Query 009475
Match_columns 534
No_of_seqs 447 out of 2075
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 2.6E-32 5.6E-37 274.8 19.7 253 223-517 16-281 (281)
2 COG2730 BglC Endoglucanase [Ca 100.0 5.6E-28 1.2E-32 257.1 16.6 303 202-531 48-381 (407)
3 cd00257 Fascin Fascin-like dom 99.7 3.3E-17 7.1E-22 145.1 14.4 109 66-182 2-110 (119)
4 PF06268 Fascin: Fascin domain 99.5 4.9E-13 1.1E-17 117.1 11.4 100 76-182 2-102 (111)
5 PF07745 Glyco_hydro_53: Glyco 99.3 8.3E-11 1.8E-15 121.3 20.2 239 229-511 26-294 (332)
6 TIGR03356 BGL beta-galactosida 99.2 6.3E-11 1.4E-15 127.2 13.6 142 221-374 50-212 (427)
7 PF02449 Glyco_hydro_42: Beta- 99.2 7.6E-11 1.6E-15 124.7 10.1 144 222-369 5-167 (374)
8 cd00257 Fascin Fascin-like dom 99.1 2.1E-10 4.5E-15 101.4 9.2 77 65-148 43-119 (119)
9 PRK10150 beta-D-glucuronidase; 99.0 3.2E-08 7E-13 111.1 22.8 152 230-408 316-475 (604)
10 COG3867 Arabinogalactan endo-1 99.0 4.3E-08 9.2E-13 97.1 19.9 165 229-408 65-256 (403)
11 PF06268 Fascin: Fascin domain 98.9 4.5E-09 9.7E-14 92.0 9.6 77 65-148 35-111 (111)
12 PRK09852 cryptic 6-phospho-bet 98.8 9.7E-09 2.1E-13 111.4 9.2 115 221-345 67-182 (474)
13 PRK15014 6-phospho-beta-glucos 98.8 3E-08 6.5E-13 107.8 10.4 115 220-345 64-180 (477)
14 PF02836 Glyco_hydro_2_C: Glyc 98.7 2.1E-07 4.5E-12 95.4 15.7 120 230-378 39-158 (298)
15 TIGR01233 lacG 6-phospho-beta- 98.7 1.2E-07 2.7E-12 102.9 13.3 140 221-373 49-210 (467)
16 COG3934 Endo-beta-mannanase [C 98.7 3.8E-08 8.3E-13 103.0 8.8 149 220-379 19-184 (587)
17 COG2723 BglB Beta-glucosidase/ 98.7 1.2E-07 2.6E-12 100.7 12.0 140 221-371 55-216 (460)
18 PF06229 FRG1: FRG1-like famil 98.7 5.5E-08 1.2E-12 92.8 8.1 82 64-152 37-119 (191)
19 PF00232 Glyco_hydro_1: Glycos 98.6 8.7E-08 1.9E-12 104.0 8.6 142 221-374 54-217 (455)
20 PF06229 FRG1: FRG1-like famil 98.6 2.4E-07 5.1E-12 88.4 10.2 99 70-180 4-104 (191)
21 PRK13511 6-phospho-beta-galact 98.6 1.2E-07 2.6E-12 103.1 9.3 138 221-371 50-209 (469)
22 PLN02998 beta-glucosidase 98.6 1.5E-07 3.2E-12 102.8 8.9 116 220-346 77-193 (497)
23 PLN02849 beta-glucosidase 98.6 1.4E-07 3.1E-12 103.1 8.6 114 222-346 76-190 (503)
24 PLN02814 beta-glucosidase 98.5 1.8E-07 3.8E-12 102.4 8.8 115 221-346 73-188 (504)
25 PRK09593 arb 6-phospho-beta-gl 98.5 3.1E-07 6.8E-12 100.0 10.0 115 221-346 69-185 (478)
26 PRK09589 celA 6-phospho-beta-g 98.5 2.8E-07 6.1E-12 100.3 9.3 115 220-345 62-178 (476)
27 smart00633 Glyco_10 Glycosyl h 98.4 3.7E-05 8E-10 77.1 20.3 127 266-406 14-163 (254)
28 PF01229 Glyco_hydro_39: Glyco 98.3 2.6E-06 5.7E-11 93.3 11.5 185 205-407 24-236 (486)
29 PF12876 Cellulase-like: Sugar 98.3 7.7E-07 1.7E-11 74.6 5.1 78 325-405 1-88 (88)
30 PF14488 DUF4434: Domain of un 98.0 0.00012 2.7E-09 68.7 13.7 137 230-380 23-163 (166)
31 PRK09525 lacZ beta-D-galactosi 97.9 0.00011 2.3E-09 87.3 14.5 112 230-378 374-489 (1027)
32 PF01301 Glyco_hydro_35: Glyco 97.9 5.1E-05 1.1E-09 78.7 10.4 136 230-377 27-179 (319)
33 PF13204 DUF4038: Protein of u 97.9 6.3E-05 1.4E-09 76.9 10.6 136 230-378 33-186 (289)
34 PRK10340 ebgA cryptic beta-D-g 97.9 0.00011 2.3E-09 87.3 13.8 115 230-378 358-476 (1021)
35 COG1874 LacA Beta-galactosidas 97.8 0.0001 2.3E-09 82.5 11.3 138 228-370 31-191 (673)
36 PF03198 Glyco_hydro_72: Gluca 97.8 0.00024 5.1E-09 72.3 12.0 122 230-377 56-180 (314)
37 PF04601 DUF569: Protein of un 97.5 0.0021 4.5E-08 58.4 12.8 106 63-173 5-118 (142)
38 KOG0626 Beta-glucosidase, lact 97.5 0.00042 9.1E-09 74.9 9.3 108 230-346 94-204 (524)
39 PLN03059 beta-galactosidase; P 97.2 0.0038 8.2E-08 71.5 13.9 141 230-378 62-222 (840)
40 PF00331 Glyco_hydro_10: Glyco 97.0 0.027 5.9E-07 58.5 16.8 164 232-407 26-216 (320)
41 COG3693 XynA Beta-1,4-xylanase 97.0 0.0053 1.2E-07 62.5 10.6 127 266-403 80-228 (345)
42 PF02055 Glyco_hydro_30: O-Gly 96.9 0.13 2.7E-06 56.7 21.5 167 237-407 110-313 (496)
43 COG3250 LacZ Beta-galactosidas 96.9 0.0069 1.5E-07 69.9 11.6 110 229-377 323-432 (808)
44 TIGR02103 pullul_strch alpha-1 96.6 0.57 1.2E-05 55.0 24.8 104 266-381 402-528 (898)
45 KOG3962 Predicted actin-bundli 96.1 0.026 5.7E-07 54.4 8.4 117 34-170 29-148 (246)
46 TIGR01515 branching_enzym alph 96.1 0.11 2.3E-06 58.9 14.8 146 230-378 160-349 (613)
47 PRK12313 glycogen branching en 96.0 0.13 2.9E-06 58.4 15.4 144 230-378 174-362 (633)
48 PLN02877 alpha-amylase/limit d 95.9 2.1 4.5E-05 50.6 24.4 27 266-292 464-493 (970)
49 PF14587 Glyco_hydr_30_2: O-Gl 95.8 0.18 3.8E-06 53.2 13.6 104 273-377 109-225 (384)
50 TIGR02402 trehalose_TreZ malto 95.7 0.29 6.3E-06 54.6 15.9 137 231-377 115-280 (542)
51 PLN02161 beta-amylase 95.6 0.18 3.9E-06 54.6 13.0 126 230-373 120-257 (531)
52 smart00642 Aamy Alpha-amylase 95.6 0.043 9.3E-07 51.5 7.6 60 230-289 22-91 (166)
53 TIGR02104 pulA_typeI pullulana 95.6 4 8.6E-05 46.3 24.6 60 231-291 168-255 (605)
54 PRK05402 glycogen branching en 95.5 0.26 5.7E-06 56.9 15.0 146 229-378 268-458 (726)
55 PLN02803 beta-amylase 95.5 0.18 4E-06 54.8 12.6 129 230-376 110-250 (548)
56 PLN02447 1,4-alpha-glucan-bran 95.4 0.48 1E-05 54.5 16.3 147 229-378 253-446 (758)
57 PRK10785 maltodextrin glucosid 95.3 0.57 1.2E-05 53.0 16.5 59 230-288 182-246 (598)
58 PLN02801 beta-amylase 95.2 0.21 4.5E-06 54.1 11.9 121 230-368 40-172 (517)
59 PF01373 Glyco_hydro_14: Glyco 94.8 0.15 3.2E-06 54.1 9.4 127 230-376 19-150 (402)
60 PLN00197 beta-amylase; Provisi 94.8 0.34 7.4E-06 53.0 12.2 129 230-376 130-270 (573)
61 PLN02960 alpha-amylase 94.7 0.98 2.1E-05 52.5 16.3 146 229-378 419-611 (897)
62 PLN02905 beta-amylase 94.7 0.35 7.7E-06 53.5 12.1 121 230-368 289-421 (702)
63 PLN02705 beta-amylase 94.6 0.44 9.4E-06 52.7 12.5 121 230-368 271-403 (681)
64 PF14200 RicinB_lectin_2: Rici 94.5 0.4 8.6E-06 41.0 9.9 63 65-127 14-80 (105)
65 COG5520 O-Glycosyl hydrolase [ 94.4 2.6 5.6E-05 43.9 16.7 187 202-407 41-247 (433)
66 TIGR02102 pullulan_Gpos pullul 94.2 1.3 2.9E-05 53.1 16.5 102 267-380 554-673 (1111)
67 KOG2233 Alpha-N-acetylglucosam 94.2 0.59 1.3E-05 50.2 12.0 149 230-378 81-282 (666)
68 COG1523 PulA Type II secretory 94.0 0.16 3.4E-06 57.9 8.0 68 226-293 199-293 (697)
69 COG5309 Exo-beta-1,3-glucanase 93.9 4.4 9.5E-05 40.7 16.8 209 230-511 66-279 (305)
70 PRK14705 glycogen branching en 93.9 1.4 3.1E-05 53.3 16.2 145 230-378 769-958 (1224)
71 PRK12568 glycogen branching en 93.9 1.6 3.4E-05 50.3 15.7 147 229-378 272-462 (730)
72 PF13200 DUF4015: Putative gly 93.7 7.9 0.00017 40.2 19.1 139 230-371 16-189 (316)
73 KOG2230 Predicted beta-mannosi 93.5 0.57 1.2E-05 51.2 10.7 151 230-410 360-526 (867)
74 PF00128 Alpha-amylase: Alpha 93.4 0.15 3.2E-06 51.4 6.0 58 231-288 8-72 (316)
75 PRK14706 glycogen branching en 93.0 3 6.6E-05 47.5 16.3 145 230-378 171-358 (639)
76 PLN00196 alpha-amylase; Provis 92.5 0.4 8.6E-06 51.9 8.0 63 230-292 47-119 (428)
77 COG0296 GlgB 1,4-alpha-glucan 92.5 1.6 3.5E-05 49.2 12.8 141 229-375 167-354 (628)
78 PF11790 Glyco_hydro_cc: Glyco 92.0 3.1 6.7E-05 41.3 13.1 134 321-504 55-201 (239)
79 PF02638 DUF187: Glycosyl hydr 91.8 3.9 8.5E-05 42.4 14.1 147 230-378 22-229 (311)
80 PF14871 GHL6: Hypothetical gl 91.8 2.6 5.6E-05 38.1 11.2 103 230-335 3-128 (132)
81 PF07468 Agglutinin: Agglutini 91.8 1.7 3.7E-05 39.9 9.9 101 69-170 8-123 (153)
82 PF14200 RicinB_lectin_2: Rici 91.5 1.4 3.1E-05 37.5 8.8 71 101-173 4-80 (105)
83 PF05089 NAGLU: Alpha-N-acetyl 91.1 0.54 1.2E-05 48.8 6.7 169 230-402 22-249 (333)
84 smart00791 Agglutinin Amaranth 91.0 3.6 7.7E-05 37.1 10.8 97 67-170 7-111 (139)
85 PLN02361 alpha-amylase 90.1 0.84 1.8E-05 48.9 7.4 59 230-288 32-96 (401)
86 PRK09441 cytoplasmic alpha-amy 89.8 0.79 1.7E-05 50.3 7.2 62 230-291 25-107 (479)
87 KOG0496 Beta-galactosidase [Ca 89.7 2.3 4.9E-05 47.7 10.4 108 230-345 52-176 (649)
88 TIGR02100 glgX_debranch glycog 89.6 0.67 1.4E-05 53.2 6.6 61 231-292 188-272 (688)
89 PRK09505 malS alpha-amylase; R 89.6 0.94 2E-05 51.8 7.7 58 231-288 234-312 (683)
90 TIGR02456 treS_nterm trehalose 89.5 0.9 1.9E-05 50.7 7.4 58 231-288 32-96 (539)
91 PRK10933 trehalose-6-phosphate 89.5 0.94 2E-05 50.7 7.6 57 231-288 37-101 (551)
92 PRK03705 glycogen debranching 89.2 0.85 1.8E-05 52.1 6.9 61 231-292 183-269 (658)
93 TIGR02403 trehalose_treC alpha 88.9 1.1 2.5E-05 49.9 7.7 59 230-288 30-95 (543)
94 PF00167 FGF: Fibroblast growt 88.4 9.4 0.0002 33.6 11.8 96 68-171 3-101 (122)
95 KOG3962 Predicted actin-bundli 87.9 0.64 1.4E-05 45.1 4.1 75 62-143 91-165 (246)
96 KOG0470 1,4-alpha-glucan branc 87.0 0.86 1.9E-05 51.5 5.0 59 228-288 256-331 (757)
97 cd02742 GH20_hexosaminidase Be 86.5 23 0.0005 36.4 15.1 137 230-369 19-184 (303)
98 PLN02784 alpha-amylase 86.1 3.6 7.8E-05 47.9 9.5 62 230-291 524-594 (894)
99 PRK14510 putative bifunctional 86.0 1.5 3.3E-05 53.5 6.9 64 230-293 190-275 (1221)
100 PF04601 DUF569: Protein of un 84.9 4.8 0.0001 36.8 7.9 64 108-173 6-69 (142)
101 PRK07379 coproporphyrinogen II 84.6 9.1 0.0002 41.0 11.4 122 228-373 113-248 (400)
102 PRK05628 coproporphyrinogen II 83.6 13 0.00029 39.3 12.1 123 227-373 105-241 (375)
103 TIGR02401 trehalose_TreY malto 83.5 3.3 7.2E-05 48.2 7.8 59 230-288 19-85 (825)
104 PRK08208 coproporphyrinogen II 83.3 11 0.00025 40.7 11.6 122 227-372 138-267 (430)
105 PRK05799 coproporphyrinogen II 83.2 14 0.00031 39.0 12.1 123 227-373 96-232 (374)
106 PRK05904 coproporphyrinogen II 83.2 15 0.00033 38.7 12.1 125 227-375 100-233 (353)
107 cd06564 GH20_DspB_LnbB-like Gl 82.3 25 0.00053 36.6 13.2 137 230-370 20-194 (326)
108 PF01120 Alpha_L_fucos: Alpha- 82.3 5.2 0.00011 42.1 8.2 135 229-375 93-242 (346)
109 PRK05660 HemN family oxidoredu 82.2 15 0.00032 39.1 11.8 123 227-373 104-236 (378)
110 PRK14511 maltooligosyl trehalo 82.0 4.1 9E-05 47.7 7.8 59 230-288 23-89 (879)
111 COG0366 AmyA Glycosidases [Car 81.7 2.6 5.6E-05 45.9 6.0 58 231-288 33-97 (505)
112 PRK06294 coproporphyrinogen II 81.3 20 0.00042 38.1 12.2 123 227-373 100-236 (370)
113 cd06565 GH20_GcnA-like Glycosy 81.2 53 0.0011 33.8 15.1 144 230-378 20-186 (301)
114 PRK13347 coproporphyrinogen II 80.9 15 0.00033 40.0 11.5 122 227-372 149-283 (453)
115 PRK08599 coproporphyrinogen II 80.7 18 0.00038 38.4 11.7 122 227-372 97-232 (377)
116 PF03662 Glyco_hydro_79n: Glyc 80.2 1.9 4.2E-05 44.7 4.0 28 266-293 107-134 (319)
117 COG0635 HemN Coproporphyrinoge 80.0 24 0.00052 38.2 12.5 122 227-372 134-268 (416)
118 PRK09058 coproporphyrinogen II 79.1 20 0.00044 39.0 11.7 122 228-373 161-297 (449)
119 PRK09057 coproporphyrinogen II 78.8 19 0.00041 38.3 11.2 122 227-372 101-235 (380)
120 TIGR00539 hemN_rel putative ox 78.4 27 0.00058 36.8 12.1 121 227-371 97-227 (360)
121 PRK09249 coproporphyrinogen II 77.4 26 0.00057 38.2 12.0 122 227-372 148-282 (453)
122 PLN03244 alpha-amylase; Provis 76.9 37 0.00081 39.5 13.1 113 265-378 438-586 (872)
123 cd06562 GH20_HexA_HexB-like Be 76.2 55 0.0012 34.4 13.6 59 230-288 21-90 (348)
124 PRK06582 coproporphyrinogen II 76.0 30 0.00065 37.0 11.8 123 227-373 108-243 (390)
125 PRK14507 putative bifunctional 75.0 7.8 0.00017 48.6 7.7 58 230-288 761-827 (1693)
126 PRK08446 coproporphyrinogen II 74.3 38 0.00082 35.6 11.9 122 227-373 95-224 (350)
127 TIGR01212 radical SAM protein, 72.4 47 0.001 34.2 11.8 126 226-374 119-257 (302)
128 COG3589 Uncharacterized conser 72.1 7.4 0.00016 40.4 5.6 52 230-289 19-70 (360)
129 COG0276 HemH Protoheme ferro-l 71.0 39 0.00084 35.2 10.6 142 221-381 97-268 (320)
130 cd06563 GH20_chitobiase-like T 70.9 1.3E+02 0.0028 31.7 15.0 141 230-370 21-219 (357)
131 TIGR00538 hemN oxygen-independ 70.3 24 0.00052 38.5 9.5 121 227-371 148-281 (455)
132 KOG0471 Alpha-amylase [Carbohy 69.7 7.5 0.00016 43.5 5.5 59 230-288 43-108 (545)
133 PRK09856 fructoselysine 3-epim 69.2 48 0.001 33.1 10.8 150 235-408 55-212 (275)
134 PF07468 Agglutinin: Agglutini 68.8 56 0.0012 30.2 9.9 115 34-149 18-152 (153)
135 PRK08207 coproporphyrinogen II 68.4 52 0.0011 36.4 11.6 123 227-373 266-400 (488)
136 cd06522 GH25_AtlA-like AtlA is 68.0 88 0.0019 29.8 11.9 123 223-378 8-131 (192)
137 cd06568 GH20_SpHex_like A subg 66.2 72 0.0016 33.3 11.7 143 230-378 21-196 (329)
138 PRK04302 triosephosphate isome 66.0 1.1E+02 0.0023 29.9 12.3 109 229-381 74-183 (223)
139 smart00791 Agglutinin Amaranth 66.0 58 0.0013 29.5 9.2 80 64-147 50-136 (139)
140 TIGR02455 TreS_stutzeri trehal 65.9 18 0.00039 41.0 7.4 60 230-289 77-151 (688)
141 KOG2566 Beta-glucocerebrosidas 64.6 2E+02 0.0044 30.7 16.5 126 280-409 192-340 (518)
142 PF01261 AP_endonuc_2: Xylose 63.2 61 0.0013 30.2 9.8 128 231-377 31-164 (213)
143 cd06570 GH20_chitobiase-like_1 62.5 96 0.0021 32.1 11.7 58 230-290 21-90 (311)
144 COG3623 SgaU Putative L-xylulo 62.4 19 0.0004 35.7 5.9 123 263-409 91-216 (287)
145 cd00058 FGF Acidic and basic f 62.2 1.1E+02 0.0025 27.0 12.2 90 76-171 8-99 (123)
146 PRK08898 coproporphyrinogen II 61.7 79 0.0017 33.8 11.3 123 227-373 119-250 (394)
147 KOG4518 Hydroxypyruvate isomer 61.4 1.1E+02 0.0023 29.8 10.5 127 233-376 22-177 (264)
148 PF01261 AP_endonuc_2: Xylose 60.7 8.8 0.00019 36.1 3.5 63 230-292 74-136 (213)
149 PF12891 Glyco_hydro_44: Glyco 59.4 21 0.00046 35.5 5.8 62 319-380 107-181 (239)
150 PRK13209 L-xylulose 5-phosphat 59.3 33 0.00071 34.4 7.5 59 230-290 102-160 (283)
151 cd07948 DRE_TIM_HCS Saccharomy 58.9 11 0.00023 38.2 3.8 62 228-290 72-134 (262)
152 PF05913 DUF871: Bacterial pro 58.8 18 0.0004 38.2 5.7 53 230-290 17-69 (357)
153 TIGR00542 hxl6Piso_put hexulos 58.2 1.1E+02 0.0023 30.8 11.0 147 235-408 60-213 (279)
154 PF00167 FGF: Fibroblast growt 57.7 73 0.0016 27.9 8.6 63 112-179 3-66 (122)
155 cd02875 GH18_chitobiase Chitob 57.5 1.1E+02 0.0024 32.3 11.3 88 271-376 67-156 (358)
156 cd00311 TIM Triosephosphate is 56.5 1.9E+02 0.0041 28.8 12.2 131 231-391 75-219 (242)
157 PRK14565 triosephosphate isome 56.0 1.4E+02 0.0031 29.7 11.1 132 230-391 75-209 (237)
158 PF04055 Radical_SAM: Radical 55.3 18 0.00039 32.1 4.4 63 228-293 88-153 (166)
159 cd02871 GH18_chitinase_D-like 54.9 1.5E+02 0.0032 30.5 11.6 95 267-377 59-154 (312)
160 PLN02449 ferrochelatase 54.1 1.9E+02 0.004 32.0 12.5 143 222-382 187-364 (485)
161 cd06419 GH25_muramidase_2 Unch 53.4 1.1E+02 0.0025 29.1 9.7 120 223-377 15-134 (190)
162 TIGR01210 conserved hypothetic 53.1 16 0.00034 37.9 4.1 63 226-289 113-176 (313)
163 PTZ00333 triosephosphate isome 52.3 1.1E+02 0.0024 30.8 9.8 52 230-289 79-130 (255)
164 PF07555 NAGidase: beta-N-acet 52.0 1.5E+02 0.0032 30.8 10.9 82 230-331 18-103 (306)
165 TIGR00433 bioB biotin syntheta 51.6 1.5E+02 0.0032 29.9 10.9 57 227-287 120-177 (296)
166 PF10566 Glyco_hydro_97: Glyco 51.6 32 0.00069 35.0 5.8 50 230-291 109-158 (273)
167 TIGR01531 glyc_debranch glycog 51.1 37 0.00081 41.9 7.1 60 230-293 135-213 (1464)
168 cd00058 FGF Acidic and basic f 51.0 1.1E+02 0.0024 27.1 8.5 71 64-140 38-112 (123)
169 smart00442 FGF Acidic and basi 50.8 1.5E+02 0.0033 26.3 9.5 71 66-142 44-118 (126)
170 cd06593 GH31_xylosidase_YicI Y 50.3 2.9E+02 0.0064 28.1 13.0 145 231-377 28-205 (308)
171 TIGR01211 ELP3 histone acetylt 50.2 18 0.00039 40.3 4.1 62 225-289 201-263 (522)
172 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.2 70 0.0015 32.4 8.2 49 228-290 92-140 (275)
173 PRK13210 putative L-xylulose 5 49.8 28 0.0006 34.9 5.2 59 230-290 97-155 (284)
174 PF14701 hDGE_amylase: glucano 49.0 1.2E+02 0.0027 32.8 10.0 60 230-289 25-98 (423)
175 TIGR00542 hxl6Piso_put hexulos 48.4 33 0.00073 34.4 5.5 59 230-290 97-155 (279)
176 PRK05692 hydroxymethylglutaryl 48.3 20 0.00043 36.7 3.8 61 229-289 81-141 (287)
177 PRK13210 putative L-xylulose 5 47.8 1.9E+02 0.0042 28.6 11.0 93 235-342 60-155 (284)
178 cd07939 DRE_TIM_NifV Streptomy 47.3 19 0.0004 36.1 3.4 60 229-288 71-130 (259)
179 cd03174 DRE_TIM_metallolyase D 47.1 20 0.00043 35.6 3.6 60 230-289 77-136 (265)
180 PRK09936 hypothetical protein; 47.1 1E+02 0.0022 31.6 8.6 58 230-294 41-98 (296)
181 COG3280 TreY Maltooligosyl tre 47.1 29 0.00062 39.9 5.0 57 230-288 22-88 (889)
182 cd07938 DRE_TIM_HMGL 3-hydroxy 46.8 22 0.00048 36.1 3.9 62 229-290 75-136 (274)
183 KOG0564 5,10-methylenetetrahyd 46.5 91 0.002 34.3 8.4 98 266-377 90-215 (590)
184 TIGR01305 GMP_reduct_1 guanosi 46.3 58 0.0013 34.1 6.8 61 227-287 158-218 (343)
185 cd02874 GH18_CFLE_spore_hydrol 46.2 94 0.002 31.8 8.5 89 271-369 48-137 (313)
186 PRK09997 hydroxypyruvate isome 45.6 34 0.00075 33.9 5.0 59 230-290 88-146 (258)
187 PRK13209 L-xylulose 5-phosphat 45.4 2.3E+02 0.0051 28.2 11.2 118 265-407 96-217 (283)
188 COG1649 Uncharacterized protei 45.3 3.5E+02 0.0077 29.3 12.7 145 230-378 67-272 (418)
189 PRK04161 tagatose 1,6-diphosph 45.1 28 0.00062 36.1 4.3 62 228-293 108-169 (329)
190 TIGR03471 HpnJ hopanoid biosyn 45.0 65 0.0014 35.2 7.5 62 228-292 285-348 (472)
191 PLN02746 hydroxymethylglutaryl 44.9 23 0.00049 37.4 3.7 61 229-289 123-183 (347)
192 cd06545 GH18_3CO4_chitinase Th 44.9 3.2E+02 0.0069 27.0 11.9 85 268-368 46-131 (253)
193 PRK09997 hydroxypyruvate isome 44.8 3.2E+02 0.0069 26.9 13.0 157 229-406 41-207 (258)
194 cd07945 DRE_TIM_CMS Leptospira 44.5 21 0.00046 36.4 3.3 62 229-290 76-137 (280)
195 TIGR03551 F420_cofH 7,8-dideme 44.4 2.6E+02 0.0055 29.2 11.6 179 228-425 139-329 (343)
196 COG1441 MenC O-succinylbenzoat 44.3 24 0.00053 34.8 3.5 52 223-287 212-263 (321)
197 PF09270 BTD: Beta-trefoil DNA 43.9 37 0.00079 31.6 4.4 30 76-108 22-54 (158)
198 TIGR02660 nifV_homocitr homoci 43.9 47 0.001 35.2 5.9 60 229-288 74-133 (365)
199 COG3623 SgaU Putative L-xylulo 43.8 2.9E+02 0.0064 27.6 10.7 116 230-368 21-144 (287)
200 TIGR02090 LEU1_arch isopropylm 42.8 24 0.00053 37.3 3.6 62 228-289 72-133 (363)
201 PRK12399 tagatose 1,6-diphosph 42.3 33 0.0007 35.7 4.2 62 228-293 106-167 (324)
202 PF07488 Glyco_hydro_67M: Glyc 42.3 85 0.0018 32.4 7.1 123 230-370 60-189 (328)
203 cd07944 DRE_TIM_HOA_like 4-hyd 42.2 61 0.0013 32.7 6.2 50 228-291 83-132 (266)
204 TIGR03234 OH-pyruv-isom hydrox 41.7 38 0.00083 33.4 4.7 60 230-291 87-146 (254)
205 cd00419 Ferrochelatase_C Ferro 41.3 1.2E+02 0.0025 27.4 7.3 84 280-381 17-102 (135)
206 PRK14567 triosephosphate isome 41.2 3.7E+02 0.008 27.1 11.5 51 231-289 76-126 (253)
207 KOG2499 Beta-N-acetylhexosamin 40.8 3.1E+02 0.0067 30.3 11.3 56 229-289 200-271 (542)
208 cd06413 GH25_muramidase_1 Unch 40.0 2.3E+02 0.005 26.7 9.6 117 231-377 15-131 (191)
209 cd06547 GH85_ENGase Endo-beta- 39.8 1.3E+02 0.0028 31.6 8.4 97 272-376 50-146 (339)
210 TIGR01232 lacD tagatose 1,6-di 39.5 35 0.00075 35.5 3.9 60 230-293 109-168 (325)
211 COG0641 AslB Arylsulfatase reg 38.4 5.2E+02 0.011 27.6 13.8 118 228-370 102-228 (378)
212 PRK11858 aksA trans-homoaconit 38.0 34 0.00074 36.4 3.8 60 229-288 77-136 (378)
213 smart00812 Alpha_L_fucos Alpha 37.8 2.3E+02 0.005 30.3 10.0 141 229-381 83-236 (384)
214 PRK06256 biotin synthase; Vali 37.5 1.5E+02 0.0032 30.8 8.4 127 227-380 149-279 (336)
215 cd00019 AP2Ec AP endonuclease 37.1 39 0.00084 33.9 3.9 114 230-365 88-204 (279)
216 PRK08195 4-hyroxy-2-oxovalerat 36.3 78 0.0017 33.2 6.1 49 229-291 90-138 (337)
217 COG2108 Uncharacterized conser 36.1 93 0.002 32.4 6.3 101 227-368 121-222 (353)
218 PRK09856 fructoselysine 3-epim 35.9 55 0.0012 32.6 4.8 59 230-290 93-151 (275)
219 smart00442 FGF Acidic and basi 35.8 3.1E+02 0.0068 24.3 12.8 74 67-147 4-78 (126)
220 TIGR02631 xylA_Arthro xylose i 35.8 4.6E+02 0.0099 28.0 11.9 99 265-377 112-215 (382)
221 cd07947 DRE_TIM_Re_CS Clostrid 35.8 38 0.00081 34.6 3.6 61 228-288 75-135 (279)
222 TIGR02026 BchE magnesium-proto 35.5 92 0.002 34.4 6.8 61 229-292 286-348 (497)
223 PF10566 Glyco_hydro_97: Glyco 35.4 1E+02 0.0022 31.4 6.5 121 230-378 35-157 (273)
224 cd07941 DRE_TIM_LeuA3 Desulfob 34.9 43 0.00094 33.9 3.8 58 229-287 80-138 (273)
225 TIGR03234 OH-pyruv-isom hydrox 34.2 4.5E+02 0.0098 25.6 12.7 130 230-377 41-177 (254)
226 PF00728 Glyco_hydro_20: Glyco 34.2 49 0.0011 34.3 4.3 59 230-288 21-93 (351)
227 PRK09240 thiH thiamine biosynt 34.1 1.7E+02 0.0036 31.1 8.3 133 227-379 160-299 (371)
228 TIGR03217 4OH_2_O_val_ald 4-hy 34.0 93 0.002 32.6 6.2 48 229-290 89-136 (333)
229 PF02879 PGM_PMM_II: Phosphogl 32.9 79 0.0017 26.6 4.6 83 266-377 3-91 (104)
230 PF04343 DUF488: Protein of un 32.5 68 0.0015 28.1 4.3 27 270-296 2-28 (122)
231 PRK07535 methyltetrahydrofolat 32.1 4.2E+02 0.0092 26.6 10.4 93 230-345 106-201 (261)
232 TIGR02171 Fb_sc_TIGR02171 Fibr 32.0 1.5E+02 0.0032 35.2 7.7 32 264-295 804-836 (912)
233 PF03659 Glyco_hydro_71: Glyco 31.7 2.7E+02 0.0058 29.9 9.3 49 230-289 20-68 (386)
234 cd06589 GH31 The enzymes of gl 31.6 3.8E+02 0.0082 26.7 10.1 30 261-290 59-88 (265)
235 PRK12858 tagatose 1,6-diphosph 31.2 73 0.0016 33.5 4.8 57 232-292 111-167 (340)
236 cd06414 GH25_LytC-like The Lyt 31.2 4.5E+02 0.0098 24.7 10.7 119 232-377 14-133 (191)
237 cd00842 MPP_ASMase acid sphing 31.0 1.5E+02 0.0033 29.9 7.2 77 218-294 138-226 (296)
238 COG5016 Pyruvate/oxaloacetate 30.8 82 0.0018 33.8 5.0 53 222-288 93-145 (472)
239 COG1501 Alpha-glucosidases, fa 30.6 6.1E+02 0.013 29.9 12.6 150 226-377 275-462 (772)
240 KOG1066 Glucosidase II catalyt 30.2 1.1E+02 0.0025 35.1 6.2 122 223-346 365-513 (915)
241 cd00019 AP2Ec AP endonuclease 30.1 3.5E+02 0.0076 26.9 9.6 94 264-377 81-176 (279)
242 KOG4589 Cell division protein 30.1 96 0.0021 30.0 4.9 63 283-373 71-136 (232)
243 cd06601 GH31_lyase_GLase GLase 30.1 2.2E+02 0.0047 29.8 8.2 108 229-345 22-135 (332)
244 PRK00865 glutamate racemase; P 30.1 2.2E+02 0.0047 28.5 8.0 59 319-378 18-76 (261)
245 cd06603 GH31_GANC_GANAB_alpha 30.0 6.5E+02 0.014 26.1 11.8 58 231-291 28-87 (339)
246 PRK05096 guanosine 5'-monophos 29.2 1.6E+02 0.0035 31.0 6.8 60 228-287 160-219 (346)
247 PF05270 AbfB: Alpha-L-arabino 29.0 4.3E+02 0.0093 24.2 8.9 78 100-179 39-124 (142)
248 PRK09389 (R)-citramalate synth 28.9 57 0.0012 36.1 3.8 61 230-290 76-136 (488)
249 smart00518 AP2Ec AP endonuclea 28.9 3.4E+02 0.0073 26.8 9.2 63 264-342 80-142 (273)
250 cd07943 DRE_TIM_HOA 4-hydroxy- 28.4 1.4E+02 0.0031 29.8 6.4 47 229-289 87-133 (263)
251 PRK13397 3-deoxy-7-phosphohept 28.3 2E+02 0.0043 29.0 7.1 57 231-291 33-89 (250)
252 PRK05301 pyrroloquinoline quin 28.3 83 0.0018 33.2 4.8 59 227-288 101-161 (378)
253 cd00161 RICIN Ricin-type beta- 28.2 3.4E+02 0.0073 22.3 9.7 73 75-150 9-84 (124)
254 PF01041 DegT_DnrJ_EryC1: DegT 28.2 1.1E+02 0.0025 31.9 5.8 53 228-294 101-153 (363)
255 PRK00278 trpC indole-3-glycero 28.0 1.6E+02 0.0036 29.5 6.7 48 230-291 123-170 (260)
256 PF13378 MR_MLE_C: Enolase C-t 27.8 1.7E+02 0.0037 24.8 5.9 47 227-286 4-51 (111)
257 PRK13398 3-deoxy-7-phosphohept 27.6 1.9E+02 0.0041 29.3 7.0 57 230-291 44-101 (266)
258 TIGR02109 PQQ_syn_pqqE coenzym 27.4 79 0.0017 33.0 4.4 59 227-288 92-152 (358)
259 PRK07807 inosine 5-monophospha 27.1 1.6E+02 0.0034 32.6 6.7 61 227-287 276-336 (479)
260 PF04283 CheF-arch: Chemotaxis 26.8 1.2E+02 0.0026 29.8 5.3 52 61-126 106-157 (221)
261 TIGR01302 IMP_dehydrog inosine 26.8 1.9E+02 0.0041 31.6 7.3 62 226-287 272-333 (450)
262 PF14054 DUF4249: Domain of un 26.7 2.2E+02 0.0048 28.5 7.5 76 40-125 25-117 (298)
263 cd02932 OYE_YqiM_FMN Old yello 26.5 7.3E+02 0.016 25.6 12.9 30 262-291 71-100 (336)
264 cd06602 GH31_MGAM_SI_GAA This 26.5 7.5E+02 0.016 25.7 11.7 141 231-377 28-200 (339)
265 PRK10673 acyl-CoA esterase; Pr 26.2 1.6E+02 0.0035 28.2 6.2 58 321-382 31-92 (255)
266 PF01183 Glyco_hydro_25: Glyco 26.2 5.3E+02 0.011 23.9 11.3 118 231-377 10-127 (181)
267 cd06591 GH31_xylosidase_XylS X 26.0 6.3E+02 0.014 26.0 10.8 30 262-291 60-89 (319)
268 TIGR02017 hutG_amidohyd N-form 25.9 2.4E+02 0.0052 28.5 7.4 27 267-293 124-151 (263)
269 PF00682 HMGL-like: HMGL-like 25.3 1.1E+02 0.0023 29.9 4.7 61 229-289 65-129 (237)
270 COG1099 Predicted metal-depend 25.3 2.4E+02 0.0052 28.0 6.8 118 229-378 13-134 (254)
271 KOG3770 Acid sphingomyelinase 25.2 5.2E+02 0.011 29.2 10.2 109 218-339 284-407 (577)
272 PF04273 DUF442: Putative phos 25.1 52 0.0011 28.6 2.1 46 228-284 15-60 (110)
273 PRK00979 tetrahydromethanopter 25.1 4.5E+02 0.0098 27.3 9.2 86 230-345 136-231 (308)
274 PRK15492 triosephosphate isome 25.1 6.9E+02 0.015 25.2 10.5 52 230-289 84-135 (260)
275 KOG1643 Triosephosphate isomer 24.3 6.8E+02 0.015 24.5 11.7 142 229-399 75-230 (247)
276 PLN02389 biotin synthase 24.3 5.3E+02 0.011 27.5 10.0 152 227-405 175-332 (379)
277 smart00729 Elp3 Elongator prot 24.2 1.1E+02 0.0024 28.2 4.4 58 227-287 97-156 (216)
278 TIGR03128 RuMP_HxlA 3-hexulose 24.1 2E+02 0.0044 27.3 6.3 44 232-290 68-111 (206)
279 PRK09613 thiH thiamine biosynt 24.1 3.3E+02 0.0071 30.0 8.5 133 228-379 178-318 (469)
280 TIGR02666 moaA molybdenum cofa 24.0 2.2E+02 0.0049 29.3 7.1 60 230-292 102-164 (334)
281 cd02877 GH18_hevamine_XipI_cla 23.8 7.3E+02 0.016 25.2 10.5 26 267-292 58-83 (280)
282 PF03992 ABM: Antibiotic biosy 23.6 2.1E+02 0.0045 21.8 5.3 34 313-346 13-47 (78)
283 cd07940 DRE_TIM_IPMS 2-isoprop 23.3 75 0.0016 31.9 3.2 59 229-287 71-133 (268)
284 TIGR03849 arch_ComA phosphosul 22.4 2.2E+02 0.0047 28.5 6.1 49 230-290 74-122 (237)
285 PRK12677 xylose isomerase; Pro 22.1 6.8E+02 0.015 26.7 10.3 90 266-369 112-204 (384)
286 PF02310 B12-binding: B12 bind 22.0 1.5E+02 0.0034 25.1 4.6 50 331-389 50-99 (121)
287 COG0134 TrpC Indole-3-glycerol 22.0 76 0.0017 31.9 2.8 49 228-290 117-165 (254)
288 cd06569 GH20_Sm-chitobiase-lik 21.8 2.2E+02 0.0048 31.1 6.6 23 266-288 95-117 (445)
289 TIGR00109 hemH ferrochelatase. 21.7 5.5E+02 0.012 26.6 9.3 141 222-381 100-271 (322)
290 PRK12331 oxaloacetate decarbox 21.7 1.8E+02 0.0039 31.8 5.9 47 228-288 97-143 (448)
291 PF00652 Ricin_B_lectin: Ricin 21.6 4.7E+02 0.01 21.7 9.3 97 66-172 3-104 (124)
292 cd03751 proteasome_alpha_type_ 21.5 89 0.0019 30.3 3.2 52 184-235 136-187 (212)
293 PF01791 DeoC: DeoC/LacD famil 21.4 61 0.0013 31.8 2.1 53 230-287 79-131 (236)
294 TIGR02351 thiH thiazole biosyn 21.4 3.9E+02 0.0084 28.2 8.3 132 227-379 159-298 (366)
295 COG1306 Uncharacterized conser 21.3 1.4E+02 0.0029 30.9 4.4 58 230-288 80-144 (400)
296 TIGR01303 IMP_DH_rel_1 IMP deh 21.2 2.9E+02 0.0063 30.5 7.4 61 227-287 274-334 (475)
297 TIGR02867 spore_II_P stage II 21.1 2.2E+02 0.0047 27.5 5.7 54 230-291 37-92 (196)
298 PLN02429 triosephosphate isome 20.7 9.7E+02 0.021 25.0 12.9 52 230-289 137-188 (315)
299 cd04502 SGNH_hydrolase_like_7 20.6 4.5E+02 0.0098 23.6 7.7 57 317-376 37-94 (171)
300 cd02872 GH18_chitolectin_chito 20.4 8.2E+02 0.018 25.4 10.5 99 268-376 56-158 (362)
301 PF07071 DUF1341: Protein of u 20.3 2.6E+02 0.0056 27.3 5.8 42 230-284 138-180 (218)
302 TIGR03235 DNA_S_dndA cysteine 20.2 1.4E+02 0.003 30.9 4.5 26 265-290 152-177 (353)
303 PRK05664 threonine-phosphate d 20.2 2.4E+02 0.0052 28.9 6.3 24 266-289 142-165 (330)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=2.6e-32 Score=274.81 Aligned_cols=253 Identities=29% Similarity=0.432 Sum_probs=172.4
Q ss_pred ccCCC-CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCC
Q 009475 223 HWDSY-ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (534)
Q Consensus 223 hw~~~-ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~s 301 (534)
||.+. +++++|+.|+++|+|+|||||.|..+.++.++..+.+..+++||++|++|+++||+||||+|..|+..++.+
T Consensus 16 ~w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~-- 93 (281)
T PF00150_consen 16 HWYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGD-- 93 (281)
T ss_dssp TTSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTS--
T ss_pred ccCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc--
Confidence 35433 889999999999999999999986665555544567789999999999999999999999999876522111
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCC-------hHHHHHHHHHHHHHHHhcCCceE
Q 009475 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
.... ....+.+.++|+.||+||++++.+++|||+|||...... .+.+.+++++++++||+++|+++
T Consensus 94 ------~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 94 ------GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ------ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 1111 345667888999999999999999999999999974322 37889999999999999999999
Q ss_pred EEEeC-CCCCCChhh-hhccc-CCCceEEEEEeecccCCCCCCCC-chhhhHHHHHhhhhhhhhhhhccCCCeEEEeecc
Q 009475 374 VIMSN-RLGPADHKE-LLSFA-SGLSRVVIDVHYYNLFSNNFNGL-NVQQNIDYVNNQRASDLGAVTTSNGPLTFVGKSV 449 (534)
Q Consensus 374 Iiv~~-~~~~~~~~~-~~~~~-~~~~nvv~d~H~Y~~f~~~~~~~-~~~~~i~~i~~~~~~~l~~~~~~~gp~~~vgEws 449 (534)
|++++ .|. .+... ....+ ....+++|++|.|.++....... ........+.......+..... .+.+++
T Consensus 168 i~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~----- 240 (281)
T PF00150_consen 168 IIVGGGGWG-ADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVV----- 240 (281)
T ss_dssp EEEEEHHHH-TBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEE-----
T ss_pred eecCCCccc-cccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEE-----
Confidence 99975 343 23222 22333 24789999999999875211111 1111111221111111222222 233445
Q ss_pred cchhhhhhhhhhhhhhcccccccccccccccCCCcccHHHHHHHHHHHHHHHhcCCCcEEEEccccCC
Q 009475 450 TSALICKRCTQIRIRKRNLWLNFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCEA 517 (534)
Q Consensus 450 ~a~tdc~~~~~~~~~~~~~~~~~vGEws~~~~~~~a~~~~~~~~~~aq~~~~e~~~~GW~fWt~K~~~ 517 (534)
+|||+....- .. ....+..+.++.+++.++||+||+||.++
T Consensus 241 -----------------------~gE~G~~~~~-~~---~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 241 -----------------------VGEFGWSNND-GN---GSTDYADAWLDYLEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp -----------------------EEEEESSTTT-SC---HHHHHHHHHHHHHHHTTCEEEECEESSSS
T ss_pred -----------------------EeCcCCcCCC-CC---cCHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 6777664211 11 23334444478888899999999999753
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5.6e-28 Score=257.12 Aligned_cols=303 Identities=29% Similarity=0.472 Sum_probs=206.6
Q ss_pred ccceeeecccCCCcchhhhhhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCC-CCCCCC--chHHHHHHHHHHHH
Q 009475 202 RGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVG--GSSKVLDNAFDWAE 278 (534)
Q Consensus 202 ~~E~~~~~~~G~~~a~~~~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~-~~~~~~--~~l~~ld~~v~~a~ 278 (534)
.++...+.-+|...+...++.||.+++++++|..|+++|||+||||++||.+ .+.. ..|+.. ..+.+|+++|++|+
T Consensus 48 ~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~ 126 (407)
T COG2730 48 VGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAK 126 (407)
T ss_pred ecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHH
Confidence 3444445556777788899999999999999999999999999999999986 3322 245543 57779999999999
Q ss_pred HCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHH
Q 009475 279 KYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYY 358 (534)
Q Consensus 279 ~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~ 358 (534)
++||+|+||+|.+||++++.++++....... ...+.+++++.|++||.||++.+.|++||++|||+. -...+.|....
T Consensus 127 ~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~~~ 204 (407)
T COG2730 127 KLGIYVLIDLHGYPGGNNGHEHSGYTSDYKE-ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNGGD 204 (407)
T ss_pred hcCeeEEEEecccCCCCCCcCcccccccccc-cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccccch
Confidence 9999999999999999999999986644332 467789999999999999999999999999999995 12234455555
Q ss_pred HHHHHHHH-hcCCce---EEEEeCC-CCC---CChhhhhc-----------ccCCCceEEEEEeecccCCCCCCCCchhh
Q 009475 359 KAGYDAVR-KYTSTA---YVIMSNR-LGP---ADHKELLS-----------FASGLSRVVIDVHYYNLFSNNFNGLNVQQ 419 (534)
Q Consensus 359 ~~~~~aIR-~~~p~~---~Iiv~~~-~~~---~~~~~~~~-----------~~~~~~nvv~d~H~Y~~f~~~~~~~~~~~ 419 (534)
..+++.|| +....+ +|.+++. +.. .....+.. .+..++++....|.|.|+...
T Consensus 205 ~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------- 276 (407)
T COG2730 205 DEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYG-------- 276 (407)
T ss_pred HHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeec--------
Confidence 67777775 444444 3433321 111 00000000 011111233444444443210
Q ss_pred hHHHHHhhhhhhhhhhhccCCCeEEEeecccchhhhhhhhhh---hhhhcccccccccccccccCC-----CcccHHHHH
Q 009475 420 NIDYVNNQRASDLGAVTTSNGPLTFVGKSVTSALICKRCTQI---RIRKRNLWLNFVGEWTCEWNV-----KDASKQDYQ 491 (534)
Q Consensus 420 ~i~~i~~~~~~~l~~~~~~~gp~~~vgEws~a~tdc~~~~~~---~~~~~~~~~~~vGEws~~~~~-----~~a~~~~~~ 491 (534)
...+ .... ....+|++.+.++|+..... ..+ ..+.+..+|||+...+. ....++..+
T Consensus 277 ---------~~~l----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~Ge~g~~~~~~~~~~~~~~~~~~~ 341 (407)
T COG2730 277 ---------DDVL----NGGS-WTVGGEFDLAETDCAIWLNYVGHGAR-KNGYPTVIGEFGGNYNANNPNPQDERKDNVK 341 (407)
T ss_pred ---------chhh----cCCC-CCccCCcccccccceeeecceeeccc-ccceeeeeccccCccccCCCCccchhhHHHH
Confidence 0000 0001 12226778888888753332 112 34456779999876631 134567789
Q ss_pred HHHHHHHHHHhcCCCcEEEEccccCC-CCCChhHHHHCCCc
Q 009475 492 RFANAQLDVYGRATFGWAYWAHKCEA-NHWSLKWMIENGYI 531 (534)
Q Consensus 492 ~~~~aq~~~~e~~~~GW~fWt~K~~~-~~Ws~~~~v~~g~i 531 (534)
.+++.+.+++.. .++|++|+++.+. ..|+++.....+..
T Consensus 342 ~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 381 (407)
T COG2730 342 VYLENQLDVFDT-TTYWINNPWSGGNDTGYDIEDDINLGLF 381 (407)
T ss_pred HHhhhhhhhccc-eeEEEeecccCCCCCccchhhcchhhcc
Confidence 999999999997 8899999999984 78888886666544
No 3
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.74 E-value=3.3e-17 Score=145.08 Aligned_cols=109 Identities=28% Similarity=0.370 Sum_probs=97.5
Q ss_pred ceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEeeCCcEEEeecCCCCceEEEeecCCCCCce
Q 009475 66 TQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSET 145 (534)
Q Consensus 66 ~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~Et 145 (534)
-||+|||. +|+|||++.+| ..|.|||+.+++||+|+|.+.++++++||++||+||+++.. | .|.|+++ ++++|.
T Consensus 2 p~v~Lrs~-~gkyl~~~~~g-~~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~~--g-~l~~~~~-~~~~e~ 75 (119)
T cd00257 2 PQVVLRSV-NGRYLSAEAGG-DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADSD--G-GVQLEGH-PNADCR 75 (119)
T ss_pred cEEEEEEc-CCCEEEEeccC-CEEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEECC--C-CEEecCC-CCCCcE
Confidence 48999998 99999999988 58999999999999999999999999999999999999864 3 5899998 999999
Q ss_pred EEEEEeCCCCceEEEEecCCceEEecccceeecCCCC
Q 009475 146 FQIVRKDGDSSRVRLSASNGMFIQAISETRLTADYGS 182 (534)
Q Consensus 146 F~ivr~~~~~~~v~i~~~nG~~Lq~~g~~~v~ad~~~ 182 (534)
|++...+++ .+.+++.||+||.++.+..+.++...
T Consensus 76 F~~e~~~~g--~~al~~~~G~yl~~~~~g~l~~~~~~ 110 (119)
T cd00257 76 FTLEFHGDG--KWALRAENGRYLGGDGSGTLKASSET 110 (119)
T ss_pred EEEEECCCC--eEEEEcCCCCEEeecCCCeEEEecCC
Confidence 999987655 58999999999999877777777654
No 4
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.46 E-value=4.9e-13 Score=117.11 Aligned_cols=100 Identities=33% Similarity=0.466 Sum_probs=87.8
Q ss_pred eeEEEeecCCCceEEeccCCCCCcceEEEEEecC-ceEEEEeeCCcEEEeecCCCCceEEEeecCCCCCceEEEEEeCCC
Q 009475 76 QKYIAAESGGGTIVVANRTSASGWETFRLWRVNE-TFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGD 154 (534)
Q Consensus 76 ~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~-~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~EtF~ivr~~~~ 154 (534)
++|+++|+.|+. |.|||...+.||+|+|+..++ ..++||++||+|++++.. +.|+|+++++++++.|+|+..
T Consensus 2 ~~~~~~~k~~~~-l~an~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~~---G~v~~~~~~~~~~~~F~i~~~--- 74 (111)
T PF06268_consen 2 NGYLVSEKFGAH-LNANRASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDSD---GSVVADSETPGPDEFFEIEWH--- 74 (111)
T ss_dssp TEEEEETTCTCB-EEEEESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEETT---SEEEEEESSSSGGGCBEEEEE---
T ss_pred CcEEEEEEcCCE-EECChhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcCC---CeEEecCCCCCCCcEEEEEEC---
Confidence 589999998655 899999999999999997765 556899999999999864 359999999999999999999
Q ss_pred CceEEEEecCCceEEecccceeecCCCC
Q 009475 155 SSRVRLSASNGMFIQAISETRLTADYGS 182 (534)
Q Consensus 155 ~~~v~i~~~nG~~Lq~~g~~~v~ad~~~ 182 (534)
++.+.++++||+||.+.++..+.|+...
T Consensus 75 ~~~~~~~~~nGkYl~~~~~g~l~a~~~~ 102 (111)
T PF06268_consen 75 GGKVALRASNGKYLSAGPNGQLKANATS 102 (111)
T ss_dssp TTEEEEECTTSCEEEEETTTEEEEEESS
T ss_pred CCEEEEECCCCCEEeeCCCCeEEEcCCC
Confidence 3468899999999999998898887665
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.34 E-value=8.3e-11 Score=121.27 Aligned_cols=239 Identities=21% Similarity=0.311 Sum_probs=132.4
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC-----CCCCCCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA-----APGSQNGNEHSAT 303 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~-----~pG~qng~~~sg~ 303 (534)
.++-|+.||+.|+|.|||-+ | .+|..+. -..++...++.+.|+++||+|+||+|- .||.|.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv--w--v~P~~~g---~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~------- 91 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV--W--VNPYDGG---YNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN------- 91 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-TTTT---TTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B-------
T ss_pred CCCHHHHHHhcCCCeEEEEe--c--cCCcccc---cCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-------
Confidence 46789999999999999976 3 3443311 136888888999999999999999994 354442
Q ss_pred CCCCCCCCh----hhHHHHHHHHHHHHHHhcCCC-eEEEEEeccCCC-------CCCCChHHHHHHHHHHHHHHHhcCCc
Q 009475 304 RDGFQEWGD----SNVADTVAVIDFLAARYANRP-SLAAIELINEPL-------APGVALDTLKSYYKAGYDAVRKYTST 371 (534)
Q Consensus 304 ~~g~~~W~~----~~~~~~~~~w~~lA~ryk~~~-~vlg~eL~NEP~-------~~~~~~~~~~~~~~~~~~aIR~~~p~ 371 (534)
-...|.. .-.+...++-+.+.+.+++.. ..-.+++-||-. ......+.+.++...++++||+.+|+
T Consensus 92 --~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~ 169 (332)
T PF07745_consen 92 --KPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN 169 (332)
T ss_dssp ----TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST
T ss_pred --CCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC
Confidence 2345761 122233344444545555432 223368899944 33455778899999999999999999
Q ss_pred eEEEEeCCCCCCCh---hhhhcc--cCCCceEEEEEeecccCCCCCCCCchhhhHHHHHhhhhhhhhhhhccCCCeEEEe
Q 009475 372 AYVIMSNRLGPADH---KELLSF--ASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVG 446 (534)
Q Consensus 372 ~~Iiv~~~~~~~~~---~~~~~~--~~~~~nvv~d~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~gp~~~vg 446 (534)
..|+++-.-. .+. ..+.+. ..+.+--|+.+++|+-|.. + ++.+... +..+.+..++.+++-
T Consensus 170 ~kV~lH~~~~-~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-----~----l~~l~~~----l~~l~~ry~K~V~V~ 235 (332)
T PF07745_consen 170 IKVMLHLANG-GDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-----T----LEDLKNN----LNDLASRYGKPVMVV 235 (332)
T ss_dssp SEEEEEES-T-TSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------HHHHHHH----HHHHHHHHT-EEEEE
T ss_pred CcEEEEECCC-CchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-----h----HHHHHHH----HHHHHHHhCCeeEEE
Confidence 9999973211 121 222221 1356778999999954431 2 2222221 222222224344445
Q ss_pred ec----ccchhhhhhhhhhhhhhcccccccccccccccCCCcccHHHHHHHHHHHHHHHhc----CCCcEEEE
Q 009475 447 KS----VTSALICKRCTQIRIRKRNLWLNFVGEWTCEWNVKDASKQDYQRFANAQLDVYGR----ATFGWAYW 511 (534)
Q Consensus 447 Ew----s~a~tdc~~~~~~~~~~~~~~~~~vGEws~~~~~~~a~~~~~~~~~~aq~~~~e~----~~~GW~fW 511 (534)
|- +....|++ .+.+++.+. ...-.++++..++|+++.+++-.. .+.|-|||
T Consensus 236 Et~yp~t~~d~D~~-------------~n~~~~~~~-~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYW 294 (332)
T PF07745_consen 236 ETGYPWTLDDGDGT-------------GNIIGATSL-ISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYW 294 (332)
T ss_dssp EE---SBS--SSSS---------------SSSSSTG-GTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE
T ss_pred eccccccccccccc-------------cccCccccc-cCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEee
Confidence 52 22222221 122444331 111246788889999999887765 67899999
No 6
>TIGR03356 BGL beta-galactosidase.
Probab=99.24 E-value=6.3e-11 Score=127.22 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=103.3
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~ 300 (534)
-+||..| ++|++.|+++|+|++|++|.|- ...|.....+++..++.++++|+.|+++||.+||+||+..-.+.
T Consensus 50 ~d~y~~y--~eDi~l~~~~G~~~~R~si~Ws-ri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~---- 122 (427)
T TIGR03356 50 CDHYHRY--EEDVALMKELGVDAYRFSIAWP-RIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQA---- 122 (427)
T ss_pred ccHHHhH--HHHHHHHHHcCCCeEEcccchh-hcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHH----
Confidence 3466666 8999999999999999999874 44555224677789999999999999999999999998632110
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCC-------------CC-h------HHHHHHHH
Q 009475 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-------------VA-L------DTLKSYYK 359 (534)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~-------------~~-~------~~~~~~~~ 359 (534)
......|. +...+.+.++++.+++||++... -|+++|||.... .+ . ..+.....
T Consensus 123 ---l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~--~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha 197 (427)
T TIGR03356 123 ---LEDRGGWLNRDTAEWFAEYAAVVAERLGDRVK--HWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHG 197 (427)
T ss_pred ---HHhcCCCCChHHHHHHHHHHHHHHHHhCCcCC--EEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHH
Confidence 00012355 67889999999999999999643 368999998410 01 1 12234456
Q ss_pred HHHHHHHhcCCceEE
Q 009475 360 AGYDAVRKYTSTAYV 374 (534)
Q Consensus 360 ~~~~aIR~~~p~~~I 374 (534)
++++++|+..|+..|
T Consensus 198 ~A~~~~~~~~~~~~I 212 (427)
T TIGR03356 198 LAVQALRANGPGAQV 212 (427)
T ss_pred HHHHHHHHhCCCCeE
Confidence 788889988876443
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.18 E-value=7.6e-11 Score=124.72 Aligned_cols=144 Identities=24% Similarity=0.359 Sum_probs=96.0
Q ss_pred hccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc--CCCCCC---CC
Q 009475 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL--HAAPGS---QN 296 (534)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl--H~~pG~---qn 296 (534)
+||..-..++|++.|+++|+|+|||..-.|...+|.++ .| .++.||++|+.|+++||+|||.+ +..|.. ..
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG-~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG-QY---DFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCC-ee---ecHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 35655566999999999999999997656677788654 56 58889999999999999999977 333421 00
Q ss_pred C----CCCCCCC--CCCC----CCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-CCC---hHHHHHHHHHHH
Q 009475 297 G----NEHSATR--DGFQ----EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVA---LDTLKSYYKAGY 362 (534)
Q Consensus 297 g----~~~sg~~--~g~~----~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-~~~---~~~~~~~~~~~~ 362 (534)
. .+..|.. .+.. ...+...+...++++.|++||+++|+|+++++-|||... ... ...+++|+++-|
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 0 0111111 1111 111567888899999999999999999999999999762 222 356778888777
Q ss_pred HHHHhcC
Q 009475 363 DAVRKYT 369 (534)
Q Consensus 363 ~aIR~~~ 369 (534)
..|-+.+
T Consensus 161 ~ti~~LN 167 (374)
T PF02449_consen 161 GTIEALN 167 (374)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 7666543
No 8
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.13 E-value=2.1e-10 Score=101.44 Aligned_cols=77 Identities=26% Similarity=0.328 Sum_probs=69.1
Q ss_pred cceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEeeCCcEEEeecCCCCceEEEeecCCCCCc
Q 009475 65 GTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSE 144 (534)
Q Consensus 65 g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~E 144 (534)
...|+||| .+|+||+++..| .|.++++ ++.||+|++...++++++||+.||+||+++.. | .|.|++++++++|
T Consensus 43 ~g~v~Lrs-~~G~yls~~~~g--~l~~~~~-~~~~e~F~~e~~~~g~~al~~~~G~yl~~~~~--g-~l~~~~~~~~~~e 115 (119)
T cd00257 43 TGKYALRS-HDGKYLSADSDG--GVQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGDGS--G-TLKASSETVGPDE 115 (119)
T ss_pred CCeEEEEE-CCCcEEEEECCC--CEEecCC-CCCCcEEEEEECCCCeEEEEcCCCCEEeecCC--C-eEEEecCCCCccc
Confidence 57899998 699999998766 5899998 99999999999988999999999999999863 3 6999999999999
Q ss_pred eEEE
Q 009475 145 TFQI 148 (534)
Q Consensus 145 tF~i 148 (534)
.|.+
T Consensus 116 ~f~~ 119 (119)
T cd00257 116 LFEL 119 (119)
T ss_pred eecC
Confidence 9964
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.02 E-value=3.2e-08 Score=111.15 Aligned_cols=152 Identities=21% Similarity=0.250 Sum_probs=99.9
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC--CCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA--APGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~--~pG~qng~~~sg~~~g~ 307 (534)
..|++.||++|+|+||+. +. |.. .++++.|.++||+|+-++-. ...... ..........
T Consensus 316 ~~d~~l~K~~G~N~vR~s-----h~------p~~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~-~~~~~~~~~~ 376 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTS-----HY------PYS-------EEMLDLADRHGIVVIDETPAVGLNLSFG-AGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHCCCCEEEec-----cC------CCC-------HHHHHHHHhcCcEEEEeccccccccccc-cccccccccc
Confidence 568899999999999992 11 111 46789999999999987632 110000 0000000011
Q ss_pred CCCC-----hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCC-C
Q 009475 308 QEWG-----DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL-G 381 (534)
Q Consensus 308 ~~W~-----~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~-~ 381 (534)
+.|. +...+...+.++.+.+|+++||+|++|.+.|||.. ..+....+++++++.+|+.||+++|...... .
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~ 453 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMFA 453 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEecccC
Confidence 1221 24556778889999999999999999999999864 2345678899999999999999999886421 1
Q ss_pred CCChhhhhcccCCCceEEEEEeecccC
Q 009475 382 PADHKELLSFASGLSRVVIDVHYYNLF 408 (534)
Q Consensus 382 ~~~~~~~~~~~~~~~nvv~d~H~Y~~f 408 (534)
......+ ...--|+++|.|..|
T Consensus 454 ~~~~~~~-----~~~~Dv~~~N~Y~~w 475 (604)
T PRK10150 454 TPDTDTV-----SDLVDVLCLNRYYGW 475 (604)
T ss_pred Ccccccc-----cCcccEEEEccccee
Confidence 0111111 123468888887654
No 10
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=4.3e-08 Score=97.12 Aligned_cols=165 Identities=24% Similarity=0.397 Sum_probs=106.6
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCC--CCCCCCCc--hHHHHHHHHHHHHHCCCEEEEEcCC-----CCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPT--PPKPFVGG--SSKVLDNAFDWAEKYGVKVIVDLHA-----APGSQNGNE 299 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~--~~~~~~~~--~l~~ld~~v~~a~~~Gl~VIlDlH~-----~pG~qng~~ 299 (534)
.++-|+.||++|+|.|||-| | .+|. .+.+|..+ .++..-++-+.|++.||+|++|+|- .|+.|+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv--w--ndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~--- 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV--W--NDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK--- 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE--e--cCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC---
Confidence 36778889999999999976 3 3442 33455443 4555566677889999999999994 344432
Q ss_pred CCCCCCCCCCCC----hhhHHHHHHHHHHHHHHhcCCC-eEEEEEeccCCCCC-------CCChHHHHHHHHHHHHHHHh
Q 009475 300 HSATRDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRK 367 (534)
Q Consensus 300 ~sg~~~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~-~vlg~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~ 367 (534)
....|. +.-.....++-+...+.+++.. ..-..++-||-... +...+.+..+..+++++||+
T Consensus 138 ------kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avre 211 (403)
T COG3867 138 ------KPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVRE 211 (403)
T ss_pred ------CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhh
Confidence 334575 2222334456666666676653 22335788997642 23578899999999999999
Q ss_pred cCCceEEEEeCCCCC-CC-----hhhhhcccCCCceEEEEEeecccC
Q 009475 368 YTSTAYVIMSNRLGP-AD-----HKELLSFASGLSRVVIDVHYYNLF 408 (534)
Q Consensus 368 ~~p~~~Iiv~~~~~~-~~-----~~~~~~~~~~~~nvv~d~H~Y~~f 408 (534)
++|+..|+++-.-+. .+ ++++.. ..-+..|+...+|+-|
T Consensus 212 v~p~ikv~lHla~g~~n~~y~~~fd~ltk--~nvdfDVig~SyYpyW 256 (403)
T COG3867 212 VSPTIKVALHLAEGENNSLYRWIFDELTK--RNVDFDVIGSSYYPYW 256 (403)
T ss_pred cCCCceEEEEecCCCCCchhhHHHHHHHH--cCCCceEEeeeccccc
Confidence 999999888621111 11 122222 3446678888888444
No 11
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.94 E-value=4.5e-09 Score=92.04 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=68.5
Q ss_pred cceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEeeCCcEEEeecCCCCceEEEeecCCCCCc
Q 009475 65 GTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSE 144 (534)
Q Consensus 65 g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~E 144 (534)
+..|+||| .+|||++++.-| .|+|++..++.|++|+|... ++.+.||+.||+||+++. ++.|.|++++|+.+|
T Consensus 35 ~~~v~lrs-~~GkYls~~~~G--~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~---~g~l~a~~~~~~~~e 107 (111)
T PF06268_consen 35 SYKVALRS-HNGKYLSVDSDG--SVVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGP---NGQLKANATSPGKDE 107 (111)
T ss_dssp EEEEEEEC-TTSEEEEEETTS--EEEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEET---TTEEEEEESSSSGGG
T ss_pred CCEEEEEc-CCCCEEEEcCCC--eEEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCC---CCeEEEcCCCCCcce
Confidence 46778997 699999998866 69999999999999999988 788899999999999875 346999999999999
Q ss_pred eEEE
Q 009475 145 TFQI 148 (534)
Q Consensus 145 tF~i 148 (534)
.|++
T Consensus 108 lf~~ 111 (111)
T PF06268_consen 108 LFEY 111 (111)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9985
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=98.82 E-value=9.7e-09 Score=111.44 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=87.9
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~ 300 (534)
-+||+.| ++|++.|+++|+|+.|++|.|.-++....+....+..++..+++|+.++++||.+||+||+..-.+.-.
T Consensus 67 ~D~Yhry--~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~-- 142 (474)
T PRK09852 67 IDFYHRY--KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLV-- 142 (474)
T ss_pred Cchhhhh--HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH--
Confidence 3577777 899999999999999999998644432212235778999999999999999999999999863221100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
+....|. +...+.|.++++.++++|++.-.. |=.+|||.
T Consensus 143 ----~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~--WiTfNEPn 182 (474)
T PRK09852 143 ----TEYGSWRNRKMVEFFSRYARTCFEAFDGLVKY--WLTFNEIN 182 (474)
T ss_pred ----HhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCe--EEeecchh
Confidence 0113466 678899999999999999997533 44789997
No 13
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.76 E-value=3e-08 Score=107.80 Aligned_cols=115 Identities=20% Similarity=0.281 Sum_probs=88.6
Q ss_pred hhhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCC-CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCC
Q 009475 220 LQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN 298 (534)
Q Consensus 220 ~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~-~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~ 298 (534)
--+||+.| ++|++.|+++|+|+.|++|.|--+ .|.. +...++..++..+++|+.++++||..||+|||..-.+.-.
T Consensus 64 A~D~Yhry--~EDI~Lm~elG~~~yRfSIsWsRI-~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~ 140 (477)
T PRK15014 64 AVDFYGHY--KEDIKLFAEMGFKCFRTSIAWTRI-FPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLV 140 (477)
T ss_pred ccCccccc--HHHHHHHHHcCCCEEEecccceee-ccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH
Confidence 34688877 999999999999999999997433 3432 2335778999999999999999999999998764322100
Q ss_pred CCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 299 EHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 299 ~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
+....|. +...+.|.++.+.++++|++.-.. |=.+|||.
T Consensus 141 ------~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~--WiT~NEp~ 180 (477)
T PRK15014 141 ------QQYGSWTNRKVVDFFVRFAEVVFERYKHKVKY--WMTFNEIN 180 (477)
T ss_pred ------HhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE--EEEecCcc
Confidence 0113465 678899999999999999997433 44789996
No 14
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.75 E-value=2.1e-07 Score=95.44 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=82.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
+.|+..||++|+|+||+.- . | . =.+.++.|.++||.|+.++-...... +...+.. ....
T Consensus 39 ~~d~~l~k~~G~N~iR~~h-----~-p-----~-------~~~~~~~cD~~GilV~~e~~~~~~~~--~~~~~~~-~~~~ 97 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHH-----Y-P-----P-------SPRFYDLCDELGILVWQEIPLEGHGS--WQDFGNC-NYDA 97 (298)
T ss_dssp HHHHHHHHHTT-SEEEETT-----S---------------SHHHHHHHHHHT-EEEEE-S-BSCTS--SSSTSCT-SCTT
T ss_pred HHHHHHHHhcCcceEEccc-----c-c-----C-------cHHHHHHHhhcCCEEEEeccccccCc--cccCCcc-ccCC
Confidence 6899999999999999821 1 1 1 15778899999999999985421100 0001100 0000
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
-.+...+.+.+-++.+.+|+++||+|+.|.+.||+ ....+++++++.+|+.||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeecc
Confidence 01455677888999999999999999999999999 45778899999999999999998764
No 15
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=98.71 E-value=1.2e-07 Score=102.90 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=102.5
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~ 300 (534)
-+||..| ++|++.||++|+|+.|+.|.|- ...|...+++++..++..+++|+.++++||..||+||+..-.+.-
T Consensus 49 ~d~yhry--~eDi~L~~~lG~~~yRfSIsWs-RI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L--- 122 (467)
T TIGR01233 49 SDFYHKY--PVDLELAEEYGVNGIRISIAWS-RIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEAL--- 122 (467)
T ss_pred CchhhhH--HHHHHHHHHcCCCEEEEecchh-hccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHH---
Confidence 4577777 8999999999999999999974 445543346778899999999999999999999999987422210
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------------CC-C-h-H------HHHHHH
Q 009475 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------GV-A-L-D------TLKSYY 358 (534)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~------------~~-~-~-~------~~~~~~ 358 (534)
.....|. ++..+.|.++-+.++++|++ |--|=.+|||... +. . . . .+..-.
T Consensus 123 ----~~~GGW~n~~~v~~F~~YA~~~f~~fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AH 195 (467)
T TIGR01233 123 ----HSNGDFLNRENIEHFIDYAAFCFEEFPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSH 195 (467)
T ss_pred ----HHcCCCCCHHHHHHHHHHHHHHHHHhCC---CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHH
Confidence 0123466 78899999999999999996 3235578999841 11 1 0 1 122335
Q ss_pred HHHHHHHHhcCCceE
Q 009475 359 KAGYDAVRKYTSTAY 373 (534)
Q Consensus 359 ~~~~~aIR~~~p~~~ 373 (534)
.++++++|+..++..
T Consensus 196 a~A~~~~~~~~~~~~ 210 (467)
T TIGR01233 196 ARAVKLYKDKGYKGE 210 (467)
T ss_pred HHHHHHHHHhCCCCe
Confidence 667888888777643
No 16
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=3.8e-08 Score=103.03 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=108.2
Q ss_pred hhhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCC-----CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCC
Q 009475 220 LQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 294 (534)
Q Consensus 220 ~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~-----~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~ 294 (534)
+-.||.+-..++|++.++.+|++.+|+- +.|..+ +....+..+.+++..++.|..++|+|+|.+-.
T Consensus 19 mw~~~~~~ei~~dle~a~~vg~k~lR~f-----iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitliv---- 89 (587)
T COG3934 19 MWPAIGNREIKADLEPAGFVGVKDLRLF-----ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIV---- 89 (587)
T ss_pred HHHHhhhhhhhcccccccCccceeEEEE-----EecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEee----
Confidence 3345554445788889999999999993 233221 11222334999999999999999999998742
Q ss_pred CCCCCCCCCCCCCCCC-----------ChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-CCCChHHHHHHHHHHH
Q 009475 295 QNGNEHSATRDGFQEW-----------GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA-PGVALDTLKSYYKAGY 362 (534)
Q Consensus 295 qng~~~sg~~~g~~~W-----------~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~-~~~~~~~~~~~~~~~~ 362 (534)
+++|.|.+.-...| .+..+....++.+.|.+.||-+|+|+++++-|||.. ...+...+..|...++
T Consensus 90 --g~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy 167 (587)
T COG3934 90 --GLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMY 167 (587)
T ss_pred --cccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHH
Confidence 11121111111111 134455678899999999999999999999999886 3456788999999999
Q ss_pred HHHHhcCCceEEEEeCC
Q 009475 363 DAVRKYTSTAYVIMSNR 379 (534)
Q Consensus 363 ~aIR~~~p~~~Iiv~~~ 379 (534)
..|+..||+|+|-+++.
T Consensus 168 ~yiK~ldd~hlvsvGD~ 184 (587)
T COG3934 168 AYIKWLDDGHLVSVGDP 184 (587)
T ss_pred HHhhccCCCCeeecCCc
Confidence 99999999999998863
No 17
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.2e-07 Score=100.73 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=101.8
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCC-CCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNE 299 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~-~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~ 299 (534)
-+||..| ++|++.+|++|+|+.|+.|.|--.+ |.+.. ...+..++..+++++.|.++||..+|+|||..-.+.-.+
T Consensus 55 ~d~YhrY--keDi~L~~emG~~~~R~SI~WsRIf-P~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~ 131 (460)
T COG2723 55 SDFYHRY--KEDIALAKEMGLNAFRTSIEWSRIF-PNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQK 131 (460)
T ss_pred cchhhhh--HHHHHHHHHcCCCEEEeeeeEEEee-cCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhh
Confidence 3567767 8999999999999999999974333 33322 567789999999999999999999999999853221111
Q ss_pred CCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCC-------------CChH-------HHHHHH
Q 009475 300 HSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-------------VALD-------TLKSYY 358 (534)
Q Consensus 300 ~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~-------------~~~~-------~~~~~~ 358 (534)
....|. ....+.+.++-+.+++||+|.-. -|=.+|||.... ...+ ...-..
T Consensus 132 ------~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk--~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~ 203 (460)
T COG2723 132 ------PYGGWENRETVDAFARYAATVFERFGDKVK--YWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAH 203 (460)
T ss_pred ------ccCCccCHHHHHHHHHHHHHHHHHhcCcce--EEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHH
Confidence 112566 68889999999999999999643 355789998521 1111 111223
Q ss_pred HHHHHHHHhcCCc
Q 009475 359 KAGYDAVRKYTST 371 (534)
Q Consensus 359 ~~~~~aIR~~~p~ 371 (534)
..+++++|+..|+
T Consensus 204 A~avk~~~~~~~~ 216 (460)
T COG2723 204 ALAVKAIKKINPK 216 (460)
T ss_pred HHHHHHHHhhCCc
Confidence 5578889999887
No 18
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.67 E-value=5.5e-08 Score=92.79 Aligned_cols=82 Identities=24% Similarity=0.358 Sum_probs=51.4
Q ss_pred ccceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEe-eCCcEEEeecCCCCceEEEeecCCCC
Q 009475 64 DGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRV-NNKQFIGLENQGQGNGLVAVSNTAGY 142 (534)
Q Consensus 64 ~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~-~n~~~v~~~~~g~~~~~~a~~~~~~~ 142 (534)
+.++|+||| .+|+|||++.-| .|+|+++++|++|+|+++..++ +.++-. .|++|++++.. +. |+|++.++|.
T Consensus 37 ~~~~iafKs-~~GkYLs~Dk~G--~v~a~sdAiGp~E~f~~V~~~~-~~a~~~~~~~~FLs~~~~--~~-i~a~s~~a~~ 109 (191)
T PF06229_consen 37 GDEKIAFKS-GHGKYLSCDKDG--IVSARSDAIGPQEQFEPVFQDG-KPALFSSSNNKFLSVDEE--GD-IRADSKTAGE 109 (191)
T ss_dssp SSS-EEEEE-TTS-BEEE-SSS--BEEE--SS--TTTBEEEE-STT---EEEE-TTS-BEEE-SS--S--EEE--S---T
T ss_pred CCCceEeec-cCccEEEEcCCC--cEEEEeecCCCceEEEEEECCC-CeEEEecCCCeEEEEecc--cC-eeeccccCCC
Confidence 447899999 699999999877 8999999999999999998755 555555 89999999975 33 9999999999
Q ss_pred CceEEEEEeC
Q 009475 143 SETFQIVRKD 152 (534)
Q Consensus 143 ~EtF~ivr~~ 152 (534)
.|.++|--+.
T Consensus 110 ~e~~~iR~~~ 119 (191)
T PF06229_consen 110 NEMIKIRSDA 119 (191)
T ss_dssp TT--EEEE-S
T ss_pred CceEEEEEec
Confidence 9988876654
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=98.61 E-value=8.7e-08 Score=104.05 Aligned_cols=142 Identities=19% Similarity=0.248 Sum_probs=99.5
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCC-CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNE 299 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~-~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~ 299 (534)
-+||+.| ++|++.||++|+|+.|+.|.| ....|.+ ...+++..++..+++|+.++++||..||+||+..-.+.
T Consensus 54 ~d~y~~y--~eDi~l~~~lg~~~yRfsi~W-~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~--- 127 (455)
T PF00232_consen 54 CDHYHRY--KEDIALMKELGVNAYRFSISW-SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLW--- 127 (455)
T ss_dssp TGHHHHH--HHHHHHHHHHT-SEEEEE--H-HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHH---
T ss_pred ccchhhh--hHHHHHHHhhccceeeeecch-hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccc---
Confidence 4566666 899999999999999999997 4455654 45677889999999999999999999999998621100
Q ss_pred CCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------------C-CC-------hHHHHHHH
Q 009475 300 HSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------G-VA-------LDTLKSYY 358 (534)
Q Consensus 300 ~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~------------~-~~-------~~~~~~~~ 358 (534)
......|. +...+.+.++-+.++++|++.-.. |=.+|||... + .+ ...+....
T Consensus 128 ----l~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~--w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AH 201 (455)
T PF00232_consen 128 ----LEDYGGWLNRETVDWFARYAEFVFERFGDRVKY--WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAH 201 (455)
T ss_dssp ----HHHHTGGGSTHHHHHHHHHHHHHHHHHTTTBSE--EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHH
T ss_pred ----eeecccccCHHHHHHHHHHHHHHHHHhCCCcce--EEeccccceeeccccccccccccccccchhhHHHhhHHHHH
Confidence 00012354 688899999999999999996443 4478999841 1 11 12234456
Q ss_pred HHHHHHHHhcCCceEE
Q 009475 359 KAGYDAVRKYTSTAYV 374 (534)
Q Consensus 359 ~~~~~aIR~~~p~~~I 374 (534)
.++++++|+..++..|
T Consensus 202 a~A~~~~~~~~~~~~I 217 (455)
T PF00232_consen 202 AKAVKAIKEKYPDGKI 217 (455)
T ss_dssp HHHHHHHHHHTCTSEE
T ss_pred HHHHHHHhhcccceEE
Confidence 7788999998876554
No 20
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.60 E-value=2.4e-07 Score=88.45 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=57.8
Q ss_pred EeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEe-cCceEEEEeeCCcEEEeecCCCCceEEEeecCCCCCceEEE
Q 009475 70 FMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRV-NETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQI 148 (534)
Q Consensus 70 ~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~-~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~EtF~i 148 (534)
|.++.+|.+.+||.=. .....++.|.|...++ ++++|+||+++|+|++||.. +.|+|+++++|+.|+|++
T Consensus 4 i~a~d~G~~t~~ePhd------~~~~p~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk~---G~v~a~sdAiGp~E~f~~ 74 (191)
T PF06229_consen 4 IEALDNGLFTTGEPHD------VGEGPDPRQVWVATRVPGDEKIAFKSGHGKYLSCDKD---GIVSARSDAIGPQEQFEP 74 (191)
T ss_dssp EEE-TTS-EEE----S------SS----TTT-EEEEE--SSS-EEEEETTS-BEEE-SS---SBEEE--SS--TTTBEEE
T ss_pred eeeeccCCccccCCCc------CCCCCChhHeEEEEEecCCCceEeeccCccEEEEcCC---CcEEEEeecCCCceEEEE
Confidence 5667788888887732 1345568999999999 89999999999999999974 369999999999999999
Q ss_pred EEeCCCCceEEEEe-cCCceEEecccceeecCC
Q 009475 149 VRKDGDSSRVRLSA-SNGMFIQAISETRLTADY 180 (534)
Q Consensus 149 vr~~~~~~~v~i~~-~nG~~Lq~~g~~~v~ad~ 180 (534)
|..++. +.+.. .|+.||.++...-+.++-
T Consensus 75 V~~~~~---~a~~~~~~~~FLs~~~~~~i~a~s 104 (191)
T PF06229_consen 75 VFQDGK---PALFSSSNNKFLSVDEEGDIRADS 104 (191)
T ss_dssp E-STT-----EEEE-TTS-BEEE-SSS-EEE--
T ss_pred EECCCC---eEEEecCCCeEEEEecccCeeecc
Confidence 997654 44455 899999987522244443
No 21
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=98.60 E-value=1.2e-07 Score=103.13 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=101.4
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~ 300 (534)
-+||+.| ++|++.||++|+|+.|+.|.|- ...|+..+++++..++..+++|+.++++||..+|+||+..-.+.-.
T Consensus 50 ~d~Y~ry--~eDi~L~~~lG~~~yRfSIsWs-RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~-- 124 (469)
T PRK13511 50 SDFYHRY--PEDLKLAEEFGVNGIRISIAWS-RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALH-- 124 (469)
T ss_pred cchhhhh--HHHHHHHHHhCCCEEEeeccHh-hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHH--
Confidence 4577777 9999999999999999999974 4445433467788999999999999999999999999874322100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------------CCC--h-H------HHHHHH
Q 009475 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------GVA--L-D------TLKSYY 358 (534)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~------------~~~--~-~------~~~~~~ 358 (534)
....|. ++..+.|.++-+.++++|+| -.. |=.+|||... +.. . . .+....
T Consensus 125 -----~~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~--W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAH 196 (469)
T PRK13511 125 -----SNGDWLNRENIDHFVRYAEFCFEEFPE-VKY--WTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAH 196 (469)
T ss_pred -----HcCCCCCHHHHHHHHHHHHHHHHHhCC-CCE--EEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHH
Confidence 112466 77889999999999999999 432 4578999741 111 1 1 122335
Q ss_pred HHHHHHHHhcCCc
Q 009475 359 KAGYDAVRKYTST 371 (534)
Q Consensus 359 ~~~~~aIR~~~p~ 371 (534)
.++++++|+..++
T Consensus 197 a~A~~~~~~~~~~ 209 (469)
T PRK13511 197 ARAVKLFKDKGYK 209 (469)
T ss_pred HHHHHHHHHhCCC
Confidence 6678888887665
No 22
>PLN02998 beta-glucosidase
Probab=98.57 E-value=1.5e-07 Score=102.79 Aligned_cols=116 Identities=25% Similarity=0.316 Sum_probs=89.6
Q ss_pred hhhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCC
Q 009475 220 LQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNE 299 (534)
Q Consensus 220 ~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~ 299 (534)
--+||..| ++|++.||++|+|+.|+.|.|- ...|+..++++++.++..+++|+.+.++||..+|+||+..-.+.-.
T Consensus 77 a~D~Yhry--~EDi~lmk~lG~~~YRfSIsWs-RI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~- 152 (497)
T PLN02998 77 ACDQYHKY--KEDVKLMADMGLEAYRFSISWS-RLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALE- 152 (497)
T ss_pred cccHHHhh--HHHHHHHHHcCCCeEEeeccHH-hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH-
Confidence 34577777 8999999999999999999974 4445433457788999999999999999999999999874221100
Q ss_pred CCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 300 HSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 300 ~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
+....|. ++..+.|.++-+.+.++|+|.-.. |=.+|||..
T Consensus 153 -----~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~~ 193 (497)
T PLN02998 153 -----DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSH--WTTINEVNV 193 (497)
T ss_pred -----HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCE--EEEccCcch
Confidence 0013465 678899999999999999996433 347899984
No 23
>PLN02849 beta-glucosidase
Probab=98.56 E-value=1.4e-07 Score=103.11 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=88.4
Q ss_pred hccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCC
Q 009475 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (534)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~s 301 (534)
+||..| ++|++.||++|+|+.|+.|.| ....|+..++++++.++..+++|+.+.++||..+|+|||..-.+.-.
T Consensus 76 D~YhrY--~eDI~Lm~~lG~~aYRfSIsW-sRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~--- 149 (503)
T PLN02849 76 DGYHKY--KEDVKLMVETGLDAFRFSISW-SRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLE--- 149 (503)
T ss_pred cHHHhH--HHHHHHHHHcCCCeEEEeccH-HhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHH---
Confidence 466666 899999999999999999997 44455443467888999999999999999999999999873221000
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
+....|. ++..+.|.++-+.++++|+|.-.. |=.+|||..
T Consensus 150 ---~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~--WiT~NEP~~ 190 (503)
T PLN02849 150 ---DDYGGWINRRIIKDFTAYADVCFREFGNHVKF--WTTINEANI 190 (503)
T ss_pred ---HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCE--EEEecchhh
Confidence 0013465 678899999999999999997433 346899984
No 24
>PLN02814 beta-glucosidase
Probab=98.55 E-value=1.8e-07 Score=102.36 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=88.9
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~ 300 (534)
-+||+.| ++|++.||++|+|+.|+.|.|- ...|+..++++++.++..+++|+.+.++||..+|+|||..-.+.-.
T Consensus 73 ~D~Yhry--~EDI~L~k~lG~~ayRfSIsWs-RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~-- 147 (504)
T PLN02814 73 SDGYHKY--KEDVKLMAEMGLESFRFSISWS-RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLE-- 147 (504)
T ss_pred ccHHHhh--HHHHHHHHHcCCCEEEEeccHh-hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH--
Confidence 3567666 8999999999999999999974 4445433467888999999999999999999999999873221100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
+....|. ++..+.|.++-+.++++|+|.-.. |=.+|||..
T Consensus 148 ----~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~--WiT~NEP~~ 188 (504)
T PLN02814 148 ----DEYGGWINRKIIEDFTAFADVCFREFGEDVKL--WTTINEATI 188 (504)
T ss_pred ----HhcCCcCChhHHHHHHHHHHHHHHHhCCcCCE--EEeccccch
Confidence 0113466 678899999999999999997433 447899984
No 25
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.53 E-value=3.1e-07 Score=100.00 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=88.4
Q ss_pred hhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCC-CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCC
Q 009475 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNE 299 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~-~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~ 299 (534)
-+||..| ++|++.||++|+|+.|+.|.| ....|.. +..++++.++..+++|+.+.++||..+|+||+..-.+.-.
T Consensus 69 ~d~Yhry--~eDi~Lm~~lG~~aYRfSIsW-sRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~- 144 (478)
T PRK09593 69 IDMYHHY--KEDIALFAEMGFKTYRMSIAW-TRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI- 144 (478)
T ss_pred cchHHhh--HHHHHHHHHcCCCEEEEecch-hhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH-
Confidence 4577777 999999999999999999997 3444542 2346778999999999999999999999999874222100
Q ss_pred CCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 300 HSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 300 ~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
+....|. ++..+.|.++-+.++++|++.-.. |=.+|||..
T Consensus 145 -----~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~~ 185 (478)
T PRK09593 145 -----EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKY--WLTFNEINM 185 (478)
T ss_pred -----hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE--EEeecchhh
Confidence 0113466 677899999999999999997433 347899973
No 26
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.52 E-value=2.8e-07 Score=100.30 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=87.8
Q ss_pred hhhccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCC-CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCC
Q 009475 220 LQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN 298 (534)
Q Consensus 220 ~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~-~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~ 298 (534)
--+||+.| ++|++.||++|+|+.|+.|.|- ...|+. +...++..++..+++|+.+.++||..+|+||+..-.+.-.
T Consensus 62 a~D~Yhry--~eDi~Lm~~lG~~~yRfSIsWs-RI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~ 138 (476)
T PRK09589 62 AIDFYHRY--KEDIALFAEMGFKCFRTSIAWT-RIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLV 138 (476)
T ss_pred cccHHHhh--HHHHHHHHHcCCCEEEeccchh-hcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence 34577777 8999999999999999999974 444542 2235778999999999999999999999999874222100
Q ss_pred CCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 299 EHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 299 ~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
+....|. ++..+.|.++-+.++++|+|.-.. |=.+|||.
T Consensus 139 ------~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~--WiT~NEp~ 178 (476)
T PRK09589 139 ------TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKY--WMTFNEIN 178 (476)
T ss_pred ------HhcCCcCChHHHHHHHHHHHHHHHHhcCCCCE--EEEecchh
Confidence 0113465 677899999999999999996433 34789996
No 27
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.39 E-value=3.7e-05 Score=77.15 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC-----hhhHHHHHHHHHHHHHHhcCCCeEEEEEe
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSLAAIEL 340 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~-----~~~~~~~~~~w~~lA~ryk~~~~vlg~eL 340 (534)
.++.+|+++++|+++||+| ..|..- +++ ..|.|. +...+.+.++.+.+++||++. |..+|+
T Consensus 14 n~~~~D~~~~~a~~~gi~v--~gH~l~------W~~----~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~--i~~wdV 79 (254)
T smart00633 14 NFSGADAIVNFAKENGIKV--RGHTLV------WHS----QTPDWVFNLSKETLLARLENHIKTVVGRYKGK--IYAWDV 79 (254)
T ss_pred ChHHHHHHHHHHHHCCCEE--EEEEEe------ecc----cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCc--ceEEEE
Confidence 5889999999999999998 344321 011 122343 244667889999999999986 677999
Q ss_pred ccCCCCCCCC---hHHH-----HHHHHHHHHHHHhcCCceEEEEeCC-CCCC--Chhhhhc-------ccCCCceEEEEE
Q 009475 341 INEPLAPGVA---LDTL-----KSYYKAGYDAVRKYTSTAYVIMSNR-LGPA--DHKELLS-------FASGLSRVVIDV 402 (534)
Q Consensus 341 ~NEP~~~~~~---~~~~-----~~~~~~~~~aIR~~~p~~~Iiv~~~-~~~~--~~~~~~~-------~~~~~~nvv~d~ 402 (534)
+|||...+.. ...| .+|+..+++++|+++|+..+++.+. ..+. ....++. -..+.+.|-+..
T Consensus 80 ~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~ 159 (254)
T smart00633 80 VNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQS 159 (254)
T ss_pred eeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeee
Confidence 9999864311 0122 2788999999999999999998751 1111 0111111 113457788888
Q ss_pred eecc
Q 009475 403 HYYN 406 (534)
Q Consensus 403 H~Y~ 406 (534)
|.+.
T Consensus 160 H~~~ 163 (254)
T smart00633 160 HLSL 163 (254)
T ss_pred eecC
Confidence 8763
No 28
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.34 E-value=2.6e-06 Score=93.31 Aligned_cols=185 Identities=20% Similarity=0.262 Sum_probs=103.3
Q ss_pred eeeecccCCCcchhhhhhccCCCCCHHHHHHHH-hCCccEEEeCcccccccCCCCCCCCC----Cc----hHHHHHHHHH
Q 009475 205 YQITNGFGPDKAPQVLQDHWDSYITDEDFKFLS-SNGINAVRIPVGWWIANDPTPPKPFV----GG----SSKVLDNAFD 275 (534)
Q Consensus 205 ~~~~~~~G~~~a~~~~~~hw~~~ite~d~~~ia-~~G~N~VRIPv~~w~~~~~~~~~~~~----~~----~l~~ld~~v~ 275 (534)
|..|- |...|...++..| .+.+..++ +.||..||+. +++.++ -. .+. ++ .+..||++++
T Consensus 24 W~~~~--~~g~a~~~l~~~~-----q~~l~~~~~~~gf~yvR~h---~l~~dd-m~-~~~~~~~~~~~~Ynf~~lD~i~D 91 (486)
T PF01229_consen 24 WRFCV--GSGRANLLLRADW-----QEQLRELQEELGFRYVRFH---GLFSDD-MM-VYSESDEDGIPPYNFTYLDQILD 91 (486)
T ss_dssp GGSEE--EES-GGGGGBHHH-----HHHHHHHHCCS--SEEEES----TTSTT-TT--EEEEETTEEEEE--HHHHHHHH
T ss_pred hhhhc--CCCchHHHhhHHH-----HHHHHHHHhccCceEEEEE---eeccCc-hh-hccccccCCCCcCChHHHHHHHH
Confidence 44443 3345777888888 56777775 7999999992 333221 10 110 11 5999999999
Q ss_pred HHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC-----hhhHHHHHHHHHHHHHHhcCC-----CeEEEEEeccCCC
Q 009475 276 WAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANR-----PSLAAIELINEPL 345 (534)
Q Consensus 276 ~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~-----~~~~~~~~~~w~~lA~ryk~~-----~~vlg~eL~NEP~ 345 (534)
...++||+.+|.|--.|..-. ++.. ....|. +...+++.++.+.+++||.+. -.-.-||+.|||.
T Consensus 92 ~l~~~g~~P~vel~f~p~~~~----~~~~-~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd 166 (486)
T PF01229_consen 92 FLLENGLKPFVELGFMPMALA----SGYQ-TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPD 166 (486)
T ss_dssp HHHHCT-EEEEEE-SB-GGGB----SS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TT
T ss_pred HHHHcCCEEEEEEEechhhhc----CCCC-ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCC
Confidence 999999999999976653211 1100 011111 456677777777777766432 1123599999998
Q ss_pred CCC----CChHHHHHHHHHHHHHHHhcCCceEEEEeC--CCCCCC-hhhhhccc--CCCceEEEEEeeccc
Q 009475 346 APG----VALDTLKSYYKAGYDAVRKYTSTAYVIMSN--RLGPAD-HKELLSFA--SGLSRVVIDVHYYNL 407 (534)
Q Consensus 346 ~~~----~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~--~~~~~~-~~~~~~~~--~~~~nvv~d~H~Y~~ 407 (534)
... ...+++.++|+..+++||+++|...|- ++ .++... ...++.+. ...+--.+++|.|..
T Consensus 167 ~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vG-Gp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~ 236 (486)
T PF01229_consen 167 LKDFWWDGTPEEYFELYDATARAIKAVDPELKVG-GPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGT 236 (486)
T ss_dssp STTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEE-EEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-B
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhCCCCccc-CccccccHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence 742 234678899999999999999987653 33 222111 13333322 223445789999953
No 29
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.31 E-value=7.7e-07 Score=74.59 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=48.8
Q ss_pred HHHHhcCCCeEEEEEeccC-CCCC---------CCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCChhhhhcccCC
Q 009475 325 LAARYANRPSLAAIELINE-PLAP---------GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASG 394 (534)
Q Consensus 325 lA~ryk~~~~vlg~eL~NE-P~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~~~~~~~~~~~~~ 394 (534)
|.++|++++.|+++||.|| |... ....+.+.+|++++.+.||+++|+++|..+. +. .....+.... .
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~-~~-~~~~~~~~~~-~ 77 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF-WG-GDWEDLEQLQ-A 77 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B----S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec-cc-CCHHHHHHhc-h
Confidence 4578999999999999999 7721 1124778999999999999999999988752 32 2222333332 2
Q ss_pred CceEEEEEeec
Q 009475 395 LSRVVIDVHYY 405 (534)
Q Consensus 395 ~~nvv~d~H~Y 405 (534)
..--++++|.|
T Consensus 78 ~~~DvisfH~Y 88 (88)
T PF12876_consen 78 ENLDVISFHPY 88 (88)
T ss_dssp TT-SSEEB-EE
T ss_pred hcCCEEeeecC
Confidence 34568999998
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.02 E-value=0.00012 Score=68.68 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCccEEEeCcc-ccc-ccCCCC--CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVG-WWI-ANDPTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~-~w~-~~~~~~--~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~ 305 (534)
+++|+.|++.|+++|=|-.. +.. ...|.. +..+....-+.|+.+++.|.++||+|.+.|...|.... .
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~----~---- 94 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD----Q---- 94 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh----c----
Confidence 78999999999999966421 110 001110 01122345678999999999999999999987653311 1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~ 380 (534)
+...| ..+....+.+.|+++|+++|++.|+=|-.|+.... ..-...++.+.+.++++.++.+|+|++.+
T Consensus 95 ~~~~~---~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 95 GDLDW---EAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred cCHHH---HHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 11222 33445568889999999999999999999998632 23366777888888888889999998643
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.94 E-value=0.00011 Score=87.28 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc----CCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 305 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl----H~~pG~qng~~~sg~~~ 305 (534)
+.||+.||++|+|+||+. +. | .. .+..+.|.++||+|+-+. |+.... +...
T Consensus 374 ~~di~lmK~~g~NaVR~s-----Hy-P--~~----------p~fydlcDe~GilV~dE~~~e~hg~~~~-------~~~~ 428 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCS-----HY-P--NH----------PLWYELCDRYGLYVVDEANIETHGMVPM-------NRLS 428 (1027)
T ss_pred HHHHHHHHHCCCCEEEec-----CC-C--CC----------HHHHHHHHHcCCEEEEecCccccCCccc-------cCCC
Confidence 568999999999999992 11 1 11 456899999999999885 332100 0000
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.. +...+.+.+-++.+.+|.++||.|+.|.+.||+.. + ....++++.+|+.||+++|...+
T Consensus 429 ~d----p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~-g-------~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 429 DD----PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH-G-------ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CC----HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc-C-------hhHHHHHHHHHhhCCCCcEEECC
Confidence 11 23456677778999999999999999999999863 1 11467888999999999998864
No 32
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.93 E-value=5.1e-05 Score=78.68 Aligned_cols=136 Identities=20% Similarity=0.249 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
++-++.||++|+|+|-++|.|- .-+|.++ .|+=.....|++.++.|+++||+|||-.=-+- ++....| |.|.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~-~he~~~g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi---~aE~~~g---G~P~ 98 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWN-LHEPEEG-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYI---CAEWDNG---GLPA 98 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HH-HHSSBTT-B---SGGG-HHHHHHHHHHTT-EEEEEEES------TTBGGG---G--G
T ss_pred HHHHHHHHhCCcceEEEecccc-ccCCCCC-cccccchhhHHHHHHHHHHcCcEEEeccccee---cccccch---hhhh
Confidence 7899999999999999999874 4455443 56544557799999999999999998742211 1111111 3344
Q ss_pred CC------------hhhHHHHHHHHHHHHHHhcC-----CCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCce
Q 009475 310 WG------------DSNVADTVAVIDFLAARYAN-----RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 310 W~------------~~~~~~~~~~w~~lA~ryk~-----~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
|. +...+...+.++.|++..+. -..|+++++=||..... .-.+|++.+.++.|+...+.
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~----~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYG----TDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTS----S-HHHHHHHHHHHHHTT-SS
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCc----ccHhHHHHHHHHHHHhhCcc
Confidence 42 34455555666666665443 24688899999987322 23677777788888877774
Q ss_pred EEEEe
Q 009475 373 YVIMS 377 (534)
Q Consensus 373 ~Iiv~ 377 (534)
++...
T Consensus 175 ~~~~t 179 (319)
T PF01301_consen 175 VLLYT 179 (319)
T ss_dssp SBEEE
T ss_pred ceeec
Confidence 44443
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.91 E-value=6.3e-05 Score=76.95 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCccEEEeCcccc-ccc-CC--CC--------CC-----CCCCchHHHHHHHHHHHHHCCCEEEEE-cCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWW-IAN-DP--TP--------PK-----PFVGGSSKVLDNAFDWAEKYGVKVIVD-LHAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w-~~~-~~--~~--------~~-----~~~~~~l~~ld~~v~~a~~~Gl~VIlD-lH~~ 291 (534)
+..++..|+.|||+||+-+--. ... .+ .+ +. ...+.+++.+|++|+.|.++||.+-|= +|+.
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~ 112 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGC 112 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-HH
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 4567888999999999866421 111 00 00 01 134679999999999999999998554 5522
Q ss_pred CCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 009475 292 PGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 371 (534)
Q Consensus 292 pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 371 (534)
+.. .+.+..+.. .-..+....+++.|++||+..|+|+ +-|-||=.. ...-.+.++++.+.||+.+|.
T Consensus 113 ~~~-~~~Wg~~~~-------~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~~----~~~~~~~w~~~~~~i~~~dp~ 179 (289)
T PF13204_consen 113 PYV-PGTWGFGPN-------IMPPENAERYGRYVVARYGAYPNVI-WILGGDYFD----TEKTRADWDAMARGIKENDPY 179 (289)
T ss_dssp HHH--------TT-------SS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHHH--S
T ss_pred ccc-ccccccccc-------CCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccCC----CCcCHHHHHHHHHHHHhhCCC
Confidence 210 011111100 1346788899999999999999988 889999721 123356677888999999998
Q ss_pred eEEEEeC
Q 009475 372 AYVIMSN 378 (534)
Q Consensus 372 ~~Iiv~~ 378 (534)
.++.+++
T Consensus 180 ~L~T~H~ 186 (289)
T PF13204_consen 180 QLITIHP 186 (289)
T ss_dssp S-EEEEE
T ss_pred CcEEEeC
Confidence 8888875
No 34
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.90 E-value=0.00011 Score=87.26 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc----CCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 305 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl----H~~pG~qng~~~sg~~~ 305 (534)
+.|++.||++|+|+||+. +. | .. .+..+.|.++||+|+-+. |..+... .... ..
T Consensus 358 ~~dl~lmK~~g~NavR~s-----Hy-P--~~----------~~fydlcDe~GllV~dE~~~e~~g~~~~~-~~~~---~~ 415 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTA-----HY-P--ND----------PRFYELCDIYGLFVMAETDVESHGFANVG-DISR---IT 415 (1021)
T ss_pred HHHHHHHHHCCCCEEEec-----CC-C--CC----------HHHHHHHHHCCCEEEECCcccccCccccc-cccc---cc
Confidence 578999999999999983 11 1 11 356889999999999875 4322100 0000 00
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.. +...+.+++-.+.+.+|+++||.|+.|.+.||... + . ..+++++.+|+.||+++|..++
T Consensus 416 ~~----p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~-g---~----~~~~~~~~~k~~DptR~v~~~~ 476 (1021)
T PRK10340 416 DD----PQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY-G---C----NIRAMYHAAKALDDTRLVHYEE 476 (1021)
T ss_pred CC----HHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-c---H----HHHHHHHHHHHhCCCceEEeCC
Confidence 01 23345566677889999999999999999999853 1 1 2368899999999999987653
No 35
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.0001 Score=82.46 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=91.7
Q ss_pred CCHHHHHHHHhCCccEEEe-CcccccccCCCCCCCCCCchHHHHHHH-HHHHHHCCCEEEEEc-C--CCCCCCC-CC---
Q 009475 228 ITDEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPFVGGSSKVLDNA-FDWAEKYGVKVIVDL-H--AAPGSQN-GN--- 298 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRI-Pv~~w~~~~~~~~~~~~~~~l~~ld~~-v~~a~~~Gl~VIlDl-H--~~pG~qn-g~--- 298 (534)
+.++|++.||++|+|+||+ .|. |...+|..+ .|+ +..+|.. ++.|.+.||+|||-- - +.|..-. +.
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~fa-W~~~eP~eG-~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFA-WNLHEPEEG-KFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEE-eeccCcccc-ccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 3489999999999999999 666 466677654 443 3456666 999999999999965 1 1111100 00
Q ss_pred ---CCCCCCCCCCCCC------hhhHHHHHHHHHHHHHH-hcCCCeEEEEEeccCCCC-C---CCChHHHHHHHHHHHHH
Q 009475 299 ---EHSATRDGFQEWG------DSNVADTVAVIDFLAAR-YANRPSLAAIELINEPLA-P---GVALDTLKSYYKAGYDA 364 (534)
Q Consensus 299 ---~~sg~~~g~~~W~------~~~~~~~~~~w~~lA~r-yk~~~~vlg~eL~NEP~~-~---~~~~~~~~~~~~~~~~a 364 (534)
+..+.......|. +.+.+....+.++|++| |+++++|+++.+-||=.. + ......++.|.++-|..
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~ 185 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGS 185 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcch
Confidence 0111111112221 45667777899999999 999999999999998443 1 22345667788887776
Q ss_pred HHhcCC
Q 009475 365 VRKYTS 370 (534)
Q Consensus 365 IR~~~p 370 (534)
+...+.
T Consensus 186 l~~ln~ 191 (673)
T COG1874 186 LDNLNE 191 (673)
T ss_pred HHhhhh
Confidence 655544
No 36
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.78 E-value=0.00024 Score=72.33 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
+.|+..|+++|+|+||| | ..+|... =|..+....+.||||||||-....+-+.. ...+.
T Consensus 56 ~rDi~~l~~LgiNtIRV---Y--~vdp~~n----------Hd~CM~~~~~aGIYvi~Dl~~p~~sI~r~------~P~~s 114 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRV---Y--SVDPSKN----------HDECMSAFADAGIYVILDLNTPNGSINRS------DPAPS 114 (314)
T ss_dssp HHHHHHHHHHT-SEEEE---S-----TTS------------HHHHHHHHHTT-EEEEES-BTTBS--TT------S----
T ss_pred HHhHHHHHHcCCCEEEE---E--EeCCCCC----------HHHHHHHHHhCCCEEEEecCCCCccccCC------CCcCC
Confidence 78999999999999999 2 2344321 37888889999999999998874443211 11124
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCC---ChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV---ALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~---~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
|.. ...+-...+.+.|+++++++||-+-||-..... ...-+++..+++-.-|++.+. +.|-|+
T Consensus 115 w~~----~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG 180 (314)
T PF03198_consen 115 WNT----DLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG 180 (314)
T ss_dssp --H----HHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EE
T ss_pred CCH----HHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCcee
Confidence 543 344445566667889999999999999875321 234556666666666666554 444444
No 37
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.51 E-value=0.0021 Score=58.42 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=65.0
Q ss_pred cccceeEEeeeeceeEEEeecCC-CceEEeccCCCC-CcceEEEEEecCceEEEEeeCCcEEEeecCCC----CceEEEe
Q 009475 63 LDGTQVQFMSTKFQKYIAAESGG-GTIVVANRTSAS-GWETFRLWRVNETFYNFRVNNKQFIGLENQGQ----GNGLVAV 136 (534)
Q Consensus 63 ~~g~~~~~~s~~~~~~~~a~~~g-~~~~~anr~~~~-~wetf~~~~~~~~~~~~~~~n~~~v~~~~~g~----~~~~~a~ 136 (534)
-||.-|.|+| ..||||+|+--| +-.+--+|.+.. .| +=+++.-+.+-+.||++.|.|++|.+... .+.-+..
T Consensus 5 ~d~~~VRLRS-~~~kYL~ADeDg~~Vs~~~~~~s~na~W-~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q 82 (142)
T PF04601_consen 5 PDGKHVRLRS-HHGKYLHADEDGEGVSQDRRGASLNAAW-TVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVVQ 82 (142)
T ss_pred CCCCEEEEEe-cCCCEEEEcCCCCeEEECCCCCCCcceE-EEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEEe
Confidence 4789999999 999999996644 333334444332 23 22223323467899999999999985421 1222222
Q ss_pred ec--CCCCCceEEEEEeCCCCceEEEEecCCceEEeccc
Q 009475 137 SN--TAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISE 173 (534)
Q Consensus 137 ~~--~~~~~EtF~ivr~~~~~~~v~i~~~nG~~Lq~~g~ 173 (534)
+. .+...-..+-++.+ ..|.++..+|.||.++|.
T Consensus 83 ~~~~~~d~~~~Wepvr~g---~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 83 TDPDRLDSSVEWEPVRDG---FYVKLRHRSGRYLRANGG 118 (142)
T ss_pred cCCccCCCCceEEEecCC---CEEEEEecCCceEEcCCC
Confidence 22 12222223445532 479999999999999874
No 38
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00042 Score=74.86 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=83.4
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCC--CCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPP--KPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~--~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~ 307 (534)
++|++.|+++|+++-|+.|+|--++ |... ....++.++....+|+...++||..+++|.+..-.|.-. +..
T Consensus 94 keDv~Lmk~lgv~afRFSIsWSRIl-P~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~Le------DeY 166 (524)
T KOG0626|consen 94 KEDVKLMKELGVDAFRFSISWSRIL-PNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALE------DEY 166 (524)
T ss_pred HHHHHHHHHcCCCeEEEEeehHhhC-CCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHH------HHh
Confidence 8999999999999999999984333 3322 346678999999999999999999999997653222111 123
Q ss_pred CCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 308 QEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 308 ~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
..|. +...+.|.++-+..-++|.|.- --|=-+|||+.
T Consensus 167 gGwLn~~ivedF~~yA~~CF~~fGDrV--K~WiT~NEP~v 204 (524)
T KOG0626|consen 167 GGWLNPEIVEDFRDYADLCFQEFGDRV--KHWITFNEPNV 204 (524)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhcccc--eeeEEecccce
Confidence 3465 7788899999999999999974 33557899993
No 39
>PLN03059 beta-galactosidase; Provisional
Probab=97.25 E-value=0.0038 Score=71.46 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
++-++.+|++|+|+|=.-|.|- +-+|.++ .|+=.....|.+.|+.|++.||+|||=.--+ -.+.+..| |.|.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn-~HEp~~G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY---IcAEw~~G---GlP~ 133 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWN-GHEPSPG-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY---ICAEWNFG---GFPV 133 (840)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccCCCCC-eeeccchHHHHHHHHHHHHcCCEEEecCCcc---eeeeecCC---CCch
Confidence 7889999999999999988764 4455543 5554556779999999999999999853211 01111122 3344
Q ss_pred CC------------hhhHHHHHHHHHHHHHHhcC-------CCeEEEEEeccCCCCCCC-ChHHHHHHHHHHHHHHHhcC
Q 009475 310 WG------------DSNVADTVAVIDFLAARYAN-------RPSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYT 369 (534)
Q Consensus 310 W~------------~~~~~~~~~~w~~lA~ryk~-------~~~vlg~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~ 369 (534)
|. +...+...++++.|..+.+. -..|++.++=||=..... ....=++|++.+.+..++.+
T Consensus 134 WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 134 WLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred hhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcC
Confidence 42 34555666777777776642 235888999999532100 00112677778888888888
Q ss_pred CceEEEEeC
Q 009475 370 STAYVIMSN 378 (534)
Q Consensus 370 p~~~Iiv~~ 378 (534)
-+.+++..+
T Consensus 214 i~VPl~t~d 222 (840)
T PLN03059 214 TGVPWVMCK 222 (840)
T ss_pred CCcceEECC
Confidence 888887765
No 40
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.03 E-value=0.027 Score=58.51 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=98.3
Q ss_pred HHHHHHhCCccEEEeCccc-ccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEE---EEcCCCCCCCCCCCCCCCCCCC
Q 009475 232 DFKFLSSNGINAVRIPVGW-WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI---VDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 232 d~~~ia~~G~N~VRIPv~~-w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VI---lDlH~~pG~qng~~~sg~~~g~ 307 (534)
....+-..-||.|=..-.. |...++.++ .+ .++..|+++++|+++||.|- |=.|. |.+.+-...
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g-~~---~~~~~D~~~~~a~~~g~~vrGH~LvW~~----~~P~w~~~~---- 93 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPEPG-RF---NFESADAILDWARENGIKVRGHTLVWHS----QTPDWVFNL---- 93 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESBTT-BE---E-HHHHHHHHHHHHTT-EEEEEEEEESS----SS-HHHHTS----
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCCCC-cc---CccchhHHHHHHHhcCcceeeeeEEEcc----cccceeeec----
Confidence 5666666778888764221 334444332 22 57889999999999999985 33343 111111000
Q ss_pred CCCChh----hHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCC-----ChHHHH-----HHHHHHHHHHHhcCCceE
Q 009475 308 QEWGDS----NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-----ALDTLK-----SYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 308 ~~W~~~----~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~-----~~~~~~-----~~~~~~~~aIR~~~p~~~ 373 (534)
..+.+. ..+...+.++.+++||++...|..||++|||..... ....|. .|...+++..|+.+|+..
T Consensus 94 ~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~ 173 (320)
T PF00331_consen 94 ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAK 173 (320)
T ss_dssp TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSE
T ss_pred cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcE
Confidence 011212 456677899999999998778999999999987432 011232 588999999999999999
Q ss_pred EEEeCC-CCCCC-hhhhhcc-------cCCCceEEEEEeeccc
Q 009475 374 VIMSNR-LGPAD-HKELLSF-------ASGLSRVVIDVHYYNL 407 (534)
Q Consensus 374 Iiv~~~-~~~~~-~~~~~~~-------~~~~~nvv~d~H~Y~~ 407 (534)
+++.+. ..... ...+..+ ..+-+.|-+..|+-..
T Consensus 174 L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~ 216 (320)
T PF00331_consen 174 LFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAG 216 (320)
T ss_dssp EEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETT
T ss_pred EEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCC
Confidence 998642 11110 0112111 1346789999998643
No 41
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0053 Score=62.52 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEcCCCC---CCCCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEec
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDLHAAP---GSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELI 341 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDlH~~p---G~qng~~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~ 341 (534)
.++.-|++++.|++|||.+ |..+ .+|...+.++. .+. +...++..+.+..+.+||++. +..||++
T Consensus 80 ~Fe~AD~ia~FAr~h~m~l----hGHtLvW~~q~P~W~~~~-----e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVV 148 (345)
T COG3693 80 NFEAADAIANFARKHNMPL----HGHTLVWHSQVPDWLFGD-----ELSKEALAKMVEEHIKTVVGRYKGS--VASWDVV 148 (345)
T ss_pred CccchHHHHHHHHHcCCee----ccceeeecccCCchhhcc-----ccChHHHHHHHHHHHHHHHHhccCc--eeEEEec
Confidence 4788899999999999986 5432 22333332221 122 345567778889999999997 7889999
Q ss_pred cCCCCCCCC--hHHHH------HHHHHHHHHHHhcCCceEEEEeCC-CCCCCh---------hhhhcccCCCceEEEEEe
Q 009475 342 NEPLAPGVA--LDTLK------SYYKAGYDAVRKYTSTAYVIMSNR-LGPADH---------KELLSFASGLSRVVIDVH 403 (534)
Q Consensus 342 NEP~~~~~~--~~~~~------~~~~~~~~aIR~~~p~~~Iiv~~~-~~~~~~---------~~~~~~~~~~~nvv~d~H 403 (534)
|||.....+ ...|. ++++.++..-|+.+|+..+++.+. ...... ..+..--.+-+.+-+..|
T Consensus 149 NE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH 228 (345)
T COG3693 149 NEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSH 228 (345)
T ss_pred ccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeee
Confidence 999973211 12232 578889999999999999888653 211111 111221245678999999
No 42
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.92 E-value=0.13 Score=56.72 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=83.5
Q ss_pred HhCCccEEEeCccccccc------CCCCCC----CCC--Cc----hHHHHHHHHHHHHHCCCEEEEEcCCCCCCC--CCC
Q 009475 237 SSNGINAVRIPVGWWIAN------DPTPPK----PFV--GG----SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ--NGN 298 (534)
Q Consensus 237 a~~G~N~VRIPv~~w~~~------~~~~~~----~~~--~~----~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~q--ng~ 298 (534)
..+|++.+|+||+--.+. ++.+.+ .|. .+ .+..|+++++. ..+|+++-.--.+|+.. |+.
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~--~~~lki~aSpWSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAI--NPNLKIFASPWSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHH--HTT-EEEEEES---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHh--CCCcEEEEecCCCCHHHccCCc
Confidence 458999999999742221 111111 111 00 12333333332 23599999999999753 222
Q ss_pred CC-CCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-eEEEEEeccCCCCC----------CCChHHHHHHHHH-HHHHH
Q 009475 299 EH-SATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP----------GVALDTLKSYYKA-GYDAV 365 (534)
Q Consensus 299 ~~-sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~vlg~eL~NEP~~~----------~~~~~~~~~~~~~-~~~aI 365 (534)
-. .|...+.. .+.+.+.+.++..+..+.|+.+. .|.++-+-|||... ..+++...+|.+. +..++
T Consensus 188 ~~g~g~l~g~~--~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l 265 (496)
T PF02055_consen 188 MNGGGSLKGSL--GDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPAL 265 (496)
T ss_dssp SCSS-BBSCGT--TSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHH
T ss_pred CcCCCccCCCC--CchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 11 12111111 02455666777777777788764 68899999999841 1346778888876 88899
Q ss_pred HhcCC--ceEEEE-eC-CCCCCCh-hhhhccc-CCCceEEEEEeeccc
Q 009475 366 RKYTS--TAYVIM-SN-RLGPADH-KELLSFA-SGLSRVVIDVHYYNL 407 (534)
Q Consensus 366 R~~~p--~~~Iiv-~~-~~~~~~~-~~~~~~~-~~~~nvv~d~H~Y~~ 407 (534)
|+.++ +..|++ .. .+...++ ...+.-+ ...---.+.+|.|..
T Consensus 266 ~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g 313 (496)
T PF02055_consen 266 RKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGG 313 (496)
T ss_dssp HTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTC
T ss_pred HhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCC
Confidence 99876 555555 32 2211111 1222111 111236789999954
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0069 Score=69.87 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 308 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~ 308 (534)
.+.|++.||++|+|+||.- +| |.. ++..+.|.++||+||-|.-... |... ..
T Consensus 323 ~~~dl~lmk~~n~N~vRts-Hy----------P~~-------~~~ydLcDelGllV~~Ea~~~~-------~~~~--~~- 374 (808)
T COG3250 323 MERDLKLMKEANMNSVRTS-HY----------PNS-------EEFYDLCDELGLLVIDEAMIET-------HGMP--DD- 374 (808)
T ss_pred HHHHHHHHHHcCCCEEEec-CC----------CCC-------HHHHHHHHHhCcEEEEecchhh-------cCCC--CC-
Confidence 3679999999999999984 11 222 5677899999999999875431 1000 11
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 309 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 309 ~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
+...+...+=.+.|.+|-|+||+|+.|.+.||+.... . ...++..+.+.++++.+-.+
T Consensus 375 ---~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~-~-------~~~~~~~~k~~d~~r~~~~~ 432 (808)
T COG3250 375 ---PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGS-N-------HWALYRWFKASDPTRPVQYE 432 (808)
T ss_pred ---cchhHHHHHHHHHHHHhccCCCcEEEEeccccccCcc-c-------cHHHHHHHhhcCCccceecc
Confidence 2335566677788899999999999999999987522 1 12334555566666666554
No 44
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=96.62 E-value=0.57 Score=54.98 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEc---CCCCCCCCC---CC-----------CCCCCCCCCCCC------hhhHHHHHHHH
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNG---NE-----------HSATRDGFQEWG------DSNVADTVAVI 322 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~qng---~~-----------~sg~~~g~~~W~------~~~~~~~~~~w 322 (534)
....|+++|+.|.++||+||+|+ |...++... .+ ..|.......+. +...+..++..
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998 765532210 00 001100001111 22234445555
Q ss_pred HHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 009475 323 DFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (534)
Q Consensus 323 ~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~ 381 (534)
+..++.|+=+. +-||++..- + ..+++++.+++|+++|+.+ +++.+|.
T Consensus 482 ~~W~~ey~VDG--FRfDlm~~~-----~----~~f~~~~~~~l~~i~pdi~-l~GEgW~ 528 (898)
T TIGR02103 482 VVWAKDYKVDG--FRFDLMGHH-----P----KAQMLAAREAIKALTPEIY-FYGEGWD 528 (898)
T ss_pred HHHHHHcCCCE--EEEechhhC-----C----HHHHHHHHHHHHHhCCCEE-EEecCCC
Confidence 56666665432 237777543 2 4466777788999999755 4455564
No 45
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=96.11 E-value=0.026 Score=54.37 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=85.5
Q ss_pred eeeEecccceeeccccCCcCCcCCCCCcccccceeEEeeeeceeEEEeecCCCceEEeccCCC---CCcceEEEEEecCc
Q 009475 34 LRAVNLGNWLVTEGWMKPSRFDDIPNKDLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSA---SGWETFRLWRVNET 110 (534)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~---~~wetf~~~~~~~~ 110 (534)
-..||-|||--.- .+++ +-| .|.++ +.-|.||.|+-.|..-|-+--+.. .+=|.|.+..++++
T Consensus 29 ~~~~~~g~w~~~~-----~~~~-------~~g-~v~ie-~~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki~ds 94 (246)
T KOG3962|consen 29 EDAVNDGGWWDAN-----ELND-------IEG-TVAIE-IDDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKISDS 94 (246)
T ss_pred hhhhcCCcceecc-----ccce-------eeE-EEEEE-ecCceEEEEEecCceeeccCCccccCCCchhhEEEEEccCc
Confidence 3678999985432 2222 334 66666 455888888666666655544333 46689999999999
Q ss_pred eEEEEeeCCcEEEeecCCCCceEEEeecCCCCCceEEEEEeCCCCceEEEEecCCceEEe
Q 009475 111 FYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQA 170 (534)
Q Consensus 111 ~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~EtF~ivr~~~~~~~v~i~~~nG~~Lq~ 170 (534)
+++|++.=|+|++++. .+.|++...++|+-|.|..|--. .++.+-+.||.+...
T Consensus 95 rIaLKsGyGKYlsins---dglvvg~qeAvG~~EQw~~vFq~---~r~a~~as~s~~~~~ 148 (246)
T KOG3962|consen 95 RIALKSGYGKYLSINS---DGLVVGRQEAVGSREQWEPVFQE---GRMALLASNSCFIRC 148 (246)
T ss_pred eEEecccccceeeecC---CccEEEehhhcCcHhhchhhhhc---cceEEeeccceeEEe
Confidence 9999999999999997 44799999999999999866542 357777777766654
No 46
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.09 E-value=0.11 Score=58.91 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCccEEEe-Cccc------ccccCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc---CCCCCCCC-
Q 009475 230 DEDFKFLSSNGINAVRI-PVGW------WIANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN- 296 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~------w~~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~qn- 296 (534)
++-++.|+++|+|+|=| ||.. |-. ++.......+ +..+.|+++|+.|.++||+||||+ |..+....
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY-~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 238 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGY-QVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGL 238 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchh
Confidence 44458999999999999 8742 211 1110000011 467899999999999999999997 65442210
Q ss_pred ----C---CCCCCCCC-CCCCCC--------hhhHHHHHHHHHHHHHHhcCCCeEEEEEec---------cCCCC-----
Q 009475 297 ----G---NEHSATRD-GFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI---------NEPLA----- 346 (534)
Q Consensus 297 ----g---~~~sg~~~-g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~---------NEP~~----- 346 (534)
+ ..+..... ....|. +..++..++..+...+.|.=+. +-+|.+ .+|..
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG--~R~D~v~~~~~~~~~~~~~~~~~~~ 316 (613)
T TIGR01515 239 AEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDG--LRVDAVASMLYLDYSRDEGEWSPNE 316 (613)
T ss_pred hccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcE--EEEcCHHHhhhhccccccccccccc
Confidence 0 00000000 112343 3334455566666666654321 112221 12210
Q ss_pred C-CCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 347 P-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 347 ~-~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
. +.....-..+.+++.+.||+..|+.++|-+.
T Consensus 317 ~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 349 (613)
T TIGR01515 317 DGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEE 349 (613)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 0 0011234578899999999999998888764
No 47
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.05 E-value=0.13 Score=58.42 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCccEEEe-Ccc------cccccCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc---CCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNG 297 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~w~~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~qng 297 (534)
++-++.|+++|+|+|=| ||. .|-. ++.......+ +..+.|+++|+.|.++||+||||+ |..+... +
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY-~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~-~ 251 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGY-QLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDD-G 251 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCCCC-CCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc-c
Confidence 44469999999999986 652 1211 1111000111 568899999999999999999997 5443211 1
Q ss_pred CC-CCC--------C-CCCCCCCC--------hhhHHHHHHHHHHHHHHhcCCCeEEEEEec-cC------------C--
Q 009475 298 NE-HSA--------T-RDGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE------------P-- 344 (534)
Q Consensus 298 ~~-~sg--------~-~~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~-NE------------P-- 344 (534)
.. ..+ . ......|. +..++..++..+...+.|.=+. +-+|.. +. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG--~R~D~~~~~~~~d~~~~~~~~~~~ 329 (633)
T PRK12313 252 LAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDG--LRVDAVSNMLYLDYDEEGEWTPNK 329 (633)
T ss_pred ccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcE--EEEcChhhhhhcccccccCcCCcc
Confidence 00 000 0 00112342 3334445555555555554221 112211 11 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 345 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.....+. .-..+.+.+.+.||+..|+.++|-+.
T Consensus 330 ~~~~~~~-~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 330 YGGRENL-EAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred cCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 1111111 33578899999999999998777664
No 48
>PLN02877 alpha-amylase/limit dextrinase
Probab=95.92 E-value=2.1 Score=50.59 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEc---CCCC
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDL---HAAP 292 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDl---H~~p 292 (534)
....++++|+.|.++||+||+|+ |...
T Consensus 464 RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 35679999999999999999997 6643
No 49
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=95.77 E-value=0.18 Score=53.24 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=61.0
Q ss_pred HHHHHHHCCCEEEEEcC-CCCCC--CCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-eEEEEEeccCCCCC-
Q 009475 273 AFDWAEKYGVKVIVDLH-AAPGS--QNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP- 347 (534)
Q Consensus 273 ~v~~a~~~Gl~VIlDlH-~~pG~--qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~vlg~eL~NEP~~~- 347 (534)
+++.|+++|+..++-+- .+|.. .||...++ ..+...-.+...+.+..++..++++|+... .+--++.+|||...
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~-~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGG-DDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S--SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCC-CccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 67899999999877554 44442 23332211 111100015778899999999999996653 56678999999863
Q ss_pred --------CCChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 348 --------GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 348 --------~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
..+.+...++++.+..++++.+.+..|+++
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~ 225 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISAC 225 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEec
Confidence 124567788999999999999988777775
No 50
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.69 E-value=0.29 Score=54.59 Aligned_cols=137 Identities=19% Similarity=0.268 Sum_probs=73.5
Q ss_pred HHHHHHHhCCccEEEe-Ccc------cccccCCCC----CCCCCCchHHHHHHHHHHHHHCCCEEEEEc---CCCCCCCC
Q 009475 231 EDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN 296 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~------~w~~~~~~~----~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~qn 296 (534)
+.++.|+++|+|+|=| ||. .|- .++.. ...| +..+.|+++|+.|.++||+||||+ |..+.+..
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~G-Y~~~~~~~~~~~~--G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~ 191 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWG-YDGVLPYAPHNAY--GGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY 191 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCC-CCccCcccccccc--CCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc
Confidence 3489999999999997 552 121 11110 0112 468899999999999999999997 65443211
Q ss_pred CCCCCC--CCCCCCCCC-------h---hhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHH
Q 009475 297 GNEHSA--TRDGFQEWG-------D---SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDA 364 (534)
Q Consensus 297 g~~~sg--~~~g~~~W~-------~---~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~a 364 (534)
-..... .......|. + ..++.+++..+.-.+.|+=+. +-+|+...-.. . .-..+.+++.++
T Consensus 192 ~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDG--fR~D~~~~~~~--~---~~~~~l~~~~~~ 264 (542)
T TIGR02402 192 LPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDG--LRLDAVHAIAD--T---SAKHILEELARE 264 (542)
T ss_pred ccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcE--EEEeCHHHhcc--c---cHHHHHHHHHHH
Confidence 000000 000112232 2 223344444444444443221 12343332211 0 114678888888
Q ss_pred HHhcCCc---eEEEEe
Q 009475 365 VRKYTST---AYVIMS 377 (534)
Q Consensus 365 IR~~~p~---~~Iiv~ 377 (534)
+|++.|+ .++|-+
T Consensus 265 ~~~~~p~~~~~~li~E 280 (542)
T TIGR02402 265 VHELAAELRPVHLIAE 280 (542)
T ss_pred HHHHCCCCceEEEEEe
Confidence 9998887 454444
No 51
>PLN02161 beta-amylase
Probab=95.60 E-value=0.18 Score=54.61 Aligned_cols=126 Identities=15% Similarity=0.292 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~~g~ 307 (534)
+..++.||++|+.-|=++| ||...+...+..| .+...+++++.+++.|||+ |+.+|...|.- |. .. ....
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNv-Gd-~~--~IpL 191 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHSNMHLF-GG-KG--GISL 191 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCCC-CC-cc--CccC
Confidence 7899999999999999999 7777776566677 5888999999999999985 66778754421 11 11 1233
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CeEEEEEeccCCCCCCCC-hHHHHHHHHHHHHHHHhcCCceE
Q 009475 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~vlg~eL~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
|.|- |+...+ -|+|. +.-+.+-+-|+|...+.+ .+.+.+|++..-+.....-.+.+
T Consensus 192 P~WV----------~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I 257 (531)
T PLN02161 192 PLWI----------REIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVI 257 (531)
T ss_pred CHHH----------HhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCce
Confidence 4441 111111 13332 345667777999876543 46788888887777776543433
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=95.60 E-value=0.043 Score=51.53 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCccEEEeCcccccc--------cCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIA--------NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~--------~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
.+.++.|+++|+|+|-|+=-+... .++.......+ +..+.|+++|+.|+++||+||+|+=
T Consensus 22 ~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345779999999999985322111 11111111111 5689999999999999999999983
No 53
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.56 E-value=4 Score=46.30 Aligned_cols=60 Identities=27% Similarity=0.515 Sum_probs=40.6
Q ss_pred HHHHHHHhCCccEEEe-Cccc--------------ccccCCCC---C------CCCCC-chHHHHHHHHHHHHHCCCEEE
Q 009475 231 EDFKFLSSNGINAVRI-PVGW--------------WIANDPTP---P------KPFVG-GSSKVLDNAFDWAEKYGVKVI 285 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~--------------w~~~~~~~---~------~~~~~-~~l~~ld~~v~~a~~~Gl~VI 285 (534)
+-++.|+++|+|+|=| ||.- |-. ++.. + .|..+ +..+.|+++|+.|.++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY-~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGY-DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCC-CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999987 5531 111 1100 0 01111 135889999999999999999
Q ss_pred EEc---CCC
Q 009475 286 VDL---HAA 291 (534)
Q Consensus 286 lDl---H~~ 291 (534)
||+ |..
T Consensus 247 lDvV~NH~~ 255 (605)
T TIGR02104 247 MDVVYNHTY 255 (605)
T ss_pred EEEEcCCcc
Confidence 997 654
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.49 E-value=0.26 Score=56.94 Aligned_cols=146 Identities=16% Similarity=0.245 Sum_probs=78.9
Q ss_pred CHHHHHHHHhCCccEEEe-Cccc------ccccCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc---CCCCCCC-
Q 009475 229 TDEDFKFLSSNGINAVRI-PVGW------WIANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 295 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~~------w~~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~q- 295 (534)
.++-+..|+++|+|+|=| ||.- |- .++.......+ +..+.|+++|+.|.++||+||||+ |..+...
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~G-Y~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 346 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWG-YQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG 346 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 344468999999999987 5521 11 11111000111 468899999999999999999997 6543211
Q ss_pred -CCCC------CCCCCC-CCCCCC--------hhhHHHHHHHHHHHHHHhcCCCeEEEEEec-cC---------------
Q 009475 296 -NGNE------HSATRD-GFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE--------------- 343 (534)
Q Consensus 296 -ng~~------~sg~~~-g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~-NE--------------- 343 (534)
...+ +..... ..+.|. +..++..++..+...++|.=+. +-+|.+ ++
T Consensus 347 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG--~R~D~v~~~~~~~~~~~~g~~~~~ 424 (726)
T PRK05402 347 LARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDG--LRVDAVASMLYLDYSRKEGEWIPN 424 (726)
T ss_pred hhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcE--EEECCHHHhhhccccccccccccc
Confidence 0000 100000 122342 3333444455555555543221 112311 22
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 344 PLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 344 P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
+.. +.....-..+.+.+.+.||+..|+.++|-+.
T Consensus 425 ~~~-~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~ 458 (726)
T PRK05402 425 IYG-GRENLEAIDFLRELNAVVHEEFPGALTIAEE 458 (726)
T ss_pred ccc-CcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 111 1111234678899999999999998877763
No 55
>PLN02803 beta-amylase
Probab=95.45 E-value=0.18 Score=54.79 Aligned_cols=129 Identities=17% Similarity=0.406 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~~g~ 307 (534)
+..++.||++|+.-|=++| ||...+...+..| .+...+++++.+++.|||+ |+.+|...|. -|+. .....
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGN-VGD~---~~IpL 181 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQCGGN-VGDS---CSIPL 181 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCC-CCCc---ccccC
Confidence 6789999999999999999 7777776656677 5888999999999999985 6677875442 1111 11223
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CeEEEEEeccCCCCCCCC-hHHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~vlg~eL~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
|.| +|+...+ -|+|. ..-+.+-+-|+|...+.+ .+.+.+|++..-+.....-.+.++-|
T Consensus 182 P~W----------V~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI 250 (548)
T PLN02803 182 PPW----------VLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEI 250 (548)
T ss_pred CHH----------HHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 434 2221111 13332 334556677889875543 46777888777777666443444333
No 56
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=95.38 E-value=0.48 Score=54.54 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=80.0
Q ss_pred CHHHHHHHHhCCccEEEe-Ccc------cccccCCCC---CCCCCCchHHHHHHHHHHHHHCCCEEEEEc---CCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRI-PVG------WWIANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 295 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~------~w~~~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~q 295 (534)
+++-+..|+++|+|+|=| ||. .|.. ++.. +.+. -+..+.|+++|+.|.++||+||||+ |......
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY-~~~~~fa~~~~-~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGY-HVTNFFAVSSR-SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCc-CcccCcccccc-cCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence 356799999999999987 442 1111 1110 1111 1457889999999999999999997 4433211
Q ss_pred ---CCC-------CCCCCCCCCCCCC--------hhhHHHHHHHHHHHHHHhcCC-------CeEE------EEEe---c
Q 009475 296 ---NGN-------EHSATRDGFQEWG--------DSNVADTVAVIDFLAARYANR-------PSLA------AIEL---I 341 (534)
Q Consensus 296 ---ng~-------~~sg~~~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~-------~~vl------g~eL---~ 341 (534)
+.+ .+.+...-...|. +..++..++..+...++|.=+ ..++ +.+- .
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~ 410 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNY 410 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCc
Confidence 111 1111110112343 233344445555555555321 1121 0010 1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 342 NEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 342 NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
||-.....+. .-..|++.+-+.|++..|+.+.|.++
T Consensus 411 ~~~~g~~~d~-~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 411 NEYFGMATDV-DAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred ccccCCccCh-HHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3322212232 33568889999999999998888764
No 57
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.28 E-value=0.57 Score=52.98 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCccEEEe-Ccccc---cccCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRI-PVGWW---IANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~w---~~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+-++.|+++|+|+|=| ||.-- +..++..-...++ |..+.|+++|+.|+++||+||||+
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999998 44210 0001111111122 578999999999999999999998
No 58
>PLN02801 beta-amylase
Probab=95.20 E-value=0.21 Score=54.12 Aligned_cols=121 Identities=23% Similarity=0.496 Sum_probs=80.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~~g~ 307 (534)
++.++.||++|+.-|=++| ||...+...+..| .++..+++++.+++.||++ |+.+|...|. -|++ ....-
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGN-VGD~---~~IpL 111 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQCGGN-VGDA---VNIPI 111 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecccCCC-CCCc---ccccC
Confidence 6789999999999999999 7777666556667 5888999999999999985 6777875442 1111 11223
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcC-----CCeEEEEEeccCCCCCCCC-hHHHHHHHHHHHHHHHhc
Q 009475 308 QEWGDSNVADTVAVIDFLAA----RYAN-----RPSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKY 368 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~-----~~~vlg~eL~NEP~~~~~~-~~~~~~~~~~~~~aIR~~ 368 (534)
|.| +|+...+ -|+| ++.-+.+-+-|+|...+.+ .+.+.+|++..-+.....
T Consensus 112 P~W----------V~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~ 172 (517)
T PLN02801 112 PQW----------VRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADF 172 (517)
T ss_pred CHH----------HHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 434 1111111 1333 2345667777999876544 477778887777777664
No 59
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=94.81 E-value=0.15 Score=54.10 Aligned_cols=127 Identities=19% Similarity=0.439 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~~g~ 307 (534)
+..++.||++|+..|=++| ||...+...+..| .+...+++++.+++.||++ |+.+|...|.- |++ ....-
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~cGgNv-gD~---~~IpL 90 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQCGGNV-GDD---CNIPL 90 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSST-TSS---SEB-S
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeecCCCCC-CCc---cCCcC
Confidence 7899999999999999999 6767666555566 5889999999999999996 56778764421 111 01122
Q ss_pred CCCChhhHHHHHHHHHHHHH---HhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 308 QEWGDSNVADTVAVIDFLAA---RYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~---ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
|.| +|+..++ -|+|.....--|-+. |...+.+.+...+|++...+..+..- +.+.-|
T Consensus 91 P~W----------v~~~~~~~di~ytd~~G~rn~E~lS-p~~~grt~~~Y~dfm~sF~~~f~~~~-~~I~~I 150 (402)
T PF01373_consen 91 PSW----------VWEIGKKDDIFYTDRSGNRNKEYLS-PVLDGRTLQCYSDFMRSFRDNFSDYL-STITEI 150 (402)
T ss_dssp -HH----------HHHHHHHSGGEEE-TTS-EEEEEE--CTBTTBCHHHHHHHHHHHHHHCHHHH-TGEEEE
T ss_pred CHH----------HHhccccCCcEEECCCCCcCcceee-cccCCchHHHHHHHHHHHHHHHHHHH-hhheEE
Confidence 333 2222222 156655444455555 86555446777788877777776654 444333
No 60
>PLN00197 beta-amylase; Provisional
Probab=94.76 E-value=0.34 Score=52.96 Aligned_cols=129 Identities=17% Similarity=0.394 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~~g~ 307 (534)
+..++.||++|+.-|=++| ||...+...+..| .|..++++++.+++.|||+ |+.+|...|. -|+. .....
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHqCGGN-VGD~---~~IpL 201 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQCGGN-VGDS---CTIPL 201 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCC-CCCc---ccccC
Confidence 6789999999999999999 7777776666677 5888999999999999985 6677875442 1111 11233
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CeEEEEEeccCCCCCCC-ChHHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~vlg~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
|.| +++...+ -|+|. +.-+.+-.-|+|...+- +.+.+.+|++..-+.....=.+.++-|
T Consensus 202 P~W----------V~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI 270 (573)
T PLN00197 202 PKW----------VVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEI 270 (573)
T ss_pred CHH----------HHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEE
Confidence 444 1221111 13332 33455667788886543 356777777777777666423333333
No 61
>PLN02960 alpha-amylase
Probab=94.70 E-value=0.98 Score=52.55 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=80.8
Q ss_pred CHHHHHHHHhCCccEEEe-Cccc------ccccCCCC----CCCCCCchHHHHHHHHHHHHHCCCEEEEEc---CCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRI-PVGW------WIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGS 294 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~~------w~~~~~~~----~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~ 294 (534)
+++-+..|+++|+|+|=| ||.- |-. ++.. ...| +..+.|+++|+.|.++||+||||+ |..+..
T Consensus 419 ~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY-~~~~yfa~~~~y--Gtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~ 495 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGY-KVTNFFAVSSRF--GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADE 495 (897)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCCCccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCCcc
Confidence 455689999999999997 5521 111 1110 0112 457899999999999999999997 655532
Q ss_pred CCCC----------CCCCCCCCCCCCC--------hhhHHHHHHHHHHHHHHhcCC-------CeEEEEE--eccCCC--
Q 009475 295 QNGN----------EHSATRDGFQEWG--------DSNVADTVAVIDFLAARYANR-------PSLAAIE--LINEPL-- 345 (534)
Q Consensus 295 qng~----------~~sg~~~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~-------~~vlg~e--L~NEP~-- 345 (534)
.++. .+.+.......|. +...+..++..+...+.|.=+ .+++-.+ ...++.
T Consensus 496 ~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~ 575 (897)
T PLN02960 496 MVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDL 575 (897)
T ss_pred ccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcc
Confidence 1111 1111111122354 233344555555555555432 2222111 001111
Q ss_pred ----CCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 346 ----APGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 346 ----~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
....+ ..-..|++.+-+.|++..|+.++|.++
T Consensus 576 ~~~~n~~~d-~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 576 DEYCNQYVD-RDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred cccCCccCC-chHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 00111 234567888888899999998888874
No 62
>PLN02905 beta-amylase
Probab=94.66 E-value=0.35 Score=53.49 Aligned_cols=121 Identities=17% Similarity=0.402 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~~g~ 307 (534)
+..++.||++|+.-|=++| ||...+...+..| .|..++++++.+++.||++ |+.+|...|. -|+. .....
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHqCGGN-VGD~---~~IPL 360 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHECGGN-VGDD---VCIPL 360 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCC-CCCc---ccccC
Confidence 6889999999999999999 7777776666677 5888999999999999985 6677875442 1111 11223
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CeEEEEEeccCCCCCC-CChHHHHHHHHHHHHHHHhc
Q 009475 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPG-VALDTLKSYYKAGYDAVRKY 368 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~vlg~eL~NEP~~~~-~~~~~~~~~~~~~~~aIR~~ 368 (534)
|.| +|+...+ -|+|. +.-+.+-.-++|...+ .+.+.+.+|++..-+.....
T Consensus 361 P~W----------V~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 361 PHW----------VAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred CHH----------HHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444 2221111 13332 3445577779997644 34567778887777777664
No 63
>PLN02705 beta-amylase
Probab=94.59 E-value=0.44 Score=52.65 Aligned_cols=121 Identities=12% Similarity=0.306 Sum_probs=80.1
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCE--EEEEcCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~--VIlDlH~~pG~qng~~~sg~~~g~ 307 (534)
+..++.||++|+.-|=++| ||...+...+..| .|..++++++.+++.||+ ||+.+|...|. -| +. .....
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN-VG-D~--~~IPL 342 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHEYGGN-AS-GN--VMISL 342 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeeccCCC-CC-Cc--ccccC
Confidence 6789999999999999999 7777776556677 588899999999999999 56777875442 11 11 11223
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CeEEEEEeccCCCCCC-CChHHHHHHHHHHHHHHHhc
Q 009475 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPG-VALDTLKSYYKAGYDAVRKY 368 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~vlg~eL~NEP~~~~-~~~~~~~~~~~~~~~aIR~~ 368 (534)
|.|- |+...+ -|+|. ..-+.+-.-++|...+ .+.+.+.+|++..-+.....
T Consensus 343 P~WV----------~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWV----------LEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHH----------HHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4441 111110 13332 3445677779997543 44577788887777777764
No 64
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=94.50 E-value=0.4 Score=40.97 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=51.6
Q ss_pred cceeEEeeeeceeEEEeecCC---CceEEeccCCCCCcceEEEEEecCceEEEEee-CCcEEEeecC
Q 009475 65 GTQVQFMSTKFQKYIAAESGG---GTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQ 127 (534)
Q Consensus 65 g~~~~~~s~~~~~~~~a~~~g---~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~-n~~~v~~~~~ 127 (534)
+....|+++..|+||.+..++ |+.|+.-......-..|+|.+.++++|.|+.. .++.+.+.++
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGG
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCC
Confidence 457999999999999998864 66666554455888999999999999999988 6888888653
No 65
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=94.36 E-value=2.6 Score=43.90 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred ccceeeecccCCCcchhhhhhccCCCCCHHHHHHH-H----hCCccEEEeCccc---ccccCCCCCCCCCCchHHHHHHH
Q 009475 202 RGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFL-S----SNGINAVRIPVGW---WIANDPTPPKPFVGGSSKVLDNA 273 (534)
Q Consensus 202 ~~E~~~~~~~G~~~a~~~~~~hw~~~ite~d~~~i-a----~~G~N~VRIPv~~---w~~~~~~~~~~~~~~~l~~ld~~ 273 (534)
..+.|...++|.- -+..|--+.+...++.+ . ++||..+||||.- |....+ .+ +++.|..+
T Consensus 41 ~~~~Q~IrGFGg~-----~~~Aw~g~lsaa~l~t~Fgng~~~lg~si~Rv~I~~ndfsl~g~~---d~----w~kels~A 108 (433)
T COG5520 41 AAKHQVIRGFGGM-----NSSAWAGDLSAAQLETLFGNGANQLGFSILRVPIDSNDFSLGGSA---DN----WYKELSTA 108 (433)
T ss_pred hhhhceeeccccc-----ccchhhhhhHHHHHHHHhcCCccccCceEEEEEecccccccCCCc---ch----hhhhcccc
Confidence 3445555666520 11234444444444443 2 4899999999963 322111 11 22222222
Q ss_pred HHHHHHCCCEEEEEcCCCCCCC--CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-eEEEEEeccCCCCCC--
Q 009475 274 FDWAEKYGVKVIVDLHAAPGSQ--NGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG-- 348 (534)
Q Consensus 274 v~~a~~~Gl~VIlDlH~~pG~q--ng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~vlg~eL~NEP~~~~-- 348 (534)
+-+.++|++|+-.--..|.+. ++.-+.| ..+.-. .+....+.+++......++++. .+.++.+-|||....
T Consensus 109 -k~~in~g~ivfASPWspPa~Mktt~~~ngg-~~g~Lk--~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~ 184 (433)
T COG5520 109 -KSAINPGMIVFASPWSPPASMKTTNNRNGG-NAGRLK--YEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTY 184 (433)
T ss_pred -hhhcCCCcEEEecCCCCchhhhhccCcCCc-cccccc--hhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCC
Confidence 227789999999988888653 1111111 111110 2333445566666666677764 688899999998631
Q ss_pred ----CChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCC-CCh-hhhhcccCCC-ceEEEEEeeccc
Q 009475 349 ----VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP-ADH-KELLSFASGL-SRVVIDVHYYNL 407 (534)
Q Consensus 349 ----~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~-~~~-~~~~~~~~~~-~nvv~d~H~Y~~ 407 (534)
-.+++..+|+.+-.. .+..+.-|++.+.... .+. +..+.-+... .=.++..|.|..
T Consensus 185 d~~~wtpQe~~rF~~qyl~---si~~~~rV~~pes~~~~~~~~dp~lnDp~a~a~~~ilg~H~Ygg 247 (433)
T COG5520 185 DWCWWTPQEELRFMRQYLA---SINAEMRVIIPESFKDLPNMSDPILNDPKALANMDILGTHLYGG 247 (433)
T ss_pred CcccccHHHHHHHHHHhhh---hhccccEEecchhcccccccccccccCHhHhcccceeEeeeccc
Confidence 123444455444333 3333444555432211 111 1111111111 234789999953
No 66
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=94.18 E-value=1.3 Score=53.13 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEc---CCCCCCCC-----CC----CCCCCCC---CCCCCC---hhhHHHHHHHHHHHHHH
Q 009475 267 SKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN-----GN----EHSATRD---GFQEWG---DSNVADTVAVIDFLAAR 328 (534)
Q Consensus 267 l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~qn-----g~----~~sg~~~---g~~~W~---~~~~~~~~~~w~~lA~r 328 (534)
.+.|+++|+.|+++||+||||+ |..+.+.. +. +..|... +..... +..++..++..+..++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999997 65432210 00 0001000 000000 23344455666666666
Q ss_pred hcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 009475 329 YANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (534)
Q Consensus 329 yk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~ 380 (534)
|+=+. +-||++.. .+. .+++.+..++++++|+.+++ +.+|
T Consensus 634 y~VDG--FRfDl~g~-----~d~----~~~~~~~~~l~~~dP~~~li-GE~W 673 (1111)
T TIGR02102 634 FKVDG--FRFDMMGD-----HDA----ASIEIAYKEAKAINPNIIMI-GEGW 673 (1111)
T ss_pred cCCcE--EEEecccc-----CCH----HHHHHHHHHHHHhCcCEEEE-Eecc
Confidence 65432 23677753 222 34566677788889976554 4444
No 67
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.59 Score=50.22 Aligned_cols=149 Identities=18% Similarity=0.265 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCccEEEeCccc---cc-c-c---------C-----C------------CCCCCCCC----chHHHHHHHH
Q 009475 230 DEDFKFLSSNGINAVRIPVGW---WI-A-N---------D-----P------------TPPKPFVG----GSSKVLDNAF 274 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~---w~-~-~---------~-----~------------~~~~~~~~----~~l~~ld~~v 274 (534)
|..++.||=+|+|.+=-|.+= |. . + + | .-++|..+ ..+-.=+++|
T Consensus 81 eR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIi 160 (666)
T KOG2233|consen 81 EREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRII 160 (666)
T ss_pred HhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHH
Confidence 889999999999999888552 11 0 0 0 0 00123322 2344457899
Q ss_pred HHHHHCCCEEEEEcCC--C--------CCCC----CCCCCCCCCCCCC----CCChhhHHHHHHHHHHHHHHhcCCCeEE
Q 009475 275 DWAEKYGVKVIVDLHA--A--------PGSQ----NGNEHSATRDGFQ----EWGDSNVADTVAVIDFLAARYANRPSLA 336 (534)
Q Consensus 275 ~~a~~~Gl~VIlDlH~--~--------pG~q----ng~~~sg~~~g~~----~W~~~~~~~~~~~w~~lA~ryk~~~~vl 336 (534)
+...+.||.++|--.+ . |.+. ..+++..++.... ...+-.++---.+++.+.+.|++..+|.
T Consensus 161 drm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy 240 (666)
T KOG2233|consen 161 DRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIY 240 (666)
T ss_pred HHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCccccc
Confidence 9999999999985432 1 2211 0111111110000 0012345556679999999999999999
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 337 AIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 337 g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.-|.+||-..+...++-++...+.+|++.+++|++.+-++.+
T Consensus 241 ~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQg 282 (666)
T KOG2233|consen 241 SADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQG 282 (666)
T ss_pred ccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeec
Confidence 999999988777778889999999999999999998776653
No 68
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=93.98 E-value=0.16 Score=57.87 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhCCccEEEe-CcccccccC--------------C------CC---CCCCCCchHHHHHHHHHHHHHCC
Q 009475 226 SYITDEDFKFLSSNGINAVRI-PVGWWIAND--------------P------TP---PKPFVGGSSKVLDNAFDWAEKYG 281 (534)
Q Consensus 226 ~~ite~d~~~ia~~G~N~VRI-Pv~~w~~~~--------------~------~~---~~~~~~~~l~~ld~~v~~a~~~G 281 (534)
.+..+..++.|+++|+++|.| ||..+...+ | .+ ..|.-.+....|+.+|+.+.++|
T Consensus 199 gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaG 278 (697)
T COG1523 199 GLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAG 278 (697)
T ss_pred hhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcC
Confidence 334555699999999999996 775432211 1 00 01111236889999999999999
Q ss_pred CEEEEEc---CCCCC
Q 009475 282 VKVIVDL---HAAPG 293 (534)
Q Consensus 282 l~VIlDl---H~~pG 293 (534)
|.||||+ |.+.|
T Consensus 279 I~VILDVVfNHTae~ 293 (697)
T COG1523 279 IEVILDVVFNHTAEG 293 (697)
T ss_pred CEEEEEEeccCcccc
Confidence 9999998 87644
No 69
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=93.93 E-value=4.4 Score=40.74 Aligned_cols=209 Identities=17% Similarity=0.265 Sum_probs=123.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
..|++.|+..+. .||+ | . . .-..|..+...+.+.|++|+|-+--.+..+
T Consensus 66 ~sDLe~l~~~t~-~IR~---Y-~-s-----------DCn~le~v~pAa~~~g~kv~lGiw~tdd~~-------------- 114 (305)
T COG5309 66 ASDLELLASYTH-SIRT---Y-G-S-----------DCNTLENVLPAAEASGFKVFLGIWPTDDIH-------------- 114 (305)
T ss_pred HhHHHHhccCCc-eEEE---e-e-c-----------cchhhhhhHHHHHhcCceEEEEEeeccchh--------------
Confidence 679999999887 8998 1 1 1 123478888999999999999876433211
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-CCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCC-Chhh
Q 009475 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPA-DHKE 387 (534)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~~-~~~~ 387 (534)
...++ .+..++ .-|.+-+.|..+-+-||-... ..+.+++-++..++-.++.+.+-+.+|.-.+.|... +-.+
T Consensus 115 ---~~~~~--til~ay-~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~ 188 (305)
T COG5309 115 ---DAVEK--TILSAY-LPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPE 188 (305)
T ss_pred ---hhHHH--HHHHHH-hccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChH
Confidence 11222 122222 234566788889899998653 467899999999999999988887776655555321 1122
Q ss_pred hhcccCCCceEEEEEeecccCCCCCCCCchhhhHH-HHHhhhhhhhhhhhccCC--CeEEEeecccchhhhhhhhhhhhh
Q 009475 388 LLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNID-YVNNQRASDLGAVTTSNG--PLTFVGKSVTSALICKRCTQIRIR 464 (534)
Q Consensus 388 ~~~~~~~~~nvv~d~H~Y~~f~~~~~~~~~~~~i~-~i~~~~~~~l~~~~~~~g--p~~~vgEws~a~tdc~~~~~~~~~ 464 (534)
+.+ ..+.++.-.|.| | ..++..+... ++. .+++.+....+ +..+++|
T Consensus 189 l~~---~SDfia~N~~aY--w----d~~~~a~~~~~f~~----~q~e~vqsa~g~~k~~~v~E----------------- 238 (305)
T COG5309 189 LCQ---ASDFIAANAHAY--W----DGQTVANAAGTFLL----EQLERVQSACGTKKTVWVTE----------------- 238 (305)
T ss_pred Hhh---hhhhhhcccchh--c----cccchhhhhhHHHH----HHHHHHHHhcCCCccEEEee-----------------
Confidence 222 336788889999 3 2333333222 221 11222222222 2234333
Q ss_pred hcccccccccccccccCCCcccHHHHHHHHHHHHHHHhcCCCcEEEE
Q 009475 465 KRNLWLNFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYW 511 (534)
Q Consensus 465 ~~~~~~~~vGEws~~~~~~~a~~~~~~~~~~aq~~~~e~~~~GW~fW 511 (534)
.+||- =|+ .++...+++++...|++..+.+..+.+..-++-
T Consensus 239 --tGWPS-~G~---~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 239 --TGWPS-DGR---TYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred --ccCCC-CCC---ccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 01110 011 122234668888899999988888766665554
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.92 E-value=1.4 Score=53.30 Aligned_cols=145 Identities=21% Similarity=0.261 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCccEEEe-Ccc------cccccCCCC----CCCCCCchHHHHHHHHHHHHHCCCEEEEEc---CCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 295 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~w~~~~~~~----~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~q 295 (534)
++-++.|+++|+|+|=| ||. .|-. ++.. ...| +..+.|+++|+.|.++||+||||+ |..+...
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swGY-~~~~y~ap~~ry--Gt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWGY-QVTSYFAPTSRF--GHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCCC-CccccCCcCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 45579999999999976 662 1311 1111 1112 468899999999999999999997 5433210
Q ss_pred -----CC---CCCCCCC-CCCCCCC--------hhhHHHHHHHHHHHHHHhcCCC----eEEE---EEec-----cCCCC
Q 009475 296 -----NG---NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRP----SLAA---IELI-----NEPLA 346 (534)
Q Consensus 296 -----ng---~~~sg~~-~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~----~vlg---~eL~-----NEP~~ 346 (534)
.| ..|.... ...+.|. +...+..++......++|.=+. .|.. .+-- -.|+.
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~ 925 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNR 925 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccc
Confidence 00 0111111 1123453 2333444455555555554321 1110 0100 11221
Q ss_pred CC--CChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 347 PG--VALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 347 ~~--~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.+ .+ ..=..|.+++.+.|++..|+.++|.+.
T Consensus 926 ~gg~en-~~ai~fl~~ln~~v~~~~p~~~~IAEe 958 (1224)
T PRK14705 926 FGGREN-LEAISFLQEVNATVYKTHPGAVMIAEE 958 (1224)
T ss_pred cCCccC-hHHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 11 12 233578899999999999998877763
No 71
>PRK12568 glycogen branching enzyme; Provisional
Probab=93.86 E-value=1.6 Score=50.27 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=78.8
Q ss_pred CHHHHHHHHhCCccEEEe-Ccc------cccccCCCCCCCCC--CchHHHHHHHHHHHHHCCCEEEEEc---CCCCCCC-
Q 009475 229 TDEDFKFLSSNGINAVRI-PVG------WWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 295 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~------~w~~~~~~~~~~~~--~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~q- 295 (534)
.++-+..|+++|+|+|=| ||. .|-. ++....... -+..+.|+++|+.|.++||+||||+ |..+...
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY-~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~ 350 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWGY-QPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHG 350 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCCC-CCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccc
Confidence 355689999999999986 552 1211 111100001 1568899999999999999999997 5433210
Q ss_pred -CCCC------CCCCCCC-CCCCC--------hhhHHHHHHHHHHHHHHhcCCC-------eEEEEE--------eccCC
Q 009475 296 -NGNE------HSATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIE--------LINEP 344 (534)
Q Consensus 296 -ng~~------~sg~~~g-~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-------~vlg~e--------L~NEP 344 (534)
..++ +...+.+ ...|. +...+..++....-.++|.=+. .++-.+ +-|+-
T Consensus 351 l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~ 430 (730)
T PRK12568 351 LAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAH 430 (730)
T ss_pred cccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccccccccccc
Confidence 0011 1111111 22343 2333444444444445443221 111000 11221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 345 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.. ..+ ..-..+.+++-++|++..|+.++|-+.
T Consensus 431 gg-~en-~ea~~Fl~~ln~~v~~~~P~~~~IAEe 462 (730)
T PRK12568 431 GG-REN-LEAVAFLRQLNREIASQFPGVLTIAEE 462 (730)
T ss_pred CC-ccC-hHHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 10 111 134578999999999999998888763
No 72
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.68 E-value=7.9 Score=40.19 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred HHHHHHHHhCCccEEEeCcccc---cccC-CCCCC-CC--CCchHHHHHHHHHHHHHCCCEEEEEcCCCCCC----CCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWW---IAND-PTPPK-PF--VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS----QNGN 298 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w---~~~~-~~~~~-~~--~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~----qng~ 298 (534)
++-++.|++.|+|+|=|.|-=. ...+ ..+.. .. .......++++++.++++|||+|-=+..+... .+..
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe 95 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPE 95 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChh
Confidence 6788999999999999977310 0010 00100 00 11123668999999999999999655433210 0000
Q ss_pred C----CCCC--CC-CCCCCC----hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC-------------CCCCChHHH
Q 009475 299 E----HSAT--RD-GFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIELINEPL-------------APGVALDTL 354 (534)
Q Consensus 299 ~----~sg~--~~-g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~-------------~~~~~~~~~ 354 (534)
. ..|. ++ ....|- ++..+..+++-+.+|+. +...|. ||=+==|. ......+.+
T Consensus 96 ~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIq-fDYIRFP~~~~~~~l~y~~~~~~~~r~~aI 172 (316)
T PF13200_consen 96 WAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQ-FDYIRFPDEGRLSGLDYSENDTEESRVDAI 172 (316)
T ss_pred hEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEE-eeeeecCCCCcccccccCCCCCcchHHHHH
Confidence 0 0110 00 112355 23344445555555542 222222 22222222 111134788
Q ss_pred HHHHHHHHHHHHhcCCc
Q 009475 355 KSYYKAGYDAVRKYTST 371 (534)
Q Consensus 355 ~~~~~~~~~aIR~~~p~ 371 (534)
..|.+.+.+.++..+-.
T Consensus 173 ~~Fl~~a~~~l~~~~v~ 189 (316)
T PF13200_consen 173 TDFLAYAREELHPYGVP 189 (316)
T ss_pred HHHHHHHHHHHhHcCCC
Confidence 99999999999987654
No 73
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=93.52 E-value=0.57 Score=51.18 Aligned_cols=151 Identities=18% Similarity=0.227 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
+--++-.++.|+|++|+ |. ++-|. =|..-+.|.+.||-|.=|+.-+..- +|.
T Consensus 360 ~~LL~Sv~e~~MN~lRV----WG------GGvYE------sd~FY~lad~lGilVWQD~MFACAl------------YPt 411 (867)
T KOG2230|consen 360 EFLLDSVAEVGMNMLRV----WG------GGVYE------SDYFYQLADSLGILVWQDMMFACAL------------YPT 411 (867)
T ss_pred HHHHHHHHHhCcceEEE----ec------Ccccc------chhHHHHhhhccceehhhhHHHhhc------------ccC
Confidence 34456678999999999 52 12332 2566778999999999888754321 000
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-------------CCChHHHHHHHHHHHHHHH-hcCCceEEE
Q 009475 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------------GVALDTLKSYYKAGYDAVR-KYTSTAYVI 375 (534)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-------------~~~~~~~~~~~~~~~~aIR-~~~p~~~Ii 375 (534)
.+...+...+=.+.=+.|.+.+|.|+.|---||-... ....+...-+|++.+..+. +.++.++.|
T Consensus 412 -~~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi 490 (867)
T KOG2230|consen 412 -NDEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFI 490 (867)
T ss_pred -cHHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCce
Confidence 0234445555566778899999999999988886531 1122445556666555544 445778877
Q ss_pred EeCCCCCC--ChhhhhcccCCCceEEEEEeecccCCC
Q 009475 376 MSNRLGPA--DHKELLSFASGLSRVVIDVHYYNLFSN 410 (534)
Q Consensus 376 v~~~~~~~--~~~~~~~~~~~~~nvv~d~H~Y~~f~~ 410 (534)
++.+-.+. .+..+..- .+.+|--=|+|+|.-+.+
T Consensus 491 ~SSPsNG~ete~e~~VS~-NP~dn~~GDVHfYdy~~d 526 (867)
T KOG2230|consen 491 VSSPSNGKETEPENYVSS-NPQDNQNGDVHFYDYTKD 526 (867)
T ss_pred ecCCCCCcccCccccccC-CCccccCCceEeeehhhc
Confidence 76432221 12222221 455677779999986543
No 74
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=93.38 E-value=0.15 Score=51.45 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=39.7
Q ss_pred HHHHHHHhCCccEEEeCcccccc-----cCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIA-----NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~-----~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+.++.|+++|+|+|-|+=-+... ..+..-...++ +..+.|+++|+.|+++||+||+|+
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45889999999999995221100 00000000111 679999999999999999999998
No 75
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.03 E-value=3 Score=47.51 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCccEEEe-Ccc------cccccCCCC----CCCCCCchHHHHHHHHHHHHHCCCEEEEEc---CCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 295 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~w~~~~~~~----~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~q 295 (534)
++-+..|+++|+|+|=| ||. .|.. ++.. ...| +..+.|+++|+.|.++||+||||+ |..+..
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~--g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~- 246 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRL--GTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE- 246 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCc-Cccccccccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCcch-
Confidence 44467899999999986 552 1211 1110 0112 468899999999999999999997 543321
Q ss_pred CCCCC---------CCCCCC-CCCCC--------hhhHHHHHHHHHHHHHHhcCCC-------eEEEEEec---cCCCCC
Q 009475 296 NGNEH---------SATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIELI---NEPLAP 347 (534)
Q Consensus 296 ng~~~---------sg~~~g-~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-------~vlg~eL~---NEP~~~ 347 (534)
++..+ .....+ ...|. +..++..++..+.-.+.|.=+. .++-.+-- -.|...
T Consensus 247 ~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~ 326 (639)
T PRK14706 247 SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH 326 (639)
T ss_pred hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccccccc
Confidence 11100 000001 12343 2334444455555555554221 11101100 011111
Q ss_pred -CCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 348 -GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 348 -~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
+.....-..+.+.+-++||+..|+.++|.+.
T Consensus 327 gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~ 358 (639)
T PRK14706 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAEE 358 (639)
T ss_pred CCcccHHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1112344578899999999999998777753
No 76
>PLN00196 alpha-amylase; Provisional
Probab=92.54 E-value=0.4 Score=51.90 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCccEEEeCccccccc----CCCCCCCCCC---chHHHHHHHHHHHHHCCCEEEEEc---CCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIAN----DPTPPKPFVG---GSSKVLDNAFDWAEKYGVKVIVDL---HAAP 292 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~----~~~~~~~~~~---~~l~~ld~~v~~a~~~Gl~VIlDl---H~~p 292 (534)
.+.+..|+++|+++|=||=.+.... ++..-...++ |..+.|+++|+.|+++||+||+|+ |..+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~ 119 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTA 119 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCccc
Confidence 5678999999999999974332110 1110011111 567899999999999999999997 6543
No 77
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=92.49 E-value=1.6 Score=49.19 Aligned_cols=141 Identities=21% Similarity=0.275 Sum_probs=78.7
Q ss_pred CHHHHHHHHhCCccEEEe-Cccc------ccccCCC----CCCCCCCchHHHHHHHHHHHHHCCCEEEEEc---CCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRI-PVGW------WIANDPT----PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGS 294 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~~------w~~~~~~----~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~ 294 (534)
+++-+..||++|+++|=| ||.- |-. ++. |...| +.-+.|+++|+.|.++||.||||. |-.|.
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGY-q~~g~yAp~sry--GtPedfk~fVD~aH~~GIgViLD~V~~HF~~d- 242 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGY-QGTGYYAPTSRY--GTPEDFKALVDAAHQAGIGVILDWVPNHFPPD- 242 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCC-CcceeccccccC--CCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC-
Confidence 466788899999999996 6631 211 111 11223 568899999999999999999997 44332
Q ss_pred CCCCC---------CCCCCCC-CCCCC---hhh-HHHHHHHHHHHHH----Hh---------------cCCCeEEEEEec
Q 009475 295 QNGNE---------HSATRDG-FQEWG---DSN-VADTVAVIDFLAA----RY---------------ANRPSLAAIELI 341 (534)
Q Consensus 295 qng~~---------~sg~~~g-~~~W~---~~~-~~~~~~~w~~lA~----ry---------------k~~~~vlg~eL~ 341 (534)
.++.. +...+.+ .+.|. ..+ .....+++-.-|. +| .+...--+..+.
T Consensus 243 ~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~ 322 (628)
T COG0296 243 GNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVP 322 (628)
T ss_pred cchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccc
Confidence 12111 1111111 34565 111 3333333333322 22 221111223455
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEE
Q 009475 342 NEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVI 375 (534)
Q Consensus 342 NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Ii 375 (534)
||+.. -..-....+.+.+-+.|+...|..+.|
T Consensus 323 n~~gg--r~n~~a~efl~~~n~~i~~~~pg~~~i 354 (628)
T COG0296 323 NEYGG--RENLEAAEFLRNLNSLIHEEEPGAMTI 354 (628)
T ss_pred cccCC--cccHHHHHHhhhhhhhhcccCCCceee
Confidence 66653 223456678888999999887766433
No 78
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=91.98 E-value=3.1 Score=41.32 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCeEEEEEeccCCCCCC---CChHHHHHHHHHHHHHHHhcCCceEEEEeCCC--CCC------C-hhhh
Q 009475 321 VIDFLAARYANRPSLAAIELINEPLAPG---VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL--GPA------D-HKEL 388 (534)
Q Consensus 321 ~w~~lA~ryk~~~~vlg~eL~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~--~~~------~-~~~~ 388 (534)
.++.+.+.-.+.+.|+ .+|||.... .+++...+.+++.++.+|. +...|+ ++.. ... . ...|
T Consensus 55 ~~~~v~~~~~~~~~ll---~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~-sPa~~~~~~~~~~g~~Wl~~F 128 (239)
T PF11790_consen 55 WLANVQNAHPGSKHLL---GFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLG-SPAVAFTNGGTPGGLDWLSQF 128 (239)
T ss_pred HHHHHHhhccCcccee---eecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEE-CCeecccCCCCCCccHHHHHH
Confidence 4445544422334555 579999753 5677778888888888884 433333 3322 111 1 1233
Q ss_pred hcccC-CCceEEEEEeecccCCCCCCCCchhhhHHHHHhhhhhhhhhhhccCCCeEEEeecccchhhhhhhhhhhhhhcc
Q 009475 389 LSFAS-GLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGKSVTSALICKRCTQIRIRKRN 467 (534)
Q Consensus 389 ~~~~~-~~~nvv~d~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~gp~~~vgEws~a~tdc~~~~~~~~~~~~ 467 (534)
+.... ...--++++|.|.. ..+...+++.... +..++++.
T Consensus 129 ~~~~~~~~~~D~iavH~Y~~--------~~~~~~~~i~~~~--------~~~~kPIW----------------------- 169 (239)
T PF11790_consen 129 LSACARGCRVDFIAVHWYGG--------DADDFKDYIDDLH--------NRYGKPIW----------------------- 169 (239)
T ss_pred HHhcccCCCccEEEEecCCc--------CHHHHHHHHHHHH--------HHhCCCEE-----------------------
Confidence 33222 34567899999911 1222233333221 11234455
Q ss_pred cccccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Q 009475 468 LWLNFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRA 504 (534)
Q Consensus 468 ~~~~~vGEws~~~~~~~a~~~~~~~~~~aq~~~~e~~ 504 (534)
|-||++.......+.+....|++..+..+++.
T Consensus 170 -----ITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~ 201 (239)
T PF11790_consen 170 -----ITEFGCWNGGSQGSDEQQASFLRQALPWLDSQ 201 (239)
T ss_pred -----EEeecccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 45554432223456677889999888888763
No 79
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.84 E-value=3.9 Score=42.35 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=83.7
Q ss_pred HHHHHHHHhCCccEEEeCccccc--cc----CCCC----CCCCCCchHHHHHHHHHHHHHCCCEEEEEc----CCCCCC-
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWI--AN----DPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGS- 294 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~--~~----~~~~----~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl----H~~pG~- 294 (534)
++.++.++++|||+|=+-|-... +. .|.. +.+.....++.|..+|+.|+++||.|.-=+ -..+.+
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~ 101 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSH 101 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchhh
Confidence 56788899999999987664210 00 0100 011112258899999999999999986322 000000
Q ss_pred ---CCCC----CCCCCC--C----CCCCCC----hhhHHHHHHHHHHHHHHhcCCCeEEEEE-ec--------cC-----
Q 009475 295 ---QNGN----EHSATR--D----GFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIE-LI--------NE----- 343 (534)
Q Consensus 295 ---qng~----~~sg~~--~----g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~vlg~e-L~--------NE----- 343 (534)
.... .+.+.. . +...|. |+.++..+++.+.|+++|. -..|. +| .+ ++
T Consensus 102 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lDdy~yp~~~~g~~~~~~~~ 179 (311)
T PF02638_consen 102 ILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LDDYFYPPPSFGYDFPDVAA 179 (311)
T ss_pred hhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ecccccccccCCCCCccHHH
Confidence 0000 111100 0 112232 6777888999999999995 33332 22 00 00
Q ss_pred --------CCCCCCC-------hHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 344 --------PLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 344 --------P~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
|.....+ .+.+..+.++++++|+++.|+..+-+++
T Consensus 180 y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp 229 (311)
T PF02638_consen 180 YEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISP 229 (311)
T ss_pred HHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 1100011 2455688999999999999998887764
No 80
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.82 E-value=2.6 Score=38.06 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCccEEEeCcc---cccccCC--CCCCCCCCchHHHHHHHHHHHHHCCCEEEEE--cCC-------CCCC-
Q 009475 230 DEDFKFLSSNGINAVRIPVG---WWIANDP--TPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD--LHA-------APGS- 294 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~---~w~~~~~--~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD--lH~-------~pG~- 294 (534)
++-++.+++.|+|+|-|... -+.+.+. .+..|... .+.|.++|+.|++.||+|++= ++. -|..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~ 80 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWF 80 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCcee
Confidence 45577899999999999553 1222221 11233332 688999999999999999973 331 1221
Q ss_pred ---CCCCCCCCCCCCCCCCC-----hhhHHHHHHHHHHHHHHhcCCCeE
Q 009475 295 ---QNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSL 335 (534)
Q Consensus 295 ---qng~~~sg~~~g~~~W~-----~~~~~~~~~~w~~lA~ryk~~~~v 335 (534)
.+|....+.....+.|. ..+.+...+.++.+.++| +-..|
T Consensus 81 ~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y-~~DGi 128 (132)
T PF14871_consen 81 VRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY-DVDGI 128 (132)
T ss_pred eECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC-CCCEE
Confidence 11111111112222343 456778888889999998 33344
No 81
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=91.76 E-value=1.7 Score=39.93 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=65.9
Q ss_pred EEeeeeceeEEEeecCCCc---eEEeccC-CCCCcceEEEEE--ecCceEEEEee-CCcEEEeecCCCCceEEEeecCCC
Q 009475 69 QFMSTKFQKYIAAESGGGT---IVVANRT-SASGWETFRLWR--VNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAG 141 (534)
Q Consensus 69 ~~~s~~~~~~~~a~~~g~~---~~~anr~-~~~~wetf~~~~--~~~~~~~~~~~-n~~~v~~~~~g~~~~~~a~~~~~~ 141 (534)
-+||--|||||++-..+.. -|--+-+ ...++-.|++.. ..+|.+.+|.. +|||.-... +++--|.|.++.|.
T Consensus 8 V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p~ 86 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDPD 86 (153)
T ss_dssp EEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSHH
T ss_pred EEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCcc
Confidence 3555789999999772222 2333444 445999999999 77999999998 999999643 22336888887665
Q ss_pred -----CCce-EEEEEeC-CCCceEEEEec-CCceEEe
Q 009475 142 -----YSET-FQIVRKD-GDSSRVRLSAS-NGMFIQA 170 (534)
Q Consensus 142 -----~~Et-F~ivr~~-~~~~~v~i~~~-nG~~Lq~ 170 (534)
+..| |+-|+-+ ++.+.++++-. ||.|.+-
T Consensus 87 ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r 123 (153)
T PF07468_consen 87 EDQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKR 123 (153)
T ss_dssp H-TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEE
T ss_pred cccCCCCceEEEEEEecCCCccEEEEEecCCceEEEE
Confidence 3666 9987654 33456766664 6777763
No 82
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=91.49 E-value=1.4 Score=37.53 Aligned_cols=71 Identities=10% Similarity=0.268 Sum_probs=52.6
Q ss_pred eEEEEEec--CceEEEEee-CCcEEEeecCC--CCceEEEeecCCCCCceEEEEEeCCCCceEEEEec-CCceEEeccc
Q 009475 101 TFRLWRVN--ETFYNFRVN-NKQFIGLENQG--QGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISE 173 (534)
Q Consensus 101 tf~~~~~~--~~~~~~~~~-n~~~v~~~~~g--~~~~~~a~~~~~~~~EtF~ivr~~~~~~~v~i~~~-nG~~Lq~~g~ 173 (534)
.|++..+. ++.|.|+.. .|+++.+.+++ .|..|+.-...-.+.+.|+|++..++. ++|... +|..|.+.+.
T Consensus 4 ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~--y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 4 QWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGY--YRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSE--EEEEETSTTEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCe--EEEEECCCCcEEEECCC
Confidence 56777766 899999987 89999998642 233566655555889999999988765 556655 4888888754
No 83
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=91.08 E-value=0.54 Score=48.76 Aligned_cols=169 Identities=19% Similarity=0.195 Sum_probs=86.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccc-------c------------CCC------------CCCCC----CCchHHHHHHHH
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIA-------N------------DPT------------PPKPF----VGGSSKVLDNAF 274 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~-------~------------~~~------------~~~~~----~~~~l~~ld~~v 274 (534)
|..++.||=.|+|.+=.+++-..+ . .|. -+.|. .+...+.=++++
T Consensus 22 EreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl 101 (333)
T PF05089_consen 22 EREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQKKIL 101 (333)
T ss_dssp HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 889999999999988877752110 0 010 01232 234566667899
Q ss_pred HHHHHCCCEEEEEcCC--C--------CCCC---CCCCCCCCCCCCCCCC----hhhHHHHHHHHHHHHHHhcCCCeEEE
Q 009475 275 DWAEKYGVKVIVDLHA--A--------PGSQ---NGNEHSATRDGFQEWG----DSNVADTVAVIDFLAARYANRPSLAA 337 (534)
Q Consensus 275 ~~a~~~Gl~VIlDlH~--~--------pG~q---ng~~~sg~~~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~vlg 337 (534)
+..++.||..||=-.. . |+.. -+.+..- ..+.|. +-..+-...+.+...+.|+ ..++.+
T Consensus 102 ~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f---~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y~ 177 (333)
T PF05089_consen 102 DRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGF---CRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIYA 177 (333)
T ss_dssp HHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTE---E--EEE-SS--HHHHHHHHHHHHHHHHH----SEEE
T ss_pred HHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCC---CCCceeCCCCchHHHHHHHHHHHHHHhcC-CCceeC
Confidence 9999999999984321 0 1110 0000000 001111 2334556678888888898 778999
Q ss_pred EEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC------C-CCCCChhhhhcccCCCceEEEEE
Q 009475 338 IELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN------R-LGPADHKELLSFASGLSRVVIDV 402 (534)
Q Consensus 338 ~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~------~-~~~~~~~~~~~~~~~~~nvv~d~ 402 (534)
.|++||=..+....+.+.+..+.+++++++.+|+.+-++-+ . |.......++.-.+.+.=+|+|.
T Consensus 178 ~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~fW~~~~~~a~L~~Vp~~~mliLDL 249 (333)
T PF05089_consen 178 ADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDPFWTPNPIKALLSGVPKGRMLILDL 249 (333)
T ss_dssp --TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE--------BTTBS-HHHHTT-SGGGEEEEET
T ss_pred CCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcccccccccccCcchHHHHHcCCCCCCeEEEEc
Confidence 99999977655566779999999999999999997766643 1 32211234443323445566664
No 84
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=90.99 E-value=3.6 Score=37.08 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=65.6
Q ss_pred eeEEeeeeceeEEEeecCCCceEE-eccCC-CCCcceEEEEEecCceEEEEee-CCcEEEeecCCCCceEEEeecCC-C-
Q 009475 67 QVQFMSTKFQKYIAAESGGGTIVV-ANRTS-ASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTA-G- 141 (534)
Q Consensus 67 ~~~~~s~~~~~~~~a~~~g~~~~~-anr~~-~~~wetf~~~~~~~~~~~~~~~-n~~~v~~~~~g~~~~~~a~~~~~-~- 141 (534)
-|.|||- |||||.+...++-+.+ ..-+. ..+--.|++....+|.+.+|+. +|||.... ..=|.|.++.| .
T Consensus 7 ~V~FKg~-n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s----~~WI~a~s~d~~e~ 81 (139)
T smart00791 7 YVLFKGN-NQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS----HYWITADANDPDEN 81 (139)
T ss_pred EEEEEcC-CCceEEEEeecccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccC----CCEEEecCCCCccC
Confidence 5899998 9999999875544442 11111 2244467777788999999998 99999886 34688888777 2
Q ss_pred --CCceEEEEEeCCCCceEEEEe-cCCceEEe
Q 009475 142 --YSETFQIVRKDGDSSRVRLSA-SNGMFIQA 170 (534)
Q Consensus 142 --~~EtF~ivr~~~~~~~v~i~~-~nG~~Lq~ 170 (534)
..+-|+-+.-+++ .++++- -||.|+.-
T Consensus 82 ~sscTLF~Pv~~d~~--~i~lr~vq~~~~~~r 111 (139)
T smart00791 82 KSACTLFRPLYVEMK--KIRLLNVQLGHYTKR 111 (139)
T ss_pred CCcccEEeEEeccCc--eEEEEEecCCceEEe
Confidence 3445776664433 465554 36777653
No 85
>PLN02361 alpha-amylase
Probab=90.10 E-value=0.84 Score=48.95 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCccEEEeCccccccc----CCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIAN----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~----~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
++.++.|+++|+++|=||=.+.... .+..-...++ +..+.|+++|+.|+++||+||+|+
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 5678899999999999975432111 1110000111 578899999999999999999998
No 86
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=89.84 E-value=0.79 Score=50.34 Aligned_cols=62 Identities=29% Similarity=0.287 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCccEEEeCccccc-------ccCCCCCC---------CCCC--chHHHHHHHHHHHHHCCCEEEEEc---
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWI-------ANDPTPPK---------PFVG--GSSKVLDNAFDWAEKYGVKVIVDL--- 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~-------~~~~~~~~---------~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl--- 288 (534)
.+-++.|+++|+++|=|+=.+.. ..++.... ..++ |..+.|+++|+.|+++||+||+|+
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~N 104 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLN 104 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 34589999999999998532211 11111100 1122 578899999999999999999998
Q ss_pred CCC
Q 009475 289 HAA 291 (534)
Q Consensus 289 H~~ 291 (534)
|..
T Consensus 105 H~~ 107 (479)
T PRK09441 105 HKA 107 (479)
T ss_pred ccc
Confidence 654
No 87
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=89.71 E-value=2.3 Score=47.66 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
++-++++++.|+|+|-..|.|- .-+|.++ .|+=...-.|.+.|..|++.||+|+|=+--+ -+.-+++ | |.+-
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep~~g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPy--IcaEw~~-G---G~P~ 123 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEPSPG-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPY--ICAEWNF-G---GLPW 123 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccCCCC-cccccchhHHHHHHHHHHHCCeEEEecCCCe--EEecccC-C---Ccch
Confidence 7889999999999999999864 4456554 4442333446777999999999999865421 1111122 1 2332
Q ss_pred CC------------hhhHHHHHHHHHHHHHH----hc-CCCeEEEEEeccCCC
Q 009475 310 WG------------DSNVADTVAVIDFLAAR----YA-NRPSLAAIELINEPL 345 (534)
Q Consensus 310 W~------------~~~~~~~~~~w~~lA~r----yk-~~~~vlg~eL~NEP~ 345 (534)
|. +....++.++++.|..+ |. +-.-|+..++=||=.
T Consensus 124 wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 124 WLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 32 23344555566665553 32 223466689999954
No 88
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=89.61 E-value=0.67 Score=53.22 Aligned_cols=61 Identities=25% Similarity=0.517 Sum_probs=41.4
Q ss_pred HHHHHHHhCCccEEEe-Ccc---------------cccccCCCC---CC-CCCC-chHHHHHHHHHHHHHCCCEEEEEc-
Q 009475 231 EDFKFLSSNGINAVRI-PVG---------------WWIANDPTP---PK-PFVG-GSSKVLDNAFDWAEKYGVKVIVDL- 288 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~---------------~w~~~~~~~---~~-~~~~-~~l~~ld~~v~~a~~~Gl~VIlDl- 288 (534)
.-++.|+++|+|+|=| ||. +|-. ++.. ++ .|.. +..+.|+++|+.|+++||+||||+
T Consensus 188 ~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGY-d~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 188 AMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGY-NTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred chhHHHHHcCCCEEEECCcccCCccccccccCCCCccCc-CcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3589999999999987 552 1111 1110 01 1111 357889999999999999999997
Q ss_pred --CCCC
Q 009475 289 --HAAP 292 (534)
Q Consensus 289 --H~~p 292 (534)
|...
T Consensus 267 ~NHt~~ 272 (688)
T TIGR02100 267 YNHTAE 272 (688)
T ss_pred cCCccC
Confidence 6543
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=89.61 E-value=0.94 Score=51.84 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHHHHhCCccEEEeCcccccc-------------------cCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIA-------------------NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~-------------------~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+-++.|+++|+|+|=|+=-+... ..+......++ +..+.|+++|+.|+++||+||+|+
T Consensus 234 ~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 234 EKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45889999999999984111110 00000011122 578999999999999999999997
No 90
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=89.54 E-value=0.9 Score=50.71 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHHhCCccEEEeCccccccc-----CCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIAN-----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~~-----~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+-++.|+++|+|+|=|+=-+-... ++......++ +..+.|+++|+.|+++||+||+|+
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 458899999999998842111100 1100011122 568999999999999999999997
No 91
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=89.54 E-value=0.94 Score=50.70 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=39.6
Q ss_pred HHHHHHHhCCccEEEe-Ccccccc-----cCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 231 EDFKFLSSNGINAVRI-PVGWWIA-----NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~w~~-----~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+.++.|+++|+++|=| |+. ..- .++..-...++ +..+.|+++|+.|+++||+||+|+
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~-~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFY-VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HhhHHHHhCCCCEEEECCCC-CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999988 331 100 00100001111 568899999999999999999998
No 92
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.15 E-value=0.85 Score=52.07 Aligned_cols=61 Identities=26% Similarity=0.505 Sum_probs=41.3
Q ss_pred HHHHHHHhCCccEEEe-Ccc---------------cccccCCC---CCC-CCCC---chHHHHHHHHHHHHHCCCEEEEE
Q 009475 231 EDFKFLSSNGINAVRI-PVG---------------WWIANDPT---PPK-PFVG---GSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~---------------~w~~~~~~---~~~-~~~~---~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
.-++.|+++|+|+|=| ||. +|-. ++. .++ .|.. ..++.|+++|+.|.++||+||||
T Consensus 183 ~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGY-d~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 183 VMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGY-NPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred cchHHHHHcCCCEEEecCcccCCCcccccccccccccCc-ccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 3589999999999987 552 1211 110 001 1211 23678999999999999999999
Q ss_pred c---CCCC
Q 009475 288 L---HAAP 292 (534)
Q Consensus 288 l---H~~p 292 (534)
+ |...
T Consensus 262 vV~NHt~~ 269 (658)
T PRK03705 262 VVFNHSAE 269 (658)
T ss_pred EcccCccC
Confidence 7 6654
No 93
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=88.92 E-value=1.1 Score=49.94 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCccEEEeCcccccccC-----CCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIAND-----PTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~-----~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+-++.|+++|+++|=|+=-+..... +.....+++ +..+.|+++|+.|+++||+||+|+
T Consensus 30 ~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 30 IEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999999988322211100 000001112 578999999999999999999997
No 94
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=88.39 E-value=9.4 Score=33.61 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=67.4
Q ss_pred eEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEee-CCcEEEeecCCCCceEEEeecCCCCCceE
Q 009475 68 VQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETF 146 (534)
Q Consensus 68 ~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~-n~~~v~~~~~g~~~~~~a~~~~~~~~EtF 146 (534)
+||=+-+ |+||.-...| .|-+.++.-+....|.+..++.+.+.||.. .+.|+|.+.. +.|.+. ..+.+-..|
T Consensus 3 ~~Ly~~~-~~~L~i~~~g--~V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~---G~ly~~-~~~~~~C~F 75 (122)
T PF00167_consen 3 VQLYCRT-GYFLQINPNG--TVDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKC---GRLYGS-KNFNKDCVF 75 (122)
T ss_dssp EEEEETT-SEEEEEETTS--BEEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTT---SBEEEE-SSBTGGGEE
T ss_pred EEEEECC-CeEEEECCCC--eEeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECCC---CeEccc-cccCCCceE
Confidence 5665544 9999887655 677778777889999999999999999999 8999999963 357775 455567788
Q ss_pred EEEEeCCCCceEEEEec--CCceEEec
Q 009475 147 QIVRKDGDSSRVRLSAS--NGMFIQAI 171 (534)
Q Consensus 147 ~ivr~~~~~~~v~i~~~--nG~~Lq~~ 171 (534)
+-.-..+.- .+-.... .+.||-.+
T Consensus 76 ~e~~~~n~y-~~~~s~~~~~~~yla~~ 101 (122)
T PF00167_consen 76 REELLENGY-NTYESAKYGRGWYLAFN 101 (122)
T ss_dssp EEEEETTSE-EEEEESTTGTTEBCEBC
T ss_pred EEEEccCCE-EEEEeccCCccEEEEEC
Confidence 744333332 2333332 46666544
No 95
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=87.89 E-value=0.64 Score=45.10 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=59.3
Q ss_pred ccccceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEeeCCcEEEeecCCCCceEEEeecCCC
Q 009475 62 LLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAG 141 (534)
Q Consensus 62 ~~~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~ 141 (534)
++| .+|+||| -.|+||+-++-| .||+--.++|+=|+|..+..+ +.++|-++|++|..++.. +-.-+|.++.-.
T Consensus 91 i~d-srIaLKs-GyGKYlsinsdg--lvvg~qeAvG~~EQw~~vFq~-~r~a~~as~s~~~~~~e~--~d~~va~kt~t~ 163 (246)
T KOG3962|consen 91 ISD-SRIALKS-GYGKYLSINSDG--LVVGRQEAVGSREQWEPVFQE-GRMALLASNSCFIRCNEA--GDAEVASKTATE 163 (246)
T ss_pred ccC-ceEEecc-cccceeeecCCc--cEEEehhhcCcHhhchhhhhc-cceEEeeccceeEEechh--hchhhhcccCCC
Confidence 345 8999998 599999999876 789999999999999887765 667777789999999754 334677776554
Q ss_pred CC
Q 009475 142 YS 143 (534)
Q Consensus 142 ~~ 143 (534)
++
T Consensus 164 ~~ 165 (246)
T KOG3962|consen 164 EP 165 (246)
T ss_pred Cc
Confidence 43
No 96
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=86.97 E-value=0.86 Score=51.45 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCHHHHHHHHhCCccEEEe-Ccccc-------c-----ccCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 228 ITDEDFKFLSSNGINAVRI-PVGWW-------I-----ANDPTPPKPF----VGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRI-Pv~~w-------~-----~~~~~~~~~~----~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+||+++.+||.+|+|+|-| |+.-. . ++-| ...| .+.....++++|+.|.+.||-||||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFap--ssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAP--SSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecc--cccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4688899999999999997 44211 0 0111 0111 12347789999999999999999997
No 97
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=86.51 E-value=23 Score=36.42 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCccEEEeCcc----cccccC--CC---CCC---CCCC-c--hHHHHHHHHHHHHHCCCEEEEEcCC----
Q 009475 230 DEDFKFLSSNGINAVRIPVG----WWIAND--PT---PPK---PFVG-G--SSKVLDNAFDWAEKYGVKVIVDLHA---- 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~----~w~~~~--~~---~~~---~~~~-~--~l~~ld~~v~~a~~~Gl~VIlDlH~---- 290 (534)
++.++.|+..++|.+-+.+. |..-.. |. .+. ++.. + ..+.++++++.|+++||.||..+-.
T Consensus 19 k~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 19 KRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred HHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 45677789999999998775 321111 10 000 0111 1 5788999999999999999987632
Q ss_pred ------CCCCC-CCCCCCCCCCCCCCC--C-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHH
Q 009475 291 ------APGSQ-NGNEHSATRDGFQEW--G-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKA 360 (534)
Q Consensus 291 ------~pG~q-ng~~~sg~~~g~~~W--~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~ 360 (534)
.|.-. .....+........- . +...+-..++++.+++-|...---+|-| |........+.+..|.++
T Consensus 99 ~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgD---E~~~~~~~~~l~~~f~~~ 175 (303)
T cd02742 99 TAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGD---EAHFKQDRKHLMSQFIQR 175 (303)
T ss_pred HHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecce---ecCCCCCHHHHHHHHHHH
Confidence 12100 000000000000001 1 4556667788888888885433224433 322111234567788899
Q ss_pred HHHHHHhcC
Q 009475 361 GYDAVRKYT 369 (534)
Q Consensus 361 ~~~aIR~~~ 369 (534)
+.+.|++.+
T Consensus 176 ~~~~v~~~g 184 (303)
T cd02742 176 VLDIVKKKG 184 (303)
T ss_pred HHHHHHHcC
Confidence 999999886
No 98
>PLN02784 alpha-amylase
Probab=86.11 E-value=3.6 Score=47.89 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCccEEEeCccccccc----CCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc---CCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIAN----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL---HAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~----~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl---H~~ 291 (534)
.+.++.|+++|+++|=||=.+-... ++..-...++ +..+.|+++|+.|+++||+||+|+ |..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~a 594 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRC 594 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 5678999999999999975432111 1110000111 578899999999999999999997 654
No 99
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=85.96 E-value=1.5 Score=53.49 Aligned_cols=64 Identities=22% Similarity=0.414 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCccEEEe-Ccccccc--------------cCCCC---CC-CCCCchHHHHHHHHHHHHHCCCEEEEEc--
Q 009475 230 DEDFKFLSSNGINAVRI-PVGWWIA--------------NDPTP---PK-PFVGGSSKVLDNAFDWAEKYGVKVIVDL-- 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~w~~--------------~~~~~---~~-~~~~~~l~~ld~~v~~a~~~Gl~VIlDl-- 288 (534)
++.++.|+++|+|+|=| ||.-..- .++.. ++ .|..+..+.|+++|+.|+++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 46788999999999987 5532100 01100 01 1211267899999999999999999997
Q ss_pred -CCCCC
Q 009475 289 -HAAPG 293 (534)
Q Consensus 289 -H~~pG 293 (534)
|...+
T Consensus 270 NHt~~~ 275 (1221)
T PRK14510 270 NHTGES 275 (1221)
T ss_pred ccccCC
Confidence 66544
No 100
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=84.85 E-value=4.8 Score=36.76 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=45.5
Q ss_pred cCceEEEEeeCCcEEEeecCCCCceEEEeecCCCCCceEEEEEeCCCCceEEEEecCCceEEeccc
Q 009475 108 NETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISE 173 (534)
Q Consensus 108 ~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~EtF~ivr~~~~~~~v~i~~~nG~~Lq~~g~ 173 (534)
+...+.||+..++|+.||..|.+..+--++.+...-=+=++|. ++...|++++-.|.||-++..
T Consensus 6 d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~--~~~~~v~L~saYGrYL~as~~ 69 (142)
T PF04601_consen 6 DGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVP--GSPNYVRLRSAYGRYLAASDE 69 (142)
T ss_pred CCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEec--CCCCEEEEeeccCceEeccCC
Confidence 5677899999999999997755555555555444333334554 335689999999999988743
No 101
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=84.61 E-value=9.1 Score=41.04 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=77.2
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSATR 304 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~~ 304 (534)
+|++.++.+++.|+|.|=|.| ..+.+.. -... .....+.+.++++.+++.|+. |-+||- +.||
T Consensus 113 lt~e~l~~l~~~GvnrislGv--QS~~d~~-L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg----------- 178 (400)
T PRK07379 113 FDLEQLQGYRSLGVNRVSLGV--QAFQDEL-LALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH----------- 178 (400)
T ss_pred CCHHHHHHHHHCCCCEEEEEc--ccCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-----------
Confidence 689999999999999666554 2221110 0001 113567788899999999998 778975 4453
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCceE
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
...+.+.+-++.+.+ + +-..|-.+.|.-||..+ -.+.+...+.++.+.+.+++.+-.++
T Consensus 179 --------qt~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 248 (400)
T PRK07379 179 --------QTLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHY 248 (400)
T ss_pred --------CCHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcee
Confidence 123344444444433 2 23466667788888742 12345667788889999998876654
No 102
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=83.56 E-value=13 Score=39.27 Aligned_cols=123 Identities=20% Similarity=0.111 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
.++++.++.++++|+|.|-|.+.- +.+. --..+. ....+.+.++++.+++.|+. |.+|+- +.||
T Consensus 105 ~i~~e~l~~l~~~G~~rvslGvQS--~~~~-~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg---------- 171 (375)
T PRK05628 105 STSPEFFAALRAAGFTRVSLGMQS--AAPH-VLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPG---------- 171 (375)
T ss_pred CCCHHHHHHHHHcCCCEEEEeccc--CCHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC----------
Confidence 378999999999999988877642 2111 000111 13567788999999999998 889974 4453
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+.++.+.+ ++ -..+..|.+.=||..+ ..+.+.....++.+.+.+++.+-.+
T Consensus 172 ---------qt~~~~~~tl~~~~~-l~-~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 240 (375)
T PRK05628 172 ---------ESDDDWRASLDAALE-AG-VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (375)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Confidence 223445555554443 22 2345456666677642 1234556778888888888876554
Q ss_pred E
Q 009475 373 Y 373 (534)
Q Consensus 373 ~ 373 (534)
+
T Consensus 241 y 241 (375)
T PRK05628 241 Y 241 (375)
T ss_pred e
Confidence 3
No 103
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=83.55 E-value=3.3 Score=48.21 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCccEEEe-Ccccc-----cccCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRI-PVGWW-----IANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~w-----~~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+.+..|+++|+++|=| |+.-- ...+.......++ +..+.|+++++.|+++||+||+|+
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56788999999999977 33100 0001111111122 578999999999999999999997
No 104
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=83.27 E-value=11 Score=40.68 Aligned_cols=122 Identities=22% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCEEE-EEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVI-VDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~VI-lDlH-~~pG~qng~~~sg~ 303 (534)
.+|++.++.++++|+|.|-|.|.- +.+.. -..+ .....+.+.++++.++++|+.+| +|+- +.|+
T Consensus 138 ~lt~e~l~~l~~~G~~rvslGvQS--~~~~~-L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~---------- 204 (430)
T PRK08208 138 TTTAEKLALLAARGVNRLSIGVQS--FHDSE-LHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPG---------- 204 (430)
T ss_pred cCCHHHHHHHHHcCCCEEEEeccc--CCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 378999999999999977776632 21110 0001 11256788899999999999854 7863 4443
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+.++.+.+ .+ -+.+-.+.|.=||... ..+.+...++++.+.+...+.+=.+
T Consensus 205 ---------qt~e~~~~~l~~~~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 205 ---------QTHASWMESLDQALV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred ---------CCHHHHHHHHHHHHh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 223444455554443 22 2355556677777642 1133666778888888888876544
No 105
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=83.24 E-value=14 Score=39.04 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
.+|++.++.+++.|+|.|-|.+ ..+.+..- .... ....+.+.++++.++++|+. |-+|+- +.||
T Consensus 96 ~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 96 TFTEEKLKILKSMGVNRLSIGL--QAWQNSLL-KYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred cCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 4789999999999999666655 22211100 0011 12577788999999999996 668864 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+.++.+.+. + -+.|-.|.+.-+|..+ ..+.+.....++.+.+.+.+.+-.+
T Consensus 163 ---------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ 231 (374)
T PRK05799 163 ---------QTLEDWKETLEKVVEL-N-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQ 231 (374)
T ss_pred ---------CCHHHHHHHHHHHHhc-C-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 2345566666666542 2 2345456666677642 1234556677888888888877554
Q ss_pred E
Q 009475 373 Y 373 (534)
Q Consensus 373 ~ 373 (534)
+
T Consensus 232 y 232 (374)
T PRK05799 232 Y 232 (374)
T ss_pred E
Confidence 3
No 106
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=83.23 E-value=15 Score=38.74 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
-++++.++.+++.|+|.|=|++- .+.+..- ..+. ....+.+.++++.++++|+. |-+|+- +.||
T Consensus 100 ~lt~e~l~~lk~~G~nrisiGvQ--S~~d~vL-~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg---------- 166 (353)
T PRK05904 100 LITQSQINLLKKNKVNRISLGVQ--SMNNNIL-KQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI---------- 166 (353)
T ss_pred cCCHHHHHHHHHcCCCEEEEecc--cCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC----------
Confidence 46899999999999997777663 2211100 0011 13567888999999999987 888864 4453
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------CCChHHHHHHHHHHHHHHHhcCCceEEE
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTSTAYVI 375 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p~~~Ii 375 (534)
.+.+.+.+.++.+.+ .+ -+.+-.+.|.=||..+ ..+.+.-.+.++.+.+.+++.+-.++=+
T Consensus 167 ---------qt~e~~~~tl~~~~~-l~-p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 233 (353)
T PRK05904 167 ---------LKLKDLDEVFNFILK-HK-INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEec
Confidence 223445555554443 22 1244445555566531 1344556677888888888888776533
No 107
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.25 E-value=25 Score=36.59 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCccEEEeCccc-cccc-C--CCCC-----------------CCCC-Cc--hHHHHHHHHHHHHHCCCEEE
Q 009475 230 DEDFKFLSSNGINAVRIPVGW-WIAN-D--PTPP-----------------KPFV-GG--SSKVLDNAFDWAEKYGVKVI 285 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~-w~~~-~--~~~~-----------------~~~~-~~--~l~~ld~~v~~a~~~Gl~VI 285 (534)
++.++.|+..++|.+-+.+.- |.+. + |... .... .+ ..+.++++|+.|+++||.||
T Consensus 20 k~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI~vI 99 (326)
T cd06564 20 KDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRGVNII 99 (326)
T ss_pred HHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcCCeEe
Confidence 566777899999999986641 1111 1 1000 0000 11 57889999999999999999
Q ss_pred EEcCCCCCCC-----------CCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcC-CCeE-EEEEeccCCCCCCCCh
Q 009475 286 VDLHAAPGSQ-----------NGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYAN-RPSL-AAIELINEPLAPGVAL 351 (534)
Q Consensus 286 lDlH~~pG~q-----------ng~~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~-~~~v-lg~eL~NEP~~~~~~~ 351 (534)
..+-. ||.. -....+....+.-... +...+-..++++.+++.|.. .+.+ +|-| |........
T Consensus 100 PEID~-PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgD---E~~~~~~~~ 175 (326)
T cd06564 100 PEIDS-PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGAD---EYAGDAGYA 175 (326)
T ss_pred ccCCC-cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEeccc---cccccCccH
Confidence 76532 2210 0000000000000111 45555666788888888873 2322 3322 222112345
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 009475 352 DTLKSYYKAGYDAVRKYTS 370 (534)
Q Consensus 352 ~~~~~~~~~~~~aIR~~~p 370 (534)
+.+..|.+++.+.|++.+-
T Consensus 176 ~~~~~f~~~~~~~v~~~gk 194 (326)
T cd06564 176 EAFRAYVNDLAKYVKDKGK 194 (326)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 6788999999999999753
No 108
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=82.25 E-value=5.2 Score=42.07 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=75.7
Q ss_pred CHHHHHHHHhCCccEEEeCcccc---cccCCCCCCCCC----CchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWW---IANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w---~~~~~~~~~~~~----~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~s 301 (534)
.++-++.++++|+.-|=|---.. .+-+ ....+|. +...+.+.++++.|+++||++-+=+|...-. +.....
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~-S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~-~~~~~~ 170 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWP-SKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWH-HPDYPP 170 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS---TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCC-CTTTTS
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCC-CCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhc-CcccCC
Confidence 45566778899999987643211 0111 1111232 2357899999999999999999977754211 110000
Q ss_pred CCCC---C----CCCCChhh-HHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceE
Q 009475 302 ATRD---G----FQEWGDSN-VADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 302 g~~~---g----~~~W~~~~-~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
.... + ...| +.. .+....-++.|.++| .+.++=||...... .+.+.. .+.++.||+..|+.+
T Consensus 171 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~~--~~~~~~i~~~qp~~i 240 (346)
T PF01120_consen 171 DEEGDENGPADGPGNW-QRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWDS--AELYNWIRKLQPDVI 240 (346)
T ss_dssp SCHCHHCC--HCCHHH-HHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHHH--HHHHHHHHHHSTTSE
T ss_pred CccCCcccccccchhh-HhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccCH--HHHHHHHHHhCCeEE
Confidence 0000 0 0000 112 225566777888899 66777799877642 122322 888999999999765
Q ss_pred EE
Q 009475 374 VI 375 (534)
Q Consensus 374 Ii 375 (534)
|.
T Consensus 241 i~ 242 (346)
T PF01120_consen 241 IN 242 (346)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 109
>PRK05660 HemN family oxidoreductase; Provisional
Probab=82.21 E-value=15 Score=39.09 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCEE-EEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKV-IVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~V-IlDlH-~~pG~qng~~~sg~ 303 (534)
-++++.++.++++|+|.|=|-| ..+.+.. -... .....+...++++.+++.|+.. -+|+- +.||
T Consensus 104 ~l~~e~l~~Lk~~Gv~risiGv--qS~~~~~-L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg---------- 170 (378)
T PRK05660 104 TVEADRFVGYQRAGVNRISIGV--QSFSEEK-LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD---------- 170 (378)
T ss_pred cCCHHHHHHHHHcCCCEEEecc--CcCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 4689999999999999555544 2221110 0000 1136778888999999999975 48875 3332
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-------CCChHHHHHHHHHHHHHHHhcCCceE
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
.+.+.+.+.++.+.+ ++ -+.|-.+.|.=||..+ -.+.+.....|+.+.+...+.+-.++
T Consensus 171 ---------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 236 (378)
T PRK05660 171 ---------QSLEEALDDLRQAIA-LN-PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY 236 (378)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 234455555555544 22 2345556666666531 12334556788888888888776554
No 110
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=81.96 E-value=4.1 Score=47.72 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCccEEEeCccccc------ccCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWI------ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~------~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+.+..|+++|+++|=++=-+-. ..+.......++ +..+.|+++++.|+++||+||+|+
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56788999999999987321110 001111111122 567999999999999999999998
No 111
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=81.70 E-value=2.6 Score=45.93 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHhCCccEEEe-Ccccc----cccCCCCCCCCC--CchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 231 EDFKFLSSNGINAVRI-PVGWW----IANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~w----~~~~~~~~~~~~--~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+-++.|+++|+++|=| |+..- ...+.......+ -+..+.++++++.|+++||+||+|+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6789999999999976 33221 000111111111 2689999999999999999999998
No 112
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=81.31 E-value=20 Score=38.07 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
.++++.++.+++.|+|.|-|.|. .+.+.. -..+. ....+.+.++++.+++.|+. |-+||- +.||
T Consensus 100 ~~~~~~l~~l~~~G~nrislGvQ--S~~~~~-L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg---------- 166 (370)
T PRK06294 100 NLSESYIRALALTGINRISIGVQ--TFDDPL-LKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPT---------- 166 (370)
T ss_pred CCCHHHHHHHHHCCCCEEEEccc--cCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 36899999999999997766553 221110 00011 12467788899999999996 888864 3342
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
...+.+.+.++.+.+ ++ -+.|-.|.|.=||..+ -.+.+.....++.+.+.+.+.+-.+
T Consensus 167 ---------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 235 (370)
T PRK06294 167 ---------QSLSDFIVDLHQAIT-LP-ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR 235 (370)
T ss_pred ---------CCHHHHHHHHHHHHc-cC-CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe
Confidence 223445555555443 22 2456667888888631 1234566788888888888877655
Q ss_pred E
Q 009475 373 Y 373 (534)
Q Consensus 373 ~ 373 (534)
+
T Consensus 236 y 236 (370)
T PRK06294 236 Y 236 (370)
T ss_pred e
Confidence 4
No 113
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=81.24 E-value=53 Score=33.79 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCccEEEeCccc-ccc-cCCCC---CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCC----CC
Q 009475 230 DEDFKFLSSNGINAVRIPVGW-WIA-NDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN----EH 300 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~-w~~-~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~----~~ 300 (534)
++.++.|+..|+|.+-+-+.- ..+ ..|.- ...| ..+.++++++.|+++||.||..+-. ||..... ..
T Consensus 20 k~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~y---T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~~~~ 95 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAY---TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKHPEF 95 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCc---CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhCccc
Confidence 567788999999999986531 000 01100 1122 5788999999999999999987643 2210000 00
Q ss_pred CCCCC-CCCCCC-----hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC-C-------CCCChHHHHHHHHHHHHHHH
Q 009475 301 SATRD-GFQEWG-----DSNVADTVAVIDFLAARYANRPSLAAIELINEPL-A-------PGVALDTLKSYYKAGYDAVR 366 (534)
Q Consensus 301 sg~~~-g~~~W~-----~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~-~-------~~~~~~~~~~~~~~~~~aIR 366 (534)
...++ ..+... +...+-..++++++++-|...---+|-|=..+.. . .....+.+..+.+++.+.|+
T Consensus 96 ~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~ 175 (301)
T cd06565 96 RHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIK 175 (301)
T ss_pred ccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00000 000000 4555666678888888776422223333222211 1 01123567789999999999
Q ss_pred hcCCceEEEEeC
Q 009475 367 KYTSTAYVIMSN 378 (534)
Q Consensus 367 ~~~p~~~Iiv~~ 378 (534)
+.++ .+++=++
T Consensus 176 ~~g~-~~~~W~D 186 (301)
T cd06565 176 KRGP-KPMMWDD 186 (301)
T ss_pred HcCC-EEEEEhH
Confidence 9987 3444343
No 114
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=80.93 E-value=15 Score=40.03 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
.+|++.++.+++.|+|.|=|.|. .+. +.--..+. ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 149 ~lt~e~l~~L~~~G~~rvsiGvQ--S~~-~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg---------- 215 (453)
T PRK13347 149 TVTAEMLQALAALGFNRASFGVQ--DFD-PQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH---------- 215 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC--CCC-HHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC----------
Confidence 47899999999999996666552 221 10000111 13677889999999999996 778863 4443
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+.++.+.+ ++ -..|-.|.+...|... -.+.+...+.++.+.+.+.+.+=.+
T Consensus 216 ---------qt~e~~~~tl~~~~~-l~-p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 216 ---------QTVESFRETLDKVIA-LS-PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 234556666666554 22 1234445555555421 1234566778888888888877544
No 115
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=80.69 E-value=18 Score=38.36 Aligned_cols=122 Identities=22% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
.++++.++.+++.|+|.|=|.+.- + ++.--..+ .....+.+.++++.++++|+. |-+|+- +.||
T Consensus 97 ~l~~e~l~~l~~~G~~rvsiGvqS--~-~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg---------- 163 (377)
T PRK08599 97 DLTKEKLQVLKDSGVNRISLGVQT--F-NDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG---------- 163 (377)
T ss_pred CCCHHHHHHHHHcCCCEEEEeccc--C-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC----------
Confidence 468999999999999977776632 2 11000001 123577888999999999987 567764 4443
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+.++.+.+ ++ -+.+..+.|.-||..+ ..+.+...+.++.+.+.+++.+=.+
T Consensus 164 ---------qt~~~~~~~l~~~~~-l~-~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ 232 (377)
T PRK08599 164 ---------QTIEDFKESLAKALA-LD-IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQ 232 (377)
T ss_pred ---------CCHHHHHHHHHHHHc-cC-CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcE
Confidence 223444444544433 22 2345556677777632 0234555678888888888877544
No 116
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=80.16 E-value=1.9 Score=44.67 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEcCCCCC
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDlH~~pG 293 (534)
..++.|++.+-|++.|+++|..|-+..|
T Consensus 107 t~~rwd~l~~F~~~tG~~liFgLNAL~g 134 (319)
T PF03662_consen 107 TMSRWDELNNFAQKTGLKLIFGLNALLG 134 (319)
T ss_dssp -----HHHHHHHHHHT-EEEEEE-TTTS
T ss_pred chhHHHHHHHHHHHhCCEEEEEecccCC
Confidence 4678999999999999999999998754
No 117
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=80.03 E-value=24 Score=38.16 Aligned_cols=122 Identities=22% Similarity=0.230 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCE-EEEEc-CCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDL-HAAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~-VIlDl-H~~pG~qng~~~sg~ 303 (534)
.++.+-|+.+++.|+| ||-++-+.+-+..- ... .....+....+++.+++.|+. |-+|| ++.|+
T Consensus 134 ~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~l-k~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~---------- 200 (416)
T COG0635 134 TVEAEKFKALKEAGVN--RISLGVQSFNDEVL-KALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPG---------- 200 (416)
T ss_pred CCCHHHHHHHHHcCCC--EEEeccccCCHHHH-HHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 4678999999999999 99887654422100 000 012456678899999999887 77897 45553
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+-.+.+.+ ++ -+.|-.|.|.-||... -.+.+.-.+.++.+.+.+.+.+=.+
T Consensus 201 ---------QT~~~~~~~l~~a~~-l~-pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~ 268 (416)
T COG0635 201 ---------QTLESLKEDLEQALE-LG-PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQ 268 (416)
T ss_pred ---------CCHHHHHHHHHHHHh-CC-CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcE
Confidence 223444444444443 22 4467789999999862 1234556678889999998887643
No 118
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=79.11 E-value=20 Score=39.05 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=77.3
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCC-CEEEEEcC-CCCCCCCCCCCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDLH-AAPGSQNGNEHSATR 304 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~G-l~VIlDlH-~~pG~qng~~~sg~~ 304 (534)
++++.++.+++.|+|.|-|.|- .+.+.. -... .....+.+.++++.++++| +.|.+||- +.||
T Consensus 161 ~t~e~l~~l~~aGvnRiSiGVQ--Sf~d~v-Lk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg----------- 226 (449)
T PRK09058 161 FDDEKADAALDAGANRFSIGVQ--SFNTQV-RRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPG----------- 226 (449)
T ss_pred CCHHHHHHHHHcCCCEEEecCC--cCCHHH-HHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC-----------
Confidence 5899999999999997777663 221110 0000 0124677888999999999 78999985 4443
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CC-ChHHHHHHHHHHHHHHHhcCCce
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GV-ALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~-~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
...+.+.+-++.+.+ ++ -..|-.|.|.-||..+ .. +.+...++|+.+.+.+++.+=.+
T Consensus 227 --------qT~e~~~~~l~~~~~-l~-~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~ 296 (449)
T PRK09058 227 --------QTPEIWQQDLAIVRD-LG-LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQ 296 (449)
T ss_pred --------CCHHHHHHHHHHHHh-cC-CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 122334444444333 22 2356667788888641 11 45677788999999999887655
Q ss_pred E
Q 009475 373 Y 373 (534)
Q Consensus 373 ~ 373 (534)
+
T Consensus 297 y 297 (449)
T PRK09058 297 L 297 (449)
T ss_pred E
Confidence 3
No 119
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=78.82 E-value=19 Score=38.28 Aligned_cols=122 Identities=20% Similarity=0.115 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCEEEEEcC-CCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEHSATR 304 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~VIlDlH-~~pG~qng~~~sg~~ 304 (534)
.++++.++.+++.|+|.|-|-| ..+.+..- ... .....+.+.++++++++.++.|-+||- +.||
T Consensus 101 ~i~~e~L~~l~~~GvnrislGv--QS~~d~vL-~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg----------- 166 (380)
T PRK09057 101 SVEAGRFRGYRAAGVNRVSLGV--QALNDADL-RFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPG----------- 166 (380)
T ss_pred cCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCC-----------
Confidence 3688999999999999666544 22221100 001 112566778889999999999999985 3443
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
...+.+.+-++.+.+ + +-+.|-.+.|.=||..+ -.+.+...+.++.+.+.+.+.+-.+
T Consensus 167 --------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ 235 (380)
T PRK09057 167 --------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPA 235 (380)
T ss_pred --------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 122334444444443 2 33466667777777631 1234556678888888888776543
No 120
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=78.39 E-value=27 Score=36.82 Aligned_cols=121 Identities=21% Similarity=0.149 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH~-~pG~qng~~~sg~ 303 (534)
.+|++.++.|+++|+|.|-|.|. .+.+.. -..+. ....+.+.++++.+++.|+. |-+|+-- .|+
T Consensus 97 ~lt~e~l~~l~~~Gv~risiGvq--S~~~~~-l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 163 (360)
T TIGR00539 97 LITAEWCKGLKGAGINRLSLGVQ--SFRDDK-LLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL---------- 163 (360)
T ss_pred CCCHHHHHHHHHcCCCEEEEecc--cCChHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC----------
Confidence 47899999999999997776553 221110 00111 23578888999999999995 7788753 332
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-------CCChHHHHHHHHHHHHHHHhcCCc
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTST 371 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~ 371 (534)
.+.+.+.+.++.+.+ ++ -+.+-.+.+.=||..+ ..+.+...++++.+.+.+++.+=.
T Consensus 164 ---------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 227 (360)
T TIGR00539 164 ---------QTLNSLKEELKLAKE-LP-INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFK 227 (360)
T ss_pred ---------CCHHHHHHHHHHHHc-cC-CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 234455555555543 22 2345445566566532 123455667777777777776544
No 121
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=77.40 E-value=26 Score=38.17 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCC-EEEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGV-KVIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl-~VIlDlH-~~pG~qng~~~sg~ 303 (534)
-+|++.++.|+++|+|.|-|.+.- +.+. .-..+. ....+.+.++++.++++|+ .|-+|+- +.||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGvqS--~~~~-~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGVQD--FDPE-VQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK---------- 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCC--CCHH-HHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC----------
Confidence 378999999999999988887642 2110 000011 1367788899999999999 7888875 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC----------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
.+.+.+.+.++.+.+- +-..+-.+.+...|... -.+.+...+.++.+.+...+.+=.+
T Consensus 215 ---------qt~e~~~~~l~~~~~l--~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 215 ---------QTPESFARTLEKVLEL--RPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred ---------CCHHHHHHHHHHHHhc--CCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 2234555555555442 12344445555555420 1245667788888888888876544
No 122
>PLN03244 alpha-amylase; Provisional
Probab=76.95 E-value=37 Score=39.53 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEc---CCCCCCCCC----------CCCCCCCCCCCCCC--------hhhHHHHHHHHH
Q 009475 265 GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNG----------NEHSATRDGFQEWG--------DSNVADTVAVID 323 (534)
Q Consensus 265 ~~l~~ld~~v~~a~~~Gl~VIlDl---H~~pG~qng----------~~~sg~~~g~~~W~--------~~~~~~~~~~w~ 323 (534)
+..+.|+++|+.|.++||.||||+ |..+....| ..+.+.+.....|. +..++..++..+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHH
Confidence 457889999999999999999997 444432111 11111111123454 233344445555
Q ss_pred HHHHHhcCC-------CeEEEEE--e--ccCCCC----CCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 324 FLAARYANR-------PSLAAIE--L--INEPLA----PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 324 ~lA~ryk~~-------~~vlg~e--L--~NEP~~----~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.-.+.|.=+ ++++-.+ + .+.+.. ...+ ..-..|++.+-..|++..|+.+.|.++
T Consensus 518 yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d-~dAv~fL~laN~~ih~~~P~~itIAED 586 (872)
T PLN03244 518 WWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVD-KDALMYLILANEILHALHPKIITIAED 586 (872)
T ss_pred HHHHHhCcCcceeecchhheeeccccccccCCccccccccCC-chHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 555555422 1222101 0 011110 0112 234567888888899999998877764
No 123
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=76.15 E-value=55 Score=34.40 Aligned_cols=59 Identities=14% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCccEEEeCcc---cccccCCCCC-----CCCCC-c--hHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVG---WWIANDPTPP-----KPFVG-G--SSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~---~w~~~~~~~~-----~~~~~-~--~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
++.++.|+..++|.+-+.+. -|.+.-+.-| ..+.+ + ..+.++++|+.|+++||.||..+
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 55677789999999988763 1212111111 11111 1 57889999999999999999876
No 124
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=76.01 E-value=30 Score=36.98 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCEEEEEcC-CCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEHSATR 304 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~VIlDlH-~~pG~qng~~~sg~~ 304 (534)
.++++.++.+++.|+|-|=| +-..+.+..- ... .....+...++++.|++.+..|-+||- +.||
T Consensus 108 ~~~~e~l~~l~~~GvnRiSi--GvQS~~d~~L-~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg----------- 173 (390)
T PRK06582 108 SFETEKFKAFKLAGINRVSI--GVQSLKEDDL-KKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG----------- 173 (390)
T ss_pred cCCHHHHHHHHHCCCCEEEE--ECCcCCHHHH-HHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC-----------
Confidence 37899999999999995554 4332221100 000 112466777788889888888999985 4443
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCceE
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
...+.+.+-.+.+++ + +-+.|-.+.|.=||..+ ..+.+...+.|+.+.+.+++.+-.++
T Consensus 174 --------qt~e~~~~~l~~~~~-l-~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 243 (390)
T PRK06582 174 --------QTLKDWQEELKQAMQ-L-ATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRY 243 (390)
T ss_pred --------CCHHHHHHHHHHHHh-c-CCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcee
Confidence 123344444444443 2 33567778888888531 12345667888888899888876554
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=75.03 E-value=7.8 Score=48.62 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCccEEEe-Ccccccc------cCCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRI-PVGWWIA------NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~w~~------~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+-+..|+++|+++|=| ||. -.. .+.......++ +..+.|+++++.|+++||+||+|+
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~-~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPIL-KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCc-CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45678899999999987 331 100 00011111122 578999999999999999999998
No 126
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=74.28 E-value=38 Score=35.56 Aligned_cols=122 Identities=20% Similarity=0.138 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
-+|++.++.+++.|+|.|-|.|. .+.+.. -.... ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 95 ~~~~e~l~~l~~~GvnRiSiGvQ--S~~~~~-L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg---------- 161 (350)
T PRK08446 95 SATKAWLKGMKNLGVNRISFGVQ--SFNEDK-LKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL---------- 161 (350)
T ss_pred CCCHHHHHHHHHcCCCEEEEecc--cCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC----------
Confidence 46899999999999996666553 222110 00011 23578889999999999996 668875 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCC-----ChHHHHHHHHHHHHHHHhcCCceE
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-----ALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~-----~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
.+.+.+.+.++.+.+ .+ -+.|-.+.|.=||..+-. ..+. ...++.+.+.+++.+-.++
T Consensus 162 ---------qt~~~~~~~l~~~~~-l~-~~~is~y~L~~~~gT~l~~~~~~~~~~-~~~~~~~~~~l~~~Gy~~y 224 (350)
T PRK08446 162 ---------DNKKLLKEELKLAKE-LP-INHLSAYSLTIEENTPFFEKNHKKKDD-ENLAKFFIEQLEELGFKQY 224 (350)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEeccceecCCChhHHhhhcCCCH-HHHHHHHHHHHHHCCCcEE
Confidence 223455555555443 22 234555666667764210 0111 3467777888888765543
No 127
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=72.45 E-value=47 Score=34.17 Aligned_cols=126 Identities=18% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHH---hCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEEcC-CCCCCCCCCCC
Q 009475 226 SYITDEDFKFLS---SNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEH 300 (534)
Q Consensus 226 ~~ite~d~~~ia---~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlDlH-~~pG~qng~~~ 300 (534)
..++++.++.|+ +.|++ +||-++.....+.. -..+. ....+.+.++++.++++|+.|.+++- +.||
T Consensus 119 d~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~-L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg------- 189 (302)
T TIGR01212 119 DCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKT-LKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG------- 189 (302)
T ss_pred CcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHH-HHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC-------
Confidence 346676666665 55885 34434332221110 00011 12567788999999999999877653 3332
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC--------CCChHHHHHHHHHHHHHHHhcCCce
Q 009475 301 SATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP--------GVALDTLKSYYKAGYDAVRKYTSTA 372 (534)
Q Consensus 301 sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~--------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (534)
...+.+.+..+.+.+ ++ -..|-.+-+.-+|..+ ......+..+++.+...++...|+.
T Consensus 190 ------------et~e~~~~t~~~l~~-l~-~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~ 255 (302)
T TIGR01212 190 ------------EDREEMMETAKIVSL-LD-VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEV 255 (302)
T ss_pred ------------CCHHHHHHHHHHHHh-cC-CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCe
Confidence 223555555555544 22 1234446666677642 1122245678888888888888765
Q ss_pred EE
Q 009475 373 YV 374 (534)
Q Consensus 373 ~I 374 (534)
.|
T Consensus 256 ~i 257 (302)
T TIGR01212 256 VI 257 (302)
T ss_pred EE
Confidence 43
No 128
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=72.06 E-value=7.4 Score=40.37 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
.+.++.+++.||.-|=-.+. .| ++.....+.+++++++.|.+.|++||+|+-
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl~-----~~---~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSLL-----IP---EEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred HHHHHHHHHcCccceeeecc-----cC---CchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 45577778899886543221 22 233446899999999999999999999985
No 129
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=71.04 E-value=39 Score=35.21 Aligned_cols=142 Identities=12% Similarity=0.108 Sum_probs=92.6
Q ss_pred hhccCCCCCHHHHHHHHhCCc-cEEEeCcccc-cccC----------------CCCC----CCC--CCchHHHHHHHHHH
Q 009475 221 QDHWDSYITDEDFKFLSSNGI-NAVRIPVGWW-IAND----------------PTPP----KPF--VGGSSKVLDNAFDW 276 (534)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~-N~VRIPv~~w-~~~~----------------~~~~----~~~--~~~~l~~ld~~v~~ 276 (534)
-.||+.++ ++-++.|++.|+ +.|=||+--+ .... ..+. .+| .+.+++.+-+.|+.
T Consensus 97 mry~~P~i-~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~ 175 (320)
T COG0276 97 MRYGPPFI-EEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIRE 175 (320)
T ss_pred ecCCCCcH-HHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHH
Confidence 36787776 689999999999 6677777421 1110 0000 112 23577777776654
Q ss_pred -HHHC---CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhc--CCCeEEEEEeccCCCCCCCC
Q 009475 277 -AEKY---GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVA 350 (534)
Q Consensus 277 -a~~~---Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk--~~~~vlg~eL~NEP~~~~~~ 350 (534)
..++ +..+|++.|+.|-+.... | +.+.++..+.-+.|+++.+ .....++|+--.=|.
T Consensus 176 ~~~~~~~~~~~llfSaHglP~~~~~~-------G-----DpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~----- 238 (320)
T COG0276 176 KLAKHPRDDDVLLFSAHGLPKRYIDE-------G-----DPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPE----- 238 (320)
T ss_pred HHHhcCCCCeEEEEecCCCchhhhhc-------C-----CchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCC-----
Confidence 4444 699999999999643211 1 2466777778888888887 566788898733332
Q ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 009475 351 LDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (534)
Q Consensus 351 ~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~ 381 (534)
+-+..+.++.++.+.+.+.++++++..++-
T Consensus 239 -~WL~P~t~~~l~~L~~~g~k~iiv~pigFv 268 (320)
T COG0276 239 -PWLQPYTDDLLEELGEKGVKKIIVVPIGFV 268 (320)
T ss_pred -CCCCCCHHHHHHHHHhcCCCeEEEECCchh
Confidence 234456667777777777888999987665
No 130
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=70.92 E-value=1.3e+02 Score=31.66 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCccEEEeCcc----cccccCCCCC----CCCC-----------------Cc--hHHHHHHHHHHHHHCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVG----WWIANDPTPP----KPFV-----------------GG--SSKVLDNAFDWAEKYGV 282 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~----~w~~~~~~~~----~~~~-----------------~~--~l~~ld~~v~~a~~~Gl 282 (534)
++.++.|+..++|.+-+.+. |..-....|. ..+. .+ ..+.++++|+.|+++||
T Consensus 21 k~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI 100 (357)
T cd06563 21 KRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAAERGI 100 (357)
T ss_pred HHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHHHcCC
Confidence 55677789999999998763 2111110000 0000 11 48889999999999999
Q ss_pred EEEEEcCC----------CCCCCCCCCC----CCCC--CCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 283 KVIVDLHA----------APGSQNGNEH----SATR--DGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 283 ~VIlDlH~----------~pG~qng~~~----sg~~--~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
.||..+-. .|.-...... +... .+.-.-. +...+-..++++.+++-|...---+|-|=.+.-.
T Consensus 101 ~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgDE~~~~~ 180 (357)
T cd06563 101 TVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGDEVPKGQ 180 (357)
T ss_pred EEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEeccccCCcc
Confidence 99987621 2211000000 0000 0000001 3455556677788888776533234443222211
Q ss_pred CCC-------------CCh-HHHHHHHHHHHHHHHhcCC
Q 009475 346 APG-------------VAL-DTLKSYYKAGYDAVRKYTS 370 (534)
Q Consensus 346 ~~~-------------~~~-~~~~~~~~~~~~aIR~~~p 370 (534)
... .+. +.+..|.+++.+.|++.+-
T Consensus 181 w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~ 219 (357)
T cd06563 181 WEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGK 219 (357)
T ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 100 122 2335678888899988653
No 131
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=70.27 E-value=24 Score=38.50 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~-VIlDlH-~~pG~qng~~~sg~ 303 (534)
-++++.++.|+++|+|.|-|.+. .+.+.. -..+. ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 148 ~l~~e~l~~lk~~G~~risiGvq--S~~~~~-l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (455)
T TIGR00538 148 YITKDVIDALRDEGFNRLSFGVQ--DFNKEV-QQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK---------- 214 (455)
T ss_pred cCCHHHHHHHHHcCCCEEEEcCC--CCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC----------
Confidence 36899999999999997777653 221100 00011 13567788999999999996 668865 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC----------CCCChHHHHHHHHHHHHHHHhcCCc
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTST 371 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~ 371 (534)
.+.+.+.+.++.+.+ ++ -..|..|.+.=+|.. .-.+.+...+.++.+.+..++.+-.
T Consensus 215 ---------qt~e~~~~tl~~~~~-l~-~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 215 ---------QTKESFAKTLEKVAE-LN-PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 234455555555544 22 123433444223321 0124567778888888888877643
No 132
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=69.67 E-value=7.5 Score=43.50 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCccEEEeCccccccc-----CCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIAN-----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~-----~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+-++.|+++|++++=|+=.+-... .+...+...+ +.++.++++|.++.+.||++|+|+
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~ 108 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADL 108 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEee
Confidence 4578999999999999853221110 0111112222 579999999999999999999998
No 133
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.19 E-value=48 Score=33.05 Aligned_cols=150 Identities=9% Similarity=-0.007 Sum_probs=81.5
Q ss_pred HHHhCCccEEEeCcc---c-ccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCC
Q 009475 235 FLSSNGINAVRIPVG---W-WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 310 (534)
Q Consensus 235 ~ia~~G~N~VRIPv~---~-w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W 310 (534)
.+++.|+..+=+... + +....++ .......++.+++.++.|+..|.++|+-....++. . ..
T Consensus 55 ~~~~~gl~v~s~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~---------~-~~--- 119 (275)
T PRK09856 55 LAQTYQMPIIGYTPETNGYPYNMMLGD--EHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGY---------L-TP--- 119 (275)
T ss_pred HHHHcCCeEEEecCcccCcCccccCCC--HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCC---------C-CC---
Confidence 445889987655321 1 0011111 11123478899999999999999988552211111 0 00
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcC-CceEEEEeCCC---CCCChh
Q 009475 311 GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHK 386 (534)
Q Consensus 311 ~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Iiv~~~~---~~~~~~ 386 (534)
.....+.+++.++.|++.-+.+.-.+++|.++ |... ....-.+++.+.+++++ |+..+.+.... .+.++.
T Consensus 120 ~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~-~~~~-----~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~ 193 (275)
T PRK09856 120 PNVIWGRLAENLSELCEYAENIGMDLILEPLT-PYES-----NVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVM 193 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC-CCcc-----cccCCHHHHHHHHHHcCCCcceeEEeecchhcCCCCHH
Confidence 03456778888888888777777678888664 2211 11122556677777777 45545554321 111222
Q ss_pred hhhcccCCCceEEEEEeecccC
Q 009475 387 ELLSFASGLSRVVIDVHYYNLF 408 (534)
Q Consensus 387 ~~~~~~~~~~nvv~d~H~Y~~f 408 (534)
..+.. ...-+..+|.-+..
T Consensus 194 ~~i~~---~~~rI~~vHi~D~~ 212 (275)
T PRK09856 194 SYFDK---LGDKLRHLHIVDSD 212 (275)
T ss_pred HHHHH---hCCcEEEEEEEcCC
Confidence 22211 12347778887653
No 134
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=68.83 E-value=56 Score=30.20 Aligned_cols=115 Identities=21% Similarity=0.145 Sum_probs=66.6
Q ss_pred eeeEe----cccceeecc--ccCCcCCcCCCCCcccccceeEEeeeeceeEEEeecCCCceEEeccC--CC--CCc-ce-
Q 009475 34 LRAVN----LGNWLVTEG--WMKPSRFDDIPNKDLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRT--SA--SGW-ET- 101 (534)
Q Consensus 34 ~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~--~~--~~w-et- 101 (534)
+|.+. .-|||...+ =..|..=..+......|| .|.+||..+|||--.-.+++-.++|.-+ .. +.| .|
T Consensus 18 Lry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG-~V~Ir~~y~nKfWrr~s~n~~WI~ada~~p~ed~s~~~cTL 96 (153)
T PF07468_consen 18 LRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDG-LVHIRCCYNNKFWRRSSPNDYWIWADADDPDEDQSKPSCTL 96 (153)
T ss_dssp EEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT--EEEEETTTTEEEEESCCC--BEEEEESSHHH-TCSTCGG-
T ss_pred EEEEecccccceeEEecCCcCCCCceeEEEEEcccCCC-eEEEEeccCCceeEeCCCCCcEEEecCCCcccccCCCCceE
Confidence 56666 557776554 222221111211123566 8999999999999876666556666533 32 333 45
Q ss_pred EEEEEec---CceEEEEee-CCcEEEeecCCC--CceEEEeecCCCCCc--eEEEE
Q 009475 102 FRLWRVN---ETFYNFRVN-NKQFIGLENQGQ--GNGLVAVSNTAGYSE--TFQIV 149 (534)
Q Consensus 102 f~~~~~~---~~~~~~~~~-n~~~v~~~~~g~--~~~~~a~~~~~~~~E--tF~iv 149 (534)
|+.+.++ ...++||.. |+.|..--..|+ .+-|.|..++|..-- -|+|+
T Consensus 97 F~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~~~~i~~~~~~~~~~i 152 (153)
T PF07468_consen 97 FEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAASSSIDREAKDVFTII 152 (153)
T ss_dssp EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEEESS--CCGTT-EEEE
T ss_pred EEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeeccCcccccccceEEEc
Confidence 9998876 467899988 888877654322 356889888886543 56655
No 135
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=68.44 E-value=52 Score=36.40 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCC-EEEEEcC-CCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLH-AAPGSQNGNEHSAT 303 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl-~VIlDlH-~~pG~qng~~~sg~ 303 (534)
.+|++.++.|++.|+|.|-|.+ ..+.+..- ..+ .....+.+.++++.|+++|+ .|-+|+- +.||
T Consensus 266 ~it~e~L~~Lk~~Gv~RISIGv--QS~~d~vL-k~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg---------- 332 (488)
T PRK08207 266 TITEEKLEVLKKYGVDRISINP--QTMNDETL-KAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG---------- 332 (488)
T ss_pred CCCHHHHHHHHhcCCCeEEEcC--CcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC----------
Confidence 5789999999999999555544 22211100 001 12367888999999999999 7778875 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC---------CCChHHHHHHHHHHHHHHHhcCCceE
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP---------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
.+.+.+.+.++.+.+ ++ -+.+-.+.|.=+|... -.+.+...+.++.+.+..++.+-.++
T Consensus 333 ---------Et~ed~~~tl~~l~~-L~-pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 333 ---------EGLEEVKHTLEEIEK-LN-PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhh
Confidence 223455555555443 22 1233333333333321 12345667788888888887765443
No 136
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=67.98 E-value=88 Score=29.75 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=69.2
Q ss_pred ccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCC
Q 009475 223 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (534)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg 302 (534)
+|..-|+..|++.+|+.|+..|=|-++ +. ..+.. ..+++-++.|++.||.|=+ .|-.. .
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikat-----eG---~~~~D---~~~~~n~~~A~~aGl~vG~-Yhf~~-~-------- 66 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLT-----EG---TTYRN---PYAASQIANAKAAGLKVSA-YHYAH-Y-------- 66 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEc-----CC---CCccC---hHHHHHHHHHHHCCCeeEE-EEEEe-c--------
Confidence 566667788999999999884433222 11 11111 2367889999999997611 22110 0
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcC-CCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 303 TRDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~-~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
... ...++++..+++.+. .+.- .+.++.+|+ |... . ...+.++.++.++.|++.+-..++|..+
T Consensus 67 --~~~----~~a~~eA~~f~~~~~-~~~~~~~~~~~lD~--E~~~-~--~~~~~~~~~~F~~~v~~~g~~~~~iY~~ 131 (192)
T cd06522 67 --TSA----ADAQAEARYFANTAK-SLGLSKNTVMVADM--EDSS-S--SGNATANVNAFWQTMKAAGYKNTDVYTS 131 (192)
T ss_pred --CCh----HHHHHHHHHHHHHHH-HcCCCCCCceEEEe--ecCC-C--cchHHHHHHHHHHHHHHcCCCCcEEEcc
Confidence 000 133445555666653 3322 223344554 2221 1 3457788888899999987755666543
No 137
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=66.18 E-value=72 Score=33.28 Aligned_cols=143 Identities=16% Similarity=0.188 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCccEEEeCcc----cccccCCCC----CCCC------CCc--hHHHHHHHHHHHHHCCCEEEEEcCC---
Q 009475 230 DEDFKFLSSNGINAVRIPVG----WWIANDPTP----PKPF------VGG--SSKVLDNAFDWAEKYGVKVIVDLHA--- 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~----~w~~~~~~~----~~~~------~~~--~l~~ld~~v~~a~~~Gl~VIlDlH~--- 290 (534)
++.++.|+..++|.+-+.+. |.......| ...+ ..+ ..+.++++|+.|+++||.||..+-.
T Consensus 21 k~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD~PGH 100 (329)
T cd06568 21 KRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEIDMPGH 100 (329)
T ss_pred HHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecCCcHH
Confidence 45677789999999998774 211111100 0000 011 5788999999999999999987621
Q ss_pred -------CCCCC-CCCCC---CCCCCCCCCCC---hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHH
Q 009475 291 -------APGSQ-NGNEH---SATRDGFQEWG---DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKS 356 (534)
Q Consensus 291 -------~pG~q-ng~~~---sg~~~g~~~W~---~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~ 356 (534)
+|.-. .+... .+...+...-. +...+-..++++.+++-|.+.---+|- -|... ...+.+..
T Consensus 101 ~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiGg---DE~~~--~~~~~~~~ 175 (329)
T cd06568 101 TNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHIGG---DEAHS--TPHDDYAY 175 (329)
T ss_pred HHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEec---ccCCC--CchHHHHH
Confidence 22110 00000 00000000011 344555567777777777543222332 34432 23567888
Q ss_pred HHHHHHHHHHhcCCceEEEEeC
Q 009475 357 YYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 357 ~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
|.+++.+.+++.+. .+++=++
T Consensus 176 f~~~~~~~v~~~Gk-~~~~W~d 196 (329)
T cd06568 176 FVNRVRAIVAKYGK-TPVGWQE 196 (329)
T ss_pred HHHHHHHHHHHCCC-eEEEECc
Confidence 99999999998764 3443333
No 138
>PRK04302 triosephosphate isomerase; Provisional
Probab=66.04 E-value=1.1e+02 Score=29.90 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=65.0
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 308 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~ 308 (534)
.+.-++.+++.|++.|=||-+-. . . .++.+.+.++.|+++||.+|++.|..
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser-----~--~-----~~~e~~~~v~~a~~~Gl~~I~~v~~~----------------- 124 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSER-----R--L-----TLADIEAVVERAKKLGLESVVCVNNP----------------- 124 (223)
T ss_pred hhhHHHHHHHcCCCEEEEecccc-----c--c-----CHHHHHHHHHHHHHCCCeEEEEcCCH-----------------
Confidence 34558889999999997754210 0 1 23458899999999999999987741
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCC-hHHHHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 009475 309 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (534)
Q Consensus 309 ~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~ 381 (534)
++.. .+ .+..+.+++|+...= .+.+.. ........++.++.||+..++.+|+.+++..
T Consensus 125 -------~~~~----~~---~~~~~~~I~~~p~~~-igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 125 -------ETSA----AA---AALGPDYVAVEPPEL-IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred -------HHHH----HH---hcCCCCEEEEeCccc-cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 1111 11 122345777664211 111101 0012334677788899876677888886554
No 139
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=65.98 E-value=58 Score=29.50 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=57.5
Q ss_pred ccceeEEeeeeceeEEEeecCCCceEEeccCCC----CCcceEEEEEecCceEEEEee-CCcEEEeecCCCC--ceEEEe
Q 009475 64 DGTQVQFMSTKFQKYIAAESGGGTIVVANRTSA----SGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQG--NGLVAV 136 (534)
Q Consensus 64 ~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~----~~wetf~~~~~~~~~~~~~~~-n~~~v~~~~~g~~--~~~~a~ 136 (534)
|| .|.+||.-+|||--+- .-.++|.-+.. +.=.-|+-+.+++++++||.. ||.|+.-...||. +-|.|.
T Consensus 50 dg-~V~ik~~~~nKfWr~s---~~WI~a~s~d~~e~~sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~t~~~~~~~CL~A~ 125 (139)
T smart00791 50 NG-LVHIKSNYTNKFWRLS---HYWITADANDPDENKSACTLFRPLYVEMKKIRLLNVQLGHYTKRYTVGKSFVSCLNAA 125 (139)
T ss_pred CC-cEEEEecCCCceEccC---CCEEEecCCCCccCCCcccEEeEEeccCceEEEEEecCCceEEeecCCCCcccceeec
Confidence 44 8999999999998654 44677766555 233458888889999999988 9999988755432 357777
Q ss_pred ecCCCCCceEE
Q 009475 137 SNTAGYSETFQ 147 (534)
Q Consensus 137 ~~~~~~~EtF~ 147 (534)
.+++..-..++
T Consensus 126 ~~~i~~~a~l~ 136 (139)
T smart00791 126 SSQIDTKAVLH 136 (139)
T ss_pred cccccceeeEE
Confidence 66665533333
No 140
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=65.86 E-value=18 Score=41.02 Aligned_cols=60 Identities=20% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCccEEEeCccccc-----c-cCCC--CC-----CCCCC--chHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWI-----A-NDPT--PP-----KPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~-----~-~~~~--~~-----~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
+...+.|+++|+++|=+.=.+-. . ..|. .+ ..+++ +.++.++++++.|.++||+||+||-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 67788999999999998432211 0 0011 01 11222 6899999999999999999999984
No 141
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=64.59 E-value=2e+02 Score=30.73 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCCCCCC--CC-CCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-eEEEEEeccCCCCCC-------
Q 009475 280 YGVKVIVDLHAAPGSQN--GN-EHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG------- 348 (534)
Q Consensus 280 ~Gl~VIlDlH~~pG~qn--g~-~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~vlg~eL~NEP~~~~------- 348 (534)
.+|+..-.--.+||.-. |. ...|..-|.+ .+.+-+.+.++.-++-+.|..+. ...|...-|||....
T Consensus 192 ~~lklfAsPWsaPgWlKttg~m~G~G~l~g~~--~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~~k~Q 269 (518)
T KOG2566|consen 192 GNLKLFASPWSAPGWLKTTGRMNGKGALLGDP--GDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKKWKWQ 269 (518)
T ss_pred CCceEEecCCCCCceeeecccccccccccCCC--CchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccCCcee
Confidence 45887777777776421 11 0011111111 02334444454445556676654 567888899998631
Q ss_pred ---CChHHHHHHHHHHH-HHHHhc--CCceEEEE-eCCCCCCChhhhhccc----CCCc-eEEEEEeecccCC
Q 009475 349 ---VALDTLKSYYKAGY-DAVRKY--TSTAYVIM-SNRLGPADHKELLSFA----SGLS-RVVIDVHYYNLFS 409 (534)
Q Consensus 349 ---~~~~~~~~~~~~~~-~aIR~~--~p~~~Iiv-~~~~~~~~~~~~~~~~----~~~~-nvv~d~H~Y~~f~ 409 (534)
.+++.-++|.++-+ -++.+. ..+..|+| .+.= .....|.+.. .... =--+.+|.|.-|.
T Consensus 270 tl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~R--g~LP~WadtvlnDpeAakYv~GIaVHwY~df~ 340 (518)
T KOG2566|consen 270 TLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQR--GLLPHWADTVLNDPEAAKYVHGIAVHWYQDFL 340 (518)
T ss_pred ecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCc--cCCCccchhhccChhhhhhccceEEEeecccc
Confidence 23455566665433 233332 23444554 3311 1122222211 1111 1246799998865
No 142
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=63.24 E-value=61 Score=30.21 Aligned_cols=128 Identities=18% Similarity=0.184 Sum_probs=73.0
Q ss_pred HHHHHHHhCCccEEEeCcc--cccccC--CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCC
Q 009475 231 EDFKFLSSNGINAVRIPVG--WWIAND--PTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 306 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~--~w~~~~--~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g 306 (534)
+-.+.+++.|+..+-+-.. +..... ..+..+ ....++.++++++.|++.|.+.|+- |.. ... .
T Consensus 31 ~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~-~~g--~~~----~----- 97 (213)
T PF01261_consen 31 ELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVV-HSG--RYP----S----- 97 (213)
T ss_dssp HHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEE-ECT--TES----S-----
T ss_pred HHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceee-cCc--ccc----c-----
Confidence 4444567899996655433 211110 011112 3346899999999999999998654 421 000 0
Q ss_pred CCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCc-eEEEEe
Q 009475 307 FQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST-AYVIMS 377 (534)
Q Consensus 307 ~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~-~~Iiv~ 377 (534)
..... ....+.+.+.++.+++..+.+.-.+++|....+...... . .+++.+.++++++. .-|.+.
T Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~i~~D 164 (213)
T PF01261_consen 98 GPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPF--S----VEEIYRLLEEVDSPNVGICFD 164 (213)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEES--S----HHHHHHHHHHHTTTTEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchh--h----HHHHHHHHhhcCCCcceEEEe
Confidence 00011 356778888888888888776667778855544421111 1 55667777777754 444443
No 143
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.52 E-value=96 Score=32.12 Aligned_cols=58 Identities=12% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCccEEEeCcc----cccccCCCC--------CCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVG----WWIANDPTP--------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~----~w~~~~~~~--------~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++.++.|+..++|.+-+.+. |..-....| +..| ..+.+.++++.|+++||.||..+-.
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y---T~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 21 KRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY---TQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred HHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc---CHHHHHHHHHHHHHcCCEEEEeecC
Confidence 55677789999999988762 321111111 0112 5778999999999999999987643
No 144
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=62.41 E-value=19 Score=35.71 Aligned_cols=123 Identities=11% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEecc
Q 009475 263 VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 342 (534)
Q Consensus 263 ~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N 342 (534)
.+.+++.+.++|..|++.||++|= |-++.=.. ..=.+...++|++-+++.++--......+++|+|-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQ-LAGYDVYY------------E~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMD 157 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQ-LAGYDVYY------------EEADEETRQRFIEGLKWAVELAARAQVMLAVEIMD 157 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEe-eccceeee------------ccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecc
Confidence 346899999999999999999863 22221000 00003566778777766555444455689999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCC---ChhhhhcccCCCceEEEEEeecccCC
Q 009475 343 EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPA---DHKELLSFASGLSRVVIDVHYYNLFS 409 (534)
Q Consensus 343 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~~---~~~~~~~~~~~~~nvv~d~H~Y~~f~ 409 (534)
-|.-. +...|. ...+.+++-...+.++ .++. +-.-...+..+ ..-+..+|.-..|.
T Consensus 158 tpfm~--sIsk~~-------~~~~~I~sP~f~vYPD-iGNlsaw~ndv~~El~lG-~~~I~aiHlKDTy~ 216 (287)
T COG3623 158 TPFMN--SISKWL-------KYDKYINSPWFTVYPD-IGNLSAWNNDVQSELQLG-IDKIVAIHLKDTYA 216 (287)
T ss_pred cHHHH--HHHHHH-------HHHHHhCCCcEEecCC-cccHhhhhhhHHHHHHcC-cCceEEEEeccccc
Confidence 98741 223333 3344555544444443 1110 00111122223 34566799887754
No 145
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=62.16 E-value=1.1e+02 Score=27.01 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=60.1
Q ss_pred eeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEee-CCcEEEeecCCCCceEEEeecCCCCCceEEEEEeCCC
Q 009475 76 QKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGD 154 (534)
Q Consensus 76 ~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~-n~~~v~~~~~g~~~~~~a~~~~~~~~EtF~ivr~~~~ 154 (534)
|.||--...| .|-..++.-+....|++..++.+.|.+|.. .++|+|.+.- +.|-+.. .+..-..|+-.-..++
T Consensus 8 ~~~L~I~~dG--~V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~---G~ly~s~-~~~~dC~F~E~~~~n~ 81 (123)
T cd00058 8 GFHLQILPDG--TVDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNKC---GKLYGSK-GFTEECLFREELLENN 81 (123)
T ss_pred CeEEEEcCCC--cEecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECCC---CCEEECC-CCCCCCEEEEEEccCC
Confidence 5666554322 566666666678899999999999999999 9999999974 3477777 7888888862222332
Q ss_pred CceEEEEec-CCceEEec
Q 009475 155 SSRVRLSAS-NGMFIQAI 171 (534)
Q Consensus 155 ~~~v~i~~~-nG~~Lq~~ 171 (534)
-+...-... .+.||-.+
T Consensus 82 Y~~y~S~~~~~~~ylal~ 99 (123)
T cd00058 82 YNTYASAKYRRRWYLALN 99 (123)
T ss_pred cEEEEEcccCCCcEEEEC
Confidence 222322222 36666554
No 146
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=61.73 E-value=79 Score=33.79 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCEEEEEcC-CCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEHSATR 304 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~VIlDlH-~~pG~qng~~~sg~~ 304 (534)
.++++.++.++++|+|-|=|.|- .+.+..- ... .....+.+.++++++++.+..|-+|+- +.||
T Consensus 119 ~~~~e~L~~l~~~GvnrisiGvQ--S~~~~~L-~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg----------- 184 (394)
T PRK08898 119 TFEAEKFAQFRASGVNRLSIGIQ--SFNDAHL-KALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG----------- 184 (394)
T ss_pred CCCHHHHHHHHHcCCCeEEEecc--cCCHHHH-HHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC-----------
Confidence 36789999999999996666542 2211100 000 012456677888999988888888874 3332
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-------CCChHHHHHHHHHHHHHHHhcCCceE
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (534)
...+.+.+-++.+.+ ++ -+.|-.+.+.=||..+ -.+.+...+.++.+.+.+++.+-.++
T Consensus 185 --------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 250 (394)
T PRK08898 185 --------QTLDEALADVETALA-FG-PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHY 250 (394)
T ss_pred --------CCHHHHHHHHHHHHh-cC-CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 122333333444332 22 2355556666666531 12335566777778888888775543
No 147
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=61.37 E-value=1.1e+02 Score=29.80 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=77.0
Q ss_pred HHHHHhCCccEEEeCccccccc-------C---------CCCCCCCC---------Cc----hHHHHHHHHHHHHHCCCE
Q 009475 233 FKFLSSNGINAVRIPVGWWIAN-------D---------PTPPKPFV---------GG----SSKVLDNAFDWAEKYGVK 283 (534)
Q Consensus 233 ~~~ia~~G~N~VRIPv~~w~~~-------~---------~~~~~~~~---------~~----~l~~ld~~v~~a~~~Gl~ 283 (534)
+...++.||..|-||+++-.-. + ..++..++ ++ ..+-||.+|+.|+..|--
T Consensus 22 ~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yAkalgC~ 101 (264)
T KOG4518|consen 22 YGAAASAGFKLVEVSIPYTEPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYAKALGCC 101 (264)
T ss_pred HHHHHhCCceEEEecCCCCChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHHHHhCCc
Confidence 4445789999999999862100 0 01122222 22 467789999999999865
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHH
Q 009475 284 VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYD 363 (534)
Q Consensus 284 VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~ 363 (534)
=|==+-+.|- +|.. . ....+.+.+-++.-|+.++.+.-|--+|.+|--. .+.....-|+++.+
T Consensus 102 rIHlmAG~~k-------~g~d--~----~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt----~PgY~ln~y~~Aa~ 164 (264)
T KOG4518|consen 102 RIHLMAGIPK-------SGDD--L----ENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYT----IPGYHLNNYEDAAD 164 (264)
T ss_pred eEEEeccCCC-------CCch--H----HHHHHHHHHHHHHHHHHhhhhceeeeecchhccc----CcchhcCCHHHHHH
Confidence 4322222221 1110 0 1334456678888899999998777778777322 23445556778888
Q ss_pred HHHhcCCceEEEE
Q 009475 364 AVRKYTSTAYVIM 376 (534)
Q Consensus 364 aIR~~~p~~~Iiv 376 (534)
.+..+..+.+-+.
T Consensus 165 Ilq~v~~~Nlqlq 177 (264)
T KOG4518|consen 165 ILQMVQSNNLQLQ 177 (264)
T ss_pred HHHHhcCCceehh
Confidence 8888777665443
No 148
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.70 E-value=8.8 Score=36.06 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 292 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~p 292 (534)
++.++..+.+|...|+++.+.+........+.......+.|+++++.|+++|+.+.|-.|...
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 677888899999999998763211111100011123677888999999999999999888653
No 149
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=59.41 E-value=21 Score=35.49 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCC---CeEEEEEeccCCCC----------CCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 009475 319 VAVIDFLAARYANR---PSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (534)
Q Consensus 319 ~~~w~~lA~ryk~~---~~vlg~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~ 380 (534)
.++...|..+|... ..|-+|.|=|||.. ...+.+++..-+-+..++||+.+|+..|+-...|
T Consensus 107 ~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP~~w 181 (239)
T PF12891_consen 107 DEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGPVEW 181 (239)
T ss_dssp HHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred HHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeechhh
Confidence 34466677777654 46888999999974 1245677888888889999999999887654333
No 150
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.34 E-value=33 Score=34.42 Aligned_cols=59 Identities=8% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+..++..+.+|...|+++-... ..++.. ........+.|+++.+.|+++|+.+.|-.|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAGYDV-YYEQAN-NETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECCccc-cccccH-HHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 5677888999999999852110 000100 0111224677888999999999999998883
No 151
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=58.93 E-value=11 Score=38.16 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccc-cCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~-~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
.+.+|++...+.|++.|||.++-... ....-. .-.+..++.+.++++.|+++|++|-+.+-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46889999999999999997753111 000000 112346888999999999999999888754
No 152
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=58.82 E-value=18 Score=38.22 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++-++.+++.||..|=.-+. .|. .-.+..++++++++++|+++||+|++|+..
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~-----ipe---~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLH-----IPE---DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHCCCCEEECCCC-----cCC---CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 45677788999887654332 121 112357999999999999999999999874
No 153
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=58.15 E-value=1.1e+02 Score=30.77 Aligned_cols=147 Identities=9% Similarity=0.030 Sum_probs=79.8
Q ss_pred HHHhCCccEEEeCccccc---ccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC
Q 009475 235 FLSSNGINAVRIPVGWWI---ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG 311 (534)
Q Consensus 235 ~ia~~G~N~VRIPv~~w~---~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~ 311 (534)
.+++.|+...-+..+.+. +..+++ ...+..++.++++++.|++.|..+|+ ++... . ..+. . .
T Consensus 60 ~l~~~gl~i~~~~~~~~~~~~l~~~~~--~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~---~---~~~~---~---~ 124 (279)
T TIGR00542 60 AIIETGVRIPSMCLSAHRRFPLGSKDK--AVRQQGLEIMEKAIQLARDLGIRTIQ-LAGYD---V---YYEE---H---D 124 (279)
T ss_pred HHHHcCCCceeeecCCCccCcCCCcCH--HHHHHHHHHHHHHHHHHHHhCCCEEE-ecCcc---c---ccCc---C---C
Confidence 356778876665433211 111110 11224688899999999999999885 44210 0 0000 0 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcC-CceEEEEeCCC---CCCChhh
Q 009475 312 DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKE 387 (534)
Q Consensus 312 ~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Iiv~~~~---~~~~~~~ 387 (534)
....+.+++.++.+++.-+.+.-.+++|.++.|.. .+.. ++.+.|+.++ |+.-+.+..+. ...+...
T Consensus 125 ~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~--~t~~-------~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~ 195 (279)
T TIGR00542 125 EETRRRFREGLKEAVELAARAQVTLAVEIMDTPFM--SSIS-------KWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQM 195 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchh--cCHH-------HHHHHHHHcCCCceEEEeCcChhhhccCCHHH
Confidence 24467788899999998888888889997665542 1222 3344456655 44444443221 1122222
Q ss_pred hhcccCCCceEEEEEeecccC
Q 009475 388 LLSFASGLSRVVIDVHYYNLF 408 (534)
Q Consensus 388 ~~~~~~~~~nvv~d~H~Y~~f 408 (534)
.... ...-+.-+|.-+..
T Consensus 196 ~i~~---~~~~i~~vHikD~~ 213 (279)
T TIGR00542 196 ELQL---GIDKIVAIHLKDTK 213 (279)
T ss_pred HHHH---hhhhEEEEEeCCCC
Confidence 2221 12457778887653
No 154
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=57.72 E-value=73 Score=27.90 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=48.2
Q ss_pred EEEEeeCCcEEEeecCCCCceEEEeecCCCCCceEEEEEeCCCCceEEEEec-CCceEEecccceeecC
Q 009475 112 YNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISETRLTAD 179 (534)
Q Consensus 112 ~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~~~EtF~ivr~~~~~~~v~i~~~-nG~~Lq~~g~~~v~ad 179 (534)
++|=+.+|+|+.+... +.|.++.+...+...|++..-+. +.|.|+.. .+.||..+....+.+.
T Consensus 3 ~~Ly~~~~~~L~i~~~---g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 3 VQLYCRTGYFLQINPN---GTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEETTSEEEEEETT---SBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred EEEEECCCeEEEECCC---CeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEccc
Confidence 3455557999999863 36999999989999999988865 36888886 5999998864444444
No 155
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=57.47 E-value=1.1e+02 Score=32.28 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccC-CCC-CC
Q 009475 271 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA-PG 348 (534)
Q Consensus 271 d~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NE-P~~-~~ 348 (534)
++++..|+++|++|++.- ..+. . ..=.+..++++++-.-.++++|.=+ |++|-=| |.. ..
T Consensus 67 ~~~~~~A~~~~v~v~~~~-~~~~-----~--------~l~~~~~R~~fi~siv~~~~~~gfD----GIdIDwE~p~~~~~ 128 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-DVPL-----E--------QISNPTYRTQWIQQKVELAKSQFMD----GINIDIEQPITKGS 128 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-ccCH-----H--------HcCCHHHHHHHHHHHHHHHHHhCCC----eEEEcccCCCCCCc
Confidence 578899999999999862 1110 0 0001466777777666777777432 2333222 322 12
Q ss_pred CChHHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 349 VALDTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 349 ~~~~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
.+.+.+..+++++.+++++.++...|.+
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~~Lsv 156 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGYQISF 156 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 3456788888888888888766555554
No 156
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=56.50 E-value=1.9e+02 Score=28.83 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=71.9
Q ss_pred HHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCC
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 310 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W 310 (534)
=-...|++.|++.|=|- +.+.. .+-.+.-+.+.+-+..|.++||.+|+-+--.-. .+
T Consensus 75 vS~~mL~d~G~~~viiG-----HSERR---~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~---------~r------ 131 (242)
T cd00311 75 ISAEMLKDAGAKYVIIG-----HSERR---QYFGETDEDVAKKVKAALEAGLTPILCVGETLE---------ER------ 131 (242)
T ss_pred CCHHHHHHcCCCEEEeC-----ccccc---CcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---------HH------
Confidence 34677899999999872 22221 223345677899999999999999998643210 00
Q ss_pred ChhhHHHHH-HHHHHHHHHhcC----CCeEEEEEeccCCCCC-----CCChHHHHHHHHHHHHHHHhcC----CceEEEE
Q 009475 311 GDSNVADTV-AVIDFLAARYAN----RPSLAAIELINEPLAP-----GVALDTLKSYYKAGYDAVRKYT----STAYVIM 376 (534)
Q Consensus 311 ~~~~~~~~~-~~w~~lA~ryk~----~~~vlg~eL~NEP~~~-----~~~~~~~~~~~~~~~~aIR~~~----p~~~Iiv 376 (534)
...++. .+.+++..-.++ .+-+++| ||.+. ..+.+...+..+.+-+.+++.. ++..|+.
T Consensus 132 ---~~~~~~~~~~~Ql~~~l~~~~~~~~~iIAY----EPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlY 204 (242)
T cd00311 132 ---EAGKTEEVVAAQLAAVLAGVEDLAPVVIAY----EPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILY 204 (242)
T ss_pred ---HcCCHHHHHHHHHHHHHhcchhhcCeEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEE
Confidence 000111 122233322222 3456776 57641 2344555655555555555543 4567777
Q ss_pred eCCCCCCChhhhhcc
Q 009475 377 SNRLGPADHKELLSF 391 (534)
Q Consensus 377 ~~~~~~~~~~~~~~~ 391 (534)
+++-...+...++..
T Consensus 205 GGSV~~~N~~~l~~~ 219 (242)
T cd00311 205 GGSVNPENAAELLAQ 219 (242)
T ss_pred CCCCCHHHHHHHhcC
Confidence 764433344444444
No 157
>PRK14565 triosephosphate isomerase; Provisional
Probab=56.03 E-value=1.4e+02 Score=29.68 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
|=....|++.|++.|=|- +.+.. .+-.+.-+.+.+=+..|.++||.+|+-+-....
T Consensus 75 evS~~mLkd~G~~~viiG-----HSERR---~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e---------------- 130 (237)
T PRK14565 75 EISAKMLKECGCSYVILG-----HSERR---STFHETDSDIRLKAESAIESGLIPIICVGETLE---------------- 130 (237)
T ss_pred ccCHHHHHHcCCCEEEEC-----ccccc---CcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHH----------------
Confidence 335677899999988772 22221 222223344555568999999999998653210
Q ss_pred CChhhHHHHH-HHHHHHHHHhcC-CCeEEEEEeccCCCCC-CCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCChh
Q 009475 310 WGDSNVADTV-AVIDFLAARYAN-RPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK 386 (534)
Q Consensus 310 W~~~~~~~~~-~~w~~lA~ryk~-~~~vlg~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~~~~~ 386 (534)
......+. -+.+++..-+.+ .+-+++| ||... +.....=.+..+++...||+..++..|+.+++-...+..
T Consensus 131 --~r~~~~~~~~~~~Ql~~~l~~~~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~ 204 (237)
T PRK14565 131 --DRENGMTKDVLLEQCSNCLPKHGEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIR 204 (237)
T ss_pred --HHHccChHHHHHHHHHHHhcCCCCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHH
Confidence 00001111 223344444433 2456666 57641 111112245678888999998877788888655444455
Q ss_pred hhhcc
Q 009475 387 ELLSF 391 (534)
Q Consensus 387 ~~~~~ 391 (534)
+++..
T Consensus 205 ~l~~~ 209 (237)
T PRK14565 205 DLKSI 209 (237)
T ss_pred HHhcC
Confidence 55553
No 158
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=55.27 E-value=18 Score=32.12 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=44.8
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCC-CCCCC-CCchHHHHHHHHHHHHHCCCE-EEEEcCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPT-PPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPG 293 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~-~~~~~-~~~~l~~ld~~v~~a~~~Gl~-VIlDlH~~pG 293 (534)
++++.++.|++.|++.|++.+..- ++. -...+ ....++.+-+.++.+.++|+. ++.-+...||
T Consensus 88 ~~~~~l~~l~~~~~~~i~~~l~s~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 88 LDEELLDELKKLGVDRIRISLESL---DEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp HCHHHHHHHHHTTCSEEEEEEBSS---SHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred hhHHHHHHHHhcCccEEecccccC---CHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 348999999999999999987531 110 00111 235788999999999999999 6666666553
No 159
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=54.89 E-value=1.5e+02 Score=30.54 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 267 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 267 l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
.+.+.+-|..|++.|++|+|.+-+..++. ..-.+...+++++-+..+.+.|. +-|+|+-=|.-.
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~------------~~~~~~~~~~fa~sl~~~~~~~g----~DGiDiD~E~~~ 122 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHV------------DLNHTAQEDNFVDSIVAIIKEYG----FDGLDIDLESGS 122 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCcc------------ccCCHHHHHHHHHHHHHHHHHhC----CCeEEEecccCC
Confidence 45678888999999999999985432211 00013445566655555555553 457777777532
Q ss_pred CCCChHHHHHHHHHHHHHHHhcC-CceEEEEe
Q 009475 347 PGVALDTLKSYYKAGYDAVRKYT-STAYVIMS 377 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aIR~~~-p~~~Iiv~ 377 (534)
.......-..-+.++++++|+.- ++-+|.+.
T Consensus 123 ~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~A 154 (312)
T cd02871 123 NPLNATPVITNLISALKQLKDHYGPNFILTMA 154 (312)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 11111122334455556666543 33344443
No 160
>PLN02449 ferrochelatase
Probab=54.07 E-value=1.9e+02 Score=32.05 Aligned_cols=143 Identities=16% Similarity=0.247 Sum_probs=85.9
Q ss_pred hccCCCCCHHHHHHHHhCCccEEEe-Cccc-cccc---------------CCC---CC----CCC--CCchHHHHHHHHH
Q 009475 222 DHWDSYITDEDFKFLSSNGINAVRI-PVGW-WIAN---------------DPT---PP----KPF--VGGSSKVLDNAFD 275 (534)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRI-Pv~~-w~~~---------------~~~---~~----~~~--~~~~l~~ld~~v~ 275 (534)
.||..++ ++-++.|++.|++.|-+ |+-- +... .+. .. ..| .+++++.+-+.|.
T Consensus 187 RY~~P~i-edal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~ 265 (485)
T PLN02449 187 RYWHPFT-EEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIK 265 (485)
T ss_pred hcCCCCH-HHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHH
Confidence 4787765 78999999999987764 5521 0000 000 00 011 2356666665555
Q ss_pred HHH-HC----CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcC----CCeEEEEEeccCCCC
Q 009475 276 WAE-KY----GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN----RPSLAAIELINEPLA 346 (534)
Q Consensus 276 ~a~-~~----Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~----~~~vlg~eL~NEP~~ 346 (534)
.+. +. ...+|+..|+.|-+.-. ..| +.+.++..+..+.|+++.+. .+..++|+----|.
T Consensus 266 ~~l~~~~~~~~~~LlFSAHGlP~~~v~------~~G-----DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~- 333 (485)
T PLN02449 266 KELAKFSDPEEVHIFFSAHGVPVSYVE------EAG-----DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPV- 333 (485)
T ss_pred HHHHhccCcCCcEEEEecCCChhhhhh------hcC-----CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCC-
Confidence 432 22 37899999999965210 001 23567777888888888754 45667777521221
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Q 009475 347 PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 382 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~ 382 (534)
+-+..+.++.++.+.+.+-++++++..++-+
T Consensus 334 -----eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvS 364 (485)
T PLN02449 334 -----EWLKPYTDETIVELGKKGVKSLLAVPISFVS 364 (485)
T ss_pred -----CCCCCCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 2345566777777777777788888877654
No 161
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=53.35 E-value=1.1e+02 Score=29.12 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=71.8
Q ss_pred ccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCC
Q 009475 223 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (534)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg 302 (534)
||..-| |+..+++.|+..|=|-- .+ +..|.. ..+.+-.+.|++.||+|=. .|-+..
T Consensus 15 ~~qg~I---Dw~~v~~~gi~Fv~iKA-----TE---G~~~~D---~~f~~n~~~A~~~Gl~vGa-YHf~~~--------- 70 (190)
T cd06419 15 QDDGYI---DFNSLQSNGISFVYLRA-----TQ---GASYFD---DNFLSNFSRAQGTGLSVGV-IHTFSF--------- 70 (190)
T ss_pred CCCCcc---CHHHHHhCCCeEEEEEe-----ec---CCCccC---hhHHHHHHHHHHCCCCEEE-EEEeec---------
Confidence 454433 78889999988776632 11 222221 2467778889999998811 121100
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 303 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
.....+++..+++.+...-.+-|-++-+|... .. ..+.+.+.++.++.++.|++.....+||..
T Consensus 71 --------~~~~~~QA~~F~~~v~~~~~~lp~vlD~E~~~--~~-~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 71 --------SSTAAAQYRYFIRKVGNNTGNLPIAIYVSYYG--DY-NPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred --------CCCHHHHHHHHHHhCCCCCCCCCeEEEEecCC--CC-CCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 01234456666666554334455555455322 11 145788999999999999998777777765
No 162
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=53.13 E-value=16 Score=37.89 Aligned_cols=63 Identities=32% Similarity=0.407 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 226 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 226 ~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
..++++.++.|++.|++ +||-++...+.+..-...+. .-..+.+.++++.++++||.|..++-
T Consensus 113 d~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 113 EFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred CcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 45789999999999987 35555544332210000111 12577888999999999999888754
No 163
>PTZ00333 triosephosphate isomerase; Provisional
Probab=52.35 E-value=1.1e+02 Score=30.82 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
|=-...|++.|++.|=|- +.+.. .+..+.-+.+.+-+..|.++||.+||-+-
T Consensus 79 evS~~mL~d~G~~~viiG-----HSERR---~~f~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 79 EISAEMLKDLGINWTILG-----HSERR---QYFGETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred cCCHHHHHHcCCCEEEEC-----ccccc---CcCCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 445678899999998772 22221 12223446788899999999999999865
No 164
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=52.05 E-value=1.5e+02 Score=30.76 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCC----CCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPT----PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~----~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~ 305 (534)
.+.++++++.|+|+-=. -.--||. --++|.+..++.|+++++.|+++|+..+.-+| ||....
T Consensus 18 ~~l~~f~~~~kmN~YiY----APKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ais--Pg~~~~-------- 83 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIY----APKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAIS--PGLDIC-------- 83 (306)
T ss_dssp HHHHHHHHHTT--EEEE------TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEB--GTTT----------
T ss_pred HHHHHHHHHcCCceEEE----CCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEEC--cccccc--------
Confidence 46788899999996532 0001111 01456667899999999999999999999999 332110
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYAN 331 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~ 331 (534)
+ ...+....+.+++.+-|.-
T Consensus 84 ----~--s~~~d~~~L~~K~~ql~~l 103 (306)
T PF07555_consen 84 ----Y--SSEEDFEALKAKFDQLYDL 103 (306)
T ss_dssp ----T--SHHHHHHHHHHHHHHHHCT
T ss_pred ----c--CcHHHHHHHHHHHHHHHhc
Confidence 1 2345666677777766654
No 165
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.64 E-value=1.5e+02 Score=29.92 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEE
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
.++++.++.|+++|++.|-+.+. . ++.--..+. ...++..-++++.++++||.|...
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E---~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD---T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc---C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 57899999999999999888653 1 111001111 236777788999999999997553
No 166
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=51.63 E-value=32 Score=35.04 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
++-|+.++++|+.-|.|-+ ++. -.+...+.++++++.|.+|.|- ||+|..
T Consensus 109 ~~~f~~~~~~Gv~GvKidF-----~~~-----d~Q~~v~~y~~i~~~AA~~~Lm--vnfHg~ 158 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF-----MDR-----DDQEMVNWYEDILEDAAEYKLM--VNFHGA 158 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SS-----TSHHHHHHHHHHHHHHHHTT-E--EEETTS
T ss_pred HHHHHHHHHcCCCEEeeCc-----CCC-----CCHHHHHHHHHHHHHHHHcCcE--EEecCC
Confidence 7889999999999999843 332 1345789999999999999875 589975
No 167
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=51.12 E-value=37 Score=41.89 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCccEEEe-CcccccccCCCCCCCC--------C------CchHHHHHHHHHHHHHC-CCEEEEEc---CC
Q 009475 230 DEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPF--------V------GGSSKVLDNAFDWAEKY-GVKVIVDL---HA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~w~~~~~~~~~~~--------~------~~~l~~ld~~v~~a~~~-Gl~VIlDl---H~ 290 (534)
++.++.|+++|+|.|-+ ||.-- . + .+.+| + ++..+.++++|+.+++. ||++|+|+ |.
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~~--G-~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHT 210 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQEL--G-G-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHT 210 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCccC--C-C-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeeccc
Confidence 78999999999999998 44210 0 0 11121 1 14678899999999995 99999997 65
Q ss_pred CCC
Q 009475 291 APG 293 (534)
Q Consensus 291 ~pG 293 (534)
+..
T Consensus 211 a~d 213 (1464)
T TIGR01531 211 ANN 213 (1464)
T ss_pred ccC
Confidence 543
No 168
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=51.02 E-value=1.1e+02 Score=27.13 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=44.7
Q ss_pred ccceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceE-EEEee---CCcEEEeecCCCCceEEEeecC
Q 009475 64 DGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFY-NFRVN---NKQFIGLENQGQGNGLVAVSNT 139 (534)
Q Consensus 64 ~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~-~~~~~---n~~~v~~~~~g~~~~~~a~~~~ 139 (534)
+...|.||++..++|||-..-| .|.+.+ .-.-|......+.++-+ .+++. .+-||..+.. |..--+.++.
T Consensus 38 ~~g~v~i~~v~s~~YLCmn~~G--~ly~s~--~~~~dC~F~E~~~~n~Y~~y~S~~~~~~~ylal~~~--G~~rr~~~~~ 111 (123)
T cd00058 38 AVGVVSIKGVASCRYLCMNKCG--KLYGSK--GFTEECLFREELLENNYNTYASAKYRRRWYLALNKK--GRPRRGQLTK 111 (123)
T ss_pred CCCEEEEEEcccceEEEECCCC--CEEECC--CCCCCCEEEEEEccCCcEEEEEcccCCCcEEEECCC--CCCccccccC
Confidence 4578999999999999999866 455555 33445544444444433 44444 3689999875 3334444444
Q ss_pred C
Q 009475 140 A 140 (534)
Q Consensus 140 ~ 140 (534)
+
T Consensus 112 ~ 112 (123)
T cd00058 112 K 112 (123)
T ss_pred C
Confidence 3
No 169
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=50.79 E-value=1.5e+02 Score=26.34 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=44.9
Q ss_pred ceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceE-EEEee-CC--cEEEeecCCCCceEEEeecCCC
Q 009475 66 TQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFY-NFRVN-NK--QFIGLENQGQGNGLVAVSNTAG 141 (534)
Q Consensus 66 ~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~-~~~~~-n~--~~v~~~~~g~~~~~~a~~~~~~ 141 (534)
..|.||++..++|||-..-| .|.+... . .-|......+.++.+ .+.+. +. -||..+.. |..--+.++.++
T Consensus 44 g~V~ik~~~s~~YLCmn~~G--~ly~s~~-~-~~dC~F~E~~~~n~y~~y~S~~~~~~~ylal~~~--G~~r~~~~t~~~ 117 (126)
T smart00442 44 GVVAIKGVASCRYLCMNKCG--KLYGSKN-F-TEDCVFREEMEENGYNTYASAKYRKRWYVALNKK--GRPRRGQKTKPL 117 (126)
T ss_pred CEEEEEEcccceEEEECCCC--CEEEccc-C-CCCcEEEEEeccCCeEEEEEcccCCceEEEECCC--CCEeEcccCCCC
Confidence 57999999999999998876 5555443 2 355555555554433 33433 44 68888865 444555555554
Q ss_pred C
Q 009475 142 Y 142 (534)
Q Consensus 142 ~ 142 (534)
.
T Consensus 118 ~ 118 (126)
T smart00442 118 Q 118 (126)
T ss_pred C
Confidence 3
No 170
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=50.29 E-value=2.9e+02 Score=28.14 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=73.9
Q ss_pred HHHHHHHhCC--ccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCC--CC-------CCC-
Q 009475 231 EDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG--SQ-------NGN- 298 (534)
Q Consensus 231 ~d~~~ia~~G--~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG--~q-------ng~- 298 (534)
+.++.+++.| ++++=|-++|..... ...-.+++..+...+.+++..++.|+++++-+|-.-. +. ++.
T Consensus 28 ~~~~~~~~~~iP~d~~~lD~~w~~~~~-~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~ 106 (308)
T cd06593 28 EFADGMRERNLPCDVIHLDCFWMKEFQ-WCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYL 106 (308)
T ss_pred HHHHHHHHcCCCeeEEEEecccccCCc-ceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeE
Confidence 4455677888 555666666642111 0012334455566899999999999999998873311 10 000
Q ss_pred --CCCCCCCCCCCCC------hhhHHHHHHHHHHHHHHhcCCCeEEEEE-eccCCCCCCC------ChHHH-----HHHH
Q 009475 299 --EHSATRDGFQEWG------DSNVADTVAVIDFLAARYANRPSLAAIE-LINEPLAPGV------ALDTL-----KSYY 358 (534)
Q Consensus 299 --~~sg~~~g~~~W~------~~~~~~~~~~w~~lA~ryk~~~~vlg~e-L~NEP~~~~~------~~~~~-----~~~~ 358 (534)
+..|.......|. +....++.+.|....+++.+.. |-++= =+|||...+. ....+ ..+.
T Consensus 107 v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~G-id~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~ 185 (308)
T cd06593 107 VKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMG-VDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYN 185 (308)
T ss_pred EECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhC-CcEEecCCCCCCCccccccCCCCcceeeeHHHHHHH
Confidence 0011110001121 2333455566665555554421 21221 2578653221 11111 3456
Q ss_pred HHHHHHHHhcCCc-eEEEEe
Q 009475 359 KAGYDAVRKYTST-AYVIMS 377 (534)
Q Consensus 359 ~~~~~aIR~~~p~-~~Iiv~ 377 (534)
+.+++++|+..++ +++++.
T Consensus 186 ~~~~~~~~~~~~~~r~~~~~ 205 (308)
T cd06593 186 KAVYEATKEVKGEGEAVVWA 205 (308)
T ss_pred HHHHHHHHHhcCCCCeEEEE
Confidence 7788889988776 466665
No 171
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=50.25 E-value=18 Score=40.29 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 225 DSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 225 ~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
...++++.++.|+++|+|.|=|-+ ..+.+..- .... ....+.+.++++.++++|++|.+||-
T Consensus 201 PD~i~~e~L~~L~~~G~~rVslGV--QS~~d~VL-~~inRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 201 PDYCREEHIDRMLKLGATRVELGV--QTIYNDIL-ERTKRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 346899999999999998555433 22211100 0011 23578888999999999999877764
No 172
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.17 E-value=70 Score=32.40 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+.++|++...+.|+..|||-++. ..++.+...++.|+++|+.|.+.+..
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDAL--------------NDVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecC--------------ChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46889999999999999993321 12678999999999999999876653
No 173
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.76 E-value=28 Score=34.85 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+.-++..+.+|.+.||+| ++.....+.+ +...+...+.|+++.+.|+++||++.|-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 566777889999999986 2211111111 1111235677889999999999999998874
No 174
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.96 E-value=1.2e+02 Score=32.76 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCccEEEe-Cccc-------ccccCCCC--C---CCCCCchHHHHHHHHHHHH-HCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRI-PVGW-------WIANDPTP--P---KPFVGGSSKVLDNAFDWAE-KYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~-------w~~~~~~~--~---~~~~~~~l~~ld~~v~~a~-~~Gl~VIlDlH 289 (534)
++.|+.+++.|+|.|-+ |+.- ....+.-. + .+-.+..++.+.++|..++ ++||.+|.|++
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 78899999999999997 3321 01111000 0 0001235788999998874 79999999984
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=48.37 E-value=33 Score=34.40 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++-++..+.+|.+.||++-.-. ..++ ..........+.|.++++.|+++|+++.|-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYDV-YYEE-HDEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecCccc-ccCc-CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 5677888999999999863210 0011 001111236778889999999999999998773
No 176
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.30 E-value=20 Score=36.75 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=42.5
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
+.+|++...+.|++.||+.++--.......-..-.+..++.+.++|++|+++|+.|...+-
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 6889999999999999997653111000000111234788899999999999999976554
No 177
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.75 E-value=1.9e+02 Score=28.65 Aligned_cols=93 Identities=11% Similarity=0.171 Sum_probs=55.9
Q ss_pred HHHhCCccEEEeCccc-c--cccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC
Q 009475 235 FLSSNGINAVRIPVGW-W--IANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG 311 (534)
Q Consensus 235 ~ia~~G~N~VRIPv~~-w--~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~ 311 (534)
.+++.|+...=+.++. + .+..+++ ...+..++.++++++.|++.|..+|. ++..+.. .. +. .
T Consensus 60 ~l~~~Gl~i~~~~~~~~~~~~~~~~d~--~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~~------~~-----~~-~ 124 (284)
T PRK13210 60 AIYETGVRIPSMCLSGHRRFPFGSRDP--ATRERALEIMKKAIRLAQDLGIRTIQ-LAGYDVY------YE-----EK-S 124 (284)
T ss_pred HHHHcCCCceEEecccccCcCCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCEEE-ECCcccc------cc-----cc-c
Confidence 4567888766543221 1 1111111 11234688999999999999999986 3322100 00 00 1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCeEEEEEecc
Q 009475 312 DSNVADTVAVIDFLAARYANRPSLAAIELIN 342 (534)
Q Consensus 312 ~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N 342 (534)
+...+.+++.++.+++..+.+.-.+++|.+.
T Consensus 125 ~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 125 EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 2456778888899988888777677788653
No 178
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=47.30 E-value=19 Score=36.14 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=40.9
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
++++++...+.|++.||+.++.........-..-.+..++.+.++++.|+++|+.|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 588999999999999999764321100000000113467888999999999999987654
No 179
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.14 E-value=20 Score=35.55 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
+++++.+++.|+..|||++.-........-..-.++.++.+.+.++.|+++|+.|.+.+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 789999999999999998753210000000001124688899999999999999999884
No 180
>PRK09936 hypothetical protein; Provisional
Probab=47.10 E-value=1e+02 Score=31.59 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 294 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~ 294 (534)
++-++.++..|++++=|-..-+ .+. .|. +.-..|.+.++.|.+.||+|+|-|+..|..
T Consensus 41 q~~~~~~~~~G~~tLivQWt~y--G~~----~fg-~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y 98 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQWTRY--GDA----DFG-GQRGWLAKRLAAAQQAGLKLVVGLYADPEF 98 (296)
T ss_pred HHHHHHHHHcCCcEEEEEeeec--cCC----Ccc-cchHHHHHHHHHHHHcCCEEEEcccCChHH
Confidence 5678889999999998865422 221 221 234568899999999999999999988753
No 181
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=47.10 E-value=29 Score=39.88 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCccEEEe-Cccccccc-------CCCCCCCCCC--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRI-PVGWWIAN-------DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~w~~~-------~~~~~~~~~~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+-+..++++|+.++=+ ||. ... |-..+..+.+ +..+-|.+++..+++.||.+|+|+
T Consensus 22 ~~~l~yl~~LGIShLY~SPIf--tA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI 88 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIF--TARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI 88 (889)
T ss_pred HHhhHHHHhcCchheeccchh--hcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe
Confidence 45678899999999876 441 111 1111122333 578999999999999999999998
No 182
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=46.76 E-value=22 Score=36.06 Aligned_cols=62 Identities=11% Similarity=0.016 Sum_probs=43.9
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+++|++...+.|+..|+++++-........-..-.+..++.+.+.+++|+++|+.|.+.+-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 58899999999999999987642110000001112347888899999999999999887754
No 183
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=46.51 E-value=91 Score=34.25 Aligned_cols=98 Identities=17% Similarity=0.318 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC--hhhHHHHHHHHHHHHHHhcCCCe--EEEEEec
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG--DSNVADTVAVIDFLAARYANRPS--LAAIELI 341 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~--~~~~~~~~~~w~~lA~ryk~~~~--vlg~eL~ 341 (534)
..+.+|.+++.|++.|++=||-|.+.|-. |...|. ...-+.++++.+.+-++|+|+-. |.||
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~-----------g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgY--- 155 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPI-----------GQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGY--- 155 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCC-----------CccccccccCCchhHHHHHHHHHHHhCCeEEEEeccC---
Confidence 46889999999999999999999988632 111122 12245688999999999999743 3333
Q ss_pred cCCCCC--C----CChHHHH------------------HHHHHHHHHHHhcCCceEEEEe
Q 009475 342 NEPLAP--G----VALDTLK------------------SYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 342 NEP~~~--~----~~~~~~~------------------~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
=|=|.. + .+...++ +-.-+.++.+|+++.+.+|+-+
T Consensus 156 PEghpe~~~~~~~~Dl~yLk~KvdaGaDFIiTQlFYd~e~flkfv~~cR~~gi~~PIvPG 215 (590)
T KOG0564|consen 156 PEGHPEAPSHDYLADLPYLKEKVDAGADFIITQLFYDVETFLKFVKDCRAAGINVPIVPG 215 (590)
T ss_pred CCCCcCCcccchhhhhHHHHHhhcccchhhhhhhhcCHHHHHHHHHHHHHhCCCCCcccc
Confidence 122211 0 0111111 2234567889999998888754
No 184
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=46.27 E-value=58 Score=34.14 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
-.|.++.+.+.++|++.|++-++.=.......-....-.++..+-++.+.++++++.||.|
T Consensus 158 V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 158 VVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred ccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 3689999999999999999987642211111000011137899999999999999999998
No 185
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=46.22 E-value=94 Score=31.82 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCC
Q 009475 271 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATR-DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV 349 (534)
Q Consensus 271 d~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~-~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~ 349 (534)
.++++.|+++|++|++-+....++ + .+.. .....=.+..++++++-+..++++|+=+ |++|-=|+.. ..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~--~---~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~D----GidiDwE~~~-~~ 117 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNG--N---FDSELAHAVLSNPEARQRLINNILALAKKYGYD----GVNIDFENVP-PE 117 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCC--C---CCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCC----cEEEecccCC-HH
Confidence 578999999999999999764321 0 0000 0000001345566777666777777433 3333224332 22
Q ss_pred ChHHHHHHHHHHHHHHHhcC
Q 009475 350 ALDTLKSYYKAGYDAVRKYT 369 (534)
Q Consensus 350 ~~~~~~~~~~~~~~aIR~~~ 369 (534)
+.+.+..+.+++..++++.+
T Consensus 118 d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 118 DREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 45667788888888887654
No 186
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=45.63 E-value=34 Score=33.92 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++-++..+++|...|+++.++.. .....+.......+.|.++.+.|+++|+++.+-.|.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56777788999999999876421 110011111234577788899999999999998764
No 187
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.41 E-value=2.3e+02 Score=28.16 Aligned_cols=118 Identities=10% Similarity=0.044 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Q 009475 265 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEP 344 (534)
Q Consensus 265 ~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP 344 (534)
..++.+++.++.|++.|..+|. ++..+.. . +.. .+...+.+.+.++.+++.-+.+.-.+++|..+.+
T Consensus 96 ~~~~~~~~~i~~a~~lG~~~i~-~~~~~~~---~-------~~~--~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~ 162 (283)
T PRK13209 96 QALEIMRKAIQLAQDLGIRVIQ-LAGYDVY---Y-------EQA--NNETRRRFIDGLKESVELASRASVTLAFEIMDTP 162 (283)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ECCcccc---c-------ccc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCc
Confidence 4688899999999999999876 4432110 0 000 0345567788888888877777777888866433
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcC-CceEEEEeCCC---CCCChhhhhcccCCCceEEEEEeeccc
Q 009475 345 LAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELLSFASGLSRVVIDVHYYNL 407 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Iiv~~~~---~~~~~~~~~~~~~~~~nvv~d~H~Y~~ 407 (534)
.. .+ ..++.+.|++++ |+.-+.+..+. ...+...... ....-+..+|.-..
T Consensus 163 ~~--~~-------~~~~~~ll~~v~~~~lgl~~D~~h~~~~~~~~~~~i~---~~~~~i~~vHikD~ 217 (283)
T PRK13209 163 FM--NS-------ISKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQMELQ---AGIGHIVAFHVKDT 217 (283)
T ss_pred cc--CC-------HHHHHHHHHHhCCCccceEeccchHHHhcCCHHHHHH---hCcCcEEEEEeccC
Confidence 21 12 224556666666 44445544221 1112222222 22345667888754
No 188
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.33 E-value=3.5e+02 Score=29.31 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCccEEEeCcccc--ccc----CCCC-CCCC---CCchHHHHHHHHHHHHHCCCEEEEEc-----------
Q 009475 230 DEDFKFLSSNGINAVRIPVGWW--IAN----DPTP-PKPF---VGGSSKVLDNAFDWAEKYGVKVIVDL----------- 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w--~~~----~~~~-~~~~---~~~~l~~ld~~v~~a~~~Gl~VIlDl----------- 288 (534)
.+.++.+.++|||+|=.-|.-. .+. -|.. ..|. .....+-|..+|+.|+++||.|+-=+
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~ 146 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP 146 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCCh
Confidence 5778899999999997655211 010 1110 0111 23578889999999999999997411
Q ss_pred -CCC-CC-CC---CCCCCCCCCCC--CCCCC----hhhHHHHHHHHHHHHHHhcCCC----eEEEEE-------------
Q 009475 289 -HAA-PG-SQ---NGNEHSATRDG--FQEWG----DSNVADTVAVIDFLAARYANRP----SLAAIE------------- 339 (534)
Q Consensus 289 -H~~-pG-~q---ng~~~sg~~~g--~~~W~----~~~~~~~~~~w~~lA~ryk~~~----~vlg~e------------- 339 (534)
|.. |. .. .+.-.. ...+ ...|. ++.++...++...+.++|.=+. ....++
T Consensus 147 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y 225 (418)
T COG1649 147 LTKRHPHWLTTKRPGWVYV-RHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLY 225 (418)
T ss_pred hHhhCCCCcccCCCCeEEE-ecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHH
Confidence 100 00 00 000000 0001 12343 5667778889999999997542 222111
Q ss_pred ---eccCCCCCCCChH--------HHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 340 ---LINEPLAPGVALD--------TLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 340 ---L~NEP~~~~~~~~--------~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
-.+.|- .+.. ...++++++..+|+++.|+..+-++.
T Consensus 226 ~~et~~~~~---~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 226 RYETGKGPP---SNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred HhhccCCCC---CCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 111111 1223 33477899999999999998877765
No 189
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.09 E-value=28 Score=36.15 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=49.4
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG 293 (534)
+.+-..++|+++|.++|.+=+-| +|+.+........+.++++.+.|++.+|-.+|.+-.+|.
T Consensus 108 l~~ws~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 108 LVEWSVKRLKEAGADAVKFLLYY----DVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 44557899999999999996633 444333444568899999999999999999999998864
No 190
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=44.97 E-value=65 Score=35.23 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEEcC-CCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH-AAP 292 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlDlH-~~p 292 (534)
++++.++.|+++|++.|-|.+. ...+.. -..+. ....+.+.++++.++++||.|.+++- +.|
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGiE--S~s~~~-L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGYE--SGDQQI-LKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcCC--CCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 6899999999999998777653 211100 00111 12567788999999999999988863 444
No 191
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.88 E-value=23 Score=37.35 Aligned_cols=61 Identities=11% Similarity=-0.081 Sum_probs=43.4
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
+.+|++...+.|+..|+|.++--.......-..-.++.++.+.++|+.|+++|++|.+.+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 7899999999999999997753111000000111245788899999999999999976554
No 192
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=44.86 E-value=3.2e+02 Score=26.98 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccC-CCC
Q 009475 268 KVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA 346 (534)
Q Consensus 268 ~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NE-P~~ 346 (534)
..+...++.|+++|++|++-+.....+. .+ ...=.+..++.+++-...+.++|.=+ |++|-=| |..
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~----~~-----~~~~~~~~r~~fi~~lv~~~~~~~~D----GIdiDwE~~~~ 112 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPE----FT-----AALNDPAKRKALVDKIINYVVSYNLD----GIDVDLEGPDV 112 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCc----ch-----hhhcCHHHHHHHHHHHHHHHHHhCCC----ceeEEeeccCc
Confidence 4677889999999999999886431110 00 00001455666665555555666432 3333333 321
Q ss_pred CCCChHHHHHHHHHHHHHHHhc
Q 009475 347 PGVALDTLKSYYKAGYDAVRKY 368 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aIR~~ 368 (534)
..+.+..+.+++.+++++.
T Consensus 113 ---~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 113 ---TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred ---cHhHHHHHHHHHHHHHhhc
Confidence 1456677777777777654
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=44.81 E-value=3.2e+02 Score=26.92 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=82.8
Q ss_pred CHHHHH-HHHhCCccEE--EeCcccccccC-CCCCCC-CCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCC
Q 009475 229 TDEDFK-FLSSNGINAV--RIPVGWWIAND-PTPPKP-FVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 303 (534)
Q Consensus 229 te~d~~-~ia~~G~N~V--RIPv~~w~~~~-~~~~~~-~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~ 303 (534)
+.+.++ .+++.|+... =+|++.|.... +....+ ..+...+.++++++.|++.|..+|.- + +|...
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~-~--~g~~~------- 110 (258)
T PRK09997 41 DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINC-L--VGKTP------- 110 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEE-C--CCCCC-------
Confidence 344454 4567888764 24555432111 000001 11234678999999999999997753 2 12100
Q ss_pred CCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCC-ceEEEEeCCCC
Q 009475 304 RDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMSNRLG 381 (534)
Q Consensus 304 ~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Iiv~~~~~ 381 (534)
..+. ....+.+.+.++.+++..++..-.+++|.+|-+..+.. .-.-.+++.+.++++++ +.-+.+...+.
T Consensus 111 ----~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~----~~~~~~~~~~ll~~v~~~~v~l~~D~~h~ 182 (258)
T PRK09997 111 ----AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGF----HLTGTRQALKLIDDVGCCNLKIQYDIYHM 182 (258)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCC----ccCCHHHHHHHHHHhCCCCEEEEeEHHHh
Confidence 0111 23456677888888888888777899998886421111 11223344556677765 44455543221
Q ss_pred ---CCChhhhhcccCCCceEEEEEeecc
Q 009475 382 ---PADHKELLSFASGLSRVVIDVHYYN 406 (534)
Q Consensus 382 ---~~~~~~~~~~~~~~~nvv~d~H~Y~ 406 (534)
..++..+... ...-+.-+|.-.
T Consensus 183 ~~~g~~~~~~~~~---~~~ri~~vHikD 207 (258)
T PRK09997 183 QRMEGELTNTMTQ---WADKIGHLQIAD 207 (258)
T ss_pred hhcCCcHHHHHHH---hhCcccEEEeCC
Confidence 1233333322 123455677754
No 194
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=44.54 E-value=21 Score=36.37 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=43.7
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
.+.+++...+.|++.|+|.++-........-..-.+..++.+.++++.|+++|++|.+.+-.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 36789999999999999977431110000001112458899999999999999999988764
No 195
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=44.39 E-value=2.6e+02 Score=29.21 Aligned_cols=179 Identities=12% Similarity=0.044 Sum_probs=90.4
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCc--hHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGG--SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~--~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~ 305 (534)
.+++.++.||++|++.+ +..-....++.--..+.++ ..+..-+.++.|++.||++--.+- .
T Consensus 139 ~~~e~l~~LkeAGl~~i--~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i---------------~ 201 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSM--PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIM---------------Y 201 (343)
T ss_pred CHHHHHHHHHHhCcccc--cCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEE---------------E
Confidence 46889999999999965 4211111111000011111 455556899999999998732211 1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCC----CC-hHHHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG----VA-LDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~----~~-~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~ 380 (534)
|.+ .........+.+++.|...+.+...++-+-.++ |..+- .. ...=..-+-+++...|=.-|+..+-+..+|
T Consensus 202 G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~-~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~ 279 (343)
T TIGR03551 202 GHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVH-YNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW 279 (343)
T ss_pred ecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccC-CCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc
Confidence 111 112445566677777777776654443222222 21110 00 000123455677788888888765566555
Q ss_pred CCCChhh-h--hcc-cCCCceEEEEEeecccCCCCC-CCCchhhhHHHHH
Q 009475 381 GPADHKE-L--LSF-ASGLSRVVIDVHYYNLFSNNF-NGLNVQQNIDYVN 425 (534)
Q Consensus 381 ~~~~~~~-~--~~~-~~~~~nvv~d~H~Y~~f~~~~-~~~~~~~~i~~i~ 425 (534)
....... - +.. .+....+++.-|.+...+... ..++.++.+..+.
T Consensus 280 ~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~ 329 (343)
T TIGR03551 280 VKLGKKLAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIE 329 (343)
T ss_pred cccCHHHHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHH
Confidence 3322211 1 111 244556788877775544222 2345555554443
No 196
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=44.32 E-value=24 Score=34.76 Aligned_cols=52 Identities=29% Similarity=0.565 Sum_probs=41.4
Q ss_pred ccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 223 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
.|+.-+.|.||..-++-|+.+|=| .|-.-+++++..++|+.|+.+||..+|.
T Consensus 212 AWDEs~readF~~e~e~gv~avVI-------------KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 212 AWDESLREADFAFEAEPGVRAVVI-------------KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred eecchhcccccccccCCCceEEEe-------------cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 477777777888778888777766 1334478999999999999999999885
No 197
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=43.92 E-value=37 Score=31.63 Aligned_cols=30 Identities=33% Similarity=0.728 Sum_probs=17.4
Q ss_pred eeEEEeecC---CCceEEeccCCCCCcceEEEEEec
Q 009475 76 QKYIAAESG---GGTIVVANRTSASGWETFRLWRVN 108 (534)
Q Consensus 76 ~~~~~a~~~---g~~~~~anr~~~~~wetf~~~~~~ 108 (534)
=||++.|++ +|+.++| +...|+.|+++=++
T Consensus 22 TrYL~v~~~~~~~g~~f~a---s~~~W~~F~I~lvd 54 (158)
T PF09270_consen 22 TRYLHVENGASGHGPRFVA---SSTQWDPFTIHLVD 54 (158)
T ss_dssp EEEEEEETT------EEEE---ESS----EEEEEE-
T ss_pred ceeeecCCCcccceeeeee---ccCcccceEEEEec
Confidence 389999986 5556666 45689999999883
No 198
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=43.88 E-value=47 Score=35.17 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=41.3
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.++|++.+.+.|+..|||.++-........-..-.+..++.+.++|+.|+++|+.|.+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 589999999999999999775321100000001123467888899999999999987754
No 199
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=43.79 E-value=2.9e+02 Score=27.61 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEE---EEcCC-CCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI---VDLHA-APGSQNGNEHSATRD 305 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VI---lDlH~-~pG~qng~~~sg~~~ 305 (534)
++-+...|+.||+.|-+.|.- .+.. -...+ =.-+..-.++..+.++|+.+- |.-|. +| .|+++
T Consensus 21 ~erl~~AK~~GFDFvEmSvDE---sDeR-LaRLD-Ws~~er~~l~~ai~etgv~ipSmClSaHRRfP--------fGS~D 87 (287)
T COG3623 21 LERLALAKELGFDFVEMSVDE---SDER-LARLD-WSKEERLALVNAIQETGVRIPSMCLSAHRRFP--------FGSKD 87 (287)
T ss_pred HHHHHHHHHcCCCeEEEeccc---hHHH-HHhcC-CCHHHHHHHHHHHHHhCCCccchhhhhhccCC--------CCCCC
Confidence 788888999999999997742 0000 00000 012233457888899998761 22231 11 12221
Q ss_pred CCCCCChhhHHHHHHHHHH---HHHHhcCCC-eEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhc
Q 009475 306 GFQEWGDSNVADTVAVIDF---LAARYANRP-SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKY 368 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~---lA~ryk~~~-~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~ 368 (534)
+...++..++.++ ||...+=.. .+.|||+.-||.. .+.-++|.+.+-.+++-.
T Consensus 88 ------~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d----~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 88 ------EATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD----EETRQRFIEGLKWAVELA 144 (287)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC----HHHHHHHHHHHHHHHHHH
Confidence 4566777777764 565555443 5789999999985 456667766666666544
No 200
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=42.84 E-value=24 Score=37.29 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=42.6
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
..++|++...+.|+..|||.++-........-..-.+..++.+.++++.|+++|++|.+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 35899999999999999996543211000000011234688889999999999999988764
No 201
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.29 E-value=33 Score=35.65 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG 293 (534)
+.+-..++|+++|.++|.+=+-| +|+.+........+.++++.+.|++.+|-.+|.+-.+|.
T Consensus 106 l~~wS~~rike~GadavK~Llyy----~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 106 LDDWSAKRIKEEGADAVKFLLYY----DVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 34557899999999999996633 454443445568899999999999999999999998874
No 202
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=42.28 E-value=85 Score=32.43 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCccEEEeC-cccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC-CCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIP-VGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-PGSQNGNEHSATRDGF 307 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIP-v~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~-pG~qng~~~sg~~~g~ 307 (534)
.+..+.+++.|+|.|=|- |+. .+.-..+.+++.+.++-+..+.|||+|-|.+.-+ |-.-. +.
T Consensus 60 ~~YARllASiGINgvvlNNVNa-------~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lg---------gL 123 (328)
T PF07488_consen 60 RDYARLLASIGINGVVLNNVNA-------NPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELG---------GL 123 (328)
T ss_dssp HHHHHHHHHTT--EEE-S-SS---------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTT---------S-
T ss_pred HHHHHHHhhcCCceEEeccccc-------ChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccC---------Cc
Confidence 456677899999999872 111 1112334689999999999999999999998643 21100 00
Q ss_pred CCCChhhHHHHHHHHHHHHH-HhcCCCeEEEEEecc----CCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 009475 308 QEWGDSNVADTVAVIDFLAA-RYANRPSLAAIELIN----EPLAPGVALDTLKSYYKAGYDAVRKYTS 370 (534)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~-ryk~~~~vlg~eL~N----EP~~~~~~~~~~~~~~~~~~~aIR~~~p 370 (534)
..- +..-++..+.|+..++ -|+--|.+.||=+.= +|..... .....+-..-+.+|++-++.
T Consensus 124 ~Ta-DPld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~Y-gRthAdGANmlA~Al~P~GG 189 (328)
T PF07488_consen 124 PTA-DPLDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTY-GRTHADGANMLARALKPHGG 189 (328)
T ss_dssp S----TTSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGG-T--HHHHHHHHHHHHGGGT-
T ss_pred CcC-CCCCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCccc-CCCchhhHHHHHHHhhccCC
Confidence 000 1223467778876655 477677777775543 2322111 12345556666777776654
No 203
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=42.19 E-value=61 Score=32.72 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=40.8
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
.+.+|++...+.|+..|||.+.. ..++.+.++++.|+++|+.|.+.+-..
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~a 132 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMAI 132 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 45788999999999999995521 257888999999999999999887654
No 204
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=41.69 E-value=38 Score=33.37 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
++-++..+++|...||++.+... .++ +.+.......+.|.++.+.|+++||.+.|-.|..
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~~-~~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKRP-AGV-SPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 45677888999999999765321 000 0011112245678889999999999999987743
No 205
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=41.27 E-value=1.2e+02 Score=27.36 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhc--CCCeEEEEEeccCCCCCCCChHHHHHH
Q 009475 280 YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVALDTLKSY 357 (534)
Q Consensus 280 ~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk--~~~~vlg~eL~NEP~~~~~~~~~~~~~ 357 (534)
....+|+..|+.|-.... .| +.+.++..+..+.|+++.. ..+..++|.-.-=|. +-+...
T Consensus 17 ~~~~llfsaHgiP~~~~~-------~g-----d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~------~Wl~P~ 78 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK-------KG-----DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPG------EWLEPS 78 (135)
T ss_pred CCCEEEEEcCCCHHHHhh-------CC-----CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCC------CCCCCC
Confidence 578999999999854211 11 2567888899999999987 555667776322121 112334
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCC
Q 009475 358 YKAGYDAVRKYTSTAYVIMSNRLG 381 (534)
Q Consensus 358 ~~~~~~aIR~~~p~~~Iiv~~~~~ 381 (534)
.+++++.+.+.+-++++++..++-
T Consensus 79 ~~~~l~~l~~~G~~~i~v~p~gF~ 102 (135)
T cd00419 79 TDDALEELAKEGVKNVVVVPIGFV 102 (135)
T ss_pred HHHHHHHHHHcCCCeEEEECCccc
Confidence 556666666667778888876554
No 206
>PRK14567 triosephosphate isomerase; Provisional
Probab=41.22 E-value=3.7e+02 Score=27.09 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
=-...|++.|++.|=|- +.+.. .+..+.-+.+.+-+..|.++||.+|+-+-
T Consensus 76 vS~~mLkd~G~~yviiG-----HSERR---~~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 76 ISARMLEDIGCDYLLIG-----HSERR---SLFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CCHHHHHHcCCCEEEEC-----ccccc---CccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34667899999998772 22221 22233456677888999999999999865
No 207
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=40.81 E-value=3.1e+02 Score=30.29 Aligned_cols=56 Identities=13% Similarity=0.306 Sum_probs=37.8
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCC--------CC-----CCCCCc---hHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPT--------PP-----KPFVGG---SSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~--------~~-----~~~~~~---~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
..+.++.|+...+|+.-- +..|.. -| +.|.+. .-+.+.++|+.|+-+||+|+..+-
T Consensus 200 IkrtLeaMa~nKLNVlHW-----HivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 200 IKRTLEAMAANKLNVLHW-----HIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred HHHHHHHHHhhhhceeEE-----EeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 366777888889998764 333321 01 112221 467789999999999999998764
No 208
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.00 E-value=2.3e+02 Score=26.74 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=66.0
Q ss_pred HHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCC
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 310 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W 310 (534)
-|++.+|+.|+..|=|-.. +. ..+.. ..++.-++.|++.||.|=+ .|-+..
T Consensus 15 id~~~vk~~gi~fviiKat-----eG---~~~~D---~~~~~~~~~a~~~Gl~vG~-Yhy~~~----------------- 65 (191)
T cd06413 15 IDWARVRAQGVSFAYIKAT-----EG---GDHVD---KRFAENWRGARAAGLPRGA-YHFFTF----------------- 65 (191)
T ss_pred cCHHHHHhCCCcEEEEEEc-----CC---CCccC---HHHHHHHHHHHHcCCceEE-EEEEec-----------------
Confidence 3789999999887766432 11 11211 3467778889999997621 221110
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 311 GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 311 ~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
.....+++..+++.+...-.+.|-++=+|--.... ...+...+.+..+.++++|++.....++|..
T Consensus 66 ~~~~~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~-~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 131 (191)
T cd06413 66 CRSGAEQAANFIRNVPKDPGALPPVVDVEWNGNSA-TCPSAEEVLAELQVFLDALEAHYGKRPIIYT 131 (191)
T ss_pred CCCHHHHHHHHHHhcCCCCCcCCeEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 00123455566666654333345455455321111 1235677888899999999986555555554
No 209
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=39.82 E-value=1.3e+02 Score=31.62 Aligned_cols=97 Identities=13% Similarity=-0.001 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCCh
Q 009475 272 NAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVAL 351 (534)
Q Consensus 272 ~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~ 351 (534)
..++.|+++|++|+-.++..+..+...-+. .-... +.....+++-+-.||+.|+=+.-. |+.=|.+. .....
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~~~--lL~~~---~~~~~~~a~kLv~lak~yGfDGw~--iN~E~~~~-~~~~~ 121 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWLED--FLKKD---EDGSFPVADKLVEVAKYYGFDGWL--INIETELG-DAEKA 121 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHHHH--HhccC---cccchHHHHHHHHHHHHhCCCceE--eeeeccCC-cHHHH
Confidence 457799999999999887554211000000 00000 123345666777788877655433 34334441 12346
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 352 DTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 352 ~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
+.+..|++.+.++.++..|...|+-
T Consensus 122 ~~l~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 122 KRLIAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 8899999999999999888876665
No 210
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=39.51 E-value=35 Score=35.46 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG 293 (534)
+-..++|+++|.++|.+=+-| +|+.+........+.++++.+.|++.+|--+|.+-.++.
T Consensus 109 ~~s~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~ 168 (325)
T TIGR01232 109 EWSAKRLKEQGANAVKFLLYY----DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDD 168 (325)
T ss_pred cccHHHHHHhCCCeEEEEEEe----CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 456899999999999996533 444333444558899999999999999999999988864
No 211
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=38.45 E-value=5.2e+02 Score=27.59 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=72.6
Q ss_pred CCHHHHHHHHhCCccEEEeCccc-ccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE--EEEcCCCCCCCCCCCCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATR 304 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~-w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V--IlDlH~~pG~qng~~~sg~~ 304 (534)
++++..+.+++.|+ .|=|.+.= -..-|-.....-..+.++++-+.++.++++++.+ ++-+|.
T Consensus 102 L~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~~-------------- 166 (378)
T COG0641 102 LNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVNR-------------- 166 (378)
T ss_pred cCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEch--------------
Confidence 78999999999999 88886641 1110100001112357999999999999999774 333331
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------CCChHHHHHHHHHHHHHHHhcCC
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTS 370 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p 370 (534)
.+.++..++.+.+++.. ...+--++++-..... ..+...+.+++.+..+..++.+-
T Consensus 167 --------~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~ 228 (378)
T COG0641 167 --------QNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDV 228 (378)
T ss_pred --------hHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 33445556666666544 2223223444433322 24568899999999999998873
No 212
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=37.97 E-value=34 Score=36.40 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=42.5
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.++|++...+.|++.|||.++-....-...-..-.+..++.+.++++.|++.|+.|.++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 488999999999999999765322100000001124578899999999999999998864
No 213
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=37.76 E-value=2.3e+02 Score=30.28 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=75.3
Q ss_pred CHHHHHHHHhCCccEEEeCcccc---cccCCCCCCCCC----CchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCC--
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWW---IANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNE-- 299 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w---~~~~~~~~~~~~----~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~-- 299 (534)
.++-++.+|++|+.-|=+---.. .+-+.. ..+|. +-..+.|.++++.|+++||++-+ .|+.....+...
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~-~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~-Y~S~~DW~~p~y~~ 160 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSK-YSNWNAVDTGPKRDLVGELADAVRKRGLKFGL-YHSLFDWFNPLYAG 160 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCC-CCCCcccCCCCCcchHHHHHHHHHHcCCeEEE-EcCHHHhCCCcccc
Confidence 45556778899999986633210 111111 11221 11568899999999999999998 343211100000
Q ss_pred CCCCCCCCCCCChhhHHH---HHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCce-EEE
Q 009475 300 HSATRDGFQEWGDSNVAD---TVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA-YVI 375 (534)
Q Consensus 300 ~sg~~~g~~~W~~~~~~~---~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~-~Ii 375 (534)
..........+ +...+. +..=++.|..+|+. .++=||.-.+-. ...| -.+++++.||+..|+. -|+
T Consensus 161 ~~~~~~~~~~~-~~~~~y~~~~~~Ql~ELit~Ygp--d~lWfD~~~~~~-----~~~~--~~~~l~~~~~~~qP~~~~vv 230 (384)
T smart00812 161 PTSSDEDPDNW-PRFQEFVDDWLPQLRELVTRYKP--DLLWFDGGWEAP-----DDYW--RSKEFLAWLYNLSPVKDTVV 230 (384)
T ss_pred ccccccccccc-hhHHHHHHHHHHHHHHHHhcCCC--ceEEEeCCCCCc-----cchh--cHHHHHHHHHHhCCCCceEE
Confidence 00000001111 122333 35667778888976 566588644211 1122 2567888899999975 234
Q ss_pred EeCCCC
Q 009475 376 MSNRLG 381 (534)
Q Consensus 376 v~~~~~ 381 (534)
+.++|.
T Consensus 231 vn~R~~ 236 (384)
T smart00812 231 VNDRWG 236 (384)
T ss_pred EEcccc
Confidence 455553
No 214
>PRK06256 biotin synthase; Validated
Probab=37.46 E-value=1.5e+02 Score=30.76 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~ 305 (534)
.++++.++.|+++|++.|=+.+. . .+.--.... ...++..-++++.+++.||.|...+- .|.
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~~lE--t--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl----------- 211 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNHNLE--T--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGI--IGM----------- 211 (336)
T ss_pred cCCHHHHHHHHHhCCCEEecCCc--c--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeE--EeC-----------
Confidence 37899999999999997655332 1 110000111 13567778899999999998744332 221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCC--CCChHHHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN-EPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N-EP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~ 380 (534)
..+.+...+....+.+ .+- ..+.+..++ .|..+ ..+... ..-+.+.+...|-.-|+..|.++++.
T Consensus 212 ------gEt~ed~~~~~~~l~~-l~~--~~v~i~~l~P~pGT~l~~~~~~~-~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 212 ------GESLEDRVEHAFFLKE-LDA--DSIPINFLNPIPGTPLENHPELT-PLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred ------CCCHHHHHHHHHHHHh-CCC--CEEeecccccCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCeeEecCch
Confidence 0234455566665542 332 222333333 12211 011111 22344567788999999988887543
No 215
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=37.14 E-value=39 Score=33.89 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
+.-++..+++|.+.|+++.+.... .+.+.......+.+.++++.|+++||++.|-.|..+.. +.
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~-----~~-------- 151 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGN-----EI-------- 151 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-----CC--------
Confidence 567778889999999997664211 01111112357888889999999999999988864321 00
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeE-EEEEeccCCCCCC--CChHHHHHHHHHHHHHH
Q 009475 310 WGDSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAPG--VALDTLKSYYKAGYDAV 365 (534)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~v-lg~eL~NEP~~~~--~~~~~~~~~~~~~~~aI 365 (534)
....+.+.++++.+- ..|.+ +-+|+.|=-.... .+++.+..++.+..+.|
T Consensus 152 --~~t~~~~~~li~~v~----~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i 204 (279)
T cd00019 152 --GSSFEELKEIIDLIK----EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVI 204 (279)
T ss_pred --CCCHHHHHHHHHhcC----CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHh
Confidence 123455556665553 24433 4578777211100 11344666666655544
No 216
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.27 E-value=78 Score=33.17 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=39.2
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
+.+|++...+.|++.|||.++.- ..+.+.+.+++|++.|+.|.+.+-..
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~a 138 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMMS 138 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57899999999999999976321 12457899999999999998877543
No 217
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=36.09 E-value=93 Score=32.43 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 306 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g 306 (534)
..+++-++.|.++|++-||+..+- + .....+..-+.+.-|+++|+.|=+.+-+.||-
T Consensus 121 ~~~~e~l~~L~eAGLDEIRfHp~~-------~----~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~------------ 177 (353)
T COG2108 121 LATEEALKALAEAGLDEIRFHPPR-------P----GSKSSEKYIENLKIAKKYGMDVGVEIPAIPGE------------ 177 (353)
T ss_pred cCCHHHHHHHHhCCCCeEEecCCC-------c----cccccHHHHHHHHHHHHhCccceeecCCCcch------------
Confidence 468999999999999999995431 1 12345666778888899999998888877742
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhc-CCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhc
Q 009475 307 FQEWGDSNVADTVAVIDFLAARYA-NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKY 368 (534)
Q Consensus 307 ~~~W~~~~~~~~~~~w~~lA~ryk-~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~ 368 (534)
.++..++. +++..++ +. ==+||-.- +...+.+++.+.+...+..
T Consensus 178 --------e~~i~e~~-~~~~~~~~~F------lNiNELE~---sE~N~~~l~~~gy~~~~~~ 222 (353)
T COG2108 178 --------EEAILEFA-KALDENGLDF------LNINELEF---SENNYENLLERGYKISDDG 222 (353)
T ss_pred --------HHHHHHHH-HHHHhcccce------eeeeeeee---ccchHHHHHhcCceeccCC
Confidence 12333333 3333444 32 23477653 4456788888877776543
No 218
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=35.92 E-value=55 Score=32.57 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++-++..+.+|..+|+++-+.-. ... ..+...+...+.|+++.+.|+++||++.+-.|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~-~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAG-YLT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 56677889999999999653210 011 111112345678899999999999999998774
No 219
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=35.85 E-value=3.1e+02 Score=24.29 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=53.1
Q ss_pred eeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEee-CCcEEEeecCCCCceEEEeecCCCCCce
Q 009475 67 QVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSET 145 (534)
Q Consensus 67 ~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~-n~~~v~~~~~g~~~~~~a~~~~~~~~Et 145 (534)
.+||=+ .+|.||---.- ..|-..++.-+..--|++..++.+.+.+|.. .+.|+|.+.- +.|-+... +..-..
T Consensus 4 ~~~Ly~-~~~~~L~I~~~--G~V~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~---G~ly~s~~-~~~dC~ 76 (126)
T smart00442 4 LRQLYC-RNGQHLQILPD--GTVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKC---GKLYGSKN-FTEDCV 76 (126)
T ss_pred EEEEEe-CCCeEEEEcCC--ceEecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCC---CCEEEccc-CCCCcE
Confidence 445542 34566655432 2555667776778889999999999999999 8999999974 34777665 667788
Q ss_pred EE
Q 009475 146 FQ 147 (534)
Q Consensus 146 F~ 147 (534)
|+
T Consensus 77 F~ 78 (126)
T smart00442 77 FR 78 (126)
T ss_pred EE
Confidence 85
No 220
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=35.81 E-value=4.6e+02 Score=28.00 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCC--CeEEEEEec-
Q 009475 265 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--PSLAAIELI- 341 (534)
Q Consensus 265 ~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~--~~vlg~eL~- 341 (534)
..++.+++.|+.|++.|-.+|+ +| +|. .+.+.+... .. ....+.+++.++.++++-++. .-.+++|.+
T Consensus 112 ~ai~~~kraId~A~eLGa~~v~-v~--~G~-~g~~~~~~~----d~-~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 112 YALRKVLRNMDLGAELGAETYV-VW--GGR-EGAEYDGAK----DV-RAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-Ec--cCC-CCCcCcccc----CH-HHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4688899999999999998653 33 221 010100000 00 245567888888888876654 345779987
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcCC-ce-EEEEe
Q 009475 342 NEPLAPGVALDTLKSYYKAGYDAVRKYTS-TA-YVIMS 377 (534)
Q Consensus 342 NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~-~Iiv~ 377 (534)
|||... .+..-..++...|++++. +. -+.+.
T Consensus 183 ~~~~~~-----~ll~T~~~al~li~~v~~pn~vgl~lD 215 (382)
T TIGR02631 183 NEPRGD-----ILLPTVGHALAFIETLERPELFGLNPE 215 (382)
T ss_pred CCCCcc-----eecCCHHHHHHHHHHcCCccceeEEEe
Confidence 677531 123334556666777764 42 34444
No 221
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=35.76 E-value=38 Score=34.57 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=43.7
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+.+|++...+.|++.|-|.++--.......-..-.+..++.+.++++.|+++|++|-+.+
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4689999999999999998765311100000011134589999999999999999998877
No 222
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.48 E-value=92 Score=34.39 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=39.4
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEEEEEc-CCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDL-HAAP 292 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~VIlDl-H~~p 292 (534)
+++.++.++++|++.|=|.+. ...+.. -..+. ....+...++++.++++||.+.+++ -+.|
T Consensus 286 d~ell~~l~~aG~~~v~iGiE--S~~~~~-L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTE--AAAQAT-LDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccc--cCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 577889999999987766442 221110 00111 1256778899999999999987774 3444
No 223
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=35.43 E-value=1e+02 Score=31.41 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~ 309 (534)
+.-+++.+++|+.-|=|--+|................-..|.+++++|++.|+.|+|=.|...+.
T Consensus 35 k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~--------------- 99 (273)
T PF10566_consen 35 KRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGG--------------- 99 (273)
T ss_dssp HHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTT---------------
T ss_pred HHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcch---------------
Confidence 56677889999999999877742111111011111223569999999999999999999975432
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCC--eEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 310 WGDSNVADTVAVIDFLAARYANRP--SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~--~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
...+.++. + +..-++|++-. .|- ++-++- +.....++|+++++.--+. +.+|-+++
T Consensus 100 -~~~~~~~~--~-~~~f~~~~~~Gv~GvK-idF~~~------d~Q~~v~~y~~i~~~AA~~--~LmvnfHg 157 (273)
T PF10566_consen 100 -NVANLEKQ--L-DEAFKLYAKWGVKGVK-IDFMDR------DDQEMVNWYEDILEDAAEY--KLMVNFHG 157 (273)
T ss_dssp -BHHHHHCC--H-HHHHHHHHHCTEEEEE-EE--SS------TSHHHHHHHHHHHHHHHHT--T-EEEETT
T ss_pred -hhHhHHHH--H-HHHHHHHHHcCCCEEe-eCcCCC------CCHHHHHHHHHHHHHHHHc--CcEEEecC
Confidence 11222211 1 45555565532 232 455553 2366778888777664432 34455554
No 224
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.88 E-value=43 Score=33.87 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=40.0
Q ss_pred CHHHHHHHHhCCccEEEeCcccccc-cCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~-~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
.+.+++.+++.|++.|||.++-... .....+ .-.+..++.+.++++.|+++|+.|.+.
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 4568899999999999996652110 000000 112347888999999999999999875
No 225
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.21 E-value=4.5e+02 Score=25.63 Aligned_cols=130 Identities=19% Similarity=0.171 Sum_probs=72.0
Q ss_pred HHHHH-HHHhCCccEEEe--CcccccccCCC---CCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCC
Q 009475 230 DEDFK-FLSSNGINAVRI--PVGWWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 303 (534)
Q Consensus 230 e~d~~-~ia~~G~N~VRI--Pv~~w~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~ 303 (534)
.++++ .+++.|+..+=+ |.+-|...+.. .+.+. +...+.++++++.|++.|..+|.- +. |... +
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~lg~~~i~~-~~--g~~~-----~- 110 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGRE-EEFREGVALAIAYARALGCPQVNC-LA--GKRP-----A- 110 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccH-HHHHHHHHHHHHHHHHhCCCEEEE-Cc--CCCC-----C-
Confidence 34444 456888875544 44333211100 01111 224688999999999999998763 32 1100 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCC-ceEEEEe
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMS 377 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Iiv~ 377 (534)
.... +...+.+++.++.+++.-++..-.+++|..|=+..+. .+-.-.+++.+.|+++++ +.-|.+.
T Consensus 111 ---~~~~-~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~----~~l~t~~~~~~li~~v~~~~~~i~~D 177 (254)
T TIGR03234 111 ---GVSP-EEARATLVENLRYAADALDRIGLTLLIEPINSFDMPG----FFLTTTEQALAVIDDVGRENLKLQYD 177 (254)
T ss_pred ---CCCH-HHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCC----ChhcCHHHHHHHHHHhCCCCEeEeee
Confidence 0000 2345677788888887777776678888766432111 122345566777777764 4445554
No 226
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=34.20 E-value=49 Score=34.30 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCccEEEeCccc---ccc-cCCCC----CCCCCC------chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVGW---WIA-NDPTP----PKPFVG------GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~---w~~-~~~~~----~~~~~~------~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
++.++.|+..++|++-+.+.- |.+ ....| ...+.. =..+.++++|+.|+++||.||..+
T Consensus 21 k~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 21 KRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp HHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 456778999999999987741 111 11111 000110 146889999999999999999876
No 227
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.09 E-value=1.7e+02 Score=31.10 Aligned_cols=133 Identities=14% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCC----CchHHHHHHHHHHHHHCCCE-EEEEcCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 301 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~----~~~l~~ld~~v~~a~~~Gl~-VIlDlH~~pG~qng~~~s 301 (534)
.++++.++.++++|++.|-+-+. .. ++.--..+. ...++..-+.++.|++.||. |-.++--
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~lE--T~-~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~----------- 225 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQE--TY-NPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALL----------- 225 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEe--cC-CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEe-----------
Confidence 36899999999999995554332 11 110000011 12566677789999999995 6333221
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCC-ChHHH-HHHHHHHHHHHHhcCCceEEEEeCC
Q 009475 302 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-ALDTL-KSYYKAGYDAVRKYTSTAYVIMSNR 379 (534)
Q Consensus 302 g~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~-~~~~~-~~~~~~~~~aIR~~~p~~~Iiv~~~ 379 (534)
|-..| ....-.+....+.|-.+|...+.-+-+..++ |..... +...+ ..-+-+.+.+.|-.-|+.-|.++++
T Consensus 226 ----Glge~-~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~-P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g 299 (371)
T PRK09240 226 ----GLSDW-RTDALMTALHLRYLQRKYWQAEYSISFPRLR-PCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTR 299 (371)
T ss_pred ----cCCcc-HHHHHHHHHHHHHHHHhCCCCceeeecCccc-cCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecC
Confidence 11112 1223345556677777888765433222222 221100 00001 2234567888899999998888764
No 228
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.03 E-value=93 Score=32.57 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=38.3
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+.+|++...+.|+..|||.++.- ..+...+.++++++.|+.|...+-.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 67899999999999999976321 1245789999999999999877654
No 229
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=32.88 E-value=79 Score=26.57 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=48.1
Q ss_pred hHHHHHHHHH---HHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEecc
Q 009475 266 SSKVLDNAFD---WAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 342 (534)
Q Consensus 266 ~l~~ld~~v~---~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N 342 (534)
+++.|.+.++ ..++.+++|++|.++-.+ ..++..|.+++.- .+ +++-.
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~-------------------------~~~~~~ll~~lg~--~~--~~~n~ 53 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGAG-------------------------SDILPRLLERLGC--DV--IELNC 53 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTSTT-------------------------HHHHHHHHHHTTC--EE--EEESS
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCHH-------------------------HHHHHHHHHHcCC--cE--EEEec
Confidence 4455555544 678899999999875321 2356677777655 22 34444
Q ss_pred CCCCC--C-CChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 343 EPLAP--G-VALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 343 EP~~~--~-~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
+|... . ..++-..+..+.+.+.+++.+.+..+++.
T Consensus 54 ~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~D 91 (104)
T PF02879_consen 54 DPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFD 91 (104)
T ss_dssp S-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-
T ss_pred ccccccccccccccccchhHHHHHHhhccCceEEEEEC
Confidence 45431 1 11111226778888899998887766664
No 230
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=32.53 E-value=68 Score=28.09 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCCC
Q 009475 270 LDNAFDWAEKYGVKVIVDLHAAPGSQN 296 (534)
Q Consensus 270 ld~~v~~a~~~Gl~VIlDlH~~pG~qn 296 (534)
++++++..+++|+.++||+-..|.|++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~ 28 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRK 28 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCC
Confidence 688999999999999999999998763
No 231
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=32.10 E-value=4.2e+02 Score=26.61 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCC---EEEEEcCCCCCCCCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV---KVIVDLHAAPGSQNGNEHSATRDG 306 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl---~VIlDlH~~pG~qng~~~sg~~~g 306 (534)
++.+..+++.|+-.|=++.+- ...| .. .+..++.+.+.++.|.++|+ .+|||.--.|-+.+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~----~g~P-~t-~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~---------- 169 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDD----TGIP-KD-AEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA---------- 169 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCC----CCCC-CC-HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC----------
Confidence 566777899999998876531 1111 11 13468889999999999999 89999654431100
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 307 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 307 ~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
....-.+++.++.+.+.|.+.|.++| +-|=-.
T Consensus 170 -----~~~~~~~l~~i~~l~~~~pg~p~l~G--~Sn~Sf 201 (261)
T PRK07535 170 -----QDAGPEVLETIRRIKELYPKVHTTCG--LSNISF 201 (261)
T ss_pred -----hHHHHHHHHHHHHHHHhCCCCCEEEE--eCCCcc
Confidence 12233567777888888877787766 445433
No 232
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=31.99 E-value=1.5e+02 Score=35.23 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHHCCCEEEEEcC-CCCCCC
Q 009475 264 GGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQ 295 (534)
Q Consensus 264 ~~~l~~ld~~v~~a~~~Gl~VIlDlH-~~pG~q 295 (534)
...++.|+.+|+.+++.||+||--+. .-|+..
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~ 836 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFPQSPGYK 836 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCCCCCcc
Confidence 35689999999999999999997654 445543
No 233
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=31.73 E-value=2.7e+02 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.473 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
++||+..++.|++..=|-++. + +++ ..+.|..+.+.|++.|.+++|.+=
T Consensus 20 ~~di~~A~~~GIDgFaLNig~-----~---d~~---~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS-----S---DSW---QPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc-----C---Ccc---cHHHHHHHHHHHHhcCCEEEEEec
Confidence 789999999999999887641 1 122 468899999999999999988653
No 234
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=31.60 E-value=3.8e+02 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 261 PFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 261 ~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
.+++..+...+++|+.+++.|++|++.+|.
T Consensus 59 ~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 59 DWDAGKFPNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred ecChhhCCCHHHHHHHHHHCCCEEEEEeCh
Confidence 344556667899999999999999998874
No 235
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.20 E-value=73 Score=33.53 Aligned_cols=57 Identities=7% Similarity=0.124 Sum_probs=42.8
Q ss_pred HHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCC
Q 009475 232 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 292 (534)
Q Consensus 232 d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~p 292 (534)
..++++++|.++|-+-+.|- ++.+.......++.|.++.+.|+++||-+++-+-.+|
T Consensus 111 sve~a~~~GAdAVk~lv~~~----~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~ 167 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR----PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYD 167 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC----CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 46789999999999977552 3211112335788999999999999999999864554
No 236
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=31.18 E-value=4.5e+02 Score=24.72 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=67.6
Q ss_pred HHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE-cCCCCCCCCCCCCCCCCCCCCCC
Q 009475 232 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD-LHAAPGSQNGNEHSATRDGFQEW 310 (534)
Q Consensus 232 d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD-lH~~pG~qng~~~sg~~~g~~~W 310 (534)
|+..+|+.|++.|=|-.+. ...+.-+. =..+..-++.|++.||.+ . .|-.... ..
T Consensus 14 d~~~~k~~g~~fviiKate-----G~~g~~~~---D~~~~~~~~~A~~aGl~~--G~YHf~~~~-----------~~--- 69 (191)
T cd06414 14 DWKKVKASGVDFAIIRAGY-----GGYGELQE---DKYFEENIKGAKAAGIPV--GVYFYSYAV-----------TV--- 69 (191)
T ss_pred CHHHHHhCCCCEEEEEEec-----CCCccccc---CHHHHHHHHHHHHCCCce--EEEEEEEeC-----------CH---
Confidence 7899999998877664432 11100021 134677888899999865 3 3321100 00
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 311 GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 311 ~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
....+++..+++.+...=.+.|-++-+|--+... ...+...+.++.++++++|++.+- .++|..
T Consensus 70 -~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~-~~~~~~~~~~~~~~f~~~v~~~G~-~~~iY~ 133 (191)
T cd06414 70 -AEAREEAEFVLRLIKGYKLSYPVYYDLEDETQLG-AGLSKDQRTDIANAFCETIEAAGY-YPGIYA 133 (191)
T ss_pred -HHHHHHHHHHHHHhhccCCCCCeEEEeecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCC-CeEEEe
Confidence 1334566667766654322334444455422111 124567899999999999998755 455554
No 237
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=31.04 E-value=1.5e+02 Score=29.90 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=49.7
Q ss_pred hhhhhccCCCCCHHHHHHHHhCCccEEEeCcccccc-cCCC-----C------CCCCCCchHHHHHHHHHHHHHCCCEEE
Q 009475 218 QVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIA-NDPT-----P------PKPFVGGSSKVLDNAFDWAEKYGVKVI 285 (534)
Q Consensus 218 ~~~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~-~~~~-----~------~~~~~~~~l~~ld~~v~~a~~~Gl~VI 285 (534)
..+.+.|..|+..+....+..-|+=++++.=+...+ .+.. . ......++++.|++.++.+++.+.+|+
T Consensus 138 ~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~ 217 (296)
T cd00842 138 DALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKVW 217 (296)
T ss_pred HHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 445667877887777777777776555532111111 1110 0 001123689999999999999999999
Q ss_pred EEcCCCCCC
Q 009475 286 VDLHAAPGS 294 (534)
Q Consensus 286 lDlH~~pG~ 294 (534)
|=.|..|+.
T Consensus 218 I~~HiPp~~ 226 (296)
T cd00842 218 IIGHIPPGV 226 (296)
T ss_pred EEeccCCCC
Confidence 999998864
No 238
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=30.78 E-value=82 Score=33.84 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=38.9
Q ss_pred hccCCCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.|+..-+.+.-++..++.|++++|| +...+ ...-++..++.++++|..|...+
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi----FDAlN----------D~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI----FDALN----------DVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe----chhcc----------chhHHHHHHHHHHhcCceeEEEE
Confidence 4666667777788889999999999 22222 12348899999999999876554
No 239
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=30.57 E-value=6.1e+02 Score=29.89 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHhCC------ccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCC-----
Q 009475 226 SYITDEDFKFLSSNG------INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS----- 294 (534)
Q Consensus 226 ~~ite~d~~~ia~~G------~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~----- 294 (534)
++-+|+++..+.+.. +.++++-+.+| .+.-....+++..+...+.+++..++.||++|+-++-.-..
T Consensus 275 ~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~--~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~ 352 (772)
T COG1501 275 TYYDEDEVLEFIDEMRERDIPLDVFVLDIDFW--MDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLF 352 (772)
T ss_pred ccccHHHHHHHHhhcccccCcceEEEEeehhh--hccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchH
Confidence 345577766654332 56666665422 22212234555666677899999999999999877633111
Q ss_pred ----CCCC---CCCCCCCCCCCCC------hhhHHHHHHHHH-HHHHHhcCCCeEEEEEeccCCCCCCC-------ChHH
Q 009475 295 ----QNGN---EHSATRDGFQEWG------DSNVADTVAVID-FLAARYANRPSLAAIELINEPLAPGV-------ALDT 353 (534)
Q Consensus 295 ----qng~---~~sg~~~g~~~W~------~~~~~~~~~~w~-~lA~ryk~~~~vlg~eL~NEP~~~~~-------~~~~ 353 (534)
.+|. +..|...-...|. +.....+.+.|. ...+.+.+.....-+-=+|||..... +...
T Consensus 353 ~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~ 432 (772)
T COG1501 353 KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEE 432 (772)
T ss_pred HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHH
Confidence 0111 0111111112343 344567778887 56566777654444566899986421 2222
Q ss_pred H-----HHHHHHHHHHHHhcCC-ceEEEEe
Q 009475 354 L-----KSYYKAGYDAVRKYTS-TAYVIMS 377 (534)
Q Consensus 354 ~-----~~~~~~~~~aIR~~~p-~~~Iiv~ 377 (534)
. .-+++..+++.|+..+ .++++++
T Consensus 433 ~~N~yp~~~~~a~~~~~~~~~~~~r~~~ls 462 (772)
T COG1501 433 MHNLYPLLYAKAVYEALKELGGNERPFILS 462 (772)
T ss_pred HhcchhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 2 2456778999999954 4666665
No 240
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=30.18 E-value=1.1e+02 Score=35.06 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=65.7
Q ss_pred ccCCCCCHHHHHHHHhCCccEEEeCccc-ccccCCCCCCC---CCCchHHHHHHHHHH--HHHCCCEEEEEcCCCCCC--
Q 009475 223 HWDSYITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKP---FVGGSSKVLDNAFDW--AEKYGVKVIVDLHAAPGS-- 294 (534)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~-w~~~~~~~~~~---~~~~~l~~ld~~v~~--a~~~Gl~VIlDlH~~pG~-- 294 (534)
-| +|-.|+|+..+ +.||+-.-||... |.-.+-..+.. +++..+..=..+++. ++.+.|-+|||-|--..+
T Consensus 365 RW-NY~DE~DV~~V-d~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y 442 (915)
T KOG1066|consen 365 RW-NYNDEEDVLTV-DQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGY 442 (915)
T ss_pred cc-cccchhhhhhh-hcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCe
Confidence 45 46677787665 5789999999873 54332222222 233222223334433 345678999999954321
Q ss_pred -------CCC---CCCCCCC------CCCCCCChhhHHHHHHHHHHHHH--HhcCC-CeEEEEEeccCCCC
Q 009475 295 -------QNG---NEHSATR------DGFQEWGDSNVADTVAVIDFLAA--RYANR-PSLAAIELINEPLA 346 (534)
Q Consensus 295 -------qng---~~~sg~~------~g~~~W~~~~~~~~~~~w~~lA~--ryk~~-~~vlg~eL~NEP~~ 346 (534)
+.| .+++|.. .|...|.+.-.....+.|...-+ +|.+. +++..|.=||||.-
T Consensus 443 ~v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fafd~y~g~t~nl~iWNDMNEPSV 513 (915)
T KOG1066|consen 443 FVHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFAFDRYEGSTPNLFIWNDMNEPSV 513 (915)
T ss_pred EEhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcccccccCCCCceEEeccCCCccc
Confidence 011 1222221 12222222223456677776544 45443 56888999999974
No 241
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.11 E-value=3.5e+02 Score=26.89 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccC
Q 009475 264 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 343 (534)
Q Consensus 264 ~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NE 343 (534)
...++.+.++++.|++.|...++ +|.. ... + .. .+...+.+++.++.|++.-+...-.+++|...-
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~-~~~g--~~~---------~-~~-~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLV-FHPG--SYL---------G-QS-KEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-ECCC--CCC---------C-CC-HHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 34788999999999999999765 4532 110 0 00 034567788999999998777776677774432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcC--CceEEEEe
Q 009475 344 PLAPGVALDTLKSYYKAGYDAVRKYT--STAYVIMS 377 (534)
Q Consensus 344 P~~~~~~~~~~~~~~~~~~~aIR~~~--p~~~Iiv~ 377 (534)
|.. .+-.-..++.+.|++++ |+.-+.+.
T Consensus 147 ~~~------~~~~t~~~~~~li~~v~~~~~~g~~lD 176 (279)
T cd00019 147 QGN------EIGSSFEELKEIIDLIKEKPRVGVCID 176 (279)
T ss_pred CCC------CCCCCHHHHHHHHHhcCCCCCeEEEEE
Confidence 210 01112233445555555 45555554
No 242
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=30.08 E-value=96 Score=30.00 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHH-hcCCCeEEEEEecc-CCCCCCCChHHHHHH-HH
Q 009475 283 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAAR-YANRPSLAAIELIN-EPLAPGVALDTLKSY-YK 359 (534)
Q Consensus 283 ~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~r-yk~~~~vlg~eL~N-EP~~~~~~~~~~~~~-~~ 359 (534)
.+|||+-.+||+ |.++|.. -..+..|+|+||++ ||-. +++.=.-... -.
T Consensus 71 ~~VlD~G~APGs---------------------------WsQVavqr~~p~g~v~gVDllh~~p~~-Ga~~i~~~dvtdp 122 (232)
T KOG4589|consen 71 DTVLDCGAAPGS---------------------------WSQVAVQRVNPNGMVLGVDLLHIEPPE-GATIIQGNDVTDP 122 (232)
T ss_pred CEEEEccCCCCh---------------------------HHHHHHHhhCCCceEEEEeeeeccCCC-CcccccccccCCH
Confidence 367899988874 4566543 33567899999998 4443 2110000000 12
Q ss_pred HHHHHHHhcCCceE
Q 009475 360 AGYDAVRKYTSTAY 373 (534)
Q Consensus 360 ~~~~aIR~~~p~~~ 373 (534)
+.+..||+..|++.
T Consensus 123 ~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 123 ETYRKIFEALPNRP 136 (232)
T ss_pred HHHHHHHHhCCCCc
Confidence 34556666667644
No 243
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=30.05 E-value=2.2e+02 Score=29.83 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=55.2
Q ss_pred CHHHHHH----HHhCC--ccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCC
Q 009475 229 TDEDFKF----LSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (534)
Q Consensus 229 te~d~~~----ia~~G--~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg 302 (534)
+++++.. +++.+ +++|=|-+.|+. ....-.+++..+...+++++..++.|+++++.+|-.-. .+....
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~---~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~--~g~~~~- 95 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQD---NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS--YGGGLG- 95 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhc---CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--cCccCC-
Confidence 4444443 44444 444544444432 11112344455566788999999999999998874322 111111
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 303 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
+...|.+.....+.+.|..+.+.+-+...-.-+-=+|||.
T Consensus 96 ---~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 96 ---SPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred ---CCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcc
Confidence 1111222233455567777666554322111233489986
No 244
>PRK00865 glutamate racemase; Provisional
Probab=30.05 E-value=2.2e+02 Score=28.52 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 319 VAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 319 ~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
+.+++.|.+++.+..-+..-|..|=|.+ ..+.+.+.++..++++.+.+.+.+.+||-.+
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYG-EKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4688999999999999999999999997 4678999999999999999988888777664
No 245
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=30.04 E-value=6.5e+02 Score=26.15 Aligned_cols=58 Identities=7% Similarity=-0.073 Sum_probs=35.4
Q ss_pred HHHHHHHhCCc--cEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 231 EDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 231 ~d~~~ia~~G~--N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
+.++.+++.|+ ++|=|-+.|+. ....-.+++..+...+++|+..++.|++|++.+|..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~ 87 (339)
T cd06603 28 EVDAGFDEHDIPYDVIWLDIEHTD---GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPH 87 (339)
T ss_pred HHHHHHHHcCCCceEEEEChHHhC---CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 44555666663 34433333331 111123445556667899999999999999999844
No 246
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.17 E-value=1.6e+02 Score=30.95 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=43.7
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
.|.+-.+.|.++|++.||+-++.=.......-.-.--.++..+.++-+.|+++|..||-|
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEec
Confidence 578899999999999999988753332211100011138899999999999999999887
No 247
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=29.03 E-value=4.3e+02 Score=24.15 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=47.3
Q ss_pred ceEEEEEec--CceEEEEeeC--CcEEEeecCCCCceEEEeecCCC--CCceEEEEEeCCCCceEEEEecC--CceEEec
Q 009475 100 ETFRLWRVN--ETFYNFRVNN--KQFIGLENQGQGNGLVAVSNTAG--YSETFQIVRKDGDSSRVRLSASN--GMFIQAI 171 (534)
Q Consensus 100 etf~~~~~~--~~~~~~~~~n--~~~v~~~~~g~~~~~~a~~~~~~--~~EtF~ivr~~~~~~~v~i~~~n--G~~Lq~~ 171 (534)
.||+|..-= .+.|.|.+.| |.|+...|. .-.|.++..+.. .--||..++.-.++..+.+...| |.||+..
T Consensus 39 a~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~--~v~l~~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 39 ATFRVVPGLADSSCVSFESVNYPGYYLRHSNF--RVRLEKNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp G-EEEEE-SS-TTCEEEEESSSTTEEEEEETT--EEEEEE--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred ceEEEEEccCCCCEEEEEECCCCCcEEEEECC--EEEEeecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 489987532 5689999987 999999763 333333322211 33478877763334556777766 9999988
Q ss_pred ccceeecC
Q 009475 172 SETRLTAD 179 (534)
Q Consensus 172 g~~~v~ad 179 (534)
+..+..+.
T Consensus 117 ~~~l~l~~ 124 (142)
T PF05270_consen 117 NGELYLAP 124 (142)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEec
Confidence 77665543
No 248
>PRK09389 (R)-citramalate synthase; Provisional
Probab=28.86 E-value=57 Score=36.06 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++|++...+.|++.|+|.++-+...-...-..-.+..++.+.++++.|+++|+.|.+++-.
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 7899999999999999987643221000000112357888889999999999999987653
No 249
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=28.86 E-value=3.4e+02 Score=26.85 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEecc
Q 009475 264 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 342 (534)
Q Consensus 264 ~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N 342 (534)
+..++++.++++.|++.|..+|+ +|. |.. . . .. .....+++++.++.|++. ...-.+++|-++
T Consensus 80 ~~~~~~l~~~i~~A~~lGa~~vv-~h~--g~~------~-~-~~---~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~~ 142 (273)
T smart00518 80 EKSIERLIDEIKRCEELGIKALV-FHP--GSY------L-K-QS---KEEALNRIIESLNEVIDE--TKGVVILLETTA 142 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-Ecc--ccc------c-C-CC---HHHHHHHHHHHHHHHHhc--cCCcEEEEeccC
Confidence 35788999999999999998765 563 210 0 0 00 034567788888888883 444456677553
No 250
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.45 E-value=1.4e+02 Score=29.77 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=37.4
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
..+|++..++.|++.|||.+.-- ....+.++++.|++.|+.|.+.+-
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46899999999999999955320 124578899999999999988763
No 251
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.33 E-value=2e+02 Score=28.96 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
+..+.+++.|++.+|=-. | ...+.+..|.+-.++-|+.+.+.|++.||.++-+.|..
T Consensus 33 ~~a~~~~~~g~~~~r~g~--~--kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGA--Y--KPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred HHHHHHHHcCCCEEEecc--c--CCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 445568899999999633 2 12233344544467889999999999999999999975
No 252
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=28.27 E-value=83 Score=33.20 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC--CCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~--~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.+|++.++.+++.|++.|+|.+.-. ++...+.. ..+.++.+-+.++.++++|+.|.|..
T Consensus 101 ll~~~~~~~L~~~g~~~v~iSldg~---~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 101 GLTEARLAALKDAGLDHIQLSFQDS---DPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred cCCHHHHHHHHHcCCCEEEEEecCC---CHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 3688999999999999999987521 11000011 12468888888999999999987754
No 253
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=28.19 E-value=3.4e+02 Score=22.26 Aligned_cols=73 Identities=7% Similarity=0.127 Sum_probs=35.3
Q ss_pred ceeEEEeecC-CCceE-EeccCCCCCcceEEEEEecCceEEEEeeCCcEEEeecCCCCceEEEeecCC-CCCceEEEEE
Q 009475 75 FQKYIAAESG-GGTIV-VANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTA-GYSETFQIVR 150 (534)
Q Consensus 75 ~~~~~~a~~~-g~~~~-~anr~~~~~wetf~~~~~~~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~-~~~EtF~ivr 150 (534)
.|+.|.+..+ .++.| +..-...+.-..|.+.+ ++.+.++. .+.-+.+.....+..|+...-.. .....|++..
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~--~g~~~~~~-~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~ 84 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS--DGTIRIKS-SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNK 84 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC--CCeEEEcC-CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECC
Confidence 5677766554 23333 33332222334444443 66777765 55555544321123454444444 5566776654
No 254
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=28.17 E-value=1.1e+02 Score=31.89 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 294 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~ 294 (534)
++.++++.+-.-.-.+| |+++++ |....++++.+.|+++||+||-|.-++.|+
T Consensus 101 id~~~~~~~i~~~t~ai-~~~h~~-------------G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 101 IDPEALEKAITPKTKAI-LVVHLF-------------GNPADMDAIRAIARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp B-HHHHHHHHHTTEEEE-EEE-GG-------------GB---HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred cCHHHHHHHhccCccEE-EEecCC-------------CCcccHHHHHHHHHHcCCcEEEccccccCc
Confidence 34555555544444444 455543 223358999999999999999998777664
No 255
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=27.99 E-value=1.6e+02 Score=29.49 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
+-.++...+.|.+.|=|-... . ..+.+.++++.|+++|+-+++|+|..
T Consensus 123 ~~qi~~a~~~GAD~VlLi~~~-----------l---~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 123 PYQIYEARAAGADAILLIVAA-----------L---DDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHHHcCCCEEEEEecc-----------C---CHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 445666777888887773321 0 12579999999999999999999964
No 256
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=27.81 E-value=1.7e+02 Score=24.76 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHhC-CccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 009475 227 YITDEDFKFLSSN-GINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 286 (534)
Q Consensus 227 ~ite~d~~~ia~~-G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIl 286 (534)
..+..|++++-+. .++.|++-+.. -+.+....++.+.|+++|+.+.+
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 3567788887655 47888884432 14678899999999999999866
No 257
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.61 E-value=1.9e+02 Score=29.28 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCC-CCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPT-PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~-~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
.+..+.+|++|+..+|.-. .+|. .+..|.+-..+-++.+-+.|++.||.++-+.|..
T Consensus 44 ~~~A~~lk~~g~~~~r~~~-----~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGA-----FKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHcCCCEEEEee-----ecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 4667889999999999843 2232 2233433246667777788899999999999975
No 258
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.38 E-value=79 Score=33.04 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC--CCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~--~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
-++++.++.|++.|++.|.|.+.-- ++...... ..+.++.+-+.++.++++|+.|.|..
T Consensus 92 ll~~e~~~~L~~~g~~~v~iSldg~---~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 92 GLTEARLDALADAGLDHVQLSFQGV---DEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred cCCHHHHHHHHhCCCCEEEEeCcCC---CHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEE
Confidence 3678999999999999999987521 11000011 12467888888899999999887655
No 259
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.07 E-value=1.6e+02 Score=32.61 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
--|.+..+.+.++|++.||+-++-=.......-.......+..+.++.+.|+++|+.||-|
T Consensus 276 v~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 276 VVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred cCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 3578889999999999999988742222111100111137889999999999999999987
No 260
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=26.80 E-value=1.2e+02 Score=29.82 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=38.9
Q ss_pred cccccceeEEeeeeceeEEEeecCCCceEEeccCCCCCcceEEEEEecCceEEEEeeCCcEEEeec
Q 009475 61 DLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLEN 126 (534)
Q Consensus 61 ~~~~g~~~~~~s~~~~~~~~a~~~g~~~~~anr~~~~~wetf~~~~~~~~~~~~~~~n~~~v~~~~ 126 (534)
-+|||+.|.+|+- |-.|| +.+.+ ..||.=+|. +.++.+.|.+.+|+||+.+-
T Consensus 106 ~lL~~~~v~v~hp-------Ai~GG----vV~~d--~~Wekg~l~-v~~~~i~~~~~~~~~~~I~l 157 (221)
T PF04283_consen 106 ALLNGKEVLVKHP-------AIVGG----VVQQD--AEWEKGKLK-VTKKGIWFASSSGQFVSIDL 157 (221)
T ss_pred HhhCCeEEEEECC-------ceecc----eeccC--CccccceEE-EeccceEEEecCCceeEEEe
Confidence 3688999999875 77777 44443 369998874 44677889888999999873
No 261
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=26.75 E-value=1.9e+02 Score=31.56 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 226 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 226 ~~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
+-.|.++.+.+.++|++.|++-++-=.......-.......+..+.++.+.|+++++.||.|
T Consensus 272 ~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 272 NVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred eCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 44689999999999999999976421111000000111136788888999999999999886
No 262
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=26.68 E-value=2.2e+02 Score=28.54 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=39.8
Q ss_pred ccceeeccccC-CcCCcCC-----------CCCcccccceeEE-eeeeceeEEEeecCC--CceEEeccCCCCCcceEEE
Q 009475 40 GNWLVTEGWMK-PSRFDDI-----------PNKDLLDGTQVQF-MSTKFQKYIAAESGG--GTIVVANRTSASGWETFRL 104 (534)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~-----------~~~~~~~g~~~~~-~s~~~~~~~~a~~~g--~~~~~anr~~~~~wetf~~ 104 (534)
..=||+|++|+ +.--..+ ...+.+.|.+|.+ -.-....|+..+... |.-...+ +|
T Consensus 25 ~~~lVV~~~i~~~~~~~~V~Ls~s~~~~~~~~~~~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~--------~~-- 94 (298)
T PF14054_consen 25 EPKLVVEGYITNPGDPQTVRLSRSVPYFDNSPPEPVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSN--------SF-- 94 (298)
T ss_pred CCeEEEEEEEecCCCcEEEEEEEeecccCCCCCcccCCcEEEEEeCCCcceEeecccCCCcceEEecc--------cc--
Confidence 36689999998 4433311 1222278888888 444444555555543 2222111 11
Q ss_pred EEecCceEEEEee--CCcEEEee
Q 009475 105 WRVNETFYNFRVN--NKQFIGLE 125 (534)
Q Consensus 105 ~~~~~~~~~~~~~--n~~~v~~~ 125 (534)
...-+.++.|++. +|+-++|+
T Consensus 95 ~~~~G~~Y~L~V~~~~~~~~sa~ 117 (298)
T PF14054_consen 95 RGRPGRTYRLEVETPGGKTYSAE 117 (298)
T ss_pred cccCCCEEEEEEEECCCCEEEEE
Confidence 1223677888874 44444443
No 263
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.50 E-value=7.3e+02 Score=25.64 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 262 FVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 262 ~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
+.+..++.++++++.++++|-++++=|++.
T Consensus 71 ~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 71 WNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred cCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 445689999999999999999999999874
No 264
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=26.47 E-value=7.5e+02 Score=25.75 Aligned_cols=141 Identities=15% Similarity=0.063 Sum_probs=69.1
Q ss_pred HHHHHHHhCCc--cEEEeCcccccccCCCCCCCCCCchHHHH--HHHHHHHHHCCCEEEEEcCCCCCCC-----------
Q 009475 231 EDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVL--DNAFDWAEKYGVKVIVDLHAAPGSQ----------- 295 (534)
Q Consensus 231 ~d~~~ia~~G~--N~VRIPv~~w~~~~~~~~~~~~~~~l~~l--d~~v~~a~~~Gl~VIlDlH~~pG~q----------- 295 (534)
+.++.+++.|+ ++|=|-+.|+. ....-.+++..+... +++|+..++.|++|++-+|..-.-.
T Consensus 28 ~~~~~~r~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 28 EVVENMRAAGIPLDVQWNDIDYMD---RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHhCCCcceEEECccccc---CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 34455666663 34444344431 111123444455556 8999999999999999887442211
Q ss_pred ---CCC---CCCCCC------CCCCCCChhhHHHHHHHHHHHHHHhcC---CCeEEEEEeccCCCCCCCChHHH--HHHH
Q 009475 296 ---NGN---EHSATR------DGFQEWGDSNVADTVAVIDFLAARYAN---RPSLAAIELINEPLAPGVALDTL--KSYY 358 (534)
Q Consensus 296 ---ng~---~~sg~~------~g~~~W~~~~~~~~~~~w~~lA~ryk~---~~~vlg~eL~NEP~~~~~~~~~~--~~~~ 358 (534)
.+. +.+|.. .|...+.+-....+.+.|....+++-+ ...+ +-=+|||... .....+ ..+.
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~--w~D~~Ep~~~-~~~hN~y~~~~~ 181 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGL--WIDMNEPSNF-YDVHNLYGLSEA 181 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEE--EecCCCCchH-hhhcchhhHHHH
Confidence 000 011110 011111123334566677665555332 2333 3347999631 011111 1234
Q ss_pred HHHHHHHHhcCCceEEEEe
Q 009475 359 KAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 359 ~~~~~aIR~~~p~~~Iiv~ 377 (534)
+..++++++...+++++++
T Consensus 182 ~~~~~~~~~~~~~r~~~~s 200 (339)
T cd06602 182 IATYKALQSIPGKRPFVIS 200 (339)
T ss_pred HHHHHHHHhcCCCCCEEEE
Confidence 5567788877555666664
No 265
>PRK10673 acyl-CoA esterase; Provisional
Probab=26.24 E-value=1.6e+02 Score=28.15 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCeEEEEEecc----CCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Q 009475 321 VIDFLAARYANRPSLAAIELIN----EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 382 (534)
Q Consensus 321 ~w~~lA~ryk~~~~vlg~eL~N----EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~ 382 (534)
.|..++.++.+.-.|+.+|+-. ++. ..-.+..+.+++...|...+.+.+++++-++++
T Consensus 31 ~~~~~~~~l~~~~~vi~~D~~G~G~s~~~----~~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg 92 (255)
T PRK10673 31 NLGVLARDLVNDHDIIQVDMRNHGLSPRD----PVMNYPAMAQDLLDTLDALQIEKATFIGHSMGG 92 (255)
T ss_pred HHHHHHHHHhhCCeEEEECCCCCCCCCCC----CCCCHHHHHHHHHHHHHHcCCCceEEEEECHHH
Confidence 3555555565555788898843 211 112456677777777877777777788765554
No 266
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=26.16 E-value=5.3e+02 Score=23.86 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=64.5
Q ss_pred HHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCC
Q 009475 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 310 (534)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W 310 (534)
-|++.+++.|+..|=|-.+. .. .+.. ..++.-++.|++.||.|= -.|-.... + .
T Consensus 10 ~dw~~~k~~gi~fviikate-----G~---~~~D---~~~~~n~~~a~~aGl~~G-~Yhf~~~~-~----------~--- 63 (181)
T PF01183_consen 10 IDWQKVKAAGIDFVIIKATE-----GT---SYVD---PYFESNIKNAKAAGLPVG-AYHFARAT-N----------S--- 63 (181)
T ss_dssp -SHHHHHHTTEEEEEEEEEE-----TT---TEE----TTHHHHHHHHHHTTSEEE-EEEE--TT-T----------H---
T ss_pred cCHHHHHHCCCCEEEEEeee-----CC---Ceec---chHHHHHHHHHHcCCeEE-EEEEeccC-C----------c---
Confidence 35899999997765443321 10 1111 126777888999999972 22322110 0 0
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEe
Q 009475 311 GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (534)
Q Consensus 311 ~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~ 377 (534)
....+++..+++.+. ......-.+.+|+=.. .....+...+.++.+++++.|++.....++|..
T Consensus 64 -~~a~~qA~~f~~~~~-~~~~~~~~~~lD~E~~-~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~iY~ 127 (181)
T PF01183_consen 64 -SDAEAQADYFLNQVK-GGDPGDLPPALDVEDD-KSNNPSKSDNTAWVKAFLDEVEKAAGYKPGIYT 127 (181)
T ss_dssp -CHHHHHHHHHHHCTH-TSSTSCS-EEEEE-S--GGCCSSHHHHHHHHHHHHHHHHHHCTSEEEEEE
T ss_pred -ccHHHHHHHHHHHhc-ccCCCcceEEEecccc-ccCCCCHHHHHHHHHHHHHHHHHHhCCceeEee
Confidence 134556666666664 2222222234555422 222346788999999999999775555555554
No 267
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=26.00 E-value=6.3e+02 Score=26.00 Aligned_cols=30 Identities=3% Similarity=0.009 Sum_probs=23.8
Q ss_pred CCCchHHHHHHHHHHHHHCCCEEEEEcCCC
Q 009475 262 FVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (534)
Q Consensus 262 ~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~ 291 (534)
+++..+...+++|+.++++|++|++.+|-.
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 445556668899999999999999987743
No 268
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=25.92 E-value=2.4e+02 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=19.5
Q ss_pred HHHHHHHHHHH-HHCCCEEEEEcCCCCC
Q 009475 267 SKVLDNAFDWA-EKYGVKVIVDLHAAPG 293 (534)
Q Consensus 267 l~~ld~~v~~a-~~~Gl~VIlDlH~~pG 293 (534)
-+.|.+.++.. .++|.-++||+|.+|.
T Consensus 124 H~al~~~L~~~~~~~g~~~liD~HSm~s 151 (263)
T TIGR02017 124 HAALQAEIERLRAQHGYAVLYDAHSIRS 151 (263)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccCCc
Confidence 34455556554 5789999999998875
No 269
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.35 E-value=1.1e+02 Score=29.88 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=38.7
Q ss_pred CHHHHHH----HHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 229 TDEDFKF----LSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 229 te~d~~~----ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
.+++++. +++.|++.||+.++-....-...-..-.+..++.+.+++++|+++|+.|-+.+-
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 4556555 456999999997753210000000011134688899999999999999966653
No 270
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=25.31 E-value=2.4e+02 Score=28.03 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=66.3
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHH----HHHCCCEEEEEcCCCCCCCCCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDW----AEKYGVKVIVDLHAAPGSQNGNEHSATR 304 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~----a~~~Gl~VIlDlH~~pG~qng~~~sg~~ 304 (534)
+.+|++.|+..|+..|=-+- .+|.+. ...+.+++.+++++.+ |.+.||++-+-+---|..
T Consensus 13 ~~eDlekMa~sGI~~Vit~A-----hdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~---------- 76 (254)
T COG1099 13 GFEDLEKMALSGIREVITLA-----HDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRA---------- 76 (254)
T ss_pred cHHHHHHHHHhChhhhhhcc-----cCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCC----------
Confidence 46899999999998874332 233221 2334578888888764 889998765544322321
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
.| . ..-..++.|-+-++ +..|+|+. |-.....+.+. .++.+.-..--|+. +.+||++.
T Consensus 77 --iP----~---e~~~~l~~L~~~l~-~e~VvAiG---EiGLe~~t~~E-~evf~~QL~LA~e~--dvPviVHT 134 (254)
T COG1099 77 --IP----P---ELEEVLEELEELLS-NEDVVAIG---EIGLEEATDEE-KEVFREQLELAREL--DVPVIVHT 134 (254)
T ss_pred --CC----c---hHHHHHHHHHhhcc-cCCeeEee---ecccccCCHHH-HHHHHHHHHHHHHc--CCcEEEeC
Confidence 11 1 24456666766677 44565543 33322233333 34444444444554 45777775
No 271
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=25.20 E-value=5.2e+02 Score=29.18 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=71.7
Q ss_pred hhhhhccCCCCCHHHHHHHHhCCccEEEeC---------c------ccccccCCCCCCCCCCchHHHHHHHHHHHHHCCC
Q 009475 218 QVLQDHWDSYITDEDFKFLSSNGINAVRIP---------V------GWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV 282 (534)
Q Consensus 218 ~~~~~hw~~~ite~d~~~ia~~G~N~VRIP---------v------~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl 282 (534)
+.+..-|++|+-.+..+.+..-|+=.+-+. . ++|...... .|. ..++.|...++.|++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~t--dp~--~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQT--DPI--DQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCC--Cch--HHhhHHHHHHHHHHhcCC
Confidence 556778999999888888777665444332 1 123322222 122 359999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEE
Q 009475 283 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIE 339 (534)
Q Consensus 283 ~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~e 339 (534)
+|-|=.|-.||... -...|.........++-+.++.+|=+|+++--|.
T Consensus 360 kVhil~HIPpG~~~---------c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 360 KVHILGHIPPGDGV---------CLEGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred EEEEEEeeCCCCcc---------hhhhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 99999999887411 0123443444455567778888888877654443
No 272
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=25.13 E-value=52 Score=28.63 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=25.0
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEE
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV 284 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~V 284 (534)
++++||+.|++.||.+|== . .|+...+ ..-..+..-+.|+++||.-
T Consensus 15 ~~~~d~~~la~~GfktVIn-l------Rpd~E~~----~qp~~~~~~~~a~~~Gl~y 60 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVIN-L------RPDGEEP----GQPSSAEEAAAAEALGLQY 60 (110)
T ss_dssp --HHHHHHHHHCT--EEEE--------S-TTSTT----T-T-HHCHHHHHHHCT-EE
T ss_pred CCHHHHHHHHHCCCcEEEE-C------CCCCCCC----CCCCHHHHHHHHHHcCCeE
Confidence 7899999999999999832 1 1111111 1112455667899999875
No 273
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=25.12 E-value=4.5e+02 Score=27.28 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCcc-EEEeCcccccccCCCCCCCCCCchHHHHHH--------HHHHHHHCCCE-EEEEcCCCCCCCCCCC
Q 009475 230 DEDFKFLSSNGIN-AVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGVK-VIVDLHAAPGSQNGNE 299 (534)
Q Consensus 230 e~d~~~ia~~G~N-~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~--------~v~~a~~~Gl~-VIlDlH~~pG~qng~~ 299 (534)
++.|..+++.|+. .|=|+++ +. .|-.++.++.+.+ +++.|.++||. +++|.-..|-+
T Consensus 136 ~eel~llk~yg~aavIvLa~d------~~--~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs----- 202 (308)
T PRK00979 136 EEEIEALKESDIKAAIVLAFD------PM--DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLP----- 202 (308)
T ss_pred HHHHHHHHHhCCceEEEEEcC------CC--CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCc-----
Confidence 4568999999977 6767654 21 2334568999999 89999999995 55555444321
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Q 009475 300 HSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (534)
Q Consensus 300 ~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~ 345 (534)
....+++..+.+.++| +.|...| +-|=+.
T Consensus 203 --------------~~~~tl~aI~~iK~~~-G~pt~~G--lSNiS~ 231 (308)
T PRK00979 203 --------------GSGAAIRAIFAVKAKF-GYPVGCA--PHNAPS 231 (308)
T ss_pred --------------cHHHHHHHHHHHHHHc-CCCeEEE--EeCCch
Confidence 1347888889999999 7888777 567654
No 274
>PRK15492 triosephosphate isomerase; Provisional
Probab=25.06 E-value=6.9e+02 Score=25.17 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
|=-...|++.|++.|=|- +.+.. .+-.+.-+.+.+-+..|.++||.+|+-+-
T Consensus 84 evSa~mLkd~G~~~viiG-----HSERR---~~f~Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 84 DISPLMLKEIGTQLVMIG-----HSERR---HKFGETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred cCCHHHHHHcCCCEEEEC-----ccccc---cccCcchHHHHHHHHHHHHCCCEEEEEcC
Confidence 334667899999999772 22221 12233455677788999999999999865
No 275
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.34 E-value=6.8e+02 Score=24.53 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=76.6
Q ss_pred CHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009475 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 308 (534)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~ 308 (534)
-|-....|+++|+..|=|--+- . ..+-.+.-+.+-+-+..|.+.||+||.-+--.-. .|..
T Consensus 75 GEiS~~mlkd~G~~wVIlGHSE-----R---R~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~le---------eREa-- 135 (247)
T KOG1643|consen 75 GEISAEMLKDLGAEWVILGHSE-----R---RHVFGESDEFIADKTAHALAEGLKVIACIGETLE---------EREA-- 135 (247)
T ss_pred CccCHHHHHhCCCCEEEecchh-----h---hhhhCCchHHHHHHHHHHHHcCCeEEEEecccHH---------hhhc--
Confidence 3556778899999998774321 1 1122233455666778899999999997643210 0000
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC-----CCChHHHHHHHHHHHHHHHh---------cCCceEE
Q 009475 309 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----GVALDTLKSYYKAGYDAVRK---------YTSTAYV 374 (534)
Q Consensus 309 ~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~-----~~~~~~~~~~~~~~~~aIR~---------~~p~~~I 374 (534)
....+...+=...++++-++-.+|+ +--||... ..++++ .|+....||+ +....-|
T Consensus 136 ---G~t~dVv~~Ql~aiad~v~~w~niv---iAYEPVWAIGTGk~atp~Q----aqEVh~~iR~wl~~~vs~~Va~~~RI 205 (247)
T KOG1643|consen 136 ---GKTLDVVFRQLKAIADKVKDWSNIV---IAYEPVWAIGTGKTATPEQ----AQEVHAEIRKWLKSNVSDAVASSTRI 205 (247)
T ss_pred ---CchHHHHHHHHHHHHHhcCCccceE---EEeeceeeecCCCCCCHHH----HHHHHHHHHHHHhhcchhhhhhceEE
Confidence 1234455556677888888766543 44578752 123332 2333333332 2223345
Q ss_pred EEeCCCCCCChhhhhcccCCCceEE
Q 009475 375 IMSNRLGPADHKELLSFASGLSRVV 399 (534)
Q Consensus 375 iv~~~~~~~~~~~~~~~~~~~~nvv 399 (534)
|.++.-...+..++.+.++-|..+|
T Consensus 206 iYGGSV~g~N~~el~~~~diDGFLV 230 (247)
T KOG1643|consen 206 IYGGSVNGGNCKELAKKPDIDGFLV 230 (247)
T ss_pred EeccccccccHHHhcccccccceEE
Confidence 5555433345566666544444443
No 276
>PLN02389 biotin synthase
Probab=24.26 E-value=5.3e+02 Score=27.51 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~ 305 (534)
.++++.++.|+++|++.+-+ +... .+.--... ....++..-+.++.|++.||.|-. |..-|.
T Consensus 175 ~l~~E~l~~LkeAGld~~~~--~LeT--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~s--g~IiGl----------- 237 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNH--NLDT--SREYYPNVITTRSYDDRLETLEAVREAGISVCS--GGIIGL----------- 237 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEe--eecC--ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeE--EEEECC-----------
Confidence 46899999999999997654 3221 01000111 124677788899999999998743 322221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEecc----CCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 009475 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN----EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (534)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N----EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~ 381 (534)
. +..+..++.+..+.+ ++.++..+.+..++ =|... .+... ..-+-+.+...|-.-|+..|-+..+|-
T Consensus 238 --g----Et~edrv~~l~~Lr~-L~~~~~~v~l~~l~P~~GTpL~~-~~~~s-~~e~lr~iAi~Rl~lP~~~i~i~~gr~ 308 (379)
T PLN02389 238 --G----EAEEDRVGLLHTLAT-LPEHPESVPINALVAVKGTPLED-QKPVE-IWEMVRMIATARIVMPKAMVRLSAGRV 308 (379)
T ss_pred --C----CCHHHHHHHHHHHHh-cccCCcEEecccceecCCCcCCC-CCCCC-HHHHHHHHHHHHHHCCCcccccccccc
Confidence 0 223444555544443 33344434343332 12111 00001 112346677788888998888876663
Q ss_pred CCChh-hhhcccCCCceEEEEEeec
Q 009475 382 PADHK-ELLSFASGLSRVVIDVHYY 405 (534)
Q Consensus 382 ~~~~~-~~~~~~~~~~nvv~d~H~Y 405 (534)
..... .-+.+ ...-|.++.-.+|
T Consensus 309 ~l~~~~~~~~l-~~GAN~~~~g~~~ 332 (379)
T PLN02389 309 RFSMAEQALCF-LAGANSIFTGDKL 332 (379)
T ss_pred ccChhHHHHHH-HhCCCEEEECCcc
Confidence 21111 11122 2345777766665
No 277
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=24.20 E-value=1.1e+02 Score=28.22 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC-CCchHHHHHHHHHHHHHCC-CEEEEE
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVD 287 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~G-l~VIlD 287 (534)
.++++.++.|++.|++.|.|.+... ++.....+ ....++.+.+.++.+.++| +.|-+.
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSG---SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccC---CHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEe
Confidence 4678999999999999888877531 11000001 1235688999999999999 555443
No 278
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.10 E-value=2e+02 Score=27.25 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 232 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 232 d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+++.++++|.+.|=++... + -..+.++++.|+++|+.++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~-----~----------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA-----D----------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC-----C----------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 6888899999998875421 1 134788999999999999999876
No 279
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=24.07 E-value=3.3e+02 Score=30.05 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCHHHHHHHHhCCccEEEeCccccc---ccCCCCCCCCCCchHHHHHHHHHHHHHCCCE-EEEEcCCCCCCCCCCCCCCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWI---ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHSAT 303 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~---~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~-VIlDlH~~pG~qng~~~sg~ 303 (534)
+|.++++.|+++|++.+-+-..-.. ...-.|..| ...++.=-+.++.|.+.||. |=+..
T Consensus 178 lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~--k~~y~~Rl~t~~rA~~aGi~~Vg~G~--------------- 240 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGP--KSDYDWRLTAMDRAMEAGIDDVGIGV--------------- 240 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCC--CCCHHHHHHHHHHHHHcCCCeeCeEE---------------
Confidence 6899999999999998766332100 000001011 12455555678888999986 52221
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCC-C-ChH--HHHHHHHHHHHHHHhcCCceEEEEeCC
Q 009475 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-V-ALD--TLKSYYKAGYDAVRKYTSTAYVIMSNR 379 (534)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~~~-~-~~~--~~~~~~~~~~~aIR~~~p~~~Iiv~~~ 379 (534)
..|-..|..+ .-......+.|-++|+-.|..+.+.-++ |.... . ..+ .=..-+.+++.++|=.-|..-|+++.+
T Consensus 241 L~GLge~~~E-~~~l~~hl~~L~~~~gvgp~tIsvprl~-P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStR 318 (469)
T PRK09613 241 LFGLYDYKFE-VLGLLMHAEHLEERFGVGPHTISVPRLR-PADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTR 318 (469)
T ss_pred EEcCCCCHHH-HHHHHHHHHHHHHhhCCCCcccccccee-cCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecC
Confidence 1233333211 1123445567778885445444333232 33210 0 010 112345678899999999988888753
No 280
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.02 E-value=2.2e+02 Score=29.34 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCC--CchHHHHHHHHHHHHHCCCE-EEEEcCCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVK-VIVDLHAAP 292 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~--~~~l~~ld~~v~~a~~~Gl~-VIlDlH~~p 292 (534)
++.++.+++.|++.|.|.+.-. ++..-..+. .+.++.+-+.++.+.+.|+. |-|.....+
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~~---~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~ 164 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDSL---DPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMR 164 (334)
T ss_pred HHHHHHHHHcCCCeEEEecccC---CHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 5678899999999999877531 221111222 24788899999999999997 777665443
No 281
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=23.76 E-value=7.3e+02 Score=25.21 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCC
Q 009475 267 SKVLDNAFDWAEKYGVKVIVDLHAAP 292 (534)
Q Consensus 267 l~~ld~~v~~a~~~Gl~VIlDlH~~p 292 (534)
-..|..-|+.|++.|+||+|.+=+..
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIGG~~ 83 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIGGAG 83 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEccCCC
Confidence 45789999999999999999987654
No 282
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=23.56 E-value=2.1e+02 Score=21.84 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHh-cCCCeEEEEEeccCCCC
Q 009475 313 SNVADTVAVIDFLAARY-ANRPSLAAIELINEPLA 346 (534)
Q Consensus 313 ~~~~~~~~~w~~lA~ry-k~~~~vlg~eL~NEP~~ 346 (534)
...+.+++.++.+++.. +..|..++++++-.+..
T Consensus 13 ~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 47 (78)
T PF03992_consen 13 GKEEEFLAAFQELAEATLRKEPGCLSYELYRSLDD 47 (78)
T ss_dssp TGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSS
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 34578899999999877 78999999998875544
No 283
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.30 E-value=75 Score=31.93 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=38.5
Q ss_pred CHHHHHHHHhCC----ccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 229 TDEDFKFLSSNG----INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 229 te~d~~~ia~~G----~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
.+++++...+.| ++.|||.++.........-..-.+..++.+.++++.|+++|+.|.+.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 478899988888 99999955321000000000011246788889999999999998754
No 284
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.44 E-value=2.2e+02 Score=28.45 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
++-++.++++||++|=|.-+.-. + ..+...++|+.++++|++|+-.++.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~---------i---~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSME---------I---SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccC---------C---CHHHHHHHHHHHHhCCCeEeccccc
Confidence 67788999999999999655311 1 2456788999999999999877653
No 285
>PRK12677 xylose isomerase; Provisional
Probab=22.14 E-value=6.8e+02 Score=26.72 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcC--CCeEEEEEec-c
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN--RPSLAAIELI-N 342 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~--~~~vlg~eL~-N 342 (534)
.++.+.+.|+.|.+.|...|+-.-+..|. +..+. ..+ ....+++++.++.|+++-++ ..-.+++|.+ |
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~----~~~~~----~d~-~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ 182 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGGREGA----EYDAA----KDV-RAALDRYREAIDLLAAYVKDQGYDLRFALEPKPN 182 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCCCCc----cCccc----CCH-HHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCC
Confidence 58889999999999999876543222211 11111 000 24556777888888887655 3355778865 2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcC
Q 009475 343 EPLAPGVALDTLKSYYKAGYDAVRKYT 369 (534)
Q Consensus 343 EP~~~~~~~~~~~~~~~~~~~aIR~~~ 369 (534)
||.. ..+..-...+...|++++
T Consensus 183 ep~~-----~~~l~t~~~al~li~~lg 204 (384)
T PRK12677 183 EPRG-----DILLPTVGHALAFIATLE 204 (384)
T ss_pred CCCC-----CeeeCCHHHHHHHHHHhC
Confidence 4442 122233445555566665
No 286
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.05 E-value=1.5e+02 Score=25.14 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=34.1
Q ss_pred CCCeEEEEEeccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCChhhhh
Q 009475 331 NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELL 389 (534)
Q Consensus 331 ~~~~vlg~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~~~~~~~~~ 389 (534)
.+|.++++.....|. .....++.+.+|+.+|+.+|++++...+..+...+
T Consensus 50 ~~pd~V~iS~~~~~~---------~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l 99 (121)
T PF02310_consen 50 ERPDVVGISVSMTPN---------LPEAKRLARAIKERNPNIPIVVGGPHATADPEEIL 99 (121)
T ss_dssp TTCSEEEEEESSSTH---------HHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHH
T ss_pred CCCcEEEEEccCcCc---------HHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHh
Confidence 378899998865554 23346677779999999999998654433344433
No 287
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=21.98 E-value=76 Score=31.93 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
|++-.+..-+.+|.++|=|.+.. .+ -+.+.++++.|+++||-|++..|.
T Consensus 117 iD~yQI~~Ar~~GADavLLI~~~---L~-----------~~~l~el~~~A~~LGm~~LVEVh~ 165 (254)
T COG0134 117 IDPYQIYEARAAGADAVLLIVAA---LD-----------DEQLEELVDRAHELGMEVLVEVHN 165 (254)
T ss_pred CCHHHHHHHHHcCcccHHHHHHh---cC-----------HHHHHHHHHHHHHcCCeeEEEECC
Confidence 45667777778888888876632 11 145899999999999999999996
No 288
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.84 E-value=2.2e+02 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEc
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
.-+.++++|+.|+++||.||..+
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcc
Confidence 57889999999999999999765
No 289
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=21.72 E-value=5.5e+02 Score=26.63 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=80.5
Q ss_pred hccCCCCCHHHHHHHHhCCccEEEe-Cccc-cccc------C---------C-C-C------CCCCCCchHHHHHHHHHH
Q 009475 222 DHWDSYITDEDFKFLSSNGINAVRI-PVGW-WIAN------D---------P-T-P------PKPFVGGSSKVLDNAFDW 276 (534)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRI-Pv~~-w~~~------~---------~-~-~------~~~~~~~~l~~ld~~v~~ 276 (534)
.||+.+| ++-++.+++.|++.|-+ |+-- +... + + . + +..-.+++++.+.+.|..
T Consensus 100 ry~~P~i-~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~ 178 (322)
T TIGR00109 100 RYGEPFT-EEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKE 178 (322)
T ss_pred ccCCCCH-HHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHHHHH
Confidence 3566555 67788888888877664 4421 0000 0 0 0 0 011123455555555543
Q ss_pred HH-H----CCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcC-CCeEEEEEeccCCCCCCCC
Q 009475 277 AE-K----YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVA 350 (534)
Q Consensus 277 a~-~----~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~-~~~vlg~eL~NEP~~~~~~ 350 (534)
+. + -...+|+..|+.|-+.-.. | +.+.++..+.-+.|+++.+. .+..++|+----|.
T Consensus 179 ~l~~~~~~~~~~llfSaHglP~~~~~~-------G-----d~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~----- 241 (322)
T TIGR00109 179 TLASFPEPDNAVLLFSAHGLPQSYVDE-------G-----DPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPE----- 241 (322)
T ss_pred HHHhcCCcCCcEEEEeCCCCchhHhhC-------C-----CChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCC-----
Confidence 32 2 2468999999999542110 1 23456777788888888873 45667787532221
Q ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 009475 351 LDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (534)
Q Consensus 351 ~~~~~~~~~~~~~aIR~~~p~~~Iiv~~~~~ 381 (534)
+-+....++.++.+.+.+.++++++..++-
T Consensus 242 -~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv 271 (322)
T TIGR00109 242 -PWLGPYTEELLEKLGEQGVQHIVVVPIGFT 271 (322)
T ss_pred -CcCCCCHHHHHHHHHHcCCceEEEECCccc
Confidence 122445666777787778888888876554
No 290
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=21.67 E-value=1.8e+02 Score=31.79 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEc
Q 009475 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
+.+++++..++.|++.|||....- + ...+..+|+.|+++|+.|.+.+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~ln---d-----------~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALN---D-----------VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC---c-----------HHHHHHHHHHHHHcCCeEEEEE
Confidence 457889999999999999955321 1 1247889999999999876654
No 291
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=21.59 E-value=4.7e+02 Score=21.65 Aligned_cols=97 Identities=11% Similarity=0.200 Sum_probs=52.2
Q ss_pred ceeEEeeeeceeEEEee---cCCCceEEeccCCCCCcceEEEEEec-CceEEEEeeCCcEEEeecCCCCceEEEeecCCC
Q 009475 66 TQVQFMSTKFQKYIAAE---SGGGTIVVANRTSASGWETFRLWRVN-ETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAG 141 (534)
Q Consensus 66 ~~~~~~s~~~~~~~~a~---~~g~~~~~anr~~~~~wetf~~~~~~-~~~~~~~~~n~~~v~~~~~g~~~~~~a~~~~~~ 141 (534)
.+|++++. .|+.|.+. ..|+..++..-.. +.-..| ... ++.+......+.-+.+...+.+..|+-..-.+.
T Consensus 3 g~i~~~~~-~~~cl~~~~~~~~~~~v~l~~c~~-~~~Q~w---~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~ 77 (124)
T PF00652_consen 3 GYIRNVNK-SGLCLDVQGSTKNGSPVVLYPCDG-SDNQLW---RFDPDGQIRSNNNPNLCLDVDGSSPGTKIVLWPCDSN 77 (124)
T ss_dssp EEEEEEEG-GGEEEEEGGSSSTTTBEEEEE--S-SGGGEE---EEETTSBEEETTETTEEEEESSSSTTEBEEEEETTTT
T ss_pred eEEEEeeC-CCCeEEEcCCCCCCCEEEEEECCC-CCceeE---EEcCCCceeeccCcceEEEeeccCCCceEEEeeccCC
Confidence 45667666 99999999 5555666665555 333344 333 334443333334444443322334666666656
Q ss_pred CC-ceEEEEEeCCCCceEEEEecCCceEEecc
Q 009475 142 YS-ETFQIVRKDGDSSRVRLSASNGMFIQAIS 172 (534)
Q Consensus 142 ~~-EtF~ivr~~~~~~~v~i~~~nG~~Lq~~g 172 (534)
.. +.|.+.. ..+++-.. +|.-|.+.+
T Consensus 78 ~~~Q~W~~~~----~~~i~n~~-s~~cL~~~~ 104 (124)
T PF00652_consen 78 SSNQRWKFDP----DGRIRNKN-SGLCLDVKG 104 (124)
T ss_dssp GGGGBEEEET----TSBEEETT-TTEEEEEGG
T ss_pred ccCCeEEEcC----CeeEEeCC-CCEEEEecC
Confidence 55 7777666 12454444 577777653
No 292
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.49 E-value=89 Score=30.30 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCCCCCCCceeeccccCcccceeeecccCCCcchhhhhhccCCCCCHHHHHH
Q 009475 184 SWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKF 235 (534)
Q Consensus 184 ~W~~~~ps~F~~~~~~~~~~E~~~~~~~G~~~a~~~~~~hw~~~ite~d~~~ 235 (534)
||.+..|.+|.+.-........-++-+.|...+..+|+++|..-+++++...
T Consensus 136 G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~ 187 (212)
T cd03751 136 GYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVK 187 (212)
T ss_pred EEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHH
Confidence 4433457888754333333334457788888899999999988888877543
No 293
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.44 E-value=61 Score=31.85 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
-.+.+...++|.+.|=+-++|...... . ....++.+.++++.|+++||+|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~----~-~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG----N-EDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT----H-HHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc----c-HHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 467888899999999998876433221 1 2347889999999999999999998
No 294
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.39 E-value=3.9e+02 Score=28.22 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCC----CCchHHHHHHHHHHHHHCCCE-EEEEcCCCCCCCCCCCCC
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF----VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 301 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~----~~~~l~~ld~~v~~a~~~Gl~-VIlDlH~~pG~qng~~~s 301 (534)
.+|+++++.++++|++.+-+-+. .. ++.--..+ ....++..-+.++.|++.|+. |-+++=-
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lE--T~-~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~----------- 224 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQE--TY-NEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALL----------- 224 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEee--cC-CHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEE-----------
Confidence 37899999999999996665332 11 11000001 012466666688999999986 4333211
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEecc---CCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeC
Q 009475 302 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN---EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (534)
Q Consensus 302 g~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~N---EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv~~ 378 (534)
|-+.|. ...-.+....+.|-.+|.+.+.-+-+-.++ .|..+.. ..=..-..+.+.++|-.-|+.-|.+++
T Consensus 225 ----Gl~e~~-~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~--~l~~~~~~~~i~~~R~~~P~~~i~~s~ 297 (366)
T TIGR02351 225 ----GLDDWR-TDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKV--IVTDRELVQIICAYRLFDPFVEISLST 297 (366)
T ss_pred ----eCchhH-HHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCC--cCCHHHHHHHHHHHHHhCcccccEEec
Confidence 111121 222234445566777777643222121112 1222110 011234557788899999999998876
Q ss_pred C
Q 009475 379 R 379 (534)
Q Consensus 379 ~ 379 (534)
+
T Consensus 298 g 298 (366)
T TIGR02351 298 R 298 (366)
T ss_pred C
Confidence 4
No 295
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=1.4e+02 Score=30.93 Aligned_cols=58 Identities=26% Similarity=0.283 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCccEEEeCccccc--ccCCCCCCCCC---C--chHHHHHHHHHHHHHCCCEEEEEc
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWI--ANDPTPPKPFV---G--GSSKVLDNAFDWAEKYGVKVIVDL 288 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~--~~~~~~~~~~~---~--~~l~~ld~~v~~a~~~Gl~VIlDl 288 (534)
++.|+.||+.|+|++=|-+--.. +.=+. ..++. . .-+..+..+|..|++.|||+|--+
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s-~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPS-SDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEeccc-cchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 67899999999999998663110 00000 01111 1 235567889999999999998644
No 296
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.20 E-value=2.9e+02 Score=30.46 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEE
Q 009475 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (534)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlD 287 (534)
-.|.+..+.+.++|++.|++-++-=.......-..+....+..+-++.+.|+++|+.||-|
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 4689999999999999999987632221111111122236777888888889999998876
No 297
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=21.08 E-value=2.2e+02 Score=27.51 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHH-HHHHC-CCEEEEEcCCC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFD-WAEKY-GVKVIVDLHAA 291 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~-~a~~~-Gl~VIlDlH~~ 291 (534)
+.--+.|.+.|++++.--- ...+..|. .+..+-.+.|+ ..+++ +|+++||+|..
T Consensus 37 ~~L~~~Le~~Gi~vihd~t-------~~~~~~y~-~sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 37 DRLAKELEEKGIGVIHDKT-------VHDGLNYE-QSYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHHHHHCCCeEEEeCC-------ccCCccHH-HHHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 3445567788999887632 11111222 33444444444 33445 68999999975
No 298
>PLN02429 triosephosphate isomerase
Probab=20.73 E-value=9.7e+02 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
|=....|++.|++.|=|- +.+.. .+-.+.-+.+.+=+..|.++||.+|+-+-
T Consensus 137 EVSa~mLkd~Gv~~ViiG-----HSERR---~~f~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 137 EISVEQLKDLGCKWVILG-----HSERR---HVIGEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred cCCHHHHHHcCCCEEEeC-----ccccC---CCCCcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 334667899999998772 22221 12223344455556669999999999865
No 299
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.57 E-value=4.5e+02 Score=23.64 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEe-ccCCCCCCCChHHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 317 DTVAVIDFLAARYANRPSLAAIEL-INEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 317 ~~~~~w~~lA~ryk~~~~vlg~eL-~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
.....+......+ .|.++.+.+ .|+-.. ..+.+.+.+.++++++.+|+..|+..|++
T Consensus 37 ~~~~~~~~~~~~~--~p~~vvi~~G~ND~~~-~~~~~~~~~~~~~lv~~i~~~~~~~~iil 94 (171)
T cd04502 37 DCLHYFDRLVLPY--QPRRVVLYAGDNDLAS-GRTPEEVLRDFRELVNRIRAKLPDTPIAI 94 (171)
T ss_pred HHHHHHHhhhccC--CCCEEEEEEecCcccC-CCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 3444444443322 444443432 677543 45678899999999999999988765555
No 300
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=20.44 E-value=8.2e+02 Score=25.36 Aligned_cols=99 Identities=9% Similarity=-0.039 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH-CCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Q 009475 268 KVLDNAFDWAEK-YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (534)
Q Consensus 268 ~~ld~~v~~a~~-~Gl~VIlDlH~~pG~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~vlg~eL~NEP~~ 346 (534)
..+.++...-++ .+++|+|.+.+...+...+ . ...=.+..++.+++-...+.++|+=+.-.+=||- |..
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiGG~~~~~~~f---~----~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~---p~~ 125 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIGGWNFGSAKF---S----AMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEY---PGQ 125 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEcCCCCCcchh---H----HHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeec---ccc
Confidence 445555444333 4899999986532110000 0 0000035556676666666677753322222332 332
Q ss_pred C---CCChHHHHHHHHHHHHHHHhcCCceEEEE
Q 009475 347 P---GVALDTLKSYYKAGYDAVRKYTSTAYVIM 376 (534)
Q Consensus 347 ~---~~~~~~~~~~~~~~~~aIR~~~p~~~Iiv 376 (534)
. ..+.+.+..+++++.+++++.+++..|.+
T Consensus 126 ~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~ 158 (362)
T cd02872 126 RGGPPEDKENFVTLLKELREAFEPEAPRLLLTA 158 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEE
Confidence 1 12345678888888888887755544444
No 301
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=20.25 E-value=2.6e+02 Score=27.28 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCccEEEeCcccccccCCCCCCCCC-CchHHHHHHHHHHHHHCCCEE
Q 009475 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKV 284 (534)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~w~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gl~V 284 (534)
|.-+..++++|.++|.+ . |.. ...++.|..+.+.|.++|+++
T Consensus 138 etAiaml~dmG~~SiKf----f---------Pm~Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKF----F---------PMGGLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeE----e---------ecCCcccHHHHHHHHHHHHHcCcee
Confidence 66788899999999996 1 111 137889999999999999998
No 302
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=20.21 E-value=1.4e+02 Score=30.88 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEcCC
Q 009475 265 GSSKVLDNAFDWAEKYGVKVIVDLHA 290 (534)
Q Consensus 265 ~~l~~ld~~v~~a~~~Gl~VIlDlH~ 290 (534)
+.+.-++++.+.|+++|+.+++|-=+
T Consensus 152 G~~~~~~~I~~l~~~~~~~~ivD~a~ 177 (353)
T TIGR03235 152 GSIQPIREIAEVLEAHEAFFHVDAAQ 177 (353)
T ss_pred eeccCHHHHHHHHHHcCCEEEEEchh
Confidence 45556899999999999999999743
No 303
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=20.20 E-value=2.4e+02 Score=28.94 Aligned_cols=24 Identities=17% Similarity=-0.019 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEcC
Q 009475 266 SSKVLDNAFDWAEKYGVKVIVDLH 289 (534)
Q Consensus 266 ~l~~ld~~v~~a~~~Gl~VIlDlH 289 (534)
..+.+++++++|+++|+.||+|=.
T Consensus 142 s~~~l~~l~~~~~~~~~~iI~DE~ 165 (330)
T PRK05664 142 DPARLLAWHARLAARGGWLVVDEA 165 (330)
T ss_pred CHHHHHHHHHHHHhcCCEEEEECC
Confidence 578899999999999999999954
Done!