 Sum_probs=272.4
Q ss_pred hhchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc
Q 009471 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~ 228 (534)
....|+.|..+++++. .+.|+.|+..|..++++-+ ..+..++++.|+..|+.. |.++...++.+|.++...++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 3456999999998765 7889999999999986433 334568999999999874 68999999999987754322
Q ss_pred ------------------hhHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-h-hHHHHH-hCCChHHHHHH
Q 009471 229 ------------------CENWL-VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-E-MARAIV-GHGGVRPLIEI 286 (534)
Q Consensus 229 ------------------~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~-~~~~l~-~~g~i~~Lv~l 286 (534)
..+.+ .+.+.++.|+.+|++.+..++..+..+|..|+.+. + ....+. ..+|++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 11222 34578999999999999999999999999998663 3 456677 47999999999
Q ss_pred HccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCC---ChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471 287 CQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEG 362 (534)
Q Consensus 287 l~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (534)
|.+....+|..++..|.+|+.++ ++++.+.-+|+++.|+.++..+. ...+...|+.+|.||...|+.++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 99999999999999999999976 66666666999999999996433 225788999999999999999999999999
Q ss_pred ChHHHHHhhcC-Cc-------h---HHHHHHHHHHhhcC--------ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHH
Q 009471 363 GIRSLLAYLDG-PL-------P---QESAVGALRNLVGS--------VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAA 421 (534)
Q Consensus 363 ~l~~L~~~L~~-~~-------~---~~~a~~aL~~La~~--------~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~ 421 (534)
+++.|..+++. ++ . ...++.+++-|+.+ .+...+.+.|++..|++++.+. ...++..|+
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999864 11 1 12367777777763 2345778899999999999765 578999999
Q ss_pred HHHHHhcCC-hhHHHHHHhcC---------chHHHHHhhcC-CChHHHHHHHHHHHHhcCC-CcchHHHHhh------C-
Q 009471 422 SALCRVCTS-AEMKKLVGEAG---------CTPLLIKLLEA-KPNSVREVAAQAISSLVTL-PQNCREVKRD------D- 482 (534)
Q Consensus 422 ~aL~~la~~-~~~~~~i~~~g---------~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~------~- 482 (534)
.+++.+.++ +..+..+.+.. .+..|+.++.+ ...++|..|+.++...... ...+..+... +
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~ 414 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDA 414 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccccc
Confidence 999999865 77888886543 33334444554 4588899999999888744 4455555541 0
Q ss_pred --CCHH---HHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHH
Q 009471 483 --KSVP---NLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLER 521 (534)
Q Consensus 483 --~~v~---~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~ 521 (534)
..+. .|..-+-+. ++.--.+|..+|.++-.. +|+...+
T Consensus 415 ~~~~~s~g~ll~~~l~s~-d~~~~wfAavil~hll~~n~~~K~~~l~ 460 (651)
T 3grl_A 415 TGNTVSAGQLLCGGLFST-DSLSNWCAAVALAHALQENATQKEQLLR 460 (651)
T ss_dssp TTSSSCHHHHHHHHHTSS-CHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCCCCcchhhhhhhccC-chHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1111 123333332 223446788888888877 4555444
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=9e-13 Score=137.86 Aligned_cols=326 Identities=15% Similarity=0.148 Sum_probs=244.0
Q ss_pred chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChH-----------------hHHHH-hcCCcHHHHHHHhcCCCHHHH
Q 009471 154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEK-----------------NVLAV-MGRSNIAALVQLLTATSPRIR 213 (534)
Q Consensus 154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~-----------------~~~~i-~~~g~v~~Lv~lL~~~~~~v~ 213 (534)
..++.++..|+.+ |.+....++++|.++...+++ +...+ .+.++++.|+.+|++.+..+|
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR 139 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR 139 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence 4588899999764 778888899999888765432 11233 356889999999999999999
Q ss_pred HHHHHHHHHhhcCCc--hhHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-CCChHHHHHHHcc
Q 009471 214 EKTVTVICSLAESGS--CENWLVS-EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQT 289 (534)
Q Consensus 214 ~~A~~~L~~La~~~~--~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g~i~~Lv~ll~~ 289 (534)
..++..|..|+...+ .++.+.. .++++.|+.+|++....+|..+...|.+|+.+....+.++. .|+++.|+.+++.
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 999999999998765 5777774 49999999999999999999999999999998777666555 7999999999987
Q ss_pred CCh----HHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCCh-----hHHHH---HHHHHHHHccC------
Q 009471 290 GDS----VSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILL-----GSKEY---AAECLQNLTAS------ 350 (534)
Q Consensus 290 ~~~----~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~-----~v~~~---a~~~L~~La~~------ 350 (534)
+.. .+...|+.+|.||...+ .++..|.|.|+++.|..++..+... ....+ ++.++.-+...
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 544 67789999999999855 7999999999999999999754421 12233 67777777764
Q ss_pred ChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhc--CccHHHHHhcC---------cHHHHHHHHhcC-CH
Q 009471 351 NENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLG---------FFPRLVHVLKAG-SL 414 (534)
Q Consensus 351 ~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~--~~~~~~l~~~~---------~i~~Lv~lL~~~-~~ 414 (534)
...++..+.+.|+++.|++++-. ..++..|+.+++.+.+ +.+.+.+.... ++..|+.++.+. ..
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 23577888899999999998754 3478899999999988 34445554322 233344445444 47
Q ss_pred HHHHHHHHHHHHhcC-ChhHHHHHHhc----------Cch---HHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHH
Q 009471 415 GAQQAAASALCRVCT-SAEMKKLVGEA----------GCT---PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK 479 (534)
Q Consensus 415 ~v~~~A~~aL~~la~-~~~~~~~i~~~----------g~v---~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~ 479 (534)
.+|..|+.++..+.. +++.+..+... ..+ ..|..-+-+.++..--.|+.+|.++..+.+..|+..
T Consensus 380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~ 458 (651)
T 3grl_A 380 VLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQL 458 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999885 46666666543 001 123344445566444558888999988777666543
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.58 E-value=3.7e-14 Score=159.84 Aligned_cols=354 Identities=15% Similarity=0.121 Sum_probs=236.4
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (534)
...++.++..+..++++.|..|+..|..++...++.....++ +.++.++.++++.++.++..|+.++..+++....+..
T Consensus 214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence 456778888888999999999999999999877755333333 5788889999999999999999999999987654443
Q ss_pred HHh--cCCHHHHHHHH-----------cc-----------CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc
Q 009471 233 LVS--EGVLPPLIRLV-----------ES-----------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ 288 (534)
Q Consensus 233 l~~--~g~i~~Lv~lL-----------~~-----------~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~ 288 (534)
+.. ...++.++..+ .+ .+..++..|+.+|..++..... .+. ...++.+...+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhc
Confidence 211 13456666665 22 1234688899999988764221 111 123577888888
Q ss_pred cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471 289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (534)
Q Consensus 289 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (534)
++++.+|..++.+|.+++.+......-.-.++++.++..+.+.+. .++..++.++++++...........-...++.++
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 448 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999999999865321111125678899999988876 8999999999999862211000111123456666
Q ss_pred HhhcC--CchHHHHHHHHHHhhc--Ccc----HHHH-------Hh-----------------------------------
Q 009471 369 AYLDG--PLPQESAVGALRNLVG--SVS----QEVL-------IS----------------------------------- 398 (534)
Q Consensus 369 ~~L~~--~~~~~~a~~aL~~La~--~~~----~~~l-------~~----------------------------------- 398 (534)
+.+.+ +.++..|+++|.+++. ... ...+ ..
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~ 528 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 528 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 66654 5677888888888764 100 0000 00
Q ss_pred --------------------------------cCcH-------HHHHHHHhc-----------------CCHHHHHHHHH
Q 009471 399 --------------------------------LGFF-------PRLVHVLKA-----------------GSLGAQQAAAS 422 (534)
Q Consensus 399 --------------------------------~~~i-------~~Lv~lL~~-----------------~~~~v~~~A~~ 422 (534)
.++. +.++..++. .+.+++..++.
T Consensus 529 p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~ 608 (852)
T 4fdd_A 529 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608 (852)
T ss_dssp HHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHH
Confidence 0111 111111110 13345566666
Q ss_pred HHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchh
Q 009471 423 ALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNT 499 (534)
Q Consensus 423 aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~ 499 (534)
++..++.. .+...++.+.++++.+.+.+.++++.+|..+..++..++.. ......++. ..++.++..|+.+ +..
T Consensus 609 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~~-~~~ 685 (852)
T 4fdd_A 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPE-FIS 685 (852)
T ss_dssp HHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCTT-SHH
T ss_pred HHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCcc-chH
Confidence 66666643 44555555678899999999888899999999999999843 444444444 3677888888665 446
Q ss_pred HHHHHHHHHHhhchh
Q 009471 500 AKKYAVACLASLSPS 514 (534)
Q Consensus 500 ~k~~a~~~L~~L~~~ 514 (534)
++..|++++..++..
T Consensus 686 v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 686 VCNNATWAIGEISIQ 700 (852)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999988765
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.57 E-value=1.7e-13 Score=133.39 Aligned_cols=256 Identities=13% Similarity=0.048 Sum_probs=198.6
Q ss_pred hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH
Q 009471 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR 272 (534)
Q Consensus 193 ~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 272 (534)
.+.+.++.|+..|+++++.+|..|+.+|+.+.. .+.++.|+.+++++++.++..|+++|..+...++...
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 355789999999999999999999999999862 2358999999999999999999999999875443322
Q ss_pred HHHhCCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC
Q 009471 273 AIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN 351 (534)
Q Consensus 273 ~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~ 351 (534)
.+ ++.|. .++.++++.++..++.+|.++...... ....+++.++.++.+++. .++..++.+|.++..
T Consensus 90 ~l-----~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 90 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKST-NVRRATAFAISVIND-- 157 (280)
T ss_dssp HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC----
T ss_pred HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC--
Confidence 21 24444 245788999999999999998642110 123468889999988886 899999999998764
Q ss_pred hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 352 ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 352 ~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
...++.|+.++++ +.++..++.+|+.+... ....++.|+.++++.++.++..|+++|.++..
T Consensus 158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYD-------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 2478999999977 46899999999998532 12357899999999999999999999999862
Q ss_pred ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471 430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (534)
Q Consensus 430 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~ 509 (534)
...++.|+.++.+++ ++..|..+|..+.. ...++.|..++...+++.....++..|.
T Consensus 222 ----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 222 ----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp ----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 457889999998644 88999999998842 2467889999987655566666666553
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=1.5e-12 Score=126.49 Aligned_cols=251 Identities=14% Similarity=0.072 Sum_probs=196.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
..++.|+..|.++++..|..|+..|..+. + .+.++.|+.+++++++.+|..|+.+|+.+...+.....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~- 90 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN- 90 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence 35889999999999999999999999875 2 24688999999999999999999999999754432111
Q ss_pred HhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchH
Q 009471 234 VSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (534)
Q Consensus 234 ~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (534)
.++.|. .+++++++.++..++++|.++... +..... .++.|+..+.++++.++..++.+|.++..
T Consensus 91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHH-----HHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 234444 245778999999999999999742 222222 35889999999999999999999998754
Q ss_pred HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
.++++.|++++.+++. .++..++.+|..+...++. .++.|+..+++ +.++..|+.+|+++..
T Consensus 158 ------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNG-DVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp -------CCHHHHHHHHTCSSH-HHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHHHcCCCH-HHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 3589999999998886 8999999999998643332 36778888876 5689999999999863
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHH
Q 009471 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAIS 466 (534)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~ 466 (534)
...++.|+.++++++ ++..|+.+|.++.. ...++.|.+++. ..++++...+..+|.
T Consensus 222 ---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 222 ---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp ---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 357899999997755 88999999999864 256899999986 456777777777664
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.54 E-value=3.8e-14 Score=159.74 Aligned_cols=349 Identities=14% Similarity=0.115 Sum_probs=238.9
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHH-Hh---cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLA-VM---GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~-i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (534)
..++.++..+.++++..+..++..|..++.+.+..... .. -...++.++++++++++.+|..|+.+|..+....+.
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 46888999999999999999999999998754432211 00 013577788888888999999999999988765432
Q ss_pred hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (534)
...-.-...++.++..+.++++.++..++++|..++...... .... .+.++.++..+++.++.++..|+..+..++..
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 110011246788888999999999999999999998643221 1111 23567888888999999999999999999876
Q ss_pred chHHHHHHh--hCcHHHHHHHhh----------cC-----------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChH
Q 009471 309 PEVRQMLAE--EGIVSVMIKLLD----------CG-----------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365 (534)
Q Consensus 309 ~~~~~~i~e--~g~i~~L~~ll~----------~~-----------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~ 365 (534)
+..+..+.. ...++.+++.+. .+ ....++..+..+|..++...+. .++ ...++
T Consensus 287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~ 362 (852)
T 4fdd_A 287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILP 362 (852)
T ss_dssp TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHH
Confidence 544332211 345666766661 11 1114688899999998863221 111 12355
Q ss_pred HHHHhhcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hh--HHHHHH
Q 009471 366 SLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE--MKKLVG 438 (534)
Q Consensus 366 ~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~--~~~~i~ 438 (534)
.+.+.+.+ +..|+.|+.+|++++.... ..+ .-..+++.++..+++.++.|+..|++++.+++.. .. ....+
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~- 440 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL- 440 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH-
Confidence 66666665 5689999999999997321 121 2245788899999999999999999999999853 11 11122
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC-cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471 439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (534)
Q Consensus 439 ~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~ 513 (534)
.+.++.|++.+.+.++.+|..|+.+|.+++... .....+.. ..++.|+.+++... ......+..++.+++.
T Consensus 441 -~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~--~ll~~L~~~l~~~~-~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 441 -KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSKYQ-HKNLLILYDAIGTLAD 512 (852)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH--HHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH
Confidence 346888889898889999999999999998432 22233332 46677777776542 2344455666666653
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.53 E-value=4.9e-13 Score=143.71 Aligned_cols=341 Identities=15% Similarity=0.113 Sum_probs=236.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
..++.+...++..++.+|..|+..|..++...+.. ......++.+..+++++++.+|..|+.+|..++..-+.. .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 44555666678889999999999999998654322 112367889999999999999999999999998754321 1
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--hH
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EV 311 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~ 311 (534)
....+++.+..++++.+..+|..++.+|..++...... ......++.++.+++++++.+|..++.+|..++..- +.
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 23457888999999999999999999999997632111 112345789999999999999999999999887632 22
Q ss_pred HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
+....-..+++.+..++.+.+. .++..++.+|..++..... .......++.+..++++ +.++..++.++..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~-~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQ-HVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCH-HHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 2222335678888888888776 8999999999988752111 11223457778888866 4688888888888876
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (534)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~ 467 (534)
...... ....+++.+..++.+.+..++..++.++..++.. .+. .....++.+.+++.+.+..+|..|..++..
T Consensus 393 ~~~~~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 393 VIGIRQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp HSCHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred hcCHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 222222 2234678888888888888888888888888742 111 111246777777887788888888888888
Q ss_pred hcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 468 LVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 468 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
++...+.. .+. ...++.|+.++.+. +..+|..++.++..++..
T Consensus 468 l~~~~~~~-~~~--~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 468 LVEKFGKE-WAH--ATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHHCHH-HHH--HHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCch-hHH--HHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHh
Confidence 76432221 111 24556666655443 335666677766666543
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.53 E-value=2.3e-13 Score=146.21 Aligned_cols=344 Identities=10% Similarity=0.068 Sum_probs=248.1
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (534)
...++.++..++.+++..|..|+.+|..++...+.. ......++.+..+++++++.+|..++.+|+.++...+. .
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~ 276 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E 276 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c
Confidence 345677777788888999999999999987653321 11224688888899998999999999999999864321 1
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch
Q 009471 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE 310 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~ 310 (534)
.....+++.++.++++.++.++..|+.+|..++..- +..........++.+..++.+.++.+|..++.+|..++..-.
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 223456899999999999999999999999987642 211111223456888899999999999999999998875211
Q ss_pred HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV 388 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La 388 (534)
.......+++.+..++.++++ +++..++.++..+....... ......++.+.+++++ ..++..++.++..++
T Consensus 357 --~~~~~~~l~p~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 357 --KDNTIEHLLPLFLAQLKDECP-EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp --HHHHHHHTHHHHHHHHTCSCH-HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --HhHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 111234578888999987775 89999999998887532211 1123456777777766 457889999999988
Q ss_pred cCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471 389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (534)
Q Consensus 389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L 468 (534)
...... .....+++.++.++.+.+..++..|+.++..++..-... ......+|.|.+++.+++..+|..++.++..+
T Consensus 431 ~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 431 GQLGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred HHcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 611111 112346788888898999999999999999998541111 11245688888888888899999999999988
Q ss_pred cCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 469 VTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+..-+. ..+.. ..++.|+++++++ ...+|..++.+|..+...
T Consensus 508 ~~~~~~-~~~~~--~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 508 SEVCGQ-DITTK--HMLPTVLRMAGDP-VANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHH-HHHHH--HTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGG
T ss_pred HHhcCH-HHHHH--HHHHHHHhhCCCC-CchHHHHHHHHHHHHHHH
Confidence 743221 22332 5788888888765 447999999999998864
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.45 E-value=6.2e-12 Score=135.52 Aligned_cols=339 Identities=14% Similarity=0.140 Sum_probs=239.4
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-H
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-N 231 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-~ 231 (534)
...++.+...+.+.++.+|..|+.++..+...+++.. .+.+.++.+.++|.++++.++..|+.+|..++.+.+.. .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 4456778888899999999999999999988666432 22467899999999999999999999999999876421 0
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC---
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--- 307 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--- 307 (534)
.-...+.+..|++.+.+.++..+.....+|..++..++ .... .++.+..++++.++.++..|++++.++..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 11112346778888888899899888888888875433 2222 34777788889999999999999999874
Q ss_pred -CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHH
Q 009471 308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALR 385 (534)
Q Consensus 308 -~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~ 385 (534)
+++....+. ..+.+.++.++. ++. .++..++.+|..+....+.. +.. .+..++...++ ..++..++..+.
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~-~vr~~aL~~l~~i~~~~p~~----~~~-~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEP-EVQYVALRNINLIVQKRPEI----LKQ-EIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCH-HHHHHHHHHHHHHHHHCCST----TTT-CTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCc-cHHHHHHHHHHHHHHhChHH----HHH-HHHhheeccCChHHHHHHHHHHHH
Confidence 233333332 345677777664 444 89999999999998643321 111 12222222233 457888999999
Q ss_pred HhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 009471 386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA 464 (534)
Q Consensus 386 ~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~a 464 (534)
+++...+... +++.|..++.+.+.+++..++++|++++.. +.... .+++.|++++......++..+..+
T Consensus 344 ~l~~~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 344 RLASQANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp HTCCSSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCChhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHH
Confidence 9887554432 466777888888899999999999999854 33322 347888888888888888888888
Q ss_pred HHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHH
Q 009471 465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERL 522 (534)
Q Consensus 465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l 522 (534)
+..+....++. ....+..|.+.++....+.++..++++|...+.. +.++++.+
T Consensus 414 l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l 469 (591)
T 2vgl_B 414 IRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF 469 (591)
T ss_dssp HHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH
Confidence 88876433321 1356788888887655556788888888887664 34444444
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.31 E-value=6e-11 Score=127.82 Aligned_cols=253 Identities=17% Similarity=0.196 Sum_probs=174.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
+....++..+++.+.+.|.-+.-.+..++..+++... -.++.+.+-|+++++.+|..|+.+|+++.. ++....
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~~- 121 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITEY- 121 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHHH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHHH-
Confidence 3466778888899999998888888888876664421 347788888999999999999999999863 222223
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch-H
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE-V 311 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~-~ 311 (534)
+++.+.+++.+.++.+|..|+.++.++... ++... ..+.++.|..++.++++.++..|+.+|..++.... .
T Consensus 122 ----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 122 ----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp ----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred ----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 367899999999999999999999999764 33222 13456899999999999999999999999987432 1
Q ss_pred HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
...-...+.+..++..+.+.++ -.+...+.++..++..++.... ..++.+...+++ +.++..|++++..+..
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~-~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTE-WGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred cchhccHHHHHHHHHcCCCCCc-hHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 0000012335566666655554 5677777777777754443222 235556666654 5677888888888763
Q ss_pred -----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 390 -----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 390 -----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
++....+ -..+.+.|+.++ ++++.++..|+.+|..+.
T Consensus 269 ~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 269 LLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIV 310 (591)
T ss_dssp SCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHH
Confidence 1122221 233456666554 467778888877777776
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.31 E-value=7e-11 Score=109.56 Aligned_cols=186 Identities=20% Similarity=0.211 Sum_probs=156.1
Q ss_pred cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009471 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA 273 (534)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 273 (534)
+.+.++.|+++|+++++.+|..|+..|+.+.. ...++.|+++|+++++.++..|+++|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 34679999999999999999999999998764 2468999999999999999999999999753
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
.+.++.|+.++.++++.++..++.+|.++.. .+.++.|++++.+++. .++..++.+|.++..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCC----
Confidence 3467889999999999999999999998753 4578999999988876 899999999999863
Q ss_pred HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
...++.|..++++ +.++..++.+|+.+.. ...++.|..+++++++.|+..|..+|.++..+
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 2357888899876 4689999999999864 23678899999999999999999999999865
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=1.1e-10 Score=107.28 Aligned_cols=183 Identities=21% Similarity=0.217 Sum_probs=155.9
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009471 195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI 274 (534)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l 274 (534)
.+..+.++++|+++++.+|..|+.+|+.+.. .+.++.|++.|+++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 3668999999999999999999999998764 2458999999999999999999999998753
Q ss_pred HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (534)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (534)
...++.|+.++.++++.++..++.+|.++.. ...++.++.++.+++. .++..++.+|..+..
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC-----
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC-----
Confidence 2457889999999999999999999988753 4578889999988776 899999999999863
Q ss_pred HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
...++.|..++++ +.++..|+.+|+.+.. ...++.|..++++.++.++..|..+|.++.
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2457888999976 4689999999999853 236788999999999999999999999875
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.29 E-value=1.2e-09 Score=118.24 Aligned_cols=323 Identities=11% Similarity=0.062 Sum_probs=230.7
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (534)
.+.....+..+++.+.+.|+-+.-.+..++..+++... -.+..|.+-|+++++.+|..|+++|+++... +
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-~---- 138 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-E---- 138 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-H----
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-H----
Confidence 34567778888899999998888889999887765322 2478888899999999999999999999842 1
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h
Q 009471 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E 310 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~ 310 (534)
+ ...+++.+.++|++.++.++..|+.++.++... ++.. .+.++.+..++.+.++.++..|+.+|..++... +
T Consensus 139 ~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 139 M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 1 134588999999999999999999999999753 3322 255678888899999999999999999998753 3
Q ss_pred HHHHHHhhCcHHHHHHHhhc--------------CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---
Q 009471 311 VRQMLAEEGIVSVMIKLLDC--------------GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--- 373 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~~--------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--- 373 (534)
....+ ...++.++++|.+ -.++-.+...+.+|..++..++.... ...+.|.+++..
T Consensus 213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTET 285 (618)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCC
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccc
Confidence 22222 3668888877753 11235788899999999987665432 234444444421
Q ss_pred -----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHH
Q 009471 374 -----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIK 448 (534)
Q Consensus 374 -----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ 448 (534)
..+...|+.++..+... . .+.. ..++.|..++.+.++.++..|+.+|..++.. ....+ ....+.++.
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~--~-~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~--~~~~~~i~~ 357 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSE--S-GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAV--QRHRSTIVD 357 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCC--H-HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHH--GGGHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCC--H-HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHH--HHHHHHHHH
Confidence 24566777777776542 1 1211 3567888888888889999999999888743 11222 235677888
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 449 LLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 449 ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+++++..+|..|.++|..++ ...|...++ ..|...+... +.+.|..++.++..++..
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~-~~~nv~~iv------~eL~~~l~~~-d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALV-NGNNIRGMM------KELLYFLDSC-EPEFKADCASGIFLAAEK 415 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHC-CSSSTHHHH------HHHHHHHHHC-CHHHHHHHHHHHHHHHHS
T ss_pred HccCCChhHHHHHHHHHHHHc-ccccHHHHH------HHHHHHHHhC-CHHHHHHHHHHHHHHHHH
Confidence 888888899999999998885 345544443 4455455443 346888888888888764
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.28 E-value=9.4e-11 Score=108.67 Aligned_cols=187 Identities=22% Similarity=0.189 Sum_probs=155.3
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (534)
.+.++.|+..|+++++.++..|+..|..+.. ..+++.|+.++.++++.++..++.+|.++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 3568999999999999999999999998754 3567899999999999999999999988753
Q ss_pred HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccH
Q 009471 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQ 393 (534)
Q Consensus 316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~ 393 (534)
.+.++.+++++.++++ .++..++.+|..+.. ...++.|++++++ +.++..|+.+|+++..
T Consensus 80 --~~~~~~L~~~l~~~~~-~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred --HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 4678999999988886 899999999999864 2357888998876 4589999999999854
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc
Q 009471 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ 473 (534)
Q Consensus 394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 473 (534)
...++.|..++++.++.++..|+.+|.++.. ...++.|.++++++++.+|..|..+|.++.....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2468899999999999999999999999963 2357888899999999999999999999865443
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.28 E-value=2.2e-10 Score=128.82 Aligned_cols=341 Identities=15% Similarity=0.143 Sum_probs=230.4
Q ss_pred hHHHHHHHHhc-------CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 009471 155 NTRELLARLQI-------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 155 ~i~~Ll~~L~~-------~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~ 227 (534)
.++.++..+.. ++...+..+...|..++...++. ++. ..++.+.+.++++++.+|+.|+.+++.++...
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence 45555555553 22456778888888877533211 111 34667777788888999999999999999654
Q ss_pred c-h-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-------hhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 009471 228 S-C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-------EMARAIVGHGGVRPLIEICQTGDSVSQAAA 298 (534)
Q Consensus 228 ~-~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a 298 (534)
. . -.... ..+++.+++.+.+.++.++..+++++..++..- +.... .++.++..+.+. +.++..+
T Consensus 401 ~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-----~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 401 DKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG-----VVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp CHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH-----HHHHHHHHHTSC-HHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH-----HHHHHHHHhccC-hHHHHHH
Confidence 2 1 11111 246888999999999999999999999987531 12222 357888888775 8999999
Q ss_pred HHHHHHccCC------chHHHHHHhhCcHHHHHHHhhcCCC-hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471 299 ACTLKNISAV------PEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL 371 (534)
Q Consensus 299 ~~aL~nLa~~------~~~~~~i~e~g~i~~L~~ll~~~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L 371 (534)
+++|.+++.. +.....+ ..+++.+++++.+.+. ..++..++.++..++...+......+. ..++.+++.+
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l 550 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKL 550 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHH
Confidence 9999988753 1121111 3457788888875432 378999999999998743322211221 2445555554
Q ss_pred cC-----------------CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCC-
Q 009471 372 DG-----------------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTS- 430 (534)
Q Consensus 372 ~~-----------------~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~~- 430 (534)
.+ +.++..++.+|.+++. ...... .-..+++.++..+++.+. .+++.+..++..++..
T Consensus 551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence 31 2356788999999887 211111 113467778888888776 8999999999999854
Q ss_pred -hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC-cchHHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHH
Q 009471 431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVAC 507 (534)
Q Consensus 431 -~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~ 507 (534)
.+...++ ...+|.|.+.+.++++.++..+..++..++... .....+.. ..++.+++.+++. .+..+|..+..+
T Consensus 630 ~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~ 705 (861)
T 2bpt_A 630 GKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSV 705 (861)
T ss_dssp GGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred hhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHH
Confidence 4455555 347899999998888899999999999888432 33344443 4667777888654 235799999999
Q ss_pred HHhhchh
Q 009471 508 LASLSPS 514 (534)
Q Consensus 508 L~~L~~~ 514 (534)
+..++..
T Consensus 706 l~~l~~~ 712 (861)
T 2bpt_A 706 FGDIASN 712 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888865
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.25 E-value=2.1e-09 Score=116.33 Aligned_cols=325 Identities=13% Similarity=0.080 Sum_probs=238.1
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
+...+.++-..+++++...|.+++..|..+..-..+. ..+....++++.+++...+..+--.+..++..++...
T Consensus 32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~ 105 (618)
T 1w63_A 32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH 105 (618)
T ss_dssp HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH
Confidence 4455666667788878778888888777764322111 1356667788889999999888888888887654211
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-Cch
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPE 310 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~ 310 (534)
. -++..+.+-|+++++.++..|.++|+++.. ++....+ ++.+..++.+.++.+|..|+.++.++.. .++
T Consensus 106 ~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~l-----~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 106 L----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRDL-----AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp H----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHHH-----HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred H----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 1 247888889999999999999999999974 4444443 4888999999999999999999999986 343
Q ss_pred HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-----------------C
Q 009471 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-----------------G 373 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-----------------~ 373 (534)
.. .+.++.+.+++.+.+. .++..|+.+|..++..++.....+ ...++.++++|. +
T Consensus 176 ~v-----~~~~~~l~~lL~D~d~-~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~ 247 (618)
T 1w63_A 176 LM-----EMFLPATKNLLNEKNH-GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISD 247 (618)
T ss_dssp GG-----GGGGGGTTTSTTCCCH-HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred HH-----HHHHHHHHHHhCCCCH-hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence 22 2567778888887776 899999999999998655432222 256777777653 3
Q ss_pred CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc------CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHH
Q 009471 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA------GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLI 447 (534)
Q Consensus 374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv 447 (534)
|..+...+.+|+.++..+.. ....+++.|..++.. .+..+...|++++..+...+..+. .+++.|.
T Consensus 248 ~~~q~~il~~L~~l~~~~~~---~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~ 319 (618)
T 1w63_A 248 PFLQVRILRLLRILGRNDDD---SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHHHHTTTCHH---HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence 56788899999999873211 123455666666532 245899999999999876544332 3578899
Q ss_pred HhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 448 KLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 448 ~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.++.+.++++|..|+.+|..++... ...++ .....++.++.++ +..+|..++.+|..++..
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIVDCLKDL-DVSIKRRAMELSFALVNG 380 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHHHHccCC-ChhHHHHHHHHHHHHccc
Confidence 9999999999999999999997532 23444 3567888888875 457999999999999876
No 55
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=3.4e-10 Score=104.03 Aligned_cols=182 Identities=23% Similarity=0.188 Sum_probs=154.7
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA 316 (534)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (534)
+..+.+++.|+++++.++..|+.+|..+.. ...++.|+.++.++++.++..++.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 458899999999999999999999998754 2457899999999999999999999988753
Q ss_pred hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHH
Q 009471 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQE 394 (534)
Q Consensus 317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~ 394 (534)
.+.++.++.++.++++ .++..++.+|..+.. ...++.|..++++ +.++..|+.+|+.+..
T Consensus 75 -~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred -HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3578999999988776 899999999999864 2357888888876 4589999999999864
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
...++.|..++.+.++.++..|+.+|.++.. ...++.|..++.++++.+|..|..+|..+-
T Consensus 137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999953 235788889999999999999999999874
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.21 E-value=8.1e-10 Score=124.17 Aligned_cols=347 Identities=11% Similarity=0.108 Sum_probs=228.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--HH
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE--NW 232 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--~~ 232 (534)
++.+...+.+.+...|..|+..+..++.... +.....+. ..++.++..++++++.+|..++++++.++..-... ..
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 3334444567788999999999999986542 33333333 57889999999999999999999999998642100 00
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh------hHHHHHhCCChHHHHHHHccCC--hHHHHHHHHHHHH
Q 009471 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE------MARAIVGHGGVRPLIEICQTGD--SVSQAAAACTLKN 304 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~------~~~~l~~~g~i~~Lv~ll~~~~--~~~~~~a~~aL~n 304 (534)
-.-..+++.++..+++. +.++..++++|.+++..-. ....+ ...++.|+.++.+.+ +.++..++.++..
T Consensus 450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 01123478888888876 8899999999999875311 11111 123577888887544 7889999999998
Q ss_pred ccCCc--hHHHHHHhhCcHHHHHHHhhcC--------------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471 305 ISAVP--EVRQMLAEEGIVSVMIKLLDCG--------------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (534)
Q Consensus 305 La~~~--~~~~~i~e~g~i~~L~~ll~~~--------------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (534)
+.... +....+ ...++.+++.+... ....++..++.+|.+++...+..-.. +-...++.++
T Consensus 527 l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~ 603 (861)
T 2bpt_A 527 MVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFF 603 (861)
T ss_dssp HHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHH
T ss_pred HHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHH
Confidence 87632 222222 23566677666532 11246778899999888643321000 1123456666
Q ss_pred HhhcC--C-chHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcC
Q 009471 369 AYLDG--P-LPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAG 441 (534)
Q Consensus 369 ~~L~~--~-~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g 441 (534)
..+++ + .+++.++.++..++. ........ ..+++.++..+++.++.++..++.++..++.. .+...++ ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HH
Confidence 77755 4 689999999999986 22222222 34788899999888889999999999998853 3444444 45
Q ss_pred chHHHHHhhcCCC--hHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCc----------hhHHHHHHHHH
Q 009471 442 CTPLLIKLLEAKP--NSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQ----------NTAKKYAVACL 508 (534)
Q Consensus 442 ~v~~Lv~ll~~~~--~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~----------~~~k~~a~~~L 508 (534)
.++.+.+.+.+.+ .+++..+..++..++.. .++...+.. ..++.+++.++..++ ..++..++.++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 6788888887654 88999999999999854 445555554 467888888875321 23566666666
Q ss_pred Hhhchh
Q 009471 509 ASLSPS 514 (534)
Q Consensus 509 ~~L~~~ 514 (534)
..++..
T Consensus 759 ~~i~~~ 764 (861)
T 2bpt_A 759 VGIVAG 764 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666533
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.19 E-value=9.8e-11 Score=121.69 Aligned_cols=349 Identities=13% Similarity=0.110 Sum_probs=227.3
Q ss_pred hHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHH--------HH---hcCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 009471 155 NTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVL--------AV---MGRSNIAALVQLLTATSPRIREKTVTVIC 221 (534)
Q Consensus 155 ~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~--------~i---~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~ 221 (534)
++..|+..+..+ ++..|..|+..|.++......... .+ .....-..|+..|.++++.+ ..++.++.
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~ 114 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHH
Confidence 345566666654 678899999999998754311100 00 01123456778888887777 88889999
Q ss_pred HhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHHHccC--ChHHH
Q 009471 222 SLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTG--DSVSQ 295 (534)
Q Consensus 222 ~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~--~~~~~ 295 (534)
.++....... .-.+.++.|+..+.++ ++.+++.++.+|..++... +...... ...++.++..+.+. ++.+|
T Consensus 115 ~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 115 GIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHH
Confidence 9986531100 1246799999999998 8999999999999997632 1100000 12457888888887 78999
Q ss_pred HHHHHHHHHccCCc-hHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC
Q 009471 296 AAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373 (534)
Q Consensus 296 ~~a~~aL~nLa~~~-~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~ 373 (534)
..++.++.++...- +.. ......-+++.+.+.+.+.+. .++..++.+|..++...+..-...+....++.++..+++
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999876421 111 011112245666666666665 899999999999986443211111111455666666655
Q ss_pred --CchHHHHHHHHHHhhcCc-cH------------------HHHHh---cCcHHHHHHHHhcC-------CHHHHHHHHH
Q 009471 374 --PLPQESAVGALRNLVGSV-SQ------------------EVLIS---LGFFPRLVHVLKAG-------SLGAQQAAAS 422 (534)
Q Consensus 374 --~~~~~~a~~aL~~La~~~-~~------------------~~l~~---~~~i~~Lv~lL~~~-------~~~v~~~A~~ 422 (534)
+.++..++.++.+++... .. ..+.+ ..+++.++..+... +..++..|+.
T Consensus 271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence 568889999988887621 00 00111 23466666666432 3478999999
Q ss_pred HHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc--chHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471 423 ALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--NCREVKRDDKSVPNLVQLLDPSPQNTA 500 (534)
Q Consensus 423 aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~--~~~~~~~~~~~v~~Lv~lL~~~~~~~~ 500 (534)
+|..++..-. ...+ ...++.+...+.+.+..+|..|+.+|..++.... ...... ...++.++.+|.+. +..+
T Consensus 351 ~L~~l~~~~~-~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~-~~~V 424 (462)
T 1ibr_B 351 CLMLLATCCE-DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP-SVVV 424 (462)
T ss_dssp HHHHHHHHTT-TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCS-CHHH
T ss_pred HHHHHHHhcc-HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCC-CHHH
Confidence 9999885311 1111 2357788888888999999999999999985432 112222 35788899999775 4579
Q ss_pred HHHHHHHHHhhchh
Q 009471 501 KKYAVACLASLSPS 514 (534)
Q Consensus 501 k~~a~~~L~~L~~~ 514 (534)
|..|+++|.+++..
T Consensus 425 r~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 425 RDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999865
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.18 E-value=1.5e-09 Score=122.11 Aligned_cols=350 Identities=15% Similarity=0.110 Sum_probs=233.0
Q ss_pred chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc
Q 009471 154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~ 228 (534)
..++.++..+.++ ++..+..++..|..++..- ++..... -...++.+...++++ +..+|..|+.++..+...-+
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888 8999999999999998642 2211111 124577788888877 68999999999999876422
Q ss_pred -h-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471 229 -C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (534)
Q Consensus 229 -~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (534)
. ........+++.+...+.+.+..++..++.+|..+... ++.-........++.++..+.+.++.++..++..+.++
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 11111122577777788888899999999999998754 22222222336678888888888899999999988888
Q ss_pred cCCchH-----H--------------HHH--HhhCcHHHHHHHhhc-------CCChhHHHHHHHHHHHHccCChHHHHH
Q 009471 306 SAVPEV-----R--------------QML--AEEGIVSVMIKLLDC-------GILLGSKEYAAECLQNLTASNENLRRS 357 (534)
Q Consensus 306 a~~~~~-----~--------------~~i--~e~g~i~~L~~ll~~-------~~~~~v~~~a~~~L~~La~~~~~~~~~ 357 (534)
+..... . ..+ .-...++.+++.+.. .+. .++..+..+|..++...+. .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~---~ 362 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCED---D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcH---h
Confidence 753200 0 000 013456777777742 233 6889999999998863221 1
Q ss_pred HHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hh
Q 009471 358 VVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE 432 (534)
Q Consensus 358 i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~ 432 (534)
++ ...++.+...+.+ +.+|..++.++++++.....+.+ .-..+++.++..+.+.++.++..|++++.+++.. +.
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 11 1234455555655 45899999999999973222211 1245788999999999999999999999999853 22
Q ss_pred ---HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc---------------chHHHHhhCCCHHHHHhhcCC
Q 009471 433 ---MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ---------------NCREVKRDDKSVPNLVQLLDP 494 (534)
Q Consensus 433 ---~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~---------------~~~~~~~~~~~v~~Lv~lL~~ 494 (534)
....+ ...++.|+..+.+. +.++..++.+|.+++.... ....+.. ..++.|++.+..
T Consensus 442 ~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~il~~L~~~l~~ 516 (876)
T 1qgr_A 442 AAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTDR 516 (876)
T ss_dssp GTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH--HHHHHHHHHTTS
T ss_pred hcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH--HHHHHHHHHHhC
Confidence 11222 24577888888764 8899999999999984321 1122222 356777788765
Q ss_pred CC--chhHHHHHHHHHHhhchh
Q 009471 495 SP--QNTAKKYAVACLASLSPS 514 (534)
Q Consensus 495 ~~--~~~~k~~a~~~L~~L~~~ 514 (534)
.. +..++..+..++..++..
T Consensus 517 ~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 517 PDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp CSSCSTTHHHHHHHHHHHHHHT
T ss_pred cCcchhhHHHHHHHHHHHHHHH
Confidence 42 235777777777777654
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.15 E-value=1.1e-10 Score=121.30 Aligned_cols=304 Identities=18% Similarity=0.117 Sum_probs=207.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCC-c-hhHH
Q 009471 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESG-S-CENW 232 (534)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~-~-~~~~ 232 (534)
..++..|.+.++.. ..++..+..++..+.... .-.+.++.|+..++++ ++.+++.++.+|..++.+- + .-..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 34666777776666 778888888875421100 1246799999999998 8999999999999998743 1 1011
Q ss_pred HHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-hhhH--HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 233 LVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMS-AEMA--RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~-~~~~--~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
. -..+++.++..+++. +..++..|+.++.++... .++. +.+ ..-.++.+...+.++++.++..++.+|..++.
T Consensus 169 ~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 169 K-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp G-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 1 123678889999887 789999999999987542 1111 101 01124666677778899999999999998885
Q ss_pred Cc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH-----------------HHHHh---cCChHH
Q 009471 308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-----------------RSVVS---EGGIRS 366 (534)
Q Consensus 308 ~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~-----------------~~i~~---~g~l~~ 366 (534)
.. +.-......++++.++..+.+.++ .++..++..+..++....... ..+++ ...++.
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSH-HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 22 111111111677777777777665 899999999998875311000 00110 224556
Q ss_pred HHHhhcC---------CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh--h-HH
Q 009471 367 LLAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA--E-MK 434 (534)
Q Consensus 367 L~~~L~~---------~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~--~-~~ 434 (534)
+++.+.+ ..++..|..+|..++.... +.+. ..+++.+...+.+.+..++..|+.+++.++... + ..
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 403 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6666632 3578999999999987211 1222 346777778888899999999999999999642 2 22
Q ss_pred HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 435 ~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
..+ ...+|.++.++.++++.+|..|+++|..++..
T Consensus 404 ~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 404 PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 222 56899999999999999999999999999844
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.13 E-value=1.4e-09 Score=122.37 Aligned_cols=346 Identities=14% Similarity=0.105 Sum_probs=224.8
Q ss_pred chHHHHHHHHhc-------CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQI-------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~-------~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (534)
..++.++..+.. ++...|..|...|..++...++. ++. ..++.+...++++++.+|+.|+.+++.++..
T Consensus 321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 345556666642 24456777888887776543321 122 4566777788888999999999999999976
Q ss_pred Cc-h-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh----HHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 009471 227 GS-C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM----ARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300 (534)
Q Consensus 227 ~~-~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~----~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~ 300 (534)
.. . ... .-..+++.++..+++.++.++..|+++|.+++..... ...+ ...++.|+..+.+. +.++..+++
T Consensus 397 ~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 397 PEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp SCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHH
Confidence 43 1 111 1234789999999999999999999999999764211 0111 12357788888774 889999999
Q ss_pred HHHHccCCch----------------HHHHHHhhCcHHHHHHHhhcCC--ChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471 301 TLKNISAVPE----------------VRQMLAEEGIVSVMIKLLDCGI--LLGSKEYAAECLQNLTASNENLRRSVVSEG 362 (534)
Q Consensus 301 aL~nLa~~~~----------------~~~~i~e~g~i~~L~~ll~~~~--~~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (534)
+|.+++.... ....+ ..+++.++..+...+ ...++..+..++..++...+...... -..
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-~~~ 549 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA-VQK 549 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHH-HHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHH-HHH
Confidence 9999875311 11111 346777888876542 22678888899988886432211111 112
Q ss_pred ChHHHHHhhc----------C-------CchHHHHHHHHHHhhcCccHHHHH--hcCcHHHHHHHHhcCC--HHHHHHHH
Q 009471 363 GIRSLLAYLD----------G-------PLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGS--LGAQQAAA 421 (534)
Q Consensus 363 ~l~~L~~~L~----------~-------~~~~~~a~~aL~~La~~~~~~~l~--~~~~i~~Lv~lL~~~~--~~v~~~A~ 421 (534)
.++.+++.+. + ++++..++.++..++..-....+. -..+++.++.++++.+ +.++..++
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence 3444444332 1 234677888898888732212221 2346777888887664 47899999
Q ss_pred HHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCC-C
Q 009471 422 SALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAK-PNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPS-P 496 (534)
Q Consensus 422 ~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~-~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~-~ 496 (534)
.++..++.. ..+..++ ..+++.|...+.+. ++.++..|..++..++.. ......+.. ..++.++..+.++ .
T Consensus 630 ~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~ 705 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD--EVMQLLLENLGNENV 705 (876)
T ss_dssp HHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhCCccc
Confidence 999999853 3333333 23578888888866 889999999999999843 233334443 5677888888873 3
Q ss_pred chhHHHHHHHHHHhhchh
Q 009471 497 QNTAKKYAVACLASLSPS 514 (534)
Q Consensus 497 ~~~~k~~a~~~L~~L~~~ 514 (534)
+..++..+..++.+++..
T Consensus 706 ~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 706 HRSVKPQILSVFGDIALA 723 (876)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred cHHhhHHHHHHHHHHHHH
Confidence 446899999999998763
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.10 E-value=5.5e-10 Score=130.66 Aligned_cols=344 Identities=15% Similarity=0.126 Sum_probs=233.8
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
..+..++..+.+.|.+.|..|...|.+....+......-.....++.+++.|.++++.+|..|+.+|+.++..-+. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 4578889999999999999999999987754311000000114578889999988999999999999999875432 11
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH------HHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHcc
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA------RAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~------~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa 306 (534)
...+++.++..+.+++..+|..++.+|..++..-... ..-.....++.|+..+. ++++.++..++.+|.+++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1234788888888888889999999999887432111 00111234688999998 588999999999999987
Q ss_pred C--CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHH
Q 009471 307 A--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAV 381 (534)
Q Consensus 307 ~--~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~ 381 (534)
. .+.....+ ...++.++..+.+.+. .+|..++.+|..++...+. .+ -...++.+++.+.+ +..+..++
T Consensus 163 ~~~~~~l~~~~--~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 163 SRQGGLLVNFH--PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHTCSSCTTTH--HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHhHhHHHHHH--HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHH
Confidence 4 11111111 3457778888877765 8999999999999975432 11 22347777777743 35677888
Q ss_pred HHHHHhhcCccHHHHH--hcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC-----
Q 009471 382 GALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA----- 452 (534)
Q Consensus 382 ~aL~~La~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~----- 452 (534)
.+++.++..... .+. -..+++.++..+.+.++.++..++.++..++.. .+...++ ...++.+++.+..
T Consensus 236 ~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCC
Confidence 888888862111 121 246789999999888899999999999988753 3333333 2234444444321
Q ss_pred --------------------------------CChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCCCCchh
Q 009471 453 --------------------------------KPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNT 499 (534)
Q Consensus 453 --------------------------------~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~ 499 (534)
....+|..|+.+|..++...+ ....++. ..++.++..+... ++.
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~d~-~~~ 389 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK--TVSPALISRFKER-EEN 389 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT--TTHHHHHSTTSCS-SSH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH--HHHHHHHHHcCCC-chH
Confidence 123578999999999986433 2345554 6788888888554 457
Q ss_pred HHHHHHHHHHhhch
Q 009471 500 AKKYAVACLASLSP 513 (534)
Q Consensus 500 ~k~~a~~~L~~L~~ 513 (534)
+|..+..++..+..
T Consensus 390 Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 390 VKADVFHAYLSLLK 403 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877764
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.09 E-value=8.4e-08 Score=103.50 Aligned_cols=328 Identities=14% Similarity=0.096 Sum_probs=230.1
Q ss_pred hhchHHHHHHHHhc---CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 152 THGNTRELLARLQI---GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~---~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
+...+.++-..+++ .+...+.+++..+..+..-..+ -..+....++++.+++...+..+--++..++..++
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~ 106 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS 106 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc
Confidence 34455556666664 3678888888887776432221 12457778889999999999999999999987664
Q ss_pred hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH--ccCChHHHHHHHHHHHHcc
Q 009471 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC--QTGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa 306 (534)
..-.+ ++..+.+=|.++++.++..|..+|+++.. ++..+.+ ++.+.+.+ .+.+|.+|..|+.++.++.
T Consensus 107 e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 107 ELIRL----INNAIKNDLASRNPTFMGLALHCIANVGS-REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp HHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 21111 36777788889999999999999999954 5555544 48888999 8899999999999999888
Q ss_pred C-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH----Hhhc---------
Q 009471 307 A-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL----AYLD--------- 372 (534)
Q Consensus 307 ~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~----~~L~--------- 372 (534)
. +|+.. ...+.++.+.+++.+.++ .++..|+.++..++..++..-. ..++.++ +++.
T Consensus 177 ~~~p~~~---~~~~~~~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 177 RTSPDLV---PMGDWTSRVVHLLNDQHL-GVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp HHCGGGC---CCCSCHHHHHHHTTCSCH-HHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTT
T ss_pred HhChhhc---CchhHHHHHHHHhCCCCc-cHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccch
Confidence 6 33221 124889999999987776 8999999999999976553211 1233333 3321
Q ss_pred ------CCchHHHHHHHHHHhhcCccHH---HHHhcCcHHHHHHHH---------hcCC--HHHHHHHHHHHHHhcCChh
Q 009471 373 ------GPLPQESAVGALRNLVGSVSQE---VLISLGFFPRLVHVL---------KAGS--LGAQQAAASALCRVCTSAE 432 (534)
Q Consensus 373 ------~~~~~~~a~~aL~~La~~~~~~---~l~~~~~i~~Lv~lL---------~~~~--~~v~~~A~~aL~~la~~~~ 432 (534)
+|..|...+..|..++..+..+ .+. .+++.++..+ ++.+ ..|..+++.++..+...++
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~ 325 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN 325 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH
Confidence 2456777788888777632221 111 2344444332 1223 3888899999999976555
Q ss_pred HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (534)
Q Consensus 433 ~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~ 512 (534)
..+. ++..|..++.+.++++|..|+..|..++...+. ..+++ .....++.+|..+++..+|..++.+|..++
T Consensus 326 ~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 326 LLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 4443 477888999889999999999999999866543 23444 457888888883335679999999999999
Q ss_pred hh
Q 009471 513 PS 514 (534)
Q Consensus 513 ~~ 514 (534)
..
T Consensus 398 ~~ 399 (621)
T 2vgl_A 398 DR 399 (621)
T ss_dssp CH
T ss_pred Ch
Confidence 66
No 63
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.02 E-value=2.4e-09 Score=117.01 Aligned_cols=192 Identities=14% Similarity=0.183 Sum_probs=152.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhhcC--hhhHHH
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMS--AEMARA 273 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~ 273 (534)
.+.++++.|++++++.|..|+.+|.+|+.+++.+..+...|++.+++. +|.+.+.+++..|+++|.||+.+ ++.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 456677889999999999999999999988788999999999987654 78889999999999999999864 677888
Q ss_pred HHhCCChHHHHHHHccCC---------------------hHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcC
Q 009471 274 IVGHGGVRPLIEICQTGD---------------------SVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCG 331 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~ 331 (534)
+...|++++|..+++... +.+...++.+|++|+... +....+.+.+.++.++..+.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 999999999999886411 123346788999999744 6777888889999999998433
Q ss_pred --CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH---HHHhhcC-CchHHHHHHHHHHhh
Q 009471 332 --ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS---LLAYLDG-PLPQESAVGALRNLV 388 (534)
Q Consensus 332 --~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~---L~~~L~~-~~~~~~a~~aL~~La 388 (534)
.+.+++..++.+|.+++.+++...+.+.+.+.... ++.+..+ ...+..+++.|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 33478999999999999999988888887665432 2222233 456778889999875
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.99 E-value=6.4e-08 Score=104.45 Aligned_cols=328 Identities=13% Similarity=0.124 Sum_probs=224.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
+.....+..+++.+.+.|+-+.-.+..++..+++.... .+..+.+=|+++++.+|..|+++|+++...+ ..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e-~~--- 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSRE-MA--- 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH-HH---
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCHH-HH---
Confidence 44677788889999999999988999998877754322 3677888888999999999999999996422 22
Q ss_pred HhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchH
Q 009471 234 VSEGVLPPLIRLV--ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (534)
Q Consensus 234 ~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (534)
..+++.+.+.| .+.++.++..|+.++.++....+. .+-..+.++.+..++.+.++.++..|+.++..++....
T Consensus 145 --~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~- 219 (621)
T 2vgl_A 145 --EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP- 219 (621)
T ss_dssp --HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH-
T ss_pred --HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh-
Confidence 23578899999 888999999999999998763221 11114778999999999999999999999999876321
Q ss_pred HHHHHhhCcHHHHH----HHhhcC-C-----------ChhHHHHHHHHHHHHccC-ChHHHHHHHhcCChHHHHHhhcC-
Q 009471 312 RQMLAEEGIVSVMI----KLLDCG-I-----------LLGSKEYAAECLQNLTAS-NENLRRSVVSEGGIRSLLAYLDG- 373 (534)
Q Consensus 312 ~~~i~e~g~i~~L~----~ll~~~-~-----------~~~v~~~a~~~L~~La~~-~~~~~~~i~~~g~l~~L~~~L~~- 373 (534)
..+ ...++.++ +++..+ . ++-.+...+..|..++.. ++..+..+.+ .++.+++.+.+
T Consensus 220 -~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 220 -EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp -HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred -HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 111 12344444 444332 1 224677888888888763 3455444432 23334433211
Q ss_pred C------------chHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcC
Q 009471 374 P------------LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAG 441 (534)
Q Consensus 374 ~------------~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g 441 (534)
+ .+...|+.++..+.. ... +.. ..+..|..++.+.++.++..|+..|..++........+ ..
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~-~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~ 368 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS--EPN-LLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KT 368 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHH-HHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HT
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC--cHH-HHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HH
Confidence 2 445566777776653 122 111 35778888898899999999999999998652212333 34
Q ss_pred chHHHHHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 442 CTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 442 ~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
....++..+. +.+..++..++..|..++ +..|...++. .|...+... +.+.+..++..+..++..
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv~------eL~~yl~~~-d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMC-DRSNAQQIVA------EMLSYLETA-DYSIREEIVLKVAILAEK 434 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHC-CHHHHHHHHH------HHHHHHHHC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHc-ChhhHHHHHH------HHHHHHHhc-CHHHHHHHHHHHHHHHHh
Confidence 5778888888 899999999999999995 5556555554 344444333 335777777777777644
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.93 E-value=3.7e-09 Score=115.58 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=148.4
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHH-HHHccCChHHHHHHHHHHHHccC--CchHHHH
Q 009471 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA--VPEVRQM 314 (534)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~ 314 (534)
.+.++++.|+++++..|..|+++|.+|+.++..+..+...|+|..++ .++.+.+.+++..|+++|+||+. +.+.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 35567788999999999999999999999888888899999998765 56888999999999999999996 4589999
Q ss_pred HHhhCcHHHHHHHhhcCCC--------------------hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-
Q 009471 315 LAEEGIVSVMIKLLDCGIL--------------------LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG- 373 (534)
Q Consensus 315 i~e~g~i~~L~~ll~~~~~--------------------~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~- 373 (534)
+.+.|+++.|..+++.... ..+.++++.+|.+|+..++.....+...++++.|+..+.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 9999999999999853110 0244578889999998888888888889999999998732
Q ss_pred ----CchHHHHHHHHHHhhcC--ccHHHHHhcCc---HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 374 ----PLPQESAVGALRNLVGS--VSQEVLISLGF---FPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 374 ----~~~~~~a~~aL~~La~~--~~~~~l~~~~~---i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
.+++..|+.+|.+++.. .....+.+.+. +..+..+. ..+...+..++++|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 35788999999999982 33445555543 33333333 333345677888888873
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.92 E-value=4.7e-08 Score=114.30 Aligned_cols=346 Identities=11% Similarity=0.082 Sum_probs=228.5
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE- 230 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~- 230 (534)
....++.++..|.+.+++.|..|+..|..++...+.. . . ...++.|+..+.++++.+|..|+.+|..++..-...
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~-~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q-V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H-H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H-H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3456778888888889999999999999998654431 1 1 135778888888888899999999999998643311
Q ss_pred -----HHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCh-----hhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 009471 231 -----NWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSA-----EMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299 (534)
Q Consensus 231 -----~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~-----~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~ 299 (534)
..-....+++.|+..++ ++++.++..|..+|..++... +.... .++.|+..+.++++.+|..++
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~-----ll~~l~~~L~~~~~~vR~~a~ 196 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-----ILTCLLPQLTSPRLAVRKRTI 196 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHH-----HHHHHGGGGGCSSHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHH-----HHHHHHHHHcCCcHHHHHHHH
Confidence 11123356899999998 478899999999999987421 11222 347777788888999999999
Q ss_pred HHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchH
Q 009471 300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ 377 (534)
Q Consensus 300 ~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~ 377 (534)
.+|..++..... .+ -...++.+++.+.+.....++..++.++..++...+..- .-.-...++.+++.+.+ +++|
T Consensus 197 ~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 197 IALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhcCCCHHHH
Confidence 999999874321 11 245688888888655432567778888888876322210 00113567777887755 7789
Q ss_pred HHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc-------------------------------------CCHHHHH
Q 009471 378 ESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA-------------------------------------GSLGAQQ 418 (534)
Q Consensus 378 ~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~-------------------------------------~~~~v~~ 418 (534)
+.++.++..++. +....... ..+++.++..+.. ....++.
T Consensus 273 ~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~ 351 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRR 351 (1230)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHH
Confidence 999999999887 22111111 1233333333211 1125788
Q ss_pred HHHHHHHHhcCC-hh-HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc----------------chHHHHh
Q 009471 419 AAASALCRVCTS-AE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ----------------NCREVKR 480 (534)
Q Consensus 419 ~A~~aL~~la~~-~~-~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~----------------~~~~~~~ 480 (534)
.|+.++..++.. ++ ....+ ...++.++..+.+.++.+|..+..++..++.... ++...+.
T Consensus 352 ~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1230)
T 1u6g_C 352 AAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ 429 (1230)
T ss_dssp HHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHH
T ss_pred HHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHH
Confidence 999999998864 32 34444 4568888888888889999999999887763211 1111111
Q ss_pred h--CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 481 D--DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 481 ~--~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
. ...++.+.+.+.+. +..++..++.+|..++..
T Consensus 430 ~~l~~ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 430 SQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence 0 13445556667765 346778888888877654
No 67
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.81 E-value=1.7e-06 Score=87.62 Aligned_cols=315 Identities=15% Similarity=0.145 Sum_probs=207.1
Q ss_pred chHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCh---HhHHHHhcCCc-HHHHHH-HhcCCCHHHHHHHHHHHHHhhcCC
Q 009471 154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSN-IAALVQ-LLTATSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~---~~~~~i~~~g~-v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~ 227 (534)
..+..++..|+ +.+.+.....+.-+.+++.+++ .....+.+... ...+.. ++..+++-....+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 35677888887 5678888888888888888776 44444443322 222333 333344566677776666665332
Q ss_pred chhHHHHhcCCHH--HHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCC--hHHHHHHHcc-------------
Q 009471 228 SCENWLVSEGVLP--PLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGG--VRPLIEICQT------------- 289 (534)
Q Consensus 228 ~~~~~l~~~g~i~--~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~--i~~Lv~ll~~------------- 289 (534)
..-... -...+. -++..|.. ++...+..++.+|..|...++.+..+.+.++ ++.++.+++.
T Consensus 157 ~~~~~~-l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKL-VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHH-HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhH-HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 210100 011122 34555655 3456677899999999999999999887554 5666554431
Q ss_pred --C--ChHHHHHHHHHHHHccCCchHHHHHHhhCcH--HHHHHHhhcCCChhHHHHHHHHHHHHccCCh----H-HHHHH
Q 009471 290 --G--DSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLGSKEYAAECLQNLTASNE----N-LRRSV 358 (534)
Q Consensus 290 --~--~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i--~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~----~-~~~~i 358 (534)
+ ...++..++-++|-|+..++....+...++. +.++.+++....+.+.+-++.+|.|+....+ . ..+.+
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~ 315 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 315 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHH
Confidence 1 2345789999999999999988888877754 6777888877766899999999999998552 1 22334
Q ss_pred HhcCChHHHHHhhcC-----CchHH-------HHHHHHHHhhc----------------Cc---------cHHHHHh--c
Q 009471 359 VSEGGIRSLLAYLDG-----PLPQE-------SAVGALRNLVG----------------SV---------SQEVLIS--L 399 (534)
Q Consensus 359 ~~~g~l~~L~~~L~~-----~~~~~-------~a~~aL~~La~----------------~~---------~~~~l~~--~ 399 (534)
+..++ .++++.|.. +++.+ .--..+..+++ +. +...+.+ .
T Consensus 316 ~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~ 394 (480)
T 1ho8_A 316 LLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNY 394 (480)
T ss_dssp HHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGG
T ss_pred HHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcch
Confidence 34444 445555532 22221 11111222221 10 1112222 2
Q ss_pred CcHHHHHHHHhc----------CCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471 400 GFFPRLVHVLKA----------GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (534)
Q Consensus 400 ~~i~~Lv~lL~~----------~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L 468 (534)
..+..|+++|.+ .++.+..-||.=|+.+++. |+.+..+.+.|+=..+++++.+++++|+..|+.|+..+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 347889999973 3688899999999999965 99999998889999999999999999999999999877
Q ss_pred cC
Q 009471 469 VT 470 (534)
Q Consensus 469 ~~ 470 (534)
..
T Consensus 475 m~ 476 (480)
T 1ho8_A 475 IG 476 (480)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.59 E-value=2.7e-07 Score=87.27 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=137.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHhc
Q 009471 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESGSCENWLVSE 236 (534)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (534)
.++..+.+.+...|..|+..|..++...++...... ...++.|...+. +++..++..|+.+++.++..-...-.-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 366778899999999999999999876432110000 134777888884 899999999999999998543211011123
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC--ch--HH
Q 009471 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PE--VR 312 (534)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~--~~ 312 (534)
.+++.++..+.+.+..+++.+..+|..+....... . .++.+...+++.++.+|..++..|..+... ++ ..
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~-~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE-A-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH-H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH-H-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 46999999999999999999999999998754322 2 247788889999999999999999996543 22 12
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
..+ ..+++.++.++.+... ++|..|..++..++.
T Consensus 172 ~~l--~~l~p~l~~~l~D~~~-~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 172 KLL--KLLTTSLVKTLNEPDP-TVRDSSAEALGTLIK 205 (242)
T ss_dssp HHH--HHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHH
Confidence 222 3578999999988886 899999999999885
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.56 E-value=1.5e-05 Score=88.68 Aligned_cols=292 Identities=14% Similarity=0.174 Sum_probs=208.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hh
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE 230 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~ 230 (534)
.+.+++..+...+...+..++..+.++...+... ..+..+.++.|.+.+.+.... +.|+.++..++.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 4556777777766666788888999887644211 112235677788877765433 999999999996543 22
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccC
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA 307 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~--~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~ 307 (534)
-.++ +.++.++....+....++..|..+...+.. +++....+ +|.|+..+.+. .|..+..|+.++..|+.
T Consensus 91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKAL-----LPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 2222 578888888888888899988888777743 34444444 49999988765 69999999999999986
Q ss_pred CchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc--CChHHHHHHHhcCChHHHHHhhcCCchHHHHHHH
Q 009471 308 VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGA 383 (534)
Q Consensus 308 ~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~a 383 (534)
.. ...+.. ..+||.+-+.+.+-.+ +++..|..++..+|. +|.+. +..+|.|++.+.+|+-...++..
T Consensus 164 ~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~~~~~~~~ 234 (986)
T 2iw3_A 164 AA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTEVPETVHL 234 (986)
T ss_dssp HS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTHHHHHHHH
T ss_pred Hh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhhhHHHHHH
Confidence 43 223322 6678888888877776 899999999999987 33332 23488999999988777777777
Q ss_pred HHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---h-hHHHHHHhcCchHHHHHhhc-CCChHH
Q 009471 384 LRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS---A-EMKKLVGEAGCTPLLIKLLE-AKPNSV 457 (534)
Q Consensus 384 L~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~---~-~~~~~i~~~g~v~~Lv~ll~-~~~~~v 457 (534)
|..-++ .+.....+. =++|.|.+-|+..+..+++.++.++.|||+- + +.+..+ ...+|.|.+... ..+|++
T Consensus 235 l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 235 LGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEA 311 (986)
T ss_dssp HTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHH
T ss_pred hhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHH
Confidence 777766 322221111 1467788888888999999999999999964 3 333333 456777777665 568999
Q ss_pred HHHHHHHHHHhc
Q 009471 458 REVAAQAISSLV 469 (534)
Q Consensus 458 ~~~A~~aL~~L~ 469 (534)
|+.+..++..|-
T Consensus 312 r~~~~~a~~~l~ 323 (986)
T 2iw3_A 312 REVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988888874
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.54 E-value=1.9e-06 Score=78.07 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=145.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l 233 (534)
.+.-++..|...|+..+..++..|-++++.-++......-...++.+++++++.|..+.-.|+++|..|-.+.+ ....+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 56677788899999999999999999998754433333334789999999999999999999999999988775 33333
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
.. +...+..+++++++-.++.++..+..+......+..+ ..+.+++.+.++.++..+..+|.|++...+...
T Consensus 114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~------~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVR------TYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHH------HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHH------HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 22 3788889999999999999999999994444344433 778899999999999999999999997432111
Q ss_pred HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~ 350 (534)
.+ .+++.-+-.++.+.++ .+++.|+.++-.+...
T Consensus 186 i~--~~I~~eI~elL~~eD~-~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 186 HL--TLILDEIPSLLQNDNE-FIVELALDVLEKALSF 219 (265)
T ss_dssp CG--GGTTTTHHHHHTCSCH-HHHHHHHHHHHHHTTS
T ss_pred HH--HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence 11 3345556778888876 8999999999999873
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.53 E-value=5.8e-06 Score=81.80 Aligned_cols=304 Identities=12% Similarity=0.086 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV 246 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL 246 (534)
++.....++..+..+....+....... ...-...++++.++|...+...--.+..++..++.. + =++..+.+=+
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl 113 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDM 113 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhc
Confidence 445455667766666543322111000 023455678999999999999988888888774321 1 3578888899
Q ss_pred ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHH
Q 009471 247 ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMI 325 (534)
Q Consensus 247 ~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~ 325 (534)
+++++.++..|.++|+++.. ++..+.+. +.+...+.+.+|.++..|+-+..+|... ++. + .+.+..+-
T Consensus 114 ~~~N~~iR~lALRtL~~I~~-~~m~~~l~-----~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~ 182 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQITD-STMLQAIE-----RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQ 182 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHCC-TTTHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHH
T ss_pred CCCcHhHHHHHHHHHhcCCC-HHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHH
Confidence 99999999999999999976 34444443 7788889999999999999998888763 342 2 36788899
Q ss_pred HHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-----CchHHHHHHHHHHhhcCccHHHHHhcC
Q 009471 326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNLVGSVSQEVLISLG 400 (534)
Q Consensus 326 ~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-----~~~~~~a~~aL~~La~~~~~~~l~~~~ 400 (534)
+++.+.++ .++.+|+.+|..+...+... +..++..+.. +..+...+..+..++..+ +.-....
T Consensus 183 ~ll~d~n~-~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d--~~~~~~~ 250 (355)
T 3tjz_B 183 EAASSDNI-MVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE--DGSRDSP 250 (355)
T ss_dssp HHTTCSSH-HHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred HHhcCCCc-cHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc--chhhHHH
Confidence 99988876 79999999999999755321 2333433322 222333333333333321 0112345
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
+++.+...|++.++.|..+|++++..+...+. ..+ ..++..|..++.+.++++|..|+..|..++...++ .++
T Consensus 251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---~v~ 323 (355)
T 3tjz_B 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---AVT 323 (355)
T ss_dssp ------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---HHH
Confidence 67788888899999999999999999865321 111 34577788888889999999999888888754333 333
Q ss_pred hCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (534)
Q Consensus 481 ~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~ 509 (534)
..-..+..++.++ +..+..+|+.+|.
T Consensus 324 --~~n~~ie~li~d~-n~sI~t~Aittll 349 (355)
T 3tjz_B 324 --ACNLDLENLVTDA-NRSIATLAITTLL 349 (355)
T ss_dssp -----------------------------
T ss_pred --HHHHHHHHHccCC-cHhHHHHHHHHhh
Confidence 2345567777765 3357677766654
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.42 E-value=6e-05 Score=82.90 Aligned_cols=296 Identities=17% Similarity=0.085 Sum_probs=191.7
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--------HHHHHHHHHHHHHhhcCCchhHHHHhc
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--------PRIREKTVTVICSLAESGSCENWLVSE 236 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (534)
++++..+.-|+.+|.-+-.+... ..+..|...|.+++ +.++..|+..|+.......+ .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e----- 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I----- 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H-----
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H-----
Confidence 45566677777777666543321 14667777776554 67888899999987543322 2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQML 315 (534)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (534)
.+++.|..++.+.+..+++.|+.+|..+-....+...+ ..|+..+ .+.+..+++.++.+|..+..+
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai------~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI------HDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH------HHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 23788889998887777888888888763332222222 4444443 355778888888888877653
Q ss_pred HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-C--CchHHHHHHHHHHhhcCcc
Q 009471 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVGALRNLVGSVS 392 (534)
Q Consensus 316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-~--~~~~~~a~~aL~~La~~~~ 392 (534)
+...++.+++.|....++.+|..++.+++.-..+..+.. .++.|++.+. + +.+|..|+-+|+.+...+
T Consensus 539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~- 609 (963)
T 4ady_A 539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD- 609 (963)
T ss_dssp -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-
T ss_pred -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-
Confidence 234577777887655544778888877775554333322 2666777653 3 568999999999887631
Q ss_pred HHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 393 QEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
...++.++..+ ++.++.++..|+.+|+.++.+.... ..+..|..+.++.+..||..|..+|..+...
T Consensus 610 ------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 610 ------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 23577777754 6789999999999999998542221 2367888889999999999999999999755
Q ss_pred Ccch--HHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHHHHhh
Q 009471 472 PQNC--REVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL 511 (534)
Q Consensus 472 ~~~~--~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L 511 (534)
..|. ..+.+ ....|....... .+...+..+..+..-+
T Consensus 678 tnna~~~rva~---~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 678 QTEKLNPQVAD---INKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp CCTTTCTTHHH---HHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CccccchHHHH---HHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4432 11111 223344444432 2334565555555444
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.31 E-value=0.00066 Score=59.10 Aligned_cols=211 Identities=18% Similarity=0.282 Sum_probs=154.4
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccC-CchHH
Q 009471 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISA-VPEVR 312 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~-~~~~~ 312 (534)
..++..++++|++.-..++.+|...+..++.. ++....+. ..|+-+++ ++.-........+++.++. .|+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~- 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL- 104 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH-
Confidence 35688999999999999999999999999876 44444443 56666654 4555565667778888775 3332
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--hHHHHHHHHHHhhcC
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVGS 390 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--~~~~a~~aL~~La~~ 390 (534)
+ .+.+|.++.=.+-+++ ..+.+...+|..++..++..-..+ +.-+..++.+++ -+-.|+.++..+..
T Consensus 105 ---v-~~vVp~lfanyrigd~-kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe- 173 (253)
T 2db0_A 105 ---V-KSMIPVLFANYRIGDE-KTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE- 173 (253)
T ss_dssp ---H-HHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT-
T ss_pred ---H-HhhHHHHHHHHhcCCc-cceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc-
Confidence 2 2346777777777876 899999999999999888776544 455777777654 34556666665554
Q ss_pred ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+....+ ..++|+|+.+|.+++.-|+..|..+|.+++. ++..|+.+.+ -++-+++.+..++....++|..+.
T Consensus 174 -n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 174 -NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp -TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred -cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHH
Confidence 233333 3489999999999999999999999999995 5777777522 344566788899999999998886
Q ss_pred CC
Q 009471 470 TL 471 (534)
Q Consensus 470 ~~ 471 (534)
.-
T Consensus 246 l~ 247 (253)
T 2db0_A 246 LL 247 (253)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.25 E-value=1.1e-07 Score=80.80 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=87.8
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009471 195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI 274 (534)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l 274 (534)
...++.++.+|+++++.+|..|+.+|+.+... .++.|+.+|++.++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 45688888899988889999988888766421 26888999999999999999999988753
Q ss_pred HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN 346 (534)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~ 346 (534)
...++.|+.++.++++.+|..++++|.++.. ..+++.|.+++.+.+. .++..++.+|.+
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~-~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG-FARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT-HHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHh
Confidence 1135888888889999999999999988752 3457888888887776 789888888764
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.5e-06 Score=79.12 Aligned_cols=183 Identities=8% Similarity=0.093 Sum_probs=133.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-HhhcChHhHHHHhc-CCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCC---chh-H
Q 009471 159 LLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMG-RSNIAALVQLL-TATSPRIREKTVTVICSLAESG---SCE-N 231 (534)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~-l~~~~~~~~~~i~~-~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~---~~~-~ 231 (534)
+...+++.+...|..|+..|.. ++.+.++....-.+ ...+..|.+.+ ++.+..++..|+.+|+.++..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456789999999999999999 88654432100001 13477788888 7889999999999999998522 111 1
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh------hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (534)
.. .-+++.++..+++....+++.+..+|..+..+- .+-.. .++.|+..+++.++.+|..++.+|..+
T Consensus 101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 11 235899999999999999999999888887632 11222 247888889999999999999999888
Q ss_pred cCCchH--HH--HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 306 SAVPEV--RQ--MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 306 a~~~~~--~~--~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
...... .. ......+++.+.+++.+.+. ++|..|..++..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~-~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP-AIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Confidence 753221 11 12225789999999988876 899999999999884
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.22 E-value=0.00028 Score=71.47 Aligned_cols=314 Identities=15% Similarity=0.133 Sum_probs=191.9
Q ss_pred hcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc---hhHHHHhcC--CHHHHHH-HHccCCHHHHHHHHHHHHHhh
Q 009471 193 MGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS---CENWLVSEG--VLPPLIR-LVESGSTVGKEKATISLQRLS 265 (534)
Q Consensus 193 ~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~---~~~~l~~~g--~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls 265 (534)
.+..++..++++|+.. +.++.+..+..+..+..+++ .+..++..+ ....+.. .+..++......++.++..++
T Consensus 74 ~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 74 VNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 3446688999999864 58999999999999988765 443343222 1122222 233334445566666656654
Q ss_pred cCh----hhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhC--cHHHHHHHhhcC-------
Q 009471 266 MSA----EMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEG--IVSVMIKLLDCG------- 331 (534)
Q Consensus 266 ~~~----~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g--~i~~L~~ll~~~------- 331 (534)
... +....+... +.++..+.. ++...+..++.+|..|...++.|..+.+.+ .++.++.++...
T Consensus 154 ~~~~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 154 QNGLHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp STTTCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred ccCCccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 221 111222210 135555555 245667789999999999999999987633 467776654311
Q ss_pred --------C-ChhHHHHHHHHHHHHccCChHHHHHHHhcCCh--HHHHHhhcC---CchHHHHHHHHHHhhcCc--cHH-
Q 009471 332 --------I-LLGSKEYAAECLQNLTASNENLRRSVVSEGGI--RSLLAYLDG---PLPQESAVGALRNLVGSV--SQE- 394 (534)
Q Consensus 332 --------~-~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l--~~L~~~L~~---~~~~~~a~~aL~~La~~~--~~~- 394 (534)
. ...++++++.|++.++.. +...+.+.+.+.. ..|+.+++. ..+...++.+|.|+.... ...
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 1 125689999999999984 4455556555533 456666654 457788999999999832 111
Q ss_pred ----HHHhcCcHHHHHHHHhcC---CHHHHHHHHH-------HHHHhcCChhHHH----------------HHHhc----
Q 009471 395 ----VLISLGFFPRLVHVLKAG---SLGAQQAAAS-------ALCRVCTSAEMKK----------------LVGEA---- 440 (534)
Q Consensus 395 ----~l~~~~~i~~Lv~lL~~~---~~~v~~~A~~-------aL~~la~~~~~~~----------------~i~~~---- 440 (534)
.++..++ .+++..|... |+++.+---. .+..++.-++++. .++.+
T Consensus 310 ~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k 388 (480)
T 1ho8_A 310 VIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE 388 (480)
T ss_dssp HHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred HHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence 1222334 5566666443 4544332221 1112221122222 22221
Q ss_pred ------CchHHHHHhhcC----------CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHH
Q 009471 441 ------GCTPLLIKLLEA----------KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA 504 (534)
Q Consensus 441 ------g~v~~Lv~ll~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a 504 (534)
..++.|++++.+ .++.+...|+.=+..++.+.++-+.++.+.|+=..+++++.++ ++++|..|
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~A 467 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEA 467 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHH
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHH
Confidence 267889999973 3577788888889999966666666777777766777888876 56899999
Q ss_pred HHHHHhhc
Q 009471 505 VACLASLS 512 (534)
Q Consensus 505 ~~~L~~L~ 512 (534)
+.++..+.
T Consensus 468 L~avQklm 475 (480)
T 1ho8_A 468 LKATQAII 475 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98886653
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.22 E-value=1.7e-05 Score=74.68 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=124.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcC-Cch-hHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471 199 AALVQLLTATSPRIREKTVTVICSLAES-GSC-ENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIV 275 (534)
Q Consensus 199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~-~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~ 275 (534)
+.+.+.+++.+...|..|+..|..+... +.. ...+ ..+++.|...+. +.+..++..|+.++..|+..-...-.-.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3477788889999999999999999875 221 0011 134778888894 8999999999999999985421100001
Q ss_pred hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHH
Q 009471 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENL 354 (534)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~ 354 (534)
-...++.++..+.+.++.+|..+..+|.++...... ..+++.+...+.+.++ .++..++..|..+.... +..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~-~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNP-SVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHcCCCC
Confidence 122468999999999999999999999998875432 2357778888888776 89999999999965432 221
Q ss_pred -HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 355 -RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 355 -~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
-...+ ...++.+..++.+ +.+|..|..+++.++.
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 01111 1345566666644 4566666666666664
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.20 E-value=0.00058 Score=75.25 Aligned_cols=288 Identities=16% Similarity=0.045 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHH
Q 009471 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT---ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRL 245 (534)
Q Consensus 169 ~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~l 245 (534)
..+..|+.+|.-+-..+. .+++..|-+.|. ++++.++.-|+.+|+.+...... . ++..|...
T Consensus 373 ~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~-----~~~lL~~~ 437 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D-----TTDYLKNI 437 (963)
T ss_dssp HHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H-----HHHHHHHH
T ss_pred HHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H-----HHHHHHHH
Confidence 344555555555544332 145666666665 56789999999999998665432 1 46778888
Q ss_pred HccCC--------HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471 246 VESGS--------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (534)
Q Consensus 246 L~~~~--------~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (534)
|.+.+ +.++..|+-.|.-......+... ++.|..++.+.+...+..++.+|..+-.+..+.
T Consensus 438 L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev------~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~----- 506 (963)
T 4ady_A 438 IVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEV------YEALKEVLYNDSATSGEAAALGMGLCMLGTGKP----- 506 (963)
T ss_dssp HHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHH------HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----
T ss_pred HcCccccccccccHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----
Confidence 87655 56777788888876443322222 366788887777777777777777654333222
Q ss_pred hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc---CCchHHHHHHHHHHhhc-CccH
Q 009471 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD---GPLPQESAVGALRNLVG-SVSQ 393 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~---~~~~~~~a~~aL~~La~-~~~~ 393 (534)
.++..|++.+.+.....++..++.+|+.+..+.+.. ++.+++.|. +|.+|..++.+++.-.. ..+.
T Consensus 507 -~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 507 -EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp -HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 234556665544444478999999999988766643 556666653 36678888888876554 3332
Q ss_pred HHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHh-hcCCChHHHHHHHHHHHHhcCC
Q 009471 394 EVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKL-LEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 394 ~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~A~~aL~~L~~~ 471 (534)
. .+..|++.+ .+.+..+++.|+.+|+.+.... ...++.++++ .++.++.+|..|..+|..+...
T Consensus 577 ~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 577 S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 2 356666665 4557899999999999987442 1346666664 4578999999999999999755
Q ss_pred CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.++. ..+..|..++++. +..++..|+.+|..+...
T Consensus 643 n~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 643 KGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTT
T ss_pred CCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcC
Confidence 4442 2345566666655 457999999999988764
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.18 E-value=3.9e-05 Score=75.92 Aligned_cols=275 Identities=14% Similarity=0.054 Sum_probs=154.7
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
......+..+++.|.+.|+-.--.+..++...++. + =.+..+.+=++++++-+|-.|+++|+++...+- -+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~~- 139 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQA- 139 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HHH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HHH-
Confidence 44566677888999999888888888877653322 1 247888888999999999999999999976652 222
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
+.+.+.+.|.+.++.++..|+.+..+|....+. ++ .+.+..+-+++.+.++.++.+|..+|..+...+.
T Consensus 140 ----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 140 ----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp ----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 367788888899999999999999998765322 12 2577889999999999999999999999987431
Q ss_pred HHHhhCcHHHHHHHhhcCC--ChhHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471 314 MLAEEGIVSVMIKLLDCGI--LLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV 388 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~~--~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La 388 (534)
..+..++.-+..+. .+-.+..-+..+..++..+ +.. ....++.+..++++ +.+.-.|+.++..+.
T Consensus 209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 13444455554432 1122333333333444333 121 23345666666765 557788888888875
Q ss_pred cCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 009471 389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (534)
Q Consensus 389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL 465 (534)
.. ..... ...+..|..++.+.++.+|..|+..|..+... |+. + ..+-..+.+++.+++..+...|.-.|
T Consensus 279 ~~--~~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~---v--~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 279 GC--SAKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA---V--TACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred CC--CHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH---H--HHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 51 11121 23466777888899999999999999998853 322 2 12355667788888777766665444
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.14 E-value=1.8e-05 Score=71.72 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=136.0
Q ss_pred ChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHH
Q 009471 279 GVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357 (534)
Q Consensus 279 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~ 357 (534)
.+..|..++.+.|+.++..++.+|..+-.. ++......-+..++.++.++.+.+. .+...|+.||..+-.+.+-....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dE-kval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENE-KVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHcCCCCCHHH
Confidence 457889999999999999999999998764 2333333335679999999988886 89999999999998864432222
Q ss_pred HHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHH
Q 009471 358 VVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435 (534)
Q Consensus 358 i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~ 435 (534)
+.+ ....+..++.+ +-.++.+...++.+-.... ..+++..+..++.+.++.++..+..++.+++...+...
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-----SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 221 24556666654 3468899999999833211 13467889999999999999999999999996422111
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471 436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (534)
Q Consensus 436 ~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 472 (534)
.+ .+.+..+-.+++++++.+++.|..+|-.+.+.+
T Consensus 186 i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 186 HL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 11 234556678899999999999999999998663
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=2.8e-07 Score=78.24 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=91.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.++.++..|++.++..|..|+..|..+-. ..++.|+.+|+++++.+|..|+++|+++...
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------- 72 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-------- 72 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH--------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH--------
Confidence 46677778888888888888877765421 2379999999999999999999999988631
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (534)
..++.|+..|++.++.++..|+++|.++.. ...++.|+.+++++++.++..++.+|.++
T Consensus 73 --~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 --RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 248999999999999999999999999863 12358899999999999999999998764
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.07 E-value=0.00059 Score=59.40 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=145.6
Q ss_pred CCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
...+..++++|.+.-|.++.+|...+.+++. .++....+ +..|+-+++....-........+++.++.-.++.-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 4456889999999999999999999999987 34444333 55577776554432455667788999887666543
Q ss_pred HHHHhcCChHHHHHhh--cCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhH
Q 009471 356 RSVVSEGGIRSLLAYL--DGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEM 433 (534)
Q Consensus 356 ~~i~~~g~l~~L~~~L--~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~ 433 (534)
.. ++|.++.-. .++..+.+..++|..++.. +++. -.+++.-+..++.+++..-+-.|+..+..+..+ +
T Consensus 106 ~~-----vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~ 175 (253)
T 2db0_A 106 KS-----MIPVLFANYRIGDEKTKINVSYALEEIAKA-NPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--S 175 (253)
T ss_dssp HH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--T
T ss_pred Hh-----hHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--C
Confidence 32 245555433 3477899999999999972 1111 234678888899999987777787777777643 3
Q ss_pred HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhh
Q 009471 434 KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511 (534)
Q Consensus 434 ~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L 511 (534)
-+++ ..++|.|..++++++.-+|..|.++|.+++...+..+.++. .. ++-++.. ++.+++.....|..+
T Consensus 176 ~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~-----~k-l~e~~D~-S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI-----KR-LEELNDT-SSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH-----HH-HHHCCCS-CHHHHHHHHHHHHHH
T ss_pred cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH-----HH-HHHhcCc-HHHHHHHHHHHHHHH
Confidence 4454 56799999999999999999999999999977665554443 22 3334443 234555554555444
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.05 E-value=0.00018 Score=69.48 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH-
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV- 234 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~- 234 (534)
+..++..|++++.+.++.++..|..+..++......++..+|+..|+....+.+...+..+++++.+|-.+.....-++
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 6778888899999999999999999887888899999999999999999999999999999999999988766554454
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHh-------CC---ChHHHHHHHc---cCChHHHHHHHH
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVG-------HG---GVRPLIEICQ---TGDSVSQAAAAC 300 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~-------~g---~i~~Lv~ll~---~~~~~~~~~a~~ 300 (534)
....|.-+..++.+.+..+...|...|..+...++ +...+.+ .. -...|+.+++ ..|.+++.++..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 44578888899998888999999999999977654 3322211 12 2778999997 678999988877
Q ss_pred HHHHccC-Cc--hHHHHHH----hhCcHHHHHHHhhcC
Q 009471 301 TLKNISA-VP--EVRQMLA----EEGIVSVMIKLLDCG 331 (534)
Q Consensus 301 aL~nLa~-~~--~~~~~i~----e~g~i~~L~~ll~~~ 331 (534)
.+-.+-. .+ +.+..+. +.|.-..+...+...
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 6654433 12 3233333 244444555555443
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.71 E-value=0.00098 Score=64.30 Aligned_cols=176 Identities=14% Similarity=0.154 Sum_probs=124.2
Q ss_pred HHHHHccCChHHHHHHHHHHHH-ccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc
Q 009471 283 LIEICQTGDSVSQAAAACTLKN-ISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361 (534)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~n-La~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~ 361 (534)
+++-|.+++...+..++.-|.. +..+.+....|++.+++.+|+.+...++. ..+..++.++.++....+.....+-+.
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g-N~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH-NYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh-HHHHHHHHHHHHHHhccccccchhCCH
Confidence 3444556667777788888888 66777999999999999999999998876 899999999999998544433333366
Q ss_pred CChHHHHHhhcC--CchHHHHHHHHHHhhc-Cc-cHHHHHh----------cCcHHHHHHHHh---cCCHHHHHHHHHHH
Q 009471 362 GGIRSLLAYLDG--PLPQESAVGALRNLVG-SV-SQEVLIS----------LGFFPRLVHVLK---AGSLGAQQAAASAL 424 (534)
Q Consensus 362 g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~-~~~~l~~----------~~~i~~Lv~lL~---~~~~~v~~~A~~aL 424 (534)
..|..+..++.+ ..+...|+..|..++. .+ +...+.+ ......|+.+|+ +.+.+++..|...|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 678888888876 4567889999999987 32 3332221 123788999997 77899999998877
Q ss_pred HHhcCC---hh----HHHHHHhcCchHHHHHhhcCC--ChHHHH
Q 009471 425 CRVCTS---AE----MKKLVGEAGCTPLLIKLLEAK--PNSVRE 459 (534)
Q Consensus 425 ~~la~~---~~----~~~~i~~~g~v~~Lv~ll~~~--~~~v~~ 459 (534)
..+-.. .+ ....+.+.|.-..+.+.+... +++.++
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 776532 23 233444455445666666644 445443
No 85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00023 Score=67.23 Aligned_cols=149 Identities=7% Similarity=-0.012 Sum_probs=110.3
Q ss_pred hchHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcCh--HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-
Q 009471 153 HGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDE--KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS- 228 (534)
Q Consensus 153 ~~~i~~Ll~~L-~~~~~~~~~~A~~~L~~l~~~~~--~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~- 228 (534)
...+..+...+ +..+...+..|+.++..++.+-. ....... .-.++.++..+++..+.+++.+..++..++..-+
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~ 137 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP 137 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc
Confidence 34577777888 67889999999999999985322 2110111 1368899999999889999999999988887431
Q ss_pred -----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh--HH--HHHhCCChHHHHHHHccCChHHHHHHH
Q 009471 229 -----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM--AR--AIVGHGGVRPLIEICQTGDSVSQAAAA 299 (534)
Q Consensus 229 -----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~--~l~~~g~i~~Lv~ll~~~~~~~~~~a~ 299 (534)
+-.. +++.|+..|++.++.+++.++.+|..+...... .. .......++.|..++.+.++.+|..|.
T Consensus 138 ~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 138 LASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp TCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred cccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1222 478888899999999999999999998754321 11 111246679999999999999999999
Q ss_pred HHHHHccC
Q 009471 300 CTLKNISA 307 (534)
Q Consensus 300 ~aL~nLa~ 307 (534)
.++..++.
T Consensus 213 ~~l~~i~~ 220 (249)
T 2qk1_A 213 ESFAILIK 220 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.59 E-value=0.009 Score=66.58 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=186.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh---HH-HHHh
Q 009471 201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM---AR-AIVG 276 (534)
Q Consensus 201 Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~---~~-~l~~ 276 (534)
+++-+...+..-+..++..+..+......- ..+..+++..+.+.+.+.... +.|+.++..|+..... .+ .++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 333344433333455556666665433110 111125677777777765333 8999999999854322 22 232
Q ss_pred CCChHHHHHHHccCChHHHHHHHHHHHHccC--CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (534)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (534)
+.++.++..+.+....++..|-.++..+.. +++.. ..++|.++..+.+......+..|+.++..++...+..
T Consensus 95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 568888888888889999877776666554 23322 3458889998876643478999999999999644321
Q ss_pred HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 009471 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS- 430 (534)
Q Consensus 355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~- 430 (534)
-...=...+|.+...+.+ +++...|..++..+|. -.+.+ -..++|.|++.+.+++. |. .++..|+..
T Consensus 169 -~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~-~~----~~~~~l~~~t 239 (986)
T 2iw3_A 169 -VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE-VP----ETVHLLGATT 239 (986)
T ss_dssp -HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH-HH----HHHHHHTTCC
T ss_pred -HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh-hH----HHHHHhhcCe
Confidence 122224567888887766 7899999999999997 23321 14589999999988754 22 234555432
Q ss_pred ---hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHH
Q 009471 431 ---AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYA 504 (534)
Q Consensus 431 ---~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a 504 (534)
.-....+ +=.+|.|.+-|......++..++.++-||+....+ ...|+- ..+|-|-...+.-..+++|..+
T Consensus 240 fv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 240 FVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp CCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHHHHHHH
T ss_pred eEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHHHHHHH
Confidence 1112222 12388888889888888999999999999855444 344543 6677777777665556788888
Q ss_pred HHHHHhh
Q 009471 505 VACLASL 511 (534)
Q Consensus 505 ~~~L~~L 511 (534)
..++-.|
T Consensus 316 ~~a~~~l 322 (986)
T 2iw3_A 316 LRALKTL 322 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777666
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.38 E-value=0.011 Score=67.06 Aligned_cols=330 Identities=9% Similarity=0.066 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-----CCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHH-
Q 009471 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-----ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI- 243 (534)
Q Consensus 170 ~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-----~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv- 243 (534)
.+..++..|..+....++....... ..++..++.+. ..+..++..++..+..++..+..+..+.....++.++
T Consensus 262 vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~ 340 (960)
T 1wa5_C 262 VKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence 4677888888887655543332222 44566666664 2357899999999999887654333321112333333
Q ss_pred ----HHHc----c-----CC--------------HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc------cC
Q 009471 244 ----RLVE----S-----GS--------------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------TG 290 (534)
Q Consensus 244 ----~lL~----~-----~~--------------~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~------~~ 290 (534)
..+. + .+ ...+..|..+|..++.... ..+. ...++.+...+. +.
T Consensus 341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~~~ 417 (960)
T 1wa5_C 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDPSK 417 (960)
T ss_dssp HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC----
T ss_pred HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCcch
Confidence 3331 1 01 1356677777777765433 1111 001233334444 56
Q ss_pred ChHHHHHHHHHHHHccCCchHHHHHHhh-----CcHH----HHHHHhhcC--CChhHHHHHHHHHHHHccCChHHHHHHH
Q 009471 291 DSVSQAAAACTLKNISAVPEVRQMLAEE-----GIVS----VMIKLLDCG--ILLGSKEYAAECLQNLTASNENLRRSVV 359 (534)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e~-----g~i~----~L~~ll~~~--~~~~v~~~a~~~L~~La~~~~~~~~~i~ 359 (534)
++..+..|+.++..++.+...+..-... ...+ .++..+.+. ....+|..++++++.++..-. .. .
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~-~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KA-Q 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HH-H
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HH-H
Confidence 7889999999999997531101000000 1222 233444555 133789999999999987421 11 1
Q ss_pred hcCChHHHHHhhcC--CchHHHHHHHHHHhhcC-c---------cHHHHHh--cCcHHHHHHHHhcCC---HH--HHHHH
Q 009471 360 SEGGIRSLLAYLDG--PLPQESAVGALRNLVGS-V---------SQEVLIS--LGFFPRLVHVLKAGS---LG--AQQAA 420 (534)
Q Consensus 360 ~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~-~---------~~~~l~~--~~~i~~Lv~lL~~~~---~~--v~~~A 420 (534)
-...++.+++.|.+ +.++..|+.+|.+++.. . ....+.. ..++..|+.+++... +. ....+
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 23346777777766 44799999999999872 1 1222211 234666666776641 11 23455
Q ss_pred HHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-----CCChHHHHHHHHHHHHhcCC--CcchHHHHhhCCCHHHHHhh
Q 009471 421 ASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQL 491 (534)
Q Consensus 421 ~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-----~~~~~v~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~l 491 (534)
..+|..++.. ++...++ ...++.|+..+. ..++..+....++|..++.. +.....+.. ..++.+...
T Consensus 574 ~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~i 649 (960)
T 1wa5_C 574 MRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHH
Confidence 5666555421 2222221 113444544443 23566777889999988854 233344433 566777777
Q ss_pred cCCCCchhHHHHHHHHHHhhc
Q 009471 492 LDPSPQNTAKKYAVACLASLS 512 (534)
Q Consensus 492 L~~~~~~~~k~~a~~~L~~L~ 512 (534)
|+.+. .+...++..++..+.
T Consensus 650 L~~~~-~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDI-QEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTC-TTTHHHHHHHHHHHH
T ss_pred HHhhh-HhhHHHHHHHHHHHH
Confidence 77652 245566665555554
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.34 E-value=0.027 Score=63.78 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc------CCCHHHHHHHHHHHHHhhcCCchhHHHHhc-----CCH
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT------ATSPRIREKTVTVICSLAESGSCENWLVSE-----GVL 239 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~------~~~~~v~~~A~~~L~~La~~~~~~~~l~~~-----g~i 239 (534)
|..|...|..++...++. +.. -.++.+.+.+. +++...++.|+.+++.++........-... ...
T Consensus 378 R~aa~~~L~~l~~~~~~~---v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 378 RRACTDFLKELKEKNEVL---VTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred HHHHHHHHHHHHHHcchh---HHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 445555566666544321 111 12334444454 456889999999999998642111000000 122
Q ss_pred H----HHHHHHccC---CHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471 240 P----PLIRLVESG---STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (534)
Q Consensus 240 ~----~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (534)
+ .++..+.+. ++.+|..|++++..++.. ++... ..++.++..+.++++.++.+|+.+|.+++...
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 2 233445666 889999999999999864 22222 23478888888888999999999999988731
Q ss_pred -------h-HHHHHHh--hCcHHHHHHHhhcCC--Ch--hHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhh---
Q 009471 310 -------E-VRQMLAE--EGIVSVMIKLLDCGI--LL--GSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYL--- 371 (534)
Q Consensus 310 -------~-~~~~i~e--~g~i~~L~~ll~~~~--~~--~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L--- 371 (534)
+ .+..+.. ..+++.|+.++.... +. ...+.+..+|..++... +..... -...++.|...+
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~--~~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL--FPQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG--HHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHH
Confidence 1 1222322 446677777776641 00 12345666666654311 111100 011233344433
Q ss_pred -cCC---chHHHHHHHHHHhhcC--ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009471 372 -DGP---LPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426 (534)
Q Consensus 372 -~~~---~~~~~a~~aL~~La~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (534)
+++ ..+..++.+|+.++.. .....-.+..+++.+...|+....+....+..++..
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 332 3445577777777763 112223345567777777766544444444444433
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.29 E-value=0.0053 Score=57.83 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=123.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc----CCCHHHHHHHHHHHHHhhc----CCc
Q 009471 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT----ATSPRIREKTVTVICSLAE----SGS 228 (534)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~v~~~A~~~L~~La~----~~~ 228 (534)
+++...|.+.|...+.+|++.|.+.+..+++.... .++.+++.+. +++..+...++.+|..+.. .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667778889999999999999988766643322 2344444433 6788888888888887642 221
Q ss_pred -hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
..+.- ..-.+|.|+.-+.+....+++.+-.++..+..-.+.... .+.++.-+++.++..+..++..+.++-.
T Consensus 124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v------~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKM------TPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH------HHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 11110 123589999999999999999988888777643222222 2677788889999999999988888765
Q ss_pred CchHHHHHHhhCcH---HHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 308 VPEVRQMLAEEGIV---SVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 308 ~~~~~~~i~e~g~i---~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
..+.. -..++ +.+.+++.+.+. .+|..|+.++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~-~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDV-NVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSH-HHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCH-HHHHHHHHHHHHHHH
Confidence 32221 24467 999999998887 899999999887654
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.12 E-value=0.0012 Score=67.48 Aligned_cols=235 Identities=12% Similarity=0.117 Sum_probs=153.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc---hhHHHHhcCCHHHHHHHHc------------c-CCHHHHHHHHHHH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVE------------S-GSTVGKEKATISL 261 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~------------~-~~~~~~~~A~~~L 261 (534)
.+.|+.-|=++..++|.-|+.+|+.+..... .+. ...+- ...++++. + .-..+|+.++++|
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--IRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--CCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--ccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 4556655667889999999999999865432 111 11111 34444431 1 2446999999999
Q ss_pred HHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHH
Q 009471 262 QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAA 341 (534)
Q Consensus 262 ~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~ 341 (534)
..+ .+-+.. ..++..|+..+..+.|+++..++-.|..+. +.... -.++++.++.-|.+.++ +|+..|+
T Consensus 253 GaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DD-DVRAVAA 320 (800)
T 3oc3_A 253 SRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDE-DIKLLSA 320 (800)
T ss_dssp HHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSH-HHHHHHH
T ss_pred HHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCccc-HHHHHHH
Confidence 999 552222 344555666667889999999999999981 11111 25668888888888876 8999999
Q ss_pred HHHHHHccCChHHHHHHHhcCChHHHHHhhc---C-CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHH
Q 009471 342 ECLQNLTASNENLRRSVVSEGGIRSLLAYLD---G-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGA 416 (534)
Q Consensus 342 ~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~---~-~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v 416 (534)
.+|.-++. .+.. .. .+..+...|. + .......+..|..|+. +.. .......+|+|..++++.-+.|
T Consensus 321 etLiPIA~-p~~l-~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFPI-TDSL-DL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSCC-SSTH-HH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhcc-hhhH-HH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHH
Confidence 99999992 2111 11 1333444443 2 3346677778888887 321 1112478999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCchHHH-HHhhcCCChHHHHHHHHHHH
Q 009471 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLL-IKLLEAKPNSVREVAAQAIS 466 (534)
Q Consensus 417 ~~~A~~aL~~la~~~~~~~~i~~~g~v~~L-v~ll~~~~~~v~~~A~~aL~ 466 (534)
|..++.++..+. ..+ +++.+ .+++-..+++++..+..+-.
T Consensus 392 R~AVL~TL~tfL-~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS-EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC-CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999998887 222 22222 23344677888888777653
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0065 Score=58.11 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=122.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcChHhHH--HHh-cC-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hh
Q 009471 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVL--AVM-GR-SNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE 230 (534)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~--~i~-~~-g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~ 230 (534)
+-.+|.+.+...|.+|+..|..++...+.... ... .- ...+.+-..+.+.+..++..++.++..++.... .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55788999999999999999998865442211 111 11 335666678889999999999999999876431 11
Q ss_pred --HHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 231 --NWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 231 --~~l~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
....-..+++.|+. .+.+....++..+..++..+.........+ ++.++..+.+.+|.++..++..|.++..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 12222345677765 477788888988888887776433222222 2566677888999999988888877653
Q ss_pred C--c---hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 308 V--P---EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 308 ~--~---~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
. . ..+..+ ..+++.+..++.+.+. .||..|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~-~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFL--PELLKHVPQLAGHGDR-NVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHH--HHHGGGHHHHHTCSSH-HHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHH--HHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence 1 1 111111 2345566777788776 899999999988865
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.78 E-value=0.066 Score=60.65 Aligned_cols=210 Identities=14% Similarity=0.062 Sum_probs=120.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH---c--cCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChH
Q 009471 208 TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---E--SGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVR 281 (534)
Q Consensus 208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~--~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~ 281 (534)
.+...++.++.+++.+++...... ...++.++.++ . +.++.++..+++++..++..-. +...+ ...++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 467889999999999987543111 12344444433 2 3478899999999999875311 11111 12246
Q ss_pred HHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCC-ChhHHHHHHHHHHHHccCCh-HHHHH
Q 009471 282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS 357 (534)
Q Consensus 282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~ 357 (534)
.|+..+ + +.++..|+.++.+++. +.+..+.. ..++..+.+++..+. +...+..+..+++.++...+ .....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 3 7789999999999995 23333332 456677777777643 23678889999999876321 22212
Q ss_pred HHhcCChHHHHHh----hcCC----chHHHHHHHHHHhhc-----Ccc----------HH--HHHhcCcHHHHHHHHhc-
Q 009471 358 VVSEGGIRSLLAY----LDGP----LPQESAVGALRNLVG-----SVS----------QE--VLISLGFFPRLVHVLKA- 411 (534)
Q Consensus 358 i~~~g~l~~L~~~----L~~~----~~~~~a~~aL~~La~-----~~~----------~~--~l~~~~~i~~Lv~lL~~- 411 (534)
.+. ..++.+++. ++++ +.+......+..|+. ... .. .-....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence 211 223334433 2322 123333444444432 110 00 11224567777777754
Q ss_pred -CCHHHHHHHHHHHHHhcC
Q 009471 412 -GSLGAQQAAASALCRVCT 429 (534)
Q Consensus 412 -~~~~v~~~A~~aL~~la~ 429 (534)
.+..+.+.+++++.+++.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 367999999999999874
No 93
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.71 E-value=0.039 Score=50.85 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=108.0
Q ss_pred HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccC
Q 009471 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG 249 (534)
Q Consensus 177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~ 249 (534)
+|.+-...+++.+..+++....-.|-.+|+..+ ..+|-.++.+++.+...++ ....+.+.+++|..++.++.+
T Consensus 78 aLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 78 ALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 344444457788889999888777888887654 5789999999999987654 667777899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcChhhHHHHHh--------CCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471 250 STVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (534)
Q Consensus 250 ~~~~~~~A~~~L~~Ls~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (534)
+.-.+..|.-++.++-.++..-..+++ ...+..++ .+..++++...++..++-..|+.++..+..+..
T Consensus 158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999998877766544443 11122222 233567888889999999999999988887764
No 94
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.68 E-value=0.5 Score=53.37 Aligned_cols=301 Identities=10% Similarity=0.043 Sum_probs=160.9
Q ss_pred CcHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcC---------Cc-hhHHHHh--cCCHHHHHHHHccC--------C
Q 009471 196 SNIAALVQLLTA-----TSPRIREKTVTVICSLAES---------GS-CENWLVS--EGVLPPLIRLVESG--------S 250 (534)
Q Consensus 196 g~v~~Lv~lL~~-----~~~~v~~~A~~~L~~La~~---------~~-~~~~l~~--~g~i~~Lv~lL~~~--------~ 250 (534)
..++.++.+..+ .++++...++..+..++.. .. .+..+.. ..+++.++..+.-+ +
T Consensus 348 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d 427 (971)
T 2x1g_F 348 RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS 427 (971)
T ss_dssp HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC
T ss_pred HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC
Confidence 345566665544 3678888998888777651 11 1111110 13444444444211 1
Q ss_pred H-------HHHHHHHHHHHHhhcChh--hHHHHHhCCChHHHHHHHcc-----CChHHHHHHHHHHHHccCCchHHHHHH
Q 009471 251 T-------VGKEKATISLQRLSMSAE--MARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVPEVRQMLA 316 (534)
Q Consensus 251 ~-------~~~~~A~~~L~~Ls~~~~--~~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (534)
+ ..|..+..+|..++.... .-..+. +.+-..+.. .++..+..++.++..++.......
T Consensus 428 ~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~-----~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~--- 499 (971)
T 2x1g_F 428 SDDLECFRCYRQDISDTFMYCYDVLNDYILEILA-----AMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE--- 499 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH-----HHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh---
Confidence 1 244556666766654322 111111 223333333 678899999999999987542111
Q ss_pred hhCcHHHHHHHh---h--cCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCc
Q 009471 317 EEGIVSVMIKLL---D--CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSV 391 (534)
Q Consensus 317 e~g~i~~L~~ll---~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~ 391 (534)
...++.+++++ . +.++ .++..++++++.++..-....+ .-...++.++..++ +.++..|+.++.+|+..
T Consensus 500 -~~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~- 573 (971)
T 2x1g_F 500 -KRQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPA--YIPPAINLLVRGLN-SSMSAQATLGLKELCRD- 573 (971)
T ss_dssp --CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHH-
T ss_pred -hHHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH-
Confidence 12334444433 2 2243 7899999999998852111110 11123555666664 88999999999999962
Q ss_pred cHHHHHh--cCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCC---hhHHHHHHhcCchHHHHHh----hcCC--ChHHH
Q 009471 392 SQEVLIS--LGFFPRLVHVLKAG--SLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKL----LEAK--PNSVR 458 (534)
Q Consensus 392 ~~~~l~~--~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~---~~~~~~i~~~g~v~~Lv~l----l~~~--~~~v~ 458 (534)
+...+.. ..++..+..++..+ +...+..+..++..++.. .+...++ ...++++++. ++.. +++.+
T Consensus 574 ~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~ 651 (971)
T 2x1g_F 574 CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL--DIIVSPCFEELQAICQADSKTPAAR 651 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHH
T ss_pred HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhH
Confidence 2233322 34566777777763 578888888888888743 2333333 2234444443 3332 33333
Q ss_pred HHHHHHHHHhc---CC--C------------cchHHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471 459 EVAAQAISSLV---TL--P------------QNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 459 ~~A~~aL~~L~---~~--~------------~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L~~~ 514 (534)
.....++..|+ .. . .....+.. ..++.+.++++.. .+..+...+..++.+++..
T Consensus 652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 33333333332 21 0 11122332 5677777777543 2346888888888887654
No 95
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.64 E-value=0.079 Score=51.00 Aligned_cols=212 Identities=13% Similarity=0.112 Sum_probs=154.4
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH----HHHH-hcCChHHHHHhhcCCchHHHHHHHHHHh
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR----RSVV-SEGGIRSLLAYLDGPLPQESAVGALRNL 387 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~----~~i~-~~g~l~~L~~~L~~~~~~~~a~~aL~~L 387 (534)
..+...+.+..|+..+..=+. +.+..+..+..++-......+ ..+. +...+..|+..-+++++--.+-..|+.+
T Consensus 72 ~ei~~~dll~~Li~~l~~L~f-E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDF-EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCH-HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCc-hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 455667888888888877776 789999998888887443221 2222 2334555555556688888999999999
Q ss_pred hc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcC---chHHHHHhhcCCChHHHHHHH
Q 009471 388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREVAA 462 (534)
Q Consensus 388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g---~v~~Lv~ll~~~~~~v~~~A~ 462 (534)
.. +.....++..+.+..+++.++.++-++..-|..++..+- ++......+.... +....-+++.+++--++..+.
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 98 455566777788889999999999999999999888865 5544444444433 677888899999999999999
Q ss_pred HHHHHhcCCCcchHH---HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhcc
Q 009471 463 QAISSLVTLPQNCRE---VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERGR 526 (534)
Q Consensus 463 ~aL~~L~~~~~~~~~---~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~ 526 (534)
..|..|..+..|... ++.+...+..++.+|.+. ...++..|..++--...+ ++.+.+.|.+||
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr 299 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ 299 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHH
Confidence 999999999888754 455566777788888876 446777777665444433 566666665443
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.60 E-value=0.39 Score=54.10 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=124.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH---ccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChH
Q 009471 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---ESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVR 281 (534)
Q Consensus 206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~ 281 (534)
.+.+...++.++.+++.+++.-... ....++.++..+ .++++.++..+++++..++..- ++.. +. ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHH
Confidence 4567889999999999998764310 012234444443 2357789999999999987531 1222 21 56778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCC-ChhHHHHHHHHHHHHccCCh-HHHHH
Q 009471 282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS 357 (534)
Q Consensus 282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~ 357 (534)
.++..+.+ +.++..|+.++.+++.. .+..+.. ..++..+..++..++ ....+.....+++.++...+ .....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888854 88999999999999852 2222221 344555666666533 33678889999999886432 32222
Q ss_pred HHhcCChHHHHHhhc----C---CchHH---HHHHHHHHhhc--C--cc-------------------HHHHHhcCcHHH
Q 009471 358 VVSEGGIRSLLAYLD----G---PLPQE---SAVGALRNLVG--S--VS-------------------QEVLISLGFFPR 404 (534)
Q Consensus 358 i~~~g~l~~L~~~L~----~---~~~~~---~a~~aL~~La~--~--~~-------------------~~~l~~~~~i~~ 404 (534)
.+ ...++.+.+.+. + ++.+. ..+.+|..+.. . .. .-.-....+++.
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 22 223444444332 2 22222 33444444443 1 00 011122334555
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHHhc
Q 009471 405 LVHVLK--AGSLGAQQAAASALCRVC 428 (534)
Q Consensus 405 Lv~lL~--~~~~~v~~~A~~aL~~la 428 (534)
+..++. ..++.+.+.++.++..++
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHH
Confidence 666664 346789999999998876
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.49 E-value=0.012 Score=60.12 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=156.4
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh--cCCcHHHHHHHh--cC-----CC---HHHHHHHHHH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLL--TA-----TS---PRIREKTVTV 219 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~lL--~~-----~~---~~v~~~A~~~ 219 (534)
.......|+..|-+...+.|.-|+-+|+++++.......... ..+..-.|+-++ +. +| ..|||.++.+
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQt 251 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYL 251 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHH
Confidence 333778888888999999999999999999875432111111 112222222222 11 12 6799999999
Q ss_pred HHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 009471 220 ICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299 (534)
Q Consensus 220 L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~ 299 (534)
|+.+ ..-+.. ..++..++..+.....+++..+.-.|..+. +.... -.+.++.++.-|++.|.+++..|+
T Consensus 252 LGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 252 LSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHH
Confidence 9999 543322 345666666667788999999999999882 11111 134457788888999999999999
Q ss_pred HHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCCh-hHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--Cch
Q 009471 300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL-GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLP 376 (534)
Q Consensus 300 ~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~-~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~ 376 (534)
.+|.-++ .++... .++..+-+.|.+.++. .........|..++..... .......+|.|..++.+ +++
T Consensus 321 etLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 9999998 322212 2244444555433321 3355666777777764321 11123678889999987 678
Q ss_pred HHHHHHHHHHhhcCccHHHHHhcCcHHHHHH-HHhcCCHHHHHHHHHHHH
Q 009471 377 QESAVGALRNLVGSVSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALC 425 (534)
Q Consensus 377 ~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~ 425 (534)
|..++.++..+.. ..++..+.+ +|-..+++++..+..+..
T Consensus 392 R~AVL~TL~tfL~---------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLSE---------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999988761 123333333 456778888888877664
No 98
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.33 E-value=0.17 Score=48.77 Aligned_cols=236 Identities=14% Similarity=0.186 Sum_probs=156.9
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h----HHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E----VRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQN 346 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~----~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~ 346 (534)
.+...+.+..|+..+..=+.+.|..+..+..++.... + ....+.. ..++..|+.--+ ++ ++-..+-..|+.
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~-diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SP-EIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--ST-TTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cc-hhHhHHHHHHHH
Confidence 4555677888888888889999999999888887643 2 2222322 223333333222 22 566777778888
Q ss_pred HccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHh---cCcHHHHHHHHhcCCHHHHHH
Q 009471 347 LTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLIS---LGFFPRLVHVLKAGSLGAQQA 419 (534)
Q Consensus 347 La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~---~~~i~~Lv~lL~~~~~~v~~~ 419 (534)
+.. .+.....+.....+-.+.++++.+ ++...|..++..+-. . .....+++ ..++...-.+|.+++.-++++
T Consensus 150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 776 667777788888888899988764 456667777776654 1 22223333 245778888999999999999
Q ss_pred HHHHHHHhcCChhH----HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHH---Hh--hCCCHHHHHh
Q 009471 420 AASALCRVCTSAEM----KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV---KR--DDKSVPNLVQ 490 (534)
Q Consensus 420 A~~aL~~la~~~~~----~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~---~~--~~~~v~~Lv~ 490 (534)
++..|+.+-.+..+ .+++.+..-++.++.++.+++..+|..|-.+.-.++.++.....+ .. .++.+..|-.
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~ 308 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK 308 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999866433 344444557899999999999999999999998888665443322 22 1123333333
Q ss_pred hcCCC-Cc---hhHHHHHHHHHHhhc
Q 009471 491 LLDPS-PQ---NTAKKYAVACLASLS 512 (534)
Q Consensus 491 lL~~~-~~---~~~k~~a~~~L~~L~ 512 (534)
..... ++ .+.|.+-+.-+.+|-
T Consensus 309 f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 309 FQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp TTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 33332 22 246777777777764
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.13 E-value=0.099 Score=59.08 Aligned_cols=296 Identities=12% Similarity=-0.008 Sum_probs=156.9
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc---hhHHHHhcCCHHH
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPP 241 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~ 241 (534)
..+++.+..++.++...+..-+- ..++..+.++.+.++|.. ++++..|+.+|..+..... .+..++..=.+..
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 36788889999999999875442 345566778888888865 7999999999999987653 3333333211112
Q ss_pred HHHHHc--cCCHHHHHHHHHHHHHhhc-------Ch-----hhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471 242 LIRLVE--SGSTVGKEKATISLQRLSM-------SA-----EMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (534)
Q Consensus 242 Lv~lL~--~~~~~~~~~A~~~L~~Ls~-------~~-----~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (534)
.+..+. ..+.+..+..++.+..++. .+ +.+..... .+.++.++.++.+++.++-..++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 222222 3566665555544433321 11 11111111 45778888888888887766555555443
Q ss_pred cCCch-------HHHHHHh--hCcHHHHHHHhhcCC-----C----h------hHHHHHHHHHHHHccCChHHHHH-HHh
Q 009471 306 SAVPE-------VRQMLAE--EGIVSVMIKLLDCGI-----L----L------GSKEYAAECLQNLTASNENLRRS-VVS 360 (534)
Q Consensus 306 a~~~~-------~~~~i~e--~g~i~~L~~ll~~~~-----~----~------~v~~~a~~~L~~La~~~~~~~~~-i~~ 360 (534)
..... ....... ...++.++.-+..++ + . +.|......+..++.-++..--. +.+
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~ 439 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS 439 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 32100 0111111 223444444443211 0 0 22333332222222212221111 000
Q ss_pred cCChHHHHHhhcC-----CchHHHHHHHHHHhhc--CccHHHH-----HhcCcHHHHHHHHh-----cCCHHHHHHHHHH
Q 009471 361 EGGIRSLLAYLDG-----PLPQESAVGALRNLVG--SVSQEVL-----ISLGFFPRLVHVLK-----AGSLGAQQAAASA 423 (534)
Q Consensus 361 ~g~l~~L~~~L~~-----~~~~~~a~~aL~~La~--~~~~~~l-----~~~~~i~~Lv~lL~-----~~~~~v~~~A~~a 423 (534)
-..+.+-+.+.+ -...|.++.+|+.++. ......+ .-..+++.+..+++ ..++.|+..++++
T Consensus 440 -~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~ 518 (980)
T 3ibv_A 440 -AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEI 518 (980)
T ss_dssp -HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHH
T ss_pred -HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 011112222321 2357899999999987 2111100 01123555555655 5678999999999
Q ss_pred HHHhcCC-hhHHHHHHhcCchHHHHHhh------cCCChHHHHHHHHHHHHhcCC
Q 009471 424 LCRVCTS-AEMKKLVGEAGCTPLLIKLL------EAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 424 L~~la~~-~~~~~~i~~~g~v~~Lv~ll------~~~~~~v~~~A~~aL~~L~~~ 471 (534)
+.+.+.. ..+ ...++.++..+ .++++.++.+|+.++.+++..
T Consensus 519 l~rys~~~~~~------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 519 LVRYASFFDYE------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHTGGGGGTC------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 9998864 221 23344444443 356778999999999999843
No 100
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.12 E-value=0.6 Score=53.22 Aligned_cols=295 Identities=13% Similarity=0.078 Sum_probs=153.4
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC--ch----hHHHHh--
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG--SC----ENWLVS-- 235 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~--~~----~~~l~~-- 235 (534)
.++.+.+..++.++...+..-+- ..+.+...++.+. .++ ++++++..|+.+|..+.... +. ...+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 34577888899988887764432 2244556677776 344 37899999999999998752 21 111110
Q ss_pred cCCHHHHHH-H----------H---ccCCHHHHHHHHHHHHHhhcC--------hhhHHHHHhCCChHHHHHHHccCChH
Q 009471 236 EGVLPPLIR-L----------V---ESGSTVGKEKATISLQRLSMS--------AEMARAIVGHGGVRPLIEICQTGDSV 293 (534)
Q Consensus 236 ~g~i~~Lv~-l----------L---~~~~~~~~~~A~~~L~~Ls~~--------~~~~~~l~~~g~i~~Lv~ll~~~~~~ 293 (534)
.+++..+.. + . .+.+.+.....+..+..+... ++....+ ...++.++.+...++.+
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~ 359 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERE 359 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHH
Confidence 112222211 0 1 112333334444444433221 1111111 12356666666677778
Q ss_pred HHHHHHHHHHHccC----CchHHHHHHh--hCcHHHHHHHhhcCCC------------------h---hHHHHHHHHHHH
Q 009471 294 SQAAAACTLKNISA----VPEVRQMLAE--EGIVSVMIKLLDCGIL------------------L---GSKEYAAECLQN 346 (534)
Q Consensus 294 ~~~~a~~aL~nLa~----~~~~~~~i~e--~g~i~~L~~ll~~~~~------------------~---~v~~~a~~~L~~ 346 (534)
+...++..+..++. .+..+..+.. ...++.++..+..+++ . ..+..+..+|..
T Consensus 360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~ 439 (1049)
T 3m1i_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHH
Confidence 87777776666654 2211111111 2234445544421110 0 113345666666
Q ss_pred HccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHH--HHHhcCcHHHHHHHHhc-----CCHH
Q 009471 347 LTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQE--VLISLGFFPRLVHVLKA-----GSLG 415 (534)
Q Consensus 347 La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~--~l~~~~~i~~Lv~lL~~-----~~~~ 415 (534)
++...+.. ++ .-..+.+-+.+.+ ...++.++.+++.++...... .-.-..+++.+..+... +.+.
T Consensus 440 l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 440 LTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 66322211 10 0112233333432 236889999999998621111 11112233444443321 2345
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 416 AQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 416 v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
++..++++++.++.. ..+.+.+ ...++.+++.+.+.++.++.+|+.++.+++..
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 555688999988743 2222333 23577788888888899999999999999853
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.03 E-value=0.0022 Score=60.00 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=107.8
Q ss_pred hHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009471 186 EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265 (534)
Q Consensus 186 ~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 265 (534)
+..+......=....+..+++++++.||..++..|. .+.|..++++.+..++..++..+ .
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll~D~d~~VR~~aA~~l---~ 123 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADRL---P 123 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCC-----------------HHHHHHHHcCCCHHHHHHHHHhC---C
Confidence 333333333323455666777778888888775421 13466777888888888777632 1
Q ss_pred cChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471 266 MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (534)
Q Consensus 266 ~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~ 345 (534)
.+.|..+++++++.+|..++.. +. .+.+..++++++. .|+..++..
T Consensus 124 --------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~-~VR~~aa~~-- 169 (244)
T 1lrv_A 124 --------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDR-QVRKLVAKR-- 169 (244)
T ss_dssp --------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCH-HHHHHHHHH--
T ss_pred --------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCH-HHHHHHHHc--
Confidence 1345566777888888777762 21 1123344455554 677776663
Q ss_pred HHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 009471 346 NLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA 423 (534)
Q Consensus 346 ~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~a 423 (534)
+ ..+.+..++++ +.++..++.. + ..+.|..++.+.+..|+..++..
T Consensus 170 -l---------------~~~ll~~ll~D~d~~VR~aaa~~---l-------------~~~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 170 -L---------------PEESLGLMTQDPEPEVRRIVASR---L-------------RGDDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp -S---------------CGGGGGGSTTCSSHHHHHHHHHH---C-------------CGGGGGGGGGCSSHHHHHHHHHH
T ss_pred -C---------------CHHHHHHHHcCCCHHHHHHHHHh---C-------------CHHHHHHHHcCCCHHHHHHHHHc
Confidence 1 12334455555 3466666653 2 12557777888888999888876
Q ss_pred HHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471 424 LCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (534)
Q Consensus 424 L~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~ 466 (534)
+. .+.|..+ ++++..||..+...|.
T Consensus 218 l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 218 AS-----------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SC-----------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CC-----------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 42 3566666 8889999998876653
No 102
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.87 E-value=0.5 Score=43.54 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHH-hcCChHHHHHhh-------cCCch-------HHHHHHHHHHhhc-CccHHHHHh
Q 009471 335 GSKEYAAECLQNLTASNENLRRSVV-SEGGIRSLLAYL-------DGPLP-------QESAVGALRNLVG-SVSQEVLIS 398 (534)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L-------~~~~~-------~~~a~~aL~~La~-~~~~~~l~~ 398 (534)
+.|+.|+.-|..=-...++.-..+. ..|.+..|++=+ ..|.. ..+|+..|..++. ++.+..++.
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~ 95 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA 95 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence 4577777666664444455544444 346566665522 22221 3678888899998 888999999
Q ss_pred cCcHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
.++.-.|..+|+..+ ..++-.+.++++.+.+. ++....+.+.+.+|...+.++.+++--+..|..++..+..+
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence 999888888886554 47888999999999954 78888889999999999999999999999999999988876
Q ss_pred CcchHH-------HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 472 PQNCRE-------VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 472 ~~~~~~-------~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
..+... |..=...+..++.-+..+++...-++.+.|-..|+.+
T Consensus 176 d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 176 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 544433 3222234555565555555667889999999999988
No 103
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.81 E-value=0.84 Score=52.79 Aligned_cols=298 Identities=12% Similarity=0.042 Sum_probs=167.4
Q ss_pred chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh--cCCCHHHHHHHHHHHHHhhcCC--
Q 009471 154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL--TATSPRIREKTVTVICSLAESG-- 227 (534)
Q Consensus 154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~v~~~A~~~L~~La~~~-- 227 (534)
..+..++..+.++ +.+.|.+|-..|.++-... ++...+...| .+.++.+|..|+..|.+.....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3355555555554 6667888888887764322 2333333333 3456899999999999886432
Q ss_pred ---c-hhHHHHhcCCHHHHHHHHcc---CCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 009471 228 ---S-CENWLVSEGVLPPLIRLVES---GSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299 (534)
Q Consensus 228 ---~-~~~~l~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~ 299 (534)
+ .+..+ +..++..+...-.. .+..++...+.++..++..+ +..| .+.++.|+.++.. ++..+..++
T Consensus 81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L 154 (1204)
T 3a6p_A 81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVM 154 (1204)
T ss_dssp GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHH
Confidence 2 33333 33334433322111 35778888999998887653 2223 4556888888865 556677788
Q ss_pred HHHHHccCC-------chHH-----HHHHh--hCcHHHHHHHhhcC------------------CChhHHHHHHHHHHHH
Q 009471 300 CTLKNISAV-------PEVR-----QMLAE--EGIVSVMIKLLDCG------------------ILLGSKEYAAECLQNL 347 (534)
Q Consensus 300 ~aL~nLa~~-------~~~~-----~~i~e--~g~i~~L~~ll~~~------------------~~~~v~~~a~~~L~~L 347 (534)
.+|..++.. ...+ ..+.+ ..+++.+..++.+. ....+...++.++.+.
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 888777542 1111 12222 12334444444321 0113556667777665
Q ss_pred ccCChHHHHHHHhcC--ChHHHHHhhcCCchHHHHHHHHHHhhc-CccHHH---HHh---cCcHHHHHHHHh--------
Q 009471 348 TASNENLRRSVVSEG--GIRSLLAYLDGPLPQESAVGALRNLVG-SVSQEV---LIS---LGFFPRLVHVLK-------- 410 (534)
Q Consensus 348 a~~~~~~~~~i~~~g--~l~~L~~~L~~~~~~~~a~~aL~~La~-~~~~~~---l~~---~~~i~~Lv~lL~-------- 410 (534)
..--+. ..+++.. .++.++.++.+++++..|+.+|..+.. ....+. ++. ..++..++..+.
T Consensus 235 l~Wi~~--~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~ 312 (1204)
T 3a6p_A 235 IDWVSM--SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV 312 (1204)
T ss_dssp TTTSCH--HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred HhccCH--HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence 442221 1233332 677777778889999999999999997 222221 221 112334555542
Q ss_pred cCCHHHHHHHHHHHHHhcCChhHHHHHHh----------cCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 411 AGSLGAQQAAASALCRVCTSAEMKKLVGE----------AGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 411 ~~~~~v~~~A~~aL~~la~~~~~~~~i~~----------~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
..+.++.+.-+..+..++. .....+.. .++++.+..+...++..+...+...-..+...
T Consensus 313 e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 1124666677777776662 22222211 13577777777777888877777755546544
No 104
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.66 E-value=0.87 Score=51.24 Aligned_cols=330 Identities=12% Similarity=0.055 Sum_probs=172.9
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh---cCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHH
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL---TATSPRIREKTVTVICSLAESGS-CENWLVSEGVLP 240 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL---~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~ 240 (534)
..+...+..++.++..++..-... ....++.++..+ .++++.++..++++++.++..-. ... .-..+++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~ 532 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVLP 532 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence 345667777777888877543321 113344454443 33468899999999999986422 112 2246888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHHHHHHcc--CChHHHHHHHHHHHHccCC-c-hHHHH
Q 009471 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQT--GDSVSQAAAACTLKNISAV-P-EVRQM 314 (534)
Q Consensus 241 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~-~-~~~~~ 314 (534)
.++..|.+ +.++..|+.++.+++..- +..+.. ...+..|..++.. -+...+..++.++..++.. + +....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888865 789999999999998531 111110 1123444555554 2567788888888887752 2 33332
Q ss_pred HHhhCcHHHHHHHhh----cCCChhHHH---HHHHHHHHHccC----Ch-H--------------HHH--HHHhcCChHH
Q 009471 315 LAEEGIVSVMIKLLD----CGILLGSKE---YAAECLQNLTAS----NE-N--------------LRR--SVVSEGGIRS 366 (534)
Q Consensus 315 i~e~g~i~~L~~ll~----~~~~~~v~~---~a~~~L~~La~~----~~-~--------------~~~--~i~~~g~l~~ 366 (534)
.. ...++.+.+.+. ...+.+.+. ..+.+|..+... .+ . .+. .-+....++.
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 22 234444444442 222223333 344555444431 00 0 000 0112223444
Q ss_pred HHHhhc----CCchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHH----hc-CCHHHHHHHHHHHHHhcCChhHHH
Q 009471 367 LLAYLD----GPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL----KA-GSLGAQQAAASALCRVCTSAEMKK 435 (534)
Q Consensus 367 L~~~L~----~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL----~~-~~~~v~~~A~~aL~~la~~~~~~~ 435 (534)
+.++++ ++.+.+.++.++..++. .+.. ..+++.++..+ .. +.+.+-......+..+...+....
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHH
Confidence 444442 35678888888888765 2111 12345544433 22 344444444444444443322222
Q ss_pred HHHh--cCchHHHHHhhc---CCChHHHHHHHHHHHHhcCCCcchHHHHhhC----CCHHHHHhhcCCCCchhHHHHHHH
Q 009471 436 LVGE--AGCTPLLIKLLE---AKPNSVREVAAQAISSLVTLPQNCREVKRDD----KSVPNLVQLLDPSPQNTAKKYAVA 506 (534)
Q Consensus 436 ~i~~--~g~v~~Lv~ll~---~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~----~~v~~Lv~lL~~~~~~~~k~~a~~ 506 (534)
.+.+ ...+.....++. ..+++++......|..+....+.. +.... ..+..++..+... +..+.+.+..
T Consensus 763 ~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~l~ 839 (963)
T 2x19_B 763 PIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKFP-EAPTVKASCG 839 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 2211 122444444443 246899999988888887432211 11111 1234455566643 4467788888
Q ss_pred HHHhhchh
Q 009471 507 CLASLSPS 514 (534)
Q Consensus 507 ~L~~L~~~ 514 (534)
.+..+...
T Consensus 840 ~l~~l~~~ 847 (963)
T 2x19_B 840 FFTELLPR 847 (963)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHhc
Confidence 88877654
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.058 Score=51.36 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=116.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHccCCch---HHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh-----
Q 009471 283 LIEICQTGDSVSQAAAACTLKNISAVPE---VRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE----- 352 (534)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~---~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~----- 352 (534)
|-+-|.+.+|..|..++..|..+..... ....... ....+.+-..+.+.+. .++..++.++..++....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhhhhhcc
Confidence 5567889999999999999887654321 1111111 2344556667766665 789999999998875321
Q ss_pred HHHHHHHhcCChHHHHHh-hcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 353 NLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
.......-...++.|+.- +.+ +.++..+..++..++. ...... +++.+...+.+.+|.++..++..|.++.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 111111223446666653 555 4577888888887775 211111 3466677788999999999988888765
Q ss_pred CC-----hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 429 TS-----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 429 ~~-----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
.. ...+..+ ..+++.+..++.+.++.||..|..++..+-..
T Consensus 168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 32 1112222 22466778888999999999999999877644
No 106
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.42 E-value=1.1 Score=50.60 Aligned_cols=294 Identities=14% Similarity=0.085 Sum_probs=152.3
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC---c---hhHHHHhc-
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG---S---CENWLVSE- 236 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~---~---~~~~l~~~- 236 (534)
.++++....+++++......-+ ...+++.+.++.+. .+|. +++.+..|+.+|..+.... + ....+...
T Consensus 206 ~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf 281 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHH
Confidence 3456677788888888876533 23566778899999 8885 5789999999999998632 2 11111100
Q ss_pred -CCHHHH-----------HHHHc---cCCHHHHHHHHHHHHHhhcCh-------hhHHHHHhCCChHHHHHHHccCChHH
Q 009471 237 -GVLPPL-----------IRLVE---SGSTVGKEKATISLQRLSMSA-------EMARAIVGHGGVRPLIEICQTGDSVS 294 (534)
Q Consensus 237 -g~i~~L-----------v~lL~---~~~~~~~~~A~~~L~~Ls~~~-------~~~~~l~~~g~i~~Lv~ll~~~~~~~ 294 (534)
+.+..+ -..+. ..+.+....-+..+..+.... +....+. ..++..|+.+...++.++
T Consensus 282 ~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~~~l~~Ll~~~~~~d~ei 360 (1023)
T 4hat_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL-LNAHQYLIQLSKIEEREL 360 (1023)
T ss_dssp HHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH-HHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH-HHHHHHHHHhhCCCcHHH
Confidence 111111 11111 123444445555554443211 1101111 112335555555667777
Q ss_pred HHHHHHHHHHccCC----chHHHHHHh--hCcHHHHHHHhhcCC------------------C-hh-HHH-HHHHHHHHH
Q 009471 295 QAAAACTLKNISAV----PEVRQMLAE--EGIVSVMIKLLDCGI------------------L-LG-SKE-YAAECLQNL 347 (534)
Q Consensus 295 ~~~a~~aL~nLa~~----~~~~~~i~e--~g~i~~L~~ll~~~~------------------~-~~-v~~-~a~~~L~~L 347 (534)
-..++.....++.. +..+..+.. ...++.++.-+..+. + .+ ... ..-.+|..+
T Consensus 361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l 440 (1023)
T 4hat_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence 66666655555431 001111110 223444444443322 0 00 111 111333333
Q ss_pred ccCCh-HHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccH--HHHHhcCcHHHHHHHHhc-----CCHH
Q 009471 348 TASNE-NLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKA-----GSLG 415 (534)
Q Consensus 348 a~~~~-~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~--~~l~~~~~i~~Lv~lL~~-----~~~~ 415 (534)
+.-.. ..-.. .++.+.+.+.+ -..++.++.+++.++..... ..-.-..+++.|+.++.. ....
T Consensus 441 ~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~ 515 (1023)
T 4hat_C 441 THLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAV 515 (1023)
T ss_dssp HHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred hccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHH
Confidence 32111 11111 12233333332 23689999999999983222 222223467778887753 2234
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 416 AQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 416 v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
++..++|++++.+.- ..+.+.+ ...+..|.+.+...++.++.+|+.++.+|+.
T Consensus 516 v~~t~~~~lGry~~wl~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHTCHHHHHHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 566788999887753 2222222 2346667777777788999999999999984
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.05 E-value=2.6 Score=48.01 Aligned_cols=296 Identities=12% Similarity=0.114 Sum_probs=167.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC-----c
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESG-----S 228 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~~-----~ 228 (534)
.+..++..+.+++.+.|.+|-..|.++-. ++ ++...+..+|. +.++.+|..|+..|.+..... +
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 35566666677777778888888876643 33 44555556554 456899999999999886532 1
Q ss_pred -hhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471 229 -CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (534)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (534)
.+..+ +..++..+...-.+. +..++...+.++..++..+ +..| .+.++.|+..++ .++..+..++.+
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHHHHHHHHH
Confidence 23332 223333333322111 3567888888888887642 2223 455688888886 566666777777
Q ss_pred HHHccCC-----c----hH-----HHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChH
Q 009471 302 LKNISAV-----P----EV-----RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365 (534)
Q Consensus 302 L~nLa~~-----~----~~-----~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~ 365 (534)
|..++.. . .. +..+.+ ..++..+..++.+.....++..++.++.+....-+. ..+++...++
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~ 238 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHH
Confidence 7776631 0 11 122332 233445556665544446889999999887653332 2345556666
Q ss_pred HHHH-hhcCCchHHHHHHHHHHhhcC---cc----HHHHHh--cCcHHHHHH-----------HH-h--cCCHHHHHHHH
Q 009471 366 SLLA-YLDGPLPQESAVGALRNLVGS---VS----QEVLIS--LGFFPRLVH-----------VL-K--AGSLGAQQAAA 421 (534)
Q Consensus 366 ~L~~-~L~~~~~~~~a~~aL~~La~~---~~----~~~l~~--~~~i~~Lv~-----------lL-~--~~~~~v~~~A~ 421 (534)
.+.+ ++.++.++..|+.+|..+... .. ...+.. .+++..+.. .. . ..+.+.....+
T Consensus 239 ~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~ 318 (1049)
T 3m1i_C 239 LLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLA 318 (1049)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHH
T ss_pred HHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHH
Confidence 6663 456688899999999998862 21 111110 112222211 11 1 12334444455
Q ss_pred HHHHHhcCC--------hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 422 SALCRVCTS--------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 422 ~aL~~la~~--------~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
..+..+... ++....+ ..+++.+++.....+.++...+.+....++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 319 MFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 555444321 1122222 2346666666666677788888777766654
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.98 E-value=6.4 Score=44.62 Aligned_cols=293 Identities=11% Similarity=0.099 Sum_probs=146.6
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC-c-hhHHHHh--cCCH
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG-S-CENWLVS--EGVL 239 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~-~-~~~~l~~--~g~i 239 (534)
.++++....++.+|..+..--+- ..+++.+.++.++ .+| ++++.+..|+.+|..+...+ + +...+.. .+++
T Consensus 218 ~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~ 293 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTM 293 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 45677777788888888765432 3566778888774 665 45789999999999998753 1 2222211 1112
Q ss_pred HHHHHHHc----------c---CCHHHHHHHHHHHHHhhcChhhHHHHHhC-C-------ChHHHHHHHccCChHHHHHH
Q 009471 240 PPLIRLVE----------S---GSTVGKEKATISLQRLSMSAEMARAIVGH-G-------GVRPLIEICQTGDSVSQAAA 298 (534)
Q Consensus 240 ~~Lv~lL~----------~---~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~-g-------~i~~Lv~ll~~~~~~~~~~a 298 (534)
..+-.++. . .+.+....-+.++..+.... ...+... + ++..++.+...++.++-..+
T Consensus 294 ~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~--~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kit 371 (1073)
T 3gjx_A 294 MQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH--GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 371 (1073)
T ss_dssp HHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH--HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 21212221 1 12223333344444432211 1112111 1 23445555566777776666
Q ss_pred HHHHHHccCC-----c-----------------hHHHHHH-h--hCcHHHHHHHhhcCCCh----------------h--
Q 009471 299 ACTLKNISAV-----P-----------------EVRQMLA-E--EGIVSVMIKLLDCGILL----------------G-- 335 (534)
Q Consensus 299 ~~aL~nLa~~-----~-----------------~~~~~i~-e--~g~i~~L~~ll~~~~~~----------------~-- 335 (534)
......|+.. + ..+..+. . ...+..++.-+..+.+. +
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 5554444321 0 0111111 0 12222333333222110 0
Q ss_pred ---HHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCcc--HHHHHhcCcHHHH
Q 009471 336 ---SKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVS--QEVLISLGFFPRL 405 (534)
Q Consensus 336 ---v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~--~~~l~~~~~i~~L 405 (534)
.....-.+|..++.-+ +..-.. ..+.+-+.+++ ....+.++++++.++..-. .+.-.=..+++.|
T Consensus 452 ~~~ly~~mrd~L~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~L 526 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDL 526 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHH
Confidence 1112223333333211 111111 12233333333 2357899999999986222 1211123356666
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 406 VHVLKAG-----SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 406 v~lL~~~-----~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
+.+.... .+.++...++++++.++- ..+.+.+ ...+..|++.+...++.++.+|+.++..++.
T Consensus 527 l~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 527 LGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred hcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 6666443 123455556777776643 2333333 2347788888888899999999999999973
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.79 E-value=0.021 Score=53.31 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHH-----HHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHH
Q 009471 164 QIGHLEAKHKALDS-----LVEAMKEDE-KNVLAVMGRSNIAALVQLLTATSPRIREKTVTV 219 (534)
Q Consensus 164 ~~~~~~~~~~A~~~-----L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~ 219 (534)
++.++++|..++.. |..++.+.+ ..+......-..+.|..+++++++.||..++..
T Consensus 60 ~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 60 ADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp TCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHh
Confidence 44555555555532 233333322 223333332234567778888888999888764
No 110
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.58 E-value=0.56 Score=45.04 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCC----HHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV----LPPLIRLVES-GSTVGKEKATISLQRLSMSAEMAR 272 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~----i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~ 272 (534)
+..+.++++-+ .+.+--++..++.+..++.....+.+.+. +..+...+.+ ..+..+-.++++++|+..++..+.
T Consensus 105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 45555555333 23444555555555544443333333322 2233344432 355668899999999999988877
Q ss_pred HHHhC--CChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH-hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 273 AIVGH--GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA-EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 273 ~l~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
.+..+ ..++.+...+.+.+..++..++..+.|++.........- ...++..+..+++...+.+..+.++.+|+++..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 66542 233444444455688899999999999986320000000 122455555666555555899999999999998
Q ss_pred CChHHHHHH
Q 009471 350 SNENLRRSV 358 (534)
Q Consensus 350 ~~~~~~~~i 358 (534)
.++..++..
T Consensus 264 ~~~~~~~la 272 (304)
T 3ebb_A 264 DDSNAVQLA 272 (304)
T ss_dssp TCHHHHHHH
T ss_pred CChhHHHHH
Confidence 766655433
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.39 E-value=2 Score=39.19 Aligned_cols=179 Identities=8% Similarity=0.020 Sum_probs=110.5
Q ss_pred hhhhhchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471 149 EATTHGNTRELLARLQIGH--LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226 (534)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~--~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (534)
...+..+|..++..+..-. -....+++..+..-. +.+ ..++....+.+++..++|..|+..|+.+ .
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~--~~~--------~~~~la~~L~~~~~deVR~~Av~lLg~~-~- 99 (240)
T 3l9t_A 32 RGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSN--DGE--------YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S- 99 (240)
T ss_dssp --CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHS--CHH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-
T ss_pred hhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhC--CHH--------HHHHHHHHHHhCcchHHHHHHHHHHHhc-c-
Confidence 4456677888877764311 112223333333321 111 2234444566677789999999988887 2
Q ss_pred CchhHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHH
Q 009471 227 GSCENWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK 303 (534)
Q Consensus 227 ~~~~~~l~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~--~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~ 303 (534)
.. ...++.+.. +-.+.+-.+++.++.++..++. +++. .++.+...+.++++.+|..|...++
T Consensus 100 -~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 100 -KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp -TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHHHCSSHHHHHHHHHHTC
T ss_pred -Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhcCCCHHHHHHHHHhhH
Confidence 11 123566655 5566788999999999999874 3332 3477788899999999999988876
Q ss_pred HccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH
Q 009471 304 NISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV 358 (534)
Q Consensus 304 nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i 358 (534)
--+..+.. ..+ .-+++.+-.+..+++. .+|......|..++..+++.-..+
T Consensus 165 pW~~~~~~---k~dp~~ll~iL~~L~~D~s~-yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 165 IWTNRPYF---KENPNEAIRRIADLKEDVSE-YVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp SGGGSTTT---TTCHHHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccchh---hcCHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHhhhCHHHHHHH
Confidence 43332211 111 2234545455555554 899999999999999887654333
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.09 E-value=3.4 Score=41.76 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=93.0
Q ss_pred hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHH
Q 009471 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI 243 (534)
Q Consensus 164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv 243 (534)
..|+...|.-|+.-+....+.-|+... .++..++.++.+.+..+|..|++.|..+|.+ +....+ ...|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHH
Confidence 467889999999999999988886533 5688999999999999999999999999988 544443 88999
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHH
Q 009471 244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK 303 (534)
Q Consensus 244 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~ 303 (534)
++|.++++.-....-.+|..+-..+. +.. +..+...+..+++.+|..++.-|.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp-k~t------l~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA-KGT------LGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH-HHH------HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh-HHH------HHHHHHHHcccchHHHHHHHHHHH
Confidence 99999888777777777777654322 222 245555555567888887777664
No 113
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.38 E-value=1.7 Score=40.71 Aligned_cols=174 Identities=14% Similarity=0.056 Sum_probs=106.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh----hcCCChhHHHHHHHHHHHHccC----Ch
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQNLTAS----NE 352 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll----~~~~~~~v~~~a~~~L~~La~~----~~ 352 (534)
+.+...+-+.|...+..++..|..... .+...+.. .++.+++.+ .+.+. .+...++..|..+... +.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~-~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNP-AALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhccc
Confidence 344444555677666667766655332 11222221 233334433 24444 6777888887776531 00
Q ss_pred HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
..... --.-.+|.|+.-+.+ +.+|+.+-.++..++.-.. ...+++.+++-+++.+..++...+..+..+-..
T Consensus 124 ~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 124 PMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 00000 001247888887766 4588888888877764111 123567788888999999999999888887632
Q ss_pred hhHHHHHHhcCch---HHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 431 AEMKKLVGEAGCT---PLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 431 ~~~~~~i~~~g~v---~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
-... ...++ +.+.+++.+.+..+|..|..++..+-
T Consensus 198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1111 23468 99999999999999999999998664
No 114
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.31 E-value=9.9 Score=42.78 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC---CHHHHHHHHHHHHHhhc--CCc----hhHHHHhcC
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT---SPRIREKTVTVICSLAE--SGS----CENWLVSEG 237 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~--~~~----~~~~l~~~g 237 (534)
+++.|.+|-..|.++=. ++ ++......+|..+ ++.+|..|+..|.+... .++ .+ .-++..
T Consensus 21 d~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~-~~lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL-QMIRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HHHHHH
Confidence 67888888877777643 23 4556666777654 68999999988887654 122 22 222333
Q ss_pred CHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccC-------
Q 009471 238 VLPPLIRLVE-SGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISA------- 307 (534)
Q Consensus 238 ~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~------- 307 (534)
++..+.+.-. .++..++.+.+.++..+.... +..| .+.++.++.++..+++ ......+++|..+..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 3444433110 235678888898888887542 1122 3445777777765444 333444455542222
Q ss_pred --Cc-------hHHHHHHhh---CcHHHHHHHhhc----CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471 308 --VP-------EVRQMLAEE---GIVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL 371 (534)
Q Consensus 308 --~~-------~~~~~i~e~---g~i~~L~~ll~~----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L 371 (534)
.. +.++.+.+. .+++....++.. .++ .++..++.+|.....--+. ..+++...++.+++++
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~-~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNY-GTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHT
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHc
Confidence 00 112233221 124444444433 444 7888999999998873222 3456677888899999
Q ss_pred cCCchHHHHHHHHHHhhc-CccH---HHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCC-------h-----hH
Q 009471 372 DGPLPQESAVGALRNLVG-SVSQ---EVLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTS-------A-----EM 433 (534)
Q Consensus 372 ~~~~~~~~a~~aL~~La~-~~~~---~~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~la~~-------~-----~~ 433 (534)
.+++++..|+.+|..+.. .... ..++..=.+...+..+. ..+.+..+.-++.+..++.. + +.
T Consensus 243 ~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~ 322 (980)
T 3ibv_A 243 QIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPEL 322 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhh
Confidence 889999999999999987 2222 12222101111121122 45666655555444433211 1 11
Q ss_pred H----HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 434 K----KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 434 ~----~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+ ..+ .+.++.++.++..++.++...+...+..+.
T Consensus 323 ~~~~~~~l--~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 323 KENCSFQL--YNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHHHHH--HHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred hhhHHHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 1 122 357888888888888888777776666554
No 115
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.31 E-value=0.63 Score=44.66 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=96.5
Q ss_pred hHHHHHhhc-CCchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHH----HHHh-cCCHHHHHHHHHHHHHhcCChhHHHH
Q 009471 364 IRSLLAYLD-GPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLV----HVLK-AGSLGAQQAAASALCRVCTSAEMKKL 436 (534)
Q Consensus 364 l~~L~~~L~-~~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv----~lL~-~~~~~v~~~A~~aL~~la~~~~~~~~ 436 (534)
+..+.+++. ..+.+.+++..++.++. +.....+.+.+.-..++ ..+. ...+..+..++++++|+..++..+..
T Consensus 105 l~~l~kil~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~ 184 (304)
T 3ebb_A 105 LQILWKAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKL 184 (304)
T ss_dssp HHHHHHHHTSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHH
T ss_pred HHHHHHHHcCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHH
Confidence 344555542 14567778888888776 32223333322223333 3332 23567799999999999999888887
Q ss_pred HHhc--CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 437 VGEA--GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 437 i~~~--g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+... ..++.+...+.+.+..+|..++-.+.|++....+...+-.....+..+.++++...+.+....++.+|.+|...
T Consensus 185 l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 185 MMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 7643 24444554555678899999999999998431110011111123455556666555567888899999998865
Q ss_pred ---HHHHHHHHh
Q 009471 515 ---ARKLLERLE 523 (534)
Q Consensus 515 ---~k~~~~~l~ 523 (534)
.+.+.+.++
T Consensus 265 ~~~~~~lak~l~ 276 (304)
T 3ebb_A 265 DSNAVQLAKSLG 276 (304)
T ss_dssp CHHHHHHHHHTT
T ss_pred ChhHHHHHHHcC
Confidence 444444444
No 116
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.28 E-value=7 Score=38.69 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=112.1
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhh
Q 009471 158 ELLARLQIGHL-EAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLA 224 (534)
Q Consensus 158 ~Ll~~L~~~~~-~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La 224 (534)
.++..|+++.. +...+.+..|.--+.. +...+..+. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 34555555532 2233456666655544 445566676 6889999998852 23578899999999998
Q ss_pred cCCchhHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh--h-HHHH----------HhCCChHHHHHHHcc-
Q 009471 225 ESGSCENWL-VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAI----------VGHGGVRPLIEICQT- 289 (534)
Q Consensus 225 ~~~~~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~l----------~~~g~i~~Lv~ll~~- 289 (534)
.+......+ -....+..|+..|.+.++.++..+...|..+|..++ + ...+ .+..-...++..+..
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 228 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence 777644444 455789999999999999999999999998886543 2 2211 123446778888876
Q ss_pred CChHHHHHHHHHHHHccCCc-------hHHHHHHhhCcHHHHHHHhhcCCC
Q 009471 290 GDSVSQAAAACTLKNISAVP-------EVRQMLAEEGIVSVMIKLLDCGIL 333 (534)
Q Consensus 290 ~~~~~~~~a~~aL~nLa~~~-------~~~~~i~e~g~i~~L~~ll~~~~~ 333 (534)
.+.+.+..+...+-.+...+ ..|..+...|..+.+-. ++....
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~ 278 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIEN 278 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCC
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCC
Confidence 45566666655555555433 24455556676555544 554443
No 117
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.87 E-value=8.4 Score=43.67 Aligned_cols=219 Identities=11% Similarity=0.073 Sum_probs=136.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC-----
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESG----- 227 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~----- 227 (534)
..+..++..+.+++.+.|.+|-..|.++- .++ ++...+..+|.. .++.+|..|+..|.+.....
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 34666777777788888888777776643 333 334444455544 46999999999999887642
Q ss_pred chhHHHHhcCCHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471 228 SCENWLVSEGVLPPLIRLVES-----GSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (534)
Q Consensus 228 ~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (534)
+....-++..++..+.+.-.+ .++.++...+.++..+...+ +..| .+.++.++..++. ++......+.+
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 222222333445555554332 24566677888888876542 1122 3445777777754 44555666777
Q ss_pred HHHccCC--c------------hHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChH
Q 009471 302 LKNISAV--P------------EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365 (534)
Q Consensus 302 L~nLa~~--~------------~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~ 365 (534)
|..|+.. . ..++.+.+ ..++..+..++......++...++.+|..+..--+- ..+++.+.++
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~ 250 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLIS 250 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHH
Confidence 7766542 0 11223333 234444555555544446778888999998874332 3567788888
Q ss_pred HH-HHhhcCCchHHHHHHHHHHhhc
Q 009471 366 SL-LAYLDGPLPQESAVGALRNLVG 389 (534)
Q Consensus 366 ~L-~~~L~~~~~~~~a~~aL~~La~ 389 (534)
.+ ..++.++..+..|+.+|..+..
T Consensus 251 ~L~~~~L~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 251 TLIYKFLNVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHh
Confidence 87 5888889999999999999987
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.82 E-value=3.5 Score=37.77 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=98.4
Q ss_pred HHHHHHHHHhh-cChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcCCchhHHHH-hcCCH
Q 009471 173 KALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGSCENWLV-SEGVL 239 (534)
Q Consensus 173 ~A~~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~~~~~l~-~~g~i 239 (534)
+-+..|.-.+. .+......+ ..+|+..|+..|.. .+.+.+..++.+|..+.........+. ..+.+
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHH
Confidence 34455544444 344556666 56888888887753 135778899999999987776444444 45789
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcChh--h-HHHH----------HhCCChHHHHHHHcc-CChHHHHHHHHHHHHc
Q 009471 240 PPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAI----------VGHGGVRPLIEICQT-GDSVSQAAAACTLKNI 305 (534)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~l----------~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 305 (534)
..++..|.+.++.++..+...|..++..++ . ...+ .+..-...+++.++. .+.+.+..++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988886543 3 2221 122345567777764 3445555555555445
Q ss_pred cCCc-------hHHHHHHhhCcHHHHHHHhhc
Q 009471 306 SAVP-------EVRQMLAEEGIVSVMIKLLDC 330 (534)
Q Consensus 306 a~~~-------~~~~~i~e~g~i~~L~~ll~~ 330 (534)
...+ ..|..+...|..+.+ +-++.
T Consensus 179 i~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~ 209 (233)
T 2f31_A 179 ITPAEELDFRVHIRSELMRLGLHQVL-QELRE 209 (233)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 4433 244555556655444 44443
No 119
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.64 E-value=2.9 Score=40.25 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=87.3
Q ss_pred HHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHH
Q 009471 262 QRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYA 340 (534)
Q Consensus 262 ~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a 340 (534)
.+|-.+ ++...-++...|+..+..+..-++.++..+.+..|.+++.....+.. --.+.+|.++..++-..+.++.+..
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~eDdvvYSG 345 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHPDDEVIYSG 345 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCCCcceEEec
Confidence 344444 44456799999999999999999999999999999998875433321 1156789999888644334899999
Q ss_pred HHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471 341 AECLQNLTASNENLRRSVVSEGGIRSLLAYL 371 (534)
Q Consensus 341 ~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L 371 (534)
.+.|.|...+....++..+..|.+..|-..+
T Consensus 346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred chHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 9999999999999999999999999988876
No 120
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.23 E-value=2.5 Score=47.86 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=137.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcC-----Cc
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAES-----GS 228 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~-----~~ 228 (534)
.+..++..+.+++.+.|.+|-..|.++-. ++ ++...+..+|. +.++.+|..|+..|.+.... ++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 46667777777777777777777766543 33 34444555554 45689999999999888653 22
Q ss_pred hhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHH
Q 009471 229 CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 302 (534)
.....++..++..+.+.-.++ ...++...+.++..+...+ +..| .+.++.++..++. ++......+..|
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W----p~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc----hHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 222333444455555543322 3456667788888876643 1222 4456778888764 444455566666
Q ss_pred HHccCC---------c-----hHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471 303 KNISAV---------P-----EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (534)
Q Consensus 303 ~nLa~~---------~-----~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (534)
..|+.. . ..+..+.+ ..++..+..++......++...++.++.....--+- ..+++...++.
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i--~~i~~~~ll~~ 239 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY--RYIYETNILEL 239 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH--HHhcchhHHHH
Confidence 655431 1 12222332 344555566665544337888899999988863222 35667788999
Q ss_pred HH-HhhcCCchHHHHHHHHHHhhc
Q 009471 367 LL-AYLDGPLPQESAVGALRNLVG 389 (534)
Q Consensus 367 L~-~~L~~~~~~~~a~~aL~~La~ 389 (534)
++ .++.++..+..|+.+|..+..
T Consensus 240 l~~~~L~~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 240 LSTKFMTSPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHc
Confidence 99 888888899999999999886
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.84 E-value=12 Score=37.85 Aligned_cols=241 Identities=14% Similarity=0.137 Sum_probs=131.3
Q ss_pred cCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHH
Q 009471 248 SGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK 326 (534)
Q Consensus 248 ~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ 326 (534)
.++...+..|+..+.....+ ++....- +..++.+|.+.|..+|..|...|..+|.+ +.... +...|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 35788999999999998765 5544432 38999999999999999999999999987 44333 4678999
Q ss_pred HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh-cC-CchHHHHHHHHHHhhcC---ccHHHHHhcCc
Q 009471 327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG-PLPQESAVGALRNLVGS---VSQEVLISLGF 401 (534)
Q Consensus 327 ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L-~~-~~~~~~a~~aL~~La~~---~~~~~l~~~~~ 401 (534)
+|..++. .-...+-.+|..+-..++.. .+..++..+ .+ +.+|+.++..|..=..+ +....=++.-+
T Consensus 108 lLqtdd~-~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 108 LLQTDDS-AEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HTTCCCH-HHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHhccch-HHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 9987765 33444445555555434322 233333332 22 45788877777654431 11111223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhHHHHHHhcCchHHHHHhh------cCCChHHHHHHHHH----HHHhc
Q 009471 402 FPRLVHVLKAGSLGAQQAAASALCRVC--TSAEMKKLVGEAGCTPLLIKLL------EAKPNSVREVAAQA----ISSLV 469 (534)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~la--~~~~~~~~i~~~g~v~~Lv~ll------~~~~~~v~~~A~~a----L~~L~ 469 (534)
+..+.+.|++-+..--......|..+- .....++.+ ++.+.... ...+.+....-..+ |-.++
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 556666665555433334444444333 223333333 22222221 12344444444433 33444
Q ss_pred CCCcchHHHHh--hCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 470 TLPQNCREVKR--DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 470 ~~~~~~~~~~~--~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
....+.+ |+. -.+.+|.+-.+-+..++++.|-.-+.++.-++..
T Consensus 254 ~~v~Stk-Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~ 299 (507)
T 3u0r_A 254 KNVHSTR-FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSF 299 (507)
T ss_dssp TTBCCHH-HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTT
T ss_pred cCCChHH-HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccC
Confidence 3333322 322 1134454433333322333666667777666654
No 122
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.66 E-value=4 Score=37.19 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=95.0
Q ss_pred hHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-CCchhH
Q 009471 155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAE-SGSCEN 231 (534)
Q Consensus 155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~-~~~~~~ 231 (534)
.+..++..|. +...++|..|+..|..+ ..+ ...++.+.. +-.+++-.||+.++.++..++. ..+.
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3445566554 45577788999877776 311 123555555 5556779999999999999985 3321
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh---hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA---EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA- 307 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~- 307 (534)
..++.+....++++..++..|...+.--+..+ .+...+ ++.|-.+..+++.-+|.+..+.|+.++.
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~l-----l~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEA-----IRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHH-----HHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHH-----HHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 25788889999999999999988764322211 111111 3556666778888999999999999998
Q ss_pred CchHHHHHHh
Q 009471 308 VPEVRQMLAE 317 (534)
Q Consensus 308 ~~~~~~~i~e 317 (534)
+|+.-..+++
T Consensus 209 ~Pd~V~~~~~ 218 (240)
T 3l9t_A 209 FPDLVKIELK 218 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4454444443
No 123
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.18 E-value=13 Score=36.88 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcCCchhHH-HHhcCCH
Q 009471 173 KALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGSCENW-LVSEGVL 239 (534)
Q Consensus 173 ~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~~~~~-l~~~g~i 239 (534)
+.+..|.-.+.. +......+. .+|+..|+..|.. .+...+..++.+|..+..+...... +...+++
T Consensus 24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence 345555544443 445556664 5888888887742 1367788999999999887764444 4455789
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcChh--h-HHHH----------HhCCChHHHHHHHcc-CChHHHHHHHHHHHHc
Q 009471 240 PPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAI----------VGHGGVRPLIEICQT-GDSVSQAAAACTLKNI 305 (534)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~l----------~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 305 (534)
..+...|.+.++.++..+...|..+|..++ . ...+ .+..-...++..+.. .+.+.+..++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988887543 2 2211 123345667777763 4455555555555445
Q ss_pred cCCc-------hHHHHHHhhCcHHHHHHHhhcCCChhHH
Q 009471 306 SAVP-------EVRQMLAEEGIVSVMIKLLDCGILLGSK 337 (534)
Q Consensus 306 a~~~-------~~~~~i~e~g~i~~L~~ll~~~~~~~v~ 337 (534)
...+ ..|..+...|..+.+ +-++....+.+.
T Consensus 183 v~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 183 ITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMK 220 (386)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhHH
Confidence 4433 345566666655554 555543332443
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.88 E-value=7.3 Score=38.56 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=99.1
Q ss_pred HHHHHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHH
Q 009471 271 ARAIVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKE 338 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~ 338 (534)
...|. .+|+..|+.++.. .+...+..++.||+.+.........+.. ...+..++..+.+... .++.
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~-~~~~ 180 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMI 180 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH-HHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch-HHHH
Confidence 34455 6788888888742 2346778899999999988766666665 7889999999887776 7899
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc-CCHHHH
Q 009471 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-GSLGAQ 417 (534)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~ 417 (534)
.++..|..+|...+. .||-+.+++.+ .++.. ..+..-+..++..+++ .+.+.+
T Consensus 181 ~aleLL~~lc~~~~~-------~gG~~~VL~Al-------------~~~~~------~~e~~RF~~lv~~L~~~~~~e~~ 234 (383)
T 3eg5_B 181 DAAKLLSALCILPQP-------EDMNERVLEAM-------------TERAE------MDEVERFQPLLDGLKSGTSIALK 234 (383)
T ss_dssp HHHHHHHHHHTCCSS-------TTHHHHHHHHH-------------HHHHH------HHTSCTTHHHHHTTSTTSCHHHH
T ss_pred HHHHHHHHHHhCcCc-------CCcHHHHHHHH-------------HHHHH------hCCCCcHHHHHHHHHccCcHHHH
Confidence 999999998875420 12233333322 22211 1123345566677765 456677
Q ss_pred HHHHHHHHHhcCC---h----hHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 418 QAAASALCRVCTS---A----EMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 418 ~~A~~aL~~la~~---~----~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
..+...+-.+..+ . ..+..+...|..+.+-++-...++++
T Consensus 235 ~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 235 VGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 6666666666544 1 34556667776666655443444433
No 125
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=89.67 E-value=4.5 Score=38.96 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=93.2
Q ss_pred HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHcc-CCHHHH
Q 009471 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES-GSTVGK 254 (534)
Q Consensus 177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~-~~~~~~ 254 (534)
-|.+++-++.....-++..+||..+....+-++.++.......|...+.... +..- -.+.+|.+++.++- ++.++.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcceE
Confidence 3566666777778889999999999999999999999999999988876554 2111 13468888888875 588899
Q ss_pred HHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccC-------ChHHHHHHHHHHHH
Q 009471 255 EKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKN 304 (534)
Q Consensus 255 ~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~n 304 (534)
......|.|...+... +..-...|+|+.|-..+... +..-+..+|+.++|
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 9999999999777544 55555689999888776532 23344556655554
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.56 E-value=6.7 Score=35.82 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=92.8
Q ss_pred hHHHHHHhhCcHHHHHHHhhc----C------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchH
Q 009471 310 EVRQMLAEEGIVSVMIKLLDC----G------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ 377 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~----~------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~ 377 (534)
..-+.+ ..+++..|++++.. + .+...+..++.||..+..........+-+..++..+...+++ +.++
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r 113 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 334444 35677777777642 1 122557889999999987444444444466788888888876 4567
Q ss_pred HHHHHHHHHhhc-Cc--c-HHHHHh----------cCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCh-------hHHH
Q 009471 378 ESAVGALRNLVG-SV--S-QEVLIS----------LGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSA-------EMKK 435 (534)
Q Consensus 378 ~~a~~aL~~La~-~~--~-~~~l~~----------~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~~-------~~~~ 435 (534)
..++..|..+|. +. . ...+++ ..-...+++.+++ .+.+.+..+...+-.+..++ ..|.
T Consensus 114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 193 (233)
T 2f31_A 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 193 (233)
T ss_dssp HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 888888988887 32 4 443322 2235567777753 45677777776666666542 3456
Q ss_pred HHHhcCchHHHHHhhcCCChHHHH
Q 009471 436 LVGEAGCTPLLIKLLEAKPNSVRE 459 (534)
Q Consensus 436 ~i~~~g~v~~Lv~ll~~~~~~v~~ 459 (534)
.+...|..+.+-++-...++++..
T Consensus 194 ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 194 ELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHCChHHHHHHHhccCCHHHHH
Confidence 667778666666555555555443
No 127
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.34 E-value=2.9 Score=39.60 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=94.3
Q ss_pred hchHHHHHHHHhcC------CHHHHHHHHHHHHHHhhcChHhHHHHhcC--CcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 009471 153 HGNTRELLARLQIG------HLEAKHKALDSLVEAMKEDEKNVLAVMGR--SNIAALVQLLTATSPRIREKTVTVICSLA 224 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~------~~~~~~~A~~~L~~l~~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~v~~~A~~~L~~La 224 (534)
...+......+++| +.+.-..|+..|.+++. +-++...+++. ..+..|+ +....++.+++.|+++|+..-
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL 98 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCL 98 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH
Confidence 34456666677777 45567788888888875 44444445432 2233333 234455889999999999999
Q ss_pred cCCc-hhHHHHh--cCCHHHHHHHHcc-------CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC--Ch
Q 009471 225 ESGS-CENWLVS--EGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DS 292 (534)
Q Consensus 225 ~~~~-~~~~l~~--~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~--~~ 292 (534)
.+++ ..+.+.+ ...+..++.-|.. ....+...-..+|..|..++. .| ...++..|.+++..+ ++
T Consensus 99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCH
T ss_pred ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCH
Confidence 9886 3333333 2445555444433 244566677788888887752 12 256788888888777 88
Q ss_pred HHHHHHHHHHHHcc
Q 009471 293 VSQAAAACTLKNIS 306 (534)
Q Consensus 293 ~~~~~a~~aL~nLa 306 (534)
.++..++..+..+-
T Consensus 175 ~~k~Kvl~li~d~f 188 (315)
T 3qml_C 175 QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888777776544
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.24 E-value=29 Score=39.32 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=114.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhc----Ch
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSM----SA 268 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~----~~ 268 (534)
+..+.+++.++.....+ |+.+|..+... .+..+ .+..+..++++ .++.++..+.-++..|.. +.
T Consensus 358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 56666677665522222 33333332221 12222 25566667765 356677777766666642 21
Q ss_pred hhHHHHHhCCChHH----HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhc------CCChhHHH
Q 009471 269 EMARAIVGHGGVRP----LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC------GILLGSKE 338 (534)
Q Consensus 269 ~~~~~l~~~g~i~~----Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~------~~~~~v~~ 338 (534)
..+ ....++. |.+.+..++..-+..++.+|+|+... ..++.+.+++.. ..+..++.
T Consensus 431 ~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 431 VSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp SSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred CCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHH
Confidence 111 1111333 44455667777788999999998752 356777777642 12235778
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc-CC
Q 009471 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-GS 413 (534)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~-~~ 413 (534)
.|+.+|..++...+..- -+.++++..| +++|..|+..|.....+ ...+..+...+.. .+
T Consensus 497 aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~--------~~~l~~ia~~l~~E~~ 560 (1056)
T 1lsh_A 497 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESKPS--------VALVSMVAVRLRREPN 560 (1056)
T ss_dssp HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC--------HHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHCcC--------HHHHHHHHHHHhhCch
Confidence 89999999987554322 2345565533 56788887777543321 1245666666654 56
Q ss_pred HHHHHHHHHHHHHhcCC
Q 009471 414 LGAQQAAASALCRVCTS 430 (534)
Q Consensus 414 ~~v~~~A~~aL~~la~~ 430 (534)
..|.......|.+++.+
T Consensus 561 ~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 561 LQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77877788888888765
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.82 E-value=13 Score=42.32 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=108.1
Q ss_pred hHHHHHHHHhc----CCHHHHHHHHHHHHHHhhc----ChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471 155 NTRELLARLQI----GHLEAKHKALDSLVEAMKE----DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226 (534)
Q Consensus 155 ~i~~Ll~~L~~----~~~~~~~~A~~~L~~l~~~----~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (534)
.+..+...+.+ .++..+..++-++..++.. ++.+....+. .....|.+.++..+.+-+..++.+|+|+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 34444555543 4566666777777666531 1111001110 1233444555677788889999999999853
Q ss_pred CchhHHHHhcCCHHHHHHHHcc-------CCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHH--ccCChHHHH
Q 009471 227 GSCENWLVSEGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEIC--QTGDSVSQA 296 (534)
Q Consensus 227 ~~~~~~l~~~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll--~~~~~~~~~ 296 (534)
. .++.|.+++.. ....++..|.++|.+++...+ ..+ +.+..+. ...++++|.
T Consensus 471 ~----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 471 N----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp G----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred h----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHH
Confidence 2 46777777742 245678889999999986532 222 4566777 457889999
Q ss_pred HHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 297 AAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 297 ~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
.|+..|..-. |. ...+..+...+..+...++.......|.+++.....
T Consensus 533 aA~~~Lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVFFESK--PS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHTC--CC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHC--cC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 8888885422 21 234666777777655568888999999999986543
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=83.49 E-value=33 Score=33.86 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=96.5
Q ss_pred HHHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471 273 AIVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA 340 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a 340 (534)
.|. .+|+..|+.++.. .+...+..++.||+.+.........+.. .+++..++..+.+... .++..+
T Consensus 43 ~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~-~~r~~v 120 (386)
T 2bnx_A 43 TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDA 120 (386)
T ss_dssp HHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-HHHHHH
T ss_pred HHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc-hHHHHH
Confidence 443 5777777777642 1345678899999999988755555555 7788888888876665 788889
Q ss_pred HHHHHHHccCChHHHHHHHhcCC-hHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh-cCCHHHHH
Q 009471 341 AECLQNLTASNENLRRSVVSEGG-IRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK-AGSLGAQQ 418 (534)
Q Consensus 341 ~~~L~~La~~~~~~~~~i~~~g~-l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~ 418 (534)
+..|..+|..++. +| -+.+++.++ +... ..+..-+..++..+. +.+.+.+.
T Consensus 121 leLL~alc~~~~~--------~G~~~~VL~Al~-------------~~~~------~~e~~RF~~lv~~l~~~~~~e~~~ 173 (386)
T 2bnx_A 121 AKLLSALCILPQP--------EDMNERVLEAMT-------------ERAE------MDEVERFQPLLDGLKSGTSIALKV 173 (386)
T ss_dssp HHHHHHHHTCCSS--------TTHHHHHHHHHH-------------HHHH------HHTSCTTHHHHHHTSTTSCHHHHH
T ss_pred HHHHHHHHcCCCC--------CChHHHHHHHHH-------------HHHH------hCchhhHHHHHHHHHcCChHHHHH
Confidence 9999988874431 12 333333332 2211 112333556777775 44566776
Q ss_pred HHHHHHHHhcCC-h------hHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 419 AAASALCRVCTS-A------EMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 419 ~A~~aL~~la~~-~------~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
.++..+-.+..+ + ..|..+...|..+.+-++-...++.+
T Consensus 174 a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 174 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 666666666654 2 35566777776666655544455444
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=79.09 E-value=2.5 Score=35.33 Aligned_cols=69 Identities=9% Similarity=0.015 Sum_probs=58.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+....++..|++++...++.|+..+...+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 466777778899999999999988888854 777888877788999999998788999999999998876
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.51 E-value=3.8 Score=34.58 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=60.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHhcCC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~A~~aL~~L~~~ 471 (534)
.+..|.+-|+++++.++..|+..|-.+..+ ..+...+....++..|++++.. .+..|+..++..+...+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466777778899999999999999999854 7888999888999999999874 3789999999999888733
No 133
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=77.28 E-value=81 Score=36.23 Aligned_cols=251 Identities=13% Similarity=0.099 Sum_probs=138.2
Q ss_pred cCCHHHHHHHHHHHHHHhhc-----ChHhHHHHhcCCcHHHHHHHhcC---CCHHHHHHHHHHHHHhhcCC--chhHHHH
Q 009471 165 IGHLEAKHKALDSLVEAMKE-----DEKNVLAVMGRSNIAALVQLLTA---TSPRIREKTVTVICSLAESG--SCENWLV 234 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~-----~~~~~~~i~~~g~v~~Lv~lL~~---~~~~v~~~A~~~L~~La~~~--~~~~~l~ 234 (534)
+.+...|..|+..|.+.+.. +++.+..+ ....+..+...-.. .+..++...+.++..++..+ +..
T Consensus 58 s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W---- 132 (1204)
T 3a6p_A 58 TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW---- 132 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----
Confidence 44678888888888887643 23332222 22333333332111 35889999999999988653 222
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-------hhhHH-----HHHhCCChHHHH----HHHcc---------
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-------AEMAR-----AIVGHGGVRPLI----EICQT--------- 289 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-------~~~~~-----~l~~~g~i~~Lv----~ll~~--------- 289 (534)
.+.++.++.++++ ++..++.+..+|..|+.. ...+. .+.+. ++.++ .++..
T Consensus 133 -p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 133 -PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp -TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccc
Confidence 3568888888876 555677788888888643 01111 12211 33333 33322
Q ss_pred ----------CChHHHHHHHHHHHHccCCchHHHHHHhhC--cHHHHHHHhhcCCChhHHHHHHHHHHHHccCC--hHHH
Q 009471 290 ----------GDSVSQAAAACTLKNISAVPEVRQMLAEEG--IVSVMIKLLDCGILLGSKEYAAECLQNLTASN--ENLR 355 (534)
Q Consensus 290 ----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g--~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~--~~~~ 355 (534)
+++.+...++.++.+....-.. ..+.+.. .++.++.++.+ + +++..|+.||..+.... +..+
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~--~-~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNE--Q-ELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGC--T-TTHHHHHHHHHHHHTCCSCHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCC--H-HHHHHHHHHHHHHHhCCCChhhH
Confidence 1234556677777665543222 2233332 67777766553 3 68999999999999743 2322
Q ss_pred HHHHh---cCChHHHHHhhc-------C---CchHHHHHHHHHHhhcCccHHHHHh-----------cCcHHHHHHHHhc
Q 009471 356 RSVVS---EGGIRSLLAYLD-------G---PLPQESAVGALRNLVGSVSQEVLIS-----------LGFFPRLVHVLKA 411 (534)
Q Consensus 356 ~~i~~---~g~l~~L~~~L~-------~---~~~~~~a~~aL~~La~~~~~~~l~~-----------~~~i~~Lv~lL~~ 411 (534)
..++. ..++..+++... + .+..+..+..+..+... ...+.+ .++++.++.+..+
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~--l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~ 362 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ--LCALLGADSDVETPSNFGKYLESFLAFTTH 362 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH--HHHHHHTCSSCCCCTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHhccccccChhHHHHHHHHHHHHHhC
Confidence 22221 111334444431 1 12344455555555421 111111 2457777777788
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q 009471 412 GSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 412 ~~~~v~~~A~~aL~~la~~ 430 (534)
.+..+-..++.....+..+
T Consensus 363 ~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 363 PSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHSC
T ss_pred ccHHhHHHHHHHHHHHHhc
Confidence 8888888887766666544
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.25 E-value=4.1 Score=34.41 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=59.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHhcC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLVT 470 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~A~~aL~~L~~ 470 (534)
.+..|.+-+.++++.++..|+..|-.+..+ ..+...+....++..|++++.. .++.|+..++..+...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 466777788899999999999999998854 7888889888899999999963 578899999999998873
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.97 E-value=3.9 Score=35.16 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=58.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~ 469 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+....++..|++++.. .++.|+..+...+....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 456677778899999999999999988854 7788888888899999999875 57899999999888776
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.57 E-value=9.1 Score=32.76 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=58.3
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~ 226 (534)
..++.+..+|+++++.++..|+..|-.+.+.. +.....+.....++.|+++++. .++.|++.++..+...+..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999998888887764 4455566667888899998876 5689999999988887653
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.70 E-value=8.4 Score=32.05 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=57.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (534)
..++.+..+|+++++..+..|+..|-.+.+.. +.....+.....+..|+++++..++.|++..+..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44677888999999999999998777777654 3444566666788889998887889999999999988764
No 138
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.60 E-value=14 Score=34.87 Aligned_cols=144 Identities=12% Similarity=0.104 Sum_probs=93.1
Q ss_pred HHHHHHHhhcC--CC---hhHHHHHHHHHHHHccCChHHHHHHH-hcCChHHHHHhhcC--CchHHHHHHHHHHhhc--C
Q 009471 321 VSVMIKLLDCG--IL---LGSKEYAAECLQNLTASNENLRRSVV-SEGGIRSLLAYLDG--PLPQESAVGALRNLVG--S 390 (534)
Q Consensus 321 i~~L~~ll~~~--~~---~~v~~~a~~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~ 390 (534)
+..+..++.++ .. .+..+.++..|..++.+-...-..+- +...+..|+ +... +.+++.+.++|+..-+ |
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 44556666666 11 13466788888888865444433333 222333333 1122 4578999999999888 3
Q ss_pred ccHHHHHh--cCcHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCChh-HHHHHHhcCchHHHHHhhcCC--ChHHH
Q 009471 391 VSQEVLIS--LGFFPRLVHVLKA-------GSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIKLLEAK--PNSVR 458 (534)
Q Consensus 391 ~~~~~l~~--~~~i~~Lv~lL~~-------~~~~v~~~A~~aL~~la~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~v~ 458 (534)
+....+.+ ..++..++.-|.. ....+++.-+.+|..|..++. +. ..++..|.+++... ++.++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHH
Confidence 33344433 5677777766543 345788888999999998752 32 34678888888766 89999
Q ss_pred HHHHHHHHHhcC
Q 009471 459 EVAAQAISSLVT 470 (534)
Q Consensus 459 ~~A~~aL~~L~~ 470 (534)
..++..+..+..
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999999998873
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.29 E-value=12 Score=31.34 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=60.3
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC------CCHHHHHHHHHHHHHhhc
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAE 225 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~ 225 (534)
...++.+..+|+++++.++..|+..|-.+.+. .+.....+.....+..|++++.. .+..|++.++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33467788899999999999999888888876 44565677777889999999874 368999999999988875
Q ss_pred CC
Q 009471 226 SG 227 (534)
Q Consensus 226 ~~ 227 (534)
.-
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=73.78 E-value=5.4 Score=34.54 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=59.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHhcCC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~A~~aL~~L~~~ 471 (534)
.+..|.+-|+++++.++..|+..|-.+..+ ..++..+.+..++..|++++.. .+..|+..+++.+......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356777888899999999999999999865 6788888888899999999963 3588999999999988733
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=71.73 E-value=12 Score=32.20 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=59.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~~ 226 (534)
..++.+..+|+++++.++..|+..|-.+.+... .....+.....+..|+++++. .+..|++.++..+...+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999988888887654 455567777889999999863 3589999999999888764
Q ss_pred C
Q 009471 227 G 227 (534)
Q Consensus 227 ~ 227 (534)
-
T Consensus 130 f 130 (171)
T 1juq_A 130 L 130 (171)
T ss_dssp C
T ss_pred c
Confidence 3
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.08 E-value=6.5 Score=35.74 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=58.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~ 469 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+....++..|++++. ..++.|+..+++.+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 366777788899999999999999999865 677888888888888988886 457889999999998886
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=69.06 E-value=17 Score=30.47 Aligned_cols=74 Identities=20% Similarity=0.145 Sum_probs=59.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~~ 226 (534)
..++.+..+|++.++..+..|+..|-.+.+... .....+.....+..|+++++. .++.|++..+..+...+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 447788889999999999999988888876544 445667777889999999963 4689999999999888754
Q ss_pred C
Q 009471 227 G 227 (534)
Q Consensus 227 ~ 227 (534)
-
T Consensus 128 f 128 (149)
T 3g2s_A 128 L 128 (149)
T ss_dssp C
T ss_pred h
Confidence 3
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.48 E-value=11 Score=34.04 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=57.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~ 469 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+.+..++..|++++. ..+..++..+++.+....
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 356677778899999999999999999865 667788877788999999886 456889999998888776
No 145
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=57.04 E-value=60 Score=31.86 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh-cChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
+-+++..-+....+.|...+..+.+++. .++. +. ...++.++.+-.+.+.++|...+..|...+.... +.
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~--el-- 97 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI--EL-- 97 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG--GG--
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH--HH--
Confidence 5555555544333679999999999754 4452 33 3779999999888899999999999998876432 11
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRL 264 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 264 (534)
-..+++.|..+|++.++.+...+..+..++
T Consensus 98 ~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 98 LLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 123578888899988888888877776664
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.51 E-value=29 Score=31.31 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~ 226 (534)
..++.+..+|+++++.++..|+..|-.+.+. .+.....+.....++.|+++++. .++.|++.++..+...+..
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3467788899999999999999888777764 34455666677778888888865 4589999999999888753
No 147
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=54.41 E-value=1.3e+02 Score=27.57 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=93.8
Q ss_pred hhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch
Q 009471 151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (534)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (534)
..+..+-+++..-+....+.|...+....+++.. ++.... ..++.++.+..+++.++|...+..+...+....
T Consensus 12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~- 85 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV- 85 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-
Confidence 3445566777777765557999999999997654 443332 456777777777789999999999988885443
Q ss_pred hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH--------hhcChh------hHHHHHhCCChHHHHHHHccCChHHH
Q 009471 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR--------LSMSAE------MARAIVGHGGVRPLIEICQTGDSVSQ 295 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~--------Ls~~~~------~~~~l~~~g~i~~Lv~ll~~~~~~~~ 295 (534)
-....+++.|..++++.++.+...+..+..+ ++.++. ..|... ...-..++.+..+++..++
T Consensus 86 ---~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m-~~lK~~Il~~~~s~n~gvk 161 (257)
T 3gs3_A 86 ---ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL-SLIKAQILDMIDNENDGIR 161 (257)
T ss_dssp ---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH-HHHHHHHHHGGGSSCHHHH
T ss_pred ---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHHHHHccCCcchH
Confidence 1122358888889998888888877765444 333322 233211 1111344556677788888
Q ss_pred HHHHHHHHH
Q 009471 296 AAAACTLKN 304 (534)
Q Consensus 296 ~~a~~aL~n 304 (534)
..+...+-.
T Consensus 162 l~~iKF~e~ 170 (257)
T 3gs3_A 162 TNAIKFLEG 170 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765544
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.25 E-value=30 Score=31.01 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=56.8
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-hHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAE 225 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~ 225 (534)
..++.+..+|+++++.++..|+..|-.+...... ....+.....++.|+.+++. .+..+++.++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999888888876543 44566666788888888865 458999999988887764
No 149
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.33 E-value=23 Score=30.01 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=55.5
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHH-HHHhhcC---CChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLK-AGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPL-LIKLLEA---KPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~-Lv~ll~~---~~~~v~~~A~~aL~~L~ 469 (534)
.+..|.+-|+ ++++.++..|+..|-.+..+ ..+...+.+..++.. |++++.. .+..|+..+++.+....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3566777776 57899999999999998854 788888888889998 8898852 34689999999888875
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.09 E-value=51 Score=27.75 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=55.3
Q ss_pred chHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHH-HHHHhcC---CCHHHHHHHHHHHHHhhc
Q 009471 154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAA-LVQLLTA---TSPRIREKTVTVICSLAE 225 (534)
Q Consensus 154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~-Lv~lL~~---~~~~v~~~A~~~L~~La~ 225 (534)
..++.+..+|+ .+++.++..|+..|-.+.+.. +.....+.+...++. |++++.. ++..|++.++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 34677888897 589999999998888888764 555556777778887 8888843 346899999988887765
No 151
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.33 E-value=13 Score=34.33 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHhhcC-CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcCChh-HHHHHHhcCch
Q 009471 368 LAYLDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCT 443 (534)
Q Consensus 368 ~~~L~~-~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~~la~~~~-~~~~i~~~g~v 443 (534)
.+++.. | .+.+++..++.+.. +... +.+..++. .+.+.++..+..++++++|+-.++. .+..+......
T Consensus 62 ~ki~~~WP-~~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~ 134 (253)
T 3gae_A 62 NTIRSNWE-IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVY 134 (253)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHH
T ss_pred HHHHHhCC-ccchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhH
Confidence 344444 5 57778888888887 3322 23333332 2345578899999999999999887 56665433223
Q ss_pred HHHHHhhc--------CCChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCC----C----CchhHHHHHHH
Q 009471 444 PLLIKLLE--------AKPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDP----S----PQNTAKKYAVA 506 (534)
Q Consensus 444 ~~Lv~ll~--------~~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~----~----~~~~~k~~a~~ 506 (534)
..+++.+. ..+..+|..++-.+.|++.... ++. +-.....++..+.. . .+++....+..
T Consensus 135 ~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~Lv 210 (253)
T 3gae_A 135 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTV 210 (253)
T ss_dssp TTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 44444431 1356788888889999884311 111 11233445544442 1 13467788888
Q ss_pred HHHhhchh
Q 009471 507 CLASLSPS 514 (534)
Q Consensus 507 ~L~~L~~~ 514 (534)
+|.+|...
T Consensus 211 AlGtL~~~ 218 (253)
T 3gae_A 211 AYGNLATV 218 (253)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88888853
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=34.82 E-value=1.2e+02 Score=24.95 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=50.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcC-chHHHHHhhcCCC--------hHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAG-CTPLLIKLLEAKP--------NSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g-~v~~Lv~ll~~~~--------~~v~~~A~~aL~~L~ 469 (534)
+++.|.+-|...++.+...|+.+|-.|+.+ +.++..+.+.- .|+.+.++-..++ ..||..|-+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 578888888899999999999999999964 77777776643 2333332222222 568999999888775
Q ss_pred CC
Q 009471 470 TL 471 (534)
Q Consensus 470 ~~ 471 (534)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 33
No 153
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.44 E-value=38 Score=31.13 Aligned_cols=131 Identities=8% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHcc-
Q 009471 213 REKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQT- 289 (534)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~- 289 (534)
+--++..++-+..+++.-+ .+..++ ..+.+.++..+-.++++++|+..++. .+..+..+.....+++.+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~~------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchHH------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 4446666666666654221 222222 23334577788899999999998888 45555433223444444322
Q ss_pred -------CChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhc----C----CChhHHHHHHHHHHHHccCCh
Q 009471 290 -------GDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDC----G----ILLGSKEYAAECLQNLTASNE 352 (534)
Q Consensus 290 -------~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~----~----~~~~v~~~a~~~L~~La~~~~ 352 (534)
.+..++..++..+.|++..- ..+. +......+++.+.. . .+.+..+.++-+|+++...++
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 24457778888889988621 0000 12233344444431 1 133788888889988886443
No 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=28.99 E-value=1.9e+02 Score=28.69 Aligned_cols=134 Identities=9% Similarity=0.033 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcCCchhHHHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCC-ChHHHHHHHcc-
Q 009471 213 REKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG-GVRPLIEICQT- 289 (534)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g-~i~~Lv~ll~~- 289 (534)
+-.++..++.+..++..-. .+..++ ..+.+.++..+-.+.++++|+..++...+.+..+. ....+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 5557788887777665322 122222 33345577888899999999998887544444332 23455555421
Q ss_pred -------CChHHHHHHHHHHHHccCCch-HHHHHHhhCcHHHHHHHhh-----c---CCChhHHHHHHHHHHHHccCChH
Q 009471 290 -------GDSVSQAAAACTLKNISAVPE-VRQMLAEEGIVSVMIKLLD-----C---GILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 290 -------~~~~~~~~a~~aL~nLa~~~~-~~~~i~e~g~i~~L~~ll~-----~---~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
.+..++.+++..+.|++..-. .+. +...+..+.+.+. . ..+.+..+.++.+|++|....+.
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 234577888888899886311 000 1223445555554 1 12337899999999999975554
Q ss_pred HH
Q 009471 354 LR 355 (534)
Q Consensus 354 ~~ 355 (534)
.+
T Consensus 394 ~~ 395 (425)
T 3pst_A 394 LR 395 (425)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 155
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.57 E-value=1.1e+02 Score=29.75 Aligned_cols=133 Identities=8% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCchhHHHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCC-ChHHHHHHHcc-
Q 009471 213 REKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG-GVRPLIEICQT- 289 (534)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g-~i~~Lv~ll~~- 289 (534)
+--++..++.+..++..-. .+..++ ..+.+.++..+-.+.++++|+..++...+.+..+. ....+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~~------~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 5557777777776665222 222232 23345577888899999999998887544444322 12344444321
Q ss_pred -------CChHHHHHHHHHHHHccCCch-HHHHHHhhCcHHHHHHHhh-----c---CCChhHHHHHHHHHHHHccCChH
Q 009471 290 -------GDSVSQAAAACTLKNISAVPE-VRQMLAEEGIVSVMIKLLD-----C---GILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 290 -------~~~~~~~~a~~aL~nLa~~~~-~~~~i~e~g~i~~L~~ll~-----~---~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
.+..++.+++..+.|++..-. .+. +...+..+.+.+. . ..+.+..+.++.+|++|....+.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 234577888888899886311 000 1223445555554 1 12337899999999999964444
Q ss_pred H
Q 009471 354 L 354 (534)
Q Consensus 354 ~ 354 (534)
.
T Consensus 331 ~ 331 (362)
T 3l3f_X 331 L 331 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=23.32 E-value=4.7e+02 Score=25.83 Aligned_cols=135 Identities=8% Similarity=0.045 Sum_probs=81.6
Q ss_pred HhhcC-CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHH-HHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhc-CchH
Q 009471 369 AYLDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLV-HVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEA-GCTP 444 (534)
Q Consensus 369 ~~L~~-~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv-~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~-g~v~ 444 (534)
+++.. | .+.+++..++.+.. +.... .+..++ ..+.+..+..+..++++++|+-.++.+.+.+... ....
T Consensus 235 kil~~WP-~~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~ 307 (425)
T 3pst_A 235 TIRSNWE-IKTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYK 307 (425)
T ss_dssp HHHHHCS-CCHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHH
T ss_pred HHHHhCC-cccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHH
Confidence 44444 4 57778999998887 33221 223333 2334557899999999999999988754444332 2244
Q ss_pred HHHHhhc--------CCChHHHHHHHHHHHHhcCCCcc-hHHHHhhCCCHHHHHhhcC-----C---CCchhHHHHHHHH
Q 009471 445 LLIKLLE--------AKPNSVREVAAQAISSLVTLPQN-CREVKRDDKSVPNLVQLLD-----P---SPQNTAKKYAVAC 507 (534)
Q Consensus 445 ~Lv~ll~--------~~~~~v~~~A~~aL~~L~~~~~~-~~~~~~~~~~v~~Lv~lL~-----~---~~~~~~k~~a~~~ 507 (534)
.+++.+. ..+..++..++-.+.|++..... +.. -..+..++..+. . ..+++....++.+
T Consensus 308 ~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVA 383 (425)
T 3pst_A 308 SIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVA 383 (425)
T ss_dssp HHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHH
Confidence 5555542 12467888888888898743111 110 122344555554 1 1244688889999
Q ss_pred HHhhchh
Q 009471 508 LASLSPS 514 (534)
Q Consensus 508 L~~L~~~ 514 (534)
|.+|...
T Consensus 384 LGtLv~~ 390 (425)
T 3pst_A 384 YGNLATV 390 (425)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998854
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.15 E-value=60 Score=27.23 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=53.6
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHH-HHHhhcC---CChHHHHHHHHHHHHhcCCC
Q 009471 401 FFPRLVHVLKA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPL-LIKLLEA---KPNSVREVAAQAISSLVTLP 472 (534)
Q Consensus 401 ~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~-Lv~ll~~---~~~~v~~~A~~aL~~L~~~~ 472 (534)
.+..|.+-|.. .++.++..|+..|-.+..+ ..+...+....++.. |++++.. .+..|+..+++.+...+..-
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 45666666764 5788888899888888854 777888877677764 7777763 34579999999999987543
No 158
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.68 E-value=5.6e+02 Score=24.89 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=50.6
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL 223 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~L 223 (534)
..+++.++..-...+.+.|...+.-|.+.+..+.+... ..++.|..+|+++++.+...++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44677888777777899999999999888876554422 3577888889888888888888777665
No 159
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=21.05 E-value=3.6e+02 Score=30.14 Aligned_cols=184 Identities=11% Similarity=-0.024 Sum_probs=99.9
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC----CCHHHHHHHHHHHH-----H
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA----TSPRIREKTVTVIC-----S 222 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~----~~~~v~~~A~~~L~-----~ 222 (534)
....+.+|+..--+.-.++|..|-.+|...+..-+..+..+ +|.+++.|+. .+.+-.+-|+.+|. .
T Consensus 131 ~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~ 205 (997)
T 1vsy_5 131 ENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR 205 (997)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh
Confidence 34567788876667788999999999999887655554443 5566665543 34444555555443 1
Q ss_pred hhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--------------------h-------------
Q 009471 223 LAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--------------------A------------- 268 (534)
Q Consensus 223 La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--------------------~------------- 268 (534)
....+ .+.. ..++.|++....+.+.++..+-.+...+... +
T Consensus 206 ~~~~d~~~~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~ 280 (997)
T 1vsy_5 206 KLMTDYKDIG-----RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKL 280 (997)
T ss_dssp HGGGCHHHHH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHH
T ss_pred HHhcChHHHH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 11111 1111 2355666655555555555444443332210 0
Q ss_pred ---hhHHHHHh--CCChHHHHHHH-ccCC--hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHH
Q 009471 269 ---EMARAIVG--HGGVRPLIEIC-QTGD--SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYA 340 (534)
Q Consensus 269 ---~~~~~l~~--~g~i~~Lv~ll-~~~~--~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a 340 (534)
..+....+ .+....|+.++ .+.+ +.....++..|.++....+. .....++..+++.+.++++ .++..|
T Consensus 281 ~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp-~~R~~a 356 (997)
T 1vsy_5 281 AKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHP-EIIHLV 356 (997)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCH-HHHHHH
Confidence 00000100 12233344555 2345 77777777776666542210 1123456778888888886 889988
Q ss_pred HHHHHHHcc
Q 009471 341 AECLQNLTA 349 (534)
Q Consensus 341 ~~~L~~La~ 349 (534)
..++..+..
T Consensus 357 ~~~l~~il~ 365 (997)
T 1vsy_5 357 VKSLLSTCN 365 (997)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHH
Confidence 888766554
Done!