BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009473
(534 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/544 (81%), Positives = 489/544 (89%), Gaps = 14/544 (2%)
Query: 1 MAISAFRGSRLPLLHPPQLPAVRGVPS------GLRKFNYRSKRFTLLAQYSQTQDLFSS 54
MA+SAFRG+RLPL H Q P R V G R F K F L AQYSQTQDLF+S
Sbjct: 1 MAVSAFRGTRLPLFHHSQFPVARTVSGTSKKMIGARNF----KGFVLTAQYSQTQDLFTS 56
Query: 55 RLQNSIENLPKLVEDIVQTSINTGPRGAIRLAQGIQAFVGVGSEWLTD---SRSSTSGLP 111
RLQ+ IE LPKLVEDIVQTSINTGPRG RL QG+QAFVGVG EWL D S S++ GLP
Sbjct: 57 RLQSQIEKLPKLVEDIVQTSINTGPRGVTRLVQGVQAFVGVGGEWLNDLSKSTSASGGLP 116
Query: 112 TELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGE 171
+ELQLGLLSPLYLR+LFERMGATYIKLGQFIAS+PTLFPPEYV+EFQNCFD+ P VPF E
Sbjct: 117 SELQLGLLSPLYLRKLFERMGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEE 176
Query: 172 IKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVA 231
I++ L E+LGRPIESVYEYVDPTPIASAS+AQVHGARLRGSQ+DVVIKVLKPGIED LVA
Sbjct: 177 IRKILQEELGRPIESVYEYVDPTPIASASIAQVHGARLRGSQEDVVIKVLKPGIEDFLVA 236
Query: 232 DLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGL 291
DLNF+YVV+RI EFL+PE SRTS+VGIVKDIRESMLEEVDF KEA NIESF+RYLE MGL
Sbjct: 237 DLNFIYVVSRIFEFLSPEFSRTSLVGIVKDIRESMLEEVDFNKEAQNIESFKRYLETMGL 296
Query: 292 TRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLAC 351
T QATAP+VY++CS+RRVLTMERLYGVPLTDLDSI SLVSSPENSLITALNVWFGSLLAC
Sbjct: 297 TGQATAPRVYKYCSSRRVLTMERLYGVPLTDLDSIRSLVSSPENSLITALNVWFGSLLAC 356
Query: 352 ETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
E+FHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAM++FLASIATEEYESMASALI+
Sbjct: 357 ESFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQ 416
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNAL 471
MGAT++D+D KAFA+DLEK+FSSIQELDTE+VVATARGT ++TTAV+AN+V+DERQMNAL
Sbjct: 417 MGATNRDVDGKAFAKDLEKMFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNAL 476
Query: 472 FLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRR-NRYR 530
FLDL+RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPN+NMLQDQRISI SN+R N Y+
Sbjct: 477 FLDLVRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNLNMLQDQRISIASNKRTNGYK 536
Query: 531 DSFK 534
DSF
Sbjct: 537 DSFN 540
>sp|P96936|Y647_MYCTU Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium
tuberculosis GN=Rv0647c PE=3 SV=1
Length = 488
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 207/398 (52%), Gaps = 26/398 (6%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
L + F +G TY+K GQ IASSP F EF+ DR P E+ + +E+LG
Sbjct: 96 LPQTFADLGPTYVKFGQIIASSPGAFGESLSREFRGLLDRVPPAKTDEVHKLFVEELGDE 155
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
++ + P ASAS+AQVH A LR S ++VV+K+ +PGI + ADL + A+ +
Sbjct: 156 PARLFASFEEEPFASASIAQVHYATLR-SGEEVVVKIQRPGIRRRVAADLQILKRFAQTV 214
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E L R S +V D +++ EE+DF+ EA ++E++ +L A L + P+V+
Sbjct: 215 E-LAKLGRRLSAQDVVADFADNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWD 273
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+T RVLTMER++G+ + + +I + L F L FH D+HAGNL
Sbjct: 274 FTTERVLTMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNL 333
Query: 364 WLLRDGRIGFLDFGIVGRISPKT-WAAMDLFLASIATEEYESMASALIEMGATDKDIDAK 422
++ GRI F DFGI+GRI P+T W +L A + +++ + ++ MGA
Sbjct: 334 YVDEAGRIVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKPET 393
Query: 423 AFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESY 482
A+DLE+ AT + A+I RQ++AL +++Y
Sbjct: 394 QAAKDLERF-------------ATPLTMQSLGDMSYADI---GRQLSAL-------ADAY 430
Query: 483 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRIS 520
+K PRE L+ KQ LY +RY +LLAP M+ D +++
Sbjct: 431 DVKLPRELVLIGKQFLYVERYMKLLAPRWQMMSDPQLT 468
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 199/400 (49%), Gaps = 38/400 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
+R FE +G +IK GQ +++ L PP+ EE DR P PF G+ R +E+ LG
Sbjct: 57 IRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVP--PFCGQAARLKIEESLG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
P+E++++ D TP+ASAS+AQVH RL+ + ++VIKV++P IE V+ ADL + +AR
Sbjct: 115 CPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLAR 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 301
++ P+ +R + +V++ R+++L+E++ +EAAN RR + P+V+
Sbjct: 175 LVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTG---SDALYVPEVF 231
Query: 302 -QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
+HC VL MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H
Sbjct: 232 TEHCR-EHVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGAT 415
GN+++ + IG +D GIVG ++ + + + +Y +A +E G
Sbjct: 291 GNIFVSYEHPDNPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWV 349
Query: 416 DKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDL 475
D F + + I E + E + L+L
Sbjct: 350 PPDTKVDEFEFAIRTVLEPIFEKP-----------------------LSEISFGHVLLNL 386
Query: 476 LRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ + + + LL K LLY + R L P +++ Q
Sbjct: 387 FNTARRFNMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 212/442 (47%), Gaps = 37/442 (8%)
Query: 82 AIRLAQGIQAFVGVGSE-WLTD-SRSSTSGLPTELQLGLLSPLYLRRLFERMGATYIKLG 139
+I L QGI V + W +R S L + Q GL +R FE +G +IK G
Sbjct: 14 SILLEQGIDELVPARYQPWPGRLARRSLFWLKNKRQ-GLNRGARIRLAFEALGPIFIKFG 72
Query: 140 QFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIASA 199
Q +++ L PP+ EE DR P +R + LG IE++++ D TP+ASA
Sbjct: 73 QMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDDFDETPLASA 132
Query: 200 SVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIV 259
S+AQVH ARL+ + ++VIKV++P IE V+ ADL + +AR++ P+ R + +V
Sbjct: 133 SIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQSGRLRPIEVV 192
Query: 260 KDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY-QHCSTRRVLTMERLYGV 318
++ R+++L+E++ +EAAN RR + P+V+ +HC +VL MER+YG+
Sbjct: 193 EEYRKTILDELNLMREAANAIQLRRNFTG---SEALYVPEVFTEHCRE-QVLVMERIYGI 248
Query: 319 PLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG-----RIGF 373
P++D+ ++ + ++ + + V+F + FHAD+H GN+++ + IG
Sbjct: 249 PVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLWIG- 307
Query: 374 LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFS 433
+D GIVG ++ + + + +Y +A +E G D F + +
Sbjct: 308 IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLE 367
Query: 434 SIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPREFALL 493
I E + E + L+L + + ++ + LL
Sbjct: 368 PIFEKP-----------------------LSEISFGHVLLNLFNTARRFNMQVQPQLVLL 404
Query: 494 LKQLLYFDRYTRLLAPNMNMLQ 515
K LLY + R L P +++ Q
Sbjct: 405 QKTLLYVEGLGRQLYPQLDLWQ 426
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 192/397 (48%), Gaps = 33/397 (8%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGR 182
LR FE +G +IK GQ +++ L PP+ EE DR P+ G++ R +E LG+
Sbjct: 57 LRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFD-GQLAREQIEQALGQ 115
Query: 183 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 242
PIE+++ D P+ASASVAQVH ARL+ + ++VIKV++P I+ V+ D+ + + A+I
Sbjct: 116 PIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKI 175
Query: 243 LEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQ 302
+ FL P +R V ++++ R ++L+E++ EAAN RR E + P VY
Sbjct: 176 VAFLIPN-NRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFEN---SSHLYVPLVYS 231
Query: 303 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 362
VL MER+YG+P++D ++ + + + + V+F + FHAD+H GN
Sbjct: 232 DYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGN 291
Query: 363 LWLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 418
+++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 292 VFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPD 351
Query: 419 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRV 478
+ F L + E + A + E + L+L
Sbjct: 352 TKVEEFESALRTVL--------EPIFAKP---------------LAEISFGQVLLNLFNT 388
Query: 479 SESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ + + + LL K LLY + R L P +++ Q
Sbjct: 389 ARRFNMHVQPQLVLLQKTLLYIEGLGRHLYPQLDLWQ 425
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 198/416 (47%), Gaps = 44/416 (10%)
Query: 104 RSSTSGLPTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDR 163
R +++ LP ++L L E +G ++K GQ +++ L PPEY +E DR
Sbjct: 42 RDTSAPLPQRVRLAL----------ESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDR 91
Query: 164 TPAVPF-GEIKRTLLE-DLGRPIESVYEYVDPTPIASASVAQVHGARLR----GSQDDVV 217
P PF G+I R ++E LGR +E ++ D P+ASASVAQVH A LR G +V
Sbjct: 92 VP--PFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVA 149
Query: 218 IKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAA 277
+KVL+PGI V+ DL+ + +A +E L + R +V + + + +E+D EAA
Sbjct: 150 VKVLRPGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAA 209
Query: 278 NIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSL 337
N RR + + P+V+ S+R VLT+E ++G+P+ ++ + +
Sbjct: 210 NASQLRRNFKGSDML---IVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLS 266
Query: 338 ITALNVWFGSLLACETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASI 397
+ ++F + FHAD+H GN+++ DGR LDFGIVG ++ + + +
Sbjct: 267 RFGVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAF 326
Query: 398 ATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAV 457
+Y +A+A IE G +D A+ + + I E + +
Sbjct: 327 FNRDYHRVATAHIESGWVPRDTRAEELEAAVRTVCEPIFE--------------KPLSEI 372
Query: 458 SANIVVDERQMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 513
S +V+ L L S + ++ + LL K LL + R L P +++
Sbjct: 373 SFGMVL---------LRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDL 419
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 199/421 (47%), Gaps = 33/421 (7%)
Query: 99 WLTDSRSSTSGLPTELQLGLL---SPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVE 155
WL + S +G TE +L ++R +G T+IK+GQ ++ LFP EYVE
Sbjct: 60 WLNGKKWSYAGGYTEEKLQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVE 119
Query: 156 EFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDD 215
E D PA + + + E+LG+PI +Y DP P+A+AS+ QVH A+L + +D
Sbjct: 120 ELSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQLH-TGED 178
Query: 216 VVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRT-SMVGIVKDIRESMLEEVDFKK 274
VV+KV +PG++ + DL + +A+ + +P+ R GI ++ + + +E D+ +
Sbjct: 179 VVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HPKWGRGRDWNGIYEECCKILWQETDYLR 237
Query: 275 EAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPE 334
E + ++FRR + P+VY ++ ++LT+E L G+ ++ D++ + +
Sbjct: 238 EGRSADTFRRNFRGEDWVK---VPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERK 294
Query: 335 NSLITALNVWFGSLLACETFHADVHAGNLWLLRD-GRIGFLDFGIVGRISPKTWAAMDLF 393
+ LL FHAD H GNL + + G + F DFG++G I+P T +
Sbjct: 295 ELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDT 354
Query: 394 LASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN 453
L +A + E + ++L+ +GA + D R ++ + + + E
Sbjct: 355 LFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDKPFE------------ 402
Query: 454 TTAVSANIVVDERQMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 513
E+ + + DL ++ +FP F +++ + + L P+ N
Sbjct: 403 -----------EQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNF 451
Query: 514 L 514
+
Sbjct: 452 M 452
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 204/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES+++ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 204/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES+++ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 188/396 (47%), Gaps = 35/396 (8%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR E +G +IK GQ +++ L PP+ +E D+ P P + + LG P
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
+ ++ D P+ASASVAQVH A+L+ S ++VV+KV++PG++ V+ DL +++++ARI
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLLARIA 177
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E + + R V +V D +++ +E+D +EAAN RR E L P+VY
Sbjct: 178 ERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 234
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+VL MER+YGVP+TDL +++ + + + ++F + FHAD+H GN+
Sbjct: 235 LCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 364 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
++ R + +D GI+G ++ + + L + +Y +A I+ G
Sbjct: 295 FV--STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 352
Query: 418 DIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLR 477
D F + + I E + + L L L +
Sbjct: 353 DTKVNEFEAAIRTVCEPIFEKPLKDI-----------------------SFGQLLLRLFQ 389
Query: 478 VSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 513
+ + ++ + LL K LL + R L P++++
Sbjct: 390 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/438 (24%), Positives = 210/438 (47%), Gaps = 52/438 (11%)
Query: 84 RLAQGIQAFVGVGSEWLTDSRSSTSGLPTELQLGLLSPLYLRRLFERMGATYIKLGQFIA 143
RL + ++ G ++ DS+ L SP LR+ FE +G T+IK+GQ ++
Sbjct: 5 RLKEIVKVLAYYGFGFIVDSK---------LNGNKKSPENLRKAFEELGPTFIKIGQILS 55
Query: 144 SSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIASASVAQ 203
+ P L P Y++E + P F +I+ E+L I++ + Y D TPI SAS+AQ
Sbjct: 56 TRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQ 115
Query: 204 VHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIR 263
VH A L+ + V++K+ +PGI +++ DL+ ++ ++L +++T + D +
Sbjct: 116 VHDAILKDGR-FVIVKIQRPGIAEMMKTDLS---IIKKLL-----NITKTKFTDALIDPK 166
Query: 264 ESMLE-------EVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLY 316
E++ E E+DF E NI+ F++ E + R P T +++ ME++
Sbjct: 167 EAIDELFISTTQELDFINEINNIKKFKKLNEDVKFVR---TPYTIDKLCTEKIIVMEKIV 223
Query: 317 GVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGRIGFLDF 376
G+ + +L + + E +F + FH D H GNL L+R+ I ++DF
Sbjct: 224 GIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNL-LIRENHICYIDF 282
Query: 377 GIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQ 436
GI+G IS +++ + ++A + M S ++ +G ++ + +E +F
Sbjct: 283 GIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFD--- 339
Query: 437 ELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPREFALLLKQ 496
N +VS + +++ + ++ ++S++ +K P+E +LLK
Sbjct: 340 ----------------NYISVSLKNI----KISVMLQEIFQISKNNNIKLPKELTMLLKS 379
Query: 497 LLYFDRYTRLLAPNMNML 514
L + ++P ++++
Sbjct: 380 TLMIEGVIARISPELSIV 397
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES+++ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES+++ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 EVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 EVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|A1RP80|UBIB_SHESW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain W3-18-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 203/405 (50%), Gaps = 42/405 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
IES+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A
Sbjct: 115 ASIESLFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTAN 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
+LE+ E +R +++D R ++L E++ K EA N R +L + L P V
Sbjct: 175 LLEYFLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQR 518
+L R + S+ + + LL K LLY + R L P +++ Q +
Sbjct: 385 ELFRTARSFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAK 429
>sp|A4Y2Q3|UBIB_SHEPC Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3
SV=1
Length = 549
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 203/405 (50%), Gaps = 42/405 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
IES+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A
Sbjct: 115 ASIESLFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTAN 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
+LE+ E +R +++D R ++L E++ K EA N R +L + L P V
Sbjct: 175 LLEYFLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQR 518
+L R + S+ + + LL K LLY + R L P +++ Q +
Sbjct: 385 ELFRTARSFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAK 429
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 180/393 (45%), Gaps = 28/393 (7%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR L +G ++IK GQ +A+ P + +Y+ E D P P + E+LG+P
Sbjct: 170 LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQP 229
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
+E+++ + IA+AS+ QV+ A LR + +DV IKV +P IE ++ DL +A L
Sbjct: 230 LENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFL 289
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
+ + + IV + E +LEE+D+ EA NIE F LE P VY++
Sbjct: 290 NGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDF---LENFKDDPTVKIPGVYKN 346
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
RVL ME + G+ TD +I L ++ LL FH D H GN+
Sbjct: 347 LCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNI 406
Query: 364 WLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 423
+ ++DGRI ++DFG V +S + + + E+Y MA+ +G KD D
Sbjct: 407 FAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSP 466
Query: 424 FARDLEKIFSSIQELDTELVVATARGTTT-NTTAVSANIVVDERQMNALFLDLLRVSESY 482
LE I+ + + +G N +V+ Q N L D +
Sbjct: 467 IVPALEAIWQN----------SAGKGLADFNFRSVTG-------QFNKLVYD-------F 502
Query: 483 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
++ P F+L+++ LL + L P+ L+
Sbjct: 503 PIRIPERFSLVIRSLLTQEGICFTLKPDFKFLE 535
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 EVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIETELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
I+++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 IIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES ++ D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 VIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ R+ IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISREHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIES ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 VIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 171/353 (48%), Gaps = 21/353 (5%)
Query: 102 DSRSSTSGLPTELQLG-LLSPLYL------------RRLFERMGATYIKLGQFIASSPTL 148
D+ S LPT L++ LL+P +L R E +G ++K GQ +++ L
Sbjct: 20 DTFLPLSELPTPLKIFFLLAPWHLFPQPKLSRGDRLRLALEELGPVFVKFGQILSTRRDL 79
Query: 149 FPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGAR 208
P + E + DR P P + + + + LG P+ ++ P P+ASASVAQVH A
Sbjct: 80 LPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAAT 139
Query: 209 LRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLE 268
L Q VV+KVL+PGIE V+ DL +Y++A +LE E R V +V D ++ +
Sbjct: 140 LPNGQ-KVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHD 198
Query: 269 EVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISS 328
E+D ++EAAN RR E L P + + + VL MER++G+P+ D+ ++
Sbjct: 199 ELDLQREAANASQLRRNFENSPLI---YIPFIDWDYTRKSVLVMERIHGIPIADVPALEK 255
Query: 329 LVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL----LRDGRIGFLDFGIVGRISP 384
+ + ++F + FHAD+H GN+++ D + +DFGIVG ++P
Sbjct: 256 AGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAP 315
Query: 385 KTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQE 437
+ + L + +Y +A I+ G + F + + I E
Sbjct: 316 DDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIFE 368
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 178/395 (45%), Gaps = 35/395 (8%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LRR+F R+G T++KLGQ +++ P L PP+Y+EE D P P E + +L
Sbjct: 150 LRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLS 209
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
+E+++ V P PIA+AS+ QV+ A+LR S V +KV +PGIE+ + D + V +++
Sbjct: 210 LETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLI 269
Query: 244 ----EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPK 299
+F+ T ++ ++ + + +E+++ +EA N RR+ + P
Sbjct: 270 NKYVDFIT-----TDVLTLIDEFACRVYQELNYVQEAQNA---RRFKKLYADKADVLVPD 321
Query: 300 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 359
++ ++R+VLTME + G L + +I S + + T + LL FHAD H
Sbjct: 322 IFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPH 381
Query: 360 AGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 419
GNL DG++ FLDFG++ + A+ + + +YE+MA + D+
Sbjct: 382 PGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDV 441
Query: 420 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 479
D L F + N V E L L V
Sbjct: 442 DVTPIIPALRDFFDD-----------------------ALNYTVSELNFKTLVDGLGAVF 478
Query: 480 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNML 514
Y P +AL+L+ L + PN +L
Sbjct: 479 YQYPFNVPPYYALILRSLTVLEGLALYADPNFKVL 513
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 12/320 (3%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLL--EDLG 181
LR + +G +IK GQ +++ L P + +E DR P PF + L E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVP--PFNPQQSVALIEEQLG 117
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
++ + D P+ASASVAQVH A+L+ + ++VV+KV++PG++ V+ DL ++Y+ AR
Sbjct: 118 ARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLFAR 176
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 301
+ E + E R +V +V D +++ +E+D +EAAN +R E L P++Y
Sbjct: 177 LAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLL---YVPQIY 233
Query: 302 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 361
+VL MER+YGVP+TDL ++ + + + ++F + FHAD+H G
Sbjct: 234 WDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPG 293
Query: 362 NLWLLR----DGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
N+++ D + +D GIVG ++P+ + L + +Y +A I+ G
Sbjct: 294 NIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPA 353
Query: 418 DIDAKAFARDLEKIFSSIQE 437
D F + + I E
Sbjct: 354 DTQVNEFEAAIRTVCEPIFE 373
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 187/395 (47%), Gaps = 32/395 (8%)
Query: 122 LYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLG 181
+ LR L +G TYIK+GQ +++ P L PP +++E D+ P+ P R + E+LG
Sbjct: 105 IQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELG 164
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
P E +Y + P PIA+AS+ QV+ +L+ + + V +KV +P + + D +Y++
Sbjct: 165 APAEEIYAELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLD---IYIMRS 220
Query: 242 ILEFLNPELS--RTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPK 299
+ + + R+ +V I ++ + EE+++ +EA N E F + G + P
Sbjct: 221 LSLWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFA---QLYGSLPEIYVPS 277
Query: 300 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 359
+Y + RRVLTME + G+ LT++ +I + + + + LL FHAD H
Sbjct: 278 IYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPH 337
Query: 360 AGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 419
GNL + DGR+ +LDFG++ I P + + + +++S+A +++ D
Sbjct: 338 PGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDT 397
Query: 420 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 479
D K L ++F G + N QM+A+ +
Sbjct: 398 DLKPIIPALGQVF----------------GNALGASVAELNFKSITDQMSAMMYE----- 436
Query: 480 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNML 514
+ + P +AL+++ ++ + + PN +L
Sbjct: 437 --FPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVL 469
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 193/418 (46%), Gaps = 40/418 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L P + EE DR PF G+ R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGQAARLIVEAALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNAL 471
G ++ I EL+ A AR N + E + +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYF----NRPLSEISLAQV 386
Query: 472 FLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 387 LIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARPVLERILRERY 444
>sp|A3QIE3|UBIB_SHELP Probable ubiquinone biosynthesis protein UbiB OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 197/400 (49%), Gaps = 38/400 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIK GQ +++ L E+ EE DR P PF I R +E +LG
Sbjct: 57 LKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVP--PFDSAIARAQIEAELG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIE+ ++ D TP+ASAS++QVH A L+ + ++VV+KVL+P +E+ + ADL + A+
Sbjct: 115 APIETYFDNFDDTPLASASISQVHTATLKSNGEEVVLKVLRPNVEEKVHADLLLMTQSAQ 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
+LE L +R +V+D R ++ E++ K EA N R ++++ L PK+
Sbjct: 175 VLETLLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSGAL----YIPKM 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YGVP++D ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCFTRLIVMERIYGVPVSDRAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGAT 415
GN+++ + IG LD GI+G ++ + + + +Y +A IE G
Sbjct: 291 GNIFVSTEHPEDPFYIG-LDCGIMGTLTEQDKRYLAENFLAFFNRDYTRIAQLYIESGWV 349
Query: 416 DKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDL 475
D D AF + ++ + + N +DE + L+L
Sbjct: 350 AADTDLVAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLEL 386
Query: 476 LRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
R + + + + LL K LLY + R L P +++ Q
Sbjct: 387 FRTARRFDMVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 200/425 (47%), Gaps = 39/425 (9%)
Query: 111 PTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFG 170
PTEL G LR + +G +IK GQ +++ L PP+ +E DR P PF
Sbjct: 51 PTELSRGA----RLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVP--PFD 104
Query: 171 EIKRTLL--EDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDV 228
K L E LG + V+ D P+ASASVAQVH ARL+ + ++VV+KV++PG++ V
Sbjct: 105 PKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPV 163
Query: 229 LVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEA 288
+ DL +++++A+ E + + R V IV D +++ +E+D +EAAN RR E
Sbjct: 164 IAQDLAWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFED 223
Query: 289 MGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSL 348
L P+VY +VL MER+YGVP+TD+ +++ + + + V+F +
Sbjct: 224 SELM---YVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQV 280
Query: 349 LACETFHADVHAGNLWL--LRDGRIGF--LDFGIVGRISPKTWAAMDLFLASIATEEYES 404
FHAD+H GN+++ ++ + +D GIVG ++ + + L + +Y
Sbjct: 281 FRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRR 340
Query: 405 MASALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVD 464
+A I+ G + F + + I E + +
Sbjct: 341 VAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFEKPLKDI--------------------- 379
Query: 465 ERQMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSN 524
+ + L + + + ++ + LL K LL + R L P++++ + +
Sbjct: 380 --SFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLERW 437
Query: 525 RRNRY 529
R+RY
Sbjct: 438 MRDRY 442
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 364 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 418 DIDAKAFARDLEKIFSSIQE 437
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 364 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 418 DIDAKAFARDLEKIFSSIQE 437
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 200/407 (49%), Gaps = 43/407 (10%)
Query: 122 LYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED- 179
L LR + +G +IKLGQ +++ LFPP+ +E D+ PF G+I R +E
Sbjct: 55 LRLRLALQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVD--PFDGKIARAQIEKA 112
Query: 180 LGRPIESVYEYVDPTPIASASVAQVHGARL---------RGSQDDVVIKVLKPGIEDVLV 230
LG P+E+ ++ + T +ASAS+AQVH A+ R + +VV+KVL+P I+ ++
Sbjct: 113 LGAPLETWFDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMIN 172
Query: 231 ADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMG 290
ADL+ +Y VA + + E R V +V++ +++ +E+D ++E AN R E
Sbjct: 173 ADLSLMYKVASWIPRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFENSP 232
Query: 291 LTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLA 350
+ P++Y+ + V+ MER+YG+P+++++ + + ++ + + V+F +
Sbjct: 233 ML---YIPEMYKQFCHQTVIVMERIYGIPVSNIEELHANGTNMKLLAERGVQVFFTQVFR 289
Query: 351 CETFHADVHAGNLWLLR----DGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMA 406
FHAD+H GN+++ R D + +D GIVGR++ + + +Y +A
Sbjct: 290 DSFFHADMHPGNIFVNRAHPDDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYRRVA 349
Query: 407 SALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDER 466
+ G T KD + D E+ F + E + A + E
Sbjct: 350 EMHVASGWTPKDTNID----DFEQAFREV----CEPIFAKP---------------LSEI 386
Query: 467 QMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 513
+ L+L V+ Y ++ + LL K LLY + R L P +++
Sbjct: 387 SFGHVLLNLFNVAREYNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDL 433
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 364 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 418 DIDAKAFARDLEKIFSSIQE 437
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 364 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 418 DIDAKAFARDLEKIFSSIQE 437
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q8E9R5|UBIB_SHEON Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
oneidensis (strain MR-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWATELAMLQDKVP--PFDGALARLAIEAELK 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
PIE+ ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIETFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAK 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 300
++++L E +R +++D R ++L E++ K EA N R ++++ L P V
Sbjct: 175 VIDYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFIDSDAL----YIPYV 230
Query: 301 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 360
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIVALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 361 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 413
GN+++ R+ IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRENPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|B8F6K1|UBIB_HAEPS Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1
Length = 549
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 194/402 (48%), Gaps = 38/402 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGR 182
LR + +G +IKLGQ +++ LF PE ++ D A G++ R L+E+ LG
Sbjct: 57 LRLALQELGPVWIKLGQMLSTRRDLFEPELADQLALLQDSVEAFD-GKLARRLIEEALGD 115
Query: 183 PIESVYEYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVYV 238
+E ++ D T +ASAS+AQVH A+ +Q +VV+KVL+P IE V+ DL +Y
Sbjct: 116 KLEKWFDDFDETALASASIAQVHIAKFNQNQPLAGKEVVLKVLRPEIERVIKDDLALMYR 175
Query: 239 VARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAP 298
+A + LN E R V +V++ +++L+E+D +KE N R E + P
Sbjct: 176 LASWIPRLNKEGRRLRPVEVVREYEKTLLDELDLRKEMVNAIRLRNNFEN---SEMLYVP 232
Query: 299 KVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADV 358
++YQ + V+ MER+YG+P+ ++D + + + + + V+F + FHAD+
Sbjct: 233 EMYQEFCHKNVIVMERIYGIPVANIDELKANGTDMKLLAERGVQVFFTQVFRDSFFHADM 292
Query: 359 HAGNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 413
H GN+++ + IG +D GIVG ++ + + +Y +A +E G
Sbjct: 293 HPGNIFVNPNHPENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESG 351
Query: 414 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 473
T D D AF E+ F + E + A + E + L
Sbjct: 352 WTPADTDIDAF----EEAFREV----CEPIFAKP---------------LSEISFGHVLL 388
Query: 474 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+L V+ + ++ + LL K LLY + R + P +++ Q
Sbjct: 389 NLFTVARKFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQ 430
>sp|Q3BZ34|UBIB_XANC5 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3
SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G ++K GQ +++ L P + EE DR PF G+ R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGQAARLIVEAALG 112
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 237
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPDIERQIDADIALLH 172
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 358 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 411
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 412 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 469
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 470 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 529
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q5E8V3|UBIB_VIBF1 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1
Length = 544
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 197/397 (49%), Gaps = 36/397 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
LR + +G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
P+++ + D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR
Sbjct: 115 GPLDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMAR 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 301
++E PE R V ++++ +++L+E+D ++EA+N RR E + + P+V
Sbjct: 175 LVEQHIPEARRLKPVKVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVI 231
Query: 302 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 361
S+ ++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H G
Sbjct: 232 LDLSSEHLMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 362 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATD 416
N+++ D IG LD GIVG ++ + + L +Y +A ++ G
Sbjct: 292 NVFVNPDNPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVP 350
Query: 417 KDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLL 476
D + + F + + E + A G E + L+L
Sbjct: 351 ADTNVEEFEFAIRMV--------CEPIFAKPLG---------------EISFGHVLLNLF 387
Query: 477 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 513
+ + ++ + LL K LLY + R L P +++
Sbjct: 388 NTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDL 424
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 194/398 (48%), Gaps = 34/398 (8%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
L+ + +G YIK GQ +++ L E+ +E DR PA + + +L P
Sbjct: 57 LKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAELKAP 116
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
I+S+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + VA +
Sbjct: 117 IDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVATWV 176
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQ 302
L E +R V +V+D + ++L E++ K EA N R +L++ L P VY+
Sbjct: 177 NRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDAL----YIPYVYE 232
Query: 303 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 362
R++ MER+ G+P++D++++++ ++ + + ++F + FHAD+H GN
Sbjct: 233 ELCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGN 292
Query: 363 LWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 417
+++ R+ IG LD GI+G ++ + + + +Y +A +E G
Sbjct: 293 IFISREHPENPFYIG-LDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESGWVSA 351
Query: 418 DIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLR 477
D D AF + ++ + + N ++E + L+L R
Sbjct: 352 DTDILAFEQAVKLVCEPM-----------------------FNKPLNEISFGHVLLELFR 388
Query: 478 VSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ + + + LL K LLY + R L P +++ Q
Sbjct: 389 TARRFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q7VN62|UBIB_HAEDU Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=ubiB PE=3 SV=1
Length = 542
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 197/405 (48%), Gaps = 44/405 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G +IKLGQ +A+ LF P ++ D PF G++ R ++E LG
Sbjct: 57 LRLALQELGPVWIKLGQMLATRRDLFEPALADQLALLQDSV--APFDGKLARKIIEQALG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVY 237
+E+ ++ D +ASAS+AQVH A +Q +VV+KV++P IE ++ AD+ +Y
Sbjct: 115 NTLETWFDDFDEQALASASIAQVHTATFNKNQPLAGQNVVLKVIRPDIEHIIKADIALMY 174
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A+++ +L+ + R +V++ +++L+E+D +E AN R E +
Sbjct: 175 QLAKLIPYLSDDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYV 231
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITA---LNVWFGSLLACETF 354
P +Y + V+ MER+YG+P++D I++L + N + A + V+F + F
Sbjct: 232 PAMYPDFCHKNVIVMERIYGIPVSD---IATLTENGTNMKLLAERGVQVFFTQVFRDSFF 288
Query: 355 HADVHAGNLWL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALI 410
HAD+HAGN+++ D + +D GIVG ++ + + +Y +A I
Sbjct: 289 HADMHAGNIFVNPNHPEDPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHI 348
Query: 411 EMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNA 470
E G T D D AF E+ F ++ E + A + E
Sbjct: 349 ESGWTPADTDVDAF----EEAFRTV----CEPIFAKP---------------LAEISFGQ 385
Query: 471 LFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ L+L V+ + ++ + LL K LLY + R + P +++ Q
Sbjct: 386 VLLNLFNVARQFNMEVQPQLVLLQKTLLYIEGLGRQVYPALDLWQ 430
>sp|B5FF80|UBIB_VIBFM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain MJ11) GN=ubiB PE=3 SV=1
Length = 544
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 197/397 (49%), Gaps = 36/397 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 181
LR + +G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
P+++ + D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR
Sbjct: 115 GPLDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMAR 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 301
++E PE R V ++++ +++L+E+D ++EA+N RR E + + P+V
Sbjct: 175 LVEQHIPEARRLKPVEVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVI 231
Query: 302 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 361
S+ ++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H G
Sbjct: 232 LDLSSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 362 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATD 416
N+++ D IG LD GIVG ++ + + L +Y +A ++ G
Sbjct: 292 NVFVNPDNPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVP 350
Query: 417 KDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLL 476
D + + F + + E + A G E + L+L
Sbjct: 351 ADTNVEEFEFAIRMV--------CEPIFAKPLG---------------EISFGHVLLNLF 387
Query: 477 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 513
+ + ++ + LL K LLY + R L P +++
Sbjct: 388 NTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDL 424
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 8/294 (2%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LRR E +G ++K GQ +++ L P + +E + D+ P R + E L P
Sbjct: 55 LRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSP 114
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
+ ++ P+ASAS+AQVH A L+ + +VV+KV++PGIE + D+ + +VAR++
Sbjct: 115 VSELFADFQTYPMASASIAQVHAATLKNGK-EVVVKVIRPGIEKTIRLDIALMLLVARLV 173
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E + R V +VKD ++++E+D ++EAAN +R L P+VY
Sbjct: 174 ENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELI---YIPEVYWE 230
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+ RVL MER+YGVP+ D++ + + + + ++F + FHAD+H GN+
Sbjct: 231 MTHSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 290
Query: 364 WL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 413
++ + R +D GIVG ++P+ + + L + +Y +A I G
Sbjct: 291 FVDVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAVLHISSG 344
>sp|A3N3S2|UBIB_ACTP2 Probable ubiquinone biosynthesis protein UbiB OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=ubiB PE=3
SV=1
Length = 544
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 197/407 (48%), Gaps = 48/407 (11%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G +IKLGQ +++ LF PE E+ D PF G+ R ++E LG
Sbjct: 57 LRLALQELGPVWIKLGQMLSTRRDLFEPELAEQLALLQDSVE--PFDGKSARQIIEQALG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVY 237
+E+ ++ D +ASAS+AQVH A+ +Q DVV+KV++P IE ++ AD+ +Y
Sbjct: 115 GSLETWFDEFDEQALASASIAQVHTAKFNQNQPLAGKDVVLKVIRPDIEPIIKADIALMY 174
Query: 238 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 297
+A + L+ + R +V++ +++L+E+D +E AN R E +
Sbjct: 175 RLASWIPRLSNDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYV 231
Query: 298 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 357
P++YQ + V+ MER+YG+P++D++++ + + + + V+F + FHAD
Sbjct: 232 PEMYQDFCHKNVIVMERIYGIPVSDVETLKANGTDMKLLAERGVQVFFTQVFRDSFFHAD 291
Query: 358 VHAGNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEM 412
+HAGN+++ + IG +D GIVG ++ + + +Y +A +E
Sbjct: 292 MHAGNIFVNPNHPENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVES 350
Query: 413 GAT--DKDIDA--KAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQM 468
G T D DIDA +AF E IF+ + E
Sbjct: 351 GWTPPDTDIDAFEQAFREVCEPIFAK---------------------------PLSEISF 383
Query: 469 NALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ L+L V+ + ++ + LL K LLY + R + P +++ Q
Sbjct: 384 GHVLLNLFNVAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQ 430
>sp|Q088I0|UBIB_SHEFN Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
frigidimarina (strain NCIMB 400) GN=ubiB PE=3 SV=1
Length = 549
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 196/399 (49%), Gaps = 36/399 (9%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
L+ + +G YIKLGQ +++ L E+ + DR P + + +LG P
Sbjct: 57 LKLAMQDLGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVPPFDSALAREAIEAELGAP 116
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
I + ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A +L
Sbjct: 117 IATYFDDFNDTPLASASISQVHTATLKSNGKAVVLKVLRPNVEQQILADLQLMTQTANLL 176
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
E L + +R +++D R ++L E++ K EA N R +G + P VY+
Sbjct: 177 ETLLGDGNRLRPAEVIEDYRTTILGELNLKLEALNAIKLRNNF--LG-SNSLYVPFVYEE 233
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
S +R++ MER+YG+P++D +++ + ++ + + ++F + FHAD+H GN+
Sbjct: 234 HSYQRLMVMERIYGIPVSDTEALRAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNI 293
Query: 364 WLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATD 416
++ R+ IG LD GI+G ++ K + A + FLA +Y +A IE G
Sbjct: 294 FISREHPDDPFYIG-LDCGIMGTLTEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVS 350
Query: 417 KDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLL 476
+ D AF + ++ + + N +DE + L+L
Sbjct: 351 EHTDIIAFEQAVKVVCEPM-----------------------FNKPLDEISFGHVLLELF 387
Query: 477 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
R + + + + LL K LLY + R L P +++ Q
Sbjct: 388 RTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 198/403 (49%), Gaps = 44/403 (10%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 181
LR + +G +IK GQ +++ LFPP + D+ PF GE+ + +E LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQV--APFDGELAKQQMEKALG 114
Query: 182 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 241
P+E+ + D P+ASAS+AQVH ARL+ + +VV+KV++P I V+ +DL ++ +AR
Sbjct: 115 GPLENWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMAR 174
Query: 242 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 301
I+ PE R V +V++ +++L+E+D ++EAAN RR E + + P+V+
Sbjct: 175 IVAGAMPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEG---SEELYVPEVF 231
Query: 302 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 361
S V+ ER+YG+ ++D++ + + ++ + ++V+F + FHAD+H G
Sbjct: 232 PDFSNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 362 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG--A 414
N+++ + IG LD GIVG ++ + + + +Y +A ++ G
Sbjct: 292 NVFVKPEHPENPMWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAELHVDSGWVP 350
Query: 415 TDKDIDAKAFARDL--EKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALF 472
D ++D FA + E IF+ + E +
Sbjct: 351 ADTNVDEFEFAIRIVCEPIFAK---------------------------PLCEISFGHVL 383
Query: 473 LDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
L+L + + ++ + LL K LLY + R L P +++ +
Sbjct: 384 LNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWE 426
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 188/396 (47%), Gaps = 30/396 (7%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 183
LR E++G +IK GQ +++ LFPP ++ D+ + K+ + LG P
Sbjct: 57 LRLALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSLGAP 116
Query: 184 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 243
+ES ++ D P+ASAS+AQVH A L+ + +VVIKV++P I V+ AD+ +Y +AR +
Sbjct: 117 VESQFDDFDIVPLASASIAQVHTATLKENGREVVIKVIRPDILPVIKADMKLIYRLARWV 176
Query: 244 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 303
L P+ R +V D +++L+E++ +EAAN RR A G + P++Y
Sbjct: 177 PRLLPDGRRLRPQEVVADYEKTLLDELNLLREAANAIQLRRNF-ADG--QMLYVPEIYSD 233
Query: 304 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 363
+ +L MER+YG+P++D+ ++ + + + V+F + FHAD+H GN+
Sbjct: 234 YCSENMLVMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPGNI 293
Query: 364 WLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 419
++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 FVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADT 353
Query: 420 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 479
+ + F + + I E + E + L+L +
Sbjct: 354 NVEDFEFAIRTVCEPIFEKP-----------------------LAEISFGHVLLNLFNTA 390
Query: 480 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ ++ + LL K LLY + R L P +++ +
Sbjct: 391 RRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWK 426
>sp|A4WFY3|UBIB_ENT38 Probable ubiquinone biosynthesis protein UbiB OS=Enterobacter sp.
(strain 638) GN=ubiB PE=3 SV=1
Length = 546
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 193/397 (48%), Gaps = 31/397 (7%)
Query: 124 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGR- 182
LR + +G +IK GQ +++ LFPP+ ++ DR K+ + E +G
Sbjct: 57 LRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDRVAPFDGARAKQQIEEAMGNI 116
Query: 183 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 242
P+E+ ++ D P+ASAS+AQVH ARL+ + ++VIKV++P I V+ AD+ +Y +AR
Sbjct: 117 PVETWFDDFDIKPLASASIAQVHTARLKENGKEIVIKVIRPDILPVIRADMKLIYRLARW 176
Query: 243 LEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQ 302
+ L P+ R + +V++ +++++E++ +E+AN RR E + P+VY
Sbjct: 177 VPRLLPDGRRLRPMEVVREYEKTLIDELNLLRESANAIQLRRNFENSPML---YVPEVYS 233
Query: 303 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 362
++ ++ MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H GN
Sbjct: 234 DYCSQNMMVMERIYGIPVSDIVALENQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 293
Query: 363 LWL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 418
+++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 IFVSYEHPEDPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPD 353
Query: 419 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRV 478
+ + F + + I E + E + L+L
Sbjct: 354 TNVEEFEFAIRTVCEPIFEKP-----------------------LSEISFGHVLLNLFNT 390
Query: 479 SESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 515
+ + ++ + LL K LLY + R L P +++ +
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWK 427
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,747,401
Number of Sequences: 539616
Number of extensions: 7592279
Number of successful extensions: 23118
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 22436
Number of HSP's gapped (non-prelim): 243
length of query: 534
length of database: 191,569,459
effective HSP length: 122
effective length of query: 412
effective length of database: 125,736,307
effective search space: 51803358484
effective search space used: 51803358484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)