Query 009474
Match_columns 534
No_of_seqs 320 out of 1634
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 13:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 4E-107 9E-112 870.1 46.7 404 114-526 82-485 (485)
2 COG0276 HemH Protoheme ferro-l 100.0 6.9E-91 1.5E-95 711.4 37.3 318 118-446 2-319 (320)
3 KOG1321 Protoheme ferro-lyase 100.0 1E-90 2.3E-95 694.2 31.2 355 118-506 35-394 (395)
4 PF00762 Ferrochelatase: Ferro 100.0 1.2E-89 2.7E-94 708.2 32.2 316 121-445 1-316 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 1E-86 2.3E-91 688.2 37.9 320 118-445 2-321 (322)
6 PRK12435 ferrochelatase; Provi 100.0 2.3E-82 4.9E-87 652.6 37.1 302 119-447 2-309 (311)
7 PRK00035 hemH ferrochelatase; 100.0 3E-80 6.6E-85 641.6 39.8 324 119-449 3-327 (333)
8 cd03411 Ferrochelatase_N Ferro 100.0 5.7E-42 1.2E-46 321.5 17.6 159 122-285 1-159 (159)
9 cd00419 Ferrochelatase_C Ferro 100.0 7.6E-38 1.6E-42 286.7 15.9 135 290-428 1-135 (135)
10 PF06180 CbiK: Cobalt chelatas 99.9 7.6E-21 1.7E-25 191.9 14.9 242 122-445 1-261 (262)
11 COG4822 CbiK Cobalamin biosynt 99.8 7E-18 1.5E-22 163.1 20.9 241 121-447 2-259 (265)
12 PRK02395 hypothetical protein; 99.7 3.5E-15 7.6E-20 152.2 24.2 234 185-447 8-262 (279)
13 PHA02337 putative high light i 99.4 3.1E-13 6.6E-18 95.3 3.4 33 493-525 1-33 (35)
14 cd03409 Chelatase_Class_II Cla 99.3 4.1E-11 8.9E-16 102.9 10.6 87 311-414 2-88 (101)
15 cd03409 Chelatase_Class_II Cla 99.2 3.2E-10 6.9E-15 97.4 11.5 74 188-266 13-88 (101)
16 COG2138 Sirohydrochlorin ferro 99.1 7.5E-09 1.6E-13 104.2 18.9 231 185-446 9-241 (245)
17 PLN02757 sirohydrochlorine fer 99.0 1.1E-08 2.4E-13 96.2 15.3 122 307-447 12-134 (154)
18 PLN00014 light-harvesting-like 98.9 9.1E-10 2E-14 107.8 3.7 41 490-531 156-196 (250)
19 cd03414 CbiX_SirB_C Sirohydroc 98.9 7.5E-08 1.6E-12 85.4 14.3 115 310-445 2-117 (117)
20 PRK00923 sirohydrochlorin coba 98.8 2.4E-08 5.1E-13 90.1 10.2 109 185-298 8-125 (126)
21 PRK00923 sirohydrochlorin coba 98.8 6.5E-08 1.4E-12 87.2 12.5 116 310-444 3-126 (126)
22 cd03412 CbiK_N Anaerobic cobal 98.8 8.7E-08 1.9E-12 87.2 13.0 120 122-298 1-125 (127)
23 PLN02757 sirohydrochlorine fer 98.8 1.6E-07 3.5E-12 88.4 14.2 114 185-303 20-135 (154)
24 PLN00084 photosystem II subuni 98.8 4.4E-09 9.4E-14 98.7 3.2 44 474-529 127-171 (214)
25 cd03414 CbiX_SirB_C Sirohydroc 98.7 1.8E-07 3.8E-12 83.0 12.7 109 185-299 7-116 (117)
26 cd03415 CbiX_CbiC Archaeal sir 98.7 2.4E-07 5.3E-12 84.4 12.7 108 185-298 7-124 (125)
27 cd03415 CbiX_CbiC Archaeal sir 98.6 7.2E-07 1.6E-11 81.3 12.9 114 310-443 2-124 (125)
28 PF01903 CbiX: CbiX; InterPro 98.4 4.6E-07 9.9E-12 78.7 5.8 91 199-294 13-105 (105)
29 PRK05782 bifunctional sirohydr 98.3 5.9E-06 1.3E-10 86.8 12.8 114 184-303 12-135 (335)
30 cd03413 CbiK_C Anaerobic cobal 98.2 6E-06 1.3E-10 72.8 9.3 96 310-427 2-102 (103)
31 PRK05782 bifunctional sirohydr 98.2 1.5E-05 3.3E-10 83.8 13.7 120 309-448 7-135 (335)
32 cd03412 CbiK_N Anaerobic cobal 98.2 3.9E-05 8.5E-10 69.9 13.8 119 310-444 2-126 (127)
33 cd03416 CbiX_SirB_N Sirohydroc 98.2 2.2E-05 4.8E-10 67.8 11.6 99 311-428 2-101 (101)
34 PF01903 CbiX: CbiX; InterPro 98.2 4.3E-06 9.3E-11 72.6 6.6 97 330-439 8-105 (105)
35 cd03416 CbiX_SirB_N Sirohydroc 97.9 5.6E-05 1.2E-09 65.3 9.4 90 187-282 8-100 (101)
36 COG0276 HemH Protoheme ferro-l 97.7 0.00031 6.8E-09 73.4 12.2 147 335-495 76-233 (320)
37 PRK00035 hemH ferrochelatase; 97.7 0.00052 1.1E-08 71.9 12.9 108 187-301 207-324 (333)
38 TIGR00109 hemH ferrochelatase. 97.6 0.001 2.2E-08 69.8 13.3 105 186-300 205-321 (322)
39 PLN02449 ferrochelatase 97.5 0.001 2.2E-08 73.2 13.2 112 186-302 294-415 (485)
40 COG2138 Sirohydrochlorin ferro 97.5 0.00053 1.1E-08 69.4 9.6 119 310-449 4-122 (245)
41 PRK02395 hypothetical protein; 97.5 0.0012 2.7E-08 67.7 12.1 113 185-304 142-264 (279)
42 PRK12435 ferrochelatase; Provi 97.4 0.0014 3E-08 68.5 12.2 111 328-448 53-167 (311)
43 cd03413 CbiK_C Anaerobic cobal 97.2 0.0011 2.5E-08 58.3 7.4 60 184-246 6-65 (103)
44 PF00504 Chloroa_b-bind: Chlor 97.2 0.00016 3.5E-09 67.8 2.1 28 489-516 128-155 (156)
45 PF00504 Chloroa_b-bind: Chlor 97.2 0.00011 2.3E-09 68.9 0.7 34 490-523 25-58 (156)
46 PF00762 Ferrochelatase: Ferro 96.9 0.0066 1.4E-07 63.6 11.3 114 326-449 63-179 (316)
47 PLN00147 light-harvesting comp 96.7 0.0012 2.7E-08 66.9 3.4 33 496-528 202-234 (252)
48 PLN00100 light-harvesting comp 96.6 0.0011 2.5E-08 66.8 2.6 34 496-529 162-195 (246)
49 PLN00089 fucoxanthin-chlorophy 96.6 0.0016 3.6E-08 64.4 3.2 30 496-525 179-208 (209)
50 PLN00099 light-harvesting comp 96.2 0.0032 6.9E-08 63.7 3.1 33 496-528 188-221 (243)
51 PLN00025 photosystem II light 96.2 0.003 6.5E-08 64.4 2.9 34 495-528 207-240 (262)
52 PLN00048 photosystem I light h 96.2 0.0028 6.1E-08 64.7 2.5 32 495-526 86-117 (262)
53 PLN00101 Photosystem I light-h 96.0 0.003 6.5E-08 64.0 1.7 34 495-528 201-234 (250)
54 PLN00048 photosystem I light h 96.0 0.0042 9.2E-08 63.4 2.7 33 495-527 211-243 (262)
55 PLN00120 fucoxanthin-chlorophy 96.0 0.0057 1.2E-07 60.3 3.5 26 496-521 170-195 (202)
56 cd00419 Ferrochelatase_C Ferro 96.0 0.077 1.7E-06 49.0 10.7 58 187-246 36-101 (135)
57 PLN00097 photosystem I light h 95.9 0.0048 1E-07 62.3 2.8 34 495-528 198-231 (244)
58 PLN00098 light-harvesting comp 95.9 0.0057 1.2E-07 62.6 3.2 34 495-528 216-249 (267)
59 PLN00171 photosystem light-ha 95.9 0.0058 1.3E-07 63.9 3.2 33 496-528 275-307 (324)
60 PLN00187 photosystem II light- 95.8 0.0066 1.4E-07 62.6 3.2 34 495-528 236-269 (286)
61 PF06180 CbiK: Cobalt chelatas 95.8 0.027 5.8E-07 57.7 7.5 105 185-301 148-262 (262)
62 PLN00101 Photosystem I light-h 95.8 0.0058 1.3E-07 62.0 2.6 30 495-524 92-121 (250)
63 KOG1321 Protoheme ferro-lyase 95.5 0.1 2.3E-06 54.5 10.5 179 234-451 35-223 (395)
64 PLN00098 light-harvesting comp 95.1 0.014 3.1E-07 59.7 2.8 32 494-525 100-131 (267)
65 PLN00097 photosystem I light h 94.6 0.015 3.2E-07 58.9 1.4 31 494-524 82-112 (244)
66 PLN00170 photosystem II light- 94.4 0.018 3.9E-07 58.6 1.5 33 493-525 94-126 (255)
67 PLN00025 photosystem II light 94.4 0.015 3.3E-07 59.4 1.0 31 493-523 90-120 (262)
68 PLN00187 photosystem II light- 94.4 0.018 4E-07 59.4 1.5 29 493-521 132-160 (286)
69 PLN00147 light-harvesting comp 94.0 0.035 7.5E-07 56.5 2.7 29 495-523 84-112 (252)
70 PLN00171 photosystem light-ha 93.8 0.039 8.6E-07 57.8 2.7 31 494-524 148-178 (324)
71 PLN00170 photosystem II light- 93.5 0.037 8E-07 56.4 1.7 35 494-529 221-255 (255)
72 cd03411 Ferrochelatase_N Ferro 92.0 1.1 2.5E-05 42.1 9.6 54 333-393 69-122 (159)
73 PLN00100 light-harvesting comp 91.4 0.12 2.7E-06 52.4 2.3 25 495-519 74-98 (246)
74 COG4822 CbiK Cobalamin biosynt 91.0 2.5 5.4E-05 42.4 10.9 103 187-302 148-259 (265)
75 PLN00099 light-harvesting comp 90.3 0.12 2.5E-06 52.5 1.1 27 493-519 81-107 (243)
76 PLN00089 fucoxanthin-chlorophy 90.1 0.22 4.8E-06 49.5 2.8 30 493-522 74-103 (209)
77 PRK10481 hypothetical protein; 86.0 11 0.00024 38.0 11.9 135 213-404 67-203 (224)
78 COG1453 Predicted oxidoreducta 82.8 34 0.00074 37.1 14.3 212 193-437 31-262 (391)
79 cd01994 Alpha_ANH_like_IV This 78.7 68 0.0015 31.3 14.1 124 231-389 18-143 (194)
80 PLN00120 fucoxanthin-chlorophy 73.8 0.61 1.3E-05 46.1 -1.6 25 493-517 63-87 (202)
81 PF05990 DUF900: Alpha/beta hy 73.6 44 0.00095 33.4 11.5 134 291-440 3-149 (233)
82 COG2861 Uncharacterized protei 71.5 94 0.002 31.9 13.1 87 211-297 52-148 (250)
83 PF04748 Polysacc_deac_2: Dive 70.9 1.2E+02 0.0025 30.3 14.0 89 210-298 19-117 (213)
84 PF06309 Torsin: Torsin; Inte 70.8 12 0.00026 34.5 6.2 66 282-360 27-92 (127)
85 COG0621 MiaB 2-methylthioadeni 67.6 44 0.00096 37.0 10.7 136 227-393 180-335 (437)
86 TIGR00290 MJ0570_dom MJ0570-re 67.2 1.5E+02 0.0031 30.0 13.8 119 232-389 20-140 (223)
87 cd01017 AdcA Metal binding pro 64.1 1.3E+02 0.0029 30.6 13.0 123 280-428 113-253 (282)
88 TIGR00640 acid_CoA_mut_C methy 60.7 73 0.0016 29.3 9.3 105 122-241 3-110 (132)
89 PRK09545 znuA high-affinity zi 59.8 1.7E+02 0.0037 30.6 13.0 136 280-441 145-303 (311)
90 PF01297 TroA: Periplasmic sol 58.2 1.4E+02 0.003 29.8 11.7 195 186-441 29-249 (256)
91 TIGR00262 trpA tryptophan synt 57.8 2.2E+02 0.0048 29.0 16.3 138 210-390 86-227 (256)
92 PF04273 DUF442: Putative phos 56.9 47 0.001 29.7 7.1 66 372-443 16-84 (110)
93 KOG0460 Mitochondrial translat 53.8 28 0.00061 37.6 5.9 50 370-419 156-206 (449)
94 cd01018 ZntC Metal binding pro 53.5 2.5E+02 0.0055 28.3 13.3 136 279-442 111-262 (266)
95 COG0406 phoE Broad specificity 52.4 2E+02 0.0044 27.4 11.4 53 187-244 26-81 (208)
96 cd01020 TroA_b Metal binding p 49.1 1.6E+02 0.0035 29.8 10.6 139 280-440 95-255 (264)
97 PF01902 ATP_bind_4: ATP-bindi 46.4 1.7E+02 0.0037 29.3 10.0 50 326-389 91-140 (218)
98 PRK05628 coproporphyrinogen II 46.3 3.9E+02 0.0085 28.4 17.1 141 285-441 35-184 (375)
99 PRK09856 fructoselysine 3-epim 46.1 3.2E+02 0.0068 27.3 16.1 155 219-387 9-176 (275)
100 PRK14464 ribosomal RNA large s 45.1 3.6E+02 0.0078 29.0 12.7 52 386-443 213-269 (344)
101 PRK07239 bifunctional uroporph 44.9 4.1E+02 0.0089 28.3 15.6 47 197-243 21-71 (381)
102 PRK10076 pyruvate formate lyas 40.3 1.5E+02 0.0032 29.5 8.5 35 409-443 119-156 (213)
103 PRK03906 mannonate dehydratase 37.6 48 0.001 36.1 4.9 67 365-433 5-71 (385)
104 PF08645 PNK3P: Polynucleotide 37.5 80 0.0017 29.7 5.8 63 366-428 28-92 (159)
105 cd03174 DRE_TIM_metallolyase D 36.9 4.2E+02 0.0092 26.1 13.1 145 226-399 77-233 (265)
106 COG4750 LicC CTP:phosphocholin 36.7 39 0.00084 33.8 3.6 47 185-246 9-55 (231)
107 COG0761 lytB 4-Hydroxy-3-methy 36.1 92 0.002 32.7 6.3 37 307-343 66-112 (294)
108 TIGR00539 hemN_rel putative ox 35.9 5.5E+02 0.012 27.2 17.0 137 285-438 29-174 (360)
109 PF13380 CoA_binding_2: CoA bi 34.5 54 0.0012 29.2 3.9 39 370-419 66-104 (116)
110 cd02167 NMNAT_NadR Nicotinamid 34.0 4E+02 0.0088 25.0 10.0 86 227-317 17-109 (158)
111 TIGR03822 AblA_like_2 lysine-2 33.4 5.9E+02 0.013 26.7 13.9 108 325-443 143-256 (321)
112 COG0635 HemN Coproporphyrinoge 33.1 6.9E+02 0.015 27.4 13.6 140 285-442 64-215 (416)
113 PRK09426 methylmalonyl-CoA mut 32.8 2E+02 0.0044 33.9 9.2 108 120-241 581-690 (714)
114 PLN02591 tryptophan synthase 32.7 2.2E+02 0.0048 29.1 8.5 64 368-441 91-154 (250)
115 TIGR00262 trpA tryptophan synt 32.7 4.1E+02 0.0088 27.1 10.5 61 371-441 103-163 (256)
116 PRK04147 N-acetylneuraminate l 32.5 2.3E+02 0.005 29.1 8.8 53 211-267 73-128 (293)
117 PRK13111 trpA tryptophan synth 32.2 4.9E+02 0.011 26.6 11.0 35 210-245 88-126 (258)
118 PTZ00398 phosphoenolpyruvate c 31.9 1E+02 0.0022 37.7 6.7 80 352-441 690-771 (974)
119 cd00951 KDGDH 5-dehydro-4-deox 31.7 1.5E+02 0.0033 30.5 7.3 66 371-439 79-148 (289)
120 TIGR03470 HpnH hopanoid biosyn 31.6 2.8E+02 0.0061 29.0 9.4 47 203-249 156-204 (318)
121 cd01016 TroA Metal binding pro 31.4 3.3E+02 0.0072 27.8 9.7 55 280-346 101-155 (276)
122 TIGR02990 ectoine_eutA ectoine 30.3 86 0.0019 31.8 5.1 56 365-430 102-157 (239)
123 TIGR00289 conserved hypothetic 30.1 5.8E+02 0.013 25.6 13.7 49 327-390 92-140 (222)
124 COG1350 Predicted alternative 30.0 1.7E+02 0.0036 31.7 7.1 62 176-245 67-135 (432)
125 PF08029 HisG_C: HisG, C-termi 29.6 49 0.0011 27.7 2.6 24 222-245 49-72 (75)
126 COG2896 MoaA Molybdenum cofact 29.5 4.1E+02 0.0088 28.4 10.0 102 330-443 44-178 (322)
127 PRK13125 trpA tryptophan synth 29.2 4.4E+02 0.0096 26.4 10.0 136 279-440 11-151 (244)
128 PRK12677 xylose isomerase; Pro 29.1 2.7E+02 0.0058 30.2 8.9 66 354-420 13-83 (384)
129 PF02645 DegV: Uncharacterised 28.9 2.3E+02 0.005 28.9 8.0 60 221-288 61-123 (280)
130 PRK05660 HemN family oxidoredu 28.9 7.5E+02 0.016 26.5 16.7 130 286-432 37-174 (378)
131 TIGR01019 sucCoAalpha succinyl 28.7 1E+02 0.0022 32.2 5.4 44 369-419 73-116 (286)
132 cd06335 PBP1_ABC_ligand_bindin 28.6 2.6E+02 0.0056 28.8 8.4 48 195-242 152-199 (347)
133 PF08915 tRNA-Thr_ED: Archaea- 28.5 1.8E+02 0.0039 27.3 6.4 47 378-425 66-115 (138)
134 TIGR00695 uxuA mannonate dehyd 28.5 85 0.0019 34.3 4.9 66 366-433 6-71 (394)
135 PF00701 DHDPS: Dihydrodipicol 28.0 3.9E+02 0.0084 27.2 9.5 53 210-266 69-124 (289)
136 PF07799 DUF1643: Protein of u 28.0 3.4E+02 0.0073 24.5 8.1 31 222-252 31-61 (136)
137 cd00408 DHDPS-like Dihydrodipi 27.8 5.9E+02 0.013 25.6 10.7 68 369-439 75-149 (281)
138 PRK13111 trpA tryptophan synth 27.6 3.8E+02 0.0082 27.5 9.2 64 369-442 103-166 (258)
139 cd00408 DHDPS-like Dihydrodipi 27.5 3E+02 0.0066 27.8 8.6 52 211-266 66-120 (281)
140 TIGR03821 AblA_like_1 lysine-2 27.5 2.4E+02 0.0051 29.8 7.9 67 373-443 193-262 (321)
141 PRK03620 5-dehydro-4-deoxygluc 27.3 2.9E+02 0.0064 28.6 8.5 52 210-266 75-129 (303)
142 PRK04147 N-acetylneuraminate l 27.2 1.9E+02 0.0041 29.8 7.0 68 369-439 82-156 (293)
143 PF10087 DUF2325: Uncharacteri 26.9 4E+02 0.0086 22.7 8.3 46 385-438 49-94 (97)
144 PF03358 FMN_red: NADPH-depend 26.2 2.6E+02 0.0057 25.1 7.1 75 187-265 8-97 (152)
145 cd07948 DRE_TIM_HCS Saccharomy 26.0 7.2E+02 0.016 25.4 13.7 144 222-394 71-220 (262)
146 KOG4132 Uroporphyrinogen III s 26.0 7.4E+02 0.016 25.5 10.7 192 201-445 46-255 (260)
147 TIGR02717 AcCoA-syn-alpha acet 26.0 1.4E+02 0.003 32.9 6.1 49 370-419 75-123 (447)
148 PF13684 Dak1_2: Dihydroxyacet 25.7 1E+02 0.0022 32.5 4.8 44 201-245 108-151 (313)
149 cd07910 MiaE MiaE tRNA-modifyi 25.7 16 0.00034 35.7 -1.1 58 276-338 38-95 (180)
150 PRK07945 hypothetical protein; 25.7 4.1E+02 0.0088 28.2 9.3 44 198-244 89-132 (335)
151 TIGR03249 KdgD 5-dehydro-4-deo 25.6 2.3E+02 0.0049 29.3 7.3 66 371-439 84-153 (296)
152 cd06595 GH31_xylosidase_XylS-l 25.4 6.5E+02 0.014 25.9 10.7 103 194-303 23-148 (292)
153 TIGR02631 xylA_Arthro xylose i 25.0 3.9E+02 0.0084 29.0 9.2 62 354-420 14-84 (382)
154 PRK05367 glycine dehydrogenase 25.0 62 0.0013 39.3 3.4 61 454-518 493-555 (954)
155 TIGR00538 hemN oxygen-independ 25.0 9.4E+02 0.02 26.4 16.8 48 372-419 150-202 (455)
156 PF07629 DUF1590: Protein of u 24.4 46 0.001 23.1 1.3 20 9-28 4-23 (32)
157 cd02072 Glm_B12_BD B12 binding 24.3 1.4E+02 0.0031 27.5 4.9 56 186-241 55-113 (128)
158 PRK05678 succinyl-CoA syntheta 24.1 1.3E+02 0.0029 31.4 5.3 44 369-419 75-118 (291)
159 PF10673 DUF2487: Protein of u 24.0 1.7E+02 0.0038 27.5 5.5 51 192-245 35-93 (142)
160 KOG2040 Glycine dehydrogenase 23.7 7.2E+02 0.016 29.5 11.0 96 276-383 600-710 (1001)
161 cd06343 PBP1_ABC_ligand_bindin 23.6 2.4E+02 0.0052 29.0 7.1 51 192-242 155-205 (362)
162 TIGR01856 hisJ_fam histidinol 23.6 3.1E+02 0.0067 27.5 7.7 24 220-243 12-35 (253)
163 COG4558 ChuT ABC-type hemin tr 23.5 8.5E+02 0.018 25.8 10.8 113 227-380 113-232 (300)
164 PRK10510 putative outer membra 23.4 4.8E+02 0.01 26.0 8.9 108 189-318 76-193 (219)
165 cd06660 Aldo_ket_red Aldo-keto 23.3 7.4E+02 0.016 24.6 12.8 50 331-384 92-141 (285)
166 smart00729 Elp3 Elongator prot 23.1 2.9E+02 0.0063 25.3 7.0 44 204-248 144-192 (216)
167 PLN02414 glycine dehydrogenase 23.0 86 0.0019 38.3 4.0 58 454-518 519-581 (993)
168 COG4782 Uncharacterized protei 23.0 4.3E+02 0.0094 28.8 8.8 141 279-439 93-245 (377)
169 PF07302 AroM: AroM protein; 22.6 8.1E+02 0.018 24.8 11.4 83 136-245 13-96 (221)
170 cd00954 NAL N-Acetylneuraminic 22.4 2.9E+02 0.0063 28.3 7.3 67 370-439 80-154 (288)
171 COG3473 Maleate cis-trans isom 22.4 1.9E+02 0.004 29.4 5.5 53 369-431 104-156 (238)
172 cd00952 CHBPH_aldolase Trans-o 22.1 2.1E+02 0.0046 29.8 6.3 66 370-438 87-160 (309)
173 TIGR00674 dapA dihydrodipicoli 21.9 4.7E+02 0.01 26.7 8.8 70 194-267 50-122 (285)
174 cd06595 GH31_xylosidase_XylS-l 21.5 5.7E+02 0.012 26.4 9.3 69 370-446 74-146 (292)
175 TIGR00683 nanA N-acetylneurami 21.3 4.7E+02 0.01 26.9 8.7 69 195-267 54-125 (290)
176 TIGR03249 KdgD 5-dehydro-4-deo 21.2 4.7E+02 0.01 27.0 8.6 51 211-266 74-127 (296)
177 TIGR02313 HpaI-NOT-DapA 2,4-di 20.9 4.9E+02 0.011 26.9 8.7 53 211-267 69-124 (294)
178 PRK13505 formate--tetrahydrofo 20.9 1.1E+03 0.024 27.2 11.9 30 369-398 465-498 (557)
179 cd00860 ThrRS_anticodon ThrRS 20.8 2.9E+02 0.0063 22.3 5.8 49 193-245 12-60 (91)
180 KOG2170 ATPase of the AAA+ sup 20.5 1.9E+02 0.0041 31.0 5.4 51 282-345 84-134 (344)
181 PRK03620 5-dehydro-4-deoxygluc 20.5 3.3E+02 0.0072 28.2 7.4 65 371-438 86-154 (303)
182 PF13407 Peripla_BP_4: Peripla 20.5 2.3E+02 0.0049 27.4 5.9 59 326-394 8-66 (257)
183 TIGR00238 KamA family protein. 20.4 3.1E+02 0.0067 29.0 7.2 68 372-443 209-279 (331)
184 PF02633 Creatininase: Creatin 20.4 5.2E+02 0.011 25.7 8.5 23 276-298 103-125 (237)
185 TIGR01754 flav_RNR ribonucleot 20.3 6.3E+02 0.014 22.7 10.7 22 192-213 12-33 (140)
186 TIGR00539 hemN_rel putative ox 20.3 2.3E+02 0.0049 30.1 6.2 53 184-241 57-115 (360)
187 PTZ00242 protein tyrosine phos 20.2 3.4E+02 0.0075 25.7 6.8 66 365-445 23-91 (166)
188 TIGR01364 serC_1 phosphoserine 20.2 4.8E+02 0.01 27.6 8.6 98 292-418 7-104 (349)
189 cd00950 DHDPS Dihydrodipicolin 20.1 2.8E+02 0.006 28.2 6.6 67 370-439 79-152 (284)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=4e-107 Score=870.09 Aligned_cols=404 Identities=86% Similarity=1.341 Sum_probs=380.1
Q ss_pred ccCCCCCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHH
Q 009474 114 ASLVGDEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRI 193 (534)
Q Consensus 114 ~~~~~~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~ 193 (534)
....+++|+||||+|||||++++||++||+|||+|++||++|+++|++|++|+.+|+++|++|++++|++|||||||+.+
T Consensus 82 ~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~i 161 (485)
T PLN02449 82 HPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKI 161 (485)
T ss_pred cccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHH
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCC
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVN 273 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~ 273 (534)
|++|+++|++.|++.+.+++|++|||||+|+++|++++|+++|+++||++|||||||.+|+||+++.+++++++......
T Consensus 162 T~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~ 241 (485)
T PLN02449 162 TDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVN 241 (485)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccC
Confidence 99999999999988788899999999999999999999999999999999999999999999999999888876543345
Q ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCC
Q 009474 274 MQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNA 353 (534)
Q Consensus 274 i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~ 353 (534)
+++++|++||+||+||+|++++|++++++++.+++++|||||||+|+++++++||||++||++|+++|+++|+.++..++
T Consensus 242 ~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~~ 321 (485)
T PLN02449 242 MQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILNR 321 (485)
T ss_pred CeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCCC
Confidence 67899999999999999999999999988765667789999999999999778999999999999999999987543357
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 009474 354 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 433 (534)
Q Consensus 354 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~f 433 (534)
|+++||||+||++||+|+|+|+|++|+++|+|+|+|||||||+||+|||||||+|++|+|+++|+++|.|+||||+||.|
T Consensus 322 ~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~F 401 (485)
T PLN02449 322 HTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPTF 401 (485)
T ss_pred eEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcccccccccccccccCcchhhhhhccccccccCCCCCcccccCccchhhhhhhhHHHHHHHHHH
Q 009474 434 ISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLL 513 (534)
Q Consensus 434 I~~Lad~V~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~g~~~~aE~~NGR~AM~G~~~~~ 513 (534)
|++|+++|.+++...+++..+....+..+...+.|++....|+..+|+++ |+..|.||||+ +||+||++++
T Consensus 402 I~~La~lV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~ 472 (485)
T PLN02449 402 ISDLADAVIEALPYVGAMAVSNLEARQSLVPLGSVEELLATYDSQRRELP-PVAVWEWGWTK--------AAMLAVLLLL 472 (485)
T ss_pred HHHHHHHHHHHhhcccccccccCCCcccchhhcchHHHHhhhhhccccCC-Cchhhhhcccc--------hHHHHHHHHH
Confidence 99999999999998788888887778888888999999999999999999 99999999997 9999999999
Q ss_pred HHHHHhCcchhhh
Q 009474 514 VLEVTTGEGFLHQ 526 (534)
Q Consensus 514 ~~e~~tg~~~~~~ 526 (534)
..|++||+|.+++
T Consensus 473 ~~~~~~~~~~~~~ 485 (485)
T PLN02449 473 VLEVTSGFGNLHQ 485 (485)
T ss_pred HHHHHcCCCcCCC
Confidence 9999999999874
No 2
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-91 Score=711.37 Aligned_cols=318 Identities=47% Similarity=0.764 Sum_probs=301.6
Q ss_pred CCCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHH
Q 009474 118 GDEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQ 197 (534)
Q Consensus 118 ~~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 197 (534)
+.+|+||||||||||++.+||++||+|||+|++|+++|+++|+ + |+++|++.|++|++++|+.|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~--~-l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY--P-LAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh--h-hhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 3468999999999999999999999999999999999998775 3 999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEE
Q 009474 198 AEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 277 (534)
Q Consensus 198 a~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~ 277 (534)
+++|+++|+ ..+++|++|||||+|+++|++++|+++|+++||++|||||||++|||++.+++.+++++.+ ..++++
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~ 154 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKIS 154 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceE
Confidence 999999998 3489999999999999999999999999999999999999999999999999999998766 346799
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEE
Q 009474 278 VIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLA 357 (534)
Q Consensus 278 ~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~la 357 (534)
+|++|++||.||+||+++|++.+++++ .++.+|||||||+|++++ +.||||.+||++|+++|+++||+.. ++|.++
T Consensus 155 ~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~-~~GDpY~~q~~~t~~li~e~lg~~~--~~~~~~ 230 (320)
T COG0276 155 TIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYI-DEGDPYPQQCQETTRLIAEALGLPE--EEYDLT 230 (320)
T ss_pred EecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhh-hcCCchHHHHHHHHHHHHHHcCCCc--hheeEE
Confidence 999999999999999999999999987 356789999999999999 6799999999999999999998643 469999
Q ss_pred EecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHH
Q 009474 358 YQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDL 437 (534)
Q Consensus 358 fQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~L 437 (534)
|||++|+++||+|+|+|++++|.++|+|+|+|||||||+||+|||+|||+|+++++++.|+.+|.|+|||||||+||++|
T Consensus 231 ~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~l 310 (320)
T COG0276 231 FQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDAL 310 (320)
T ss_pred eecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 009474 438 ADAVIESLP 446 (534)
Q Consensus 438 ad~V~e~L~ 446 (534)
+++|.+.+.
T Consensus 311 a~lv~~~~~ 319 (320)
T COG0276 311 ADLVRELLN 319 (320)
T ss_pred HHHHHHHhc
Confidence 999998764
No 3
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-90 Score=694.17 Aligned_cols=355 Identities=56% Similarity=0.875 Sum_probs=333.1
Q ss_pred CCCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHH
Q 009474 118 GDEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQ 197 (534)
Q Consensus 118 ~~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 197 (534)
++.|+||||||||||++++||.+||.++|.|++||+||+ ++|+.|+.||+++|+||+.++|+.|||||||..||+.|
T Consensus 35 ~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~Q 111 (395)
T KOG1321|consen 35 KKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEYQ 111 (395)
T ss_pred cCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHHH
Confidence 456899999999999999999999999999999999996 67999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC---CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCc
Q 009474 198 AEELRKSLWEKN---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNM 274 (534)
Q Consensus 198 a~~L~~~L~~~g---~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i 274 (534)
++.+.+.|++.. .+.++|+|||||+|+.+|++++|+++|++|+|++|+|||||++|+||+++.+.+.+++.....++
T Consensus 112 ~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~ 191 (395)
T KOG1321|consen 112 AEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDI 191 (395)
T ss_pred HHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCC
Confidence 999999999864 67899999999999999999999999999999999999999999999999999999888777889
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCC--CceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCC
Q 009474 275 QHTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITN 352 (534)
Q Consensus 275 ~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~--~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~ 352 (534)
++.+|++|+.|++||+|++++|++.|++|+.+ +++.|+|||||+|++++ ++||||+.|+++|+++||++|+.. |
T Consensus 192 ~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~V-n~GDpY~~Ei~atv~~iMeeL~~~---N 267 (395)
T KOG1321|consen 192 KWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVV-NAGDPYPAEIAATVDLIMEELKYK---N 267 (395)
T ss_pred ceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHH-hcCCCcHHHHHHHHHHHHHHhccC---C
Confidence 99999999999999999999999999999866 89999999999999999 699999999999999999999765 7
Q ss_pred CEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHH
Q 009474 353 AYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEAT 432 (534)
Q Consensus 353 ~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~ 432 (534)
+|+++|||++||.+||+|+|+++|+.|.++|+|++++|||+||+||+|||+|||+||++.+++.|++++.|++.||.+|.
T Consensus 268 ~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~a~k~gve~~~Rv~sln~~p~ 347 (395)
T KOG1321|consen 268 PYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEEALKKGVENWKRVESLNGNPT 347 (395)
T ss_pred cchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHHHHHHHHHHhhhhheeccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcccccccccccccccCcchhhhhhccccccccCCCCCcccccCccchhhhhhhhHHH
Q 009474 433 FISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAM 506 (534)
Q Consensus 433 fI~~Lad~V~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~g~~~~aE~~NGR~AM 506 (534)
||+.|||+|.++|+...++..+++ +.++.|.++. .+.++.|+|+.+|
T Consensus 348 fI~~lADlV~ehL~s~~~~s~q~l----------------~~~~~~~ne~-----------~~e~~s~~~~~~~ 394 (395)
T KOG1321|consen 348 FIEGLADLVAEHLKSNQAYSNQFL----------------ARCPGCSNEP-----------CKEAKSWFGNHES 394 (395)
T ss_pred HHHHHHHHHHHhhhhhhhcchhhh----------------hhCcCcCChh-----------hhHHHHHHHHhhc
Confidence 999999999999998777664442 3445555553 4678999999876
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=1.2e-89 Score=708.19 Aligned_cols=316 Identities=47% Similarity=0.747 Sum_probs=276.0
Q ss_pred cEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHHHH
Q 009474 121 KIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEE 200 (534)
Q Consensus 121 K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~~ 200 (534)
|+||||+|||||++++||++||++||+|++|+++| ++| +++|+++|+++|++|++++|+.|||+|||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 665 469999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeC
Q 009474 201 LRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIP 280 (534)
Q Consensus 201 L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~ 280 (534)
|+++|++++.+++|++|||||+|+|++++++|+++|+++|+++|||||||.+|||++++.+.+++++.. ..+++++|+
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~--~~~~~~~i~ 155 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSR--PNPKVRFIP 155 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTH--SSSEEEEE-
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcC--CCCeEEEeC
Confidence 999999877789999999999999999999999999999999999999999999999999999987643 346799999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEec
Q 009474 281 SWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQS 360 (534)
Q Consensus 281 ~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQS 360 (534)
+|++||.||+|++++|++++++++.++..+|||||||+|+++++++||||.+||++|+++|++++|.. +|.++|||
T Consensus 156 ~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~----~~~~~fQS 231 (316)
T PF00762_consen 156 SFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLP----EWRLAFQS 231 (316)
T ss_dssp --TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTS----SEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCC----ceEEEEEC
Confidence 99999999999999999999987432346899999999999994479999999999999999999865 39999999
Q ss_pred CcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHH
Q 009474 361 RVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADA 440 (534)
Q Consensus 361 r~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~ 440 (534)
++|+++||+|+|+|+|++|+++|+|+|+|+|||||+||+|||||||+|+++.|+++|+++|.|+||||+||.|+++|+++
T Consensus 232 ~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi~~La~~ 311 (316)
T PF00762_consen 232 RFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFIEALADL 311 (316)
T ss_dssp -SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHHHHHHHH
T ss_pred CCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 009474 441 VIESL 445 (534)
Q Consensus 441 V~e~L 445 (534)
|.++|
T Consensus 312 v~~~~ 316 (316)
T PF00762_consen 312 VREHL 316 (316)
T ss_dssp HHHHH
T ss_pred HHhCc
Confidence 99874
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=1e-86 Score=688.19 Aligned_cols=320 Identities=48% Similarity=0.827 Sum_probs=299.5
Q ss_pred CCCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHH
Q 009474 118 GDEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQ 197 (534)
Q Consensus 118 ~~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 197 (534)
+++|+||||+|||||+|.+||++||+|||+|++||++|+++| +++++.+|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~--~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKW--RKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCcccc--ccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 456789999999999999999999999999999999998655 469999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEE
Q 009474 198 AEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 277 (534)
Q Consensus 198 a~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~ 277 (534)
+++|++.|.+. .+++|++|||||+|+|++++++|+++|+++|+++|||||||.+|+||+++++.+++++.... .++++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~ 157 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTIS 157 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEE
Confidence 99999999754 57999999999999999999999999999999999999999999999999999888765421 14689
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEE
Q 009474 278 VIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLA 357 (534)
Q Consensus 278 ~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~la 357 (534)
+|++|++||.||+|++++|++++++++.+++++|||||||+|++++ ++||||.+||.+|+++|++++|.. .+|.++
T Consensus 158 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~-~~Gd~Y~~~~~~ta~~l~~~l~~~---~~~~~~ 233 (322)
T TIGR00109 158 VIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYV-DEGDPYPAECEATTRLIAEKLGFP---NEYRLT 233 (322)
T ss_pred EeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHh-hCCCChHHHHHHHHHHHHHHcCCC---CCeEEE
Confidence 9999999999999999999999988755566689999999999999 899999999999999999999732 369999
Q ss_pred EecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHH
Q 009474 358 YQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDL 437 (534)
Q Consensus 358 fQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~L 437 (534)
|||++|+++||+|+|+|+|++|+++|+|+|+|+|+||++||+|||||||+|+++.|++.|+++|.|+||||+||.|+++|
T Consensus 234 fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l 313 (322)
T TIGR00109 234 WQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAM 313 (322)
T ss_pred EeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 009474 438 ADAVIESL 445 (534)
Q Consensus 438 ad~V~e~L 445 (534)
+++|.+++
T Consensus 314 ~~~v~~~~ 321 (322)
T TIGR00109 314 ATLVKKKL 321 (322)
T ss_pred HHHHHHhh
Confidence 99999865
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=2.3e-82 Score=652.65 Aligned_cols=302 Identities=32% Similarity=0.526 Sum_probs=273.8
Q ss_pred CCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHH
Q 009474 119 DEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQA 198 (534)
Q Consensus 119 ~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa 198 (534)
++|+||||+|||||+++|||++||+|++.|+ .|. +..|+ +.+++|++|||+|||+.+|++|+
T Consensus 2 ~~~~avlll~~GgP~~~~~V~pfL~ni~~g~----~~~-----~~~l~---------~~~~~Y~~iGG~SPL~~~T~~qa 63 (311)
T PRK12435 2 KKKIGLLVMAYGTPYKEEDIERYYTHIRHGR----KPS-----EEMLQ---------DLKDRYEAIGGISPLAKITDEQA 63 (311)
T ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHhcCCC----CCC-----HHHHH---------HHHHHHHHhCCcChHHHHHHHHH
Confidence 4678999999999999999999999999997 221 12333 35899999999999999999999
Q ss_pred HHHHHHHhcc--CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceE
Q 009474 199 EELRKSLWEK--NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQH 276 (534)
Q Consensus 199 ~~L~~~L~~~--g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i 276 (534)
++|+++|++. +++++|++|||||+|+++|+|++|+++|+++|+++|||||||.+|+||+.+.+.+..+.. ..+++
T Consensus 64 ~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~---~~~~~ 140 (311)
T PRK12435 64 KALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKL---GGPTI 140 (311)
T ss_pred HHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhccc---CCCeE
Confidence 9999999864 567999999999999999999999999999999999999999999999888776655432 34578
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhCCC--CCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCE
Q 009474 277 TVIPSWYQREGYITAMANLIEKELQNFDS--PEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAY 354 (534)
Q Consensus 277 ~~I~~~~d~p~yI~Ala~~I~~~l~~~~~--~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~ 354 (534)
++|++|++||.||+|++++|++++++++. +++++|||||||||++++ ++||||++||++|+++|++++|.. +|
T Consensus 141 ~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i-~~GDpY~~q~~~t~~~v~~~l~~~----~~ 215 (311)
T PRK12435 141 TSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKII-AAGDPYPDQLEETADLIAEQANVE----HY 215 (311)
T ss_pred EEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHh-hCCCCHHHHHHHHHHHHHHHcCCC----CC
Confidence 99999999999999999999999988743 255789999999999999 899999999999999999999864 49
Q ss_pred EEEEecCc-CCCCCCCCcHHHHHHHhhhc-CCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHH
Q 009474 355 TLAYQSRV-GPVEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEAT 432 (534)
Q Consensus 355 ~lafQSr~-G~~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~ 432 (534)
.++||||+ |+++||+|+|+|+|++|+++ |+|+|+|+|||||+||+|||||||+|+++.|+++|++ |.|+||||+||.
T Consensus 216 ~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~-~~r~~~lN~~p~ 294 (311)
T PRK12435 216 AIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAK-YYRPEMPNADPL 294 (311)
T ss_pred eEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCc-EEeccCCCCCHH
Confidence 99999996 79999999999999999988 9999999999999999999999999999999999996 889999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 009474 433 FISDLADAVIESLPY 447 (534)
Q Consensus 433 fI~~Lad~V~e~L~~ 447 (534)
||++|+++|.+++..
T Consensus 295 fi~~La~lv~~~~~~ 309 (311)
T PRK12435 295 FIDALADVVLKKLKS 309 (311)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987643
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=3e-80 Score=641.57 Aligned_cols=324 Identities=47% Similarity=0.752 Sum_probs=303.2
Q ss_pred CCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHH
Q 009474 119 DEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQA 198 (534)
Q Consensus 119 ~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa 198 (534)
++|+||||+|||||++++||++||+|||+|++|+++|.++|+ ++|+++|++.|++|++++|+.||+||||+.+|++|+
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~--~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 80 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQ--PLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQA 80 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHH--HHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 367999999999999999999999999999999999998875 799999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEE
Q 009474 199 EELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTV 278 (534)
Q Consensus 199 ~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~ 278 (534)
++|++.|++.+.++.|++||+||+|+++|+|++|+++|+++|+|+|||||||.+|+|++++++.+.+++... .+++++
T Consensus 81 ~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~ 158 (333)
T PRK00035 81 EALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRF 158 (333)
T ss_pred HHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEE
Confidence 999999987777899999999999999999999999999999999999999999999999999888876542 457999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCCC-CceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEE
Q 009474 279 IPSWYQREGYITAMANLIEKELQNFDSP-EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLA 357 (534)
Q Consensus 279 I~~~~d~p~yI~Ala~~I~~~l~~~~~~-~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~la 357 (534)
+++|++||.||++++++|++++++.+.+ ++.+|||||||+|++++ ++||||.++|++|++++++++|... .+|.+|
T Consensus 159 i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~-~~gd~Y~~~~~~t~~~l~~~l~~~~--~~~~~~ 235 (333)
T PRK00035 159 IRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYI-DKGDPYQQQCEETARLLAEALGLPD--EDYDLT 235 (333)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHh-hcCCChHHHHHHHHHHHHHHhCCCC--CCeEEE
Confidence 9999999999999999999999876533 35689999999999998 8999999999999999999998522 359999
Q ss_pred EecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHH
Q 009474 358 YQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDL 437 (534)
Q Consensus 358 fQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~L 437 (534)
|||++|+++|++|+++|+|++|+++|+|+|+|+|+|||+||+|||+|||+|+++.++++|+..|.|+||||+||.|+++|
T Consensus 236 fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~l 315 (333)
T PRK00035 236 YQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEAL 315 (333)
T ss_pred eeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHhCCCCC
Q 009474 438 ADAVIESLPYVG 449 (534)
Q Consensus 438 ad~V~e~L~~~~ 449 (534)
+++|.+++.++.
T Consensus 316 ~~~v~~~~~~~~ 327 (333)
T PRK00035 316 ADLVRENLQGWP 327 (333)
T ss_pred HHHHHHHhcCCc
Confidence 999999876543
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=5.7e-42 Score=321.46 Aligned_cols=159 Identities=50% Similarity=0.780 Sum_probs=149.2
Q ss_pred EEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHHHHH
Q 009474 122 IGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 201 (534)
Q Consensus 122 ~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~~L 201 (534)
+||||+|||||++++||++||.+||+|++||++|.++ +++|+.+|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 4899999999999999999999999999999999875 5799999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCC
Q 009474 202 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 281 (534)
Q Consensus 202 ~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~ 281 (534)
+++|++.+.++.|++|||||+|+|+|+|++|+++|+++|+++|||||||.+||||+++.+.+++++... .+++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987666799999999999999999999999999999999999999999999999999988876542 346899999
Q ss_pred CCCC
Q 009474 282 WYQR 285 (534)
Q Consensus 282 ~~d~ 285 (534)
|++|
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9986
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=7.6e-38 Score=286.72 Aligned_cols=135 Identities=46% Similarity=0.803 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCC
Q 009474 290 TAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLK 369 (534)
Q Consensus 290 ~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~ 369 (534)
++++++|++++++.+ ++...|||||||+|.+++ ++||||.+||.+|+++|+++++... .+|.++|||++|+++||+
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~-~~gd~Y~~~~~~~~~~v~~~l~~~~--~~~~~~fqS~~g~~~Wl~ 76 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDI-KKGDPYPDQCEETARLVAERLGLPF--DEYELAYQSRFGPGEWLE 76 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHh-hCCCCHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCCCCCCC
Confidence 478999999998874 344579999999999999 7999999999999999999998432 369999999999999999
Q ss_pred CcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCC
Q 009474 370 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG 428 (534)
Q Consensus 370 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LN 428 (534)
|+|+|+|++|+++|+++|+|+|+||++||+|||+|||+|+++.++++|+..|.|+||||
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999988999999998
No 10
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.85 E-value=7.6e-21 Score=191.94 Aligned_cols=242 Identities=20% Similarity=0.316 Sum_probs=162.8
Q ss_pred EEEEEEccCCCC------ChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHH
Q 009474 122 IGVLLLNLGGPE------TLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITD 195 (534)
Q Consensus 122 ~aVLLvnlGtP~------s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~ 195 (534)
+||||++|||.. +++.|+.=+++-|.|.+|.. ++++.+
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~---------AfTS~~--------------------------- 44 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRR---------AFTSRI--------------------------- 44 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEE---------EES-HH---------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE---------EchHHH---------------------------
Confidence 599999999976 46888999999999977644 455655
Q ss_pred HHHHHHHHHHhcc-CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccc-cCC
Q 009474 196 AQAEELRKSLWEK-NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY-LVN 273 (534)
Q Consensus 196 ~qa~~L~~~L~~~-g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~-~~~ 273 (534)
+.++|.++ |+.+ +++.+||++|.++|+++|+|+|| +...|..++++.+..+.... +.
T Consensus 45 -----I~~kl~~~~g~~i----------~~~~eaL~~L~~~G~~~V~VQpl-----hiipG~Ey~~l~~~v~~~~~~F~- 103 (262)
T PF06180_consen 45 -----IRKKLAERDGIKI----------DSPEEALAKLADEGYTEVVVQPL-----HIIPGEEYEKLRATVEAYKHDFK- 103 (262)
T ss_dssp -----HHHHHHHCHT---------------HHHHHHHHHHCT--EEEEEE-------SCSSHHHHHHHHHHHHHCCCSS-
T ss_pred -----HHHHHHhcCCCCc----------CCHHHHHHHHHHCCCCEEEEeec-----ceeCcHhHHHHHHHHHHhhccCC-
Confidence 45666665 6555 89999999999999999999999 68999999999877765543 22
Q ss_pred ceEEEeCCCCC------CHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhcc
Q 009474 274 MQHTVIPSWYQ------REGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEK 347 (534)
Q Consensus 274 i~i~~I~~~~d------~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~ 347 (534)
++++..+.-. ++.=++++++.|.+.+.... .+-.+||++||.|+... ..|. ..+.+.++.+.
T Consensus 104 -~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~--~~~a~vlmGHGt~h~an----~~Y~-----~l~~~l~~~~~ 171 (262)
T PF06180_consen 104 -KIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKR--KDEAVVLMGHGTPHPAN----AAYS-----ALQAMLKKHGY 171 (262)
T ss_dssp -EEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT---TTEEEEEEE---SCHHH----HHHH-----HHHHHHHCCT-
T ss_pred -eEEecccccccccccCChHHHHHHHHHHHHhccccC--CCCEEEEEeCCCCCCcc----HHHH-----HHHHHHHhCCC
Confidence 4677666544 46666677755554443222 33479999999998753 2354 44555555543
Q ss_pred ccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccch-hhhhhhHhHHHH----HHHHHHHcCCeeEE
Q 009474 348 RKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVS-EHIETLEEIDVE----YKELALKSGIEKWG 422 (534)
Q Consensus 348 ~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EIdiE----~rela~e~G~~~~~ 422 (534)
. ++. +|.++ -.|+++++|++|.+.|+|+|.++|+++|+ ||. .+||..+ -+..+++.|++.-.
T Consensus 172 ~----~v~------vgtvE-G~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa--~nDmaGde~dSWks~L~~~G~~v~~ 238 (262)
T PF06180_consen 172 P----NVF------VGTVE-GYPSLEDVIARLKKKGIKKVHLIPLMLVAGDHA--KNDMAGDEEDSWKSRLEAAGFEVTC 238 (262)
T ss_dssp T----TEE------EEETT-SSSBHHHHHHHHHHHT-SEEEEEEESSS--HHH--HCCCCSSSTTSHHHHHHHTT-EEEE
T ss_pred C----eEE------EEEeC-CCCCHHHHHHHHHhcCCCeEEEEecccccchhh--hhhhcCCCcchHHHHHHHCCCEEEE
Confidence 2 133 34444 47999999999999999999999999999 999 7998663 38899999999889
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhC
Q 009474 423 RVPALGCEATFISDLADAVIESL 445 (534)
Q Consensus 423 rvp~LNdsp~fI~~Lad~V~e~L 445 (534)
....||+.|.|++.+.+++.+++
T Consensus 239 ~l~GLGE~~~i~~ifi~hl~~ai 261 (262)
T PF06180_consen 239 VLKGLGEYPAIQQIFIEHLKEAI 261 (262)
T ss_dssp ----GGGSHHHHHHHHHHHHHHH
T ss_pred EeccCcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 11
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.80 E-value=7e-18 Score=163.09 Aligned_cols=241 Identities=18% Similarity=0.304 Sum_probs=182.2
Q ss_pred cEEEEEEccCCCC------ChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHH
Q 009474 121 KIGVLLLNLGGPE------TLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRIT 194 (534)
Q Consensus 121 K~aVLLvnlGtP~------s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T 194 (534)
|+|+|+|+|||.. |++.+++-+..-|.|++|.+ ++++..
T Consensus 2 KKailiVsFGTty~dtre~tIda~e~~va~efpDydvfr---------AfTS~k-------------------------- 46 (265)
T COG4822 2 KKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFR---------AFTSRK-------------------------- 46 (265)
T ss_pred CceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHH---------HHhHHH--------------------------
Confidence 6799999999998 68999999999999987754 555554
Q ss_pred HHHHHHHHHHHhcc-CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccc-cC
Q 009474 195 DAQAEELRKSLWEK-NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY-LV 272 (534)
Q Consensus 195 ~~qa~~L~~~L~~~-g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~-~~ 272 (534)
+.++|.++ |+++ -....||.+|+++|+++++++|+ +...|..++.+.+....... +.
T Consensus 47 ------IIkkLK~rdgi~~----------dTP~~aL~klk~~gy~eviiQ~l-----hiIpG~EyEklvr~V~~~~~dF~ 105 (265)
T COG4822 47 ------IIKKLKERDGIDF----------DTPIQALNKLKDQGYEEVIIQPL-----HIIPGIEYEKLVREVNKYSNDFK 105 (265)
T ss_pred ------HHHHHHhhcCccc----------CCHHHHHHHHHHccchheeeeee-----eecCchHHHHHHHHHHHHhhhhh
Confidence 45567666 7666 56789999999999999999999 58899998887655544322 22
Q ss_pred CceEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccc
Q 009474 273 NMQHTVIPS----WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKR 348 (534)
Q Consensus 273 ~i~i~~I~~----~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~ 348 (534)
. +.+.++ -.|++.+++|+. +.+....+ ++ .+||+.||.-+... ..|. +.+.+...-|..
T Consensus 106 ~--lkig~PlLy~k~DYe~~v~aik----~~~ppl~k-~e-~~vlmgHGt~h~s~----~~Ya-----cLd~~~~~~~f~ 168 (265)
T COG4822 106 R--LKIGRPLLYYKNDYEICVEAIK----DQIPPLNK-DE-ILVLMGHGTDHHSN----AAYA-----CLDHVLDEYGFD 168 (265)
T ss_pred e--eecCCceeechhhHHHHHHHHH----HhcCCcCc-Ce-EEEEEecCCCccHH----HHHH-----HHHHHHHhcCCC
Confidence 2 222222 233344444444 44432222 33 69999999966543 2354 777777765542
Q ss_pred cCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccch-hhhhhhHhHH----HHHHHHHHHcCCeeEEE
Q 009474 349 KITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVS-EHIETLEEID----VEYKELALKSGIEKWGR 423 (534)
Q Consensus 349 ~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EId----iE~rela~e~G~~~~~r 423 (534)
++.++- ++ ..|.++++|+.|.+.|++.|-++|++||+ ||. ..||. ...+++++++|++.-.+
T Consensus 169 ----~v~v~~------ve-~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha--~nDMasddedswk~il~~~G~~v~~~ 235 (265)
T COG4822 169 ----NVFVAA------VE-GYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHA--KNDMASDDEDSWKNILEKNGFKVEVY 235 (265)
T ss_pred ----ceEEEE------ec-CCCcHHHHHHHHHHcCCceEEEeeeEEeechhh--hhhhcccchHHHHHHHHhCCceeEEE
Confidence 233331 22 36999999999999999999999999999 999 89998 77899999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 424 VPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 424 vp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
+..||+.|+|.+.+.+++..++..
T Consensus 236 l~GLGE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 236 LHGLGENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred eecCCCcHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987754
No 12
>PRK02395 hypothetical protein; Provisional
Probab=99.70 E-value=3.5e-15 Score=152.21 Aligned_cols=234 Identities=13% Similarity=0.079 Sum_probs=168.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 264 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~ 264 (534)
|=||+......+..+.+.+.|.+++....|..||--.+|+++++++++. .++|+|+|+|- +..++..+++.+.
T Consensus 8 gHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL----~~G~Hv~~DIP~~ 80 (279)
T PRK02395 8 GHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFI----SEGYFTEQVIPRE 80 (279)
T ss_pred eCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEe----ccccchhhhhHHH
Confidence 5677665566666677777776654444788888669999999999985 58999999983 4444556678777
Q ss_pred HHhcc-----ccC------CceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHH
Q 009474 265 FREDE-----YLV------NMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAE 333 (534)
Q Consensus 265 ~~~~~-----~~~------~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q 333 (534)
+...+ .++ .+++.+.++++.||.+++++.+++++.....+.+++..||+.+||.+... --...
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~~~------~a~~~ 154 (279)
T PRK02395 81 LGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTERNE------NSAKA 154 (279)
T ss_pred hcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCCch------hHHHH
Confidence 65311 112 56788999999999999999999998875432234557999999986321 12344
Q ss_pred HHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccch-hhhhhhHhHHHHHHHH
Q 009474 334 MEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVS-EHIETLEEIDVEYKEL 412 (534)
Q Consensus 334 ~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EIdiE~rel 412 (534)
+++.++.+.++.+.. .+.++|.. .+|+++++++++. .++|+|+|+.++. +|. ..||..+....
T Consensus 155 ~~~~a~~l~~~~~~~----~V~~~fle-------~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~--~~DIp~~~~~~ 218 (279)
T PRK02395 155 IYYHADRLRERGRFA----EVEALFLD-------EEPEVDDWPDLFE---ADDVVVVPLFIADGFHT--QEDIPEDMGLT 218 (279)
T ss_pred HHHHHHHHHhhCCCC----eEEEEecc-------CCCCHHHHHHHhC---CCeEEEEeeecccCcch--HhHHHHHHHHh
Confidence 555666666654322 37788864 2699999999875 4899999998666 888 56666554322
Q ss_pred HH-HcC--------CeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 413 AL-KSG--------IEKWGRVPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 413 a~-e~G--------~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
.. +.| ...+.+.+.||+||.+++.+++++.+.+..
T Consensus 219 ~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~ 262 (279)
T PRK02395 219 DDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGAD 262 (279)
T ss_pred hccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcC
Confidence 11 112 335889999999999999999999988764
No 13
>PHA02337 putative high light inducible protein
Probab=99.38 E-value=3.1e-13 Score=95.35 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=31.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhCcchhh
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 525 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~ 525 (534)
||+.||+||||+||+||++++++|++||+++..
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 789999999999999999999999999999864
No 14
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.26 E-value=4.1e-11 Score=102.95 Aligned_cols=87 Identities=31% Similarity=0.507 Sum_probs=77.0
Q ss_pred EEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEE
Q 009474 311 IFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 390 (534)
Q Consensus 311 LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 390 (534)
|||++||.|.. ++|...+++.++.+.++++. .++.++|++. +.|++++++++|.++|+++|+|+
T Consensus 2 lllv~HGs~~~------s~~~~~~~~~~~~l~~~~~~----~~v~~a~~~~------~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 2 LLVVGHGSPYK------DPYKKDIEAQAHNLAESLPD----FPYYVGFQSG------LGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred EEEEECCCCCC------ccHHHHHHHHHHHHHHHCCC----CCEEEEEECC------CCCCHHHHHHHHHHcCCCeEEEE
Confidence 79999999743 57999999999999988742 2589999993 68999999999999999999999
Q ss_pred ccccchhhhhhhHhHHHHHHHHHH
Q 009474 391 PISFVSEHIETLEEIDVEYKELAL 414 (534)
Q Consensus 391 PigFvsDhlETL~EIdiE~rela~ 414 (534)
|+.|+ ++.||.+||..+.++..+
T Consensus 66 Pl~~~-~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 66 PLAPV-SGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred eCccc-cChhhHHHHHHHHHHHHH
Confidence 99999 999999999999988776
No 15
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.16 E-value=3.2e-10 Score=97.40 Aligned_cols=74 Identities=30% Similarity=0.372 Sum_probs=58.6
Q ss_pred CchHHHHHHHHHHHHHHHhccCCCceEEEeeecC-CCCHHHHHHHHHHcCCCEEEEEecCCcccccchH-HHHHHHHHHH
Q 009474 188 SPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYW-HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSG-SSLRLLESIF 265 (534)
Q Consensus 188 SPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~-~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtG-s~~~~l~e~~ 265 (534)
||.+..+++++++|++++. +..|++||+++ .|++++++++|+++|+++|+++|+||+ +..++. ...+++.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 3556677788888888774 46799999999 999999999999999999999999999 555554 5555555544
Q ss_pred H
Q 009474 266 R 266 (534)
Q Consensus 266 ~ 266 (534)
+
T Consensus 88 ~ 88 (101)
T cd03409 88 K 88 (101)
T ss_pred H
Confidence 3
No 16
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.08 E-value=7.5e-09 Score=104.22 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=153.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM-RY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e 263 (534)
|-||++....+ ..+++.+.+.+++....|..|| -+.+|+++++++.+..+|+++|+|+|+| .+...+..+++.+
T Consensus 9 gHGsr~p~~~~-~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlf----l~~g~H~~~DIP~ 83 (245)
T COG2138 9 GHGSRLPRGRE-VAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLF----LAAGYHTKRDIPA 83 (245)
T ss_pred ecCCCCccHHH-HHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehh----hccCchhhcccHH
Confidence 56787777744 4455556777766545567766 8999999999999999999999999998 4566788888877
Q ss_pred HHHhccc-cCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHH
Q 009474 264 IFREDEY-LVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIM 342 (534)
Q Consensus 264 ~~~~~~~-~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~ 342 (534)
.+...+. .+.. ... +++.|+...+.+.+++.+....... +-..+++..||-=... -...+...++.+.
T Consensus 84 ~L~~~~~~~~~~--~~~-p~G~~~~~~~~~~~r~~~~~~~~~~-~~~~vv~~~~Gs~~~~-------~~~~~~~va~~l~ 152 (245)
T COG2138 84 ELGLARQAHPQV--DLS-PLGTHPAVLDLLGQRLEDAGADEAD-DAERVVLEPRGSSDPI-------ANAAVYRVARLLG 152 (245)
T ss_pred HHHHhhhcCCcc--ccc-ccCCchHHHHHHHHHHHHhcccccc-ccceEEEeccCCCccc-------chhHHHHHHHHHH
Confidence 6654432 3332 223 8999999999999999888765431 1113778887752111 1222223444444
Q ss_pred HHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEE
Q 009474 343 EELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 422 (534)
Q Consensus 343 e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~ 422 (534)
+..+.. .....+|.. . .+|.+.+...++. .++++|+|+ |+.|-+.|.+.+..+. +....+.....
T Consensus 153 ~~~~~~---~~~~~~~~~-~-----~~~~l~~~~~~~~---~~~~vv~P~-fL~~G~l~~~~~~~~~--~~~~~~~~~i~ 217 (245)
T COG2138 153 EGTASW---KAVITLFTG-V-----AEPGLAGETARLR---YRRVVVLPY-FLFDGLLTDRIRPEVE--LRLAVPEGEIA 217 (245)
T ss_pred hccCCc---eeeeeeecc-c-----cCcchhhhhhhcc---cCcEEEEEh-hHhCchhhhhhHHhhh--hhhccCCcceE
Confidence 332100 012233322 1 2588888887776 589999985 5555554455554444 44445555678
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhCC
Q 009474 423 RVPALGCEATFISDLADAVIESLP 446 (534)
Q Consensus 423 rvp~LNdsp~fI~~Lad~V~e~L~ 446 (534)
+.+.+|.+|...+++.+++.+...
T Consensus 218 ~~~~lG~~p~l~~~~~~r~~~~~~ 241 (245)
T COG2138 218 LARPLGTHPRLADAVLDRVREARA 241 (245)
T ss_pred ecCcCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999987654
No 17
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.00 E-value=1.1e-08 Score=96.20 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=100.0
Q ss_pred CceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCce
Q 009474 307 EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKS 386 (534)
Q Consensus 307 ~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~ 386 (534)
++..||+.+||.... .....+++.++.+.++.+.. .++++|-. -.+|+++++|+++.++|+++
T Consensus 12 ~~~~lllvgHGSrd~-------~a~~~~~~la~~l~~~~~~~----~V~~aFle------~~~Psl~eal~~l~~~g~~~ 74 (154)
T PLN02757 12 DKDGVVIVDHGSRRK-------ESNLMLEEFVAMYKQKTGHP----IVEPAHME------LAEPSIKDAFGRCVEQGASR 74 (154)
T ss_pred CCcEEEEEeCCCCCH-------HHHHHHHHHHHHHHhhCCCC----cEEEEEEe------cCCCCHHHHHHHHHHCCCCE
Confidence 445799999998532 15678888888888766432 36788865 23699999999999999999
Q ss_pred EEEEccccch-hhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 387 LLAVPISFVS-EHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 387 VvVvPigFvs-DhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
|+|+|+.++. -|+ ..||..+.++...+++...+.+.++|+.||.++++|++++.+.+..
T Consensus 75 vvVvP~FL~~G~H~--~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~ 134 (154)
T PLN02757 75 VIVSPFFLSPGRHW--QEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSH 134 (154)
T ss_pred EEEEEhhhcCCcch--HhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999988554 887 6788888888888887778999999999999999999999998865
No 18
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.89 E-value=9.1e-10 Score=107.85 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=37.0
Q ss_pred ccCccchhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhcccc
Q 009474 490 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILP 531 (534)
Q Consensus 490 ~~g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g~~~ 531 (534)
.||+.. ||+||||+|||||++++++|++||+|+++|+|-++
T Consensus 156 rf~l~~-aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~ 196 (250)
T PLN00014 156 RFHLPE-AELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF 196 (250)
T ss_pred hccCch-hHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence 356654 99999999999999999999999999999998765
No 19
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.85 E-value=7.5e-08 Score=85.39 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=85.9
Q ss_pred EEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
.+|+.+||.+.. ...+.+++.++.+.++++. .++..+|-+. ..|+++++++++.++|+++|+|
T Consensus 2 a~llv~HGS~~~-------~~~~~~~~l~~~l~~~~~~----~~v~~afle~------~~P~~~~~l~~l~~~g~~~i~v 64 (117)
T cd03414 2 AVVLVGRGSSDP-------DANADVAKIARLLEEGTGF----ARVETAFAAA------TRPSLPEALERLRALGARRVVV 64 (117)
T ss_pred EEEEEcCCCCCH-------HHHHHHHHHHHHHHHhcCC----CeEEEEEecC------CCCCHHHHHHHHHHcCCCEEEE
Confidence 578999998522 1445666777777766542 2478888661 2699999999999999999999
Q ss_pred Eccccch-hhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhC
Q 009474 390 VPISFVS-EHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESL 445 (534)
Q Consensus 390 vPigFvs-DhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L 445 (534)
+|+.++. .|. .+|..+..+...+ +...+.+.+.||.+|.+++++++++.+.+
T Consensus 65 vP~fL~~G~h~---~~i~~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~~ 117 (117)
T cd03414 65 LPYLLFTGVLM---DRIEEQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREAL 117 (117)
T ss_pred EechhcCCchH---HHHHHHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhhC
Confidence 9987555 555 4565555555444 45568999999999999999999998753
No 20
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.82 E-value=2.4e-08 Score=90.11 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=80.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~A-MRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e 263 (534)
|-||+... ..+..+++.+.+.+++....|++| |.|+.|++++++++|.++|+++|+|+|+|- +...+..+++.+
T Consensus 8 ~hGS~~~~-~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl----~~G~h~~~dip~ 82 (126)
T PRK00923 8 GHGSRLPY-NKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFL----AHGVHTKRDIPR 82 (126)
T ss_pred eCCCCChH-HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhh----ccCcccccccch
Confidence 45666533 345566677777765555678888 689999999999999999999999999983 333345555554
Q ss_pred HHH-------hc-cccCCceEEEeCCCCCCHHHHHHHHHHHHH
Q 009474 264 IFR-------ED-EYLVNMQHTVIPSWYQREGYITAMANLIEK 298 (534)
Q Consensus 264 ~~~-------~~-~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~ 298 (534)
++. +. ...+.+++.+.++.+.||.+++++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e 125 (126)
T PRK00923 83 ILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANE 125 (126)
T ss_pred hhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhh
Confidence 333 11 123567788999999999999999999975
No 21
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.80 E-value=6.5e-08 Score=87.24 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=83.3
Q ss_pred EEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
.+|+.+||..... ....+.+.++.+.++.+. .++.++|-+ + ..|++++++++|.++|+++|+|
T Consensus 3 ~lvlv~hGS~~~~-------~~~~~~~~~~~l~~~~~~----~~v~~afle-~-----~~P~l~~~l~~l~~~g~~~v~v 65 (126)
T PRK00923 3 GLLLVGHGSRLPY-------NKEVVTKIAEKIKEKHPF----YIVEVGFME-F-----NEPTIPEALKKLIGTGADKIIV 65 (126)
T ss_pred EEEEEeCCCCChH-------HHHHHHHHHHHHHHhCCC----CeEEEEEEE-c-----CCCCHHHHHHHHHHcCCCEEEE
Confidence 6899999985321 345555666666665432 247888865 1 2599999999999999999999
Q ss_pred Eccccch-hhhhhhHhHHHHHH-------HHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHh
Q 009474 390 VPISFVS-EHIETLEEIDVEYK-------ELALKSGIEKWGRVPALGCEATFISDLADAVIES 444 (534)
Q Consensus 390 vPigFvs-DhlETL~EIdiE~r-------ela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~ 444 (534)
+|+.++. .|. ..||..+.. ++..+.....+.+.++||+||.+++.+.+++.++
T Consensus 66 vPlfl~~G~h~--~~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 66 VPVFLAHGVHT--KRDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred EchhhccCccc--ccccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 9987554 777 355554332 2333333446889999999999999999998763
No 22
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.79 E-value=8.7e-08 Score=87.24 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=87.8
Q ss_pred EEEEEEccCCCCC-----hhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHH
Q 009474 122 IGVLLLNLGGPET-----LEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDA 196 (534)
Q Consensus 122 ~aVLLvnlGtP~s-----~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~ 196 (534)
+||||+.+||.+. ++.+..=+++-+.|..|.. .+++.+
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~---------afts~~---------------------------- 43 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRW---------AFTSRM---------------------------- 43 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEE---------EecHHH----------------------------
Confidence 4899999999983 3444444555566654422 234433
Q ss_pred HHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceE
Q 009474 197 QAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQH 276 (534)
Q Consensus 197 qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i 276 (534)
+.++|++++.. .|++.++|++|.++|+++|+|+|++ ...|..++++.+.+++.+ .+..++
T Consensus 44 ----i~~~l~~~~~~----------~p~~~eaL~~l~~~G~~~V~V~Pl~-----l~~G~e~~di~~~v~~~~-~~~~~i 103 (127)
T cd03412 44 ----IRKKLKKRGIE----------VDTPEEALAKLAADGYTEVIVQSLH-----IIPGEEYEKLKREVDAFK-KGFKKI 103 (127)
T ss_pred ----HHHHHHhcCCC----------CCCHHHHHHHHHHCCCCEEEEEeCe-----eECcHHHHHHHHHHHHHh-CCCceE
Confidence 44556554433 4999999999999999999999996 567888888888777655 355678
Q ss_pred EEeCCCCCCHHHHHHHHHHHHH
Q 009474 277 TVIPSWYQREGYITAMANLIEK 298 (534)
Q Consensus 277 ~~I~~~~d~p~yI~Ala~~I~~ 298 (534)
++.++...++.-++.+++.|.+
T Consensus 104 ~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 104 KLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred EEccCCCCCHHHHHHHHHHHHh
Confidence 9999999999998888876654
No 23
>PLN02757 sirohydrochlorine ferrochelatase
Probab=98.77 E-value=1.6e-07 Score=88.44 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=83.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~A-MRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e 263 (534)
|-||+-.... +..+.+.+.|.++.....|..| |.+.+|+++++|+++.+.|+++|+|+|+|- ++..+..+++.+
T Consensus 20 gHGSrd~~a~-~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL----~~G~H~~~DIp~ 94 (154)
T PLN02757 20 DHGSRRKESN-LMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFL----SPGRHWQEDIPA 94 (154)
T ss_pred eCCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhh----cCCcchHhHHHH
Confidence 5566655533 3334455555443222235455 488999999999999999999999999983 445555667776
Q ss_pred HHHhcc-ccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhC
Q 009474 264 IFREDE-YLVNMQHTVIPSWYQREGYITAMANLIEKELQNF 303 (534)
Q Consensus 264 ~~~~~~-~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~ 303 (534)
.+++.+ .++.+++.+.++++.||.+++++.+++++++...
T Consensus 95 ~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 95 LTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 665443 3577889999999999999999999999998653
No 24
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.75 E-value=4.4e-09 Score=98.75 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=40.0
Q ss_pred ccccccccCCCCCcccccCccchhhhhhhhHHHHHHHHHHHHHHHh-Ccchhhhhcc
Q 009474 474 TYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTT-GEGFLHQWGI 529 (534)
Q Consensus 474 ~~~~~~r~l~~~~~~~~~g~~~~aE~~NGR~AM~G~~~~~~~e~~t-g~~~~~~~g~ 529 (534)
.||.+-||- +..|+||||+||+||+++++.|++| |+|+++|+++
T Consensus 127 a~~~~vrEq------------K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 127 AIDDQVREQ------------KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred hHHHHHHhc------------cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 778887773 6789999999999999999999999 9999999875
No 25
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.73 E-value=1.8e-07 Score=83.02 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=80.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeec-CCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRY-WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY-~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e 263 (534)
|-||+..... +..+.+.+.|.++.....|+.||-. +.|+++++++++.++|+++|+|+|+|- ..|...+++.+
T Consensus 7 ~HGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL-----~~G~h~~~i~~ 80 (117)
T cd03414 7 GRGSSDPDAN-ADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLL-----FTGVLMDRIEE 80 (117)
T ss_pred cCCCCCHHHH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechh-----cCCchHHHHHH
Confidence 4466644333 4556677777665444678988855 699999999999999999999999973 34444566655
Q ss_pred HHHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHH
Q 009474 264 IFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKE 299 (534)
Q Consensus 264 ~~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~ 299 (534)
..++....+..++.+.++.+.||.+++++.++++++
T Consensus 81 ~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 81 QVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 544332225567889999999999999999999865
No 26
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.70 E-value=2.4e-07 Score=84.38 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM-RY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e 263 (534)
|-||+..+..+ ..+.|.+.|+++ .+++|+.|| -+..|+++|++++|.++|+++|+|+|+| .+..++..+++.+
T Consensus 7 gHGSR~~~~~~-~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlF----L~~G~Hv~~DiP~ 80 (125)
T cd03415 7 THGSRRNTFNE-DMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAF----LGRGNHVARDIMG 80 (125)
T ss_pred ecCCCChHHHH-HHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhh----ccCCcchHHHHHH
Confidence 55677665543 334455566532 245577775 8999999999999999999999999998 3555788888877
Q ss_pred HHHhc--------cc-cCCceEEEeCCCCCCHHHHHHHHHHHHH
Q 009474 264 IFRED--------EY-LVNMQHTVIPSWYQREGYITAMANLIEK 298 (534)
Q Consensus 264 ~~~~~--------~~-~~~i~i~~I~~~~d~p~yI~Ala~~I~~ 298 (534)
.+++. +. .+.+.+++.++.++||.+++++++++++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 81 ELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 77652 11 2456789999999999999999999875
No 27
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.61 E-value=7.2e-07 Score=81.31 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=83.6
Q ss_pred EEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
.||+.+||.... -..+.+++.++.+.++.+ .++..||-. -.+|++.|.+++|.++|+++|+|
T Consensus 2 ~lllvgHGSR~~-------~~~~~~~~la~~l~~~~~-----~~v~~afle------~~~P~l~~~l~~l~~~G~~~ivV 63 (125)
T cd03415 2 AIIIITHGSRRN-------TFNEDMEEWAAYLERKLG-----VPVYLTYNE------YAEPNWRDLLNELLSEGYGHIII 63 (125)
T ss_pred EEEEEecCCCCh-------HHHHHHHHHHHHHHhccC-----CceEEEEee------cCCCCHHHHHHHHHHCCCCEEEE
Confidence 589999998522 145566666666665432 247788754 24699999999999999999999
Q ss_pred Eccc-cchhhhhhhHhHHHHHHHH-----H-HHcC--CeeEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 390 VPIS-FVSEHIETLEEIDVEYKEL-----A-LKSG--IEKWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 390 vPig-FvsDhlETL~EIdiE~rel-----a-~e~G--~~~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
+|+. |..-|+ ..||-.+..+. . .++. ...+...+.||+||.+++++++++.+
T Consensus 64 vPlFL~~G~Hv--~~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 64 ALAFLGRGNHV--ARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred ehhhccCCcch--HHHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 9865 444777 68887766552 1 1221 13589999999999999999999876
No 28
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.40 E-value=4.6e-07 Score=78.74 Aligned_cols=91 Identities=22% Similarity=0.273 Sum_probs=67.3
Q ss_pred HHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhcc-ccCCceE
Q 009474 199 EELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE-YLVNMQH 276 (534)
Q Consensus 199 ~~L~~~L~~~g~~v~V~~AM-RY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~-~~~~i~i 276 (534)
+.+.+.|.++.. ..|..|| -+..|++++++++|.+.|+++|+|+|+|- +...+..+++.+.++..+ .++.+++
T Consensus 13 ~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL----~~G~h~~~DIp~~l~~~~~~~~~~~v 87 (105)
T PF01903_consen 13 EDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFL----FPGYHVKRDIPEALAEARERHPGIEV 87 (105)
T ss_dssp HHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESS----SSSHHHHCHHHHHHCHHHHCSTTEEE
T ss_pred HHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeee----cCccchHhHHHHHHHHHHhhCCceEE
Confidence 334445554433 6788888 79999999999999999999999999983 344555556877775543 3566789
Q ss_pred EEeCCCCCCHHHHHHHHH
Q 009474 277 TVIPSWYQREGYITAMAN 294 (534)
Q Consensus 277 ~~I~~~~d~p~yI~Ala~ 294 (534)
++.++.+.||.+++++++
T Consensus 88 ~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 88 RVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp EE---GGGSCCHHHHHH-
T ss_pred EECCCCCCCHHHHHHHhC
Confidence 999999999999998874
No 29
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.32 E-value=5.9e-06 Score=86.81 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=84.9
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 009474 184 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 262 (534)
Q Consensus 184 IgggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM-RY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~ 262 (534)
+|-||...+..+. .+.|.++|.++ .+++|+.|| -+.+|++++++++|.++|+++|+|+|+| -+..++..+++.
T Consensus 12 vgHGSRdp~~~~~-~~~La~~l~~~-~~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlF----L~~G~Hv~~DIP 85 (335)
T PRK05782 12 IGHGSRRETFNSD-MEGMANYLKEK-LGVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAF----LGRGNHVFRDIM 85 (335)
T ss_pred EecCCCChHHHHH-HHHHHHHHHhc-cCCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccc----ccCCcchhhhHH
Confidence 3556766655443 34455555443 234577775 8999999999999999999999999998 355568888887
Q ss_pred HHHHhc-------ccc--CCceEEEeCCCCCCHHHHHHHHHHHHHHHHhC
Q 009474 263 SIFRED-------EYL--VNMQHTVIPSWYQREGYITAMANLIEKELQNF 303 (534)
Q Consensus 263 e~~~~~-------~~~--~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~ 303 (534)
+.+... ..+ +.+++++.++.+.||.+++++.+++++.+...
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 86 GELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred HHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 766531 112 34667889999999999999999999998644
No 30
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.25 E-value=6e-06 Score=72.78 Aligned_cols=96 Identities=21% Similarity=0.295 Sum_probs=68.1
Q ss_pred EEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
.+||.+||.+... ....++.++.+.++.+ .++.++|- + -.|++++++++|.++|+++|++
T Consensus 2 ~illvgHGSr~~~--------~~~~~~l~~~l~~~~~-----~~v~~~~l------E-~~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 2 AVVFMGHGTDHPS--------NAVYAALEYVLREEDP-----ANVFVGTV------E-GYPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred eEEEEECCCCchh--------hhHHHHHHHHHHhcCC-----CcEEEEEE------c-CCCCHHHHHHHHHHcCCCEEEE
Confidence 4789999997542 2222233333333321 24677775 3 3799999999999999999999
Q ss_pred Eccccch-hhhhhhHhHHHH----HHHHHHHcCCeeEEEcCCC
Q 009474 390 VPISFVS-EHIETLEEIDVE----YKELALKSGIEKWGRVPAL 427 (534)
Q Consensus 390 vPigFvs-DhlETL~EIdiE----~rela~e~G~~~~~rvp~L 427 (534)
+|+.+++ +|+ -+||..| -+..+++.|++.-.+...|
T Consensus 62 vPl~L~~G~H~--~~Dipge~~~SW~~~l~~~g~~v~~~~~gl 102 (103)
T cd03413 62 MPLMLVAGDHA--HNDMAGDEPDSWKSILEAAGIKVETVLKGL 102 (103)
T ss_pred Eehhheecccc--hhcCCCCCchhHHHHHHHCCCeeEEEeccC
Confidence 9998666 999 7888665 4788889998765555444
No 31
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.24 E-value=1.5e-05 Score=83.78 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=89.3
Q ss_pred eEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEE
Q 009474 309 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 388 (534)
Q Consensus 309 ~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 388 (534)
..+|+.+||.... -..+.+++.++.+.++.+ .++.++|-. -.+|++++.+++|.++|+++|+
T Consensus 7 ~aiLLvgHGSRdp-------~~~~~~~~La~~l~~~~~-----~~V~~aFLE------~~ePsl~eal~~l~~~G~~~Iv 68 (335)
T PRK05782 7 TAIILIGHGSRRE-------TFNSDMEGMANYLKEKLG-----VPIYLTYNE------FAEPNWRSLLNEIIKEGYRRVI 68 (335)
T ss_pred ceEEEEecCCCCh-------HHHHHHHHHHHHHHhccC-----CceEEEEec------cCCCCHHHHHHHHHHCCCCEEE
Confidence 4689999998422 256667777777766543 247788754 3469999999999999999999
Q ss_pred EEccc-cchhhhhhhHhHHHHHHHH-H-----HHc-CC-eeEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 009474 389 AVPIS-FVSEHIETLEEIDVEYKEL-A-----LKS-GI-EKWGRVPALGCEATFISDLADAVIESLPYV 448 (534)
Q Consensus 389 VvPig-FvsDhlETL~EIdiE~rel-a-----~e~-G~-~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~ 448 (534)
|+|+. |..-|+ ..||-.+..+. + .++ |- ..+.+.+.||.||.+++.|++++.+.+...
T Consensus 69 VvPlFL~~G~Hv--~~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 69 IALAFLGRGNHV--FRDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred EecccccCCcch--hhhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 99977 555787 68877666531 1 222 21 357999999999999999999999988643
No 32
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.19 E-value=3.9e-05 Score=69.89 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=86.1
Q ss_pred EEEEeeCCcchhhhccCCCchH-HHHHHHHHHHHHHhccccCCCCEEEEEecCcC-----CCCCCCCcHHHHHHHhhhcC
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYK-AEMEECVDLIMEELEKRKITNAYTLAYQSRVG-----PVEWLKPYTDETIIKLGQKG 383 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~-~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G-----~~~WL~P~t~d~L~~L~~~G 383 (534)
+||+.+||.- |+.. ..+++..+.+.++.+ + .++..||-|+.= ....-.|++.++|++|.++|
T Consensus 2 aillv~fGS~--------~~~~~~~~~~i~~~l~~~~p--~--~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGTS--------YPTAEKTIDAIEDKVRAAFP--D--YEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCCC--------CHHHHHHHHHHHHHHHHHCC--C--CeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 5899999972 3322 344455555555543 1 358999988541 11134699999999999999
Q ss_pred CceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHh
Q 009474 384 VKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 444 (534)
Q Consensus 384 ~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~ 444 (534)
+++|+|+|+-++..+ | ..||..+..+.. .+...+...+.|..+++-++.+++.+.+.
T Consensus 70 ~~~V~V~Pl~l~~G~-e-~~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~~~v~~al~~~ 126 (127)
T cd03412 70 YTEVIVQSLHIIPGE-E-YEKLKREVDAFK--KGFKKIKLGRPLLYSPEDYEEVAAALKDQ 126 (127)
T ss_pred CCEEEEEeCeeECcH-H-HHHHHHHHHHHh--CCCceEEEccCCCCCHHHHHHHHHHHHhh
Confidence 999999999877753 3 467766666543 66778999999999999998888877653
No 33
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.19 E-value=2.2e-05 Score=67.83 Aligned_cols=99 Identities=19% Similarity=0.328 Sum_probs=73.6
Q ss_pred EEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEE
Q 009474 311 IFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 390 (534)
Q Consensus 311 LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 390 (534)
+|+.+||.... .....+.+.++.+.++.+. .++..+|-.. ..|++++++++|.++|+++|+|+
T Consensus 2 ivlv~hGS~~~-------~~~~~~~~l~~~l~~~~~~----~~v~~afle~------~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRDP-------RAAEALEALAERLRERLPG----DEVELAFLEL------AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCCH-------HHHHHHHHHHHHHHhhCCC----CcEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEEE
Confidence 78999998533 2445666667777766532 2478888641 36999999999999999999999
Q ss_pred ccccch-hhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCC
Q 009474 391 PISFVS-EHIETLEEIDVEYKELALKSGIEKWGRVPALG 428 (534)
Q Consensus 391 PigFvs-DhlETL~EIdiE~rela~e~G~~~~~rvp~LN 428 (534)
|+.++. .|. ..||..+.+++..+....++.+.+.||
T Consensus 65 Plfl~~G~h~--~~dip~~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 65 PLFLLAGGHV--KEDIPAALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred eeEeCCCccc--cccHHHHHHHHHHHCCCeEEEecCCCC
Confidence 987554 776 578887777776666666788888875
No 34
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.16 E-value=4.3e-06 Score=72.64 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccc-hhhhhhhHhHHHH
Q 009474 330 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV-SEHIETLEEIDVE 408 (534)
Q Consensus 330 Y~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFv-sDhlETL~EIdiE 408 (534)
....+++.++.+.++++ . ++..+|-.. .+|++.+++++|.++|.++|+|+|+.++ +-|. -.||...
T Consensus 8 ~~~~~~~la~~l~~~~~-~----~v~~~fle~------~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~--~~DIp~~ 74 (105)
T PF01903_consen 8 ANAELEDLADRLRERLP-V----PVEVAFLEF------AEPSLEEALERLVAQGARRIVVVPYFLFPGYHV--KRDIPEA 74 (105)
T ss_dssp HHHHHHHHHHHHHHHTS-S----EEEEEESSC------CCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHH--HCHHHHH
T ss_pred HHHHHHHHHHHHHhhcC-C----eEEEEEEec------CCCCHHHHHHHHHHcCCCeEEEEeeeecCccch--HhHHHHH
Confidence 56777788888888876 3 488888541 3699999999999999999999997643 3555 5678777
Q ss_pred HHHHHHHcCCeeEEEcCCCCCCHHHHHHHHH
Q 009474 409 YKELALKSGIEKWGRVPALGCEATFISDLAD 439 (534)
Q Consensus 409 ~rela~e~G~~~~~rvp~LNdsp~fI~~Lad 439 (534)
.++...+.....+.+.++||.||.++++|+|
T Consensus 75 l~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 75 LAEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp HCHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 8888778887789999999999999998875
No 35
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=97.95 E-value=5.6e-05 Score=65.32 Aligned_cols=90 Identities=21% Similarity=0.299 Sum_probs=59.6
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHH-HHHHHHHH
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGS-SLRLLESI 264 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM-RY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs-~~~~l~e~ 264 (534)
||+..... +..+.+.+.|.++.....|+.|+ ....|++++++++|.++|+++|+++|+| ...|. +.+++.+.
T Consensus 8 GS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlf-----l~~G~h~~~dip~~ 81 (101)
T cd03416 8 GSRDPRAA-EALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLF-----LLAGGHVKEDIPAA 81 (101)
T ss_pred CCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeE-----eCCCccccccHHHH
Confidence 44443222 34445666666554456688885 6779999999999999999999999997 33444 44567665
Q ss_pred HHhcc-ccCCceEEEeCCC
Q 009474 265 FREDE-YLVNMQHTVIPSW 282 (534)
Q Consensus 265 ~~~~~-~~~~i~i~~I~~~ 282 (534)
++... .++.+++++.+++
T Consensus 82 ~~~~~~~~~~~~i~~~~pl 100 (101)
T cd03416 82 LAAARARHPGVRIRYAPPL 100 (101)
T ss_pred HHHHHHHCCCeEEEecCCC
Confidence 55432 3456667766554
No 36
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=97.73 E-value=0.00031 Score=73.43 Aligned_cols=147 Identities=19% Similarity=0.248 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccc-----cchhhhhhhHhHHHHH
Q 009474 335 EECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS-----FVSEHIETLEEIDVEY 409 (534)
Q Consensus 335 ~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig-----FvsDhlETL~EIdiE~ 409 (534)
++-++++.++|+.. +.++.+++ |. ..|+++|++++|.++|+++++++|.. +++.-. ..++ .
T Consensus 76 ~~q~~~L~~~L~~~--~~~V~~am--ry-----~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~--~~~~---~ 141 (320)
T COG0276 76 RAQAAALEERLDLP--DFKVYLAM--RY-----GPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSY--VDEL---A 141 (320)
T ss_pred HHHHHHHHHHhCCC--CccEEEee--cC-----CCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHH--HHHH---H
Confidence 44566777777522 22355554 33 37999999999999999999999974 222333 3333 2
Q ss_pred HHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCCC--cccc--cccccccccccCcc--hhhhhhccccccccCC
Q 009474 410 KELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG--AMAV--SNLEARQSLVPLGS--VEELLATYDSKRNELP 483 (534)
Q Consensus 410 rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~~--~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~ 483 (534)
+.+.+..+...+..|+...++|.||+++|+.|.+.++..+ .... |.+...++..-.|. ..+..+..+.-.-.|+
T Consensus 142 ~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg 221 (320)
T COG0276 142 RALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALG 221 (320)
T ss_pred HHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHcC
Confidence 2222223445799999999999999999999999998875 1111 44433333333342 2222223333334566
Q ss_pred CCCcccccCccc
Q 009474 484 PPVTVWEWGWTR 495 (534)
Q Consensus 484 ~~~~~~~~g~~~ 495 (534)
-+.+.+.+||-.
T Consensus 222 ~~~~~~~~~~QS 233 (320)
T COG0276 222 LPEEEYDLTFQS 233 (320)
T ss_pred CCchheeEEeec
Confidence 667777777765
No 37
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.67 E-value=0.00052 Score=71.90 Aligned_cols=108 Identities=23% Similarity=0.394 Sum_probs=72.7
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEeee-------cCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHH--H
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMR-------YWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGS--S 257 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMR-------Y~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs--~ 257 (534)
|.|-....++.+++|.+.|.-. .-.+.++|. ...|+++++|+++.++|+++|+++|.. +++.+ .
T Consensus 207 gd~Y~~~~~~t~~~l~~~l~~~--~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~-----Fv~D~lEt 279 (333)
T PRK00035 207 GDPYQQQCEETARLLAEALGLP--DEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPG-----FVSDHLET 279 (333)
T ss_pred CCChHHHHHHHHHHHHHHhCCC--CCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCe-----eeccchhH
Confidence 4554555666778888877421 123455554 368999999999999999999999983 33333 2
Q ss_pred HHHHHHHHHhccccCCc-eEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 009474 258 LRLLESIFREDEYLVNM-QHTVIPSWYQREGYITAMANLIEKELQ 301 (534)
Q Consensus 258 ~~~l~e~~~~~~~~~~i-~i~~I~~~~d~p~yI~Ala~~I~~~l~ 301 (534)
..++....++.....+. .+..++...++|.++++++++|++.+.
T Consensus 280 l~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~l~~~v~~~~~ 324 (333)
T PRK00035 280 LEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEALADLVRENLQ 324 (333)
T ss_pred HHHHHHHHHHHHHHcCCceEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 23332222211111122 578899999999999999999998764
No 38
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.56 E-value=0.001 Score=69.79 Aligned_cols=105 Identities=22% Similarity=0.370 Sum_probs=74.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHH
Q 009474 186 GGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 258 (534)
Q Consensus 186 ggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM--RY~-----~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~ 258 (534)
.|+|-.....+.+++|.++|.. ..+ +..++ +++ .|+++++|++|.++|+++|+|+|. -|..-...+.+
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~-~~~--~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~--gFv~D~lETl~ 279 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGF-PNE--YRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI--GFTADHLETLY 279 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCC-CCC--eEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC--cccccchhHHH
Confidence 5788888888889999988862 123 33444 555 899999999999999999999998 12221111221
Q ss_pred HHHH----HHHHhccccCCce-EEEeCCCCCCHHHHHHHHHHHHHHH
Q 009474 259 RLLE----SIFREDEYLVNMQ-HTVIPSWYQREGYITAMANLIEKEL 300 (534)
Q Consensus 259 ~~l~----e~~~~~~~~~~i~-i~~I~~~~d~p~yI~Ala~~I~~~l 300 (534)
+ +. +.+++ .+.+ +..++...+||.||++++++|++.+
T Consensus 280 e-i~~e~~~~~~~----~G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 280 E-IDEEYREVAED----AGGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred h-hhHHHHHHHHH----cCCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 1 21 22222 2234 8899999999999999999998864
No 39
>PLN02449 ferrochelatase
Probab=97.53 E-value=0.001 Score=73.22 Aligned_cols=112 Identities=17% Similarity=0.324 Sum_probs=79.1
Q ss_pred CCCchHHHHHHHHHHHHHHHhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHH-
Q 009474 186 GGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSS- 257 (534)
Q Consensus 186 ggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM--RY~-----~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~- 257 (534)
.|.|-...+++.+++|.+.|...+...++.+++ |.| .|+++|+|++|.++|+++|+|+|. .+.+-+.
T Consensus 294 ~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPi-----gFvSDhiE 368 (485)
T PLN02449 294 AGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPI-----SFVSEHIE 368 (485)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECC-----cccccchH
Confidence 367888888889999999997544222344455 455 899999999999999999999998 3333222
Q ss_pred -HHHHHHHHHhccccCCc-eEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 009474 258 -LRLLESIFREDEYLVNM-QHTVIPSWYQREGYITAMANLIEKELQN 302 (534)
Q Consensus 258 -~~~l~e~~~~~~~~~~i-~i~~I~~~~d~p~yI~Ala~~I~~~l~~ 302 (534)
+.+++-.+++.....++ .+..++...++|.||+++++.|.+.+..
T Consensus 369 TL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 369 TLEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 11222111111111223 4889999999999999999999998864
No 40
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00053 Score=69.41 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=87.8
Q ss_pred EEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
.+|+..||.+.. .+.+..+..+..+.++.... .+..+| .+-.+|+++++++.|..+|+++|+|
T Consensus 4 ~~llvgHGsr~p-------~~~~~~~~~a~~~~~~~~~~----~v~~~f------~e~~~P~l~~~~~al~~~G~~~ivv 66 (245)
T COG2138 4 ALLLVGHGSRLP-------RGREVAEAIAARLEERGDFP----PVRVAF------LELAEPSLREALQALVARGVDRIVV 66 (245)
T ss_pred ceeeeecCCCCc-------cHHHHHHHHHHHHHhhcCCc----cchhHH------HHhcCCCHHHHHHHHHhcCCCeEEE
Confidence 478899998643 24455555555555554321 345555 3445799999999999999999999
Q ss_pred EccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCCC
Q 009474 390 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 449 (534)
Q Consensus 390 vPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~~ 449 (534)
||. |++.-..|..||-.+......+++...+. .+|.|+.+.+.+.+++.+......
T Consensus 67 VPl-fl~~g~H~~~DIP~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~~~ 122 (245)
T COG2138 67 VPL-FLAAGYHTKRDIPAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGADEA 122 (245)
T ss_pred eeh-hhccCchhhcccHHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhccccc
Confidence 995 44544555899999998888787765443 799999999999999988776544
No 41
>PRK02395 hypothetical protein; Provisional
Probab=97.46 E-value=0.0012 Score=67.70 Aligned_cols=113 Identities=10% Similarity=-0.016 Sum_probs=76.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 264 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~ 264 (534)
|-||+....+.+...++.+.|.++...-.|+.||--..|+++++++++. .++|+|+|+|- ++-.+..+++.+.
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL----~~G~H~~~DIp~~ 214 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFI----ADGFHTQEDIPED 214 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeec----ccCcchHhHHHHH
Confidence 6677654444444444555554432222577777668999999999874 58999999983 3344455566554
Q ss_pred HHhcc------ccC----CceEEEeCCCCCCHHHHHHHHHHHHHHHHhCC
Q 009474 265 FREDE------YLV----NMQHTVIPSWYQREGYITAMANLIEKELQNFD 304 (534)
Q Consensus 265 ~~~~~------~~~----~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~ 304 (534)
..... .++ ++.+.+.++.+.||.+++++++++++++...+
T Consensus 215 ~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~~ 264 (279)
T PRK02395 215 MGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADVG 264 (279)
T ss_pred HHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCcc
Confidence 43221 123 45678899999999999999999999886553
No 42
>PRK12435 ferrochelatase; Provisional
Probab=97.43 E-value=0.0014 Score=68.53 Aligned_cols=111 Identities=15% Similarity=0.290 Sum_probs=73.7
Q ss_pred CchHHHHHHHHHHHHHHhccc--cCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccc--cchhhhhhhH
Q 009474 328 DPYKAEMEECVDLIMEELEKR--KITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS--FVSEHIETLE 403 (534)
Q Consensus 328 DpY~~q~~eTa~~v~e~Lg~~--~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig--FvsDhlETL~ 403 (534)
.|=...-++-++++.++|+.. +...++.+++.- ..|+++|+|++|.++|+++|+++|.. |.+=...+..
T Consensus 53 SPL~~~T~~qa~~L~~~L~~~~~~~~~~V~~amry-------~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~ 125 (311)
T PRK12435 53 SPLAKITDEQAKALEKALNEVQDEVEFKLYLGLKH-------IEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYN 125 (311)
T ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCceEEEEecC-------CCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHH
Confidence 444444445566677776421 111123344322 27999999999999999999999954 4433334444
Q ss_pred hHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 009474 404 EIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV 448 (534)
Q Consensus 404 EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~ 448 (534)
|. .++...+.+...+..++...++|.||+++++.|.+.+...
T Consensus 126 ~~---~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~ 167 (311)
T PRK12435 126 KR---AKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQI 167 (311)
T ss_pred HH---HHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHc
Confidence 42 3333344555579999999999999999999999888654
No 43
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.22 E-value=0.0011 Score=58.35 Aligned_cols=60 Identities=28% Similarity=0.460 Sum_probs=48.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 009474 184 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLY 246 (534)
Q Consensus 184 IgggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLy 246 (534)
+|=||+... .+.-+.|++.+++++. ..|++|+-=+.|+++++++++.++|+++|+++|||
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~ 65 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLM 65 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehh
Confidence 356777765 3566678888876543 56888886699999999999999999999999997
No 44
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.21 E-value=0.00016 Score=67.78 Aligned_cols=28 Identities=39% Similarity=0.324 Sum_probs=24.9
Q ss_pred cccCccchhhhhhhhHHHHHHHHHHHHH
Q 009474 489 WEWGWTRSAETWNGRAAMLAVLVLLVLE 516 (534)
Q Consensus 489 ~~~g~~~~aE~~NGR~AM~G~~~~~~~e 516 (534)
..+.+++.+|++|||+|||||+..++.|
T Consensus 128 ~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 128 EEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp HSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888999999999999999999877
No 45
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.19 E-value=0.00011 Score=68.92 Aligned_cols=34 Identities=44% Similarity=0.541 Sum_probs=30.3
Q ss_pred ccCccchhhhhhhhHHHHHHHHHHHHHHHhCcch
Q 009474 490 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGF 523 (534)
Q Consensus 490 ~~g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~ 523 (534)
.++|...+|++|||+||+||+..++.|+.++.+.
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~ 58 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPG 58 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTS
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCc
Confidence 5677889999999999999999999999988643
No 46
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=96.94 E-value=0.0066 Score=63.63 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccc--cchhhhhhhH
Q 009474 326 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS--FVSEHIETLE 403 (534)
Q Consensus 326 ~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig--FvsDhlETL~ 403 (534)
.|.|=...-++-++++.++|+....+..+..+|. . ..|+++|++++|.++|+++|+|+|.. |..=...+..
T Consensus 63 ~~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~amr--y-----~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~ 135 (316)
T PF00762_consen 63 GGSPLNEITRRQAEALQQRLDERGVDVEVYYAMR--Y-----GPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYL 135 (316)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEES--S-----SSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCeeEEEEec--c-----CCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHH
Confidence 4556555555666777777753211112455552 2 37999999999999999999999975 3332222222
Q ss_pred hHHHHHHHHHHH-cCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCCC
Q 009474 404 EIDVEYKELALK-SGIEKWGRVPALGCEATFISDLADAVIESLPYVG 449 (534)
Q Consensus 404 EIdiE~rela~e-~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~~ 449 (534)
| +..+...+ .....++.++...+||.||+++++.|.+++...+
T Consensus 136 ~---~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~~ 179 (316)
T PF00762_consen 136 D---EVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALERFP 179 (316)
T ss_dssp H---HHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS-
T ss_pred H---HHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 2 13333333 3445689999999999999999999999998763
No 47
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=96.70 E-value=0.0012 Score=66.91 Aligned_cols=33 Identities=33% Similarity=0.320 Sum_probs=30.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 496 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 496 ~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
..|+-|||+||+||+..++-|++||+|.++++.
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~ 234 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLL 234 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 479999999999999999999999999998873
No 48
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=96.63 E-value=0.0011 Score=66.79 Aligned_cols=34 Identities=35% Similarity=0.331 Sum_probs=31.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhcc
Q 009474 496 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGI 529 (534)
Q Consensus 496 ~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g~ 529 (534)
..|+-|||+||++|+..+.-+++||+|.+++++-
T Consensus 162 ~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 162 VKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 5899999999999999999999999999998764
No 49
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.56 E-value=0.0016 Score=64.41 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=27.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCcchhh
Q 009474 496 SAETWNGRAAMLAVLVLLVLEVTTGEGFLH 525 (534)
Q Consensus 496 ~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~ 525 (534)
.+|+-|||+||+|++..+.-|++||+|++.
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 479999999999999999999999999873
No 50
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=96.23 E-value=0.0032 Score=63.68 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=29.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHH-HHhCcchhhhhc
Q 009474 496 SAETWNGRAAMLAVLVLLVLE-VTTGEGFLHQWG 528 (534)
Q Consensus 496 ~aE~~NGR~AM~G~~~~~~~e-~~tg~~~~~~~g 528 (534)
..|+-|||+||+||+..++-| ++||+|.+++++
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~ 221 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 221 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHH
Confidence 479999999999999999988 579999999874
No 51
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=96.21 E-value=0.003 Score=64.43 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+..|+-|||+||++|+..++-+++||+|.++++.
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~ 240 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 4689999999999999999999999999998864
No 52
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.19 E-value=0.0028 Score=64.70 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=28.8
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhh
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQ 526 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~ 526 (534)
..+|+.|||+||+|++..++.|++++.|++.+
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 46899999999999999999999999888754
No 53
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.02 E-value=0.003 Score=64.04 Aligned_cols=34 Identities=38% Similarity=0.431 Sum_probs=31.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+..|+-|||+||++|+..++-+++||+|.++++.
T Consensus 201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~ 234 (250)
T PLN00101 201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLL 234 (250)
T ss_pred HHHHHhhcchHHHHHhhHhheehccCCChHHHHH
Confidence 4589999999999999999999999999998873
No 54
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.00 E-value=0.0042 Score=63.42 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=30.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhh
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQW 527 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~ 527 (534)
+..|+-|||+||++++..++.|++||+|.++++
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L 243 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNL 243 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHH
Confidence 358999999999999999999999999999886
No 55
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=95.99 E-value=0.0057 Score=60.31 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=24.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCc
Q 009474 496 SAETWNGRAAMLAVLVLLVLEVTTGE 521 (534)
Q Consensus 496 ~aE~~NGR~AM~G~~~~~~~e~~tg~ 521 (534)
..|+-|||+||||+...+.-|+++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 47999999999999999999999985
No 56
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=95.98 E-value=0.077 Score=48.98 Aligned_cols=58 Identities=21% Similarity=0.452 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEeee--cC-----CCCHHHHHHHHHHcCCCEEEEEec-C
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMR--YW-----HPFTEEAIEQIKRDGITKLVVLPL-Y 246 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMR--Y~-----~P~I~eaL~~L~~~G~~rIvvlPL-y 246 (534)
|.|-...+.+.+++|.++|... .-.+..||. .+ .|+++++|+++.++|+++|+|+|. |
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~--~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF 101 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLP--FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGF 101 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcc
Confidence 3455667778888898888521 123455553 32 999999999999999999999999 5
No 57
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=95.94 E-value=0.0048 Score=62.33 Aligned_cols=34 Identities=35% Similarity=0.343 Sum_probs=31.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+.+|+-|||+||++|+..++-+++||+|.++++.
T Consensus 198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~ 231 (244)
T PLN00097 198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLF 231 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHH
Confidence 4589999999999999999999999999998873
No 58
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=95.90 E-value=0.0057 Score=62.59 Aligned_cols=34 Identities=41% Similarity=0.458 Sum_probs=31.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+..|+-|||+||++++..++-+++||+|.++++.
T Consensus 216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~ 249 (267)
T PLN00098 216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLM 249 (267)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHH
Confidence 3589999999999999999999999999999873
No 59
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=95.89 E-value=0.0058 Score=63.89 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=30.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 496 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 496 ~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
..|+-|||+||+|++..++-+++||+|.++++.
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~ 307 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLV 307 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHH
Confidence 479999999999999999999999999998863
No 60
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=95.81 E-value=0.0066 Score=62.63 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=31.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+..|+-|||+||++++..++.+++||+|.++.+.
T Consensus 236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~ 269 (286)
T PLN00187 236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 269 (286)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4689999999999999999999999999988763
No 61
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=95.78 E-value=0.027 Score=57.70 Aligned_cols=105 Identities=20% Similarity=0.314 Sum_probs=68.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHH-HHHHH--
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGS-SLRLL-- 261 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs-~~~~l-- 261 (534)
|=|+|.... .--.+|+..|++.+. -.|++|.-=+.|.+++++++|++.|+++|.++||. ...|. +.+++
T Consensus 148 GHGt~h~an--~~Y~~l~~~l~~~~~-~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlM-----lVAGdHa~nDmaG 219 (262)
T PF06180_consen 148 GHGTPHPAN--AAYSALQAMLKKHGY-PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLM-----LVAGDHAKNDMAG 219 (262)
T ss_dssp E---SCHHH--HHHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEES-----SS--HHHHCCCCS
T ss_pred eCCCCCCcc--HHHHHHHHHHHhCCC-CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecc-----cccchhhhhhhcC
Confidence 556666543 234568888887542 35899998899999999999999999999999996 34443 33332
Q ss_pred ------HHHHHhccccCCceE-EEeCCCCCCHHHHHHHHHHHHHHHH
Q 009474 262 ------ESIFREDEYLVNMQH-TVIPSWYQREGYITAMANLIEKELQ 301 (534)
Q Consensus 262 ------~e~~~~~~~~~~i~i-~~I~~~~d~p~yI~Ala~~I~~~l~ 301 (534)
+..+++.. +++ .++...+++|++.+.+.++|+++++
T Consensus 220 de~dSWks~L~~~G----~~v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 220 DEEDSWKSRLEAAG----FEVTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp SSTTSHHHHHHHTT-----EEEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CCcchHHHHHHHCC----CEEEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 33443322 233 3478899999999999999998863
No 62
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=95.78 E-value=0.0058 Score=62.01 Aligned_cols=30 Identities=47% Similarity=0.469 Sum_probs=27.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchh
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFL 524 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~ 524 (534)
..+|+.|||+||+|++..++.|++|+.|++
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 368999999999999999999999999876
No 63
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=95.50 E-value=0.1 Score=54.50 Aligned_cols=179 Identities=16% Similarity=0.271 Sum_probs=110.3
Q ss_pred HcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCC--ceEE
Q 009474 234 RDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPE--QVMI 311 (534)
Q Consensus 234 ~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~--~~~L 311 (534)
+++-+.|+++-|= -..|.+.+.+.+.+.+... ++--++.| +.+.|.+.+++...|. + ..
T Consensus 35 ~k~ktgilllNmG---GP~~lddV~~FL~rLfaD~------DiI~Lp~~---------~Q~~lakfIak~RtPKvqe-~Y 95 (395)
T KOG1321|consen 35 KKPKTGILLLNMG---GPETLDDVQDFLYRLFADP------DIIPLPAF---------LQKTLAKFIAKRRTPKVQE-QY 95 (395)
T ss_pred cCCCceEEEEcCC---CCcchhhHHHHHHHHhcCC------CeeeCCHH---------HHhhHHHHHHHhcCchHHH-HH
Confidence 3456777777772 3556666666666665321 22333332 2333444444332221 0 00
Q ss_pred EEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhcccc---CCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEE
Q 009474 312 FFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRK---ITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 388 (534)
Q Consensus 312 LFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~---~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 388 (534)
+.| ..|.|-..--+.-++.+.+.|.... ..+.+.++|.- -.|-|+|+++++.+.|++++|
T Consensus 96 ---------~~I-GGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY-------~~PlTEea~~qikkd~v~r~V 158 (395)
T KOG1321|consen 96 ---------REI-GGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY-------AHPLTEEALEQIKKDGVTRAV 158 (395)
T ss_pred ---------Hhc-cCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeee-------cCcccHHHHHHHHhcCceeEE
Confidence 112 3444433333334555555553221 11234555532 379999999999999999999
Q ss_pred EEccc--cc---hhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCCCcc
Q 009474 389 AVPIS--FV---SEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAM 451 (534)
Q Consensus 389 VvPig--Fv---sDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~~~~ 451 (534)
++|-. |- +... |.+|-..+++.-.+.+++ +..++--..++.+|+++|+.|.+.|+.-+..
T Consensus 159 afsqYPQyS~sTsGSS--ln~l~r~~r~~~~~~~~~-wsiIdrW~t~~glIkafA~~I~keL~~F~~~ 223 (395)
T KOG1321|consen 159 AFSQYPQYSCSTSGSS--LNELWRQFREDGYERDIK-WSIIDRWPTREGLIKAFAENIEKELQTFPEP 223 (395)
T ss_pred eeccCCceeeecCccc--HHHHHHHHHhcCcccCCc-eEeeccccccchHHHHHHHHHHHHHHhcCCc
Confidence 99853 32 2444 677766777777777775 8899999999999999999999999876664
No 64
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=95.12 E-value=0.014 Score=59.75 Aligned_cols=32 Identities=38% Similarity=0.403 Sum_probs=28.5
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhCcchhh
Q 009474 494 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 525 (534)
Q Consensus 494 ~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~ 525 (534)
-..+|+.|||+||+|++..++.|++++.|++.
T Consensus 100 ~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 100 FAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 35799999999999999999999999887754
No 65
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=94.62 E-value=0.015 Score=58.86 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=27.6
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhCcchh
Q 009474 494 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFL 524 (534)
Q Consensus 494 ~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~ 524 (534)
...+|+.|||+||+|++..++.|++++.|+.
T Consensus 82 ~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~ 112 (244)
T PLN00097 82 FVQAELMHARWAMLGLAGCVAPELLTKIGMA 112 (244)
T ss_pred HHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence 3468999999999999999999999988763
No 66
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=94.44 E-value=0.018 Score=58.64 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=28.6
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhCcchhh
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 525 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~ 525 (534)
+...+|+.|||+||+|++..++.|+++|...++
T Consensus 94 ~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred HHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 345689999999999999999999999886654
No 67
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=94.42 E-value=0.015 Score=59.38 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=27.2
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhCcch
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGF 523 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~ 523 (534)
+...+|+.|||+||+|++..++.|++++.|+
T Consensus 90 ~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 90 RNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 3346899999999999999999999987766
No 68
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=94.38 E-value=0.018 Score=59.45 Aligned_cols=29 Identities=45% Similarity=0.438 Sum_probs=25.7
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhCc
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTTGE 521 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~tg~ 521 (534)
|-..+|+.|||+||+|++..++.|+++|.
T Consensus 132 r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 132 RFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 44579999999999999999999998764
No 69
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=94.04 E-value=0.035 Score=56.54 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=25.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcch
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGF 523 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~ 523 (534)
..+|+.|||+||+|++..++.|++++.|+
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 35899999999999999999999887664
No 70
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=93.83 E-value=0.039 Score=57.79 Aligned_cols=31 Identities=32% Similarity=0.221 Sum_probs=27.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhCcchh
Q 009474 494 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFL 524 (534)
Q Consensus 494 ~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~ 524 (534)
-..+|+.|||+||+|++..++.|++++.|..
T Consensus 148 ~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 148 YFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 3469999999999999999999998876654
No 71
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=93.50 E-value=0.037 Score=56.38 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=30.3
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhcc
Q 009474 494 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGI 529 (534)
Q Consensus 494 ~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g~ 529 (534)
-+.+|+-|||+||++|+..++ +..||+|-|+.+|+
T Consensus 221 lk~kEIKnGRLAMlA~lGf~~-Qa~~g~~p~~~l~~ 255 (255)
T PLN00170 221 LKLAEIKHARLAMVAMLIFYF-EAGQGKTPLGALGL 255 (255)
T ss_pred HHHHHHhhhHHHHHHHHhHhe-eeccCCCchhhhcC
Confidence 356999999999999998775 55899999999985
No 72
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=92.04 E-value=1.1 Score=42.11 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccc
Q 009474 333 EMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS 393 (534)
Q Consensus 333 q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig 393 (534)
.-++-++++.++|+.......+..++ +-..|+++|+|++|.++|+++|+++|..
T Consensus 69 ~t~~q~~~l~~~L~~~~~~~~v~~am-------ry~~P~i~~~l~~l~~~g~~~iivlPl~ 122 (159)
T cd03411 69 ITRAQAEALEKALDERGIDVKVYLAM-------RYGPPSIEEALEELKADGVDRIVVLPLY 122 (159)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEehH-------hcCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 33445666667664211111233332 1237999999999999999999999975
No 73
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=91.39 E-value=0.12 Score=52.38 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHh
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTT 519 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~t 519 (534)
..+|+.|||+||+|++..++.|+++
T Consensus 74 r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 74 QEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHhhcchHHHHHHhhhhHHHHhc
Confidence 3589999999999999999999863
No 74
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=91.00 E-value=2.5 Score=42.39 Aligned_cols=103 Identities=15% Similarity=0.273 Sum_probs=73.5
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHH-HHHHH----
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGS-SLRLL---- 261 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs-~~~~l---- 261 (534)
.++.+..-. .|.--|.+.|.+ .|++|--=+-|.++.+++.|++.|++++-++||. .++|- +.++.
T Consensus 148 ~h~s~~~Ya----cLd~~~~~~~f~-~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlM-----lvAG~Ha~nDMasdd 217 (265)
T COG4822 148 DHHSNAAYA----CLDHVLDEYGFD-NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLM-----LVAGDHAKNDMASDD 217 (265)
T ss_pred CccHHHHHH----HHHHHHHhcCCC-ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeE-----Eeechhhhhhhcccc
Confidence 345554433 366666665432 6899999999999999999999999999999995 34443 33333
Q ss_pred ----HHHHHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 009474 262 ----ESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQN 302 (534)
Q Consensus 262 ----~e~~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~ 302 (534)
.+.++.... .+ -.++...+..|++...+.++|+.++..
T Consensus 218 edswk~il~~~G~--~v-~~~l~GLGE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 218 EDSWKNILEKNGF--KV-EVYLHGLGENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred hHHHHHHHHhCCc--ee-EEEeecCCCcHHHHHHHHHHHHHHHhh
Confidence 334433221 11 356889999999999999999999865
No 75
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=90.34 E-value=0.12 Score=52.54 Aligned_cols=27 Identities=37% Similarity=0.266 Sum_probs=23.7
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHh
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTT 519 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~t 519 (534)
+-..+|+.|||+||+|++..++.|+++
T Consensus 81 ~~r~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 81 RYKESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred HHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence 334689999999999999999999864
No 76
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=90.13 E-value=0.22 Score=49.47 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=25.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhCcc
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTTGEG 522 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~ 522 (534)
|-..+|+-|||+||++++..++.|.++.-|
T Consensus 74 ~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 74 WFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 334699999999999999999999876544
No 77
>PRK10481 hypothetical protein; Provisional
Probab=86.02 E-value=11 Score=38.00 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred eEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHHHHHH
Q 009474 213 KVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAM 292 (534)
Q Consensus 213 ~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI~Al 292 (534)
.|.++=++-.|.+.+.+++|.++|++-|+++..- .+..-...+ ..+ ..| .+.| +.++.|+
T Consensus 67 ~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctg----dfp~l~a~r---~~l----~~P---~~~i------~~lv~Al 126 (224)
T PRK10481 67 QVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTG----EFPSLTARN---AIL----LEP---SRIL------PPLVAAI 126 (224)
T ss_pred EEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecC----CCCCccccC---ccc----cCc---hhhH------HHHHHHh
Confidence 5788888899999999999999999999998762 110000000 000 001 1111 4455444
Q ss_pred HHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCC--
Q 009474 293 ANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKP-- 370 (534)
Q Consensus 293 a~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P-- 370 (534)
. ...++.|+ -||..++.+..+...+. |.. ..++-.| +|..+
T Consensus 127 ~-----------~g~riGVi---------------tP~~~qi~~~~~kw~~~-G~~-----v~~~~as-----py~~~~~ 169 (224)
T PRK10481 127 V-----------GGHQVGVI---------------VPVEEQLAQQAQKWQVL-QKP-----PVFALAS-----PYHGSEE 169 (224)
T ss_pred c-----------CCCeEEEE---------------EeCHHHHHHHHHHHHhc-CCc-----eeEeecC-----CCCCCHH
Confidence 4 11344443 47999998888777765 532 2333222 23222
Q ss_pred cHHHHHHHhhhcCCceEEEEccccchhhhhhhHh
Q 009474 371 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEE 404 (534)
Q Consensus 371 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E 404 (534)
.+.++.++|...|..-|++-|.||..+|.+.+++
T Consensus 170 ~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~ 203 (224)
T PRK10481 170 ELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQK 203 (224)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHH
Confidence 4677778888899999999999999977655554
No 78
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=82.76 E-value=34 Score=37.05 Aligned_cols=212 Identities=14% Similarity=0.141 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEeeec----CCCCHHHHHHHHHHcCC-CEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 193 ITDAQAEELRKSLWEKNLPAKVYVGMRY----WHPFTEEAIEQIKRDGI-TKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 193 ~T~~qa~~L~~~L~~~g~~v~V~~AMRY----~~P~I~eaL~~L~~~G~-~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
++++.+..+...--+.|+.+ |..|+-| +++++..||.+ |+ +++.+-.=+|-+-.-.....-+.+.+.++.
T Consensus 31 id~~~~~~~i~~aie~GiNy-idTA~~Yh~g~sE~~lgkaL~~----~~Rekv~LaTKlp~~~~~~~edm~r~fneqLek 105 (391)
T COG1453 31 IDEENANETIDYAIEHGINY-IDTAWPYHGGESEEFLGKALKD----GYREKVKLATKLPSWPVKDREDMERIFNEQLEK 105 (391)
T ss_pred ccHHHHHHHHHHHHHcCCce-EeecccccCCCchHHHHHHhhh----cccceEEEEeecCCccccCHHHHHHHHHHHHHH
Confidence 45555555444433568876 7888888 45555555554 54 456666566532122222222234455543
Q ss_pred ccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEE-EEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhc
Q 009474 268 DEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMI-FFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE 346 (534)
Q Consensus 268 ~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~L-LFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg 346 (534)
.... -+++-.|..... +.+-....--..+++++.....++.. =||+||.+.- ...+...
T Consensus 106 l~~D-y~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~----------------~~~iv~a-- 165 (391)
T COG1453 106 LGTD-YIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEV----------------FKEIVDA-- 165 (391)
T ss_pred hCCc-hhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHH----------------HHHHHhc--
Confidence 3210 011111222222 22322222223444544433344433 4999996422 2223322
Q ss_pred cccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccc----cchhhhhhhHhHHHHHH----------HH
Q 009474 347 KRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS----FVSEHIETLEEIDVEYK----------EL 412 (534)
Q Consensus 347 ~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig----FvsDhlETL~EIdiE~r----------el 412 (534)
.+|+++ |.+.--..|-.....+.|+...++|. .|+|+-|. .+..-=|++.+|-.++- ..
T Consensus 166 -----~~~dfv-qlq~ny~d~~n~~~~~~l~~A~~~~~-gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~ 238 (391)
T COG1453 166 -----YPWDFV-QLQYNYIDQKNQAGTEGLKYAASKGL-GIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRY 238 (391)
T ss_pred -----CCcceE-EeeeeeeccchhcccHHHHHHHhCCC-cEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHH
Confidence 236666 66665555555655678888888874 66666442 33333344444433331 12
Q ss_pred HHHcCCeeEEEcCCCCCCHHHHHHH
Q 009474 413 ALKSGIEKWGRVPALGCEATFISDL 437 (534)
Q Consensus 413 a~e~G~~~~~rvp~LNdsp~fI~~L 437 (534)
+..+. +..+.....|+-..+.+-|
T Consensus 239 ~~shp-~V~~vlsGm~~~~~l~enL 262 (391)
T COG1453 239 LLSHP-EVTTVLSGMNTPEQLEENL 262 (391)
T ss_pred HhcCC-CeEEEecCCCCHHHHHHHH
Confidence 22333 2466777777766665544
No 79
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=78.68 E-value=68 Score=31.31 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=68.4
Q ss_pred HHHHcCCCEEEEEecCCcccccc--hHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCc
Q 009474 231 QIKRDGITKLVVLPLYPQFSIST--SGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQ 308 (534)
Q Consensus 231 ~L~~~G~~rIvvlPLyPqyS~~T--tGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~ 308 (534)
.++++|.+-+.++-+.|...... .+...+.++...+.. ++++..+.--.+.+.|.+.+.+.+++..++ +. +
T Consensus 18 ~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~l----gipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~--~ 90 (194)
T cd01994 18 RALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAM----GIPLIRIEISGEEEDEVEDLKELLRKLKEE-GV--D 90 (194)
T ss_pred HHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHc----CCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CC--C
Confidence 44456765444554544422111 111223333333322 234455543348899999999888776543 21 1
Q ss_pred eEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEE
Q 009474 309 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 388 (534)
Q Consensus 309 ~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 388 (534)
.+++ ||-+-+...+-.+.+++++|+.. +-| =|-.+ .++.++++.+.|++-++
T Consensus 91 -~vv~-------------G~i~sd~~~~~~e~~~~~~gl~~------------~~P-LW~~~-~~~ll~e~~~~g~~~~i 142 (194)
T cd01994 91 -AVVF-------------GAILSEYQRTRVERVCERLGLEP------------LAP-LWGRD-QEELLREMIEAGFKAII 142 (194)
T ss_pred -EEEE-------------CccccHHHHHHHHHHHHHcCCEE------------Eec-ccCCC-HHHHHHHHHHcCCeEEE
Confidence 3443 44444444556677888887642 111 16554 45699999999998776
Q ss_pred E
Q 009474 389 A 389 (534)
Q Consensus 389 V 389 (534)
+
T Consensus 143 v 143 (194)
T cd01994 143 I 143 (194)
T ss_pred E
Confidence 4
No 80
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=73.81 E-value=0.61 Score=46.14 Aligned_cols=25 Identities=44% Similarity=0.464 Sum_probs=22.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHH
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEV 517 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~ 517 (534)
+...+|+-|||+||++++..++.|+
T Consensus 63 ~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 63 RLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHHhhcccHHHHhhccceeecc
Confidence 3357999999999999999999886
No 81
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=73.55 E-value=44 Score=33.44 Aligned_cols=134 Identities=13% Similarity=0.191 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCC------
Q 009474 291 AMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP------ 364 (534)
Q Consensus 291 Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~------ 364 (534)
++.+.+.+.+++.+. .+ +++-.||-= ..+...+..+++ +...++... ..+..+|.|....
T Consensus 3 ~~~~~~~~~l~~~~~-~~--vlvfVHGyn--------~~f~~a~~r~aq-l~~~~~~~~--~~i~FsWPS~g~~~~Y~~d 68 (233)
T PF05990_consen 3 AFQAQLNQRLAKSPD-KE--VLVFVHGYN--------NSFEDALRRAAQ-LAHDLGFPG--VVILFSWPSDGSLLGYFYD 68 (233)
T ss_pred HHHHHHHHHHhhCCC-Ce--EEEEEeCCC--------CCHHHHHHHHHH-HHHHhCCCc--eEEEEEcCCCCChhhhhhh
Confidence 456666677765432 33 677799962 235556666665 455565443 3577888886542
Q ss_pred ---CCCCCCcHHHHHHHhhhc-CCceEEEEccccch-hhhhhhHhHHHHHH--HHHHHcCCeeEEEcCCCCCCHHHHHHH
Q 009474 365 ---VEWLKPYTDETIIKLGQK-GVKSLLAVPISFVS-EHIETLEEIDVEYK--ELALKSGIEKWGRVPALGCEATFISDL 437 (534)
Q Consensus 365 ---~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvs-DhlETL~EIdiE~r--ela~e~G~~~~~rvp~LNdsp~fI~~L 437 (534)
..|..|.+.+.|+.|.+. |.++|.++.=+.-+ =-+|+|..+..+.. +.....+ +...+.+=-+...|.+.+
T Consensus 69 ~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~--~viL~ApDid~d~f~~~~ 146 (233)
T PF05990_consen 69 RESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFD--NVILAAPDIDNDVFRSQL 146 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhh--eEEEECCCCCHHHHHHHH
Confidence 457778999999999988 99999999887555 34556777766654 2222322 333443333446666666
Q ss_pred HHH
Q 009474 438 ADA 440 (534)
Q Consensus 438 ad~ 440 (534)
..+
T Consensus 147 ~~~ 149 (233)
T PF05990_consen 147 PDL 149 (233)
T ss_pred HHH
Confidence 543
No 82
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.52 E-value=94 Score=31.90 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=58.0
Q ss_pred CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCccc----------ccchHHHHHHHHHHHHhccccCCceEEEeC
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS----------ISTSGSSLRLLESIFREDEYLVNMQHTVIP 280 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS----------~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~ 280 (534)
+-+|.+|+-=.-|...+-.++.++.|-+=++=+||-|..- ..+.+...+.+..++....++..+.=+...
T Consensus 52 p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs 131 (250)
T COG2861 52 PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGS 131 (250)
T ss_pred CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhh
Confidence 5678899888889999999999999999999999998431 122233344444444433333333334455
Q ss_pred CCCCCHHHHHHHHHHHH
Q 009474 281 SWYQREGYITAMANLIE 297 (534)
Q Consensus 281 ~~~d~p~yI~Ala~~I~ 297 (534)
.|-+++..-+.+.+.++
T Consensus 132 ~~tsn~~aM~~~m~~Lk 148 (250)
T COG2861 132 RFTSNEDAMEKLMEALK 148 (250)
T ss_pred hhcCcHHHHHHHHHHHH
Confidence 67788877777774443
No 83
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=70.92 E-value=1.2e+02 Score=30.27 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=56.7
Q ss_pred CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCccc----------ccchHHHHHHHHHHHHhccccCCceEEEe
Q 009474 210 LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS----------ISTSGSSLRLLESIFREDEYLVNMQHTVI 279 (534)
Q Consensus 210 ~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS----------~~TtGs~~~~l~e~~~~~~~~~~i~i~~I 279 (534)
.+++|.+|+-=..|+..+..+..++.|.+=++-+||=|+-- ..+.....+.+..++........+.-+..
T Consensus 19 Lp~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmG 98 (213)
T PF04748_consen 19 LPFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMG 98 (213)
T ss_dssp SSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-
T ss_pred CCCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 46788999888889999999999999999999999988751 12222222233444433322334555667
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 009474 280 PSWYQREGYITAMANLIEK 298 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~ 298 (534)
..|..++...+.+.+.+++
T Consensus 99 S~~T~~~~~m~~vl~~l~~ 117 (213)
T PF04748_consen 99 SRFTSDREAMRWVLEVLKE 117 (213)
T ss_dssp CCHHC-HHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHH
Confidence 7888999888888755543
No 84
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=70.79 E-value=12 Score=34.53 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEec
Q 009474 282 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQS 360 (534)
Q Consensus 282 ~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQS 360 (534)
.+..+.-.+.+.+.|+..++.. .|++ .||+|+||-| .-|.-|. ++.|++.|=..+...++-.-|-+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~K-pLVlSfHG~t-----GtGKn~v------~~liA~~ly~~G~~S~~V~~f~~ 92 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPRK-PLVLSFHGWT-----GTGKNFV------SRLIAEHLYKSGMKSPFVHQFIA 92 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCCC-CEEEEeecCC-----CCcHHHH------HHHHHHHHHhcccCCCceeeecc
Confidence 4556777788888888888653 4555 5999999986 5677787 66677776322222344444433
No 85
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.62 E-value=44 Score=36.99 Aligned_cols=136 Identities=20% Similarity=0.277 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccccchHHHH----HHHHHHHHhccc---cCCceEEEeCCCCCCHHHHHHHHH--HHH
Q 009474 227 EAIEQIKRDGITKLVVLPLYPQFSISTSGSSL----RLLESIFREDEY---LVNMQHTVIPSWYQREGYITAMAN--LIE 297 (534)
Q Consensus 227 eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~----~~l~e~~~~~~~---~~~i~i~~I~~~~d~p~yI~Ala~--~I~ 297 (534)
+-+++|+++|+++|+++-.= .++.|.-. ..+.+.+++... ...+++..+.+..-.+.+|+++++ .|-
T Consensus 180 ~ev~~Lv~~G~kEI~L~gqd----v~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~ 255 (437)
T COG0621 180 KEVKRLVAQGVKEIVLTGQD----VNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVC 255 (437)
T ss_pred HHHHHHHHCCCeEEEEEEEe----hhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCccc
Confidence 34456788999999998761 11111111 113333332222 233566668888888999988884 222
Q ss_pred HHHHhCCCCCceEEEEeeCCcchhhhccCCC---------ch-HHHHHHHHHHHHHHhccccCCCCEEEEEecCcC-CCC
Q 009474 298 KELQNFDSPEQVMIFFSAHGVPLAYVEEAGD---------PY-KAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVE 366 (534)
Q Consensus 298 ~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GD---------pY-~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G-~~~ 366 (534)
.+| | +|+. .|| .| ..+..+.++.+.+... +. ....-| =+| |+|
T Consensus 256 ~~l---------------H-lPvQ----sGsd~ILk~M~R~yt~e~~~~~i~k~R~~~P--d~--~i~tDi--IVGFPgE 309 (437)
T COG0621 256 PHL---------------H-LPVQ----SGSDRILKRMKRGYTVEEYLEIIEKLRAARP--DI--AISTDI--IVGFPGE 309 (437)
T ss_pred ccc---------------c-Cccc----cCCHHHHHHhCCCcCHHHHHHHHHHHHHhCC--Cc--eEeccE--EEECCCC
Confidence 222 2 3432 233 25 3455555566665543 11 011111 124 555
Q ss_pred CCCCcHHHHHHHhhhcCCceEEEEccc
Q 009474 367 WLKPYTDETIIKLGQKGVKSLLAVPIS 393 (534)
Q Consensus 367 WL~P~t~d~L~~L~~~G~k~VvVvPig 393 (534)
.+-+.+++++-+.+-+..++-+++++
T Consensus 310 -TeedFe~tl~lv~e~~fd~~~~F~YS 335 (437)
T COG0621 310 -TEEDFEETLDLVEEVRFDRLHVFKYS 335 (437)
T ss_pred -CHHHHHHHHHHHHHhCCCEEeeeecC
Confidence 67899999999999999999999885
No 86
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=67.22 E-value=1.5e+02 Score=29.97 Aligned_cols=119 Identities=11% Similarity=0.187 Sum_probs=67.6
Q ss_pred HHHcCCCEEEEEecCCcccccchHH--HHHHHHHHHHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCce
Q 009474 232 IKRDGITKLVVLPLYPQFSISTSGS--SLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQV 309 (534)
Q Consensus 232 L~~~G~~rIvvlPLyPqyS~~TtGs--~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~ 309 (534)
+.++ .+=+.++.++|+...+...+ -.+.++...+.. ++++..++.-.....|.+.+.+.+++. +. +
T Consensus 20 a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~al----gipl~~~~~~~~~e~~~e~l~~~l~~~----gv-~-- 87 (223)
T TIGR00290 20 ALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESI----GIPLIKLYTEGTEEDEVEELKGILHTL----DV-E-- 87 (223)
T ss_pred HHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHc----CCCeEEeecCCCccHHHHHHHHHHHHc----CC-C--
Confidence 3344 66677778888743221111 122222222222 233444444555678888887666543 21 1
Q ss_pred EEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 310 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
+++| ||.+......=.+.+++++|+.. + -| =|-.+. ++.++++.+.|++.+++
T Consensus 88 ~vv~-------------GdI~s~~qr~~~e~v~~~lgl~~----~--------~P-LW~~~~-~~ll~e~i~~G~~aiIv 140 (223)
T TIGR00290 88 AVVF-------------GAIYSEYQKTRIERVCRELGLKS----F--------AP-LWHRDP-EKLMEEFVEEKFEARII 140 (223)
T ss_pred EEEE-------------CCcccHHHHHHHHHHHHhcCCEE----e--------cc-ccCCCH-HHHHHHHHHcCCeEEEE
Confidence 3544 67766666667788899987642 1 11 165554 56999999999988774
No 87
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=64.06 E-value=1.3e+02 Score=30.60 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. +.. .+.+++..-|.+++.+.-+.+.+.+.. ..+..-++|-
T Consensus 113 PH~Wldp~~~~~~a~~Ia~~L~~~dP-~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~~~~--~~~~~~v~~H 178 (282)
T cd01017 113 PHVWLSPVLAIQQVENIKDALIKLDP-DNK-----------EYYEKNAAAYAKKLEALDQEYRAKLAK--AKGKTFVTQH 178 (282)
T ss_pred CccccCHHHHHHHHHHHHHHHHHhCc-ccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCeEEEec
Confidence 56889999999999999999977542 210 111144466888888777777776642 1111222221
Q ss_pred cC-------cC--------CCCCCCCcHH---HHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SR-------VG--------PVEWLKPYTD---ETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr-------~G--------~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
.. +| ..+=.+|+.. +.++.+.+.|++ ++++-+.|-..-+|+ ++++.|.. .
T Consensus 179 ~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~if~e~~~~~~~~~~----------la~~~g~~-v 246 (282)
T cd01017 179 AAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVK-YIFFEENASSKIAET----------LAKETGAK-L 246 (282)
T ss_pred ccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCCChHHHHH----------HHHHcCCc-E
Confidence 11 11 1111245544 334455666765 555555665554443 56688876 4
Q ss_pred EEcCCCC
Q 009474 422 GRVPALG 428 (534)
Q Consensus 422 ~rvp~LN 428 (534)
..+..++
T Consensus 247 ~~ld~l~ 253 (282)
T cd01017 247 LVLNPLE 253 (282)
T ss_pred EEecccc
Confidence 4555554
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.74 E-value=73 Score=29.26 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=63.6
Q ss_pred EEEEEEccCCCCChhhHHHHHHhhc--CCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHHH
Q 009474 122 IGVLLLNLGGPETLEDVQPFLFNLF--ADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAE 199 (534)
Q Consensus 122 ~aVLLvnlGtP~s~~dV~~fL~~~l--~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~ 199 (534)
.-|+|.+.|+ +--+-=..|...|| .+-+|+++...- ....++...+ .+....| +-|-+..-+.....
T Consensus 3 ~~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~~-----s~e~~v~aa~----e~~adii-~iSsl~~~~~~~~~ 71 (132)
T TIGR00640 3 PRILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLFQ-----TPEEIARQAV----EADVHVV-GVSSLAGGHLTLVP 71 (132)
T ss_pred CEEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCCC-----CHHHHHHHHH----HcCCCEE-EEcCchhhhHHHHH
Confidence 3489999998 54444456777777 556777865311 1122222110 1122223 34777777778888
Q ss_pred HHHHHHhccCC-CceEEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 009474 200 ELRKSLWEKNL-PAKVYVGMRYWHPFTEEAIEQIKRDGITKLV 241 (534)
Q Consensus 200 ~L~~~L~~~g~-~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIv 241 (534)
.+.+.|++++. ++.|..|=.. | .+-.+++++.|+++++
T Consensus 72 ~~~~~L~~~g~~~i~vivGG~~--~--~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 72 ALRKELDKLGRPDILVVVGGVI--P--PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHhcCCCCCEEEEeCCC--C--hHhHHHHHHCCCCEEE
Confidence 88888988765 5667775222 2 3446678889999875
No 89
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=59.77 E-value=1.7e+02 Score=30.63 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=77.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. +.. .+.+++.+.|.+++++.-+.+.+.+.-. .....++|-
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~dP-~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~l~~~--~~~~~i~~H 210 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELMP-QSK-----------AKLDANLKDFEAQLAQTDKQIGNQLAPV--KGKGYFVFH 210 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCh-hhH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcEEEEC
Confidence 67899999999999999999977542 220 1112445678888888888887776421 111222222
Q ss_pred cCc---------------CCCCCCCCcHHH---HHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SRV---------------GPVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr~---------------G~~~WL~P~t~d---~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
..+ +..+=.+|+..+ +++.+++.|++ ++++-+.|-..-+ +.++++.|.+ .
T Consensus 211 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~If~e~~~~~~~~----------~~la~e~g~~-v 278 (311)
T PRK09545 211 DAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKAT-CVFAEPQFRPAVI----------ESVAKGTSVR-M 278 (311)
T ss_pred chHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCC-EEEecCCCChHHH----------HHHHHhcCCe-E
Confidence 111 111113566554 45555666764 4455556655444 4445588876 4
Q ss_pred EEcCCCCCC-----HHHHHHHHHHH
Q 009474 422 GRVPALGCE-----ATFISDLADAV 441 (534)
Q Consensus 422 ~rvp~LNds-----p~fI~~Lad~V 441 (534)
..+..++.. ..+.+.+...+
T Consensus 279 ~~ldpl~~~~~~~~~~Y~~~m~~n~ 303 (311)
T PRK09545 279 GTLDPLGTNIKLGKDSYSEFLSQLA 303 (311)
T ss_pred EEeccccccccCCHhHHHHHHHHHH
Confidence 556555532 45666554443
No 90
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=58.16 E-value=1.4e+02 Score=29.80 Aligned_cols=195 Identities=22% Similarity=0.301 Sum_probs=98.0
Q ss_pred CCCch-HHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH
Q 009474 186 GGSPL-RRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 264 (534)
Q Consensus 186 ggSPL-~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~ 264 (534)
|.+|. .+.|-++.++|++ .++-|+.|+.|- +++.+.++ +..-.++.++++......
T Consensus 29 ~~dpH~~~~~p~d~~~l~~------Adlvv~~G~~~e-~~l~~~~~---~~~~~~~~~i~~~~~~~~------------- 85 (256)
T PF01297_consen 29 GADPHDYEPTPSDIKKLQK------ADLVVYNGLGLE-PWLEKLLE---SSQNPKVKVIDLSEGIDL------------- 85 (256)
T ss_dssp TSCTTT----HHHHHHHHH------SSEEEES-TTTS-CCHHHHHH---TTTTTTTEEEETTTTS-G-------------
T ss_pred CCccccccCChHHHHHHHh------CCEEEEeCCccc-hhhhhhhh---cccccccceEEeeccccc-------------
Confidence 34443 3446666666644 267777776665 88888872 334455667777543210
Q ss_pred HHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHH
Q 009474 265 FREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEE 344 (534)
Q Consensus 265 ~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~ 344 (534)
.... . =+++|-+|.....+++.|.+.|.+.+ |+.. ...+++...|..++.+..+.+.+.
T Consensus 86 -~~~~--~------npH~Wldp~~~~~~~~~Ia~~L~~~~-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~ 144 (256)
T PF01297_consen 86 -DHHG--H------NPHVWLDPENAKKMAEAIADALSELD-PANK-----------DYYEKNAEKYLKELDELDAEIKEK 144 (256)
T ss_dssp -STTC--B------ESTGGGSHHHHHHHHHHHHHHHHHHT-GGGH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCC--C------CCchHHHHHHHHHHHHHHHHHHHHhC-ccch-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 34577788888888888888876643 1110 011123345666666666666555
Q ss_pred hccccCCCCEE------------------EEEecCcCCCCCCCCcHHH---HHHHhhhcCCceEEEEccccchhhhhhhH
Q 009474 345 LEKRKITNAYT------------------LAYQSRVGPVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLE 403 (534)
Q Consensus 345 Lg~~~~~~~~~------------------lafQSr~G~~~WL~P~t~d---~L~~L~~~G~k~VvVvPigFvsDhlETL~ 403 (534)
+..- .+..- ++.+ ..+++ .+|+..+ .++.+.+.|++ +++....+-...+++
T Consensus 145 ~~~~--~~~~~v~~h~~~~Y~~~~~gl~~~~~~-~~~~~--~~ps~~~l~~l~~~ik~~~v~-~i~~e~~~~~~~~~~-- 216 (256)
T PF01297_consen 145 LAKL--PGRPVVVYHDAFQYFAKRYGLKVIGVI-EISPG--EEPSPKDLAELIKLIKENKVK-CIFTEPQFSSKLAEA-- 216 (256)
T ss_dssp HTTS--SGGEEEEEESTTHHHHHHTT-EEEEEE-SSSSS--SSS-HHHHHHHHHHHHHTT-S-EEEEETTS-THHHHH--
T ss_pred hhcc--cCCeEEEEChHHHHHHHhcCCceeeee-ccccc--cCCCHHHHHHHHHHhhhcCCc-EEEecCCCChHHHHH--
Confidence 4311 00111 2222 11222 2344443 33444555654 455555666555543
Q ss_pred hHHHHHHHHHHHcCCeeEEEcCCC----CCCHHHHHHHHHHH
Q 009474 404 EIDVEYKELALKSGIEKWGRVPAL----GCEATFISDLADAV 441 (534)
Q Consensus 404 EIdiE~rela~e~G~~~~~rvp~L----Ndsp~fI~~Lad~V 441 (534)
++++.|+. ...+..+ .+...+++.|.+.+
T Consensus 217 --------la~~~g~~-vv~ld~l~~~~~~~~~y~~~~~~n~ 249 (256)
T PF01297_consen 217 --------LAKETGVK-VVYLDPLGGGIPDGDSYLDMMEQNL 249 (256)
T ss_dssp --------HHHCCT-E-EEESSTTCSTTSSTTSHHHHHHHHH
T ss_pred --------HHHHcCCc-EEEeCCCcCCCCCcCCHHHHHHHHH
Confidence 46788986 5677777 55557777766544
No 91
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.85 E-value=2.2e+02 Score=28.99 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=73.4
Q ss_pred CCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCCCCCC
Q 009474 210 LPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQR 285 (534)
Q Consensus 210 ~~v~V~~AMRY~~P----~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~ 285 (534)
.++++. .|-|.+| .+++-++++++.|++.+++--+ |. .....+.+.+++.. +....+-.-...
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~-------ee~~~~~~~~~~~g----l~~i~lv~P~T~ 152 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PL-------EESGDLVEAAKKHG----VKPIFLVAPNAD 152 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-Ch-------HHHHHHHHHHHHCC----CcEEEEECCCCC
Confidence 355655 9999999 5667788999999998888776 21 12223333333322 222222223333
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 009474 286 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 365 (534)
Q Consensus 286 p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~ 365 (534)
+.-++.+++. . +...++.|-.|.- .....+..++.+..+.+.+..+. ++.+. +|
T Consensus 153 ~eri~~i~~~-------~---~gfiy~vs~~G~T-----G~~~~~~~~~~~~i~~lr~~~~~-----pi~vg----fG-- 206 (256)
T TIGR00262 153 DERLKQIAEK-------S---QGFVYLVSRAGVT-----GARNRAASALNELVKRLKAYSAK-----PVLVG----FG-- 206 (256)
T ss_pred HHHHHHHHHh-------C---CCCEEEEECCCCC-----CCcccCChhHHHHHHHHHhhcCC-----CEEEe----CC--
Confidence 3344333321 1 2233555655542 11123566677777777775431 23332 23
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEE
Q 009474 366 EWLKPYTDETIIKLGQKGVKSLLAV 390 (534)
Q Consensus 366 ~WL~P~t~d~L~~L~~~G~k~VvVv 390 (534)
=++.+.++++.+.|+.-|+|=
T Consensus 207 ----I~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 207 ----ISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEC
Confidence 234456777777777655443
No 92
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=56.87 E-value=47 Score=29.70 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCceEEEEc-cccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCC--HHHHHHHHHHHHH
Q 009474 372 TDETIIKLGQKGVKSLLAVP-ISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCE--ATFISDLADAVIE 443 (534)
Q Consensus 372 t~d~L~~L~~~G~k~VvVvP-igFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNds--p~fI~~Lad~V~e 443 (534)
+.+-+++|+++|+|.|+=.- -+=-.+.- ... +.++.++++|+. |.++|.-... ++-++.+++.+.+
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp-~~~----~~~~~a~~~Gl~-y~~iPv~~~~~~~~~v~~f~~~l~~ 84 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQP-SSA----EEAAAAEALGLQ-YVHIPVDGGAITEEDVEAFADALES 84 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T--HH----CHHHHHHHCT-E-EEE----TTT--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCC-CHH----HHHHHHHHcCCe-EEEeecCCCCCCHHHHHHHHHHHHh
Confidence 34578899999999987553 21111111 112 257788999996 8899977654 4555666666654
No 93
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=53.78 E-value=28 Score=37.58 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=38.1
Q ss_pred CcHHHHHHHhhhcCCceEEEEc-cccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 370 PYTDETIIKLGQKGVKSLLAVP-ISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 370 P~t~d~L~~L~~~G~k~VvVvP-igFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
|.|.+.|--..+-|+++++|+= =.=..|.-|+|+-.++|.||+..+.|+.
T Consensus 156 PQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 156 PQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred cchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 7777777665566888877642 2344567799999999999999999975
No 94
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=53.52 E-value=2.5e+02 Score=28.34 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=76.1
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEE
Q 009474 279 IPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAY 358 (534)
Q Consensus 279 I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~laf 358 (534)
=+++|-+|.....+++.|.+.|.+.+. +.. .+.+++...|.+++.+.-+.+.+.+.. ..+..-++|
T Consensus 111 dPH~Wldp~~~~~~a~~I~~~L~~~dP-~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~~~~--~~~~~~v~~ 176 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYEALAELDP-QNA-----------TYYQANLDALLAELDALDSEIRTILSK--LKQRAFMVY 176 (266)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHHhCc-ccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEE
Confidence 367889999999999999999977542 210 111134456888888777777776532 111112222
Q ss_pred ecCc-------C-----C-CCCCCC---cHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEE
Q 009474 359 QSRV-------G-----P-VEWLKP---YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 422 (534)
Q Consensus 359 QSr~-------G-----~-~~WL~P---~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~ 422 (534)
-..+ | . .+=.+| .+.+.++.+++.|++ ++++-..|-..-+| .++++.|.. ..
T Consensus 177 H~af~Y~~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~if~e~~~~~~~~~----------~la~~~g~~-v~ 244 (266)
T cd01018 177 HPAWGYFARDYGLTQIPIEEEGKEPSPADLKRLIDLAKEKGVR-VVFVQPQFSTKSAE----------AIAREIGAK-VV 244 (266)
T ss_pred CchhHHHHHHcCCEEEecCCCCCCCCHHHHHHHHHHHHHcCCC-EEEEcCCCCcHHHH----------HHHHHcCCe-EE
Confidence 1111 1 0 011246 445556666777876 44444455444443 556688886 45
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q 009474 423 RVPALGCEATFISDLADAVI 442 (534)
Q Consensus 423 rvp~LNdsp~fI~~Lad~V~ 442 (534)
.+..++ ..+++.+...+.
T Consensus 245 ~ld~~~--~~y~~~m~~n~~ 262 (266)
T cd01018 245 TIDPLA--ADWEENLLKVAD 262 (266)
T ss_pred EeCCcH--HHHHHHHHHHHH
Confidence 555555 356666655543
No 95
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=52.42 E-value=2e+02 Score=27.41 Aligned_cols=53 Identities=28% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH--HHHHHHH-HcCCCEEEEEe
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIK-RDGITKLVVLP 244 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~--eaL~~L~-~~G~~rIvvlP 244 (534)
.+||...-++||+++.+.|...++++... |+.|... ++.+.+. ..|.. +.+.+
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i----~sS~l~Ra~~TA~~~a~~~~~~-~~~~~ 81 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAI----YSSPLKRAQQTAEPLAEELGLP-LEVDD 81 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEE----EECchHHHHHHHHHHHHhcCCC-ceecC
Confidence 46999999999999999998543333222 6666654 4444443 34554 44444
No 96
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.12 E-value=1.6e+02 Score=29.80 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=72.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+...+ ..|- ++.+-|.+++.+.-+.+.+.+.. ..+.--++|-
T Consensus 95 PH~Wldp~n~~~~a~~I~~~L~~~dP~~~-----------~~y~-~N~~~~~~~l~~l~~~~~~~~~~--~~~~~~v~~H 160 (264)
T cd01020 95 PHLWYDPETMSKVANALADALVKADPDNK-----------KYYQ-ANAKKFVASLKPLAAKIAELSAK--YKGAPVAATE 160 (264)
T ss_pred CceecCHhHHHHHHHHHHHHHHHhCcccH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHhh--CCCCeEEEeC
Confidence 56899999999999999999987642111 0111 34456777777776666665531 1111122221
Q ss_pred -------cCcCCCC------------CCCCcH---HHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcC
Q 009474 360 -------SRVGPVE------------WLKPYT---DETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSG 417 (534)
Q Consensus 360 -------Sr~G~~~------------WL~P~t---~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G 417 (534)
.++|-.. =.+|+. .+.++.+.+.++ +++++-+.|-+.-.|++.+ ++++.|
T Consensus 161 ~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v-~~if~e~~~~~k~~~~l~~-------la~~~~ 232 (264)
T cd01020 161 PVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQI-DALIVNPQQASSATTNITG-------LAKRSG 232 (264)
T ss_pred chHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCC-CEEEeCCCCCcHHHHHHHH-------HHHHcC
Confidence 1123110 123444 444455555565 4566666776655555443 466778
Q ss_pred CeeEEEcCCCCCCHHHHHHHHHH
Q 009474 418 IEKWGRVPALGCEATFISDLADA 440 (534)
Q Consensus 418 ~~~~~rvp~LNdsp~fI~~Lad~ 440 (534)
+........+.....+++.+.+.
T Consensus 233 ~~v~~l~~~~~~~~~y~~~m~~n 255 (264)
T cd01020 233 VPVVEVTETMPNGTTYLTWMLKQ 255 (264)
T ss_pred CCEEeecCCCCCCCCHHHHHHHH
Confidence 76433222222223455555443
No 97
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=46.42 E-value=1.7e+02 Score=29.31 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEE
Q 009474 326 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 389 (534)
Q Consensus 326 ~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 389 (534)
-||.+......=.+.+++++|+.. . -| =|-. +.++.++++.+.|++.+++
T Consensus 91 ~GdI~~~~~r~~~e~vc~~lGl~~-------~-----~P-LW~~-d~~~ll~e~i~~Gf~aiIv 140 (218)
T PF01902_consen 91 FGDIDSEYQRNWVERVCERLGLEA-------V-----FP-LWGR-DREELLREFIESGFEAIIV 140 (218)
T ss_dssp --TTS-HHHHHHHHHHHHHCT-EE-------E------T-TTT---HHHHHHHHHHTT-EEEEE
T ss_pred ECcCCcHHHHHHHHHHHHHcCCEE-------E-----ec-ccCC-CHHHHHHHHHHCCCeEEEE
Confidence 378777777777888999998542 1 11 1655 4557999999999988876
No 98
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=46.33 E-value=3.9e+02 Score=28.42 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHHHHhCC-CCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcC
Q 009474 285 REGYITAMANLIEKELQNFD-SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG 363 (534)
Q Consensus 285 ~p~yI~Ala~~I~~~l~~~~-~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G 363 (534)
.+.|++++.+-|+...+.++ ....+.-||-.-|+|.-.- ..++.+..+.+.+..+... .++++.-++-+
T Consensus 35 ~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~-------~~~l~~ll~~i~~~~~~~~---~~e~t~e~~p~ 104 (375)
T PRK05628 35 PDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG-------AEGLARVLDAVRDTFGLAP---GAEVTTEANPE 104 (375)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC-------HHHHHHHHHHHHHhCCCCC---CCEEEEEeCCC
Confidence 46688888887765544432 1122345665566664321 3566667777776655431 24455444221
Q ss_pred CCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhH-----hHHHHHHHHHHHcCCeeE--E-EcCCCCCCHHHHH
Q 009474 364 PVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLE-----EIDVEYKELALKSGIEKW--G-RVPALGCEATFIS 435 (534)
Q Consensus 364 ~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EIdiE~rela~e~G~~~~--~-rvp~LNdsp~fI~ 435 (534)
--+++.|+.|++.|+++|-+=.=+|-.+.++.+. +-..+.-+.+++.|+.++ . .+..++.+.+=+.
T Consensus 105 ------~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~ 178 (375)
T PRK05628 105 ------STSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWR 178 (375)
T ss_pred ------CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHH
Confidence 1256788888888988777655567666666552 223344566778887622 2 2334566654433
Q ss_pred HHHHHH
Q 009474 436 DLADAV 441 (534)
Q Consensus 436 ~Lad~V 441 (534)
.-.+.+
T Consensus 179 ~tl~~~ 184 (375)
T PRK05628 179 ASLDAA 184 (375)
T ss_pred HHHHHH
Confidence 333333
No 99
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.06 E-value=3.2e+02 Score=27.25 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=75.0
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEecCCc-ccccchHHHHHHHHHHHHhccccCCceEEEeCC---------CCCCHHH
Q 009474 219 RYWHPFTEEAIEQIKRDGITKLVVLPLYPQ-FSISTSGSSLRLLESIFREDEYLVNMQHTVIPS---------WYQREGY 288 (534)
Q Consensus 219 RY~~P~I~eaL~~L~~~G~~rIvvlPLyPq-yS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~---------~~d~p~y 288 (534)
-|+.-.+++.++.+++.|++.|=+..-+|+ |....+....+++.+.+++. ++++.-+.. ...++..
T Consensus 9 ~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~----gl~v~s~~~~~~~~~~~~~~~~~~~ 84 (275)
T PRK09856 9 GHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTY----QMPIIGYTPETNGYPYNMMLGDEHM 84 (275)
T ss_pred hheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHc----CCeEEEecCcccCcCccccCCCHHH
Confidence 344557999999999999998777544443 11111222344555555443 233433321 1234555
Q ss_pred HHHHHHHHHHHHH---hCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 009474 289 ITAMANLIEKELQ---NFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 365 (534)
Q Consensus 289 I~Ala~~I~~~l~---~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~ 365 (534)
.++..+.+++.++ .++. +..++...|. ... ...+...+...+..+.+++.+.. ..+++++-......
T Consensus 85 r~~~~~~~~~~i~~a~~lGa--~~i~~~~~~~---~~~-~~~~~~~~~~~~~l~~l~~~a~~----~gv~l~iE~~~~~~ 154 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNA--GYTLISAAHA---GYL-TPPNVIWGRLAENLSELCEYAEN----IGMDLILEPLTPYE 154 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CEEEEcCCCC---CCC-CCHHHHHHHHHHHHHHHHHHHHH----cCCEEEEecCCCCc
Confidence 5555555554443 2332 3223322221 111 11122334444555555555432 24788887642223
Q ss_pred CCCCCcHHHHHHHhhhcCCceE
Q 009474 366 EWLKPYTDETIIKLGQKGVKSL 387 (534)
Q Consensus 366 ~WL~P~t~d~L~~L~~~G~k~V 387 (534)
.|.-++.++.++-+..-+..+|
T Consensus 155 ~~~~~t~~~~~~l~~~~~~~~v 176 (275)
T PRK09856 155 SNVVCNANDVLHALALVPSPRL 176 (275)
T ss_pred ccccCCHHHHHHHHHHcCCCcc
Confidence 3455666666665555454444
No 100
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.05 E-value=3.6e+02 Score=28.99 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=35.3
Q ss_pred eEEEEccc--cchhhhhhhHhHHHHHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 386 SLLAVPIS--FVSEHIETLEEIDVEYKELALKSGIE---KWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 386 ~VvVvPig--FvsDhlETL~EIdiE~rela~e~G~~---~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
+--++|+. | ++|.|.+ ..++..++.|.. .|..+..+||+++-++.|++.+..
T Consensus 213 R~~imP~~~~~---~l~el~~---a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~ 269 (344)
T PRK14464 213 RARLLPRAPRI---APEELVE---LGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKG 269 (344)
T ss_pred hheeCCccCCC---CHHHHHH---HHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 34567764 3 2433333 345555566631 589999999999999999999873
No 101
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=44.92 E-value=4.1e+02 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccCCCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEE
Q 009474 197 QAEELRKSLWEKNLPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVL 243 (534)
Q Consensus 197 qa~~L~~~L~~~g~~v~V~~AMRY~~P----~I~eaL~~L~~~G~~rIvvl 243 (534)
|++.+.+.|.+.|.++.+...++.-++ .+.++++++....++-||+.
T Consensus 21 ~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfT 71 (381)
T PRK07239 21 RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVAT 71 (381)
T ss_pred CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEe
Confidence 667788888888877666555554433 45566777765667866643
No 102
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=40.29 E-value=1.5e+02 Score=29.49 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 409 YKELALKSGIE---KWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 409 ~rela~e~G~~---~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
.-+.+.+.|.. +...+|.+||+++-++.+++.+.+
T Consensus 119 nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 119 NLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33445677765 345589999999999999999875
No 103
>PRK03906 mannonate dehydratase; Provisional
Probab=37.62 E-value=48 Score=36.06 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 009474 365 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 433 (534)
Q Consensus 365 ~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~f 433 (534)
-.|.+|.-...|+.+++.|++.||..-...-..-+=|+++| .+.|+..+++|.+ +..|+.++-++.+
T Consensus 5 ~rw~g~~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i-~~~~~~ie~~Gl~-~~vvEs~pv~~~I 71 (385)
T PRK03906 5 WRWFGPNDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEI-LARKAEIEAAGLE-WSVVESVPVHEDI 71 (385)
T ss_pred EEEeCCCCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCCe-EEEEeCCCccHHH
Confidence 35889988888999999999999954322212222233333 2357788899986 8889998888755
No 104
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=37.49 E-value=80 Score=29.75 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=43.8
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEccccchh--hhhhhHhHHHHHHHHHHHcCCeeEEEcCCCC
Q 009474 366 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSE--HIETLEEIDVEYKELALKSGIEKWGRVPALG 428 (534)
Q Consensus 366 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsD--hlETL~EIdiE~rela~e~G~~~~~rvp~LN 428 (534)
+|+.|.+.++|++|.+.|++=|+|--=+=++- ...++.++......++++.|+....++.+-.
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~ 92 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHK 92 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCS
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 35778999999999999965554444444444 3456777777778899999998766666555
No 105
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.90 E-value=4.2e+02 Score=26.10 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCEEEEEecC-Ccccc----cchHHHHHHHHHHHHhcccc-CCceEEEeCCCC--CCHHHHHHHHHHHH
Q 009474 226 EEAIEQIKRDGITKLVVLPLY-PQFSI----STSGSSLRLLESIFREDEYL-VNMQHTVIPSWY--QREGYITAMANLIE 297 (534)
Q Consensus 226 ~eaL~~L~~~G~~rIvvlPLy-PqyS~----~TtGs~~~~l~e~~~~~~~~-~~i~i~~I~~~~--d~p~yI~Ala~~I~ 297 (534)
.+.++.+.+.|++.|.+.--- +.+.. .+....++.+.+..+..+.. -.+.+.+..-+. .++.++..+++.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE 156 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 778888888898765544321 00000 11111333333333222211 123333445566 88888888886665
Q ss_pred HHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe--cCcCCCCCCCCcHHHH
Q 009474 298 KELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ--SRVGPVEWLKPYTDET 375 (534)
Q Consensus 298 ~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ--Sr~G~~~WL~P~t~d~ 375 (534)
+. + .+. +-+ ....|-.++.++.+..+.+.+..+. ..+.|- ...| =.+..+
T Consensus 157 ~~----g-~~~--i~l---------~Dt~G~~~P~~v~~li~~l~~~~~~------~~~~~H~Hn~~g------la~an~ 208 (265)
T cd03174 157 EA----G-ADE--ISL---------KDTVGLATPEEVAELVKALREALPD------VPLGLHTHNTLG------LAVANS 208 (265)
T ss_pred Hc----C-CCE--EEe---------chhcCCcCHHHHHHHHHHHHHhCCC------CeEEEEeCCCCC------hHHHHH
Confidence 43 2 122 222 1134667888888898888887641 334443 3333 235556
Q ss_pred HHHhhhcCCceEEEE--ccccchhhh
Q 009474 376 IIKLGQKGVKSLLAV--PISFVSEHI 399 (534)
Q Consensus 376 L~~L~~~G~k~VvVv--PigFvsDhl 399 (534)
+..+ +.|++.|-.- ++|=-+.+.
T Consensus 209 laA~-~aG~~~id~s~~G~G~~~Gn~ 233 (265)
T cd03174 209 LAAL-EAGADRVDGSVNGLGERAGNA 233 (265)
T ss_pred HHHH-HcCCCEEEeccccccccccCc
Confidence 6665 4587776644 444334443
No 106
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=36.71 E-value=39 Score=33.76 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=34.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLY 246 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLy 246 (534)
|=||-++.+|++--..| |+ + ++.|.|+..+++|++.|++.|+++.=|
T Consensus 9 G~gsR~~plT~~tpK~L---lk-----V-------~g~plIErqI~~L~e~gI~dI~IVvGY 55 (231)
T COG4750 9 GLGSRFVPLTQSTPKSL---LK-----V-------NGEPLIERQIEQLREAGIDDITIVVGY 55 (231)
T ss_pred ccccccccccccCChHH---HH-----h-------cCcccHHHHHHHHHHCCCceEEEEeee
Confidence 45666666665533333 21 1 477999999999999999999999876
No 107
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=36.10 E-value=92 Score=32.75 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=26.1
Q ss_pred CceEEEEeeCCcchhhhc---cCC-------CchHHHHHHHHHHHHH
Q 009474 307 EQVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDLIME 343 (534)
Q Consensus 307 ~~~~LLFSaHGlP~~~ie---~~G-------DpY~~q~~eTa~~v~e 343 (534)
+...+||||||+|...-+ ++| .|+...++..++...+
T Consensus 66 ~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~ 112 (294)
T COG0761 66 DGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAR 112 (294)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHh
Confidence 444799999999987642 223 3788888887766655
No 108
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=35.94 E-value=5.5e+02 Score=27.15 Aligned_cols=137 Identities=20% Similarity=0.186 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCC
Q 009474 285 REGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP 364 (534)
Q Consensus 285 ~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~ 364 (534)
...|++++...|...++.++. ..+.-|+-.-|+|.-. -..++++..+.|.+.++.. ...+++.-+.-+.
T Consensus 29 ~~~y~~~l~~Ei~~~~~~~~~-~~v~~i~~GGGtPs~l-------~~~~l~~ll~~i~~~~~~~---~~~eitie~np~~ 97 (360)
T TIGR00539 29 KEEYTQALCQDLKHALSQTDQ-EPLESIFIGGGTPNTL-------SVEAFERLFESIYQHASLS---DDCEITTEANPEL 97 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CcccEEEeCCCchhcC-------CHHHHHHHHHHHHHhCCCC---CCCEEEEEeCCCC
Confidence 345888888888766554431 1233455445555321 1466777777776665432 1245555443221
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhH-----hHHHHHHHHHHHcCCeeE--EEc-CCCCCCHH-HHH
Q 009474 365 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLE-----EIDVEYKELALKSGIEKW--GRV-PALGCEAT-FIS 435 (534)
Q Consensus 365 ~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EIdiE~rela~e~G~~~~--~rv-p~LNdsp~-fI~ 435 (534)
-+++.++.|++.|+.+|-+=-=+|-.+.+..+. +--.+.-+.+++.|+..+ ..+ -.++.+.+ |.+
T Consensus 98 ------lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~ 171 (360)
T TIGR00539 98 ------ITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKE 171 (360)
T ss_pred ------CCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHH
Confidence 256788888888887776655556555554442 223344567778888533 223 33466654 444
Q ss_pred HHH
Q 009474 436 DLA 438 (534)
Q Consensus 436 ~La 438 (534)
.+.
T Consensus 172 ~l~ 174 (360)
T TIGR00539 172 ELK 174 (360)
T ss_pred HHH
Confidence 333
No 109
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.49 E-value=54 Score=29.24 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=27.4
Q ss_pred CcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 370 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 370 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
..+.+.++++.+.|++.|++.|= +.+.+..+.++++|+.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g-----------~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG-----------AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT-----------S--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc-----------hHHHHHHHHHHHcCCE
Confidence 36788999999999999988885 4445577888889975
No 110
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=34.03 E-value=4e+02 Score=25.01 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCEEEEEecCCccc-----ccchHHHHHHHHHHHHhccccCCceEEE--eCCCCCCHHHHHHHHHHHHHH
Q 009474 227 EAIEQIKRDGITKLVVLPLYPQFS-----ISTSGSSLRLLESIFREDEYLVNMQHTV--IPSWYQREGYITAMANLIEKE 299 (534)
Q Consensus 227 eaL~~L~~~G~~rIvvlPLyPqyS-----~~TtGs~~~~l~e~~~~~~~~~~i~i~~--I~~~~d~p~yI~Ala~~I~~~ 299 (534)
..+++..+. +++++++|-.-+.. .++.+.=++.+.+++... +.+.+.. ++....+|..-+.|++.|+..
T Consensus 17 ~li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~---~~~~v~~~~~~d~~~~~~~w~~w~~~v~~~ 92 (158)
T cd02167 17 YLIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPDQ---ENIVVHTLNEPDIPEYPNGWDIWSNRVKTL 92 (158)
T ss_pred HHHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCCCchhHHHHHHHHHHH
Confidence 445555444 69999999754433 345555555666666432 3334443 334545666677788888888
Q ss_pred HHhCCCCCceEEEEeeCC
Q 009474 300 LQNFDSPEQVMIFFSAHG 317 (534)
Q Consensus 300 l~~~~~~~~~~LLFSaHG 317 (534)
+..... .+..++|+.|-
T Consensus 93 v~~~~~-~~~~~vf~~~~ 109 (158)
T cd02167 93 IAENTR-CRPDIVFTAEE 109 (158)
T ss_pred HhhhcC-CCCCEEEEccC
Confidence 864210 12236887764
No 111
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=33.37 E-value=5.9e+02 Score=26.72 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=61.7
Q ss_pred cCCCchH---HHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhh
Q 009474 325 EAGDPYK---AEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIET 401 (534)
Q Consensus 325 ~~GDpY~---~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlET 401 (534)
..|||.. ..+.+.++.+.+ ++. --.+.+-|+.- +-|-.=-+++.++.|++.| +.+. +-+-+ .|.+-
T Consensus 143 SGGDPl~~~~~~L~~ll~~l~~-i~~-----v~~iri~Tr~~-v~~p~rit~ell~~L~~~g-~~v~-i~l~~--~h~~e 211 (321)
T TIGR03822 143 TGGDPLVLSPRRLGDIMARLAA-IDH-----VKIVRFHTRVP-VADPARVTPALIAALKTSG-KTVY-VALHA--NHARE 211 (321)
T ss_pred eCCCcccCCHHHHHHHHHHHHh-CCC-----ccEEEEeCCCc-ccChhhcCHHHHHHHHHcC-CcEE-EEecC--CChhh
Confidence 3477753 456666655554 221 11344445532 2121113578888888888 3443 22222 34443
Q ss_pred hHhHHHHHHHHHHHcCCee---EEEcCCCCCCHHHHHHHHHHHHH
Q 009474 402 LEEIDVEYKELALKSGIEK---WGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 402 L~EIdiE~rela~e~G~~~---~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
+.+-..++-+.+.++|+.. ++.+...|++.+-++.|.+.+.+
T Consensus 212 l~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 212 LTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVE 256 (321)
T ss_pred cCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHh
Confidence 4455555667778999864 56777889998877777776654
No 112
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=33.11 E-value=6.9e+02 Score=27.42 Aligned_cols=140 Identities=20% Similarity=0.224 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhc-cccCCCCEEEEEecCcC
Q 009474 285 REGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE-KRKITNAYTLAYQSRVG 363 (534)
Q Consensus 285 ~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg-~~~~~~~~~lafQSr~G 363 (534)
...|++++.+-|+......+....+.-||-.+|+|.-. =..+++.....|.+.++ .. +..+++.=.
T Consensus 64 ~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL-------~~~~l~~ll~~l~~~~~~~~---~~~EitiE~--- 130 (416)
T COG0635 64 VDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLL-------SPEQLERLLKALRELFNDLD---PDAEITIEA--- 130 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccC-------CHHHHHHHHHHHHHhcccCC---CCceEEEEe---
Confidence 34588888877776665544323577799999999654 24677777888888774 22 224555422
Q ss_pred CCCCCCCc--HHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHH-----HHHHHHHHcCCeeE--EEcCC--CCCCHH
Q 009474 364 PVEWLKPY--TDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDV-----EYKELALKSGIEKW--GRVPA--LGCEAT 432 (534)
Q Consensus 364 ~~~WL~P~--t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdi-----E~rela~e~G~~~~--~rvp~--LNdsp~ 432 (534)
-|. ..+.++.+++.|+.+|=+=-=+|=.+-+.++..+.. +.-+.+.+.|+.++ ..+=. --+.+.
T Consensus 131 -----nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~ 205 (416)
T COG0635 131 -----NPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLES 205 (416)
T ss_pred -----CCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHH
Confidence 244 677889999999999887776777777766654433 33566677777632 22221 223345
Q ss_pred HHHHHHHHHH
Q 009474 433 FISDLADAVI 442 (534)
Q Consensus 433 fI~~Lad~V~ 442 (534)
|.+.|...+.
T Consensus 206 ~~~~l~~a~~ 215 (416)
T COG0635 206 LKEDLEQALE 215 (416)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 113
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=32.77 E-value=2e+02 Score=33.88 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=62.3
Q ss_pred CcEEEEEEccCCCCChhhHHHHHHhhcCCCCcc-cCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHH
Q 009474 120 EKIGVLLLNLGGPETLEDVQPFLFNLFADPDII-RLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQA 198 (534)
Q Consensus 120 ~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI-~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa 198 (534)
++.-|+|.++|++ .-+.=..|..+||.+-.+- ..+..+. ....++.-.+ .+....+ +-|-+...+..++
T Consensus 581 ~rpkV~LatlG~d-~H~~ra~fv~~~l~~~GfeV~~~~~~~----s~e~~v~aa~----~~~a~iv-vlcs~d~~~~e~~ 650 (714)
T PRK09426 581 RRPRILVAKMGQD-GHDRGAKVIATAFADLGFDVDIGPLFQ----TPEEAARQAV----ENDVHVV-GVSSLAAGHKTLV 650 (714)
T ss_pred CCceEEEEecCCc-chhHhHHHHHHHHHhCCeeEecCCCCC----CHHHHHHHHH----HcCCCEE-EEeccchhhHHHH
Confidence 3456999999997 4555567899999654331 1221110 1122211110 0111111 2256666666778
Q ss_pred HHHHHHHhccCC-CceEEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 009474 199 EELRKSLWEKNL-PAKVYVGMRYWHPFTEEAIEQIKRDGITKLV 241 (534)
Q Consensus 199 ~~L~~~L~~~g~-~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIv 241 (534)
..+.+.|++.|. ++.|+.| |.|.-++ .+.+++.|++.++
T Consensus 651 ~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i 690 (714)
T PRK09426 651 PALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIF 690 (714)
T ss_pred HHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEE
Confidence 888888888765 3777887 6644333 3778888988765
No 114
>PLN02591 tryptophan synthase
Probab=32.74 E-value=2.2e+02 Score=29.09 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 009474 368 LKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 441 (534)
Q Consensus 368 L~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V 441 (534)
...-.++-++++++.|+..|++...-+ |=..++++.++++|+... .+=.++.+++-++.+++.-
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~---------ee~~~~~~~~~~~gl~~I-~lv~Ptt~~~ri~~ia~~~ 154 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPL---------EETEALRAEAAKNGIELV-LLTTPTTPTERMKAIAEAS 154 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHHcCCeEE-EEeCCCCCHHHHHHHHHhC
Confidence 456788999999999999998885543 223357889999999744 4445778887788877764
No 115
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.71 E-value=4.1e+02 Score=27.10 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=41.1
Q ss_pred cHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 009474 371 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 441 (534)
Q Consensus 371 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V 441 (534)
-+++-++++++.|+..|++....+ +|. .+..+.++++|+. ...+=.++++++-++.+++..
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~--------ee~-~~~~~~~~~~gl~-~i~lv~P~T~~eri~~i~~~~ 163 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPL--------EES-GDLVEAAKKHGVK-PIFLVAPNADDERLKQIAEKS 163 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCh--------HHH-HHHHHHHHHCCCc-EEEEECCCCCHHHHHHHHHhC
Confidence 567889999999998877764432 222 3477788899986 334445666766666666654
No 116
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.52 E-value=2.3e+02 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=35.6
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
+++|..+- +..+++++++.. ++.|++-++++| |.|...+-...++.+.++.+.
T Consensus 73 ~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 73 KVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIIDS 128 (293)
T ss_pred CCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHHh
Confidence 45566655 567889888754 457999999998 556665555555555565543
No 117
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.24 E-value=4.9e+02 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=27.9
Q ss_pred CCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEEec
Q 009474 210 LPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVLPL 245 (534)
Q Consensus 210 ~~v~V~~AMRY~~P----~I~eaL~~L~~~G~~rIvvlPL 245 (534)
.++++ +.|.|++| .+++-++++++.|++-+++--|
T Consensus 88 ~~~p~-vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL 126 (258)
T PRK13111 88 PTIPI-VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL 126 (258)
T ss_pred CCCCE-EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCC
Confidence 44555 48999999 6668889999999999998545
No 118
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=31.93 E-value=1e+02 Score=37.67 Aligned_cols=80 Identities=11% Similarity=-0.051 Sum_probs=43.1
Q ss_pred CCEEEEEecCcCCCCCCCCc-HHHHHHHhhhcCCceEEEEccc-cchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCC
Q 009474 352 NAYTLAYQSRVGPVEWLKPY-TDETIIKLGQKGVKSLLAVPIS-FVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGC 429 (534)
Q Consensus 352 ~~~~lafQSr~G~~~WL~P~-t~d~L~~L~~~G~k~VvVvPig-FvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNd 429 (534)
..++++.|+-+...+...|. ....|+.+.....++-+.-+.. +..+.-|.+.+|.....+..++. +-+
T Consensus 690 g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~l----------v~~ 759 (974)
T PTZ00398 690 SYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRKV----------VRE 759 (974)
T ss_pred CeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----------Hhc
Confidence 35789999855444445566 5566777444333322221111 22245555566555444433332 346
Q ss_pred CHHHHHHHHHHH
Q 009474 430 EATFISDLADAV 441 (534)
Q Consensus 430 sp~fI~~Lad~V 441 (534)
+|.|++.+.+..
T Consensus 760 ~~~fv~yf~~at 771 (974)
T PTZ00398 760 NPDFVPYFRSVT 771 (974)
T ss_pred CCCHHHHHHHhC
Confidence 888998887755
No 119
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=31.69 E-value=1.5e+02 Score=30.50 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=42.7
Q ss_pred cHHHHH---HHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEE-cCCCCCCHHHHHHHHH
Q 009474 371 YTDETI---IKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPALGCEATFISDLAD 439 (534)
Q Consensus 371 ~t~d~L---~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~r-vp~LNdsp~fI~~Lad 439 (534)
+|.+++ +...+.|++.|+++|+.|..-.-| ++-.-++++++..++.-+.| .+..+-+++.+..|++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~---~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQE---GLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 455554 455667999999999988653333 34344788887766654444 3455667777766654
No 120
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.56 E-value=2.8e+02 Score=28.99 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=33.3
Q ss_pred HHHhccCCCceEEEee--ecCCCCHHHHHHHHHHcCCCEEEEEecCCcc
Q 009474 203 KSLWEKNLPAKVYVGM--RYWHPFTEEAIEQIKRDGITKLVVLPLYPQF 249 (534)
Q Consensus 203 ~~L~~~g~~v~V~~AM--RY~~P~I~eaL~~L~~~G~~rIvvlPLyPqy 249 (534)
+.|.+.|+.+.|..-. +.....+.+.++.+.+.|++.+.+.|.||..
T Consensus 156 ~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 156 REAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 4445566665443322 3445668888889999999999999999854
No 121
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.41 E-value=3.3e+02 Score=27.79 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhc
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE 346 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg 346 (534)
+++|-+|.....+++.|.+.|.+.+.... .+.+++.+-|.+++.+.-+.+.+.+.
T Consensus 101 PH~Wldp~~~~~~a~~I~~~L~~~dP~~~------------~~y~~N~~~~~~~L~~l~~~~~~~l~ 155 (276)
T cd01016 101 PHIWFDVKLWKYAVKAVAEVLSEKLPEHK------------DEFQANSEAYVEELDSLDAYAKKKIA 155 (276)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999987642111 11113445688888777777776653
No 122
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=30.28 E-value=86 Score=31.76 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=40.4
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCC
Q 009474 365 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCE 430 (534)
Q Consensus 365 ~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNds 430 (534)
.+...|.+. +++.|.+.|+|+|.|+.|. ..|++...++.++++|++ ....-++|..
T Consensus 102 ~p~tt~~~A-~~~AL~alg~~RIalvTPY--------~~~v~~~~~~~l~~~G~e-V~~~~~~~~~ 157 (239)
T TIGR02990 102 TPVVTPSSA-AVDGLAALGVRRISLLTPY--------TPETSRPMAQYFAVRGFE-IVNFTCLGLT 157 (239)
T ss_pred CCeeCHHHH-HHHHHHHcCCCEEEEECCC--------cHHHHHHHHHHHHhCCcE-EeeeeccCCC
Confidence 455566554 7788888899999999763 355666678888999997 4455557764
No 123
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=30.13 E-value=5.8e+02 Score=25.65 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEE
Q 009474 327 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 390 (534)
Q Consensus 327 GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 390 (534)
||.+......-.+.+++++|+.. +-| =|-.+. ++.+ ++.+.|++.+++.
T Consensus 92 GdI~s~~qr~~~e~vc~~~gl~~------------~~P-LW~~d~-~~l~-e~i~~Gf~aiIv~ 140 (222)
T TIGR00289 92 GAIESNYQKSRIDKVCRELGLKS------------IAP-LWHADP-EKLM-YEVAEKFEVIIVS 140 (222)
T ss_pred CccccHHHHHHHHHHHHHcCCEE------------ecc-ccCCCH-HHHH-HHHHcCCeEEEEE
Confidence 56655555666778889988642 111 276666 5555 6778899887743
No 124
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=30.03 E-value=1.7e+02 Score=31.74 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=44.4
Q ss_pred hhHHhhhhcCCCCchHHHHHHHHHHHHHHHhccCCCceEEEeeec----CCCCHHHHHHHH---HHcCCCEEEEEec
Q 009474 176 KSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRY----WHPFTEEAIEQI---KRDGITKLVVLPL 245 (534)
Q Consensus 176 ks~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY----~~P~I~eaL~~L---~~~G~~rIvvlPL 245 (534)
.+.+.|..||--.||.+ |..|++.|. .++++|+=|.= +..-+..||.|. +.+|+++++-=.=
T Consensus 67 Ev~e~Y~~~gRPTPL~R-----A~~LE~~L~---tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETG 135 (432)
T COG1350 67 EVREAYLQIGRPTPLIR-----AKNLEEALG---TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETG 135 (432)
T ss_pred HHHHHHHHhCCCCchhh-----hhhHHHHhC---CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccC
Confidence 45788999998899986 445788884 46778876632 344567788775 5689998875544
No 125
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=29.58 E-value=49 Score=27.74 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEec
Q 009474 222 HPFTEEAIEQIKRDGITKLVVLPL 245 (534)
Q Consensus 222 ~P~I~eaL~~L~~~G~~rIvvlPL 245 (534)
.-.+.+.+++|++.|.+.|+++|+
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 466889999999999999999997
No 126
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=29.54 E-value=4.1e+02 Score=28.43 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEcccc-chhhhhhhHh----
Q 009474 330 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISF-VSEHIETLEE---- 404 (534)
Q Consensus 330 Y~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigF-vsDhlETL~E---- 404 (534)
-.+++...++...+ +|.+ +++++ |.+|=+..++.+.++.+++.|.+.|.+-.=|+ ..++...|.|
T Consensus 44 s~eei~~~~~~~~~-~Gv~----kvRlT-----GGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~ 113 (322)
T COG2896 44 SLEEIRRLVRAFAE-LGVE----KVRLT-----GGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLD 113 (322)
T ss_pred CHHHHHHHHHHHHH-cCcc----eEEEe-----CCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCc
Confidence 35666667766666 6654 35665 77888889999999998887777887776664 2233333222
Q ss_pred ----------------HH--------HHHHHHHHHcCCe----eEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 405 ----------------ID--------VEYKELALKSGIE----KWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 405 ----------------Id--------iE~rela~e~G~~----~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
|- ++.-+.|.+.|.. +.+.++.+|++. +..|++...+
T Consensus 114 rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~e--i~~l~e~~~~ 178 (322)
T COG2896 114 RVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDE--IEDLLEFAKE 178 (322)
T ss_pred EEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHH--HHHHHHHHhh
Confidence 11 2234667778875 677888888776 4456665543
No 127
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.24 E-value=4.4e+02 Score=26.38 Aligned_cols=136 Identities=13% Similarity=0.223 Sum_probs=70.8
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHH----HHHHHhccccCCCCE
Q 009474 279 IPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVD----LIMEELEKRKITNAY 354 (534)
Q Consensus 279 I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~----~v~e~Lg~~~~~~~~ 354 (534)
.-.|.+.+.+.+++. .+.+. . + .+=+ |+|.+..-.+|...++...++.+ .+.+++.. ....++
T Consensus 11 ~~G~p~~~~~~~~~~-~l~~~-a-----d--~iEl---gip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~-~~~~Pl 77 (244)
T PRK13125 11 TAGYPNVESFKEFII-GLVEL-V-----D--ILEL---GIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRK-DVSVPI 77 (244)
T ss_pred eCCCCCHHHHHHHHH-HHHhh-C-----C--EEEE---CCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhc-cCCCCE
Confidence 446778888887444 33333 2 1 1222 55666542344444444444321 12233311 111244
Q ss_pred E-EEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 009474 355 T-LAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 433 (534)
Q Consensus 355 ~-lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~f 433 (534)
. ++|-|-+ .-..++.++++.+.|+..|++.-. ++|+.+|++ +..+.++++|++... +=.++++++-
T Consensus 78 ~lM~y~n~~------~~~~~~~i~~~~~~Gadgvii~dl-----p~e~~~~~~-~~~~~~~~~Gl~~~~-~v~p~T~~e~ 144 (244)
T PRK13125 78 ILMTYLEDY------VDSLDNFLNMARDVGADGVLFPDL-----LIDYPDDLE-KYVEIIKNKGLKPVF-FTSPKFPDLL 144 (244)
T ss_pred EEEEecchh------hhCHHHHHHHHHHcCCCEEEECCC-----CCCcHHHHH-HHHHHHHHcCCCEEE-EECCCCCHHH
Confidence 2 3554421 135566788899999988887311 245444432 467778899997443 3345566666
Q ss_pred HHHHHHH
Q 009474 434 ISDLADA 440 (534)
Q Consensus 434 I~~Lad~ 440 (534)
++.+++.
T Consensus 145 l~~~~~~ 151 (244)
T PRK13125 145 IHRLSKL 151 (244)
T ss_pred HHHHHHh
Confidence 6665554
No 128
>PRK12677 xylose isomerase; Provisional
Probab=29.10 E-value=2.7e+02 Score=30.23 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=41.7
Q ss_pred EEEEEecC--cCCCCCCCCcHHHHHHHhhhcCCceEEEEc---cccchhhhhhhHhHHHHHHHHHHHcCCee
Q 009474 354 YTLAYQSR--VGPVEWLKPYTDETIIKLGQKGVKSLLAVP---ISFVSEHIETLEEIDVEYKELALKSGIEK 420 (534)
Q Consensus 354 ~~lafQSr--~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP---igFvsDhlETL~EIdiE~rela~e~G~~~ 420 (534)
|+++||.+ ||...=-.-+.++.++.+++.|++.|-+.. +-|-.+..|. ...-.+.++.+++.|++.
T Consensus 13 w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~-~~~~~~lk~~l~~~GL~v 83 (384)
T PRK12677 13 WTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAER-DRIIKRFKKALDETGLVV 83 (384)
T ss_pred eeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhh-HHHHHHHHHHHHHcCCee
Confidence 88998876 342210112689999999999999998763 2233333221 112334688888999973
No 129
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=28.93 E-value=2.3e+02 Score=28.92 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCCCHHH---HHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHH
Q 009474 221 WHPFTEE---AIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGY 288 (534)
Q Consensus 221 ~~P~I~e---aL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~y 288 (534)
+.|++.+ +.+++..+|+++|+++++- ..-+|++-. +..+.+.. ++.+++++++.....+.
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iS----s~LSgty~~-a~~aa~~~---~~~~i~ViDS~~~s~g~ 123 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITIS----SGLSGTYNS-ARLAAKML---PDIKIHVIDSKSVSAGQ 123 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-----TTT-THHHH-HHHHHHHH---TTTEEEEEE-SS-HHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCC----cchhhHHHH-HHHHHhhc---CcCEEEEEeCCCcchhh
Confidence 4577764 5556667999999999994 334444432 22222221 44578999987655443
No 130
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.89 E-value=7.5e+02 Score=26.50 Aligned_cols=130 Identities=14% Similarity=0.221 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 009474 286 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 365 (534)
Q Consensus 286 p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~ 365 (534)
..|++++.+.|+..++.... ..+.-||-.-|+|.-.- .+++.+.++.+.+.++... ..+++.-+.-+.
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~~-~~v~ti~~GGGtPs~l~-------~~~l~~ll~~l~~~~~~~~---~~eit~e~np~~- 104 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQG-REVHSIFIGGGTPSLFS-------AEAIQRLLDGVRARLPFAP---DAEITMEANPGT- 104 (378)
T ss_pred HHHHHHHHHHHHHHhHhccC-CceeEEEeCCCccccCC-------HHHHHHHHHHHHHhCCCCC---CcEEEEEeCcCc-
Confidence 55899998888765433221 23445665666664321 4667777777777665321 245665553322
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhh-----HhHHHHHHHHHHHcCCe--eEEEcCC-CCCCHH
Q 009474 366 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL-----EEIDVEYKELALKSGIE--KWGRVPA-LGCEAT 432 (534)
Q Consensus 366 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL-----~EIdiE~rela~e~G~~--~~~rvp~-LNdsp~ 432 (534)
-+.+.++.|++.|+.+|-+=-=+|-.+.+..+ .+-..+.-+.+++.|+. ++..+-. ++.+.+
T Consensus 105 -----l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~ 174 (378)
T PRK05660 105 -----VEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLE 174 (378)
T ss_pred -----CCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHH
Confidence 24578888888898887776666766655544 22234445677788885 3444444 444443
No 131
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=28.65 E-value=1e+02 Score=32.19 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 369 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
.+.+.++++++.+.|+|.++|+.=|| -|+ ...+.++.++++|+.
T Consensus 73 a~~v~~~l~e~~~~Gvk~avIis~Gf----~e~---~~~~l~~~a~~~gir 116 (286)
T TIGR01019 73 APFAADAIFEAIDAGIELIVCITEGI----PVH---DMLKVKRYMEESGTR 116 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC----CHH---HHHHHHHHHHHcCCE
Confidence 36789999999999999999999998 233 235578889999874
No 132
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.57 E-value=2.6e+02 Score=28.84 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 009474 195 DAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVV 242 (534)
Q Consensus 195 ~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvv 242 (534)
+.+++.+++.+.+.|+++.....+..........++++++.|.+-|++
T Consensus 152 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~ 199 (347)
T cd06335 152 RSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIII 199 (347)
T ss_pred hhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEE
Confidence 333444444444444333222222333344444444444444443333
No 133
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=28.49 E-value=1.8e+02 Score=27.35 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=24.5
Q ss_pred HhhhcCCceEEEEccccchhhhh---hhHhHHHHHHHHHHHcCCeeEEEcC
Q 009474 378 KLGQKGVKSLLAVPISFVSEHIE---TLEEIDVEYKELALKSGIEKWGRVP 425 (534)
Q Consensus 378 ~L~~~G~k~VvVvPigFvsDhlE---TL~EIdiE~rela~e~G~~~~~rvp 425 (534)
-+.+-|.++|++.|++=.|+.+. +=.+|=.+..+..++.|++ ..|+|
T Consensus 66 ~a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~e-V~raP 115 (138)
T PF08915_consen 66 VAKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFE-VYRAP 115 (138)
T ss_dssp HHHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-E-EEE--
T ss_pred HHHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCe-EEEeC
Confidence 34455889999999998776552 1222222234555678886 45666
No 134
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=28.47 E-value=85 Score=34.35 Aligned_cols=66 Identities=18% Similarity=0.345 Sum_probs=43.4
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 009474 366 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 433 (534)
Q Consensus 366 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~f 433 (534)
.|.+|.=.-.|+.+++.|++.||..-.-+-..-.=++.+| .+.|+..+++|.+ +..|+.++-|+.+
T Consensus 6 rw~gp~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i-~~~k~~ie~~GL~-~~vvEs~pv~e~I 71 (394)
T TIGR00695 6 RWYGPNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEI-RKRKEYIESAGLH-WSVVESVPVHEAI 71 (394)
T ss_pred eeeCCCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCCe-EEEEeCCCccHHH
Confidence 5777766667777777899999865322212222233333 2257778889986 8889998888754
No 135
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.98 E-value=3.9e+02 Score=27.25 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=35.1
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 210 LPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 210 ~~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
.+++|..+ =+..+++++++.. ++.|++-++++| |.|...+....++.+.++.+
T Consensus 69 ~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 69 GRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred CceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 35667776 4556899988865 457999998887 55556666555665655553
No 136
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=27.95 E-value=3.4e+02 Score=24.54 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEecCCccccc
Q 009474 222 HPFTEEAIEQIKRDGITKLVVLPLYPQFSIS 252 (534)
Q Consensus 222 ~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~ 252 (534)
.|++...+.-++..|+..++++=|||+++..
T Consensus 31 D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~ 61 (136)
T PF07799_consen 31 DPTIRRCINFARRWGYGGVIIVNLFPQRSTD 61 (136)
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEecccccCC
Confidence 4777788888888999999999999998763
No 137
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=27.76 E-value=5.9e+02 Score=25.64 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCcHHHHHH---HhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEE-cCC---CCCCHHHHHHHHH
Q 009474 369 KPYTDETII---KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPA---LGCEATFISDLAD 439 (534)
Q Consensus 369 ~P~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~r-vp~---LNdsp~fI~~Lad 439 (534)
..+|+++++ ...+.|+..|+++|+.|..-. -.++-.-++++++..+..-+.| .|. .+-+++++..|++
T Consensus 75 ~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~---~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 75 ANSTREAIELARHAEEAGADGVLVVPPYYNKPS---QEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC---HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 356666665 445669999999999987722 2445555788888766654433 443 4566777666654
No 138
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.56 E-value=3.8e+02 Score=27.49 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 009474 369 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 442 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~ 442 (534)
.--+++.++++++.|++.++|.-..+ |-..++.+.++++|+... ..=..++.++-++.+++.-.
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDLp~---------ee~~~~~~~~~~~gl~~I-~lvap~t~~eri~~i~~~s~ 166 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDLPP---------EEAEELRAAAKKHGLDLI-FLVAPTTTDERLKKIASHAS 166 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCCCH---------HHHHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHhCC
Confidence 34678899999999999988853332 223357888899999744 44467888888888777643
No 139
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=27.51 E-value=3e+02 Score=27.78 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=34.9
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
+++|..+- +..+++++++.. ++.|++-++++| |.|...+....++.+.++.+
T Consensus 66 ~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 66 RVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred CCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 56666665 567888888844 556999999977 45656555555555555554
No 140
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=27.48 E-value=2.4e+02 Score=29.78 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 373 DETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE---KWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 373 ~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~---~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
++.++.|++.|.+.++++- -||...+.|--.++-+.+.++|+. +.+..+.+||+.+-+..|.+.+.+
T Consensus 193 ~el~~~L~~~~~~~~~~~h----~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~ 262 (321)
T TIGR03821 193 SGLCDLLANSRLQTVLVVH----INHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFD 262 (321)
T ss_pred HHHHHHHHhcCCcEEEEee----CCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHH
Confidence 4666667766654443222 266654555566666777888986 345567779998877777776653
No 141
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=27.28 E-value=2.9e+02 Score=28.63 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=34.0
Q ss_pred CCceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 210 LPAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 210 ~~v~V~~AMRY~~P~I~eaL~~L~---~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
.+++|..+- +. ++.++++..+ +.|++.++++| |.|...+....++.+.++.+
T Consensus 75 ~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 75 GRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred CCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 356777777 44 8898888554 46999998877 44655555444454555444
No 142
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=27.19 E-value=1.9e+02 Score=29.80 Aligned_cols=68 Identities=18% Similarity=0.111 Sum_probs=44.8
Q ss_pred CCcHHHHHHH---hhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEE-cC---CCCCCHHHHHHHHH
Q 009474 369 KPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VP---ALGCEATFISDLAD 439 (534)
Q Consensus 369 ~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~r-vp---~LNdsp~fI~~Lad 439 (534)
..+|+|+++. ..+.|+..|+++||.|..-.- .+|-.-+++++...+...+.| .| ..+-+++++..|++
T Consensus 82 ~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~---~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 SVNTAEAQELAKYATELGYDAISAVTPFYYPFSF---EEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCH---HHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 3677777654 456799999999998876433 344334688888766655544 33 34556777766653
No 143
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.91 E-value=4e+02 Score=22.67 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=31.7
Q ss_pred ceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHH
Q 009474 385 KSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLA 438 (534)
Q Consensus 385 k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~La 438 (534)
-.+||++..|++-.+ .+. .++.|++.|.. +.++..-+-+ .|.++|.
T Consensus 49 aD~VIv~t~~vsH~~--~~~----vk~~akk~~ip-~~~~~~~~~~-~l~~~l~ 94 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNA--MWK----VKKAAKKYGIP-IIYSRSRGVS-SLERALE 94 (97)
T ss_pred CCEEEEEeCCcChHH--HHH----HHHHHHHcCCc-EEEECCCCHH-HHHHHHH
Confidence 368899999999665 455 78888899986 6676644433 4444444
No 144
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.23 E-value=2.6e+02 Score=25.14 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=47.2
Q ss_pred CCc-hHHHHHHHHHHHHHHHhccCCCceEEEeeec--------------CCCCHHHHHHHHHHcCCCEEEEEecCCcccc
Q 009474 187 GSP-LRRITDAQAEELRKSLWEKNLPAKVYVGMRY--------------WHPFTEEAIEQIKRDGITKLVVLPLYPQFSI 251 (534)
Q Consensus 187 gSP-L~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY--------------~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~ 251 (534)
||| -...|+..++.+.+.|.+.|.++++.---.| .++.+.+.++++.+ +|-||+. .|.|-.
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~--sP~y~~ 83 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFA--SPVYNG 83 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEE--EEEBTT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEe--ecEEcC
Confidence 566 6789999999999999877666655543333 34445555666655 5544443 244566
Q ss_pred cchHHHHHHHHHHH
Q 009474 252 STSGSSLRLLESIF 265 (534)
Q Consensus 252 ~TtGs~~~~l~e~~ 265 (534)
..+|.....++...
T Consensus 84 ~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 84 SVSGQLKNFLDRLS 97 (152)
T ss_dssp BE-HHHHHHHHTHH
T ss_pred cCChhhhHHHHHhc
Confidence 66777666665554
No 145
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.99 E-value=7.2e+02 Score=25.38 Aligned_cols=144 Identities=8% Similarity=0.059 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHcCCCEEEE-EecCCcccccchH----HHHHHHHHHHHhccc-cCCceEEEeCCCCCCHHHHHHHHHH
Q 009474 222 HPFTEEAIEQIKRDGITKLVV-LPLYPQFSISTSG----SSLRLLESIFREDEY-LVNMQHTVIPSWYQREGYITAMANL 295 (534)
Q Consensus 222 ~P~I~eaL~~L~~~G~~rIvv-lPLyPqyS~~TtG----s~~~~l~e~~~~~~~-~~~i~i~~I~~~~d~p~yI~Ala~~ 295 (534)
.+..+ .++...+.|++.|.+ +|..+.+.....+ ...+.+.+..+..+. -..+.+.....|...+.++..+++.
T Consensus 71 r~~~~-di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMD-DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHH-HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 34444 356666779997655 4554432222222 333334333332221 1234455566787888888777766
Q ss_pred HHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHH
Q 009474 296 IEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDET 375 (534)
Q Consensus 296 I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~ 375 (534)
+.+. + .+. +.+ .+..|--++.++.+.++.+.+.++. ++.+-+..-.| =.+..+
T Consensus 150 ~~~~----g-~~~--i~l---------~Dt~G~~~P~~v~~~~~~~~~~~~~-----~i~~H~Hn~~G------la~an~ 202 (262)
T cd07948 150 VDKL----G-VNR--VGI---------ADTVGIATPRQVYELVRTLRGVVSC-----DIEFHGHNDTG------CAIANA 202 (262)
T ss_pred HHHc----C-CCE--EEE---------CCcCCCCCHHHHHHHHHHHHHhcCC-----eEEEEECCCCC------hHHHHH
Confidence 5443 2 122 222 1234556888888899888887641 24333333333 335666
Q ss_pred HHHhhhcCCceEEEEcccc
Q 009474 376 IIKLGQKGVKSLLAVPISF 394 (534)
Q Consensus 376 L~~L~~~G~k~VvVvPigF 394 (534)
+..+ +.|++.|..-=-|+
T Consensus 203 ~~a~-~aG~~~vd~s~~Gl 220 (262)
T cd07948 203 YAAL-EAGATHIDTTVLGI 220 (262)
T ss_pred HHHH-HhCCCEEEEecccc
Confidence 6665 45777666544443
No 146
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=25.99 E-value=7.4e+02 Score=25.52 Aligned_cols=192 Identities=20% Similarity=0.255 Sum_probs=106.1
Q ss_pred HHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCE----EEEEecCCcccccchHHHHHHHHHHHHhccccCCceE
Q 009474 201 LRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITK----LVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQH 276 (534)
Q Consensus 201 L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~r----IvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i 276 (534)
|++.|+. .+=|.|.=+..|..-|++++...+.-++ ....+.| |+|-.-. ..+. +.
T Consensus 46 lr~kL~~----p~kY~giIfTSpR~VEa~~eaL~q~~tel~~~w~a~~vY------tVG~aT~---~si~--------~~ 104 (260)
T KOG4132|consen 46 LRAKLNN----PPKYAGIIFTSPRCVEALNEALIQTETELKAAWLAKHVY------TVGPATH---ASIR--------RL 104 (260)
T ss_pred HHHHhcC----chhhceeEEeChHHHHHHHHHhccccchhhhHHhhccee------eeccccH---HHHH--------Hh
Confidence 6666752 2337888889999999988776532110 0111111 1221111 0010 12
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEE
Q 009474 277 TVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTL 356 (534)
Q Consensus 277 ~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~l 356 (534)
-+++--+++-+=-+++++.|.+. +.......||| |.--. . -+-+..+|+-.++..+--.
T Consensus 105 ~~l~T~Ge~~gNa~~LaD~Ive~---~~~~~alPLLf-----pcGn~--~-----------rdil~kkL~~~G~~Vds~~ 163 (260)
T KOG4132|consen 105 GFLNTHGEDAGNAEILADLIVET---FTDKRALPLLF-----PCGNL--R-----------RDILPKKLHDKGIRVDSCE 163 (260)
T ss_pred cCccccccccccHHHHhHhhhhc---CCCcccCceEE-----Ecccc--h-----------hHHHHHHHHhCCceeeEEE
Confidence 23444566777778888888765 22222334676 32211 1 1234455543333334568
Q ss_pred EEecCcCCCCCCCCcHHHHHHH-hhhcC-CceEEEEccccchhhhhhhHhHHHH------------HHHHHHHcCCeeEE
Q 009474 357 AYQSRVGPVEWLKPYTDETIIK-LGQKG-VKSLLAVPISFVSEHIETLEEIDVE------------YKELALKSGIEKWG 422 (534)
Q Consensus 357 afQSr~G~~~WL~P~t~d~L~~-L~~~G-~k~VvVvPigFvsDhlETL~EIdiE------------~rela~e~G~~~~~ 422 (534)
+|+++-- |++..-++. +.+.| ..-|+++.|+=+..-++++.+.... -++..++.|.+...
T Consensus 164 VY~T~~h------p~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~~~ 237 (260)
T KOG4132|consen 164 VYETREH------PDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKVDV 237 (260)
T ss_pred EEeeeec------ccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCcce
Confidence 8998653 555444333 33433 4568888888777777777764433 36777899998887
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhC
Q 009474 423 RVPALGCEATFISDLADAVIESL 445 (534)
Q Consensus 423 rvp~LNdsp~fI~~Lad~V~e~L 445 (534)
..|.++ .+.|++.|....
T Consensus 238 vs~~P~-----pe~L~~~I~~~~ 255 (260)
T KOG4132|consen 238 VSPAPD-----PESLADAIELYQ 255 (260)
T ss_pred ecCCCC-----HHHHHHHHHhhh
Confidence 777665 456666665443
No 147
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.96 E-value=1.4e+02 Score=32.94 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=37.2
Q ss_pred CcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 370 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 370 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
..+.++++++.+.|+|.++++.=||-....| =.++..+..+.++++|+.
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~-g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEE-GAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcc-hHHHHHHHHHHHHHcCCE
Confidence 4678899999999999999999888763322 223455678888888875
No 148
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=25.74 E-value=1e+02 Score=32.53 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=32.7
Q ss_pred HHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEec
Q 009474 201 LRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPL 245 (534)
Q Consensus 201 L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPL 245 (534)
+.+.+++.|++..| .|=.=.+|+++|-++.+.+-+.++|++||=
T Consensus 108 ~~~lf~~~Gv~~vi-~ggqt~nPS~~dl~~Ai~~~~a~~VivLPN 151 (313)
T PF13684_consen 108 LAELFRSLGVDVVI-SGGQTMNPSTEDLLNAIEKVGADEVIVLPN 151 (313)
T ss_pred HHHHHHhCCCeEEE-eCCCCCCCCHHHHHHHHHhCCCCeEEEEeC
Confidence 56666555655433 333336899999999999999999999997
No 149
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=25.70 E-value=16 Score=35.72 Aligned_cols=58 Identities=29% Similarity=0.557 Sum_probs=44.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHH
Q 009474 276 HTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECV 338 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa 338 (534)
+..+..|.+++++++.|+..+++.|..|. ++.=++-..|+|..-+ ..|||..++.+.+
T Consensus 38 ~~L~~rY~~~~~Lv~~m~~LarEEL~HFe---qV~~im~~Rgi~l~~~--~~~~Ya~~L~k~v 95 (180)
T cd07910 38 MSLIFRYPEKPELVEAMSDLAREELQHFE---QVLKIMKKRGIPLGPD--SKDPYASGLRKLV 95 (180)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence 45678899999999999999999998763 2323456778887764 5689997776654
No 150
>PRK07945 hypothetical protein; Provisional
Probab=25.66 E-value=4.1e+02 Score=28.21 Aligned_cols=44 Identities=14% Similarity=-0.071 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEe
Q 009474 198 AEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLP 244 (534)
Q Consensus 198 a~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlP 244 (534)
...|..++. .++-+...+..+.-.+++.+++..+.|++.+.+-=
T Consensus 89 g~~l~~~~~---~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TD 132 (335)
T PRK07945 89 GGALRAALR---GDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTD 132 (335)
T ss_pred cHHHHHHHh---hhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeC
Confidence 455666654 24445555667888899999999999999888763
No 151
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=25.57 E-value=2.3e+02 Score=29.29 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=43.9
Q ss_pred cHHHHHHH---hhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEc-CCCCCCHHHHHHHHH
Q 009474 371 YTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRV-PALGCEATFISDLAD 439 (534)
Q Consensus 371 ~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rv-p~LNdsp~fI~~Lad 439 (534)
.|+++++. ..+.|+..|+++||.|..-.- .++-.-++++++..+..-+.|- +..+-+++.+..|++
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~---~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLINGEQ---EGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCH---HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 46666654 455799999999998765333 3444457888887766544443 445667887777765
No 152
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.44 E-value=6.5e+02 Score=25.91 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhccCCCceEEEe-------------------eecCC---CCHHHHHHHHHHcCCCEEEEEecCCcccc
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVG-------------------MRYWH---PFTEEAIEQIKRDGITKLVVLPLYPQFSI 251 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~A-------------------MRY~~---P~I~eaL~~L~~~G~~rIvvlPLyPqyS~ 251 (534)
|++....+.+.++++++++.|.+- |.+.+ |..++-+++|+++|++ +++-+.|..+.
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k--~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLK--VTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCE--EEEEeCCCccc
Confidence 456667788888888777554421 33322 8899999999999996 34445665322
Q ss_pred cchHHHHHHHHHHHHhcccc-CCceEEEeCCCCCCHHHHHHHHHHHHHHHHhC
Q 009474 252 STSGSSLRLLESIFREDEYL-VNMQHTVIPSWYQREGYITAMANLIEKELQNF 303 (534)
Q Consensus 252 ~TtGs~~~~l~e~~~~~~~~-~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~ 303 (534)
......++.+. +..... ......++ ++ .+|++.+.+-+.+.+.+...
T Consensus 101 ~~~~~~y~~~~---~~~~~~~~~~~~~~~-D~-tnp~a~~~w~~~~~~~~~~~ 148 (292)
T cd06595 101 RAHEDQYPEMA---KALGVDPATEGPILF-DL-TNPKFMDAYFDNVHRPLEKQ 148 (292)
T ss_pred CCCcHHHHHHH---HhcCCCcccCCeEEe-cC-CCHHHHHHHHHHHHHHHHhc
Confidence 11112223222 111110 11111222 33 57999998888887766554
No 153
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.03 E-value=3.9e+02 Score=29.01 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=40.8
Q ss_pred EEEEEecC--cCC--CCCCCCcHHHHHHHhhhcCCceEEEE-----ccccchhhhhhhHhHHHHHHHHHHHcCCee
Q 009474 354 YTLAYQSR--VGP--VEWLKPYTDETIIKLGQKGVKSLLAV-----PISFVSEHIETLEEIDVEYKELALKSGIEK 420 (534)
Q Consensus 354 ~~lafQSr--~G~--~~WL~P~t~d~L~~L~~~G~k~VvVv-----PigFvsDhlETL~EIdiE~rela~e~G~~~ 420 (534)
|+++||.+ ||. .+| .+..+.++++++.|++.|-+. |+......- .+.-.+.++.++++|++.
T Consensus 14 w~~~~~~~~~~g~~~~~~--~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~---~~~~~~lk~~L~~~GL~v 84 (382)
T TIGR02631 14 WTVGWVGRDPFGDATRTA--LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER---DQIVRRFKKALDETGLKV 84 (382)
T ss_pred eccCCCCCCCCCCCCCCC--cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH---HHHHHHHHHHHHHhCCeE
Confidence 88888876 443 344 478899999999999998765 222221111 111234688889999973
No 154
>PRK05367 glycine dehydrogenase; Provisional
Probab=25.01 E-value=62 Score=39.34 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=37.3
Q ss_pred cccccccccccCcchhhhhhccccccccCCCCCcccccCccch-h-hhhhhhHHHHHHHHHHHHHHH
Q 009474 454 SNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRS-A-ETWNGRAAMLAVLVLLVLEVT 518 (534)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~g~~~~-a-E~~NGR~AM~G~~~~~~~e~~ 518 (534)
.|.....++.|||||-... ...-.+.+--...| .++++. + |.--|++-|+-=+--.+.|+.
T Consensus 493 kn~~~~~~~i~lGsct~~~---~p~~~~~~~~~~~f-~~~hP~qp~e~~qG~l~~i~e~q~~l~elt 555 (954)
T PRK05367 493 KDLALDRSMIPLGSCTMKL---NAAAEMIPITWPEF-ANLHPFAPAEQAAGYRELIDQLEAWLAEIT 555 (954)
T ss_pred cCcCcccceeeCCcCCCcC---CHHHHHHHHhCccc-cccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456789999874422 11111111222222 356664 4 999999999998888888864
No 155
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.95 E-value=9.4e+02 Score=26.37 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHHHHHhhhcCCceEEEEccccchhhhhhhHh-----HHHHHHHHHHHcCCe
Q 009474 372 TDETIIKLGQKGVKSLLAVPISFVSEHIETLEE-----IDVEYKELALKSGIE 419 (534)
Q Consensus 372 t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E-----IdiE~rela~e~G~~ 419 (534)
+++.++.|++.|+.+|-|=-=+|-.+.++.+.- .-.+.-+.+++.|+.
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFT 202 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCC
Confidence 355666666666655544333344333333311 122334455566653
No 156
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=24.41 E-value=46 Score=23.05 Aligned_cols=20 Identities=45% Similarity=0.979 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 009474 9 TAPCPPSSCSTSSTFPPPPR 28 (534)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (534)
.|-|||..-|-...||.||.
T Consensus 4 ga~~pppeislna~fptppa 23 (32)
T PF07629_consen 4 GADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCCcceeccccCCChh
Confidence 57899999999999999984
No 157
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.30 E-value=1.4e+02 Score=27.51 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhccCC-CceEEEeeec--CCCCHHHHHHHHHHcCCCEEE
Q 009474 186 GGSPLRRITDAQAEELRKSLWEKNL-PAKVYVGMRY--WHPFTEEAIEQIKRDGITKLV 241 (534)
Q Consensus 186 ggSPL~~~T~~qa~~L~~~L~~~g~-~v~V~~AMRY--~~P~I~eaL~~L~~~G~~rIv 241 (534)
+-|-|+..|......+.+.|++.|. +++|.+|=-. .....++..++|++.|++++.
T Consensus 55 glS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 55 LVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred EEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEE
Confidence 4577888888888888888988776 6888887543 233446677889999999764
No 158
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=24.05 E-value=1.3e+02 Score=31.37 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=35.1
Q ss_pred CCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 369 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
.+.+.++++++.+.|+|.++|+.=||- +.| ..+.+++++++|+.
T Consensus 75 ~~~v~~~l~e~~~~gvk~avI~s~Gf~------~~~-~~~l~~~a~~~gir 118 (291)
T PRK05678 75 PPFAADAILEAIDAGIDLIVCITEGIP------VLD-MLEVKAYLERKKTR 118 (291)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC------HHH-HHHHHHHHHHcCCE
Confidence 367899999999999999999999984 121 13578889999874
No 159
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=24.00 E-value=1.7e+02 Score=27.54 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHH--------HHHHHHcCCCEEEEEec
Q 009474 192 RITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEA--------IEQIKRDGITKLVVLPL 245 (534)
Q Consensus 192 ~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~ea--------L~~L~~~G~~rIvvlPL 245 (534)
+.++..++.+++.|. | .+-.+.+|.|..-.-.+. .+++++.|.++|+++.-
T Consensus 35 E~~~~l~~~lErqfK--G-Rv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~ 93 (142)
T PF10673_consen 35 EFLRLLADELERQFK--G-RVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTS 93 (142)
T ss_pred HHHHHHHHHHHHhcC--c-eEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 445666666777775 2 577788888886654443 34777889999888865
No 160
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=23.71 E-value=7.2e+02 Score=29.54 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=60.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCCC-CceEEE-EeeCCc-------------chhhhccCCCchHHHHHHHHHH
Q 009474 276 HTVIPSWYQREGYITAMANLIEKELQNFDSP-EQVMIF-FSAHGV-------------PLAYVEEAGDPYKAEMEECVDL 340 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~-~~~~LL-FSaHGl-------------P~~~ie~~GDpY~~q~~eTa~~ 340 (534)
+.+-+.=+..-.|.-..+ |+.++...++. ..+.|| .||||+ |+... .+|..=..++.+-++.
T Consensus 600 ~s~QPNsGA~GEYaGL~~--IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~-~~G~id~~dLk~kaek 676 (1001)
T KOG2040|consen 600 FSLQPNSGAQGEYAGLRV--IRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCD-ANGNIDMVDLKAKAEK 676 (1001)
T ss_pred eeecCCCCcccchhhHHH--HHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeecc-CCCCccHHHHHHHHHH
Confidence 444455555566665544 66776554322 244555 899997 33333 4454445566666666
Q ss_pred HHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcC
Q 009474 341 IMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKG 383 (534)
Q Consensus 341 v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G 383 (534)
-++.|. .+.++|-|-.|- .+|.++|++.-..+-|
T Consensus 677 h~~~La------a~MvTYPST~Gv---fE~~i~d~cd~iHehG 710 (1001)
T KOG2040|consen 677 HKDNLA------ALMVTYPSTHGV---FEEGIDDICDIIHEHG 710 (1001)
T ss_pred hhhhhh------eeEEeccccccc---ccccHHHHHHHHHhcC
Confidence 666552 378999998884 4699999998887655
No 161
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.65 E-value=2.4e+02 Score=29.03 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 009474 192 RITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVV 242 (534)
Q Consensus 192 ~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvv 242 (534)
.+.+..++.+++.+.+.|.++.....+......+...+.++++.|++-|++
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~ 205 (362)
T cd06343 155 DFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVL 205 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEE
Confidence 445556666666666656554444444455556666667776666664443
No 162
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=23.59 E-value=3.1e+02 Score=27.54 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=18.9
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEE
Q 009474 220 YWHPFTEEAIEQIKRDGITKLVVL 243 (534)
Q Consensus 220 Y~~P~I~eaL~~L~~~G~~rIvvl 243 (534)
++.=.+++-+++.++.|.+.|.+-
T Consensus 12 d~~~~~ee~v~~A~~~Gl~~i~~T 35 (253)
T TIGR01856 12 HGTDTLEEVVQEAIQLGFEEICFT 35 (253)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEec
Confidence 455668888888888899888774
No 163
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.53 E-value=8.5e+02 Score=25.83 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCC--
Q 009474 227 EAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFD-- 304 (534)
Q Consensus 227 eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~-- 304 (534)
+++++|++.|+. ++.+| +|++.-..+.-++++-.++. -|.=-+++++.+++.++...
T Consensus 113 ~vl~qLraagV~-vv~v~--~~~~~~~i~~~Ir~vg~~lg------------------v~ekae~La~~~~~~l~a~~~~ 171 (300)
T COG4558 113 TVLDQLRAAGVP-VVTVP--EQPTLDGIGTKIRQVGQALG------------------VPEKAEKLAEQYEQRLEAVQAN 171 (300)
T ss_pred HHHHHHHHcCCc-EEEcC--CCCCHHHHHHHHHHHHHHhC------------------CcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999996 45555 77776655555555544432 22334455555554443321
Q ss_pred -----CCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHh
Q 009474 305 -----SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKL 379 (534)
Q Consensus 305 -----~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L 379 (534)
.|.++.+++|.-|- ...+ .|+-|. ++.|.+..|.-+ .....+=.+|.+.|.+.++
T Consensus 172 ~~~~~~~~~Vlfvls~~Gg-~~~v--aG~~t~------ad~iI~lAGG~~-----------a~~~~~~yKpls~EAliaa 231 (300)
T COG4558 172 VAAKKEPKKVLFVLSHGGG-APLV--AGKGTA------ADAIIELAGGVN-----------AAAGIEGYKPLSAEALIAA 231 (300)
T ss_pred cccccccceEEEEEecCCC-ceEe--ecCCcc------HHHHHHhccCcc-----------cccccccccccCHHHHhhc
Confidence 22343333333332 2222 455554 677888877311 1122222689999888776
Q ss_pred h
Q 009474 380 G 380 (534)
Q Consensus 380 ~ 380 (534)
.
T Consensus 232 ~ 232 (300)
T COG4558 232 N 232 (300)
T ss_pred C
Confidence 4
No 164
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=23.36 E-value=4.8e+02 Score=26.03 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEe---cCCcccccchHHHHHHHHHHH
Q 009474 189 PLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLP---LYPQFSISTSGSSLRLLESIF 265 (534)
Q Consensus 189 PL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlP---LyPqyS~~TtGs~~~~l~e~~ 265 (534)
=+-.+.+.|..+|++.|...++.+ . ..|-.=++.+| +|..-|..-+......+.++.
T Consensus 76 ~~g~~~d~q~~~l~~~l~~~gv~v--~------------------~~g~~~~l~~~~~i~F~~~sa~L~~~~~~~L~~ia 135 (219)
T PRK10510 76 GVGYYMDVQEAKLRDKMRGTGVSV--T------------------RSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVA 135 (219)
T ss_pred hhhhhhhhHHHHHHHHhhcCCcEE--E------------------EcCCeEEEEcCCCceeCCCCcccCHHHHHHHHHHH
Confidence 345666888889999997655443 1 12222223344 676666655555555555554
Q ss_pred HhccccCCceEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCc
Q 009474 266 REDEYLVNMQHTVIPSWYQ-------REGYITAMANLIEKELQNFDSPEQVMIFFSAHGV 318 (534)
Q Consensus 266 ~~~~~~~~i~i~~I~~~~d-------~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGl 318 (534)
.....++...+.+ ..+.| +..+=+.=++.+.++|...+.+.+ .|-...||-
T Consensus 136 ~~L~~~p~~~I~I-~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~G~G~ 193 (219)
T PRK10510 136 MVLKEYPKTAVNV-VGYTDSTGSHDLNMRLSQQRADSVASALITQGVDAS-RIRTQGMGP 193 (219)
T ss_pred HHHHhCCCceEEE-EEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCChh-hEEEEEEcC
Confidence 4433344433443 22222 233333445667777766553322 355566654
No 165
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=23.27 E-value=7.4e+02 Score=24.59 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCC
Q 009474 331 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGV 384 (534)
Q Consensus 331 ~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~ 384 (534)
..++++.++.-.++|+.+ ...+.+-............+-++|+++.++|.
T Consensus 92 ~~~~~~~l~~sL~~L~~~----~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ 141 (285)
T cd06660 92 PEHIRRAVEESLKRLGTD----YIDLYLLHWPDPDTPDIEETLRALEELVKEGK 141 (285)
T ss_pred HHHHHHHHHHHHHHhCCC----ceeEEEecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 455666777777777643 24444434333332234566777888888883
No 166
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.09 E-value=2.9e+02 Score=25.27 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHhccCCCceEEEeeecCCC-----CHHHHHHHHHHcCCCEEEEEecCCc
Q 009474 204 SLWEKNLPAKVYVGMRYWHP-----FTEEAIEQIKRDGITKLVVLPLYPQ 248 (534)
Q Consensus 204 ~L~~~g~~v~V~~AMRY~~P-----~I~eaL~~L~~~G~~rIvvlPLyPq 248 (534)
.+.+.|. +.|...+-++-| .+.+.++.+.+.|+++|.+.|+.|.
T Consensus 144 ~~~~~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 144 KLREAGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred HHHHhCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC
Confidence 3444452 344444444444 4555666677789999999998875
No 167
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=23.01 E-value=86 Score=38.33 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=32.8
Q ss_pred cccccccccccCcchhhhhhccccccccCCCCCcccccCccc-----hhhhhhhhHHHHHHHHHHHHHHH
Q 009474 454 SNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTR-----SAETWNGRAAMLAVLVLLVLEVT 518 (534)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~g~~~-----~aE~~NGR~AM~G~~~~~~~e~~ 518 (534)
.++....++.|||||-= .|+..--+ .|..-+ ||+. -.|..-|=+.|+-=+--.+.|++
T Consensus 519 ~~~~~~~~~~plgsctm---k~n~~~~~--~~~~~~--~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~ 581 (993)
T PLN02414 519 KDLSLVHSMIPLGSCTM---KLNATTEM--MPVTWP--EFANIHPFAPVDQAQGYQEMFEDLGDLLCEIT 581 (993)
T ss_pred cccccccCCccCccccc---ccCchhhh--hhhcCc--chhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555788999999843 22222222 122222 3333 25777787777766666666654
No 168
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.96 E-value=4.3e+02 Score=28.84 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=87.3
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEE
Q 009474 279 IPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAY 358 (534)
Q Consensus 279 I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~laf 358 (534)
...+..+..+...+..++... .++. +++-.||-= ..|.+.++++++.+.. .|... .++-++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~s------~~k~-vlvFvHGfN--------ntf~dav~R~aqI~~d-~g~~~--~pVvFSW 154 (377)
T COG4782 93 VVILQAEASFQTWLGAHISFS------SAKT-VLVFVHGFN--------NTFEDAVYRTAQIVHD-SGNDG--VPVVFSW 154 (377)
T ss_pred eeecccchhhhHHHhhhcccc------CCCe-EEEEEcccC--------CchhHHHHHHHHHHhh-cCCCc--ceEEEEc
Confidence 344566666666666554321 2332 555588852 3477777778765543 33322 2455556
Q ss_pred ecCc---------CCCCCCCCcHHHHHHHhhhcC-CceEEEEccccch-hhhhhhHhHHHHHHH-HHHHcCCeeEEEcCC
Q 009474 359 QSRV---------GPVEWLKPYTDETIIKLGQKG-VKSLLAVPISFVS-EHIETLEEIDVEYKE-LALKSGIEKWGRVPA 426 (534)
Q Consensus 359 QSr~---------G~~~WL~P~t~d~L~~L~~~G-~k~VvVvPigFvs-DhlETL~EIdiE~re-la~e~G~~~~~rvp~ 426 (534)
-|+. -..+|-.|.++.+|+.|++++ +++|.|+.-+--+ =-+|+|.-|.++..+ +-.+.+- ......
T Consensus 155 PS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~n--ViLAaP 232 (377)
T COG4782 155 PSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKN--VILAAP 232 (377)
T ss_pred CCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhh--eEeeCC
Confidence 5542 236899999999999999875 9999999876444 246778888888876 6555443 334444
Q ss_pred CCCCHHHHHHHHH
Q 009474 427 LGCEATFISDLAD 439 (534)
Q Consensus 427 LNdsp~fI~~Lad 439 (534)
=.|.+.|..-+..
T Consensus 233 DiD~DVF~~Q~~~ 245 (377)
T COG4782 233 DIDVDVFSSQIAA 245 (377)
T ss_pred CCChhhHHHHHHH
Confidence 4455566555444
No 169
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=22.60 E-value=8.1e+02 Score=24.78 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=51.7
Q ss_pred hhHHHHHHhhcCCC-CcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHHHHHHHHHhccCCCceE
Q 009474 136 EDVQPFLFNLFADP-DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKV 214 (534)
Q Consensus 136 ~dV~~fL~~~l~D~-~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~g~~v~V 214 (534)
.||.+-+..++.+. .|...- .|.++ ++...+.|.--.|..+| -.+|++ | =.|
T Consensus 13 ~Dv~p~l~~~l~~~v~i~e~G--------~LDgl-----s~~eI~~~aP~~ge~vL-----------vTrL~D-G--~~V 65 (221)
T PF07302_consen 13 TDVTPELTEILGEGVEIVEAG--------ALDGL-----SREEIAALAPEPGEYVL-----------VTRLRD-G--TQV 65 (221)
T ss_pred chhHHHHHHHcCCCceEEEec--------cCCCC-----CHHHHHHhCCCCCCcee-----------EEEeCC-C--CEE
Confidence 47788888888776 554411 22222 11222344443333222 233432 2 357
Q ss_pred EEeeecCCCCHHHHHHHHHHcCCCEEEEEec
Q 009474 215 YVGMRYWHPFTEEAIEQIKRDGITKLVVLPL 245 (534)
Q Consensus 215 ~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPL 245 (534)
.++=++-.|.+.+.++++.++|++-|+++..
T Consensus 66 ~ls~~~v~~~lq~~i~~le~~G~d~illlCT 96 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQLEAQGYDVILLLCT 96 (221)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCEEEEecc
Confidence 7888888999999999999999998888875
No 170
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.41 E-value=2.9e+02 Score=28.33 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=44.3
Q ss_pred CcHHHHHH---HhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHc-CCeeEEE-cC---CCCCCHHHHHHHHH
Q 009474 370 PYTDETII---KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKS-GIEKWGR-VP---ALGCEATFISDLAD 439 (534)
Q Consensus 370 P~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~-G~~~~~r-vp---~LNdsp~fI~~Lad 439 (534)
.+|+|+++ ...+.|+..|+++|+.|..-. -.+|-.-++++++.. +..-+.| .| ..+-+++++..|++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~---~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYKFS---FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 56666665 446679999999999876522 245544578888877 5554545 33 44567777776664
No 171
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.35 E-value=1.9e+02 Score=29.37 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCH
Q 009474 369 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA 431 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp 431 (534)
.|++. +++.|...|+++|.|..|. +.|+....++.++++|++ .....|||-.+
T Consensus 104 Tts~A-vv~aL~al~a~ri~vlTPY--------~~evn~~e~ef~~~~Gfe-iv~~~~Lgi~d 156 (238)
T COG3473 104 TTSTA-VVEALNALGAQRISVLTPY--------IDEVNQREIEFLEANGFE-IVDFKGLGITD 156 (238)
T ss_pred echHH-HHHHHHhhCcceEEEeccc--------hhhhhhHHHHHHHhCCeE-EEEeeccCCcc
Confidence 45554 7888888899999988654 356666678889999997 77888988544
No 172
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.15 E-value=2.1e+02 Score=29.84 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=42.8
Q ss_pred CcHHHHHH---HhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHc-CCeeEEE-cCCC---CCCHHHHHHHH
Q 009474 370 PYTDETII---KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKS-GIEKWGR-VPAL---GCEATFISDLA 438 (534)
Q Consensus 370 P~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~-G~~~~~r-vp~L---Ndsp~fI~~La 438 (534)
.+|+++++ ...+.|+..|+|+||.|..-.- .+|-.-++++++.. +..-+.| +|.. +-+++.+.-|+
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~---~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPLDV---DTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCH---HHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 45566654 4456799999999998765333 34444478898887 4665555 5533 55666666665
No 173
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.92 E-value=4.7e+02 Score=26.71 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHH---cCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKR---DGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~---~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
.++..+.++...+.-+.+++|..|- +..+++++++..+. .|++-|+++| |.|-..+-...++.+.++.+.
T Consensus 50 ~~Er~~~~~~~~~~~~~~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNGRVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAEE 122 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHhc
No 174
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.53 E-value=5.7e+02 Score=26.35 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=43.4
Q ss_pred CcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCee----EEEcCCCCCCHHHHHHHHHHHHHhC
Q 009474 370 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEK----WGRVPALGCEATFISDLADAVIESL 445 (534)
Q Consensus 370 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~----~~rvp~LNdsp~fI~~Lad~V~e~L 445 (534)
|+-.+.+++|.++|+|=|+.+-+..-.|.-+..|+ +.+++.|+.. ...+. =.+|++.+..-+.+.+.+
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~~D--~tnp~a~~~w~~~~~~~~ 145 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP------EMAKALGVDPATEGPILFD--LTNPKFMDAYFDNVHRPL 145 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH------HHHHhcCCCcccCCeEEec--CCCHHHHHHHHHHHHHHH
Confidence 99999999999999988887777653344333333 3444444321 11222 257888887767666554
Q ss_pred C
Q 009474 446 P 446 (534)
Q Consensus 446 ~ 446 (534)
.
T Consensus 146 ~ 146 (292)
T cd06595 146 E 146 (292)
T ss_pred H
Confidence 3
No 175
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=21.29 E-value=4.7e+02 Score=26.93 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHc---CCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 195 DAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRD---GITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 195 ~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~---G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
++..+.++...+..+.+++|..+-- ..+++++++..+.. |++-|+++| |.|...+....++.+.++.++
T Consensus 54 eEr~~~~~~~~~~~~~~~pvi~gv~--~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 54 EEKKEIFRIAKDEAKDQIALIAQVG--SVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIAE 125 (290)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEecC--CCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHhh
No 176
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.23 E-value=4.7e+02 Score=26.96 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=33.8
Q ss_pred CceEEEeeecCCCCHHHHHHHHHH---cCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQIKR---DGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L~~---~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
+++|..+-- . +++++++..+. .|++.++++| |.|...+-...++.+.++.+
T Consensus 74 ~~pvi~gv~--~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 74 KVPVYTGVG--G-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCE 127 (296)
T ss_pred CCcEEEecC--c-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 567777763 3 58999886644 7999998877 55655555555555555544
No 177
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.94 E-value=4.9e+02 Score=26.86 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=34.5
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
+++|..|- +..+++|+++.. .+.|++-++++| |.|...+-...++.+.++.++
T Consensus 69 ~~pvi~gv--~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 69 RIPFAPGT--GALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred CCcEEEEC--CcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHHh
Confidence 45665543 447788887754 446999999998 556665555555555555543
No 178
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.88 E-value=1.1e+03 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=19.5
Q ss_pred CCcHHHHHHHhhhcCCceEEEE----ccccchhh
Q 009474 369 KPYTDETIIKLGQKGVKSLLAV----PISFVSEH 398 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVv----PigFvsDh 398 (534)
.|...+.|+++.+.|+.+.-|+ |++|..|-
T Consensus 465 s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s~d~ 498 (557)
T PRK13505 465 SPKAKKQLKQIEKNGWDKLPVCMAKTQYSFSDDP 498 (557)
T ss_pred CHHHHHHHHHHHHcCCCCCCeEEEccCCCcCCCh
Confidence 5667777777777777775554 55665543
No 179
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.79 E-value=2.9e+02 Score=22.27 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEec
Q 009474 193 ITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPL 245 (534)
Q Consensus 193 ~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPL 245 (534)
....++..+.+.|+..|..+ .+ -+...++...++.....|+.-++++--
T Consensus 12 ~~~~~a~~~~~~Lr~~g~~v--~~--d~~~~~~~~~~~~a~~~g~~~~iiig~ 60 (91)
T cd00860 12 EHLDYAKEVAKKLSDAGIRV--EV--DLRNEKLGKKIREAQLQKIPYILVVGD 60 (91)
T ss_pred hHHHHHHHHHHHHHHCCCEE--EE--ECCCCCHHHHHHHHHHcCCCEEEEECc
Confidence 34556777888887766544 33 234568999999999999998888763
No 180
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=20.52 E-value=1.9e+02 Score=30.98 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHh
Q 009474 282 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEEL 345 (534)
Q Consensus 282 ~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~L 345 (534)
.+.+....+.++..|+.+|.... |.+ .|++|+||=+ ..|.-|. ++.|++.+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~-p~K-PLvLSfHG~t-----GTGKN~V------a~iiA~n~ 134 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN-PRK-PLVLSFHGWT-----GTGKNYV------AEIIAENL 134 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC-CCC-CeEEEecCCC-----CCchhHH------HHHHHHHH
Confidence 34456677778888888886543 455 5999999976 5566677 44555554
No 181
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.50 E-value=3.3e+02 Score=28.22 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=42.4
Q ss_pred cHHHHH---HHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEE-cCCCCCCHHHHHHHH
Q 009474 371 YTDETI---IKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPALGCEATFISDLA 438 (534)
Q Consensus 371 ~t~d~L---~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~r-vp~LNdsp~fI~~La 438 (534)
+|.+++ +...+.|+..|+++|+.|..-.- .+|-.-++++++..+..-+.| .|..+-+++.+..|+
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~---~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQ---EGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCH---HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 555555 44566799999999998764332 444445788888776654444 344556777776666
No 182
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.46 E-value=2.3e+02 Score=27.40 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEcccc
Q 009474 326 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISF 394 (534)
Q Consensus 326 ~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigF 394 (534)
.+++|..++.+.++..++++|.. +.+.+-+. .-.....+.++++..+|+.-|++.|..-
T Consensus 8 ~~~~~~~~~~~g~~~~a~~~g~~-----~~~~~~~~-----~d~~~q~~~i~~~i~~~~d~Iiv~~~~~ 66 (257)
T PF13407_consen 8 MDNPFWQQVIKGAKAAAKELGYE-----VEIVFDAQ-----NDPEEQIEQIEQAISQGVDGIIVSPVDP 66 (257)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTCE-----EEEEEEST-----TTHHHHHHHHHHHHHTTESEEEEESSST
T ss_pred CCCHHHHHHHHHHHHHHHHcCCE-----EEEeCCCC-----CCHHHHHHHHHHHHHhcCCEEEecCCCH
Confidence 35789999999999999988642 33322222 2235566778888888888888877653
No 183
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=20.45 E-value=3.1e+02 Score=29.02 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=42.6
Q ss_pred HHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 372 TDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE---KWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 372 t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~---~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
+++.++.|.+.|.+.+++. -.+|-..+.+--.++-+.+.++|+. +++.+...||+++-.+.|.+.+.+
T Consensus 209 t~el~~~L~~~~~~~~~vs----h~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~ 279 (331)
T TIGR00238 209 TDELCELLASFELQLMLVT----HINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFK 279 (331)
T ss_pred CHHHHHHHHhcCCcEEEEc----cCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhh
Confidence 5567777777676444332 1144322344444555666788886 467888999999877777776553
No 184
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=20.36 E-value=5.2e+02 Score=25.66 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=10.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Q 009474 276 HTVIPSWYQREGYITAMANLIEK 298 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~ 298 (534)
+.+|+.-+.|...+++.++.+++
T Consensus 103 ivivngHgGN~~~l~~~~~~l~~ 125 (237)
T PF02633_consen 103 IVIVNGHGGNIAALEAAARELRQ 125 (237)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHH
T ss_pred EEEEECCHhHHHHHHHHHHHHHh
Confidence 34444444444444444444433
No 185
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=20.34 E-value=6.3e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhccCCCce
Q 009474 192 RITDAQAEELRKSLWEKNLPAK 213 (534)
Q Consensus 192 ~~T~~qa~~L~~~L~~~g~~v~ 213 (534)
-.|++.|++|++.|.+.|.+++
T Consensus 12 GnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 12 GNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred ChHHHHHHHHHHHHhhCCeeEE
Confidence 3699999999999987665543
No 186
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.30 E-value=2.3e+02 Score=30.09 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=31.5
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHh-ccCCCceEEEeeecCCC--CHHHHHHHHHHcCCCEEE
Q 009474 184 IGGGSPLR---RITDAQAEELRKSLW-EKNLPAKVYVGMRYWHP--FTEEAIEQIKRDGITKLV 241 (534)
Q Consensus 184 IgggSPL~---~~T~~qa~~L~~~L~-~~g~~v~V~~AMRY~~P--~I~eaL~~L~~~G~~rIv 241 (534)
+|||.|.. ..-.+..+.|++.+. ..+ . .+.+. .+| .-++.++.|++.|+++|-
T Consensus 57 ~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~--~--eitie-~np~~lt~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 57 IGGGTPNTLSVEAFERLFESIYQHASLSDD--C--EITTE-ANPELITAEWCKGLKGAGINRLS 115 (360)
T ss_pred eCCCchhcCCHHHHHHHHHHHHHhCCCCCC--C--EEEEE-eCCCCCCHHHHHHHHHcCCCEEE
Confidence 49999975 444445555555443 112 2 22331 234 456889999999999774
No 187
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=20.23 E-value=3.4e+02 Score=25.71 Aligned_cols=66 Identities=20% Similarity=0.102 Sum_probs=41.8
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCC---CHHHHHHHHHHH
Q 009474 365 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGC---EATFISDLADAV 441 (534)
Q Consensus 365 ~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNd---sp~fI~~Lad~V 441 (534)
.+| .....+-+++|.+.|+++|+-+. |..|+ .+.++..|+. |...|..+. +.+.++.+.+.+
T Consensus 23 ~P~-~~~~~~~l~~L~~~gI~~Iv~l~--------~~~~~-----~~~~~~~gi~-~~~~p~~D~~~P~~~~i~~~~~~i 87 (166)
T PTZ00242 23 APS-PSNLPLYIKELQRYNVTHLVRVC--------GPTYD-----AELLEKNGIE-VHDWPFDDGAPPPKAVIDNWLRLL 87 (166)
T ss_pred CCC-cccHHHHHHHHHhCCCeEEEecC--------CCCCC-----HHHHHHCCCE-EEecCCCCCCCCCHHHHHHHHHHH
Confidence 443 45777889999999999999762 11222 2345678886 778886544 333455555555
Q ss_pred HHhC
Q 009474 442 IESL 445 (534)
Q Consensus 442 ~e~L 445 (534)
.+.+
T Consensus 88 ~~~~ 91 (166)
T PTZ00242 88 DQEF 91 (166)
T ss_pred HHHH
Confidence 5543
No 188
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=20.19 E-value=4.8e+02 Score=27.56 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCc
Q 009474 292 MANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPY 371 (534)
Q Consensus 292 la~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~ 371 (534)
+.+.+.+++..+.. .=.+.|.+.++ ...|.+-.+++.+.+++-++.. .++++.|-+-.|. =.
T Consensus 7 v~~~~~~~~~~~~~-----~~~~~~~~~hr-----~~~f~~~~~~~~~~l~~l~~~~---~~~~v~~~~gsgT-----~a 68 (349)
T TIGR01364 7 VLEQAQKELLNFNG-----TGMSVMEISHR-----SKEFEAVANEAESDLRELLNIP---DNYEVLFLQGGAT-----GQ 68 (349)
T ss_pred HHHHHHHHHhCccC-----CCccccccCCC-----chHHHHHHHHHHHHHHHHhCCC---CCceEEEEcCCch-----HH
Confidence 34444456654431 11255555444 2447777777888888877642 2478888764453 34
Q ss_pred HHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCC
Q 009474 372 TDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGI 418 (534)
Q Consensus 372 t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~ 418 (534)
.+-++..|.+.| ++++++-.|.++++. .++++..|.
T Consensus 69 ~ea~~~nl~~~~-~~~l~i~~G~fg~r~----------~~~a~~~g~ 104 (349)
T TIGR01364 69 FAAVPLNLLAEG-KVADYIVTGAWSKKA----------AKEAKKYGV 104 (349)
T ss_pred HHHHHHhcCCCC-CeEEEEECCHHHHHH----------HHHHHHhCC
Confidence 566777777655 678888889999888 456667776
No 189
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.14 E-value=2.8e+02 Score=28.20 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=41.5
Q ss_pred CcHHHHHHH---hhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEE-cC---CCCCCHHHHHHHHH
Q 009474 370 PYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VP---ALGCEATFISDLAD 439 (534)
Q Consensus 370 P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~r-vp---~LNdsp~fI~~Lad 439 (534)
++++++++. ..+.|++.|+++|+.|..-.- .++-.-++++++..+..-+.| .| ...-++++++.|++
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~---~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQ---EGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCCCH---HHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 567776654 456699999999998765322 344444788888766665544 33 22345666555543
Done!