Query 009474
Match_columns 534
No_of_seqs 320 out of 1634
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcn_A Ferrochelatase, mitocho 100.0 1.2E-90 4.3E-95 724.3 38.3 340 119-468 2-347 (359)
2 1lbq_A Ferrochelatase; rossman 100.0 3.1E-88 1.1E-92 707.6 29.8 319 119-447 5-328 (362)
3 2h1v_A Ferrochelatase; rossman 100.0 1E-78 3.6E-83 623.9 33.9 302 118-446 2-309 (310)
4 2xvy_A Chelatase, putative; me 100.0 2E-33 6.8E-38 280.9 21.1 208 211-446 41-266 (269)
5 2jh3_A Ribosomal protein S2-re 100.0 1.2E-28 3.9E-33 265.6 13.9 239 184-451 9-271 (474)
6 2xwp_A Sirohydrochlorin cobalt 99.9 3.6E-26 1.2E-30 228.8 23.0 228 187-446 11-257 (264)
7 3lyh_A Cobalamin (vitamin B12) 99.0 3.1E-09 1E-13 94.3 14.0 116 309-446 6-122 (126)
8 3lyh_A Cobalamin (vitamin B12) 98.9 1.1E-08 3.6E-13 90.8 11.2 110 185-302 12-123 (126)
9 1tjn_A Sirohydrochlorin cobalt 98.8 7.6E-09 2.6E-13 95.7 8.6 98 194-302 43-149 (156)
10 2xws_A Sirohydrochlorin cobalt 98.8 1.7E-08 5.6E-13 89.8 10.5 118 309-446 4-127 (133)
11 2xws_A Sirohydrochlorin cobalt 98.8 2E-08 6.7E-13 89.3 9.7 109 185-301 10-127 (133)
12 1tjn_A Sirohydrochlorin cobalt 98.6 1.8E-07 6.2E-12 86.4 10.8 117 309-447 25-149 (156)
13 2xvy_A Chelatase, putative; me 98.2 9.5E-06 3.3E-10 80.4 13.6 127 308-447 9-141 (269)
14 2h1v_A Ferrochelatase; rossman 97.9 7.4E-05 2.5E-09 76.3 12.9 74 369-448 90-168 (310)
15 2xwp_A Sirohydrochlorin cobalt 97.9 5.6E-05 1.9E-09 75.1 11.3 122 310-447 4-133 (264)
16 2jh3_A Ribosomal protein S2-re 97.9 1.1E-05 3.6E-10 87.2 6.0 121 309-447 4-136 (474)
17 1lbq_A Ferrochelatase; rossman 97.7 0.00016 5.3E-09 75.6 11.4 78 368-448 107-189 (362)
18 2bhw_A Chlorophyll A-B binding 97.6 3.5E-05 1.2E-09 75.9 3.7 35 494-528 176-210 (232)
19 3pl9_A Chlorophyll A-B binding 97.5 6E-05 2E-09 74.4 3.7 37 492-528 191-227 (243)
20 3hcn_A Ferrochelatase, mitocho 97.3 0.0012 4.1E-08 68.8 11.3 113 185-303 207-328 (359)
21 2wsc_2 LHCA2, type II chloroph 97.3 3.5E-05 1.2E-09 77.3 -0.4 38 491-528 214-251 (269)
22 2wsc_3 LHCA3, type II chloroph 97.2 6.1E-05 2.1E-09 75.8 0.4 37 492-528 222-258 (276)
23 2wsc_1 AT3G54890, LHCA1; photo 96.9 0.00018 6.2E-09 71.1 0.4 37 493-529 186-223 (241)
24 2wsc_4 Chlorophyll A-B binding 96.6 0.00021 7.3E-09 71.0 -1.4 37 489-525 86-122 (251)
25 2wsc_3 LHCA3, type II chloroph 95.7 0.00024 8.2E-09 71.5 -6.2 33 492-524 97-129 (276)
26 3pl9_A Chlorophyll A-B binding 95.4 0.0064 2.2E-07 60.0 2.7 31 491-521 89-119 (243)
27 2wsc_4 Chlorophyll A-B binding 95.3 0.0044 1.5E-07 61.6 1.2 33 495-528 201-233 (251)
28 2wsc_2 LHCA2, type II chloroph 95.0 0.0076 2.6E-07 60.4 1.9 35 490-524 98-132 (269)
29 2bhw_A Chlorophyll A-B binding 93.3 0.03 1E-06 55.0 2.2 30 493-522 60-89 (232)
30 2wsc_1 AT3G54890, LHCA1; photo 74.7 0.14 4.8E-06 50.5 -4.6 27 493-519 82-108 (241)
31 3hh8_A Metal ABC transporter s 53.0 45 0.0015 33.0 8.8 139 280-441 123-285 (294)
32 3rpe_A MDAB, modulator of drug 47.2 66 0.0022 30.7 8.6 70 191-266 42-111 (218)
33 1pq4_A Periplasmic binding pro 45.0 1.1E+02 0.0037 30.1 10.1 130 280-439 132-279 (291)
34 3bdk_A D-mannonate dehydratase 39.0 33 0.0011 35.7 5.4 66 365-432 25-91 (386)
35 3ff4_A Uncharacterized protein 38.7 19 0.00065 31.3 3.0 38 371-419 70-107 (122)
36 1uta_A FTSN, MSGA, cell divisi 38.5 16 0.00055 29.0 2.4 47 195-241 20-75 (81)
37 3p6l_A Sugar phosphate isomera 37.5 1.4E+02 0.0047 27.8 9.2 21 371-391 23-43 (262)
38 4b4o_A Epimerase family protei 36.8 56 0.0019 31.2 6.4 35 122-158 212-248 (298)
39 3rjz_A N-type ATP pyrophosphat 34.1 1.2E+02 0.004 29.4 8.2 135 214-390 7-146 (237)
40 3vni_A Xylose isomerase domain 33.3 2.6E+02 0.0088 26.2 10.5 62 355-421 3-64 (294)
41 1x60_A Sporulation-specific N- 33.2 36 0.0012 26.5 3.6 45 195-239 20-73 (79)
42 1xvl_A Mn transporter, MNTC pr 30.0 2.5E+02 0.0087 27.9 10.2 144 280-446 144-314 (321)
43 3gi1_A LBP, laminin-binding pr 29.0 2.9E+02 0.0099 26.9 10.2 136 280-441 121-278 (286)
44 2qv5_A AGR_C_5032P, uncharacte 28.5 4.2E+02 0.015 25.8 14.4 88 211-298 54-153 (261)
45 2hk0_A D-psicose 3-epimerase; 28.3 2.9E+02 0.0098 26.4 10.0 66 354-424 21-86 (309)
46 3lub_A Putative creatinine ami 27.8 1E+02 0.0034 30.0 6.5 51 195-245 48-119 (254)
47 2nly_A BH1492 protein, diverge 27.2 4.1E+02 0.014 25.7 10.7 89 210-298 26-126 (245)
48 3ujp_A Mn transporter subunit; 27.0 3.9E+02 0.013 26.5 10.9 142 280-446 130-300 (307)
49 2hl0_A Threonyl-tRNA synthetas 26.8 1.4E+02 0.0048 26.9 6.7 45 380-425 69-116 (143)
50 3nav_A Tryptophan synthase alp 26.0 2E+02 0.007 28.2 8.4 62 371-442 113-174 (271)
51 1o7d_A Lysosomal alpha-mannosi 25.9 78 0.0027 31.6 5.4 101 333-440 47-162 (298)
52 3fkr_A L-2-keto-3-deoxyarabona 25.8 2.5E+02 0.0086 27.8 9.2 54 210-267 76-135 (309)
53 1tz9_A Mannonate dehydratase; 25.5 1.1E+02 0.0037 30.7 6.5 65 365-431 15-81 (367)
54 3cx3_A Lipoprotein; zinc-bindi 25.2 2.5E+02 0.0087 27.2 9.0 136 280-441 119-276 (284)
55 2prs_A High-affinity zinc upta 24.6 2.3E+02 0.008 27.4 8.6 136 280-441 116-274 (284)
56 3ha2_A NADPH-quinone reductase 23.8 4.1E+02 0.014 24.0 10.2 47 214-264 31-77 (177)
57 3nyi_A FAT acid-binding protei 23.5 92 0.0031 30.9 5.4 61 221-288 66-131 (297)
58 3pl5_A SMU_165, putative uncha 23.3 1E+02 0.0035 31.1 5.8 61 221-288 97-162 (320)
59 2hpv_A FMN-dependent NADH-azor 23.2 1.8E+02 0.0061 26.2 7.0 23 187-209 9-34 (208)
60 2ehh_A DHDPS, dihydrodipicolin 22.7 3.9E+02 0.014 26.0 9.9 53 211-267 69-124 (294)
61 3cpr_A Dihydrodipicolinate syn 22.2 4.1E+02 0.014 26.1 9.9 53 211-267 85-140 (304)
62 3jr7_A Uncharacterized EGV fam 22.2 1.9E+02 0.0065 28.6 7.5 63 220-289 80-144 (298)
63 1t5b_A Acyl carrier protein ph 22.1 3.5E+02 0.012 23.8 8.7 23 187-209 9-33 (201)
64 2ojp_A DHDPS, dihydrodipicolin 22.0 3.4E+02 0.011 26.5 9.2 52 211-266 70-124 (292)
65 3ldt_A Outer membrane protein, 21.8 4.3E+02 0.015 23.6 9.4 110 187-318 17-135 (169)
66 3lup_A DEGV family protein; PS 21.6 63 0.0022 31.9 3.7 60 221-288 65-127 (285)
67 2o1e_A YCDH; alpha-beta protei 21.4 3E+02 0.01 27.2 8.8 122 280-427 132-271 (312)
68 3qze_A DHDPS, dihydrodipicolin 21.0 4.2E+02 0.014 26.2 9.8 70 194-267 75-147 (314)
69 3lmz_A Putative sugar isomeras 21.0 3.2E+02 0.011 25.2 8.5 45 373-423 64-108 (257)
70 3flu_A DHDPS, dihydrodipicolin 20.8 4.4E+02 0.015 25.7 9.8 70 194-267 59-131 (297)
71 2yxg_A DHDPS, dihydrodipicolin 20.4 4.1E+02 0.014 25.8 9.5 53 211-267 69-124 (289)
72 2wkj_A N-acetylneuraminate lya 20.4 4.1E+02 0.014 26.1 9.5 53 210-266 79-134 (303)
73 1xky_A Dihydrodipicolinate syn 20.4 4.3E+02 0.015 25.9 9.6 52 211-266 81-135 (301)
74 1f6k_A N-acetylneuraminate lya 20.3 4.2E+02 0.014 25.8 9.5 52 211-266 73-127 (293)
75 3daq_A DHDPS, dihydrodipicolin 20.2 4.2E+02 0.014 25.8 9.5 70 194-267 54-126 (292)
76 1olt_A Oxygen-independent copr 20.1 7.2E+02 0.025 25.6 17.4 140 286-443 83-231 (457)
77 3l21_A DHDPS, dihydrodipicolin 20.1 3.7E+02 0.013 26.4 9.1 70 194-267 67-139 (304)
No 1
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=100.00 E-value=1.2e-90 Score=724.27 Aligned_cols=340 Identities=42% Similarity=0.688 Sum_probs=308.6
Q ss_pred CCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHH
Q 009474 119 DEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQA 198 (534)
Q Consensus 119 ~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa 198 (534)
++|+||||||||||++++||++||+|||+|++||++|. +++|+++|+++|++|++++|+.|||||||+.+|++|+
T Consensus 2 ~~k~gVLL~nlG~P~~~~~V~~fL~~~~~d~~Vi~~P~-----~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~ 76 (359)
T 3hcn_A 2 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPI-----QNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQG 76 (359)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHHTCTTTCCCTT-----HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHccCCcccccch-----HHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 56899999999999999999999999999999999983 4689999999999999999999999999999999999
Q ss_pred HHHHHHHhccC---CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCce
Q 009474 199 EELRKSLWEKN---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQ 275 (534)
Q Consensus 199 ~~L~~~L~~~g---~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~ 275 (534)
++|++.|++.+ .+++|++|||||+|+|+++|++|+++|+++|+++|||||||.+||||+++++.+.+++.+..+.++
T Consensus 77 ~~L~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~ 156 (359)
T 3hcn_A 77 EGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMK 156 (359)
T ss_dssp HHHHHHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSE
T ss_pred HHHHHHHhhhcccccCceEEEEEeeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHHHHHHHhccCCCCc
Confidence 99999998643 468999999999999999999999999999999999999999999999999988887665556678
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCCC--CceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCC
Q 009474 276 HTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNA 353 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~--~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~ 353 (534)
+++|++|++||+||+|++++|++++++++.+ ++++|||||||+|++++ ++||||.+||++|+++|+++||.. ++
T Consensus 157 ~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~~~LlfSaHgiP~~~~-~~GDpY~~q~~~t~~lv~e~Lg~~---~~ 232 (359)
T 3hcn_A 157 WSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVV-NRGDPYPQEVSATVQKVMERLEYC---NP 232 (359)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHTTSCTTTGGGCEEEEEEECCBHHHH-TTTCSHHHHHHHHHHHHHHHTTTC---SC
T ss_pred eEEeCCccCCHHHHHHHHHHHHHHHHhCCccccCCcEEEEEcCCChHhhc-ccCCCHHHHHHHHHHHHHHHcCCC---CC
Confidence 9999999999999999999999999887532 45689999999999999 899999999999999999999864 46
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHH-HHHHHHcCCeeEEEcCCCCCCHH
Q 009474 354 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEY-KELALKSGIEKWGRVPALGCEAT 432 (534)
Q Consensus 354 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~-rela~e~G~~~~~rvp~LNdsp~ 432 (534)
|.++||||+|+.+||+|+|+|+|++|+++|+|+|+|+|||||+||+|||+|||+|+ +++|+++|++.|.|+||||+||.
T Consensus 233 ~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~P~gFvsD~lETL~Eid~E~~~e~a~e~G~~~~~rip~LNd~p~ 312 (359)
T 3hcn_A 233 YRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPL 312 (359)
T ss_dssp EEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEECTTCCSCCCCCHHHHCHHHHHHHHHHTCCCEEEECCCSTTCHH
T ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccchhhHHhHHHHHHHHHHHHHHhCCCceEEEcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999998 58999999988999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcccccccccccccccCcch
Q 009474 433 FISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSV 468 (534)
Q Consensus 433 fI~~Lad~V~e~L~~~~~~~~~~~~~~~~~~~~~~~ 468 (534)
||++|+++|.+++.. +.........|+...-...|
T Consensus 313 fi~~La~lv~~~l~~-~~~~~~~~~~~c~~c~~~~~ 347 (359)
T 3hcn_A 313 FSKALADLVHSHIQS-NELCSKQLTLSCPLCVNPVC 347 (359)
T ss_dssp HHHHHHHHHHHHHHH-TCSSCGGGGSCCTTCCCHHH
T ss_pred HHHHHHHHHHHHHhc-CCccCcccCCCCCCCCchhh
Confidence 999999999998875 22222344445543333333
No 2
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=100.00 E-value=3.1e-88 Score=707.60 Aligned_cols=319 Identities=39% Similarity=0.635 Sum_probs=300.5
Q ss_pred CCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHHH
Q 009474 119 DEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQA 198 (534)
Q Consensus 119 ~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa 198 (534)
++|+||||||||||++++||++||+|||+|++||++|++ | +++|+++|+++|++|++++|+.|||||||+.+|++|+
T Consensus 5 ~~k~gvLL~nlG~P~~~~~V~~fL~~~~~d~~vi~~p~~-~--~~~l~~~I~~~R~~k~~~~Y~~ig~gSPL~~~t~~q~ 81 (362)
T 1lbq_A 5 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAK-Y--QKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQA 81 (362)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSS-S--HHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHHhccCCccccCCHH-H--HHHHhhhcCccchHHHHHHHHHcCCCCccHHHHHHHH
Confidence 568999999999999999999999999999999999986 3 5799999999999999999999999999999999999
Q ss_pred HHHHHHHhccC---CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCce
Q 009474 199 EELRKSLWEKN---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQ 275 (534)
Q Consensus 199 ~~L~~~L~~~g---~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~ 275 (534)
++|+++|++.+ .+++|++|||||+|+|+|+|++|+++|+++|+++|||||||.+|+||+++++.+++++.+..+.++
T Consensus 82 ~~L~~~L~~~~~~~~~~~V~~amry~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~~~~i~~~l~~~~~~~~i~ 161 (362)
T 1lbq_A 82 TEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSIS 161 (362)
T ss_dssp HHHHHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSE
T ss_pred HHHHHHHHhhcccCCCceEEeecccCCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHHHHHHHHHHHhcccCCCce
Confidence 99999997643 578999999999999999999999999999999999999999999999999998887766567788
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCCC--CceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCC
Q 009474 276 HTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNA 353 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~--~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~ 353 (534)
+++|++|++||.||+|++++|++++++++.+ ++++|||||||+|++++ ++||||.+||++|+++|+++||.. ++
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~~~~~~~~~~~llfSaHglP~~~~-~~GDpY~~q~~~ta~ll~e~lg~~---~~ 237 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVV-NTGDAYPAEVAATVYNIMQKLKFK---NP 237 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHH-TTTCSHHHHHHHHHHHHHHHTTTC---SC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCeEEEEecCCCccccc-cCCCcHHHHHHHHHHHHHHHcCCC---CC
Confidence 8999999999999999999999999887543 55789999999999999 899999999999999999999864 25
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 009474 354 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 433 (534)
Q Consensus 354 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~f 433 (534)
|.++||||+|+.+||+|+|+|+|++| ++|+|+|+|+||||++||+|||||||+|++++|+++|. |.|+||||+||.|
T Consensus 238 ~~~~fQSr~G~~~WL~P~t~~~l~~L-~~G~k~vvVvP~gFvsD~lETL~eid~e~~e~~~~~G~--~~~~p~Ln~~p~f 314 (362)
T 1lbq_A 238 YRLVWQSQVGPKPWLGAQTAEIAEFL-GPKVDGLMFIPIAFTSDHIETLHEIDLGVIGESEYKDK--FKRCESLNGNQTF 314 (362)
T ss_dssp EEEEEECCCSSSCBCSCBHHHHHHHH-GGGCSCEEEECTTCSSCCHHHHTCCCCCCCTTCTTGGG--EEECCCCTTCHHH
T ss_pred EEEEEECCCCCcccCCCCHHHHHHHH-HcCCCeEEEECCeechhhHhhHHHHHHHHHHHHHhCCC--EEEcCCCCCCHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999994 9999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 009474 434 ISDLADAVIESLPY 447 (534)
Q Consensus 434 I~~Lad~V~e~L~~ 447 (534)
|++|+++|.+++.+
T Consensus 315 i~~L~~lv~~~l~~ 328 (362)
T 1lbq_A 315 IEGMADLVKSHLQS 328 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998864
No 3
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=100.00 E-value=1e-78 Score=623.92 Aligned_cols=302 Identities=28% Similarity=0.468 Sum_probs=279.5
Q ss_pred CCCcEEEEEEccCCCCChhhHHHHHHhhcCCCCcccCCchhhhhhhhHHHHhhhccchhhHHhhhhcCCCCchHHHHHHH
Q 009474 118 GDEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQ 197 (534)
Q Consensus 118 ~~~K~aVLLvnlGtP~s~~dV~~fL~~~l~D~~VI~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 197 (534)
+++|+||||||||||++++||++||+|+|+|+.+ | ++|+++++++|+.|||||||+.+|++|
T Consensus 2 ~~~~~~vLl~n~G~P~~~~~v~~fL~~~~~~~~~---~---------------~~r~~~~~~~Y~~ig~gSPl~~~t~~q 63 (310)
T 2h1v_A 2 SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKP---E---------------PEMLQDLKDRYEAIGGISPLAQITEQQ 63 (310)
T ss_dssp CCEEEEEEEEECCCCSSGGGHHHHHHHHTTTCCC---C---------------HHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCChHHHHHHHHHHhcCCCC---C---------------hHHHHHHHHHHHHCCCCChhHHHHHHH
Confidence 3568999999999999999999999999999632 2 236889999999999999999999999
Q ss_pred HHHHHHHHhccCC--CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCce
Q 009474 198 AEELRKSLWEKNL--PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQ 275 (534)
Q Consensus 198 a~~L~~~L~~~g~--~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~ 275 (534)
+++|+++|++++. +++|++|||||+|+|+|+|++|+++|+++|+++|||||||.+|+|++++++.+++++.. .++
T Consensus 64 ~~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~~~---~~~ 140 (310)
T 2h1v_A 64 AHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLG---GLT 140 (310)
T ss_dssp HHHHHHHHHHHCSSEEEEEEEEESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHHHC---SCE
T ss_pred HHHHHHHHHhcCCCCCceEeehhcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHhCC---CCe
Confidence 9999999987653 79999999999999999999999999999999999999999999999999988886543 467
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCC--CCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCC
Q 009474 276 HTVIPSWYQREGYITAMANLIEKELQNFDS--PEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNA 353 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~--~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~ 353 (534)
++++++|++||.||+|++++|++++++++. +++.+|||||||+|++++ ++||||.+||++|+++|++++|.. +
T Consensus 141 i~~i~~~~~~p~~i~a~a~~i~~~l~~~~~~~~~~~~llfs~HG~P~~~~-~~gDpY~~~~~~t~~~l~e~l~~~----~ 215 (310)
T 2h1v_A 141 ITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIK-EFGDPYPDQLHESAKLIAEGAGVS----E 215 (310)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHHHHSCHHHHTSEEEEEEEECCBGGGG-GGTCCHHHHHHHHHHHHHHHHTCS----C
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhcccccCCCceEEEecCCCchhhc-cCCCChHHHHHHHHHHHHHHcCCC----C
Confidence 999999999999999999999999987753 245689999999999999 899999999999999999999852 5
Q ss_pred EEEEEecC-cCCCCCCCCcHHHHHHHhhhc-CCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCH
Q 009474 354 YTLAYQSR-VGPVEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA 431 (534)
Q Consensus 354 ~~lafQSr-~G~~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp 431 (534)
|.++|||+ +|+++||+|+|+|+|++|+++ |+|+|+|+|+||++||+|||+|||+|+++.|+++|. .|.|+||||+||
T Consensus 216 ~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k~v~V~P~~F~sD~lEtl~ei~~e~~e~~~~~G~-~~~~~p~ln~~p 294 (310)
T 2h1v_A 216 YAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGA-SYYRPEMPNAKP 294 (310)
T ss_dssp EEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCSEEEEECTTCCSSCHHHHTTTTTHHHHHHHHHTC-EEECCCCCTTCH
T ss_pred EEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCceEEEECCcccccceeeHHHHHHHHHHHHHHcCC-eEEECCCCCCCH
Confidence 99999997 999999999999999999999 999999999999999999999999999999999995 599999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 009474 432 TFISDLADAVIESLP 446 (534)
Q Consensus 432 ~fI~~Lad~V~e~L~ 446 (534)
.|+++|+++|.+++.
T Consensus 295 ~~i~~l~~~v~~~l~ 309 (310)
T 2h1v_A 295 EFIDALATVVLKKLG 309 (310)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 4
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=100.00 E-value=2e-33 Score=280.86 Aligned_cols=208 Identities=18% Similarity=0.165 Sum_probs=169.1
Q ss_pred CceEEEeeec------------CCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH---HHhccccCCce
Q 009474 211 PAKVYVGMRY------------WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI---FREDEYLVNMQ 275 (534)
Q Consensus 211 ~v~V~~AMRY------------~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~---~~~~~~~~~i~ 275 (534)
+++|++||.+ ++|+++++|++|+++|+++|+|+|||| ++|+.++++.+. +++.+. .-.+
T Consensus 41 ~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l-----~~G~~~~di~~~~~~l~~~~~-~~~~ 114 (269)
T 2xvy_A 41 DIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHT-----IPGEEFHGLLETAHAFQGLPK-GLTR 114 (269)
T ss_dssp TSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCS-----SSSHHHHHHHHHHHHHTTCTT-SCSE
T ss_pred CCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEecee-----eccHhHHHHHHHHHHHHHhhc-cCCe
Confidence 5678888876 889999999999999999999999997 356788888777 443321 1257
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEE
Q 009474 276 HTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYT 355 (534)
Q Consensus 276 i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~ 355 (534)
++++++|++||.|+++++++|++++.... +++..|||++||+|. .||++.. ++++++.+ ++ .
T Consensus 115 i~~~~pl~~~p~~i~~la~~i~~~~~~~~-~~~~~lll~~HGs~~-----~~~~~~~---~~a~~l~~-~~--------~ 176 (269)
T 2xvy_A 115 VSVGLPLIGTTADAEAVAEALVASLPADR-KPGEPVVFMGHGTPH-----PADICYP---GLQYYLWR-LD--------P 176 (269)
T ss_dssp EEEECCSSCSHHHHHHHHHHHHHHSCTTC-CTTCCEEEEECCCSS-----GGGGHHH---HHHHHHHT-TC--------T
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhchhhc-cCCceEEEEECCCCh-----hhccHHH---HHHHHHHh-cC--------C
Confidence 89999999999999999999999986422 123469999999996 2354443 35555533 33 1
Q ss_pred EEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccch-hhhh--hhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHH
Q 009474 356 LAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVS-EHIE--TLEEIDVEYKELALKSGIEKWGRVPALGCEAT 432 (534)
Q Consensus 356 lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlE--TL~EIdiE~rela~e~G~~~~~rvp~LNdsp~ 432 (534)
.+| +|..+| +|++++++++|.++|+|+|+|+|++|++ ||+| +.+|++.++++.+.+.|++.+.++||||++|.
T Consensus 177 ~~~---~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~~G~h~~~di~~~~~~~~~~~~~~~g~~~~~~~~~Lg~~p~ 252 (269)
T 2xvy_A 177 DLL---VGTVEG-SPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEAKPVLHGTAESDA 252 (269)
T ss_dssp TEE---EEESSS-SSCHHHHHHHHHHHTCSEEEEEEESSSCCHHHHTTTTCSSTTSHHHHHHHTTCEEEECCCCGGGCHH
T ss_pred CEE---EEEcCC-CCCHHHHHHHHHHCCCCEEEEECCccccccchhhhcCCCchhHHHHHHHHcCcEEEEecCCCCCCHH
Confidence 244 456778 8999999999999999999999999885 9999 77888899999999999998889999999999
Q ss_pred HHHHHHHHHHHhCC
Q 009474 433 FISDLADAVIESLP 446 (534)
Q Consensus 433 fI~~Lad~V~e~L~ 446 (534)
|+++|++++.+.+.
T Consensus 253 ~~~~l~~~~~~a~~ 266 (269)
T 2xvy_A 253 VAAIWLRHLDDALA 266 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 5
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.95 E-value=1.2e-28 Score=265.60 Aligned_cols=239 Identities=13% Similarity=0.097 Sum_probs=195.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhccCC-----CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHH
Q 009474 184 IGGGSPLRRITDAQAEELRKSLWEKNL-----PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 258 (534)
Q Consensus 184 IgggSPL~~~T~~qa~~L~~~L~~~g~-----~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~ 258 (534)
+|-|||+...++++.++|++.|++.+. .+.|++||..++|+++++|++| |+++|+|+|||++++. ++.
T Consensus 9 VgHGSp~~~~a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle~~PsI~eaL~~L---G~~rVvVvPLfl~~G~----H~~ 81 (474)
T 2jh3_A 9 IGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTV---AYSDVTVVPVFLSEGY----VTE 81 (474)
T ss_dssp EECCCSSCTHHHHHHHHHHHHHHHHHHTTCCSCSEEEEEESSSSSBTTTGGGGC---CBSEEEEEECCSCCSH----HHH
T ss_pred EeCCCCCChhHHHHHHHHHHHHHHhCCccccCCCeEEEEEcCCCCCHHHHHHHc---CcCeEEEEEEehhccH----hHH
Confidence 377899988999999999999987654 6789999988999999999999 9999999999987654 344
Q ss_pred HHHHHHHHhcc-----------ccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCC
Q 009474 259 RLLESIFREDE-----------YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAG 327 (534)
Q Consensus 259 ~~l~e~~~~~~-----------~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~G 327 (534)
+++.+.+.... .++.+.++++++|++||.|+++++++|+++++.-..+++..|||++
T Consensus 82 ~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~~~~pLG~~P~lie~la~rI~eal~~g~~~~~~avvlvg------------ 149 (474)
T 2jh3_A 82 TVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLA------------ 149 (474)
T ss_dssp THHHHHHTCCCCSCCCTTCEEEEETTEEEEECCCGGGSTTHHHHHHHHHHHHSCTTCCGGGCEEEEEE------------
T ss_pred HHHHHHHHHhhhccccchhhhhhcCCceEEEeCccCCCHHHHHHHHHHHHHHHhhccCcccceEEEec------------
Confidence 45655554321 2345678999999999999999999999988651123455678766
Q ss_pred Cc-hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCC-----CCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhh
Q 009474 328 DP-YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP-----VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIET 401 (534)
Q Consensus 328 Dp-Y~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~-----~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlET 401 (534)
|| |..+|+++++++++++|.. +|.++|||+ +| .+||+|++++++++| |+|+|+|+|+ |++||+||
T Consensus 150 dp~a~~~~~~la~~L~e~lg~~----~v~vaf~s~-~Pwl~P~~~wleP~l~d~l~~L---G~krVvV~P~-Fl~dG~h~ 220 (474)
T 2jh3_A 150 ARPGNAALETHAQALRERGQFA----GVEVVLESR-EALTPESHAASAVPLSEWPSRV---EAGQAVLVPF-LTHLGKHA 220 (474)
T ss_dssp SSTTCHHHHHHHHHHHHHCCSS----EEEEEECCC-C---------CCEEGGGGGGGC---CSSCEEEEEC-SSCCCHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCC----cEEEEEEeC-CCCCCcccccccCCHHHHHHHc---CCCeEEEEEe-eccCCcch
Confidence 34 6789999999999999754 499999998 54 468888999999998 8999999998 99999999
Q ss_pred hHhHHHHHHHHHHH--cCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCCCcc
Q 009474 402 LEEIDVEYKELALK--SGIEKWGRVPALGCEATFISDLADAVIESLPYVGAM 451 (534)
Q Consensus 402 L~EIdiE~rela~e--~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~~~~~ 451 (534)
++||+.+.++...+ .|. .+.++++||++|.|++++++++.+++.+....
T Consensus 221 ~~DI~~~~~~~~~~~p~G~-~v~~~~~LG~~p~~~~ll~~rv~eal~~~~~~ 271 (474)
T 2jh3_A 221 AERLQQALAQAAERFPQAP-PLHVGGPVGEHPAVAEVVLALAAEGREDERGG 271 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCC-CEEECCCGGGSTTHHHHHHHHHHTTCSCSCCB
T ss_pred HHHHHHHHHHHHHhccCCc-EEEecCCCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999998766655 355 58999999999999999999999998765543
No 6
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.94 E-value=3.6e-26 Score=228.77 Aligned_cols=228 Identities=14% Similarity=0.182 Sum_probs=177.1
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEee-----------ecC--CCCHHHHHHHHHHcCCCEEEEEecCCcccccc
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-----------RYW--HPFTEEAIEQIKRDGITKLVVLPLYPQFSIST 253 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM-----------RY~--~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~T 253 (534)
||-..+..++..+++.+.+++...+++|++|| ||+ .|+++++|++|+++|+++|+|+|||+ +
T Consensus 11 GSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~Pl~l-----~ 85 (264)
T 2xwp_A 11 GTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLHI-----I 85 (264)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEEECCS-----S
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEEeCcc-----c
Confidence 45444433324444555554444578999999 444 59999999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHhccc-cCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHH
Q 009474 254 SGSSLRLLESIFREDEY-LVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKA 332 (534)
Q Consensus 254 tGs~~~~l~e~~~~~~~-~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~ 332 (534)
.|+.++++.+.+++.+. ++ ++++.++++.+|.+++++++.|.+.+... +++..|||++||.|.+ |++|..
T Consensus 86 ~G~~~~di~~~v~~~~~~~~--~i~~~~pl~~~~~~~~~l~~~l~~~~~~~--~~~~~lvl~gHGs~~~-----~~~~~~ 156 (264)
T 2xwp_A 86 NGDEYEKIVREVQLLRPLFT--RLTLGVPLLSSHNDYVQLMQALRQQMPSL--RQTEKVVFMGHGASHH-----AFAAYA 156 (264)
T ss_dssp SSHHHHHHHHHHHHHGGGCS--EEEEECCSSCSHHHHHHHHHHHHTTSCCC--CTTEEEEEEECCCSSG-----GGHHHH
T ss_pred CcHHHHHHHHHHHHHHhhCC--ceEEecCCCCCHHHHHHHHHHHHHhcccc--CCCCeEEEEECCCCch-----hhHHHH
Confidence 77888888776665543 34 57889999999999999999998776543 2445899999999865 244432
Q ss_pred HHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccch-hhhhhhHhHHHH---
Q 009474 333 EMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVS-EHIETLEEIDVE--- 408 (534)
Q Consensus 333 q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EIdiE--- 408 (534)
++++.+ ++++. ++ ++|..+| +|++++++++|.++|+|+|+|+|++|++ ||+ .+||..+
T Consensus 157 ---~~a~~l-~~~~~-----~v------~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~aG~h~--~~Di~~~~~d 218 (264)
T 2xwp_A 157 ---CLDHMM-TAQRF-----PA------RVGAVES-YPEVDILIDSLRDEGVTGVHLMPLMLVAGDHA--INDMASDDGD 218 (264)
T ss_dssp ---HHHHHH-HHTTC-----SE------EEEESSS-SSCHHHHHHHHHHHTCCEEEEEECSSCCCHHH--HHHHHSSSTT
T ss_pred ---HHHHHH-HhhCC-----CE------EEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeeecccCcch--hhhccccchh
Confidence 333333 33331 23 4555778 9999999999999999999999999999 999 7788876
Q ss_pred -HHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 009474 409 -YKELALKSGIEKWGRVPALGCEATFISDLADAVIESLP 446 (534)
Q Consensus 409 -~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~ 446 (534)
.++.+.+.|++...++++||++|.+++.+++++.+.+.
T Consensus 219 ~~~~~~~~~g~~~~~~~~~LG~~p~i~~~~~~r~~ea~~ 257 (264)
T 2xwp_A 219 SWKMRFNAAGIPATPWLSGLGENPAIRAMFVAHLHQALN 257 (264)
T ss_dssp SHHHHHHHTTCCEEECCCCGGGCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 68888899998777899999999999999999999875
No 7
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=99.04 E-value=3.1e-09 Score=94.31 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=88.6
Q ss_pred eEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEE
Q 009474 309 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 388 (534)
Q Consensus 309 ~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 388 (534)
..||+.+||..... ....+++.++.+.++. .++.++|- ++-.|++++++++|.++|+++|+
T Consensus 6 ~alllv~HGS~~~~-------~~~~~~~l~~~l~~~~------~~V~~a~l------e~~~P~l~~~l~~l~~~G~~~vv 66 (126)
T 3lyh_A 6 HQIILLAHGSSDAR-------WCETFEKLAEPTVESI------ENAAIAYM------ELAEPSLDTIVNRAKGQGVEQFT 66 (126)
T ss_dssp EEEEEEECCCSCHH-------HHHHHHHHHHHHHHHS------TTCEEEES------SSSSSBHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEeCCCCCHH-------HHHHHHHHHHHHHhhc------CCEEEEEE------eCCCCCHHHHHHHHHHcCCCEEE
Confidence 47999999985321 2344555566666654 14778874 35579999999999999999999
Q ss_pred EEccccch-hhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 009474 389 AVPISFVS-EHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLP 446 (534)
Q Consensus 389 VvPigFvs-DhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~ 446 (534)
|+|+.++. +|. .+||..+..+...+.|. .+.+.+.||++|.++++|++++.+++.
T Consensus 67 vvPlfl~~G~H~--~~Dip~~~~~~~~~~~~-~i~~~~~LG~~p~l~~~l~~ri~~al~ 122 (126)
T 3lyh_A 67 VVPLFLAAGRHL--RKDVPAMIERLEAEHGV-TIRLAEPIGKNPRLGLAIRDVVKEELE 122 (126)
T ss_dssp EEECCSCCCHHH--HHHHHHHHHHHHHHHTC-EEEECCCGGGSHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCchh--hhHHHHHHHHHHHHhCc-eEEEcCCCCCChHHHHHHHHHHHHHHh
Confidence 99987555 666 67877777665555565 488999999999999999999998764
No 8
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=98.88 E-value=1.1e-08 Score=90.79 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=80.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~A-MRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e 263 (534)
|=||+-... .+..+++.+.|+++. ..|+.| |.++.|++++++++|+++|+++|+|+|+|.... .++.+++.+
T Consensus 12 ~HGS~~~~~-~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G----~H~~~Dip~ 84 (126)
T 3lyh_A 12 AHGSSDARW-CETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAG----RHLRKDVPA 84 (126)
T ss_dssp ECCCSCHHH-HHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCC----HHHHHHHHH
T ss_pred eCCCCCHHH-HHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHHHHcCCCEEEEEecccCCC----chhhhHHHH
Confidence 445654332 234555666665544 367888 578999999999999999999999999997543 455566655
Q ss_pred HHHhcc-ccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 009474 264 IFREDE-YLVNMQHTVIPSWYQREGYITAMANLIEKELQN 302 (534)
Q Consensus 264 ~~~~~~-~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~ 302 (534)
..++.+ .+ .+++++.++++.||.++++++++|++++..
T Consensus 85 ~~~~~~~~~-~~~i~~~~~LG~~p~l~~~l~~ri~~al~~ 123 (126)
T 3lyh_A 85 MIERLEAEH-GVTIRLAEPIGKNPRLGLAIRDVVKEELER 123 (126)
T ss_dssp HHHHHHHHH-TCEEEECCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CceEEEcCCCCCChHHHHHHHHHHHHHHhc
Confidence 443322 12 567888999999999999999999999864
No 9
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=98.82 E-value=7.6e-09 Score=95.66 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEe-eec-CCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhcc--
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVG-MRY-WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE-- 269 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~A-MRY-~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~-- 269 (534)
.+++++.|++++ ....|++| |.| +.|++++++++| |+++|+|+|||+++.. +..+++.+.+.+..
T Consensus 43 ~~~la~~l~~~~----~~~~V~~afle~~~~Psl~~~l~~l---G~~~VvVvPlfL~~G~----h~~~DIp~~l~~~~~~ 111 (156)
T 1tjn_A 43 MELHRKRIEESG----AFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGL----HVTEDLPDLLGFPRGR 111 (156)
T ss_dssp HHHHHHHHHHHT----SSSEEEEEECSSSCSSCHHHHHHHC---CCSEEEEEECCSSCSH----HHHTHHHHHHTCCCSS
T ss_pred HHHHHHHHHhhC----CCCeEEEEEecCCCCCCHHHHHHHc---CCCEEEEEechhcCCc----hhHhHHHHHHHHHHhc
Confidence 344445554443 34689998 688 999999999999 9999999999987654 34455655543321
Q ss_pred -----ccCCceEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 009474 270 -----YLVNMQHTVIPSWYQREGYITAMANLIEKELQN 302 (534)
Q Consensus 270 -----~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~~ 302 (534)
..+.+++++.++++++|.++++++++|+++++.
T Consensus 112 ~sw~~~~~~~~i~~~~pLG~~p~l~~~l~~ri~ea~~~ 149 (156)
T 1tjn_A 112 GIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFRIGRD 149 (156)
T ss_dssp SCEEEEETTEEEEECCCSTTCHHHHHHHHHHHHCCC--
T ss_pred ccccccCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 245677889999999999999999999887654
No 10
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=98.82 E-value=1.7e-08 Score=89.82 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=83.5
Q ss_pred eEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEE
Q 009474 309 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 388 (534)
Q Consensus 309 ~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 388 (534)
..||+.+||..... ....+.+.++.+.++++. .++.++|-+. |-.|+++++|++| |+++|+
T Consensus 4 ~alllv~HGS~~~~-------~~~~~~~la~~l~~~~~~----~~V~~a~le~-----~~~Psl~~~l~~l---g~~~v~ 64 (133)
T 2xws_A 4 RGLVIVGHGSQLNH-------YREVMELHRKRIEESGAF----DEVKIAFAAR-----KRRPMPDEAIREM---NCDIIY 64 (133)
T ss_dssp EEEEEEECSCCCHH-------HHHHHHHHHHHHHHHTSS----SEEEEEESST-----TCSSCHHHHHHHC---CCSEEE
T ss_pred ceEEEEECCCCCHH-------HHHHHHHHHHHHHhhCCC----CcEEeeeeec-----CCCCCHHHHHHHc---CCCEEE
Confidence 46999999985321 233455666677776542 2478888662 3479999999999 999999
Q ss_pred EEccccchhhhhhhHhHHHHHHHHHH------HcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 009474 389 AVPISFVSEHIETLEEIDVEYKELAL------KSGIEKWGRVPALGCEATFISDLADAVIESLP 446 (534)
Q Consensus 389 VvPigFvsDhlETL~EIdiE~rela~------e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~ 446 (534)
|+|+.++. -.++..||..+..+..+ +.....+.+.+.|+++|.+++++++++.+.+.
T Consensus 65 v~Plfl~~-G~h~~~di~~~~~~~~~~~s~~~~~~~~~i~~~~pLg~~p~~~~~l~~ri~~a~~ 127 (133)
T 2xws_A 65 VVPLFISY-GLHVTEDLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFRIGR 127 (133)
T ss_dssp EEECCSSC-CHHHHTHHHHHHTCCCSSSCEEEEETTEEEEECCCSTTSHHHHHHHHHHHHCCC-
T ss_pred EEeeeeCC-CcchHhHHHHHHHHhhccccccccCCCceEEEcCCCCCCHHHHHHHHHHHHHhhc
Confidence 99985444 33346677655543222 23334678999999999999999999987664
No 11
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=98.79 E-value=2e-08 Score=89.34 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEe-eec-CCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVG-MRY-WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 262 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~A-MRY-~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~ 262 (534)
|=||.-.. ..+..+++.+.|+++.....|++| |.| +.|++++++++| |+++|+|+|+|+++.. +..+++.
T Consensus 10 ~HGS~~~~-~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~l~~l---g~~~v~v~Plfl~~G~----h~~~di~ 81 (133)
T 2xws_A 10 GHGSQLNH-YREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGL----HVTEDLP 81 (133)
T ss_dssp ECSCCCHH-HHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHHHHHC---CCSEEEEEECCSSCCH----HHHTHHH
T ss_pred ECCCCCHH-HHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHHHHHc---CCCEEEEEeeeeCCCc----chHhHHH
Confidence 44554332 222344455555554445689999 688 999999999999 9999999999976543 3445665
Q ss_pred HHHHhcc-------ccCCceEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 009474 263 SIFREDE-------YLVNMQHTVIPSWYQREGYITAMANLIEKELQ 301 (534)
Q Consensus 263 e~~~~~~-------~~~~i~i~~I~~~~d~p~yI~Ala~~I~~~l~ 301 (534)
+.+.... .++.+++++.+++++||.++++++++|+++++
T Consensus 82 ~~~~~~~~~~s~~~~~~~~~i~~~~pLg~~p~~~~~l~~ri~~a~~ 127 (133)
T 2xws_A 82 DLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFRIGR 127 (133)
T ss_dssp HHHTCCCSSSCEEEEETTEEEEECCCSTTSHHHHHHHHHHHHCCC-
T ss_pred HHHHHhhccccccccCCCceEEEcCCCCCCHHHHHHHHHHHHHhhc
Confidence 5554322 24556788999999999999999999987764
No 12
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=98.61 E-value=1.8e-07 Score=86.35 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=84.9
Q ss_pred eEEEEeeCCcchhhhccCCCc-hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceE
Q 009474 309 VMIFFSAHGVPLAYVEEAGDP-YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSL 387 (534)
Q Consensus 309 ~~LLFSaHGlP~~~ie~~GDp-Y~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~V 387 (534)
..||+.+||.. || ....+++.++.+.++++. .++.++|-...+ .|+++++|++| |+++|
T Consensus 25 ~avlLv~HGS~--------~p~~~~~~~~la~~l~~~~~~----~~V~~afle~~~-----~Psl~~~l~~l---G~~~V 84 (156)
T 1tjn_A 25 RGLVIVGHGSQ--------LNHYREVMELHRKRIEESGAF----DEVKIAFAARKR-----RPMPDEAIREM---NCDII 84 (156)
T ss_dssp EEEEEEECCTT--------STTHHHHHHHHHHHHHHHTSS----SEEEEEECSSSC-----SSCHHHHHHHC---CCSEE
T ss_pred cCEEEEECCCC--------CHHHHHHHHHHHHHHHhhCCC----CeEEEEEecCCC-----CCCHHHHHHHc---CCCEE
Confidence 57999999984 33 344566677777777642 247888865312 69999999999 99999
Q ss_pred EEEccccch-hhhhhhHhHHHHHHHHHH------HcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 388 LAVPISFVS-EHIETLEEIDVEYKELAL------KSGIEKWGRVPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 388 vVvPigFvs-DhlETL~EIdiE~rela~------e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
+|+|+.++. +|. ..||..+..+..+ +.....+.+.+.|+++|.+++++++++.+.+..
T Consensus 85 vVvPlfL~~G~h~--~~DIp~~l~~~~~~~sw~~~~~~~~i~~~~pLG~~p~l~~~l~~ri~ea~~~ 149 (156)
T 1tjn_A 85 YVVPLFISYGLHV--TEDLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFRIGRD 149 (156)
T ss_dssp EEEECCSSCSHHH--HTHHHHHHTCCCSSSCEEEEETTEEEEECCCSTTCHHHHHHHHHHHHCCC--
T ss_pred EEEechhcCCchh--HhHHHHHHHHHHhcccccccCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999987555 776 5676555543222 233346789999999999999999999987643
No 13
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=98.25 E-value=9.5e-06 Score=80.42 Aligned_cols=127 Identities=13% Similarity=0.177 Sum_probs=90.1
Q ss_pred ceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCc-----CCCCCCCCcHHHHHHHhhhc
Q 009474 308 QVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRV-----GPVEWLKPYTDETIIKLGQK 382 (534)
Q Consensus 308 ~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~-----G~~~WL~P~t~d~L~~L~~~ 382 (534)
+..||+.+||.-.. .-.+.+++.++.+.++++ + .++..+|-|+. ....|-.|++.++|++|.++
T Consensus 9 ~~aillv~hGS~~~-------~~~~~~~~~~~~l~~~~~--~--~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~ 77 (269)
T 2xvy_A 9 KTGILLVAFGTSVE-------EARPALDKMGDRVRAAHP--D--IPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEE 77 (269)
T ss_dssp CEEEEEEECCCCCT-------TTTHHHHHHHHHHHHHCT--T--SCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred CceEEEEeCCCCcH-------HHHHHHHHHHHHHHHHCC--C--CeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHC
Confidence 45799999998311 133466667777777763 2 25889997721 00125689999999999999
Q ss_pred CCceEEEEccccchhhhhhhHhHHHHHHHHHH-HcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 383 GVKSLLAVPISFVSEHIETLEEIDVEYKELAL-KSGIEKWGRVPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 383 G~k~VvVvPigFvsDhlETL~EIdiE~rela~-e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
|+++|+|+|....+-+ +..||.....++.+ ..++..+..++.+++||.+++++++++.+.+..
T Consensus 78 G~~~ivV~Pl~l~~G~--~~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~la~~i~~~~~~ 141 (269)
T 2xvy_A 78 GFTHVAVQSLHTIPGE--EFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALVASLPA 141 (269)
T ss_dssp TCCEEEEEECCSSSSH--HHHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHHHHHHHHHSCT
T ss_pred CCCEEEEEeceeeccH--hHHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHHHHHHHHhchh
Confidence 9999999998866554 34555444222221 123356899999999999999999999998854
No 14
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=97.92 E-value=7.4e-05 Score=76.26 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=60.2
Q ss_pred CCcHHHHHHHhhhcCCceEEEEccc-----cchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Q 009474 369 KPYTDETIIKLGQKGVKSLLAVPIS-----FVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIE 443 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVvPig-----FvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e 443 (534)
.|+++|+|++|.++|+++|+|+|.. +++-+. ..++....+ +.+...+..++.+++||.||+++++.|.+
T Consensus 90 ~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~--~~~i~~~l~----~~~~~~i~~i~~~~~~p~~i~a~a~~i~~ 163 (310)
T 2h1v_A 90 EPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSY--NKRAKEEAE----KLGGLTITSVESWYDEPKFVTYWVDRVKE 163 (310)
T ss_dssp SSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHH--HHHHHHHHH----HHCSCEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHH--HHHHHHHHH----hCCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999987 455554 566544433 33345699999999999999999999998
Q ss_pred hCCCC
Q 009474 444 SLPYV 448 (534)
Q Consensus 444 ~L~~~ 448 (534)
++...
T Consensus 164 ~l~~~ 168 (310)
T 2h1v_A 164 TYASM 168 (310)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 77543
No 15
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=97.90 E-value=5.6e-05 Score=75.13 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=85.5
Q ss_pred EEEEeeCCcchhhhccCCCc-hHH-HHHHHHHHHHHHhccccCCCCEEEEEecCcCCCC------CCCCcHHHHHHHhhh
Q 009474 310 MIFFSAHGVPLAYVEEAGDP-YKA-EMEECVDLIMEELEKRKITNAYTLAYQSRVGPVE------WLKPYTDETIIKLGQ 381 (534)
Q Consensus 310 ~LLFSaHGlP~~~ie~~GDp-Y~~-q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~------WL~P~t~d~L~~L~~ 381 (534)
.||+.+||. + || -.. .++..++.+.+++. + .+++.+|-|+.=..+ ...|++.++|++|.+
T Consensus 4 aillv~hGS--r------~~~~~~~~~~~~~~~v~~~~p--~--~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~ 71 (264)
T 2xwp_A 4 ALLVVSFGT--S------YHDTCEKNIVACERDLAASCP--D--RDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAA 71 (264)
T ss_dssp EEEEEECCC--S------CHHHHHHHHHHHHHHHHHHCT--T--SEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_pred eEEEEECCC--C------CHHHHHHHHHHHHHHHHHHCC--C--CeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHh
Confidence 689999998 2 22 222 55556666666652 2 358899976311111 146999999999999
Q ss_pred cCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 382 KGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 382 ~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
+|+++|+|+|...+..+ |. .||..+.++... ++..+.+.+.|+.+|..++.+++.+.+.+..
T Consensus 72 ~G~~~vvV~Pl~l~~G~-~~-~di~~~v~~~~~--~~~~i~~~~pl~~~~~~~~~l~~~l~~~~~~ 133 (264)
T 2xwp_A 72 QGYQDVAIQSLHIINGD-EY-EKIVREVQLLRP--LFTRLTLGVPLLSSHNDYVQLMQALRQQMPS 133 (264)
T ss_dssp HTCCEEEEEECCSSSSH-HH-HHHHHHHHHHGG--GCSEEEEECCSSCSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEEEeCcccCcH-HH-HHHHHHHHHHHh--hCCceEEecCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999998766532 32 466555444432 2336788899999999999999999988764
No 16
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=97.88 E-value=1.1e-05 Score=87.19 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=82.6
Q ss_pred eEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccC-CCCEEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceE
Q 009474 309 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKI-TNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSL 387 (534)
Q Consensus 309 ~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~-~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~V 387 (534)
..||+.+||.|.... -..++++.++.+.++.+...+ ..++.++|-+ ..|+++++|++| |+++|
T Consensus 4 ~alLLVgHGSp~~~~------a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle-------~~PsI~eaL~~L---G~~rV 67 (474)
T 2jh3_A 4 RSLVLIGHGSHHHGE------SARATQQVAEALRGRGLAGHLPYDEVLEGYWQ-------QEPGLRQVLRTV---AYSDV 67 (474)
T ss_dssp CEEEEEECCCSSCTH------HHHHHHHHHHHHHHHHHTTCCSCSEEEEEESS-------SSSBTTTGGGGC---CBSEE
T ss_pred ceEEEEeCCCCCChh------HHHHHHHHHHHHHHhCCccccCCCeEEEEEcC-------CCCCHHHHHHHc---CcCeE
Confidence 369999999984321 234455555555554320000 1246788865 279999999999 99999
Q ss_pred EEEccccch-hhhhhhHhHHHHHHHHH----------HHcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 009474 388 LAVPISFVS-EHIETLEEIDVEYKELA----------LKSGIEKWGRVPALGCEATFISDLADAVIESLPY 447 (534)
Q Consensus 388 vVvPigFvs-DhlETL~EIdiE~rela----------~e~G~~~~~rvp~LNdsp~fI~~Lad~V~e~L~~ 447 (534)
+|+|..++. .|. -.||..+..+.. ++.+...+.+++.|+++|.++++++++|.+.+..
T Consensus 68 vVvPLfl~~G~H~--~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~~~~pLG~~P~lie~la~rI~eal~~ 136 (474)
T 2jh3_A 68 TVVPVFLSEGYVT--ETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPE 136 (474)
T ss_dssp EEEECCSCCSHHH--HTHHHHHHTCCCCSCCCTTCEEEEETTEEEEECCCGGGSTTHHHHHHHHHHHHSCT
T ss_pred EEEEEehhccHhH--HHHHHHHHHHhhhccccchhhhhhcCCceEEEeCccCCCHHHHHHHHHHHHHHHhh
Confidence 999987544 666 456644443221 1234456899999999999999999999998865
No 17
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=97.71 E-value=0.00016 Score=75.57 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=61.2
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEccc--c---chhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 009474 368 LKPYTDETIIKLGQKGVKSLLAVPIS--F---VSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 442 (534)
Q Consensus 368 L~P~t~d~L~~L~~~G~k~VvVvPig--F---vsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~ 442 (534)
..|+++|+|++|.++|+++|+|+|.. | ++.|. ..|+....++.. ..+.-.+..++...+||.||+++++.|.
T Consensus 107 ~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~--~~~i~~~l~~~~-~~~~i~i~~i~~~~~~p~~I~ala~~I~ 183 (362)
T 1lbq_A 107 AKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSS--INELWRQIKALD-SERSISWSVIDRWPTNEGLIKAFSENIT 183 (362)
T ss_dssp SSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHH--HHHHHHHHHHHC-TTCCSEEEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHH--HHHHHHHHHhcc-cCCCceEEEecCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999999975 3 33455 667655555442 2233357899999999999999999999
Q ss_pred HhCCCC
Q 009474 443 ESLPYV 448 (534)
Q Consensus 443 e~L~~~ 448 (534)
+++...
T Consensus 184 ~~l~~~ 189 (362)
T 1lbq_A 184 KKLQEF 189 (362)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 887654
No 18
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.56 E-value=3.5e-05 Score=75.85 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=32.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 494 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 494 ~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
.+.+|++|||+||+||+..++.|++||+|+++++.
T Consensus 176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~ 210 (232)
T 2bhw_A 176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 210 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHH
T ss_pred HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 35689999999999999999999999999999874
No 19
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=97.45 E-value=6e-05 Score=74.44 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=33.3
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 492 GWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 492 g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
-+...+|+.|||+||+||+..++.|++||+|.++++.
T Consensus 191 ~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~ 227 (243)
T 3pl9_A 191 PILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWV 227 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3446799999999999999999999999999999874
No 20
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=97.28 E-value=0.0012 Score=68.82 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHH
Q 009474 185 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSS 257 (534)
Q Consensus 185 gggSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AM--RY~-----~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~ 257 (534)
..|.|-....++-+++|.++|.- +-++.+++ |.| .|+++++|++|.++|+++|+|+|.. |.+--..+
T Consensus 207 ~~GDpY~~q~~~t~~lv~e~Lg~---~~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~P~g--FvsD~lET- 280 (359)
T 3hcn_A 207 NRGDPYPQEVSATVQKVMERLEY---CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIA--FTSDHIET- 280 (359)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTT---CSCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEECTT--CCSCCCCC-
T ss_pred ccCCCHHHHHHHHHHHHHHHcCC---CCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc--cchhhHHh-
Confidence 35678777788888888888853 22344555 455 7999999999999999999999963 22221111
Q ss_pred HHHHH-HHHHhccccCCc-eEEEeCCCCCCHHHHHHHHHHHHHHHHhC
Q 009474 258 LRLLE-SIFREDEYLVNM-QHTVIPSWYQREGYITAMANLIEKELQNF 303 (534)
Q Consensus 258 ~~~l~-e~~~~~~~~~~i-~i~~I~~~~d~p~yI~Ala~~I~~~l~~~ 303 (534)
+.++. +..++.....++ .++.++...++|.||+++++.|.+.++..
T Consensus 281 L~Eid~E~~~e~a~e~G~~~~~rip~LNd~p~fi~~La~lv~~~l~~~ 328 (359)
T 3hcn_A 281 LYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSN 328 (359)
T ss_dssp HHHHCHHHHHHHHHHTCCCEEEECCCSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCceEEEcCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 22331 111111011234 58899999999999999999999999763
No 21
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.27 E-value=3.5e-05 Score=77.29 Aligned_cols=38 Identities=34% Similarity=0.316 Sum_probs=34.4
Q ss_pred cCccchhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 491 WGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 491 ~g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+...+.+|++|||+||+||+..++.|++||+|+++++.
T Consensus 214 ~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 214 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44556899999999999999999999999999998875
No 22
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.19 E-value=6.1e-05 Score=75.83 Aligned_cols=37 Identities=35% Similarity=0.325 Sum_probs=30.7
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 492 GWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 492 g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
-....+|++|||+||+||+..++.|++||+|.++++.
T Consensus 222 ~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~ 258 (276)
T 2wsc_3 222 KDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 258 (276)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3446799999999999999999999999999998864
No 23
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=96.88 E-value=0.00018 Score=71.13 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=32.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHH-HHhCcchhhhhcc
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLE-VTTGEGFLHQWGI 529 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e-~~tg~~~~~~~g~ 529 (534)
.-+.+|++|||+||+||+..++.| ++||+|.+++++.
T Consensus 186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~ 223 (241)
T 2wsc_1 186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 223 (241)
T ss_dssp CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence 345799999999999999999999 5899999988763
No 24
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=96.60 E-value=0.00021 Score=71.02 Aligned_cols=37 Identities=41% Similarity=0.467 Sum_probs=33.2
Q ss_pred cccCccchhhhhhhhHHHHHHHHHHHHHHHhCcchhh
Q 009474 489 WEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 525 (534)
Q Consensus 489 ~~~g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~ 525 (534)
-.+.|...+|++|||+||+||+..++.|++++.|++.
T Consensus 86 e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 86 ENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp CCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 3567888999999999999999999999999988773
No 25
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=95.72 E-value=0.00024 Score=71.50 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=30.9
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHhCcchh
Q 009474 492 GWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFL 524 (534)
Q Consensus 492 g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~ 524 (534)
+|...+|++|||+||+||+..++.|++++.|++
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 788899999999999999999999999998876
No 26
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=95.38 E-value=0.0064 Score=60.03 Aligned_cols=31 Identities=42% Similarity=0.357 Sum_probs=26.9
Q ss_pred cCccchhhhhhhhHHHHHHHHHHHHHHHhCc
Q 009474 491 WGWTRSAETWNGRAAMLAVLVLLVLEVTTGE 521 (534)
Q Consensus 491 ~g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~ 521 (534)
+.+...+|+.|||+||+|++..++.|+.+|-
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 3455679999999999999999999998763
No 27
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=95.28 E-value=0.0044 Score=61.57 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=30.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhCcchhhhhc
Q 009474 495 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 528 (534)
Q Consensus 495 ~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~~~~g 528 (534)
+..|+-|||+ ||||+..++-|++||+|.++++.
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~ 233 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLL 233 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTT
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHH
Confidence 5699999999 99999999999999999998764
No 28
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=94.99 E-value=0.0076 Score=60.42 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=30.9
Q ss_pred ccCccchhhhhhhhHHHHHHHHHHHHHHHhCcchh
Q 009474 490 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFL 524 (534)
Q Consensus 490 ~~g~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~~~ 524 (534)
.+.+...+|+.|||+||+|++..++.|++++.|++
T Consensus 98 ~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 98 SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 35667789999999999999999999999987765
No 29
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=93.34 E-value=0.03 Score=55.00 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=25.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhCcc
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTTGEG 522 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~tg~~ 522 (534)
+...+|+.+||+||+|++..++.|+++..|
T Consensus 60 r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 60 KNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 345799999999999999999999976433
No 30
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=74.72 E-value=0.14 Score=50.52 Aligned_cols=27 Identities=37% Similarity=0.266 Sum_probs=23.2
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHh
Q 009474 493 WTRSAETWNGRAAMLAVLVLLVLEVTT 519 (534)
Q Consensus 493 ~~~~aE~~NGR~AM~G~~~~~~~e~~t 519 (534)
+...+|+.|||+||+|++..++.|+++
T Consensus 82 ~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 82 RYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp HSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred HHHHHHHhhchhHHhhhhcccchhhcc
Confidence 445799999999999999999888753
No 31
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=52.97 E-value=45 Score=33.03 Aligned_cols=139 Identities=13% Similarity=0.063 Sum_probs=76.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. ++. ..|- ++.+-|.+++.+.-+.+.+.+..-....+.-++|-
T Consensus 123 PHvWldp~~~~~~a~~I~~~L~~~dP-~~a----------~~y~-~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H 190 (294)
T 3hh8_A 123 PHAWLNLENGIIYSKNIAKQLIAKDP-KNK----------ETYE-KNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSE 190 (294)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHCG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEE
T ss_pred CceeCCHHHHHHHHHHHHHHHHHhCc-cch----------HHHH-HHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEEC
Confidence 46788899999999999999977642 210 0111 33455777777777777666531110002222322
Q ss_pred cCc---------------CCCCCCCCcHH---HHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SRV---------------GPVEWLKPYTD---ETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr~---------------G~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
..| |..+=.+|+.. +.++.+.+.|++-|++-| .|-...+ +.++++.|.+..
T Consensus 191 ~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~-~~~~~~~----------~~ia~~~g~~v~ 259 (294)
T 3hh8_A 191 GCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVES-SVDRRPM----------ETVSKDSGIPIY 259 (294)
T ss_dssp SCCHHHHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEET-TSCSHHH----------HHHHHHHCCCEE
T ss_pred ChHHHHHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-CCCcHHH----------HHHHHHhCCcEE
Confidence 221 11111246543 345556667887666644 4444433 345778898765
Q ss_pred --EEcCCCCC----CHHHHHHHHHHH
Q 009474 422 --GRVPALGC----EATFISDLADAV 441 (534)
Q Consensus 422 --~rvp~LNd----sp~fI~~Lad~V 441 (534)
.+.+.+++ ...++++|.+-+
T Consensus 260 ~~~~~~~l~~~~~~~~~Y~~~m~~n~ 285 (294)
T 3hh8_A 260 SEIFTDSIAKKGKPGDSYYAMMKWNL 285 (294)
T ss_dssp EEECSSSCCCTTSTTCSHHHHHHHHH
T ss_pred eeecCcccCCCCCCcccHHHHHHHHH
Confidence 45567762 235666655443
No 32
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=47.24 E-value=66 Score=30.67 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 191 RRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 191 ~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
...|++.++.+.+.|.+.|.++++.. -+....+.+..+++.+ +|.||+. +|.|-.+.++.....+++++.
T Consensus 42 ~s~n~~L~~~~~~~l~~~g~ev~~~d--L~~~~Dv~~~~~~l~~--aD~iv~~--~P~y~~~~p~~lK~~iD~v~~ 111 (218)
T 3rpe_A 42 GALNLTLTNVAADFLRESGHQVKITT--VDQGYDIESEIENYLW--ADTIIYQ--MPAWWMGEPWILKKYIDEVFT 111 (218)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEEEEE--GGGCCCHHHHHHHHHH--CSEEEEE--EECBTTBCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCEEEEEE--CCCccCHHHHHHHHHh--CCEEEEE--CChHhccCCHHHHHHHHHHHh
Confidence 46888899999999987776654433 3345677777777766 5666554 444556666666666666654
No 33
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=44.98 E-value=1.1e+02 Score=30.12 Aligned_cols=130 Identities=17% Similarity=0.208 Sum_probs=74.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. +.. ..|- ++.+-|.+++.+.-+.+.+.+.. ..++.-++|-
T Consensus 132 PH~Wldp~~~~~~a~~I~~~L~~~dP-~~a----------~~y~-~N~~~~~~~L~~Ld~~~~~~l~~--~~~~~~v~~H 197 (291)
T 1pq4_A 132 PHIWLSPTLVKRQATTIAKELAELDP-DNR----------DQYE-ANLAAFLAELERLNQELGQILQP--LPQRKFIVFH 197 (291)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHCG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHHHTT--CSCCEEEESS
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHCc-ccH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEEEC
Confidence 56888999999999999999987642 210 0111 34466888887777777766631 1112222221
Q ss_pred cC---------------cCCCCCCCCcHHH---HHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SR---------------VGPVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr---------------~G~~~WL~P~t~d---~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
.. .|.. .+|+..+ .++.+++.|++ ++++-..|-..-+|+| +++.|++..
T Consensus 198 ~af~Yf~~~yGl~~~~~~~~~--~eps~~~l~~l~~~ik~~~v~-~If~e~~~~~~~~~~i----------a~~~g~~v~ 264 (291)
T 1pq4_A 198 PSWAYFARDYNLVQIPIEVEG--QEPSAQELKQLIDTAKENNLT-MVFGETQFSTKSSEAI----------AAEIGAGVE 264 (291)
T ss_dssp CCCHHHHHHTTCEEEESCBTT--BCCCHHHHHHHHHHHHTTTCC-EEEEETTSCCHHHHHH----------HHHHTCEEE
T ss_pred CchHHHHHHCCCEEeecccCC--CCCCHHHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHH----------HHHcCCeEE
Confidence 11 1221 3565553 33445556775 4455556666666554 667888754
Q ss_pred EEcCCCCCCHHHHHHHHH
Q 009474 422 GRVPALGCEATFISDLAD 439 (534)
Q Consensus 422 ~rvp~LNdsp~fI~~Lad 439 (534)
.+..|+. .+++.|..
T Consensus 265 -~ld~l~~--~Y~~~m~~ 279 (291)
T 1pq4_A 265 -LLDPLAA--DWSSNLKA 279 (291)
T ss_dssp -EECTTCS--SHHHHHHH
T ss_pred -EEcCchh--hHHHHHHH
Confidence 4555554 45555543
No 34
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=38.99 E-value=33 Score=35.70 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=43.7
Q ss_pred CCCCCCcHHHHHHHhhhc-CCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHH
Q 009474 365 VEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEAT 432 (534)
Q Consensus 365 ~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~ 432 (534)
-.|.+|...+.|+++++. |++.|.+.+.-+.....-+..|+. +.++.++++|++ +.-+.+++-++.
T Consensus 25 ~rW~g~~d~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~-~lk~~l~~~GL~-i~~i~s~~~~~~ 91 (386)
T 3bdk_A 25 FRWYGKKDPVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENIL-ELKKMVEEAGLE-ITVIESIPVHED 91 (386)
T ss_dssp CBCCCTTCSSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHH-HHHHHHHTTTCE-EEEEECCCCCHH
T ss_pred EEecCCCCHHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHH-HHHHHHHHcCCE-EEEEeccccccc
Confidence 458888777799999999 999999875322211111223332 468888899996 666666666643
No 35
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.69 E-value=19 Score=31.29 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=29.3
Q ss_pred cHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 371 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 371 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
.+.++++++.+.|+|. +++-.||.. .|..+.|+++|+.
T Consensus 70 ~v~~~v~e~~~~g~k~-v~~~~G~~~----------~e~~~~a~~~Gir 107 (122)
T 3ff4_A 70 NQLSEYNYILSLKPKR-VIFNPGTEN----------EELEEILSENGIE 107 (122)
T ss_dssp HHGGGHHHHHHHCCSE-EEECTTCCC----------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcCCCE-EEECCCCCh----------HHHHHHHHHcCCe
Confidence 4567788888999986 567778842 3678889999986
No 36
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=38.52 E-value=16 Score=28.97 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhccCCC---------ceEEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 009474 195 DAQAEELRKSLWEKNLP---------AKVYVGMRYWHPFTEEAIEQIKRDGITKLV 241 (534)
Q Consensus 195 ~~qa~~L~~~L~~~g~~---------v~V~~AMRY~~P~I~eaL~~L~~~G~~rIv 241 (534)
++.|+++.++|...|.+ ++|.+|-.-..-....+.++|++.|++..+
T Consensus 20 ~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~i 75 (81)
T 1uta_A 20 AEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCI 75 (81)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCB
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEE
Confidence 45667777777665544 344444322333344455555555555443
No 37
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=37.50 E-value=1.4e+02 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=10.4
Q ss_pred cHHHHHHHhhhcCCceEEEEc
Q 009474 371 YTDETIIKLGQKGVKSLLAVP 391 (534)
Q Consensus 371 ~t~d~L~~L~~~G~k~VvVvP 391 (534)
++++.++.+++.|++.|-+.+
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~ 43 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYP 43 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECT
T ss_pred CHHHHHHHHHHcCCCEEeecC
Confidence 445555555555555554443
No 38
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=36.84 E-value=56 Score=31.20 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=26.0
Q ss_pred EEEEEEccCCCC--ChhhHHHHHHhhcCCCCcccCCchh
Q 009474 122 IGVLLLNLGGPE--TLEDVQPFLFNLFADPDIIRLPRLF 158 (534)
Q Consensus 122 ~aVLLvnlGtP~--s~~dV~~fL~~~l~D~~VI~lP~~~ 158 (534)
.++ .|.|+|+ |..|+-..+.+.+.-|.++.+|.|+
T Consensus 212 ~g~--yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~ 248 (298)
T 4b4o_A 212 HGV--LNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAV 248 (298)
T ss_dssp CEE--EEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHH
T ss_pred CCe--EEEECCCccCHHHHHHHHHHHhCcCCcccCCHHH
Confidence 465 4566555 7789999999999877777788653
No 39
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=34.12 E-value=1.2e+02 Score=29.41 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=61.9
Q ss_pred EEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccc--cchHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHHHHH
Q 009474 214 VYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSI--STSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITA 291 (534)
Q Consensus 214 V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~--~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI~A 291 (534)
|.++|.=|.-|.-. +-.++++|++=+-++-+||+-.. ...+...+.+....+.. ++++.+++--+....+++.
T Consensus 7 vvvl~SGGkDSs~a-l~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~L----GIpl~~v~~~g~~~~e~e~ 81 (237)
T 3rjz_A 7 VAVLYSGGKDSNYA-LYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARAL----GIPLVKGFTQGEKEKEVED 81 (237)
T ss_dssp EEEECCSSHHHHHH-HHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHH----TCCEEEEEC------CHHH
T ss_pred EEEEecCcHHHHHH-HHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHc----CCCEEEEECCCCchHHHHH
Confidence 44444444333322 33456678764445567776311 00000112222222222 2345555544444556665
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCc---hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCC
Q 009474 292 MANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP---YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWL 368 (534)
Q Consensus 292 la~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDp---Y~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~~WL 368 (534)
+.+ .++..+. + +++| ||. |++ .=.+.+.+++|+.- .+ -=|-
T Consensus 82 l~~----~l~~~~i-~--~vv~-------------Gdi~s~yqr---~r~e~vc~~~gl~~-----------~~--PLW~ 125 (237)
T 3rjz_A 82 LKR----VLSGLKI-Q--GIVA-------------GALASKYQR---KRIEKVAKELGLEV-----------YT--PAWG 125 (237)
T ss_dssp HHH----HHTTSCC-S--EEEC-------------C---CCSHH---HHHHHHHHHTTCEE-----------EC--SSSS
T ss_pred HHH----HHHhcCC-c--EEEE-------------CCcchHHHH---HHHHHHHHHcCCEE-----------Ec--cccC
Confidence 553 4433321 1 2433 443 553 34566788887531 11 1265
Q ss_pred CCcHHHHHHHhhhcCCceEEEE
Q 009474 369 KPYTDETIIKLGQKGVKSLLAV 390 (534)
Q Consensus 369 ~P~t~d~L~~L~~~G~k~VvVv 390 (534)
. +.++.++++.+.|++.+++.
T Consensus 126 ~-d~~~Ll~e~i~~G~~aiiv~ 146 (237)
T 3rjz_A 126 R-DAKEYMRELLNLGFKIMVVG 146 (237)
T ss_dssp C-CHHHHHHHHHHTTCEEEEEE
T ss_pred C-CHHHHHHHHHHCCCEEEEEE
Confidence 5 46779999999999887754
No 40
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=33.29 E-value=2.6e+02 Score=26.25 Aligned_cols=62 Identities=18% Similarity=0.004 Sum_probs=40.8
Q ss_pred EEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 355 TLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 355 ~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
++++++..=..+|. .++++.++.+++.|++.|-+.+..+. + + -.+--.+.++.++++|+.-.
T Consensus 3 kigi~~~~~~~~~~-~~~~~~l~~~~~~G~~~vEl~~~~~~-~-~--~~~~~~~~~~~l~~~gl~i~ 64 (294)
T 3vni_A 3 KHGIYYAYWEQEWE-ADYKYYIEKVAKLGFDILEIAASPLP-F-Y--SDIQINELKACAHGNGITLT 64 (294)
T ss_dssp CEEEEGGGGCSSSC-CCHHHHHHHHHHHTCSEEEEESTTGG-G-C--CHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEehhhhcCCcC-cCHHHHHHHHHHcCCCEEEecCcccC-C-c--CHHHHHHHHHHHHHcCCeEE
Confidence 35555543334553 37999999999999999999875431 1 1 11112346888999999744
No 41
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=33.18 E-value=36 Score=26.50 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCCC---------ceEEEeeecCCCCHHHHHHHHHHcCCCE
Q 009474 195 DAQAEELRKSLWEKNLP---------AKVYVGMRYWHPFTEEAIEQIKRDGITK 239 (534)
Q Consensus 195 ~~qa~~L~~~L~~~g~~---------v~V~~AMRY~~P~I~eaL~~L~~~G~~r 239 (534)
++.|+.+.++|...|.+ ++|.+|-.-..-...+++++|++.|++-
T Consensus 20 ~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~ 73 (79)
T 1x60_A 20 KANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDA 73 (79)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCce
Confidence 45667777777655544 3444443222233344555555555543
No 42
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=30.01 E-value=2.5e+02 Score=27.94 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=77.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. ++. ..|- ++.+-|.+++.+.-+.+.+.+..-...++.-++|.
T Consensus 144 PHvWldp~n~~~~a~~I~~~L~~~DP-~~a----------~~Y~-~Na~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H 211 (321)
T 1xvl_A 144 PHAWMSPRNALVYVENIRQAFVELDP-DNA----------KYYN-ANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCE 211 (321)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHCG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEE
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHCc-ccH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhhCcccCCEEEEEC
Confidence 56788999999999999999987642 210 0111 34456888887777777666531000011222222
Q ss_pred cCc---------------CCCCCCCCcHHH---HHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SRV---------------GPVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr~---------------G~~~WL~P~t~d---~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
..| |..+=.+|+..+ .++.+++.|++-| ++-..|-..-+|+| +++.|.+..
T Consensus 212 ~af~Yfa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~I-f~e~~~~~~~~~~i----------A~e~g~~v~ 280 (321)
T 1xvl_A 212 GAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTI-FCESTVSDKGQKQV----------AQATGARFG 280 (321)
T ss_dssp STTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEE-EEETTSCSHHHHHH----------HTTTCCEEE
T ss_pred chHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeCCCChHHHHHH----------HHhcCCcee
Confidence 211 111113465543 3344555677544 44445555555444 668898753
Q ss_pred --EEcCCCCCC----HHHHHHHHH---HHHHhCC
Q 009474 422 --GRVPALGCE----ATFISDLAD---AVIESLP 446 (534)
Q Consensus 422 --~rvp~LNds----p~fI~~Lad---~V~e~L~ 446 (534)
.+...|+.. ..+++.+.+ .+.+.|.
T Consensus 281 ~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL~ 314 (321)
T 1xvl_A 281 GNLYVDSLSTEEGPVPTFLDLLEYDARVITNGLL 314 (321)
T ss_dssp EEECSSCCCCSSSSCCSHHHHHHHHHHHHHTTSS
T ss_pred eeecCCccCCCCCCccCHHHHHHHHHHHHHHHHc
Confidence 234666542 356666654 4444443
No 43
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=29.00 E-value=2.9e+02 Score=26.93 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. +.. ..|- ++.+-|.+++.+.-+.+.+.+.. ..++.-++|-
T Consensus 121 PHvWldp~~~~~~a~~I~~~L~~~dP-~~a----------~~y~-~N~~~~~~~L~~Ld~~~~~~l~~--~~~~~~v~~H 186 (286)
T 3gi1_A 121 PHTWTDPVLAGEEAVNIAKELGRLDP-KHK----------DSYT-KNAKAFKKEAEQLTEEYTQKFKK--VRSKTFVTQH 186 (286)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHCG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHHHTT--CSCCEEEEEE
T ss_pred CceecCHHHHHHHHHHHHHHHHHHCh-hhH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEEC
Confidence 56888999999999999999987642 210 0111 34456888888777777776631 1123334443
Q ss_pred cCcC---------------CCCCCCCcHH---HHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SRVG---------------PVEWLKPYTD---ETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr~G---------------~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
..|| ..+=.+|+.. +.++.+.+.+++- +++-..|-...+|+ ++++.|.+.
T Consensus 187 ~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~-if~e~~~~~~~~~~----------la~~~g~~v- 254 (286)
T 3gi1_A 187 TAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKT-IFAEDNVNPKIAHA----------IAKSTGAKV- 254 (286)
T ss_dssp SCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCE-EEECTTSCTHHHHH----------HHHTTTCEE-
T ss_pred CchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCE-EEEeCCCChHHHHH----------HHHHhCCeE-
Confidence 3222 1001245544 3445556667754 44445565555544 466889874
Q ss_pred EEcCCCCC----CHHHHHHHHHHH
Q 009474 422 GRVPALGC----EATFISDLADAV 441 (534)
Q Consensus 422 ~rvp~LNd----sp~fI~~Lad~V 441 (534)
..+-.|.. .+.+++.|..-+
T Consensus 255 ~~l~pl~~~~~~~~~Y~~~m~~n~ 278 (286)
T 3gi1_A 255 KTLSPLEAAPSGNKTYLENLRANL 278 (286)
T ss_dssp EECCCSCSCCSSSCCHHHHHHHHH
T ss_pred EEecccccCCCCcCCHHHHHHHHH
Confidence 34433332 225666665443
No 44
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=28.46 E-value=4.2e+02 Score=25.82 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=60.6
Q ss_pred CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCccc------------ccchHHHHHHHHHHHHhccccCCceEEE
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS------------ISTSGSSLRLLESIFREDEYLVNMQHTV 278 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS------------~~TtGs~~~~l~e~~~~~~~~~~i~i~~ 278 (534)
+++|.+|+-=..|...+..+..++.|.+=++-+||=|..- ..+.....+.+..++........+.-+.
T Consensus 54 P~pvT~Ai~P~~p~~~~~a~~A~~~G~EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnNHm 133 (261)
T 2qv5_A 54 PPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYL 133 (261)
T ss_dssp CTTSEEEEETTCSSHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCCSEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHHHHHCCCcEEEeccc
Confidence 6788999877789999999999999999999999987541 1222222233444443333333455566
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q 009474 279 IPSWYQREGYITAMANLIEK 298 (534)
Q Consensus 279 I~~~~d~p~yI~Ala~~I~~ 298 (534)
...|-.++.-.+.+.+.+++
T Consensus 134 GS~~T~~~~~M~~vm~~L~~ 153 (261)
T 2qv5_A 134 GGRFLAEQSALEPVMRDIGK 153 (261)
T ss_dssp CTTGGGCHHHHHHHHHHHHH
T ss_pred ccchhcCHHHHHHHHHHHHH
Confidence 77888898888887755543
No 45
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=28.25 E-value=2.9e+02 Score=26.36 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEc
Q 009474 354 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRV 424 (534)
Q Consensus 354 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rv 424 (534)
+++++++..=...|..-++++ ++.+++.|++.|-+.......+.-+.+ .+.++.++++|+......
T Consensus 21 mklg~~~~~~~~~~~~~~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~----~~l~~~l~~~gl~i~~~~ 86 (309)
T 2hk0_A 21 MKHGIYYSYWEHEWSAKFGPY-IEKVAKLGFDIIEVAAHHINEYSDAEL----ATIRKSAKDNGIILTAGI 86 (309)
T ss_dssp CEEEEEGGGGCSCTTSCSHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHH----HHHHHHHHHTTCEEEEEC
T ss_pred ceeEEehhhcccccccccHHH-HHHHHHhCCCEEEeccCCccccchhhH----HHHHHHHHHcCCeEEEec
Confidence 567777643234465567888 999999999999987653211110122 246888899999754433
No 46
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=27.83 E-value=1e+02 Score=30.01 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcc-CCCceEEEeeecCCCC--------------------HHHHHHHHHHcCCCEEEEEec
Q 009474 195 DAQAEELRKSLWEK-NLPAKVYVGMRYWHPF--------------------TEEAIEQIKRDGITKLVVLPL 245 (534)
Q Consensus 195 ~~qa~~L~~~L~~~-g~~v~V~~AMRY~~P~--------------------I~eaL~~L~~~G~~rIvvlPL 245 (534)
+..++++.++|.++ +.++-|...+.|+.++ +.|.++.|.+.|++++|++-=
T Consensus 48 ~~ia~~~a~~l~~~~~~~~lv~P~i~yG~~s~~h~~fPGTisl~~~tl~~~l~di~~sl~~~G~rrlvivNg 119 (254)
T 3lub_A 48 HDIAVEAAELALSRSGVRCMVMPPVPFGAHNPGQRELPFCIHTRYATQQAILEDIVSSLHVQGFRKLLILSG 119 (254)
T ss_dssp HHHHHHHHHHHHHHHCCCEEECCCBCCBCCCTTTTTSTTCCBCCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHhhhhhcCCCEEEeCCccccCCCccccCcCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 34455555555443 4556666666666521 344555555556666655554
No 47
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=27.19 E-value=4.1e+02 Score=25.68 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=60.6
Q ss_pred CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCccc------------ccchHHHHHHHHHHHHhccccCCceEE
Q 009474 210 LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS------------ISTSGSSLRLLESIFREDEYLVNMQHT 277 (534)
Q Consensus 210 ~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS------------~~TtGs~~~~l~e~~~~~~~~~~i~i~ 277 (534)
.+++|.+|+-=..|...+..+..++.|.+=++-+||=|..- ..+.....+.+..++........+.-+
T Consensus 26 Lp~pvT~Ai~P~~p~~~~~a~~A~~~G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnNH 105 (245)
T 2nly_A 26 GEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNH 105 (245)
T ss_dssp CSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEecc
Confidence 46889999877779999999999999999999999977521 122222223344444443333345556
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q 009474 278 VIPSWYQREGYITAMANLIEK 298 (534)
Q Consensus 278 ~I~~~~d~p~yI~Ala~~I~~ 298 (534)
....|-.++.-.+.+.+.+++
T Consensus 106 mGS~~T~~~~~m~~vm~~l~~ 126 (245)
T 2nly_A 106 MGSKIVENEKIMRAILEVVKE 126 (245)
T ss_dssp ECTTGGGCHHHHHHHHHHHHH
T ss_pred cccchhcCHHHHHHHHHHHHH
Confidence 777888888887777755543
No 48
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=27.04 E-value=3.9e+02 Score=26.47 Aligned_cols=142 Identities=13% Similarity=0.173 Sum_probs=79.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. ++. ..|- ++.+-|.+++.+.-+.+.+.+..-...++.-++|-
T Consensus 130 PHvWldp~n~~~~a~~I~~~L~~~DP-~~a----------~~Y~-~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H 197 (307)
T 3ujp_A 130 PHAWMSPRNALVYVENIRQAFVELDP-DNA----------KYYN-ANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCE 197 (307)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHCG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEE
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHhCc-hhH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEEC
Confidence 56889999999999999999987642 210 0111 34456888888877777776631100112223322
Q ss_pred cC-----------------cCCCCCCCCcHH---HHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCe
Q 009474 360 SR-----------------VGPVEWLKPYTD---ETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 419 (534)
Q Consensus 360 Sr-----------------~G~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~ 419 (534)
.. +.++ .+|+.. +.++.+.+.+++-|++- ..|-...+| .++++.|.+
T Consensus 198 ~af~Yfa~~yGl~~~~~~~i~~~--~ePs~~~l~~l~~~ik~~~v~~If~e-~~~~~k~~~----------~ia~e~g~~ 264 (307)
T 3ujp_A 198 GAFSYLARDYGMEEIYMWPINAE--QQFTPKQVQTVIEEVKTNNVPTIFCE-STVSDKGQK----------QVAQATGAR 264 (307)
T ss_dssp STTHHHHHHTTCEEEEEESSCCS--SCCCHHHHHHHHHHHHTTTCSEEEEE-TTSCSHHHH----------HTTTTTCCE
T ss_pred chHHHHHHHCCCcEEEeeccCCC--CCCCHHHHHHHHHHHHhcCCcEEEEe-CCCChHHHH----------HHHHHhCCc
Confidence 21 1122 356544 44555666787665554 455554444 445688876
Q ss_pred e--EEEcCCCCCC----HHHHHHHHHH---HHHhCC
Q 009474 420 K--WGRVPALGCE----ATFISDLADA---VIESLP 446 (534)
Q Consensus 420 ~--~~rvp~LNds----p~fI~~Lad~---V~e~L~ 446 (534)
. ..++..|+.. ..++++|... +.+.|.
T Consensus 265 v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL~ 300 (307)
T 3ujp_A 265 FGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGLL 300 (307)
T ss_dssp EEEEECSSCCCCSSSSCSSHHHHHHHHHHHHHTTSC
T ss_pred eeeeeeccCCCCCCCCccCHHHHHHHHHHHHHHHhc
Confidence 3 2356666532 3466655544 455554
No 49
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=26.78 E-value=1.4e+02 Score=26.93 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=26.3
Q ss_pred hhcCCceEEEEccccchhhhh---hhHhHHHHHHHHHHHcCCeeEEEcC
Q 009474 380 GQKGVKSLLAVPISFVSEHIE---TLEEIDVEYKELALKSGIEKWGRVP 425 (534)
Q Consensus 380 ~~~G~k~VvVvPigFvsDhlE---TL~EIdiE~rela~e~G~~~~~rvp 425 (534)
.+-|.++|++.|++=.|+.+. +=-++=.+..+..++.|++ ..|+|
T Consensus 69 ~kv~~~~ivlYPyAHLSs~La~P~~A~~iL~~le~~L~~~g~e-V~raP 116 (143)
T 2hl0_A 69 EQVKAENVFVYPFAHLSSELAKPSVAMDILNRVYQGLKERGFN-VGKAP 116 (143)
T ss_dssp HHHTCCEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHHHTTCE-EEECC
T ss_pred HhcCCCEEEEeccccccCccCChHHHHHHHHHHHHHHHhCCCe-EEEeC
Confidence 444788999999987775542 1222222234455567774 45665
No 50
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=26.00 E-value=2e+02 Score=28.17 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=44.6
Q ss_pred cHHHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 009474 371 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 442 (534)
Q Consensus 371 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp~fI~~Lad~V~ 442 (534)
-++.-++++++.|+..+++.-..+ +| ..++++.++++|+. ...+-+++++++.++.+++...
T Consensus 113 g~~~f~~~~~~aGvdGvIipDlp~--------ee-~~~~~~~~~~~gl~-~I~lvap~t~~eri~~i~~~~~ 174 (271)
T 3nav_A 113 GIDDFYQRCQKAGVDSVLIADVPT--------NE-SQPFVAAAEKFGIQ-PIFIAPPTASDETLRAVAQLGK 174 (271)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCG--------GG-CHHHHHHHHHTTCE-EEEEECTTCCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHCCCCEEEECCCCH--------HH-HHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHHHCC
Confidence 357789999999998887743222 23 34588999999997 4455578888888777776643
No 51
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=25.89 E-value=78 Score=31.60 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhccccCCCCEEEEE--ecCcCCCCCC---CCcHHHHHHHhhhcCCceEEEEccccch-hhh----hhh
Q 009474 333 EMEECVDLIMEELEKRKITNAYTLAY--QSRVGPVEWL---KPYTDETIIKLGQKGVKSLLAVPISFVS-EHI----ETL 402 (534)
Q Consensus 333 q~~eTa~~v~e~Lg~~~~~~~~~laf--QSr~G~~~WL---~P~t~d~L~~L~~~G~k~VvVvPigFvs-Dhl----ETL 402 (534)
.+..+..-+.+.|... . +++.++ |+-+ .+|+ .|...+.|++|.++| ++-++--+|+- |.. |.+
T Consensus 47 ~~~~~~~~vl~~l~~~-p--~~~F~~~e~~~~--~~w~~~~~Pe~~~~vk~lV~~G--rle~vgG~wve~D~~~~~~esl 119 (298)
T 1o7d_A 47 GVQYILDSVISSLLAN-P--TRRFIYVEIAFF--SRWWRQQTNATQKIVRELVRQG--RLEFANGGWVMNDEATTHYGAI 119 (298)
T ss_dssp CHHHHHHHHHHHHHHC-T--TCCEEECCHHHH--HHHHHTSCHHHHHHHHHHHHTT--SEEESSCSSSCBCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHC-C--CCeEEEecchHh--HHHHHhcCHHHHHHHHHHHHCC--CEEEECceeeccccCCCCHHHH
Confidence 4667777777776422 1 244443 3321 3453 599999999999998 67777777874 544 555
Q ss_pred HhHHHHHHHHHH-HcCCe----eEEEcCCCCCCHHHHHHHHHH
Q 009474 403 EEIDVEYKELAL-KSGIE----KWGRVPALGCEATFISDLADA 440 (534)
Q Consensus 403 ~EIdiE~rela~-e~G~~----~~~rvp~LNdsp~fI~~Lad~ 440 (534)
-+-=....+.++ +.|.. ..=.+.+.|.+..+...|++.
T Consensus 120 irQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~~lP~il~~~ 162 (298)
T 1o7d_A 120 IDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQM 162 (298)
T ss_dssp HHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccHHHHHHHHHc
Confidence 543333455554 46763 333677888888888888764
No 52
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=25.77 E-value=2.5e+02 Score=27.77 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcc---cccchHHHHHHHHHHHHh
Q 009474 210 LPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQF---SISTSGSSLRLLESIFRE 267 (534)
Q Consensus 210 ~~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqy---S~~TtGs~~~~l~e~~~~ 267 (534)
.+++|..|- +..++.++++.. .+.|++-++++| |.| ...+-...++.+..+.+.
T Consensus 76 grvpviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--Pyy~~~~~~s~~~l~~~f~~va~a 135 (309)
T 3fkr_A 76 GRVPVIVTT--SHYSTQVCAARSLRAQQLGAAMVMAMP--PYHGATFRVPEAQIFEFYARVSDA 135 (309)
T ss_dssp TSSCEEEEC--CCSSHHHHHHHHHHHHHTTCSEEEECC--SCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCchHHHHHHHHHHHHHcCCCEEEEcC--CCCccCCCCCHHHHHHHHHHHHHh
Confidence 356777765 678899998854 457999999988 556 233444445555555543
No 53
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=25.55 E-value=1.1e+02 Score=30.69 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=40.5
Q ss_pred CCCCCC-cHHHHHHHhhhc-CCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCH
Q 009474 365 VEWLKP-YTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA 431 (534)
Q Consensus 365 ~~WL~P-~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~rvp~LNdsp 431 (534)
..|.+| +..++|+.+++. |++.|.+.....-.+..-+..++ .+.++.++++|++ +.-+..++.++
T Consensus 15 ~~~~g~~~~~~~L~~i~~~~G~~~ve~~~~~~~~g~~~~~~~~-~~~~~~l~~~GL~-i~~~~~~~~~~ 81 (367)
T 1tz9_A 15 FRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEI-QALKQSVEQEGLA-LLGIESVAIHD 81 (367)
T ss_dssp CBCCCTTTCCSCHHHHTTSTTCCEEEECCSSSCTTCCCCHHHH-HHHHHHHHHTTCE-EEEECSCCCCH
T ss_pred eeecCCCCChHHHHHHhhcCCCCeEEecCCCCCCCCCCCHHHH-HHHHHHHHHCCCe-EEEEecCCCcH
Confidence 457788 777789999999 99999875321100111011222 2468888899997 44455666554
No 54
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=25.19 E-value=2.5e+02 Score=27.18 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=74.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. +.. ..|- ++.+-|.+++.+.-+.+.+.+.. ..++.-++|-
T Consensus 119 PH~Wldp~~~~~~a~~I~~~L~~~dP-~~a----------~~y~-~N~~~~~~~L~~Ld~~~~~~l~~--~~~~~~v~~H 184 (284)
T 3cx3_A 119 PHTWLDPEKAGEEAQIIADKLSEVDS-EHK----------ETYQ-KNAQAFIKKAQELTKKFQPKFEK--ATQKTFVTQH 184 (284)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHSG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHHHHS--CSCCCEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHHHHHhCc-ccH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEEC
Confidence 56888999999999999999987642 210 0111 34456888777777766666531 1111222222
Q ss_pred cCc---------------CCCCCCCCcHH---HHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SRV---------------GPVEWLKPYTD---ETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr~---------------G~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
..| |..+=.+|+.. +.++.+.+.|++- +++-..|-..-+|+ ++++.|.+.
T Consensus 185 ~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~-if~e~~~~~~~~~~----------ia~~~g~~v- 252 (284)
T 3cx3_A 185 TAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKT-IFTESNASSKVAET----------LVKSTGVGL- 252 (284)
T ss_dssp SCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCC-EEECSSSCCHHHHH----------HHSSSSCCE-
T ss_pred CchHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCE-EEEeCCCCcHHHHH----------HHHHcCCeE-
Confidence 211 11000234433 4445556667754 45555665555544 466889874
Q ss_pred EEcCCCCC----CHHHHHHHHHHH
Q 009474 422 GRVPALGC----EATFISDLADAV 441 (534)
Q Consensus 422 ~rvp~LNd----sp~fI~~Lad~V 441 (534)
..+..+.. ...+++.|...+
T Consensus 253 ~~l~~l~~~~~~~~~Y~~~m~~n~ 276 (284)
T 3cx3_A 253 KTLNPLESDPQNDKTYLENLEENM 276 (284)
T ss_dssp EECCCSSSCCCSSCCHHHHHHHHH
T ss_pred EEecCcccCCCCcccHHHHHHHHH
Confidence 45554443 235666665443
No 55
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.58 E-value=2.3e+02 Score=27.41 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=77.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+. +.. ..|- ++.+-|.+++.+.-+.+.+.+.. ..++.-++|-
T Consensus 116 PH~Wldp~~~~~~a~~I~~~L~~~dP-~~a----------~~y~-~N~~~~~~~L~~Ld~~~~~~l~~--~~~~~~v~~H 181 (284)
T 2prs_A 116 MHLWLSPEIARATAVAIHGKLVELMP-QSR----------AKLD-ANLKDFEAQLASTETQVGNELAP--LKGKGYFVFH 181 (284)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHCG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHHHGG--GTTCCEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCc-hhH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEC
Confidence 56888999999999999999987642 210 0111 34456888877777777666532 1112223332
Q ss_pred cCcC---------------CCCCCCCcHH---HHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SRVG---------------PVEWLKPYTD---ETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr~G---------------~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
..+| ..+=.+|+.. +.++.+++.|++- +++-..|-..-+|+| +++.|.+..
T Consensus 182 ~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~-if~e~~~~~~~~~~i----------a~~~g~~v~ 250 (284)
T 2prs_A 182 DAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATC-VFAEPQFRPAVVESV----------ARGTSVRMG 250 (284)
T ss_dssp SCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCE-EEECTTSCSHHHHHH----------TTTSCCEEE
T ss_pred ccHHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCE-EEEeCCCChHHHHHH----------HHHcCCeEE
Confidence 2221 1111356544 3445556667754 455556655555554 568898743
Q ss_pred EEcCCCCC-----CHHHHHHHHHHH
Q 009474 422 GRVPALGC-----EATFISDLADAV 441 (534)
Q Consensus 422 ~rvp~LNd-----sp~fI~~Lad~V 441 (534)
.+..|+. ...+++.|.+.+
T Consensus 251 -~ld~l~~~~~~~~~~Y~~~m~~n~ 274 (284)
T 2prs_A 251 -TLDPLGTNIKLGKTSYSEFLSQLA 274 (284)
T ss_dssp -ECCTTCTTSCCSTTHHHHHHHHHH
T ss_pred -EeccCcccCCCCcccHHHHHHHHH
Confidence 4555554 125777775544
No 56
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=23.82 E-value=4.1e+02 Score=24.02 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=27.1
Q ss_pred EEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH
Q 009474 214 VYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 264 (534)
Q Consensus 214 V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~ 264 (534)
|.+---|.++.+.+..+++.+ +|.||+. +|.|-.+.++.....++++
T Consensus 31 v~v~dL~~~~D~~~~~~~l~~--aD~iV~~--~P~y~~~~pa~lK~~iDrv 77 (177)
T 3ha2_A 31 VTWHPLVADFNVEQEQSLLLQ--NDRIILE--FPLYWYSAPALLKQWMDTV 77 (177)
T ss_dssp EEEEECCTTCCHHHHHHHHHT--CSEEEEE--EECBTTBCCHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHh--CCEEEEE--CChhhccCCHHHHHHHHHH
Confidence 333334447788888888765 5666554 3445555555555544544
No 57
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=23.54 E-value=92 Score=30.92 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCCHH---HHHHHHHHcCCCEEEEEecCCcccccchHHHHH--HHHHHHHhccccCCceEEEeCCCCCCHHH
Q 009474 221 WHPFTE---EAIEQIKRDGITKLVVLPLYPQFSISTSGSSLR--LLESIFREDEYLVNMQHTVIPSWYQREGY 288 (534)
Q Consensus 221 ~~P~I~---eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~--~l~e~~~~~~~~~~i~i~~I~~~~d~p~y 288 (534)
+.|++. ++.+++.++| ++|+++++- ..-+|++-. .+.+.+.+ .+++.+++++++-...-+.
T Consensus 66 Sqps~~~~~~~f~~l~~~g-~~ii~i~iS----s~LSGTy~sA~~aa~~~~e--~~~~~~I~ViDS~~~s~g~ 131 (297)
T 3nyi_A 66 SLPSVESYADVFRSFVEQG-FPVVCFTIT----TLFSGSYNSAINAKSLVLE--DYPDANICVIDSKQNTVTQ 131 (297)
T ss_dssp ECCCHHHHHHHHHHHHTTT-CCEEEEESC----TTTCSHHHHHHHHHHHHHH--HCTTCCEEEEECSCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHCC-CeEEEEECC----CcHhHHHHHHHHHHHHHHh--hCCCCeEEEEeCCchHHHH
Confidence 568876 5556777788 999999994 434444432 22322211 2355678999987655443
No 58
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=23.34 E-value=1e+02 Score=31.05 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCCHH---HHHHHHHHcCCCEEEEEecCCcccccchHHHHHH--HHHHHHhccccCCceEEEeCCCCCCHHH
Q 009474 221 WHPFTE---EAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL--LESIFREDEYLVNMQHTVIPSWYQREGY 288 (534)
Q Consensus 221 ~~P~I~---eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~--l~e~~~~~~~~~~i~i~~I~~~~d~p~y 288 (534)
+.|++. ++.+++.++| ++||++++- ..-+|++-.. +.+.+.+ .+++.+++++++-...-+.
T Consensus 97 SqPs~~~~~~~f~~l~~~g-~~Ii~I~iS----S~LSGTy~sA~~Aa~~~~e--~~~~~~I~ViDS~~~s~g~ 162 (320)
T 3pl5_A 97 SQVNVGQFESYFRQSAENG-QEVLYIAFS----SVLSGTYQSAVMARDIVLE--EYPQASIEIVDTLAATGGE 162 (320)
T ss_dssp ECCCHHHHHHHHHHHHHTT-CCEEEEECC----TTTCTHHHHHHHHHHHHHH--HCTTCCEEEEECCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC-CeEEEEecC----chHhHHHHHHHHHHHHHHh--hCCCCeEEEEcCCchHHHH
Confidence 457766 4555777788 899999994 4444554332 2333322 2455678999987655443
No 59
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=23.18 E-value=1.8e+02 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=18.5
Q ss_pred CCch---HHHHHHHHHHHHHHHhccC
Q 009474 187 GSPL---RRITDAQAEELRKSLWEKN 209 (534)
Q Consensus 187 gSPL---~~~T~~qa~~L~~~L~~~g 209 (534)
+||- ...|+..++.+.+.+.+.|
T Consensus 9 gS~r~~~~s~t~~la~~~~~~~~~~g 34 (208)
T 2hpv_A 9 AHPLTKEESRSVRALETFLASYRETN 34 (208)
T ss_dssp CCSSCTTTCHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 5776 5789999999999888766
No 60
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=22.70 E-value=3.9e+02 Score=26.00 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=36.0
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
+++|..|- +..+++++++.. .+.|++-++++|- .|...|-...++.+.++.+.
T Consensus 69 rvpviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~P--~y~~~s~~~l~~~f~~va~a 124 (294)
T 2ehh_A 69 RIKVIAGT--GGNATHEAVHLTAHAKEVGADGALVVVP--YYNKPTQRGLYEHFKTVAQE 124 (294)
T ss_dssp SSEEEEEC--CCSCHHHHHHHHHHHHHTTCSEEEEECC--CSSCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEec--CCCCHHHHHHHHHHHHhcCCCEEEECCC--CCCCCCHHHHHHHHHHHHHh
Confidence 56777664 678899998755 4579999999874 46555555555555555543
No 61
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=22.24 E-value=4.1e+02 Score=26.12 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=35.8
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
+++|..|- +..+++++++.. ++.|++-++++|- .|...+-...++.+.++.+.
T Consensus 85 rvpviaGv--g~~st~~ai~la~~A~~~Gadavlv~~P--~y~~~~~~~l~~~f~~ia~a 140 (304)
T 3cpr_A 85 RAKLIAGV--GTNNTRTSVELAEAAASAGADGLLVVTP--YYSKPSQEGLLAHFGAIAAA 140 (304)
T ss_dssp TSEEEEEC--CCSCHHHHHHHHHHHHHTTCSEEEEECC--CSSCCCHHHHHHHHHHHHHH
T ss_pred CCcEEecC--CCCCHHHHHHHHHHHHhcCCCEEEECCC--CCCCCCHHHHHHHHHHHHHh
Confidence 56777664 678899998855 4479999999874 46555555555555555543
No 62
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=22.22 E-value=1.9e+02 Score=28.64 Aligned_cols=63 Identities=22% Similarity=0.159 Sum_probs=40.9
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHH--HHHHHHHhccccCCceEEEeCCCCCCHHHH
Q 009474 220 YWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLR--LLESIFREDEYLVNMQHTVIPSWYQREGYI 289 (534)
Q Consensus 220 Y~~P~I~eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~--~l~e~~~~~~~~~~i~i~~I~~~~d~p~yI 289 (534)
=+.|++.+-.+.+.+ |+++|+++++- ..-+|++-. .+.+.+.+ .+++.+++++++-...-++-
T Consensus 80 TSqps~~~~~~~f~~-~~~~Ii~i~iS----s~LSGTy~sA~~Aa~~~~e--~~~~~~I~ViDS~~~s~g~g 144 (298)
T 3jr7_A 80 TSCPSPERYMESYHC-DAERIYVVTLS----AELSGSYNSAVLGKNLYEE--EYGEKQIHVFNSRSASVGET 144 (298)
T ss_dssp EECCCHHHHHHHHCS-SCSEEEEEESC----TTTCSHHHHHHHHHHHHHH--HHCCCEEEEEECSSCTHHHH
T ss_pred eCCCCHHHHHHHHHh-cCCeEEEEECC----cchhHHHHHHHHHHHHHHh--hCCCCeEEEECCCchhHHHH
Confidence 357999998777764 88999999994 334444432 22232321 23556799999987776543
No 63
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.07 E-value=3.5e+02 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=18.7
Q ss_pred CCch--HHHHHHHHHHHHHHHhccC
Q 009474 187 GSPL--RRITDAQAEELRKSLWEKN 209 (534)
Q Consensus 187 gSPL--~~~T~~qa~~L~~~L~~~g 209 (534)
+||- ...|+..++.+.+.|.+.|
T Consensus 9 ~S~~~~~s~t~~la~~~~~~l~~~g 33 (201)
T 1t5b_A 9 SSILAGYSQSGQLTDYFIEQWREKH 33 (201)
T ss_dssp CCSSGGGCHHHHHHHHHHHHHHHHC
T ss_pred eCCCCCCChHHHHHHHHHHHHHHhC
Confidence 5776 4789999999999998765
No 64
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.03 E-value=3.4e+02 Score=26.49 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=35.4
Q ss_pred CceEEEeeecCCCCHHHHHHHHHH---cCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQIKR---DGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L~~---~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
+++|..|- +..++.++++..+. .|++-++++|- .|...+-...++.+.++.+
T Consensus 70 r~pviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~P--~y~~~s~~~l~~~f~~ia~ 124 (292)
T 2ojp_A 70 RIPVIAGT--GANATAEAISLTQRFNDSGIVGCLTVTP--YYNRPSQEGLYQHFKAIAE 124 (292)
T ss_dssp SSCEEEEC--CCSSHHHHHHHHHHTTTSSCSEEEEECC--CSSCCCHHHHHHHHHHHHT
T ss_pred CCcEEEec--CCccHHHHHHHHHHHHhcCCCEEEECCC--CCCCCCHHHHHHHHHHHHH
Confidence 56677664 77899999987654 59999999874 4655555555555555543
No 65
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=21.84 E-value=4.3e+02 Score=23.60 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEe---cCCcccccchHHHHHHHHH
Q 009474 187 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLP---LYPQFSISTSGSSLRLLES 263 (534)
Q Consensus 187 gSPL~~~T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~~L~~~G~~rIvvlP---LyPqyS~~TtGs~~~~l~e 263 (534)
|.-+-.+-++|.+ |++.|...++.+ . ..+-.-.+.+| +|..-|..-+......+.+
T Consensus 17 g~~ig~~~d~q~~-l~~~l~~~~v~v--~------------------~~~~~~~i~~~~~i~F~~~sa~L~~~~~~~L~~ 75 (169)
T 3ldt_A 17 GLVASIYRDSKRK-IIRDLQKQDIQY--V------------------EYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNN 75 (169)
T ss_dssp CCTTHHHHHHHHH-HHHHHHHTTCEE--E------------------EETTEEEEEEETTTCCC-CCHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhhCCcEE--E------------------EeCCEEEEEecCcceeCCCCceeCHHHHHHHHH
Confidence 3456677788888 999998655433 2 12222345555 4555444433343344444
Q ss_pred HHHhccccCCceEEEe------CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCc
Q 009474 264 IFREDEYLVNMQHTVI------PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGV 318 (534)
Q Consensus 264 ~~~~~~~~~~i~i~~I------~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGl 318 (534)
+.......+...+.+. ..+..+..+=+.=++.+.++|...+.+.+ .|...++|-
T Consensus 76 la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~-ri~~~g~G~ 135 (169)
T 3ldt_A 76 VIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAK-RLKAEGYGD 135 (169)
T ss_dssp HHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTT-TEEECCTTC
T ss_pred HHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHH-HEEEEEECC
Confidence 4433333444445542 23455666777778888888877654322 245566664
No 66
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=21.63 E-value=63 Score=31.92 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=38.0
Q ss_pred CCCCHH---HHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCceEEEeCCCCCCHHH
Q 009474 221 WHPFTE---EAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGY 288 (534)
Q Consensus 221 ~~P~I~---eaL~~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~~~~~~~i~i~~I~~~~d~p~y 288 (534)
+.|++. ++.+++.++|+++|+++++- ..-+|++-.. ..+.+ .+++.+++++++-...-+.
T Consensus 65 Sqps~~~~~~~f~~l~~~g~d~ii~i~iS----s~LSGTy~sA-~~a~~---~~~~~~I~ViDS~~~s~g~ 127 (285)
T 3lup_A 65 SQPSLAELDDLLCQLEKEGYTHVLGLFIA----AGISGFWQNI-QFLIE---EHPNLTIAFPDTKITSAPQ 127 (285)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEECCSC----GGGCTHHHHH-TTHHH---HCTTSEEECCCCCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeCC----CchhHHHHHH-HHHHH---hCCCCCEEEEcCCchHHHH
Confidence 557766 55567778899999999994 4445555332 11222 2345678889887655443
No 67
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=21.37 E-value=3e+02 Score=27.20 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 009474 280 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 359 (534)
Q Consensus 280 ~~~~d~p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQ 359 (534)
+++|-+|.....+++.|.+.|.+.+.... ..|- ++.+-|.+++.+.-+.+.+.+.. ..++.-++|-
T Consensus 132 PHvWldp~n~~~~a~~I~~~L~~~DP~~a-----------~~Y~-~N~~~~~~~L~~Ld~~~~~~l~~--~~~~~~v~~H 197 (312)
T 2o1e_A 132 PHVWLSPVLAQKEVKNITAQIVKQDPDNK-----------EYYE-KNSKEYIAKLQDLDKLYRTTAKK--AEKKEFITQH 197 (312)
T ss_dssp CGGGGSHHHHHHHHHHHHHHHHHHCGGGH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHHS--CSCCEEEESS
T ss_pred CCcccCHHHHHHHHHHHHHHHHHhCchhH-----------HHHH-HHHHHHHHHHHHHHHHHHHHhhc--cCCCEEEEEC
Confidence 46888999999999999999987642111 0111 34456888877777766666531 1112222221
Q ss_pred cC---------------cCCCCCCCCcHHH---HHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeE
Q 009474 360 SR---------------VGPVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 421 (534)
Q Consensus 360 Sr---------------~G~~~WL~P~t~d---~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~ 421 (534)
.. .|..+=.+|+..+ .++.+++.|++ ++++-..|-..-+|+ ++++.|.+.
T Consensus 198 ~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~If~e~~~~~~~~~~----------ia~e~g~~v- 265 (312)
T 2o1e_A 198 TAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVK-VIYFEEIASSKVADT----------LASEIGAKT- 265 (312)
T ss_dssp CTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCC-EEECSSCCCHHHHHH----------HHHHTCCEE-
T ss_pred CchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCCChHHHHH----------HHHHhCCcE-
Confidence 11 1211113565543 34445556664 445555665554444 467889874
Q ss_pred EEcCCC
Q 009474 422 GRVPAL 427 (534)
Q Consensus 422 ~rvp~L 427 (534)
..+..+
T Consensus 266 ~~l~~l 271 (312)
T 2o1e_A 266 EVLNTL 271 (312)
T ss_dssp ECCCCT
T ss_pred EEeccc
Confidence 444433
No 68
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.04 E-value=4.2e+02 Score=26.21 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHH---HHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIE---QIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~---~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
.++..+.++...+..+.+++|..| -+..++.++++ ...+.|++-++++| |.|...+-...++.+.++.+.
T Consensus 75 ~~Er~~v~~~~v~~~~grvpViaG--vg~~st~eai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 147 (314)
T 3qze_A 75 VEEHIQVIRRVVDQVKGRIPVIAG--TGANSTREAVALTEAAKSGGADACLLVT--PYYNKPTQEGMYQHFRHIAEA 147 (314)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEE--CCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEe--CCCcCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHh
No 69
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=21.02 E-value=3.2e+02 Score=25.24 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHHHHHhhhcCCceEEEEccccchhhhhhhHhHHHHHHHHHHHcCCeeEEE
Q 009474 373 DETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR 423 (534)
Q Consensus 373 ~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EIdiE~rela~e~G~~~~~r 423 (534)
++..+.+.+.|++-+.+-+..+ +.+|.+.+ .-+.|.+.|....+.
T Consensus 64 ~~~~~~l~~~gl~i~~~~~~~~--~~~~~~~~----~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 64 RAFHDKCAAHKVTGYAVGPIYM--KSEEEIDR----AFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEE--CSHHHHHH----HHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCeEEEEecccc--CCHHHHHH----HHHHHHHhCCCEEEe
Confidence 4444555566775444433322 22322222 456677788765443
No 70
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=20.77 E-value=4.4e+02 Score=25.74 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHH---HHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIE---QIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~---~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
.++..+.++...+.-+.+++|..| -+..+++++++ ...+.|++-++++| |.|...+-...++.+.++.+.
T Consensus 59 ~~Er~~v~~~~~~~~~grvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~va~a 131 (297)
T 3flu_A 59 VEEHTAVIEAVVKHVAKRVPVIAG--TGANNTVEAIALSQAAEKAGADYTLSVV--PYYNKPSQEGIYQHFKTIAEA 131 (297)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEE--CCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEe--CCCcCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
No 71
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=20.44 E-value=4.1e+02 Score=25.78 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=36.1
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
+++|..|- +..+++++++.. ++.|++-++++|- .|...|-...++.+.++.+.
T Consensus 69 r~pviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~P--~y~~~s~~~l~~~f~~ia~a 124 (289)
T 2yxg_A 69 RVQVIAGA--GSNCTEEAIELSVFAEDVGADAVLSITP--YYNKPTQEGLRKHFGKVAES 124 (289)
T ss_dssp SSEEEEEC--CCSSHHHHHHHHHHHHHHTCSEEEEECC--CSSCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEeC--CCCCHHHHHHHHHHHHhcCCCEEEECCC--CCCCCCHHHHHHHHHHHHHh
Confidence 56777664 678899998755 4469999999874 46555555555555555543
No 72
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.38 E-value=4.1e+02 Score=26.07 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=35.9
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 210 LPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 210 ~~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
.+++|..|- +..++.++++.. .+.|++-++++|- .|...+-...++.+.++.+
T Consensus 79 grvpViaGv--g~~~t~~ai~la~~A~~~Gadavlv~~P--~y~~~s~~~l~~~f~~va~ 134 (303)
T 2wkj_A 79 GKIKLIAHV--GCVSTAESQQLAASAKRYGFDAVSAVTP--FYYPFSFEEHCDHYRAIID 134 (303)
T ss_dssp TTSEEEEEC--CCSSHHHHHHHHHHHHHHTCSEEEEECC--CSSCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHhCCCCEEEecCC--CCCCCCHHHHHHHHHHHHH
Confidence 357777764 677899998755 4469999999874 4655555555555555544
No 73
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.35 E-value=4.3e+02 Score=25.92 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=35.2
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L---~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
+++|..|- +..++.++++.. .+.|++-++++|- .|...+-...++.+.++.+
T Consensus 81 rvpViaGv--g~~~t~~ai~la~~A~~~Gadavlv~~P--~y~~~s~~~l~~~f~~va~ 135 (301)
T 1xky_A 81 RVPVIAGT--GSNNTHASIDLTKKATEVGVDAVMLVAP--YYNKPSQEGMYQHFKAIAE 135 (301)
T ss_dssp SSCEEEEC--CCSCHHHHHHHHHHHHHTTCSEEEEECC--CSSCCCHHHHHHHHHHHHH
T ss_pred CceEEeCC--CCCCHHHHHHHHHHHHhcCCCEEEEcCC--CCCCCCHHHHHHHHHHHHH
Confidence 56677654 678899998855 4479999999874 4655555555555555544
No 74
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.35 E-value=4.2e+02 Score=25.78 Aligned_cols=52 Identities=13% Similarity=0.012 Sum_probs=35.2
Q ss_pred CceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 009474 211 PAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 266 (534)
Q Consensus 211 ~v~V~~AMRY~~P~I~eaL~~L~---~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~ 266 (534)
+++|..|- +..+++++++..+ +.|++-++++|- .|...+-...++.+.++.+
T Consensus 73 rvpviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~P--~y~~~~~~~l~~~f~~va~ 127 (293)
T 1f6k_A 73 QIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVTP--FYYKFSFPEIKHYYDTIIA 127 (293)
T ss_dssp SSEEEEEC--CCSCHHHHHHHHHHHHHHTCSEEEEECC--CSSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEec--CCCCHHHHHHHHHHHHhcCCCEEEECCC--CCCCCCHHHHHHHHHHHHH
Confidence 57777664 7788999987554 469999999874 4655555455555555544
No 75
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=20.18 E-value=4.2e+02 Score=25.82 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHH---HHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIE---QIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~---~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
.++..+.++...+.-+.+++|..| -+..+++++++ ...+.|++-++++| |.|...+-...++.+.++.+.
T Consensus 54 ~~Er~~v~~~~~~~~~grvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~ia~a 126 (292)
T 3daq_A 54 TDEKELILKTVIDLVDKRVPVIAG--TGTNDTEKSIQASIQAKALGADAIMLIT--PYYNKTNQRGLVKHFEAIADA 126 (292)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEE--CCCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEe--CCcccHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
No 76
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=20.14 E-value=7.2e+02 Score=25.56 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCcchhhhccCCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 009474 286 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 365 (534)
Q Consensus 286 p~yI~Ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~ie~~GDpY~~q~~eTa~~v~e~Lg~~~~~~~~~lafQSr~G~~ 365 (534)
..|++++.+.|+...+......-..|.|.. |.|.-. =..++.+..+.+.+.++..+ ..+++...+-+.
T Consensus 83 ~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgG-Gtpt~l-------~~~~l~~ll~~i~~~~~~~~---~~eitie~~p~~- 150 (457)
T 1olt_A 83 DQYLDALEQEIVHRAPLFAGRHVSQLHWGG-GTPTYL-------NKAQISRLMKLLRENFQFNA---DAEISIEVDPRE- 150 (457)
T ss_dssp HHHHHHHHHHHHHHGGGGTTCCEEEEEEEE-SCGGGS-------CHHHHHHHHHHHHHHSCEEE---EEEEEEEECSSS-
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCcccC-------CHHHHHHHHHHHHHhCCCCC---CcEEEEEEccCc-
Confidence 356777777776544433221111234433 666321 13566777777777654321 245555443221
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcc-ccchhhhhhh-----HhHHHHHHHHHHHcCCe--eEEEcC-CCCCCHHHHHH
Q 009474 366 EWLKPYTDETIIKLGQKGVKSLLAVPI-SFVSEHIETL-----EEIDVEYKELALKSGIE--KWGRVP-ALGCEATFISD 436 (534)
Q Consensus 366 ~WL~P~t~d~L~~L~~~G~k~VvVvPi-gFvsDhlETL-----~EIdiE~rela~e~G~~--~~~rvp-~LNdsp~fI~~ 436 (534)
+ +++.++.|++.|+.+|-+ .+ +|-.+.++.+ .+--.+.-+.+++.|+. ....+- .+|++.+-+..
T Consensus 151 --l---~~e~l~~L~~~G~~risl-GvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPget~e~~~~ 224 (457)
T 1olt_A 151 --I---ELDVLDHLRAEGFNRLSM-GVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAF 224 (457)
T ss_dssp --C---CTHHHHHHHHTTCCEEEE-EEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHH
T ss_pred --C---CHHHHHHHHHcCCCEEEE-eeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCCCHHHHHH
Confidence 2 467888888889866654 33 2332333222 12223445677788885 344443 34777655555
Q ss_pred HHHHHHH
Q 009474 437 LADAVIE 443 (534)
Q Consensus 437 Lad~V~e 443 (534)
..+.+.+
T Consensus 225 tl~~~~~ 231 (457)
T 1olt_A 225 TLKRVAE 231 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 77
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.13 E-value=3.7e+02 Score=26.44 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHH---HHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHh
Q 009474 194 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIE---QIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 267 (534)
Q Consensus 194 T~~qa~~L~~~L~~~g~~v~V~~AMRY~~P~I~eaL~---~L~~~G~~rIvvlPLyPqyS~~TtGs~~~~l~e~~~~ 267 (534)
.++..+.++...+.-+.+++|..| -+..++.++++ ...+.|++-++++| |.|...+-...++.+.++.+.
T Consensus 67 ~~Er~~v~~~~~~~~~grvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 139 (304)
T 3l21_A 67 DGEKIELLRAVLEAVGDRARVIAG--AGTYDTAHSIRLAKACAAEGAHGLLVVT--PYYSKPPQRGLQAHFTAVADA 139 (304)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEE--CCCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Done!