Query 009476
Match_columns 534
No_of_seqs 170 out of 319
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 13:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2549 Transcription initiati 100.0 3E-116 7E-121 931.4 36.6 529 2-534 9-576 (576)
2 COG5095 TAF6 Transcription ini 100.0 7E-104 1E-108 788.5 26.2 387 3-392 5-413 (450)
3 cd08050 TAF6 TATA Binding Prot 100.0 1.5E-96 3E-101 766.5 33.5 333 5-338 1-343 (343)
4 PF07571 DUF1546: Protein of u 100.0 1.4E-30 2.9E-35 224.3 5.3 91 259-349 1-92 (92)
5 PF02969 TAF: TATA box binding 99.9 1.3E-25 2.7E-30 181.9 8.3 66 1-66 1-66 (66)
6 smart00803 TAF TATA box bindin 99.8 5.9E-20 1.3E-24 148.8 8.9 65 2-66 1-65 (65)
7 cd00076 H4 Histone H4, one of 99.5 2.4E-13 5.1E-18 115.7 9.2 74 2-76 12-85 (85)
8 PLN00035 histone H4; Provision 99.5 2.9E-13 6.3E-18 118.6 9.5 74 3-77 29-102 (103)
9 PTZ00015 histone H4; Provision 99.4 7.8E-13 1.7E-17 115.9 9.2 73 3-76 30-102 (102)
10 COG2036 HHT1 Histones H3 and H 98.9 3.3E-09 7.1E-14 91.5 6.6 70 2-71 18-87 (91)
11 smart00417 H4 Histone H4. 98.9 6.1E-09 1.3E-13 86.6 6.7 62 3-64 13-74 (74)
12 cd07979 TAF9 TATA Binding Prot 98.6 1.5E-07 3.2E-12 85.0 9.1 71 6-79 4-74 (117)
13 smart00576 BTP Bromodomain tra 98.4 1.9E-06 4E-11 72.1 8.5 65 6-70 9-73 (77)
14 PF00125 Histone: Core histone 98.2 2.7E-06 6E-11 69.9 6.2 65 3-67 5-74 (75)
15 PF00808 CBFD_NFYB_HMF: Histon 98.1 1.2E-05 2.7E-10 64.7 7.9 63 3-65 2-65 (65)
16 cd07981 TAF12 TATA Binding Pro 98.0 2.9E-05 6.3E-10 64.3 8.9 64 4-67 2-66 (72)
17 KOG3467 Histone H4 [Chromatin 97.9 6.2E-05 1.3E-09 64.1 7.8 73 4-77 30-102 (103)
18 PF07524 Bromo_TP: Bromodomain 97.8 0.00017 3.6E-09 60.1 8.8 65 6-70 9-73 (77)
19 cd00074 H2A Histone 2A; H2A is 97.6 0.00016 3.4E-09 65.4 7.3 65 3-67 20-85 (115)
20 smart00428 H3 Histone H3. 97.6 0.00029 6.3E-09 62.6 7.7 63 8-70 38-103 (105)
21 PF02291 TFIID-31kDa: Transcri 97.1 0.0016 3.5E-08 60.0 7.7 62 7-68 16-77 (129)
22 PF15630 CENP-S: Kinetochore c 96.9 0.0039 8.4E-08 52.5 7.7 59 8-66 10-71 (76)
23 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0042 9.2E-08 54.4 6.8 77 230-319 7-83 (97)
24 PLN00160 histone H3; Provision 96.2 0.015 3.2E-07 51.1 6.9 63 8-70 30-94 (97)
25 PLN00121 histone H3; Provision 96.2 0.015 3.2E-07 54.1 6.9 62 8-70 71-134 (136)
26 PTZ00018 histone H3; Provision 96.2 0.014 3.1E-07 54.2 6.8 63 8-71 71-135 (136)
27 KOG3334 Transcription initiati 96.1 0.021 4.5E-07 53.3 7.6 63 8-70 18-80 (148)
28 PLN00161 histone H3; Provision 96.1 0.024 5.2E-07 52.5 7.9 66 8-73 64-131 (135)
29 KOG0869 CCAAT-binding factor, 95.7 0.044 9.5E-07 51.8 7.9 69 3-71 32-102 (168)
30 cd08048 TAF11 TATA Binding Pro 95.7 0.06 1.3E-06 46.2 8.1 66 3-68 16-84 (85)
31 PF12348 CLASP_N: CLASP N term 95.5 0.15 3.2E-06 49.8 11.2 180 188-388 20-214 (228)
32 PF15511 CENP-T: Centromere ki 94.4 0.096 2.1E-06 57.0 7.1 58 3-60 351-414 (414)
33 PF03847 TFIID_20kDa: Transcri 94.4 0.22 4.8E-06 41.1 7.6 61 7-67 3-64 (68)
34 COG5094 TAF9 Transcription ini 94.3 0.1 2.2E-06 47.6 5.9 61 8-68 19-82 (145)
35 KOG1142 Transcription initiati 94.3 0.12 2.5E-06 52.7 6.9 71 16-87 168-239 (258)
36 smart00414 H2A Histone 2A. 93.3 0.26 5.6E-06 44.1 6.6 65 3-67 9-74 (106)
37 KOG4336 TBP-associated transcr 92.9 0.29 6.3E-06 50.9 7.2 70 8-77 10-81 (323)
38 KOG0870 DNA polymerase epsilon 92.9 0.41 8.9E-06 45.8 7.6 71 3-73 10-83 (172)
39 KOG2389 Predicted bromodomain 92.8 0.28 6.1E-06 51.8 7.0 67 5-71 31-97 (353)
40 COG5262 HTA1 Histone H2A [Chro 92.5 0.26 5.6E-06 44.7 5.4 65 2-66 25-90 (132)
41 PLN00154 histone H2A; Provisio 92.5 0.42 9.1E-06 44.5 6.9 65 3-67 38-104 (136)
42 PF04719 TAFII28: hTAFII28-lik 92.1 0.64 1.4E-05 40.5 7.2 66 2-67 22-89 (90)
43 PF02985 HEAT: HEAT repeat; I 91.9 0.32 6.9E-06 33.4 4.2 30 255-293 1-30 (31)
44 KOG2023 Nuclear transport rece 91.7 1 2.2E-05 51.6 10.0 194 194-404 377-570 (885)
45 KOG2023 Nuclear transport rece 91.4 3.1 6.8E-05 47.8 13.4 120 233-358 276-444 (885)
46 KOG1756 Histone 2A [Chromatin 91.3 0.5 1.1E-05 43.4 5.9 64 3-66 27-91 (131)
47 smart00427 H2B Histone H2B. 91.2 0.58 1.3E-05 40.6 6.0 49 20-68 19-67 (89)
48 PF12460 MMS19_C: RNAPII trans 90.9 11 0.00024 40.8 17.0 192 194-393 24-234 (415)
49 PTZ00017 histone H2A; Provisio 90.6 0.61 1.3E-05 43.4 5.9 64 4-67 28-92 (134)
50 KOG2171 Karyopherin (importin) 90.6 5.6 0.00012 48.0 15.1 254 174-440 4-308 (1075)
51 PF13513 HEAT_EZ: HEAT-like re 90.6 0.16 3.4E-06 38.9 1.8 55 277-333 1-55 (55)
52 PTZ00463 histone H2B; Provisio 89.6 1.1 2.4E-05 40.7 6.5 48 21-68 47-94 (117)
53 KOG1242 Protein containing ada 89.4 16 0.00034 41.7 16.7 208 168-391 168-455 (569)
54 PLN00158 histone H2B; Provisio 88.9 1.2 2.6E-05 40.4 6.3 48 21-68 46-93 (116)
55 PLN00156 histone H2AX; Provisi 88.8 0.67 1.5E-05 43.3 4.8 64 4-67 30-94 (139)
56 PLN00157 histone H2A; Provisio 88.8 0.88 1.9E-05 42.2 5.5 64 4-67 27-91 (132)
57 PLN00153 histone H2A; Provisio 87.8 1.2 2.6E-05 41.2 5.7 64 4-67 25-89 (129)
58 KOG0212 Uncharacterized conser 87.3 6.4 0.00014 44.6 11.8 148 176-357 24-176 (675)
59 PF02269 TFIID-18kDa: Transcri 87.1 0.7 1.5E-05 40.2 3.6 49 19-67 18-66 (93)
60 KOG1745 Histones H3 and H4 [Ch 87.1 0.37 8.1E-06 44.9 1.9 50 21-70 86-135 (137)
61 KOG1242 Protein containing ada 86.7 36 0.00077 38.9 17.4 145 175-335 134-283 (569)
62 PF14911 MMS22L_C: S-phase gen 86.7 7.3 0.00016 42.2 11.7 137 212-356 204-352 (373)
63 cd07978 TAF13 The TATA Binding 85.6 2.5 5.5E-05 36.8 6.3 58 9-67 8-66 (92)
64 PRK07452 DNA polymerase III su 84.4 2.6 5.7E-05 43.6 7.0 60 6-66 136-197 (326)
65 PF05236 TAF4: Transcription i 84.3 0.92 2E-05 46.4 3.4 64 7-70 51-120 (264)
66 KOG1824 TATA-binding protein-i 84.1 17 0.00038 43.5 13.7 135 205-350 514-653 (1233)
67 PF09415 CENP-X: CENP-S associ 82.9 1.7 3.7E-05 36.3 3.8 61 5-66 1-66 (72)
68 cd08045 TAF4 TATA Binding Prot 82.5 4.5 9.7E-05 40.1 7.4 63 7-69 52-120 (212)
69 PTZ00252 histone H2A; Provisio 82.2 4.1 9E-05 37.9 6.4 64 4-67 26-92 (134)
70 PRK06585 holA DNA polymerase I 81.9 3.3 7.1E-05 43.3 6.5 61 6-67 148-209 (343)
71 TIGR01128 holA DNA polymerase 81.6 4 8.8E-05 41.3 6.9 60 7-67 118-177 (302)
72 PRK05574 holA DNA polymerase I 81.5 3.9 8.5E-05 42.2 6.9 60 7-67 153-212 (340)
73 KOG0871 Class 2 transcription 81.0 8.8 0.00019 36.4 8.2 67 4-70 13-81 (156)
74 COG1466 HolA DNA polymerase II 80.3 4.6 9.9E-05 42.5 6.9 59 7-66 147-205 (334)
75 cd00020 ARM Armadillo/beta-cat 79.9 6.9 0.00015 33.0 6.8 94 208-316 8-103 (120)
76 PRK07914 hypothetical protein; 77.9 4.9 0.00011 41.9 6.3 59 6-66 134-192 (320)
77 cd00020 ARM Armadillo/beta-cat 77.5 18 0.00039 30.4 8.7 70 207-291 49-119 (120)
78 PRK05907 hypothetical protein; 77.3 5.4 0.00012 41.9 6.4 60 6-66 140-201 (311)
79 PRK05629 hypothetical protein; 76.6 6.8 0.00015 40.8 6.8 58 7-66 133-190 (318)
80 PF11864 DUF3384: Domain of un 76.4 62 0.0013 35.8 14.6 159 168-333 64-283 (464)
81 KOG3219 Transcription initiati 75.9 3.7 8E-05 40.5 4.3 70 2-71 111-181 (195)
82 KOG3423 Transcription initiati 75.7 15 0.00032 35.6 8.1 68 3-70 86-167 (176)
83 PRK08487 DNA polymerase III su 75.6 8.1 0.00018 40.4 7.2 58 6-66 141-198 (328)
84 PF13251 DUF4042: Domain of un 74.2 20 0.00043 35.1 8.9 139 233-383 6-177 (182)
85 PF01602 Adaptin_N: Adaptin N 73.4 39 0.00085 36.8 12.1 69 251-333 111-179 (526)
86 PF13654 AAA_32: AAA domain; P 72.2 11 0.00024 42.3 7.5 61 8-68 435-506 (509)
87 PF03540 TFIID_30kDa: Transcri 69.4 28 0.00061 27.4 7.0 48 3-50 2-49 (51)
88 KOG2171 Karyopherin (importin) 69.2 1.2E+02 0.0027 37.1 15.4 184 193-393 330-514 (1075)
89 TIGR02902 spore_lonB ATP-depen 68.1 17 0.00038 40.9 8.0 61 9-70 272-334 (531)
90 PRK09687 putative lyase; Provi 67.7 20 0.00043 37.0 7.8 57 274-336 102-158 (280)
91 PF10508 Proteasom_PSMB: Prote 67.6 52 0.0011 36.8 11.5 159 172-342 35-199 (503)
92 TIGR02397 dnaX_nterm DNA polym 64.7 14 0.00031 38.2 6.1 58 7-66 183-240 (355)
93 COG5247 BUR6 Class 2 transcrip 64.5 21 0.00046 31.9 6.0 63 3-67 23-88 (113)
94 PF03224 V-ATPase_H_N: V-ATPas 61.7 1.7E+02 0.0036 30.4 13.3 157 166-343 24-188 (312)
95 PRK12402 replication factor C 61.0 19 0.00041 37.0 6.1 58 7-67 191-248 (337)
96 PF12717 Cnd1: non-SMC mitotic 60.5 71 0.0015 30.4 9.6 103 276-393 1-106 (178)
97 PF08506 Cse1: Cse1; InterPro 59.8 43 0.00093 36.2 8.8 107 275-381 223-338 (370)
98 KOG1824 TATA-binding protein-i 59.8 2.8E+02 0.006 34.1 15.5 144 226-383 226-405 (1233)
99 KOG1744 Histone H2B [Chromatin 59.5 25 0.00055 32.5 5.9 48 21-68 56-103 (127)
100 PF03378 CAS_CSE1: CAS/CSE pro 58.7 90 0.002 34.5 11.2 141 247-409 19-176 (435)
101 PRK09687 putative lyase; Provi 58.5 2.3E+02 0.0049 29.3 16.6 133 172-336 88-222 (280)
102 KOG3901 Transcription initiati 55.5 29 0.00063 31.2 5.4 42 23-67 30-71 (109)
103 PF06371 Drf_GBD: Diaphanous G 55.1 11 0.00024 35.4 3.1 78 203-291 107-186 (187)
104 PRK14964 DNA polymerase III su 54.2 27 0.00058 39.2 6.2 58 7-66 182-239 (491)
105 PRK09087 hypothetical protein; 52.5 67 0.0014 32.0 8.2 60 8-68 161-222 (226)
106 PF12348 CLASP_N: CLASP N term 52.0 1.6E+02 0.0035 28.4 10.8 64 225-297 143-211 (228)
107 COG5248 TAF19 Transcription in 51.9 36 0.00079 30.8 5.4 43 23-67 30-72 (126)
108 KOG0212 Uncharacterized conser 51.5 2.3E+02 0.0051 32.7 12.7 140 206-359 162-302 (675)
109 PF12074 DUF3554: Domain of un 51.3 78 0.0017 33.2 8.9 91 215-315 164-255 (339)
110 TIGR00764 lon_rel lon-related 51.1 51 0.0011 37.9 8.0 60 9-68 318-391 (608)
111 KOG1241 Karyopherin (importin) 51.0 5E+02 0.011 31.1 15.6 173 201-386 485-674 (859)
112 PF12719 Cnd3: Nuclear condens 50.9 36 0.00079 35.1 6.3 57 275-333 76-141 (298)
113 PRK14970 DNA polymerase III su 48.5 39 0.00085 35.6 6.2 57 8-66 175-231 (367)
114 KOG1823 DRIM (Down-regulated i 48.0 62 0.0013 40.5 8.3 117 233-361 544-663 (1364)
115 COG5150 Class 2 transcription 47.3 89 0.0019 29.1 7.3 68 4-71 12-81 (148)
116 TIGR03015 pepcterm_ATPase puta 46.7 74 0.0016 31.5 7.6 58 12-69 204-267 (269)
117 PRK14961 DNA polymerase III su 45.9 33 0.00071 36.6 5.1 62 8-71 186-247 (363)
118 COG5208 HAP5 CCAAT-binding fac 45.6 36 0.00079 34.3 4.9 67 4-70 110-177 (286)
119 PF10274 ParcG: Parkin co-regu 45.0 87 0.0019 30.8 7.5 92 202-296 71-168 (183)
120 PF13646 HEAT_2: HEAT repeats; 44.7 79 0.0017 25.5 6.2 51 274-336 11-61 (88)
121 PF12460 MMS19_C: RNAPII trans 44.2 4.5E+02 0.0097 28.5 14.2 199 171-392 186-406 (415)
122 PF05004 IFRD: Interferon-rela 44.0 2.5E+02 0.0055 29.5 11.3 98 247-354 79-184 (309)
123 PRK09111 DNA polymerase III su 43.0 50 0.0011 38.0 6.3 58 7-66 198-255 (598)
124 PF01602 Adaptin_N: Adaptin N 43.0 3.2E+02 0.0069 29.8 12.4 57 278-339 392-448 (526)
125 KOG1851 Uncharacterized conser 42.9 1.1E+02 0.0023 39.1 9.1 123 197-333 1511-1636(1710)
126 PF13513 HEAT_EZ: HEAT-like re 42.9 25 0.00055 26.5 2.8 42 240-290 14-55 (55)
127 KOG1241 Karyopherin (importin) 42.7 3.4E+02 0.0074 32.4 12.7 136 207-353 360-503 (859)
128 KOG1659 Class 2 transcription 42.4 82 0.0018 31.7 6.8 67 3-69 13-80 (224)
129 PRK06620 hypothetical protein; 42.0 62 0.0013 32.0 6.1 57 8-66 155-214 (214)
130 PRK08727 hypothetical protein; 41.7 72 0.0016 31.7 6.6 57 9-67 171-230 (233)
131 PRK14953 DNA polymerase III su 41.2 57 0.0012 36.5 6.3 57 7-65 185-241 (486)
132 COG5593 Nucleic-acid-binding p 40.4 50 0.0011 37.5 5.5 111 210-333 174-294 (821)
133 PRK14955 DNA polymerase III su 40.4 62 0.0013 35.0 6.3 58 8-66 194-255 (397)
134 PRK00440 rfc replication facto 40.3 66 0.0014 32.6 6.2 57 7-66 168-224 (319)
135 KOG1967 DNA repair/transcripti 38.9 2.4E+02 0.0052 34.3 10.9 118 244-377 899-1021(1030)
136 PF12231 Rif1_N: Rap1-interact 38.9 5.2E+02 0.011 27.7 18.4 202 165-383 80-306 (372)
137 PTZ00429 beta-adaptin; Provisi 38.3 5.4E+02 0.012 30.7 13.8 76 246-334 132-207 (746)
138 KOG0567 HEAT repeat-containing 37.8 50 0.0011 34.5 4.7 74 305-379 4-97 (289)
139 KOG1967 DNA repair/transcripti 37.3 1.8E+02 0.004 35.2 9.6 140 173-319 862-1010(1030)
140 KOG0915 Uncharacterized conser 37.1 74 0.0016 40.3 6.7 79 200-293 991-1069(1702)
141 PRK00411 cdc6 cell division co 37.0 1.2E+02 0.0027 32.0 7.8 49 20-68 228-282 (394)
142 PF08623 TIP120: TATA-binding 36.6 1.8E+02 0.0038 28.3 8.0 127 248-382 3-139 (169)
143 PRK14962 DNA polymerase III su 36.4 85 0.0018 35.0 6.7 58 8-67 184-241 (472)
144 COG1938 Archaeal enzymes of AT 35.5 96 0.0021 31.9 6.3 46 8-54 192-237 (244)
145 PRK14954 DNA polymerase III su 35.3 65 0.0014 37.3 5.7 58 8-66 194-255 (620)
146 KOG1248 Uncharacterized conser 35.0 9.2E+02 0.02 30.3 15.0 150 279-438 799-961 (1176)
147 PRK06645 DNA polymerase III su 34.4 89 0.0019 35.3 6.5 60 7-67 194-255 (507)
148 PRK08084 DNA replication initi 34.1 1.3E+02 0.0028 29.9 7.0 57 9-66 176-234 (235)
149 TIGR03420 DnaA_homol_Hda DnaA 33.1 1.8E+02 0.0038 27.9 7.6 56 9-66 168-226 (226)
150 COG1067 LonB Predicted ATP-dep 33.0 1.2E+02 0.0026 35.3 7.4 60 9-68 327-399 (647)
151 PRK14971 DNA polymerase III su 32.4 67 0.0014 37.1 5.2 58 7-66 187-244 (614)
152 KOG1248 Uncharacterized conser 32.3 3.8E+02 0.0083 33.4 11.4 116 169-297 780-903 (1176)
153 COG5162 Transcription initiati 32.0 2.3E+02 0.005 27.6 7.8 47 3-49 88-134 (197)
154 TIGR00635 ruvB Holliday juncti 32.0 1.8E+02 0.0039 29.5 7.8 60 8-68 167-229 (305)
155 PRK14963 DNA polymerase III su 31.7 96 0.0021 34.9 6.2 56 7-65 182-237 (504)
156 TIGR00362 DnaA chromosomal rep 30.0 1.3E+02 0.0028 32.4 6.7 58 8-67 276-336 (405)
157 PRK04195 replication factor C 29.8 1.2E+02 0.0026 33.7 6.5 55 8-65 168-222 (482)
158 PRK06305 DNA polymerase III su 29.6 1.2E+02 0.0025 33.6 6.4 56 8-65 188-243 (451)
159 PF12755 Vac14_Fab1_bd: Vacuol 29.0 3.6E+02 0.0077 23.5 8.0 82 285-372 8-89 (97)
160 KOG1240 Protein kinase contain 28.6 4E+02 0.0086 33.6 10.6 153 185-347 472-662 (1431)
161 PRK14958 DNA polymerase III su 28.5 89 0.0019 35.2 5.3 65 8-74 186-250 (509)
162 PRK00080 ruvB Holliday junctio 28.3 2.2E+02 0.0047 29.7 7.8 62 8-70 188-252 (328)
163 PRK14959 DNA polymerase III su 28.2 1.3E+02 0.0027 35.1 6.4 56 8-65 186-241 (624)
164 PRK06893 DNA replication initi 27.8 1.8E+02 0.0039 28.8 6.8 58 8-66 169-228 (229)
165 PF14500 MMS19_N: Dos2-interac 27.5 3.9E+02 0.0084 27.5 9.3 110 268-383 4-114 (262)
166 PF10363 DUF2435: Protein of u 27.5 2E+02 0.0043 24.9 6.2 66 277-346 17-82 (92)
167 cd00155 RasGEF Guanine nucleot 27.4 2.5E+02 0.0054 27.6 7.7 73 167-242 118-200 (237)
168 PRK05563 DNA polymerase III su 27.2 1.3E+02 0.0029 34.2 6.4 57 7-65 185-241 (559)
169 TIGR02928 orc1/cdc6 family rep 27.0 2.8E+02 0.0062 28.8 8.5 49 20-68 220-274 (365)
170 COG5064 SRP1 Karyopherin (impo 27.0 3.6E+02 0.0079 29.5 9.0 169 168-358 63-260 (526)
171 KOG0211 Protein phosphatase 2A 26.5 2.9E+02 0.0062 33.0 9.0 141 201-349 431-604 (759)
172 PRK14950 DNA polymerase III su 26.5 1.4E+02 0.0029 34.2 6.3 57 8-66 187-243 (585)
173 KOG3547 Bestrophin (Best vitel 26.4 83 0.0018 35.1 4.4 68 165-245 51-118 (450)
174 COG5096 Vesicle coat complex, 26.4 9.3E+02 0.02 28.9 13.0 145 169-336 50-196 (757)
175 KOG0567 HEAT repeat-containing 26.4 87 0.0019 32.8 4.2 84 294-378 142-247 (289)
176 PRK13765 ATP-dependent proteas 26.3 2.4E+02 0.0051 32.9 8.2 58 9-66 324-398 (637)
177 PTZ00361 26 proteosome regulat 26.2 68 0.0015 35.5 3.7 37 31-67 387-423 (438)
178 PRK14960 DNA polymerase III su 25.8 98 0.0021 36.4 5.0 63 7-71 184-246 (702)
179 PRK08451 DNA polymerase III su 25.8 1.6E+02 0.0034 33.7 6.5 58 7-66 183-240 (535)
180 PRK08691 DNA polymerase III su 25.6 1.7E+02 0.0036 34.6 6.8 60 7-68 185-244 (709)
181 PF08064 UME: UME (NUC010) dom 24.5 2.5E+02 0.0055 24.7 6.4 74 305-384 12-87 (107)
182 KOG1658 DNA polymerase epsilon 24.4 54 0.0012 31.5 2.2 69 1-69 57-126 (162)
183 PF03542 Tuberin: Tuberin; In 24.4 6.4E+02 0.014 27.3 10.6 122 226-355 155-283 (356)
184 KOG2032 Uncharacterized conser 24.2 4.3E+02 0.0093 30.1 9.3 108 278-389 273-380 (533)
185 COG5181 HSH155 U2 snRNP splice 24.2 6.1E+02 0.013 30.0 10.6 128 246-383 596-762 (975)
186 KOG1991 Nuclear transport rece 24.2 1.4E+03 0.031 28.2 14.5 136 208-353 407-552 (1010)
187 PF07766 LETM1: LETM1-like pro 23.8 2.4E+02 0.0053 29.0 7.1 67 4-73 171-237 (268)
188 smart00567 EZ_HEAT E-Z type HE 23.6 1.5E+02 0.0033 19.6 3.8 29 277-315 1-29 (30)
189 smart00147 RasGEF Guanine nucl 23.6 3.1E+02 0.0067 27.1 7.6 71 167-241 118-198 (242)
190 PRK06647 DNA polymerase III su 23.1 1.8E+02 0.0039 33.3 6.4 58 8-67 186-243 (563)
191 PF04695 Pex14_N: Peroxisomal 22.7 47 0.001 30.7 1.5 35 38-72 3-51 (136)
192 KOG2274 Predicted importin 9 [ 22.1 7.7E+02 0.017 30.2 11.2 148 230-393 634-786 (1005)
193 COG4996 Predicted phosphatase 22.0 75 0.0016 30.1 2.6 74 36-109 41-135 (164)
194 cd05136 RasGAP_DAB2IP The DAB2 21.8 9.6E+02 0.021 25.3 11.5 112 197-315 39-164 (309)
195 TIGR01242 26Sp45 26S proteasom 21.7 94 0.002 32.9 3.7 33 35-67 330-362 (364)
196 PRK00149 dnaA chromosomal repl 21.6 1.7E+02 0.0036 32.1 5.7 59 8-68 288-349 (450)
197 PF10521 DUF2454: Protein of u 21.4 2.7E+02 0.0059 28.6 6.9 89 236-333 100-204 (282)
198 PF14500 MMS19_N: Dos2-interac 21.4 8.4E+02 0.018 25.0 10.4 116 187-314 11-133 (262)
199 PF08369 PCP_red: Proto-chloro 21.2 1.4E+02 0.0031 22.6 3.5 32 33-64 12-44 (45)
200 PF09862 DUF2089: Protein of u 21.2 1.1E+02 0.0024 27.8 3.5 26 287-312 52-77 (113)
201 COG1224 TIP49 DNA helicase TIP 21.2 2E+02 0.0043 31.7 5.8 58 9-67 370-431 (450)
202 PRK14965 DNA polymerase III su 20.9 1.9E+02 0.0042 33.0 6.2 56 8-65 186-241 (576)
203 smart00323 RasGAP GTPase-activ 20.6 4.6E+02 0.01 27.6 8.6 117 206-331 69-203 (344)
204 PRK14087 dnaA chromosomal repl 20.4 2.2E+02 0.0049 31.4 6.4 60 8-67 283-347 (450)
205 PRK14957 DNA polymerase III su 20.4 2.2E+02 0.0047 32.6 6.3 58 8-67 186-243 (546)
206 PRK05896 DNA polymerase III su 20.4 2.3E+02 0.005 32.9 6.6 55 8-64 186-240 (605)
207 COG1737 RpiR Transcriptional r 20.4 2.7E+02 0.0058 28.6 6.6 76 4-81 48-143 (281)
208 PRK14951 DNA polymerase III su 20.2 2.1E+02 0.0045 33.3 6.2 57 7-65 190-246 (618)
No 1
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-116 Score=931.35 Aligned_cols=529 Identities=40% Similarity=0.602 Sum_probs=450.2
Q ss_pred CCCC-hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCC
Q 009476 2 SIVP-KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (534)
Q Consensus 2 s~~~-~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s~~ 80 (534)
++++ +|+++.+|||+||++|+||+|+.||+||||||+||+|+|.|||+|+||++||++||+.||+++|+||+|||.+++
T Consensus 9 ~v~s~~Es~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~nVep~yg~~s~~ 88 (576)
T KOG2549|consen 9 TVVSPKESVKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLNVEPLYGFGAQE 88 (576)
T ss_pred cccCcHHHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcccccccCcccCc
Confidence 4566 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCC-CceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC--------CccCc----
Q 009476 81 SLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA--------VSDGR---- 147 (534)
Q Consensus 81 pl~f~~~~g~-~~ly~~eD~eVdl~~ii~~~LPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~--------p~~~k---- 147 (534)
+++|+++.|+ +++||.+|+||||++++++|+||+|+++++++|||+||||||+|||||++.. +....
T Consensus 89 ~i~fr~a~~~~r~ly~~~d~EVD~d~~i~~plpkvP~d~~i~sHWL~iEGVQP~iPeNp~p~~~~~~~~~~~~~~~~~~~ 168 (576)
T KOG2549|consen 89 IIPFRKASGGGRELYYPEDEEVDLDEIINAPLPKVPLDVSIKSHWLAIEGVQPAIPENPPPLEKNVQKKEVIEPAIKAPE 168 (576)
T ss_pred eeeccccCCCCceeecCchhhcchhhhhcCCCCCCCccceeeeeeeeeccccccCCCCCCccccchhhhcccchhhhccC
Confidence 9999998654 8999999999999999999999999999999999999999999999997521 00000
Q ss_pred --------cc-c---cccCCceeeccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHH
Q 009476 148 --------RS-E---YREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYF 215 (534)
Q Consensus 148 --------~~-~---~k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~F 215 (534)
++ + ....+.++.+||.++|+||+|||+||++||++|++ +++.+|++||++|+||+|||||+|||++|
T Consensus 169 ~~~~~~~~~~~~~~~~~k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~f 247 (576)
T KOG2549|consen 169 GNNPGASTKSSDAVKTLKIGEPVELKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTF 247 (576)
T ss_pred CCCCCccccccccccccccCCcccccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHH
Confidence 00 0 01235678999999999999999999999999998 56778999999999999999999999999
Q ss_pred HHHHHhhh--cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchHHHHHHHHHHHHHHH
Q 009476 216 ISEEVTRS--LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICT 292 (534)
Q Consensus 216 I~e~V~~n--l~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~ 292 (534)
|+|+|+.| ++|+..|+++|+|++||++||+|++|||||+|||+||||+|+|++|.++ .||||+||||||++|+.||+
T Consensus 248 Iae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k 327 (576)
T KOG2549|consen 248 IAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICK 327 (576)
T ss_pred HhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHH
Confidence 99999999 7999999999999999999999999999999999999999999999974 79999999999999999999
Q ss_pred HhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHH
Q 009476 293 RFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAW 372 (534)
Q Consensus 293 k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~ 372 (534)
+||+.|.+|++||++||.|+|+|+++++++|||||+||++||.++|+.+|+|+|..|+.+|++++..+..+|.+.+.||+
T Consensus 328 ~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~ 407 (576)
T KOG2549|consen 328 NFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEAN 407 (576)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhh--hcCCCccccccccC-cccccCCCCccCccccccCCCCcccccccCC-CCcccc--Cc
Q 009476 373 RVYGALQCAAGLCVYDRLKTV--LLRPPKQSRWESNR-KGMIVFPSKRKASMDNLMLQPPVKKMATLGP-MGVMPV--NS 446 (534)
Q Consensus 373 ~v~~all~a~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~ 446 (534)
+||++|+.|+..|+++++... ...|-.+...++.| .++.....+|+++-++..-.-|.+.+. +++ +..++. ..
T Consensus 408 ~v~~~llk~~~~ii~~~l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~~~~~~~~~~~ 486 (576)
T KOG2549|consen 408 KVYGALLKAENPIIRDKLNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPVMSSAQSLTST 486 (576)
T ss_pred hHHHHHHHHhhHHHHhhhccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCcccccccccccc
Confidence 999999999999999999998 33555677777777 888899999987755544444555554 222 111111 11
Q ss_pred ccccCCCCCCCCCcccCCCCCcc--c--hhhhhhhhhhhhcccccchhhHHHHHHHHhhhccCccchhHHHHHHhccccc
Q 009476 447 MAVNMQGPSGGFSTPVEGPRAGV--S--MLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMF 522 (534)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge~~l 522 (534)
+.+.+.-+..|.|..+..|.+.. + .-++.+ ..+.+.|-.++...-+..++.|+++.+++..|....+..+.+..
T Consensus 487 ~~v~~~~~~~g~p~~~t~p~~~~~~~~~~~~~~~--~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 564 (576)
T KOG2549|consen 487 QQVSSPTEAPGSPSTSTGPVTSEVPSVVTESTSG--PKVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSGS 564 (576)
T ss_pred ceecCCCCCCCCCccCCCCcccCCCCcccccccC--CccccCCCceeeecccccccccCCCCCCCCccccccCCCCCCcc
Confidence 11222211112222221111111 0 001111 13334446677777888999999999999999999999999999
Q ss_pred cccCCccccccC
Q 009476 523 SFTRKSELYFFL 534 (534)
Q Consensus 523 ~f~p~~e~~~fl 534 (534)
+|.++.+++.|.
T Consensus 565 ~~~~~~q~~~~~ 576 (576)
T KOG2549|consen 565 PACGSKQESVDS 576 (576)
T ss_pred ccccccccccCC
Confidence 999999999774
No 2
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.5e-104 Score=788.50 Aligned_cols=387 Identities=43% Similarity=0.680 Sum_probs=353.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCCCc
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSL 82 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s~~pl 82 (534)
+|++||||++|||+||+|++||++++||.|+||||+||+|+|.|||+||||++||++||+.||+.+|+||+|||....|+
T Consensus 5 ~ws~et~KdvAeslGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lNVePLyGyd~~r~l 84 (450)
T COG5095 5 LWSKETLKDVAESLGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLNVEPLYGYDPSRPL 84 (450)
T ss_pred eecHHHHHHHHHHcCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcCCCcccCCCCCcch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceec--CCCCceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC------CccCc-------
Q 009476 83 RFKRA--SGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA------VSDGR------- 147 (534)
Q Consensus 83 ~f~~~--~g~~~ly~~eD~eVdl~~ii~~~LPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~------p~~~k------- 147 (534)
.|..+ .+++.+||++|+||||+++||+||||+|+.+++++||||||||||+|||||.... ++...
T Consensus 85 ~fs~v~~g~gqsvYYlddEEvDfe~~in~PLPkVPr~~s~~sHWLAiEGVQPaIpqNP~l~d~~V~~~~~k~T~g~~~~a 164 (450)
T COG5095 85 QFSLVFRGLGQSVYYLDDEEVDFEEYINRPLPKVPRRVSIQSHWLAIEGVQPAIPQNPILLDKPVAKWASKDTLGVMPGA 164 (450)
T ss_pred hHHHHHccCCcceEecChhhcCHHHHhcCcCccCCcCcchhhhhhhhcccCccCCCCCCccccccccccccCccccCcCc
Confidence 99876 4568999999999999999999999999999999999999999999999996422 11100
Q ss_pred cc--cc----ccCCceeeccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHh
Q 009476 148 RS--EY----REDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVT 221 (534)
Q Consensus 148 ~~--~~----k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~ 221 (534)
.+ .| -..+.++++||+++|+||||+|+||++|+.+++++++.+.|.+||+||++|+|||||+|||++||+|+|+
T Consensus 165 ~t~a~q~~n~v~~~~n~E~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit 244 (450)
T COG5095 165 STAAYQARNGVTSMENAELKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQIT 244 (450)
T ss_pred chHHHHHhcCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHH
Confidence 00 01 1234578899999999999999999999999998888888999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCC-cchHHHHHHHHHHHHHHHHhCCCchh
Q 009476 222 RSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD-NHWDLRNFVADLIASICTRFGHVYQN 300 (534)
Q Consensus 222 ~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~-~hw~LRd~AA~lL~~I~~k~~~~y~~ 300 (534)
.|++|+..|..+|.|+.||++|++||++||+||||||+|||+++|++|+.+.+ +|++|||+||.+|..+|++|+++|.+
T Consensus 245 ~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt 324 (450)
T COG5095 245 KNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT 324 (450)
T ss_pred HhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999997744 79999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHH
Q 009476 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQC 380 (534)
Q Consensus 301 L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~ 380 (534)
|+|||+||++|+|+|.+++.+|||||+.||+-||.++||.+|-||+..|...+...+. + .|+..-.|+.+|.++|..
T Consensus 325 LkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle--~-~~e~~~~e~n~~vd~l~d 401 (450)
T COG5095 325 LKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE--K-GNEEEIYENNRVVDLLKD 401 (450)
T ss_pred hchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh--c-cchhhcccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876543 3 466677899999999998
Q ss_pred Hhhhhhhhhhhh
Q 009476 381 AAGLCVYDRLKT 392 (534)
Q Consensus 381 a~g~~~~~~~~~ 392 (534)
|+=..-.|-|..
T Consensus 402 alliL~~d~Lpn 413 (450)
T COG5095 402 ALLILQSDGLPN 413 (450)
T ss_pred HHHHHhccCCCC
Confidence 886665554543
No 3
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=100.00 E-value=1.5e-96 Score=766.48 Aligned_cols=333 Identities=55% Similarity=0.932 Sum_probs=310.7
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCCCccc
Q 009476 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRF 84 (534)
Q Consensus 5 ~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s~~pl~f 84 (534)
|+|+|+.|||++|+++++||+++.||+|+|||+++|+|+|+|||||+||++||++|||.||+++|+||+|||.++++++|
T Consensus 1 ~~~~i~~ia~~~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~~~~~~~~~ 80 (343)
T cd08050 1 PQESIKLIAESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGFSSSEPLPF 80 (343)
T ss_pred ChhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCCCCCccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec-CCCCceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcCCccCcc-------cccccCCc
Q 009476 85 KRA-SGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDAVSDGRR-------SEYREDGI 156 (534)
Q Consensus 85 ~~~-~g~~~ly~~eD~eVdl~~ii~~~LPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~p~~~k~-------~~~k~~~~ 156 (534)
+.. .|++++||++|+||||++++++++|++|+++++++||||||||||.|||||++......+. ........
T Consensus 81 ~~~~~~~~~l~~~~D~eidl~~~i~~~lp~~p~~~~~~~hWLaieGvqP~ip~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd08050 81 RVSTGGGQELYYVEDKEIDLKDLINTPLPKVPLDVSVKAHWLAIEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDE 160 (343)
T ss_pred eeccCCCceEeeCCCCcccHHHhhhcccCCCCCccccccccceecCccCCCCCCCCchhccccccccccccccccccccC
Confidence 554 5678999999999999999999999999999999999999999999999997643221110 01112345
Q ss_pred eeeccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcC-CHHHHHHHHH
Q 009476 157 SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLK-NFSLLFALMR 235 (534)
Q Consensus 157 ~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~-nl~~L~~llr 235 (534)
++.+||.++|+||+|||+||++||++|++ +++..|++||++|++|||||||||||++||+++|++|++ |+..|.++|+
T Consensus 161 ~~~~k~~~~~~LS~Elq~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~ 239 (343)
T cd08050 161 QVLLKPLVRHVLSKELQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMR 239 (343)
T ss_pred cceeeeccccccCHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 67899999999999999999999999997 456688999999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc
Q 009476 236 VARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (534)
Q Consensus 236 mv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 314 (534)
|++||++||+|+||+|+|+|||++|||+|++++|.++ .++||+|||+||++|+.||++|+++|++|++||+++|.|+|+
T Consensus 240 ~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999977 899999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhHHHHHHhhChhhh
Q 009476 315 DPTKSLSQHYGAIQGLAALGPSVV 338 (534)
Q Consensus 315 dp~k~l~t~YGAI~GL~aLG~~aV 338 (534)
||++++++|||||+||++||+++|
T Consensus 320 d~~~~~~~~YGAi~GL~~lG~~~v 343 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSALGPEAV 343 (343)
T ss_pred CCCCCcchhhHHHHHHHHhCccCC
Confidence 999999999999999999999886
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=99.96 E-value=1.4e-30 Score=224.31 Aligned_cols=91 Identities=62% Similarity=1.077 Sum_probs=88.0
Q ss_pred HHHHHhccccCCCCC-CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh
Q 009476 259 VITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 337 (534)
Q Consensus 259 vLTCll~k~l~~~~~-~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~a 337 (534)
||||+|+|++|.++. +|||+|||+||++|+.||++||++|++|++||+++|+++|+||++|+++|||||+||.+||+++
T Consensus 1 vltClv~k~l~~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 1 VLTCLVGKQLGSRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CeEEEeeccccCCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999998775 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcccchHHH
Q 009476 338 VHLLILPNLELY 349 (534)
Q Consensus 338 Vr~lllP~L~~y 349 (534)
||.+|+||++.|
T Consensus 81 vr~~ilP~l~~~ 92 (92)
T PF07571_consen 81 VRALILPNLKAY 92 (92)
T ss_pred HHHhhccCcCCC
Confidence 999999999876
No 5
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=99.92 E-value=1.3e-25 Score=181.95 Aligned_cols=66 Identities=56% Similarity=0.838 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
||+||+|+||++|||+||++|+||+++.||+|||||||+|+|+|.|||+||||++||++|||+|||
T Consensus 1 ~s~~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 1 MSVFSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp -----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCcCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999999999996
No 6
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=99.81 E-value=5.9e-20 Score=148.78 Aligned_cols=65 Identities=58% Similarity=0.841 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.+|+++|+++|++.|++++|||++..|++++|||+++|+|+|+|||+|+||++||++||+.||+
T Consensus 1 ~~~p~~~i~ria~~~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 1 SWLPKETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCCHHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 36899999999999999999999999999999999999999999999999999999999999996
No 7
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=99.46 E-value=2.4e-13 Score=115.69 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=72.1
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCC
Q 009476 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGF 76 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy 76 (534)
..+|+.+|+++|+..|+.++|+++..++.+.++.++.+|+++|++|+.|++|+++|++||..||+..| .|+|||
T Consensus 12 ~gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g-~~~ygf 85 (85)
T cd00076 12 KGITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGY 85 (85)
T ss_pred ccCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCC-CCccCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999 899998
No 8
>PLN00035 histone H4; Provisional
Probab=99.46 E-value=2.9e-13 Score=118.63 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~ 77 (534)
.||..+|+++|+..|+.++|+++..+|.+.+|.++.+|+++|++|++|++|+++|++||..||+..|- |+|||.
T Consensus 29 ~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~-~lyGf~ 102 (103)
T PLN00035 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC-cCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 999996
No 9
>PTZ00015 histone H4; Provisional
Probab=99.41 E-value=7.8e-13 Score=115.90 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCC
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGF 76 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy 76 (534)
.||+.+|+++|+..|+.++|+++..++.+.+|.++.+|+++|++|+.|++|+++|++||..||+..+- |+|||
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~-~~ygf 102 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR-TLYGF 102 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC-CCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 99998
No 10
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=98.89 E-value=3.3e-09 Score=91.49 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
-.+|..+|++|+.+.|..+++.+|...|++.+|..+.+|..+|..++.|+||++++++||..|++.++..
T Consensus 18 ~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 18 LLLPKAPVRRILRKAGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred hhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998763
No 11
>smart00417 H4 Histone H4.
Probab=98.85 E-value=6.1e-09 Score=86.63 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHH
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~A 64 (534)
-+|+.+|+++|...|+.++|+++...+.+-+|.++.+|+.+|++|+.|++|+++|++||..|
T Consensus 13 gI~k~~IrRLaRr~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 13 GITKPAIRRLARRGGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred CCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 48999999999999999999999999999999999999999999999999999999999754
No 12
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.63 E-value=1.5e-07 Score=85.01 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=65.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCC
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASG 79 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s~ 79 (534)
.+.|.+|.++.|+++.++++...|.+.++....+|+++|..|++|++|++++.+||..|++.+.- |.|.++
T Consensus 4 ~~~v~~iLk~~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~---~~f~~~ 74 (117)
T cd07979 4 ARVIAAILKSMGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD---YSFTSP 74 (117)
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999766 666654
No 13
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=98.37 E-value=1.9e-06 Score=72.11 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=62.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
+-+|..|.+..|++..++++.+.|.+-++..+.++.+.+.++|.|++|++.+..||..||+..++
T Consensus 9 ~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 9 RIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 34688999999999999999999999999999999999999999999999999999999999887
No 14
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.22 E-value=2.7e-06 Score=69.94 Aligned_cols=65 Identities=32% Similarity=0.500 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIGVY-----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~-----~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.+|+.+|.+++.+++-. +++.++...|..-+||.+.+|+.+|..+|+|+||++|++.||+.|++.
T Consensus 5 ~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 5 LIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred ccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 36788888888888874 899999999999999999999999999999999999999999999875
No 15
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.12 E-value=1.2e-05 Score=64.69 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
.||...|+.|.+.. +..+++.|+...++...|..+..+..+|...+.+.+|++++.+||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 48999999999999 7788999999999999999999999999999999999999999999986
No 16
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.04 E-value=2.9e-05 Score=64.27 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++++.+..+..++ +-.+++++|...|.+-+|..+.+++.+|.++++|.||++++.+||..||+.
T Consensus 2 ~~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 2 LTKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CcHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5566677766666 446899999999999999999999999999999999999999999999986
No 17
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=97.86 E-value=6.2e-05 Score=64.07 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009476 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~ 77 (534)
+.+-+|+++|.-.|..+++--+-++.-.-....|+.++..|+-+..|+||+++|+.||-.+|+-.+. .+|||.
T Consensus 30 itKpaIRRlARr~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~-~~~g~~ 102 (103)
T KOG3467|consen 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cchHHHHHHHHhcCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc-eeeccC
Confidence 4577899999999999999999999999999999999999999999999999999999999999887 578885
No 18
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=97.76 E-value=0.00017 Score=60.12 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
+-.|..++++.|++..++.+...|++-+..+++++.+.+.+++.|++|+..+..||..||...|+
T Consensus 9 ~~~va~il~~~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 9 RRSVAQILKHAGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 34688899999999999999999999999999999999999999999999999999999999877
No 19
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=97.64 E-value=0.00016 Score=65.35 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++... .+..+++++++..|+.-+||...||++.|.+.+++.||+++|++||+.|++.
T Consensus 20 ~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n 85 (115)
T cd00074 20 QFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN 85 (115)
T ss_pred cCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence 5899999999997 8889999999999999999999999999999999999999999999999976
No 20
>smart00428 H3 Histone H3.
Probab=97.56 E-value=0.00029 Score=62.63 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=56.0
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 8 ~V~~iAes~Gi---~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
-|+.|++...- -+.+++|..+|.+.+|..+-++.++|..++.|+||.+|++.||..|.+.++.
T Consensus 38 LVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir~~ 103 (105)
T smart00428 38 LVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGE 103 (105)
T ss_pred HHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHhcc
Confidence 46777777631 2799999999999999999999999999999999999999999999988764
No 21
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=97.14 E-value=0.0016 Score=59.98 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
..|..|.+++||+...+.+...|-+.+--+..+|+++|.-++.|++|+.++.+||..|+..+
T Consensus 16 ~~i~~iL~~~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 16 RVIHLILKSMGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 46889999999999999999999999977799999999999999999999999999999986
No 22
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.95 E-value=0.0039 Score=52.47 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVY---NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~---~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+|..|+|..+.. ++++++...|++-+-..+..+..+---|++|+||++++++||....|
T Consensus 10 ~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 10 TVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 567788887544 49999999999999999999999999999999999999999987665
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.76 E-value=0.0042 Score=54.36 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 009476 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (534)
Q Consensus 230 L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 309 (534)
|..+-.++.||-.. ++.|+..|+|+||.|+ .|++|++|.+|...|..|++-+....-.--..|...|
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~---------~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCF---------DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665 9999999999999995 6899999999999999999987654433456788888
Q ss_pred HHHhcCCCCC
Q 009476 310 LHAFLDPTKS 319 (534)
Q Consensus 310 ~k~lldp~k~ 319 (534)
.|.+.|++.+
T Consensus 74 ~kl~~D~d~~ 83 (97)
T PF12755_consen 74 CKLSADPDEN 83 (97)
T ss_pred HHHHcCCchh
Confidence 9998888765
No 24
>PLN00160 histone H3; Provisional
Probab=96.24 E-value=0.015 Score=51.14 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=55.2
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 8 TIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 8 ~V~~iAes~G--i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
-|+.|++... --+...++..+|-+..|..+-.+.++|..++.|+||-+|++.|+..|.+.++.
T Consensus 30 LVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 94 (97)
T PLN00160 30 LVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRIRGQ 94 (97)
T ss_pred HHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHhhcc
Confidence 4677777653 13688899999999999999999999999999999999999999999988753
No 25
>PLN00121 histone H3; Provisional
Probab=96.18 E-value=0.015 Score=54.11 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=55.3
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 8 TIEVIAQSI--GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 8 ~V~~iAes~--Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
-|+.|++.. ++ +...++..+|-+..|.+|-.+.++|..++.|+||-+|++.|+..|.+.++.
T Consensus 71 LVREI~~~~~~~~-Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 134 (136)
T PLN00121 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_pred HHHHHHHHhCccc-eeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccc
Confidence 466777775 33 688899999999999999999999999999999999999999999988765
No 26
>PTZ00018 histone H3; Provisional
Probab=96.17 E-value=0.014 Score=54.18 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=55.7
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 8 TIEVIAQSI--GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 8 ~V~~iAes~--Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
-|+.|++.. ++ +...++..+|-+..|.+|-.+.+++..++.|+||-+|++.|+..|.+.++.+
T Consensus 71 LVREI~~~~~~~~-rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred HHHHHHHHcCCcc-eeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 466777664 34 6889999999999999999999999999999999999999999999888754
No 27
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.13 E-value=0.021 Score=53.29 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
-|..|..++||..-.+-+...|-+..=-+...|+++|.=|.+|+|+..+.++||..|+.++..
T Consensus 18 ~i~~iL~s~GI~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~ 80 (148)
T KOG3334|consen 18 VIASILKSLGIQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVD 80 (148)
T ss_pred HHHHHHHHcCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhc
Confidence 477888999999999999998887776679999999999999999999999999999999765
No 28
>PLN00161 histone H3; Provisional
Probab=96.12 E-value=0.024 Score=52.53 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=58.2
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCc
Q 009476 8 TIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (534)
Q Consensus 8 ~V~~iAes~G--i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPL 73 (534)
-|+.|++... --+...++..+|-+..|.+|-++.++|.-++.|+||-+|.+.||..|.+.++..+-
T Consensus 64 LVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~~~ 131 (135)
T PLN00161 64 LVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPIYG 131 (135)
T ss_pred HHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccccc
Confidence 4777887763 13788999999999999999999999999999999999999999999999987643
No 29
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=95.71 E-value=0.044 Score=51.83 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
.+|.+.|.+|.+..== ..+++||.+.+-+.|...|.-|.-||..-..+-|||++|.+||=-|+..++.|
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 4789999999887522 25999999999999999999999999999999999999999999999998875
No 30
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=95.69 E-value=0.06 Score=46.24 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CccCHhhHHHHHhcc
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR---TVLTANDVDSALNLR 68 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR---~kLt~~DIn~AL~~~ 68 (534)
-+++..||.+..++-=..++++++..++--....+-||+++|.+.|.+... +-|.++||..|.+.+
T Consensus 16 ~f~k~~iKr~~~~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 16 SFPKAAIKRLIQSVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred hccHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 488999999988776689999999999999999999999999999999776 789999999998864
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.49 E-value=0.15 Score=49.79 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHhhhcCCcc---ccchhHHHHHH---HHHhhhcCCH--HHHHHHHHHHHHhhcCCCcccccchhhhHHHH
Q 009476 188 NSTVFKQALLSLAMDSGLH---PLVPYFTYFIS---EEVTRSLKNF--SLLFALMRVARSLLRNPHIHIEPYLHQMMPSV 259 (534)
Q Consensus 188 ~~~~r~~AL~sL~tD~gL~---qLLPYfv~FI~---e~V~~nl~nl--~~L~~llrmv~ALl~Np~L~IepYLHqLlPsv 259 (534)
+=..|.+||..|+.--.-+ ...+-|+..+. ..+...+.|+ ......+.++..|..+-.-.+++|+..++|++
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3345667776655442222 33444444444 5565666543 33344455566666555556999999999999
Q ss_pred HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHH-HHHHHHHhcCCCCCchhhhhHHHHHHhh----C
Q 009476 260 ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-TRTLLHAFLDPTKSLSQHYGAIQGLAAL----G 334 (534)
Q Consensus 260 LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI-~~tL~k~lldp~k~l~t~YGAI~GL~aL----G 334 (534)
+.++-.+ .=-+|+.|...|..||..++ ..+++ ...+...+. +++.....+++..|..+ |
T Consensus 100 l~~~~~~---------~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 100 LKKLGDS---------KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHGGG------------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHccc---------cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcc
Confidence 8886332 12699999999999999766 22466 444555543 66777777777665543 3
Q ss_pred --hhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 009476 335 --PSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 388 (534)
Q Consensus 335 --~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~ 388 (534)
...+.. -..++.+.+.|...+.+ .+..+|..|.+++..+....|..-..
T Consensus 164 ~~~~~l~~--~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 164 SDSSVLQK--SAFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp ---GGG----HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred chHhhhcc--cchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 111111 01234555555555543 46778999999999998888776433
No 32
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=94.39 E-value=0.096 Score=57.02 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhh
Q 009476 3 IVPKETIEVIAQSI------GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60 (534)
Q Consensus 3 ~~~~e~V~~iAes~------Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~D 60 (534)
-+|...||.+|... +-.+|+.++.++|-+..+++..|+..+---|+.|+|||++..+|
T Consensus 351 ~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 351 SLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp -S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 37889999999888 55689999999999999999999999999999999999999887
No 33
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=94.37 E-value=0.22 Score=41.05 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 7 ETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 7 e~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
..+..+.++++- ..+++++...|.+-++..+..++..|.+.++|-+-.+|...||...|+-
T Consensus 3 ~~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 3 RKLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 445555555543 3589999999999999999999999999999999999999999999874
No 34
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.34 E-value=0.1 Score=47.64 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCH---hhHHHHHhcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTA---NDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~---~DIn~AL~~~ 68 (534)
-|-.|..|+||+..++.+-..|-+..--+-.+++++|.-|+.|++|...++ +||..|+..+
T Consensus 19 lihliL~Slgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 19 LIHLILRSLGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred HHHHHHHhcCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 466789999999999999999988888889999999999999999987665 9999999764
No 35
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.27 E-value=0.12 Score=52.68 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=60.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc-cCCCCccCCCCCCCccceec
Q 009476 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL-RNVEPIYGFASGDSLRFKRA 87 (534)
Q Consensus 16 ~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~-~nvEPLyGy~s~~pl~f~~~ 87 (534)
-|-+.|++||...|.+..+.++..|+.-|.++++|-|..+|-+-||..+|+- .|++. -||++.+.-.|+++
T Consensus 168 d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~i-Pgf~sd~~~~~~k~ 239 (258)
T KOG1142|consen 168 DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEI-PGFSSDEKRSKKKA 239 (258)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccC-CCcccccccccccc
Confidence 5666799999999999999999999999999999999999999999999987 78863 47777554445554
No 36
>smart00414 H2A Histone 2A.
Probab=93.29 E-value=0.26 Score=44.08 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||-.-|.++-+.-. ..+++..++-.||.-+||-..||++-|...++..|++++|+.||+.|++.
T Consensus 9 ~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~n 74 (106)
T smart00414 9 QFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRN 74 (106)
T ss_pred cCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccC
Confidence 356666777776542 45899999999999999999999999999999999999999999999865
No 37
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=92.94 E-value=0.29 Score=50.89 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC--CccCCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE--PIYGFA 77 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE--PLyGy~ 77 (534)
-|..+..+.|+..+++.+.+.|.+-+.-.|++|..++..+..|++|+.-|..||...|...|+. -||-|-
T Consensus 10 VV~~Ll~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~~ 81 (323)
T KOG4336|consen 10 VVSNLLKTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAYF 81 (323)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHHH
Confidence 3566788999999999999999999999999999999999999999999999999999998873 455443
No 38
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=92.89 E-value=0.41 Score=45.81 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCc
Q 009476 3 IVPKETIEVIAQSIGVY---NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~---~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPL 73 (534)
.+|.+.|.++++.+==+ .++.||..++++-..-++.-+.--|-.|++..+|++++++||=.||+-.+.+-+
T Consensus 10 ~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f 83 (172)
T KOG0870|consen 10 NLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSF 83 (172)
T ss_pred hccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHH
Confidence 47899999888765322 488999999999999999999999999999999999999999999998766433
No 39
>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]
Probab=92.82 E-value=0.28 Score=51.82 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 5 ~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
-...|.-|++++|...+.+-+...|...+..+|.++...|..|+.+.+|.--..-||-.||..+...
T Consensus 31 a~~avaQIcqslg~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~dls~s 97 (353)
T KOG2389|consen 31 ARVAVAQICQSLGYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQDLSAS 97 (353)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHHhhhh
Confidence 4567999999999999999999999999999999999999999999999999999999999998764
No 40
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=92.53 E-value=0.26 Score=44.66 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 2 SIVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 2 s~~~~e~V~~iAe-s~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.+|.--|+++.+ .-+-.+++.+++-.|+..+||-+.||++-|...++--|.+++++.+++.|++
T Consensus 25 l~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 25 LIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred ccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 3578888999988 5666789999999999999999999999999999999999999999999985
No 41
>PLN00154 histone H2A; Provisional
Probab=92.47 E-value=0.42 Score=44.49 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~G--i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||-.-|.++-+.-. ..+++..+.-.||.-+||-.-||++-|...++..|++++|+.||..|++.
T Consensus 38 ~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 38 QFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred cCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 467777888888764 56999999999999999999999999999999999999999999999865
No 42
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=92.10 E-value=0.64 Score=40.47 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCHhhHHHHHhc
Q 009476 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT-VLTANDVDSALNL 67 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~-kLt~~DIn~AL~~ 67 (534)
|-+++..||.+..++== ..+++.++..++.-....+-|||++|...+..-.-+ -|++.|+..|.+-
T Consensus 22 s~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 22 SSFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp ----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 45889999988877543 589999999999999999999999999999965544 7999999999764
No 43
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.94 E-value=0.32 Score=33.42 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=24.7
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH
Q 009476 255 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 293 (534)
Q Consensus 255 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 293 (534)
|+|.++.++ .|.+|..|+.|+..|+.|++.
T Consensus 1 llp~l~~~l---------~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL---------NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH---------T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc---------CCCCHHHHHHHHHHHHHHHhh
Confidence 578888775 478999999999999999874
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=1 Score=51.59 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=132.2
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCC
Q 009476 194 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFS 273 (534)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~ 273 (534)
+||.-|++==| ++++|-+.-++.+.+.+ .++..-..-+-.+-|+..-=.=.+-|||..|+|-++.|+=.|.---+ .
T Consensus 377 AaLDVLanvf~-~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR-s 452 (885)
T KOG2023|consen 377 AALDVLANVFG-DELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR-S 452 (885)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee-e
Confidence 45555544322 67788887777777665 34444333333444444433346778999999999999977643222 3
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 353 (534)
-..|.|-+||--++..= .+.-++| ++.-|++.++|.+| -.+-.|..+++-|-.+|-.. ++|+|..++..|
T Consensus 453 ITCWTLsRys~wv~~~~------~~~~f~p-vL~~ll~~llD~NK--~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l 522 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDS------RDEYFKP-VLEGLLRRLLDSNK--KVQEAACSAFATLEEEAGEE-LVPYLEYILDQL 522 (885)
T ss_pred eeeeeHhhhhhhHhcCC------hHhhhHH-HHHHHHHHHhcccH--HHHHHHHHHHHHHHHhccch-hHHHHHHHHHHH
Confidence 56899999887665432 2233444 44445566676555 45567788888888888776 789999999999
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcccccc
Q 009476 354 EPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWE 404 (534)
Q Consensus 354 e~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~~~~~~~~~~~~ 404 (534)
......+..+|-.+-+|| .|+|-..||--+.+..-.-+..||.-..|.
T Consensus 523 ~~af~kYQ~KNLlILYDA---IgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 523 VFAFGKYQKKNLLILYDA---IGTLADSVGHALNKPAYIQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHhhcceehHHHH---HHHHHHHHHHhcCcHHHHHHhccHHHHHHH
Confidence 998888877777776676 467777788888877766678899888886
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=3.1 Score=47.79 Aligned_cols=120 Identities=19% Similarity=0.316 Sum_probs=80.5
Q ss_pred HHHHHHHhhcCCCc--ccccchhhhHHHHHHHHhcccc-----CCC--------------------------C------C
Q 009476 233 LMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRL-----GNR--------------------------F------S 273 (534)
Q Consensus 233 llrmv~ALl~Np~L--~IepYLHqLlPsvLTCll~k~l-----~~~--------------------------~------~ 273 (534)
--.+-.|+..+|-. -+.|||.+|+|.++.-++.... ++. . .
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 44566788999933 5799999999999987665321 100 0 0
Q ss_pred C----------cchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcc
Q 009476 274 D----------NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL 343 (534)
Q Consensus 274 ~----------~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lll 343 (534)
+ ..|.||..+|..|.-+.+-||. .+-+.++=.|++.|.. .....+-.+|.+|.|+-.- .-..++
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEG-cM~g~~ 429 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEG-CMQGFV 429 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHH-Hhhhcc
Confidence 1 2499999999999999999985 6677777777777763 3444455555555555322 233578
Q ss_pred cchHHHHHhhhhhhh
Q 009476 344 PNLELYLKFLEPEML 358 (534)
Q Consensus 344 P~L~~y~~~Le~~l~ 358 (534)
|+|+.+...|-+-|.
T Consensus 430 p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLD 444 (885)
T ss_pred cchHHHHHHHHHHhc
Confidence 888877766655543
No 46
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=91.30 E-value=0.5 Score=43.43 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 3 IVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 3 ~~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.+|.--|.++.+. -.+.+++-++.-.||.-+||-.-||++-|-++++-.+++++|+.+|+.|++
T Consensus 27 ~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 27 QFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred ccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 4666666666665 556788889999999999999999999999999999999999999999986
No 47
>smart00427 H2B Histone H2B.
Probab=91.22 E-value=0.58 Score=40.64 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 20 NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 20 ~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
.++..+...+...|..-...|..||.++++..||++||..+|..|.++.
T Consensus 19 giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 19 GISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 3677888888889999999999999999999999999999999999874
No 48
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.88 E-value=11 Score=40.76 Aligned_cols=192 Identities=18% Similarity=0.165 Sum_probs=111.7
Q ss_pred HHHHHhhhcCCc-cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC----C-Ccccccchhh-hHHHHHHHHhcc
Q 009476 194 QALLSLAMDSGL-HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN----P-HIHIEPYLHQ-MMPSVITCLVSK 266 (534)
Q Consensus 194 ~AL~sL~tD~gL-~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N----p-~L~IepYLHq-LlPsvLTCll~k 266 (534)
++|..+.+++.+ ..++|+++.-+........ +......+++.+..++.+ . +...+-|.|. ++|.++..++..
T Consensus 24 ~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~ 102 (415)
T PF12460_consen 24 EALAALSTSPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQA 102 (415)
T ss_pred HHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhh
Confidence 466677777764 5566655555444332221 444444444444444433 4 5677899997 888888887776
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc----------CCCCCchhhhhHHHHHHhhChh
Q 009476 267 RLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----------DPTKSLSQHYGAIQGLAALGPS 336 (534)
Q Consensus 267 ~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll----------dp~k~l~t~YGAI~GL~aLG~~ 336 (534)
...... .++.+=+.+++++..|++..+ ..-|..+.+.+...|+ +...........+.-+.++=..
T Consensus 103 ~~~~~~--~~~~~L~~~~~l~~~iv~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 177 (415)
T PF12460_consen 103 SDQSSD--LDDRVLELLSRLINLIVRSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCS 177 (415)
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHc
Confidence 543321 567888999999999999877 4677888888888887 1111001111222212221111
Q ss_pred hhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHH--hhhhhhhhhhhh
Q 009476 337 VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA--AGLCVYDRLKTV 393 (534)
Q Consensus 337 aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a--~g~~~~~~~~~~ 393 (534)
.=+.+.+|....+.+.+....... .+...|.-+.++..+|++= -|..+.+.+..+
T Consensus 178 l~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~ 234 (415)
T PF12460_consen 178 LRKDVSLPDLEELLQSLLNLALSS--EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSL 234 (415)
T ss_pred CCcccCccCHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Confidence 224456777777777666554322 2355666777788777775 344444444444
No 49
>PTZ00017 histone H2A; Provisional
Probab=90.62 E-value=0.61 Score=43.41 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
||..-|.++...- -..+++..+.-.||.-+||-..||++-|...++..|++++|+.||+.|++.
T Consensus 28 FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~n 92 (134)
T PTZ00017 28 FPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRN 92 (134)
T ss_pred cchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccC
Confidence 5656666666542 345889999999999999999999999999999999999999999999864
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=5.6 Score=48.00 Aligned_cols=254 Identities=15% Similarity=0.121 Sum_probs=148.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHH--HHHHHHHHHHhhcCCCcccccc
Q 009476 174 LYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSL--LFALMRVARSLLRNPHIHIEPY 251 (534)
Q Consensus 174 ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~--L~~llrmv~ALl~Np~L~IepY 251 (534)
..|+.+...++..++. .|++|=+.|++..+=++++|-|.+..+..=....+.+.. +++++--.+ +.|. .--
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w-----~~l~-~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHW-----SRLS-AEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh-----hcCC-HHH
Confidence 4566666667766555 588999999999998889999987665322111111111 112211111 1111 122
Q ss_pred hhhhHHHHHHHHhccc-------cCC-------CCC----------------CcchHHHHHHHHHHHHHHHHhCCCchhh
Q 009476 252 LHQMMPSVITCLVSKR-------LGN-------RFS----------------DNHWDLRNFVADLIASICTRFGHVYQNL 301 (534)
Q Consensus 252 LHqLlPsvLTCll~k~-------l~~-------~~~----------------~~hw~LRd~AA~lL~~I~~k~~~~y~~L 301 (534)
-.+|-.++|.|++.-. +|. +.. ..+-.+|+-|=.+|..+-..||+.....
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 3466667777766521 110 001 1234899999999999999999987766
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-----hhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHH
Q 009476 302 QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-----SVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYG 376 (534)
Q Consensus 302 ~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-----~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~ 376 (534)
-.-+.+.|.+.+.||..+ .+.-|+.++.++-. .+.+...-+-|+..+..+...+.. .+...-.++..+..
T Consensus 157 ~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~---~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD---GDDDAAKSALEALI 231 (1075)
T ss_pred HHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---cchHHHHHHHHHHH
Confidence 668999999999999988 55666666666532 233333344444444444444432 12222346778888
Q ss_pred HHHHHhhhhhhhhhhhhhc-------CCCccccccccC-----cccccCCCCccCccccccC--CCCcccccccCCCC
Q 009476 377 ALQCAAGLCVYDRLKTVLL-------RPPKQSRWESNR-----KGMIVFPSKRKASMDNLML--QPPVKKMATLGPMG 440 (534)
Q Consensus 377 all~a~g~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 440 (534)
-|+...+.++...+...+. +--..-.||..+ ..+-.-|.++|.+.+ +-+ .|.+=++.|++..+
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccc
Confidence 8888899998888876632 222333333221 111124555555544 322 45666777777665
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.61 E-value=0.16 Score=38.87 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009476 277 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (534)
Q Consensus 277 w~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 333 (534)
|.+|.-|+..|+.++...+.......+.++..|...|.|++. ...-.|..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 899999999999988766666667888999999999988665 6688888887654
No 52
>PTZ00463 histone H2B; Provisional
Probab=89.61 E-value=1.1 Score=40.72 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 21 lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
+|..+...+...|..-...|..||.++++..+|.+||..||..|.+++
T Consensus 47 IS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 47 ISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 578888888889999999999999999999999999999999999874
No 53
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=89.45 E-value=16 Score=41.66 Aligned_cols=208 Identities=17% Similarity=0.171 Sum_probs=125.3
Q ss_pred CcHHHHHHHHHHHHHhhcCCChHHHHH---HHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHH-HHHHHHHHHhhcC
Q 009476 168 LSKELQLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLL-FALMRVARSLLRN 243 (534)
Q Consensus 168 LSkElQ~Yf~kIt~a~l~~~~~~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L-~~llrmv~ALl~N 243 (534)
.+.+...||..+.+++-+......|.. |.+.+...-| ..-=||++.++-.-+++--+..... ..-...++|++..
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh
Confidence 456667799999999865444433322 5577777777 6666777777765444332221111 2233444444433
Q ss_pred --------------------------------------CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 244 --------------------------------------PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 244 --------------------------------------p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
-...++.++..++|.+... ..|.|=.+|+-+-.
T Consensus 247 ~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev---------l~DT~~evr~a~~~ 317 (569)
T KOG1242|consen 247 LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV---------LWDTKPEVRKAGIE 317 (569)
T ss_pred cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH---------HccCCHHHHHHHHH
Confidence 2333333333333321111 13668899999999
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCC-Cch------------------------------------hhhhHHH
Q 009476 286 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK-SLS------------------------------------QHYGAIQ 328 (534)
Q Consensus 286 lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k-~l~------------------------------------t~YGAI~ 328 (534)
+|-.+|..-.+ +. -.++..+|+.++.||++ ... ++=+++.
T Consensus 318 ~l~~~~svidN--~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~ 394 (569)
T KOG1242|consen 318 TLLKFGSVIDN--PD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAI 394 (569)
T ss_pred HHHHHHHhhcc--HH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHH
Confidence 99999987665 33 45788999999999983 222 1323333
Q ss_pred HHHhhChhh-hHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 009476 329 GLAALGPSV-VHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLK 391 (534)
Q Consensus 329 GL~aLG~~a-Vr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~ 391 (534)
-.-.|-..+ =...+-|.|+.+...|+..+... ...+|..|.|.+|+++..+|.-..+.+.
T Consensus 395 IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f~d~~ 455 (569)
T KOG1242|consen 395 IIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSFDDLI 455 (569)
T ss_pred HHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 333332222 13346677777777777666432 4568999999999999999988665443
No 54
>PLN00158 histone H2B; Provisional
Probab=88.92 E-value=1.2 Score=40.41 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 21 lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
++..+...+...|..-...|..||.++++..+|.+||..||..|.++.
T Consensus 46 IS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 46 ISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 477888888889999999999999999999999999999999999874
No 55
>PLN00156 histone H2AX; Provisional
Probab=88.83 E-value=0.67 Score=43.33 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
||---|.++...- -..+++..+.-.||.-+||-..||++-|..-++..|++++|+.+|..|++.
T Consensus 30 FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrn 94 (139)
T PLN00156 30 FPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
T ss_pred cchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccC
Confidence 4544455555442 234788899999999999999999999999999999999999999999854
No 56
>PLN00157 histone H2A; Provisional
Probab=88.77 E-value=0.88 Score=42.25 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
||---|.+.-.. --..+++..+.-.||.-+||-..||++-|..-++..|++++|+.||..|++.
T Consensus 27 FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 91 (132)
T PLN00157 27 FPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN 91 (132)
T ss_pred cchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence 444455555544 1234788899999999999999999999999999999999999999999854
No 57
>PLN00153 histone H2A; Provisional
Probab=87.78 E-value=1.2 Score=41.22 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=51.8
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
||---|.+.-.. --..+++..+.-.||.-+||-..||++-|..-++..|++++|+.+|+.|++.
T Consensus 25 FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 89 (129)
T PLN00153 25 FPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRN 89 (129)
T ss_pred cchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccC
Confidence 343444444432 2234788889999999999999999999999999999999999999999854
No 58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.26 E-value=6.4 Score=44.57 Aligned_cols=148 Identities=18% Similarity=0.275 Sum_probs=97.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009476 176 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (534)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqL 255 (534)
.++++.-++...+....++.++.|.+| |+. .-..|.+ -..|+-+.-++.||-.+. .+|+.++
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d------------~a~-s~~~n~r-kGgLiGlAA~~iaLg~~~----~~Y~~~i 85 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGD------------YAY-SPHANMR-KGGLIGLAAVAIALGIKD----AGYLEKI 85 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHH------------hcc-Ccccccc-cchHHHHHHHHHHhcccc----HHHHHHh
Confidence 345555565555555555566655555 111 1111111 244666666666665443 3499999
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 256 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
+|++++|. .|..-.+|-||..-|-.|++-+-.....--.-|...+.|...|++.+ +.|-++|..
T Consensus 86 v~Pv~~cf---------~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~-------V~~~aeLLd 149 (675)
T KOG0212|consen 86 VPPVLNCF---------SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN-------VRGGAELLD 149 (675)
T ss_pred hHHHHHhc---------cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc-------cccHHHHHH
Confidence 99999995 34455899999999999999887777777889999999999988754 445666777
Q ss_pred hhhHhhccc-----chHHHHHhhhhhh
Q 009476 336 SVVHLLILP-----NLELYLKFLEPEM 357 (534)
Q Consensus 336 ~aVr~lllP-----~L~~y~~~Le~~l 357 (534)
.-++..+.+ +|+.+...|..++
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eri 176 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERI 176 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHH
Confidence 767666665 3455555555554
No 59
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=87.13 E-value=0.7 Score=40.22 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 19 YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 19 ~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.+-.+|.+..+-+-|...|.+++++|.+++.+.+|++++++|+-.+||-
T Consensus 18 ~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 18 EEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 3566799999999999999999999999999999999999999999874
No 60
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=87.05 E-value=0.37 Score=44.85 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 21 lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
....|..+|-|.+|.+|-.+.+++..++.|+||-++.+.||..|.+.++-
T Consensus 86 fqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~ 135 (137)
T KOG1745|consen 86 FQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 135 (137)
T ss_pred ehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccC
Confidence 45688999999999999999999999999999999999999999987653
No 61
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=86.73 E-value=36 Score=38.88 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=94.4
Q ss_pred HHHHHHHHhhcCCCh-HHHH--HHHHHhhhcCCccccchhHHHHHHHH--HhhhcCCHHHHHHHHHHHHHhhcCCCcccc
Q 009476 175 YFDKIRELTVSRSNS-TVFK--QALLSLAMDSGLHPLVPYFTYFISEE--VTRSLKNFSLLFALMRVARSLLRNPHIHIE 249 (534)
Q Consensus 175 Yf~kIt~a~l~~~~~-~~r~--~AL~sL~tD~gL~qLLPYfv~FI~e~--V~~nl~nl~~L~~llrmv~ALl~Np~L~Ie 249 (534)
+|.+.+.-+++...- .++. -++..+-++.++..+-|+-+ +..- -..+.++...-...+....++..|=+-.-|
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~--l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E 211 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF--LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE 211 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH--HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC
Confidence 555555555543222 2222 26789999999999999853 3221 112222222222455666788888888999
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHH
Q 009476 250 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQG 329 (534)
Q Consensus 250 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~G 329 (534)
||+-.++|.+++|.= +..=.+|+-|......|.+.+.. ..++-.+...+...+.+ ...+.=+++-+
T Consensus 212 Pyiv~~lp~il~~~~---------d~~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~---kWrtK~aslel 277 (569)
T KOG1242|consen 212 PYIVPILPSILTNFG---------DKINKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEA---KWRTKMASLEL 277 (569)
T ss_pred chHHhhHHHHHHHhh---------ccchhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHH---hhhhHHHHHHH
Confidence 999999999999962 22237899999998888887654 35555555555444432 67777888888
Q ss_pred HHhhCh
Q 009476 330 LAALGP 335 (534)
Q Consensus 330 L~aLG~ 335 (534)
|.+|+.
T Consensus 278 lg~m~~ 283 (569)
T KOG1242|consen 278 LGAMAD 283 (569)
T ss_pred HHHHHH
Confidence 887764
No 62
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=86.73 E-value=7.3 Score=42.18 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhhc----CC--HHHHHHHHHHHHHhhcC----CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHH
Q 009476 212 FTYFISEEVTRSL----KN--FSLLFALMRVARSLLRN----PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 281 (534)
Q Consensus 212 fv~FI~e~V~~nl----~n--l~~L~~llrmv~ALl~N----p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd 281 (534)
|.+||-+.+..|. .+ -+.+..++.++.-|+.. +.=.+.--+..++|++|-|++-- +++-..|.
T Consensus 204 l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v-------~e~~~~k~ 276 (373)
T PF14911_consen 204 LRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV-------NEEPQVKK 276 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc-------CCCcchhH
Confidence 4566666666653 11 24455666666666666 44455555677899999998652 45668899
Q ss_pred HHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhh
Q 009476 282 FVADLIASICTRFG-HVYQNLQSRVTRTLLHAFLDPT-KSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPE 356 (534)
Q Consensus 282 ~AA~lL~~I~~k~~-~~y~~L~~RI~~tL~k~lldp~-k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~ 356 (534)
.|-.++..|++.+. .+....+...+..+.....+-- ..-...|+-+.-++.+-++.|.. ++|.++.-...-|..
T Consensus 277 ~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~-Lip~i~q~l~~~E~k 352 (373)
T PF14911_consen 277 LATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVIS-LIPTIRQSLKDSERK 352 (373)
T ss_pred HHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999998765 4455555555555544432211 12234567888899999999987 678777766554443
No 63
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=85.64 E-value=2.5 Score=36.81 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=49.0
Q ss_pred HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 9 IEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~Gi~-~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
|+.+.=..|=. +-.+|.+..|-+-|...+.+++.+|..++. ++|.+++++|+-.++|-
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~ 66 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRK 66 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhc
Confidence 66666666654 445689999999999999999999999999 88899999999999964
No 64
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=84.44 E-value=2.6 Score=43.58 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHHh
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrh--skR~kLt~~DIn~AL~ 66 (534)
..+|+..|+..|+ .+++++++.|++.+...+..+.+|.-|+.-. +++.++|.+||+..+.
T Consensus 136 ~~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 136 KQLVERTAQELGV-KLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc
Confidence 3678999999999 5999999999999999999999999999988 5688999999998774
No 65
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=84.31 E-value=0.92 Score=46.35 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------CHhhHHHHHhccCC
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVL------TANDVDSALNLRNV 70 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kL------t~~DIn~AL~~~nv 70 (534)
..|..|+...|+..+++|+...|+..+|.|||.||..++..++|-.+.-- ..+||...|+.++.
T Consensus 51 ~~i~~i~~~~g~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~~~~~~~~~~sdv~~qlr~l~~ 120 (264)
T PF05236_consen 51 KRIQKIAKKHGLKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSSKSDPRYEIRSDVRKQLRFLEQ 120 (264)
T ss_dssp HHHHHHHHCTT--EE-TCHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccchHHHHHHHHHHH
Confidence 46788999999989999999999999999999999999999999766533 36677777766543
No 66
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=84.05 E-value=17 Score=43.53 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=88.9
Q ss_pred ccccchhHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHH
Q 009476 205 LHPLVPYFTYFISEEVTRSLK-----NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 279 (534)
Q Consensus 205 L~qLLPYfv~FI~e~V~~nl~-----nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 279 (534)
+|+++|-++.-+.-.|..+.- -+-.+..+.+++|-|-.|..+.-.||+|.++-+.+.-+-+ .+..-..
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a-------~d~DqeV 586 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA-------TDSDQEV 586 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc-------ccccHHH
Confidence 566666666555555544421 2445566788888888888899999999766655444322 3556799
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHH
Q 009476 280 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYL 350 (534)
Q Consensus 280 Rd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~ 350 (534)
|+.|-.+++.++-.||....+=-+|+.-.|.+-+. .-.|+--|+.+|.-+---..+.-+.|++..++
T Consensus 587 keraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il 653 (1233)
T KOG1824|consen 587 KERAISCMGQIIANFGDFLGNELPRTLPILLERLG----NEITRLTAVKALTLIAMSPLDIDLSPVLTEIL 653 (1233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh----chhHHHHHHHHHHHHHhccceeehhhhHHHHH
Confidence 99999999999999997766666777777766664 44556667776665433333333334443333
No 67
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=82.93 E-value=1.7 Score=36.31 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCHhhHHHHHh
Q 009476 5 PKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTV-LTANDVDSALN 66 (534)
Q Consensus 5 ~~e~V~~iAes~Gi----~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~k-Lt~~DIn~AL~ 66 (534)
|+++|.++.+ ... ++++.++.+..++.++-.++|.+.-|..-++..+... +..+|++..+-
T Consensus 1 p~~li~rll~-~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 1 PPELIARLLH-EHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp -CHHHHHHHC-TTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred ChHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6788888877 444 3688999999999999999999999999999999998 99999998764
No 68
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=82.45 E-value=4.5 Score=40.08 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------ccCHhhHHHHHhccC
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT------VLTANDVDSALNLRN 69 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~------kLt~~DIn~AL~~~n 69 (534)
..|..|+..-|+..+++|+...|+..+|.|++.|++..+.+.+|-... ....+|+...|+.+|
T Consensus 52 ~~~~~i~~~~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~~~~~~~r~~~~sdvr~qL~~l~ 120 (212)
T cd08045 52 KKIRKIAKKHGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHRVDSEKEDERYEITSDVRKQLRFLE 120 (212)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceeecchHHHHHHHHH
Confidence 568899999999999999999999999999999999999999997443 233444555444433
No 69
>PTZ00252 histone H2A; Provisional
Probab=82.21 E-value=4.1 Score=37.93 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrlreIiqeA~Kfmrh--skR~kLt~~DIn~AL~~ 67 (534)
||---|.+.-..-. ..+++..++-.||.-+||-..||++-|.+-++. .|++++|+.+|..|++.
T Consensus 26 FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrN 92 (134)
T PTZ00252 26 FPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRH 92 (134)
T ss_pred CchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccC
Confidence 44444444443322 347888999999999999999999999999976 68899999999999854
No 70
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=81.91 E-value=3.3 Score=43.27 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=54.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHHhc
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNL 67 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhsk-R~kLt~~DIn~AL~~ 67 (534)
..+|+..|+..|+ .+++++++.|++.+...+..+.+|--|+.--+. .+++|.+||+..+-.
T Consensus 148 ~~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 148 ARLIDDELAEAGL-RITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 3568999999999 599999999999999999999999999998854 568999999988743
No 71
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=81.62 E-value=4 Score=41.27 Aligned_cols=60 Identities=27% Similarity=0.226 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
..|+..++..|+ ++++++++.|++.+...++.+.++.-|+.--++-+.+|.+||+..+..
T Consensus 118 ~~i~~~~~~~g~-~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 118 RWIQARLKKLGL-RIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 368889999999 699999999999999999999999999988876668999999998843
No 72
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=81.52 E-value=3.9 Score=42.17 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
..|+..+++.|+ ++++++++.|++.+...+..+.+|.-|+.--++-+++|.+||+..+..
T Consensus 153 ~~i~~~~~~~g~-~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~ 212 (340)
T PRK05574 153 QWIQQRLKQQGL-QIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPD 212 (340)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh
Confidence 568889999999 699999999999999999999999999988764333999999998754
No 73
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=81.01 E-value=8.8 Score=36.38 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 4 VPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
+|++||.-|..++== -++..|+-..|-..--+.|.-|-.+|-+.+....++++.++||-.||+.++.
T Consensus 13 LPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF 81 (156)
T KOG0871|consen 13 LPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGF 81 (156)
T ss_pred CcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcch
Confidence 899999888776522 2577888888888888999999999999999999999999999999998654
No 74
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=80.31 E-value=4.6 Score=42.51 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
..|+..+.+.|+ ++++++++.|++.++..+..+.+|--|+.--+.-+.+|.+||+.++-
T Consensus 147 ~~i~~~~~~~~l-~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~ 205 (334)
T COG1466 147 QWIKKRAKELGL-KIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVS 205 (334)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHh
Confidence 578999999999 69999999999999999999999999999999888999999999873
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=79.94 E-value=6.9 Score=33.02 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchh-hhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 009476 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (534)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (534)
++|+++.++.+. +.......+..+..+..+..-....++. ..+|.++.++- +++..+|..|+.+
T Consensus 8 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------~~~~~v~~~a~~~ 72 (120)
T cd00020 8 GLPALVSLLSSS------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---------SEDEEVVKAALWA 72 (120)
T ss_pred ChHHHHHHHHcC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---------CCCHHHHHHHHHH
Confidence 566666666433 3555566677777787774333334443 78888888862 2456999999999
Q ss_pred HHHHHHHhCCCchh-hHHHHHHHHHHHhcCC
Q 009476 287 IASICTRFGHVYQN-LQSRVTRTLLHAFLDP 316 (534)
Q Consensus 287 L~~I~~k~~~~y~~-L~~RI~~tL~k~lldp 316 (534)
|..|+......-.- .+.-++..+.+.+.++
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 99999754321111 1122456666766654
No 76
>PRK07914 hypothetical protein; Reviewed
Probab=77.94 E-value=4.9 Score=41.85 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
..+|+..|++.|++ ++.++++.|++-++..+..+.+|.-|+.-..+ ..+|.+||+..+.
T Consensus 134 ~~wi~~~a~~~g~~-i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~ 192 (320)
T PRK07914 134 ADFVRKEFRSLRVK-VDDDTVTALLDAVGSDLRELASACSQLVADTG-GAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcC
Confidence 45799999999995 99999999999999999999999999875544 5799999988764
No 77
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.47 E-value=18 Score=30.39 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=49.7
Q ss_pred ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
..+|.++.++.+ +|.......+.....|..++.-..+.+. +.++|.++.++- +.+...|+.|..
T Consensus 49 ~~i~~l~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~---------~~~~~~~~~a~~ 113 (120)
T cd00020 49 GGLPALVQLLKS------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD---------SSNEDIQKNATG 113 (120)
T ss_pred CChHHHHHHHhC------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh---------cCCHHHHHHHHH
Confidence 556666666654 3566667778888888888764444444 457888887752 336799999999
Q ss_pred HHHHHH
Q 009476 286 LIASIC 291 (534)
Q Consensus 286 lL~~I~ 291 (534)
+|..||
T Consensus 114 ~l~~l~ 119 (120)
T cd00020 114 ALSNLA 119 (120)
T ss_pred HHHHhh
Confidence 999887
No 78
>PRK05907 hypothetical protein; Provisional
Probab=77.34 E-value=5.4 Score=41.92 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCccCHhhHHHHHh
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDV-EYRVREIMQEAIKCMRH-AHRTVLTANDVDSALN 66 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dv-eyrlreIiqeA~Kfmrh-skR~kLt~~DIn~AL~ 66 (534)
..+|...++..|. .++.++++.|++.+ +..+..+.+|--|.+-. +.++++|.+||+....
T Consensus 140 ~~Wi~~~~~~~g~-~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 140 AQLLIQRAKELGI-SCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHHcCC-CcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhc
Confidence 4689999999999 59999999999999 79999999999999999 6688999999998764
No 79
>PRK05629 hypothetical protein; Validated
Probab=76.58 E-value=6.8 Score=40.76 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.+|+..|+..|+ .+++++++.|++.+...+..+.+|--|+.-.. ..++|.+||+..+.
T Consensus 133 ~wi~~~~~~~g~-~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v~ 190 (318)
T PRK05629 133 GWVTQEFKNHGV-RPTPDVVHALLEGVGSDLRELASAISQLVEDT-QGNVTVEKVRAYYV 190 (318)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHCccHHHHHHHHHHHHhcC-CCCcCHHHHHHHhC
Confidence 579999999999 59999999999999999999999999987665 45799999987653
No 80
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.35 E-value=62 Score=35.76 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=104.1
Q ss_pred CcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCC-----ccccchhHHHHHHHHHh-----------------hhc-
Q 009476 168 LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSG-----LHPLVPYFTYFISEEVT-----------------RSL- 224 (534)
Q Consensus 168 LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~g-----L~qLLPYfv~FI~e~V~-----------------~nl- 224 (534)
+.-+-..||+.|++.-. .++-..+-+||..|..+-. ...+.|.+++|+..... .+.
T Consensus 64 ~~~~R~~fF~~I~~~~~-~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~ 142 (464)
T PF11864_consen 64 SGLMRAEFFRDISDPSN-DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLS 142 (464)
T ss_pred cHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 45667889999976532 2344667789999987643 57799999999987660 111
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhcccc-----------------CCCC-----------
Q 009476 225 ---KNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRL-----------------GNRF----------- 272 (534)
Q Consensus 225 ---~nl~~L~~llrmv~ALl~Np~L~Ie-pYLHqLlPsvLTCll~k~l-----------------~~~~----------- 272 (534)
.+-..+..+++++..+++.++-+++ ..++.++-.+++++-...- |.-|
T Consensus 143 ~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vL 222 (464)
T PF11864_consen 143 NLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVL 222 (464)
T ss_pred cccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHH
Confidence 1345688899999999999998886 7788888877766433211 1101
Q ss_pred --CCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc--CCC--CCchhhhhHHHHHHhh
Q 009476 273 --SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL--DPT--KSLSQHYGAIQGLAAL 333 (534)
Q Consensus 273 --~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll--dp~--k~l~t~YGAI~GL~aL 333 (534)
..+.=.+.+.|-+++..+|+.+. ....+++|...|. |+. +.....=|||.-|..+
T Consensus 223 Csi~~~~~l~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 223 CSIVNSVSLCKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRML 283 (464)
T ss_pred hhHhcccccchhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHH
Confidence 01222667777777777776432 2457788888884 332 2233344998887776
No 81
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=75.87 E-value=3.7 Score=40.49 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCHhhHHHHHhccCCC
Q 009476 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR-TVLTANDVDSALNLRNVE 71 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR-~kLt~~DIn~AL~~~nvE 71 (534)
|-||+..|+..+.++-=..+++.++.+++--..-.+-|||++|...|..-+- .-|.+.||..|.+.+..+
T Consensus 111 s~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred hcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 4689999999999987777999999999999999999999999999876554 369999999999987654
No 82
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=75.75 E-value=15 Score=35.60 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCccCHhhHHHHHhcc
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH--------------RTVLTANDVDSALNLR 68 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhsk--------------R~kLt~~DIn~AL~~~ 68 (534)
.||-+-+.-+.+..|+.-.+..+.+.++-.....+..|+++|....|--. +-+||.+|+..||+..
T Consensus 86 ~IPDavt~~yL~~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~~AL~Ey 165 (176)
T KOG3423|consen 86 TIPDAVTDHYLKKAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLSPALAEY 165 (176)
T ss_pred CCcHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHHHHHHHh
Confidence 46777788899999998777799999999999999999999998766322 2369999999999985
Q ss_pred CC
Q 009476 69 NV 70 (534)
Q Consensus 69 nv 70 (534)
++
T Consensus 166 Gi 167 (176)
T KOG3423|consen 166 GI 167 (176)
T ss_pred Cc
Confidence 54
No 83
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=75.63 E-value=8.1 Score=40.44 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=52.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
..+|+..|+..|+ .+++++++.|++-+...+..+.+|--|+.--++ ++|.+||+....
T Consensus 141 ~~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v~ 198 (328)
T PRK08487 141 LELLQERAKELGL-DIDQNALNHLYFIHNEDLALAANELEKLAILNE--PITLKDIQELVF 198 (328)
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHhc
Confidence 3579999999999 499999999999999999999999999998865 699999999763
No 84
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=74.19 E-value=20 Score=35.08 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=87.0
Q ss_pred HHHHHHHhhcC-CCcccccchhhhHHHH-----------HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH-------
Q 009476 233 LMRVARSLLRN-PHIHIEPYLHQMMPSV-----------ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR------- 293 (534)
Q Consensus 233 llrmv~ALl~N-p~L~IepYLHqLlPsv-----------LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k------- 293 (534)
-+.++.+|+++ +.=.+-.|.+.|+|.. +||++. |..-..|--|+++++.+...
T Consensus 6 Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--------Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 6 ALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--------DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred HHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--------CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 46677899998 7778899999999865 444433 44558999999999999863
Q ss_pred ------hCCCchhhHHHHHH-------HHHHHhcCCCCCchhhhhHHHHHHhhChhh-hHhhcccchHHHHHhhhhhhhh
Q 009476 294 ------FGHVYQNLQSRVTR-------TLLHAFLDPTKSLSQHYGAIQGLAALGPSV-VHLLILPNLELYLKFLEPEMLL 359 (534)
Q Consensus 294 ------~~~~y~~L~~RI~~-------tL~k~lldp~k~l~t~YGAI~GL~aLG~~a-Vr~lllP~L~~y~~~Le~~l~~ 359 (534)
-..+|..+-.++.. .|..++..++ ...+.=-.+.+|..|-..+ -..+=-..+...+..+.+.+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 12345555444333 4455554433 3444446666666664322 1222223455555555555532
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhh
Q 009476 360 EKQKNEMKRHEAWRVYGALQCAAG 383 (534)
Q Consensus 360 ~~~~~~~~r~ea~~v~~all~a~g 383 (534)
.+..++..+.-|+|+|+.+..
T Consensus 157 ---~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 ---RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred ---CCCcHHHHHHHHHHHHHcCCC
Confidence 456678889999999987654
No 85
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=73.40 E-value=39 Score=36.84 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=51.1
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009476 251 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 330 (534)
Q Consensus 251 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL 330 (534)
-+..++|.|..|+ .++++.+|..|+-.+.+|++.+.+..+.- +...+.+.|.|++ ....+.|+..+
T Consensus 111 ~~~~l~~~v~~ll---------~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~--~~V~~~a~~~l 176 (526)
T PF01602_consen 111 MAEPLIPDVIKLL---------SDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKD--PSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHHHHHHH---------HSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSS--HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHh---------cCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCc--chhHHHHHHHH
Confidence 3456667676665 35578999999999999999965544331 5777777776554 78888899999
Q ss_pred Hhh
Q 009476 331 AAL 333 (534)
Q Consensus 331 ~aL 333 (534)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
No 86
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=72.16 E-value=11 Score=42.35 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVE-----------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dve-----------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
.|..+++.-|+..++.+|...|.+... ..|.+++.+|.-+++..+++.++.+||+.|++.+
T Consensus 435 ~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 435 FIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp HHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 577889999999999998888877654 3689999999999999999999999999999875
No 87
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=69.44 E-value=28 Score=27.37 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH 50 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrh 50 (534)
.+|.+-+.-+.+..|+..-+..+.+.++--....+.+|+.+|..+.|.
T Consensus 2 ~IPD~v~~~yL~~~G~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~ 49 (51)
T PF03540_consen 2 TIPDEVTDYYLERSGFQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI 49 (51)
T ss_pred CCCHHHHHHHHHHCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999988777999999999999999999999887764
No 88
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.20 E-value=1.2e+02 Score=37.13 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=115.8
Q ss_pred HHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC
Q 009476 193 KQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF 272 (534)
Q Consensus 193 ~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~ 272 (534)
.+||.-|+..=|=.+++|-+..++..-+++ .++..-...|..+-++..=-+=.++.-|.+++|.|+..+
T Consensus 330 ~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--------- 398 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPPLFEALEAMLQS--TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--------- 398 (1075)
T ss_pred HHHHHHHHhcCChhhehHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc---------
Confidence 358888888888788888888888776655 367666667777777777666667776777777665543
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHH
Q 009476 273 SDNHWDLRNFVADLIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 351 (534)
Q Consensus 273 ~~~hw~LRd~AA~lL~~I~~k~~~~y~~-L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 351 (534)
.|.|=..|--|-+.++++.-.|...... =..|+.-.|...+ |.......+--|-.+|.++--+.-...|-|.|+.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5779999999999999888765532210 1123333344443 4444444444455666666667777778899999888
Q ss_pred hhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009476 352 FLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 393 (534)
Q Consensus 352 ~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~ 393 (534)
.+-..+.. ..++..=+.|..||=.++..+-...++-|
T Consensus 478 ~~l~~L~~-----~~~~~v~e~vvtaIasvA~AA~~~F~pY~ 514 (1075)
T KOG2171|consen 478 KKLLLLLQ-----SSKPYVQEQAVTAIASVADAAQEKFIPYF 514 (1075)
T ss_pred HHHHHHhc-----CCchhHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 43333321 11222234466666666665554444444
No 89
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=68.13 E-value=17 Score=40.87 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVE-Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dve-y-rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
++..|+..|+ .+++++.+.|+.... . .+..+++.|...+...+|..+|.+||..++..-..
T Consensus 272 l~~~a~k~~i-~is~~al~~I~~y~~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~~ 334 (531)
T TIGR02902 272 AKNAAEKIGI-NLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGNY 334 (531)
T ss_pred HHHHHHHcCC-CcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCccc
Confidence 4556777887 599999998876554 1 26667788888887778899999999999865443
No 90
>PRK09687 putative lyase; Provisional
Probab=67.67 E-value=20 Score=37.03 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=43.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 336 (534)
+..|.+|..|+..|+++|..... -.+++...+...+.|+ ....+++|+.+|..+|..
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDK--STNVRFAVAFALSVINDE 158 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCH
Confidence 56689999999999998754322 2467777787888776 557888999999888753
No 91
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=67.59 E-value=52 Score=36.81 Aligned_cols=159 Identities=13% Similarity=0.185 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhhcCCChHH---HHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCccc
Q 009476 172 LQLYFDKIRELTVSRSNSTV---FKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHI 248 (534)
Q Consensus 172 lQ~Yf~kIt~a~l~~~~~~~---r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~I 248 (534)
+..+.+.+.-.|+..++.+. -..+|..+=.+-....+.|.+..|+..++.+.- -......++.+..++.++.-.+
T Consensus 35 l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~--~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 35 LERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS--PKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 34444444444454333222 224566666677778889999999999998843 2222333555666666666545
Q ss_pred ccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCC-CCchhhhh
Q 009476 249 EPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPT-KSLSQHYG 325 (534)
Q Consensus 249 epYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~lldp~-k~l~t~YG 325 (534)
+... +.++|.|+.|+-. ..-.+-..|+++|..|++. ......+ .+.+...|.+.+..++ ......|-
T Consensus 113 ~~~~~~~l~~~i~~~L~~---------~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRD---------PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE 182 (503)
T ss_pred HHhcCccHHHHHHHHHcC---------CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence 5444 6789999999833 3447899999999999963 2222222 2222555666654322 23566788
Q ss_pred HHHHHHhhChhhhHhhc
Q 009476 326 AIQGLAALGPSVVHLLI 342 (534)
Q Consensus 326 AI~GL~aLG~~aVr~ll 342 (534)
.++-++...+++...+.
T Consensus 183 l~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 88888888887776544
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=64.66 E-value=14 Score=38.24 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.++.+++..|+ .++++++..|++-+.-.++.++++.-|....++ +++|.+||+.++.
T Consensus 183 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 183 ERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLLDQLISFGN-GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-CCCCHHHHHHHhC
Confidence 356777788998 599999999999999889999998888888776 4599999998773
No 93
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=64.51 E-value=21 Score=31.89 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=49.0
Q ss_pred CCChHHHHHHHH---HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQ---SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAe---s~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
-+|.+-|+.|.+ .+|- ++...--.....+|..+.+|++++.|-+|.-.-+++|++.+.+|...
T Consensus 23 rFP~ar~KkIMQ~deDiGK--V~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~s 88 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGK--VGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATES 88 (113)
T ss_pred cCCHHHHHHHHHhhhhhhh--hhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhh
Confidence 477788887764 3443 44333334567899999999999999999999999999999999753
No 94
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.65 E-value=1.7e+02 Score=30.40 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=80.3
Q ss_pred ccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhc-CCHHHHHHHHHHHHHhhcCC
Q 009476 166 HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL-KNFSLLFALMRVARSLLRNP 244 (534)
Q Consensus 166 h~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl-~nl~~L~~llrmv~ALl~Np 244 (534)
..+|.|.-.+.+++-..... .+++.+ ..|.. ....-|+ .+-.++ ++...+.|++.++.-|+...
T Consensus 24 ~~is~~~~~~ik~~~~~~~~-----~~~~~~---~~~~~--~~~~~~l-----~lL~~~~~~~d~v~yvL~li~dll~~~ 88 (312)
T PF03224_consen 24 GLISEEDLSLIKKLDKQSKE-----ERRELL---EEDGD--QYASLFL-----NLLNKLSSNDDTVQYVLTLIDDLLSDD 88 (312)
T ss_dssp TSS-HHHHHHHHHHHHHHH----------------------------------HHHHHH---HHHHHHHHHHHHHHHH-S
T ss_pred CCCCHHHHHHHHHHHCCCHH-----HHHHHH---Hhchh--hHHHHHH-----HHHHHccCcHHHHHHHHHHHHHHHhcC
Confidence 46788887787777665432 122222 22221 1111222 233333 67899999998888888776
Q ss_pred CcccccchhhhHH----HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCC-
Q 009476 245 HIHIEPYLHQMMP----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS- 319 (534)
Q Consensus 245 ~L~IepYLHqLlP----svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~- 319 (534)
. .....++.+-. ...+..+. .+ ..++|.+...|+.+|+.++...+..-......++..|.+.+.+-.++
T Consensus 89 ~-~~~~~~~~~~~~~~~~~~~~fl~-ll----~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~ 162 (312)
T PF03224_consen 89 P-SRVELFLELAKQDDSDPYSPFLK-LL----DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSS 162 (312)
T ss_dssp S-SSHHHHHHHHH-TTH--HHHHHH-H-----S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HH
T ss_pred H-HHHHHHHHhcccccchhHHHHHH-Hh----cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC
Confidence 6 33333333221 11222221 12 23488999999999999998766554443345666666666542222
Q ss_pred -chhhhhHHHHHHhh-ChhhhHhhcc
Q 009476 320 -LSQHYGAIQGLAAL-GPSVVHLLIL 343 (534)
Q Consensus 320 -l~t~YGAI~GL~aL-G~~aVr~lll 343 (534)
....+.|+.+|..| ..+..|..++
T Consensus 163 ~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 163 DSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred CcchHHHHHHHHHHHhCcchhHHHHH
Confidence 23348999999997 6677776654
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.04 E-value=19 Score=36.98 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
+.++.+++..|+. +++++++.|+....-.+|+++...-+.. ....++|.+||+.++..
T Consensus 191 ~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~~~~--~~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 191 DVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQTAA--LAAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHhCC
Confidence 3466777788994 9999999999999888999988877766 34458999999987754
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=60.50 E-value=71 Score=30.40 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh-hhHhhcccch-HHHHHhh
Q 009476 276 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS-VVHLLILPNL-ELYLKFL 353 (534)
Q Consensus 276 hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~-aVr~lllP~L-~~y~~~L 353 (534)
|..+|--+...++.+|.+|. ++-.+.+..+.+.|.|+ ....+..|+..|+.|-.+ .++. -+.+ ..+...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHHH
Confidence 57899999999999999975 45567777888888876 577789999999998332 2221 1222 3444333
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHH-hhhhhhhhhhhh
Q 009476 354 EPEMLLEKQKNEMKRHEAWRVYGALQCA-AGLCVYDRLKTV 393 (534)
Q Consensus 354 e~~l~~~~~~~~~~r~ea~~v~~all~a-~g~~~~~~~~~~ 393 (534)
. ..|..+|.-|..+..-+..- -+..+++-+...
T Consensus 73 ~-------D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~ 106 (178)
T PF12717_consen 73 V-------DENPEIRSLARSFFSELLKKRNPNIIYNNFPEL 106 (178)
T ss_pred c-------CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2 23566777787777777766 555566655555
No 97
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=59.84 E-value=43 Score=36.19 Aligned_cols=107 Identities=14% Similarity=0.258 Sum_probs=63.9
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCchhhH-HHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh------hH--hhcccc
Q 009476 275 NHWDLRNFVADLIASICTRFGHVYQNLQ-SRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV------VH--LLILPN 345 (534)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~k~~~~y~~L~-~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~a------Vr--~lllP~ 345 (534)
+.-.-|.-|.++|..+|++|+.....+- .-|...|.+.=.||....-..-||+.-+.++.... |. ..+++.
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 3456788899999999999986544333 23333333333478888899999999888874332 11 133455
Q ss_pred hHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHH
Q 009476 346 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA 381 (534)
Q Consensus 346 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a 381 (534)
..-+...+.|+|.+..+.....|.+|-++.-..-+.
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~ 338 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ 338 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh
Confidence 555567788888733344566788888776554443
No 98
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=59.77 E-value=2.8e+02 Score=34.06 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHH
Q 009476 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV 305 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI 305 (534)
+...+...++++.+++.--.-.+..|+..++|.++.-+ +....+|=+||++.-+.+....+|+-....-.-+-|
T Consensus 226 q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~------~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 226 QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC------NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh------cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 35667888999999999999999999999999877543 333466779999999999999999877666666788
Q ss_pred HHHHHHHhc-CCCCCchh-------------------------------hhhHHHHHHhhChhhhHhhccc---chHHHH
Q 009476 306 TRTLLHAFL-DPTKSLSQ-------------------------------HYGAIQGLAALGPSVVHLLILP---NLELYL 350 (534)
Q Consensus 306 ~~tL~k~ll-dp~k~l~t-------------------------------~YGAI~GL~aLG~~aVr~lllP---~L~~y~ 350 (534)
++.+++.+. ||+-...+ +=-|..++.+ +|.- .|+.++
T Consensus 300 ~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a--------~IsSR~E~L~~~~ 371 (1233)
T KOG1824|consen 300 INLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA--------VISSRLEMLPDFY 371 (1233)
T ss_pred HHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH--------HHhccHHHHHHHH
Confidence 888877765 88766554 2234444433 3333 234445
Q ss_pred HhhhhhhhhH-hhhhhhhHHHHHHHHHHHHHHhh
Q 009476 351 KFLEPEMLLE-KQKNEMKRHEAWRVYGALQCAAG 383 (534)
Q Consensus 351 ~~Le~~l~~~-~~~~~~~r~ea~~v~~all~a~g 383 (534)
..+-|.+-.. +..+++++.|...+|-+|+.-.+
T Consensus 372 q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 372 QTLGPALISRFKEREENVKADVFHAYIALLKQTR 405 (1233)
T ss_pred HHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 5555555332 45678899999999999887554
No 99
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=59.45 E-value=25 Score=32.54 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 21 lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
++-++...+-..+...+..|++||.++++-.||.+++..+|..|.+++
T Consensus 56 is~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 56 ISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 444555555555555588888999999999999999999999999874
No 100
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=58.69 E-value=90 Score=34.50 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=80.5
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC----chhhHHHHHHHHHHHhcCCCCCchh
Q 009476 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV----YQNLQSRVTRTLLHAFLDPTKSLSQ 322 (534)
Q Consensus 247 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~----y~~L~~RI~~tL~k~lldp~k~l~t 322 (534)
.|.|++.+|+-.+...+-...- .+| ||--+++-+++...... ...+-++++..+..+-.+|++|..+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s----~EN-----eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGS----AEN-----EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-S----TC------HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCC----ccc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 6789999888888887743211 344 34445555555544443 4677888899999999999999999
Q ss_pred hh--hHHHHHHhhCh----h---hhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh-hhhhhhhhh
Q 009476 323 HY--GAIQGLAALGP----S---VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG-LCVYDRLKT 392 (534)
Q Consensus 323 ~Y--GAI~GL~aLG~----~---aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g-~~~~~~~~~ 392 (534)
|| =+|..|..... + .++..++|-+..++..=-.+. --...++.+.|+..-. .-+-+..+.
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF----------~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF----------IPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT----------HHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99 45555555433 2 355566665555543211111 1246777777777654 112222222
Q ss_pred h---hcCCCccccccccCcc
Q 009476 393 V---LLRPPKQSRWESNRKG 409 (534)
Q Consensus 393 ~---~~~~~~~~~~~~~~~~ 409 (534)
+ |..| ..|...|++
T Consensus 160 L~~~Ll~p---~lWe~~gni 176 (435)
T PF03378_consen 160 LFPPLLSP---ALWERRGNI 176 (435)
T ss_dssp GHHHHTSG---GGGGSTTTH
T ss_pred HHHHHcCc---chhccCCCc
Confidence 2 4444 678877765
No 101
>PRK09687 putative lyase; Provisional
Probab=58.49 E-value=2.3e+02 Score=29.29 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHhhhcC--CccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccc
Q 009476 172 LQLYFDKIRELTVSRSNSTVFKQALLSLAMDS--GLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE 249 (534)
Q Consensus 172 lQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~--gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~Ie 249 (534)
+...+.-+...++...+...|..|...|..-. +... .|.++ . .....+.|-.. ..-...+.||-. +.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~---~-~l~~~~~D~~~-~VR~~a~~aLg~-----~~ 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIV---E-QSQITAFDKST-NVRFAVAFALSV-----IN 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHH---H-HHHHHhhCCCH-HHHHHHHHHHhc-----cC
Confidence 34456666655555566677777776665431 1111 12211 1 11111111111 112345566621 11
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHH
Q 009476 250 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQG 329 (534)
Q Consensus 250 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~G 329 (534)
-..-+|.++.++ .++.|.+|..|+.-|+.+ .+++ +.+...|.+.+.|+ ....+-+|+.|
T Consensus 157 --~~~ai~~L~~~L---------~d~~~~VR~~A~~aLg~~--~~~~------~~~~~~L~~~L~D~--~~~VR~~A~~a 215 (280)
T PRK09687 157 --DEAAIPLLINLL---------KDPNGDVRNWAAFALNSN--KYDN------PDIREAFVAMLQDK--NEEIRIEAIIG 215 (280)
T ss_pred --CHHHHHHHHHHh---------cCCCHHHHHHHHHHHhcC--CCCC------HHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 134566666665 356778999999999988 3322 35667777777765 44557789999
Q ss_pred HHhhChh
Q 009476 330 LAALGPS 336 (534)
Q Consensus 330 L~aLG~~ 336 (534)
|..+|..
T Consensus 216 Lg~~~~~ 222 (280)
T PRK09687 216 LALRKDK 222 (280)
T ss_pred HHccCCh
Confidence 9888774
No 102
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=55.49 E-value=29 Score=31.19 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 23 SDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 23 deaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++.+..|-+-|-.+|.++.+.|. .-++|.++.++||-.+||-
T Consensus 30 ~~tv~~Le~iV~~Yi~elt~~a~---~~g~rgk~~veD~~f~lRk 71 (109)
T KOG3901|consen 30 PETVDLLEDIVLEYITELTHAAM---EIGKRGKVKVEDFKFLLRK 71 (109)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH---HhcccCceeHHHHHHHHHh
Confidence 47788898999999999966654 4459999999999999974
No 103
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=55.11 E-value=11 Score=35.39 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=48.0
Q ss_pred CCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch--hhhHHHHHHHHhccccCCCCCCcchHHH
Q 009476 203 SGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL--HQMMPSVITCLVSKRLGNRFSDNHWDLR 280 (534)
Q Consensus 203 ~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYL--HqLlPsvLTCll~k~l~~~~~~~hw~LR 280 (534)
-|+..|+-.+.++... -..+-.+.......++.++||+.|.. -++-.+ +..+..+..|+.+ .+...|
T Consensus 107 ~G~~~L~~~L~~~~~~-~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s---------~~~~~r 175 (187)
T PF06371_consen 107 GGLEALLNVLSKLNKK-KEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS---------PNIKTR 175 (187)
T ss_dssp HHHHHHHHHHHHHHTH-HCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T---------TSHHHH
T ss_pred CCHHHHHHHHHHhhhh-hhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC---------CCHHHH
Confidence 3555555544443322 12222456777788999999998874 233322 3456666666643 345899
Q ss_pred HHHHHHHHHHH
Q 009476 281 NFVADLIASIC 291 (534)
Q Consensus 281 d~AA~lL~~I~ 291 (534)
..|..+|+.||
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.20 E-value=27 Score=39.24 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.++.+++.-|+ .+++++++.|++..+-.+|.++...-|.+.+++ .++|.+||...|.
T Consensus 182 ~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~alslLdqli~y~~-~~It~e~V~~llg 239 (491)
T PRK14964 182 EHLVDIAKKENI-EHDEESLKLIAENSSGSMRNALFLLEQAAIYSN-NKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 467788888999 599999999999999999999999989888887 4899999998774
No 105
>PRK09087 hypothetical protein; Validated
Probab=52.53 E-value=67 Score=32.01 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA--HRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhs--kR~kLt~~DIn~AL~~~ 68 (534)
-++..++..|+ .+++|+...|++..+-.++++..-..+.-+.+ ..+++|...+..+|+..
T Consensus 161 iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 161 VIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 46677778899 69999999999999988888887433333333 33569999999999764
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=51.97 E-value=1.6e+02 Score=28.42 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCC---ccc--ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC
Q 009476 225 KNFSLLFALMRVARSLLRNPH---IHI--EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV 297 (534)
Q Consensus 225 ~nl~~L~~llrmv~ALl~Np~---L~I--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~ 297 (534)
+|...=...++.+..++.+-. -.+ ...+.++++.+..|+- |..=.+|+.|-+++..+.+.|+..
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~---------D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS---------DADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT---------SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHCCHh
Confidence 455544455555555555544 333 3345788888888863 344589999999999999888754
No 107
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=51.86 E-value=36 Score=30.82 Aligned_cols=43 Identities=23% Similarity=0.094 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 23 SDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 23 deaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.+.++.|-+.|-.++.++.-+|...+. -|.++.++|+..|||-
T Consensus 30 ~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr~ 72 (126)
T COG5248 30 YDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALRR 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHhh
Confidence 378899999999999999999999988 7899999999999975
No 108
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.45 E-value=2.3e+02 Score=32.68 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=92.9
Q ss_pred cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
+-=+|-|+..+.|.+... |...-..++.-+.-|-.=|.+.+-.|+..+++-+++.+ .|++-++|+.+..
T Consensus 162 tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~L---------sD~s~eVr~~~~t 230 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNML---------SDSSDEVRTLTDT 230 (675)
T ss_pred ccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHh---------cCCcHHHHHHHHH
Confidence 444777888888777553 66666778888888999999999999999999877764 4677799999998
Q ss_pred HHHHHHHHhCCCchh-hHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhh
Q 009476 286 LIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLL 359 (534)
Q Consensus 286 lL~~I~~k~~~~y~~-L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~ 359 (534)
+|+.....-.++=.+ =..++..++...+..+.. -..--|+.=+.++=+-.=+ -++|++..++..|-|-+..
T Consensus 231 ~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHHHHHHHhcCccccCcccchhhccccccCCcH--HHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCC
Confidence 888777643332222 234566666555543222 1222345555554332223 2678888888887776643
No 109
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=51.32 E-value=78 Score=33.15 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=65.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH
Q 009476 215 FISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 293 (534)
Q Consensus 215 FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 293 (534)
|+.+.|...+.+-+.+.-++|..++++.+-.-.+..- ...+--++++|+++..+ .|..|..|.+.|..++.+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-------~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-------SWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence 4466676666677788889999999988766544333 25555678888876533 579999999999999998
Q ss_pred hCCCchhhHHHHHHHHHHHhcC
Q 009476 294 FGHVYQNLQSRVTRTLLHAFLD 315 (534)
Q Consensus 294 ~~~~y~~L~~RI~~tL~k~lld 315 (534)
.... +..-|+..+.+.+.+
T Consensus 237 ~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 237 NPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred ChHH---HHHHHHHHHHHHHHh
Confidence 7653 555666666666654
No 110
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=51.12 E-value=51 Score=37.93 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 9 IEVIAQSIG-VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 9 V~~iAes~G-i~~lsdeaa~~La~dve-------------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
|...++.-| +..+++++...|.+... ..|..|+++|..+++..++..++.+||..|++..
T Consensus 318 i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 318 VAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 344445554 66799999999976544 3478899999889988899999999999999875
No 111
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.99 E-value=5e+02 Score=31.10 Aligned_cols=173 Identities=16% Similarity=0.247 Sum_probs=97.9
Q ss_pred hcCCccccchhHHHHHHHHHh--h----hcCCHHH--HHHHHHHHHHhhcCCCcccccchhhhHHHHHH----HHhcccc
Q 009476 201 MDSGLHPLVPYFTYFISEEVT--R----SLKNFSL--LFALMRVARSLLRNPHIHIEPYLHQMMPSVIT----CLVSKRL 268 (534)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~V~--~----nl~nl~~--L~~llrmv~ALl~Np~L~IepYLHqLlPsvLT----Cll~k~l 268 (534)
+.+.-.+.-|||-.-|..-+. . |-+|+.. -..||.|| .|-.-..-+-+.++.+.++. |+=+..+
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI----k~st~~vy~~v~~~~l~il~kl~q~i~~~~l 560 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI----KNSTDDVYPMVQKLTLVILEKLDQTISSQIL 560 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 343334445777666655332 2 2234433 23455544 45554444445555554444 3322233
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCC---chhhhhHHHHHHhhChhhhHhhcccc
Q 009476 269 GNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS---LSQHYGAIQGLAALGPSVVHLLILPN 345 (534)
Q Consensus 269 ~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~---l~t~YGAI~GL~aLG~~aVr~lllP~ 345 (534)
+....+.+-.|.+.=...|..|++|.++.....--.|+..|++.|-. .++ -..-+|||.+|.+- +=+.
T Consensus 561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~--------Lg~~ 631 (859)
T KOG1241|consen 561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAES--------LGKG 631 (859)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHH--------HhHh
Confidence 33223456677777778899999999999999999999999999876 344 33567788777652 2344
Q ss_pred hHHHHHhhhhhhhhH--hhhhhhhHHHHHHHHHHHHHHhhhhh
Q 009476 346 LELYLKFLEPEMLLE--KQKNEMKRHEAWRVYGALQCAAGLCV 386 (534)
Q Consensus 346 L~~y~~~Le~~l~~~--~~~~~~~r~ea~~v~~all~a~g~~~ 386 (534)
+..|+..+.|.|.-. ...+..+-.-|.-+.|-|-+|.+.-+
T Consensus 632 F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i 674 (859)
T KOG1241|consen 632 FAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI 674 (859)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555555554321 11122333345556666666666543
No 112
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=50.92 E-value=36 Score=35.09 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCchhhHH---------HHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009476 275 NHWDLRNFVADLIASICTRFGHVYQNLQS---------RVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (534)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~k~~~~y~~L~~---------RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 333 (534)
++-.+|-.|.+.+-.++-.||..+-.-.. .+.+.|.+.+.+. ....+.=|+-|++.|
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 47799999999999999999977654444 5888888888755 444667777787775
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.54 E-value=39 Score=35.63 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.+..+|+.-|+ .++++++..|++-....++.++.+.-|..-.+..+ +|.+||...+.
T Consensus 175 ~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 175 HLAGIAVKEGI-KFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHhC
Confidence 56777888999 59999999999999888999988888887776655 99999887764
No 114
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=48.01 E-value=62 Score=40.47 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHH
Q 009476 233 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLH 311 (534)
Q Consensus 233 llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~-~L~~RI~~tL~k 311 (534)
.+-++.+.+.|..+... .+|+++-=+-..+.++ ...+||-|-++++.|++--|..|- .+-+-+--|+.+
T Consensus 544 ~~~~~~~~l~~~~i~~~-~L~~illkic~~l~~~---------s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~r 613 (1364)
T KOG1823|consen 544 ALVFLVLFLGNAEIVLR-NLPSILLDICYLLRSR---------SAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKR 613 (1364)
T ss_pred HHHHHHhcccchHHHHh-cCcHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455566666555443 3343333222222332 348999999999999987776662 455556667777
Q ss_pred HhcCCCCCchhhh--hHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHh
Q 009476 312 AFLDPTKSLSQHY--GAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEK 361 (534)
Q Consensus 312 ~lldp~k~l~t~Y--GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~ 361 (534)
.+.=-...++.|| ||+.+...-|. ...++=|.+....+.+--+...++
T Consensus 614 g~q~hvl~~tvh~ll~a~~~v~~~g~--Ld~~~~~~i~i~~e~~fg~v~~ek 663 (1364)
T KOG1823|consen 614 GFQVHVLSYTVHYLLGAMKNVLKAGS--LDTCLDPIIKIFNENLFGEVGKEK 663 (1364)
T ss_pred hhhhhhhHHHHHHHHHHHhccccccc--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7765566677777 66666665554 444556677777777765555443
No 115
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=47.25 E-value=89 Score=29.08 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 4 VPKETIEVIAQSIGVYN--LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~--lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
+|++||+-+..++==.+ .+.|+-..+-..--|.|.-+--+|.+.+..-+.+++..++|=.||+.+..+
T Consensus 12 LPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKALenLef~ 81 (148)
T COG5150 12 LPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKALENLEFE 81 (148)
T ss_pred CcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccHH
Confidence 89999988877764333 466777777777778899999999999999999999999999999887654
No 116
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=46.69 E-value=74 Score=31.48 Aligned_cols=58 Identities=7% Similarity=-0.019 Sum_probs=46.5
Q ss_pred HHHHcCC---CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009476 12 IAQSIGV---YNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (534)
Q Consensus 12 iAes~Gi---~~lsdeaa~~La~dve---yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~n 69 (534)
.++..|. ..+++++++.|++... ..|..++..|...+-..+.+.++.+||+.|++..+
T Consensus 204 ~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 204 RLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 3445564 3689999999988776 46888888888888777888999999999998765
No 117
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.86 E-value=33 Score=36.56 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
.++.+++..|+ .++++++..+++...-.+|.++...-+....+ +.++|.+||..++.....+
T Consensus 186 ~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~-~~~It~~~v~~~l~~~~~~ 247 (363)
T PRK14961 186 FLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNLLEHAINLG-KGNINIKNVTDMLGLLNEK 247 (363)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCHH
Confidence 45667778897 59999999999988877888777776666554 6789999999988554433
No 118
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=45.58 E-value=36 Score=34.25 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=57.0
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
+|.+-||.+.+. -|+.-++.||--..|.-.|-.|.|+.-.|--.+...||++|.-+||-.|++...+
T Consensus 110 LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeM 177 (286)
T COG5208 110 LPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEM 177 (286)
T ss_pred CcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Confidence 677777776653 3455578888888999999999999999999999999999999999999987665
No 119
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=44.98 E-value=87 Score=30.79 Aligned_cols=92 Identities=14% Similarity=0.366 Sum_probs=61.7
Q ss_pred cCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHh-hcCCCc--ccccchhhhHHHHHHHHhcccc--CCCCC-Cc
Q 009476 202 DSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSL-LRNPHI--HIEPYLHQMMPSVITCLVSKRL--GNRFS-DN 275 (534)
Q Consensus 202 D~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~AL-l~Np~L--~IepYLHqLlPsvLTCll~k~l--~~~~~-~~ 275 (534)
...+-+++|-++.-|-..+.. +|.+.....|++++.| ...+.+ .|-||+.||+| ++.....++. |.... ..
T Consensus 71 ~~kilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp-~ln~f~~k~~n~gd~i~y~~ 147 (183)
T PF10274_consen 71 GEKILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP-VLNLFKNKNVNLGDGIDYRK 147 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHhcccCCCccccccc
Confidence 344667777776666555533 5888888999999888 455555 78999999999 4554444442 22111 23
Q ss_pred chHHHHHHHHHHHHHHHHhCC
Q 009476 276 HWDLRNFVADLIASICTRFGH 296 (534)
Q Consensus 276 hw~LRd~AA~lL~~I~~k~~~ 296 (534)
.=.++|.-...|..+.+.-|.
T Consensus 148 ~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 148 RKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred ccchhHHHHHHHHHHHHhcCh
Confidence 457888888888877766554
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=44.68 E-value=79 Score=25.49 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=39.7
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 336 (534)
+..|.+|..|+.+|+.+ + .+++...|.+.+.| .......=|+..|..+|..
T Consensus 11 ~~~~~vr~~a~~~L~~~----~------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 11 DPDPQVRAEAARALGEL----G------DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp SSSHHHHHHHHHHHHCC----T------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHc----C------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 56789999999999932 2 24778888888854 5568889999999999863
No 121
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=44.19 E-value=4.5e+02 Score=28.48 Aligned_cols=199 Identities=18% Similarity=0.214 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHH---Hhhh----cCCccccchhHHHHHHHHHhhh--cCCHHHHHHHHHHHHHhh
Q 009476 171 ELQLYFDKIRELTVSRSNSTVFKQALL---SLAM----DSGLHPLVPYFTYFISEEVTRS--LKNFSLLFALMRVARSLL 241 (534)
Q Consensus 171 ElQ~Yf~kIt~a~l~~~~~~~r~~AL~---sL~t----D~gL~qLLPYfv~FI~e~V~~n--l~nl~~L~~llrmv~ALl 241 (534)
+.+.+.+++++.+...+++..+..+++ .|-+ +..+...+-.+..-+ .... -.....+..+.=+++||+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHH
Confidence 555588888887766555544444433 3332 222222222222222 0111 123456677778899999
Q ss_pred cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHh---------CCCchhhHHHHHHHHHHH
Q 009476 242 RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF---------GHVYQNLQSRVTRTLLHA 312 (534)
Q Consensus 242 ~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~---------~~~y~~L~~RI~~tL~k~ 312 (534)
-..+ |..-+++.-++.++-. ..+...||+-+..|+.-+ .+.=.-=|+|+..+....
T Consensus 263 ~R~~----~~~~~~~~~L~~lL~~-----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 263 MRGH----PLATELLDKLLELLSS-----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HcCC----chHHHHHHHHHHHhCC-----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 8665 5555555555554322 467788888887777531 111122267777776666
Q ss_pred hcCCCCC----chhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 009476 313 FLDPTKS----LSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 388 (534)
Q Consensus 313 lldp~k~----l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~ 388 (534)
|.+.-++ ....| +.+|+.+=..+=..++.|+++.++..|-+.+... +...+.-+-.+.-.++.-....+-+
T Consensus 328 L~~~~~~~~~~~k~~y--L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNY--LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHhhcChhhHHHH--HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 6544333 22344 4455554445557778899999999888887532 3334555555555555544444444
Q ss_pred hhhh
Q 009476 389 RLKT 392 (534)
Q Consensus 389 ~~~~ 392 (534)
-+..
T Consensus 403 hl~s 406 (415)
T PF12460_consen 403 HLSS 406 (415)
T ss_pred HHHH
Confidence 4433
No 122
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=44.02 E-value=2.5e+02 Score=29.47 Aligned_cols=98 Identities=13% Similarity=0.229 Sum_probs=62.0
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHHhcCCCCCchhhh
Q 009476 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (534)
Q Consensus 247 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~--~~y~~L~~RI~~tL~k~lldp~k~l~t~Y 324 (534)
+++.+...|+..++.|+ |+ |.. .=+..|+++++.+|-+.| .....+...+...|.+++.|...+...+=
T Consensus 79 ~v~~~~~tL~~~~~k~l--kk-g~~------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~ 149 (309)
T PF05004_consen 79 FVEDRRETLLDALLKSL--KK-GKS------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARA 149 (309)
T ss_pred HHHHHHHHHHHHHHHHh--cc-CCH------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 45555666777777776 21 111 236789999999999966 66778888999999999999877655433
Q ss_pred hHHHHH------HhhChhhhHhhcccchHHHHHhhh
Q 009476 325 GAIQGL------AALGPSVVHLLILPNLELYLKFLE 354 (534)
Q Consensus 325 GAI~GL------~aLG~~aVr~lllP~L~~y~~~Le 354 (534)
.++.+| ..-+.+.+.. ++..+..+|....
T Consensus 150 ~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~ 184 (309)
T PF05004_consen 150 ACLEALAICTFVGGSDEEETEE-LMESLESIFLLSI 184 (309)
T ss_pred HHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHh
Confidence 333222 2223334432 3455665555443
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=43.02 E-value=50 Score=38.00 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.++.+++.-|+ .++++++..|+.-.+..+|.++.+.-|.+.++ ..++|.+||...+.
T Consensus 198 ~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g-~g~It~e~V~~llg 255 (598)
T PRK09111 198 AHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSLLDQAIAHG-AGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCcCHHHHHHHhC
Confidence 456778888899 59999999999999999999999888887776 56899999997763
No 124
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=42.99 E-value=3.2e+02 Score=29.75 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhH
Q 009476 278 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVH 339 (534)
Q Consensus 278 ~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr 339 (534)
.+++.+...+..++.+ +++++..++..+.+.+.+ .......-.+++.+.+.|.....
T Consensus 392 ~~~~~~~~~i~~ll~~----~~~~~~~~l~~L~~~l~~-~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 392 YVSNEIINVIRDLLSN----NPELREKILKKLIELLED-ISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp GCHCHHHHHHHHHHHH----STTTHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHCHHHTT
T ss_pred cccchHHHHHHHHhhc----ChhhhHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccCCcccc
Confidence 4466777777777776 466788888889888876 33344567888888888886655
No 125
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.94 E-value=1.1e+02 Score=39.09 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=75.9
Q ss_pred HHhhhcCCc-cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CCCcccccchhhhHHHHHHHHhccccCCCCCC
Q 009476 197 LSLAMDSGL-HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD 274 (534)
Q Consensus 197 ~sL~tD~gL-~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~ 274 (534)
+++..-.-+ +-+.|-|++-+...+.. ..+...-...+.++++.+- |.+++-+.-...+-- ++-|++ .|
T Consensus 1511 ~~lm~~~~~~~~l~~e~l~~l~~~~~~-~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~-l~~s~l--------~D 1580 (1710)
T KOG1851|consen 1511 HSLMSLSWIGHHLQPEFLRDLKMLTAD-SSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRK-LLESLL--------ND 1580 (1710)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-HHHHHH--------cc
Confidence 334333333 45667777766653322 2334444446777776553 333333433333333 222222 35
Q ss_pred cchHHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009476 275 NHWDLRNFVADLIASICT-RFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (534)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~-k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 333 (534)
++-+.|+.||.+|+.+.+ .|....+ +..+++.+.+..+.++.....||+.||.|+
T Consensus 1581 ~~i~vre~Aa~~Lsgl~~~s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~ 1636 (1710)
T KOG1851|consen 1581 DQIEVREEAAKCLSGLLQGSKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAI 1636 (1710)
T ss_pred hHHHHHHHHHHHHHHHHhccccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHH
Confidence 667899999999987765 4444443 777888888888888899999999999987
No 126
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=42.87 E-value=25 Score=26.51 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=29.6
Q ss_pred hhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHH
Q 009476 240 LLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASI 290 (534)
Q Consensus 240 Ll~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I 290 (534)
|..+..-.+++|+.+++|.++.++ .|++-.+|..|+..|+.|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L---------~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLL---------QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHT---------TSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcC
Confidence 334445567888888888877664 133349999999988765
No 127
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.66 E-value=3.4e+02 Score=32.40 Aligned_cols=136 Identities=21% Similarity=0.225 Sum_probs=87.1
Q ss_pred ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
-++|...-||-+.++.- |+..-..-.-..-+.+.=|.- .+-|+++|.+|+++.-+..+.+ -.||-+|-
T Consensus 360 ~Iv~~Vl~Fiee~i~~p--dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl---------~VkdTaAw 428 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNP--DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL---------WVKDTAAW 428 (859)
T ss_pred cchhhhHHHHHHhcCCc--chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh---------hhcchHHH
Confidence 36777777777666442 343333222223355555554 8899999999999987643322 44699999
Q ss_pred HHHHHHHHhCC--CchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhh-----cccchHHHHHhh
Q 009476 286 LIASICTRFGH--VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLL-----ILPNLELYLKFL 353 (534)
Q Consensus 286 lL~~I~~k~~~--~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~l-----llP~L~~y~~~L 353 (534)
.+++||+-... ....+-+-+...|.+-|.|.-+--..-=+|+.||+.=-.++.+.- .-|....+...|
T Consensus 429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 429 TLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSL 503 (859)
T ss_pred HHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHH
Confidence 99999974321 112344556677888888887777788899999986555544332 335555555544
No 128
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=42.39 E-value=82 Score=31.75 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~n 69 (534)
-||+.-||.|-++= .|..+...+=-.+...+|.++..|++.+.+..+--.-++|+++++.+|...-+
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~ 80 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDP 80 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccc
Confidence 47888888887641 22235555556678899999999999999999999999999999999987543
No 129
>PRK06620 hypothetical protein; Validated
Probab=42.03 E-value=62 Score=31.97 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMR---HAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmr---hskR~kLt~~DIn~AL~ 66 (534)
-++..++.-|+ .+++|++..|++..+-.+|++..---+.-+ ..+ +.+|...+..+|+
T Consensus 155 ~l~k~~~~~~l-~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~ 214 (214)
T PRK06620 155 LIFKHFSISSV-TISRQIIDFLLVNLPREYSKIIEILENINYFALISK-RKITISLVKEVLN 214 (214)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhC
Confidence 46667777898 699999999999998777777664444332 333 4689998888764
No 130
>PRK08727 hypothetical protein; Validated
Probab=41.70 E-value=72 Score=31.71 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreI---iqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++..|+.-|+ .+++++...|++..+-.++.+ ++.....+...+| ++|.+.+...|..
T Consensus 171 L~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 171 LRERAQRRGL-ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 4445555688 699999999999988445555 6666555555555 7999999988854
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.15 E-value=57 Score=36.53 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
+.++.+++..|+ .++++++..|++-.+-.+|.+++..-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-~~~It~~~V~~~l 241 (486)
T PRK14953 185 EYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLLDQASTYG-EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHh
Confidence 367778888998 59999999999999988999988888877665 5579999999887
No 132
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=40.39 E-value=50 Score=37.55 Aligned_cols=111 Identities=16% Similarity=0.284 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH----------hccccCCCCCCcchHH
Q 009476 210 PYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL----------VSKRLGNRFSDNHWDL 279 (534)
Q Consensus 210 PYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCl----------l~k~l~~~~~~~hw~L 279 (534)
||+.+|+-+....|+. .+.++++++|-..|-+++-.-+-.++=-+|+.- .-..+| +.
T Consensus 174 k~l~~~~fesflk~l~-----fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlG--------Dk 240 (821)
T COG5593 174 KYLKQRIFESFLKNLR-----FRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLG--------DK 240 (821)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhc--------cc
Confidence 7888888887766542 345666666666665554433222221111110 001122 34
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009476 280 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (534)
Q Consensus 280 Rd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 333 (534)
|+.-|.--++++-+--...|+++.-|++-.-...+-|+..+.+.|=|++.|...
T Consensus 241 ~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt 294 (821)
T COG5593 241 RDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQT 294 (821)
T ss_pred hhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHH
Confidence 665566666677777777899999999999999999999999999999988654
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.37 E-value=62 Score=34.96 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA----HRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhs----kR~kLt~~DIn~AL~ 66 (534)
.++.+++.-|+ .++++++..|++-+.-.++.++.+.-|....+ .++++|.+||..++.
T Consensus 194 ~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 194 QLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 56667777788 59999999999999998999988888766553 567899999988873
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=40.31 E-value=66 Score=32.58 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.++.+++..|+ .++++++..|++...-.+|.++.+.-+.... .+++|.+||..++.
T Consensus 168 ~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~--~~~it~~~v~~~~~ 224 (319)
T PRK00440 168 ERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhC
Confidence 346777778898 5999999999998887888888877766654 36799999988873
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=38.94 E-value=2.4e+02 Score=34.28 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=82.0
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc----CCCC-
Q 009476 244 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----DPTK- 318 (534)
Q Consensus 244 p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll----dp~k- 318 (534)
|.=-+-|.+..|+|-+|.|+=-. ....|--+-+++.......+ +|++-=..|+...|+ |++.
T Consensus 899 P~~vllp~~~~LlPLLLq~Ls~~---------D~~v~vstl~~i~~~l~~~~----tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 899 PKQVLLPQFPMLLPLLLQALSMP---------DVIVRVSTLRTIPMLLTESE----TLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred CHHhhccchhhHHHHHHHhcCCC---------ccchhhhHhhhhhHHHHhcc----ccchHHHhHHHHHHHhcCCCCCcc
Confidence 33366788888899888886222 22456666677777776655 455555555555544 3443
Q ss_pred CchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHH
Q 009476 319 SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGA 377 (534)
Q Consensus 319 ~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~a 377 (534)
+-..+--|+.||.+|-...=-..++|.-+..+..|.+-+.+- .+.+|.||.++.+.
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDTRQN 1021 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHHhhh
Confidence 366788999999998774445568899999999999998754 47889999888775
No 136
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=38.90 E-value=5.2e+02 Score=27.72 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=117.6
Q ss_pred cccCcHHHHH-HHHHHHHHhhcC-CChHHHHHHHHHhhhcC---Cc-cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 009476 165 KHVLSKELQL-YFDKIRELTVSR-SNSTVFKQALLSLAMDS---GL-HPLVPYFTYFISEEVTRSLKNFSLLFALMRVAR 238 (534)
Q Consensus 165 kh~LSkElQ~-Yf~kIt~a~l~~-~~~~~r~~AL~sL~tD~---gL-~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ 238 (534)
...||.|... +++..++++... .++.....+|..|+.-. .+ ..-.|--+..+-..+...+........-+.+++
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 3468888888 678888877443 34455566777776521 11 111111122222233322334444555566666
Q ss_pred HhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCch-----------------hh
Q 009476 239 SLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-----------------NL 301 (534)
Q Consensus 239 ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~-----------------~L 301 (534)
-|+.+---.+-...+.-+|.++++++... . .+|..|..++..+..-.+. .. ++
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~---k------~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~ 229 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSA---K------DIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGKL 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc---h------HHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhccccccccH
Confidence 66666555566668888999999988741 1 5677776666555544332 11 12
Q ss_pred HHHHHHHHHHHhcC--CCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009476 302 QSRVTRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (534)
Q Consensus 302 ~~RI~~tL~k~lld--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (534)
-.-+.+.+.+.+.+ ..+......+++++|. |...++ -.+++..++...|.-... .+...|.+|..+...|.
T Consensus 230 ~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL--~~~~~~--~w~~~n~wL~v~e~cFn~---~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 230 IQLYCERLKEMIKSKDEYKLAMQIWSVVILLL--GSSRLD--SWEHLNEWLKVPEKCFNS---SDPQVKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh--CCchhh--ccHhHhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 22233345555555 2234556789998887 555433 467888888888777643 45677888888888777
Q ss_pred HHhh
Q 009476 380 CAAG 383 (534)
Q Consensus 380 ~a~g 383 (534)
-++.
T Consensus 303 y~~~ 306 (372)
T PF12231_consen 303 YASN 306 (372)
T ss_pred HHhc
Confidence 7443
No 137
>PTZ00429 beta-adaptin; Provisional
Probab=38.27 E-value=5.4e+02 Score=30.66 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=53.7
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhh
Q 009476 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYG 325 (534)
Q Consensus 246 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YG 325 (534)
|.+.-.+-.++++|..|+. +.+=.+|..||-.+.+|.+.+....+ ..++...|.+.+. ++.....+.
T Consensus 132 Ir~~~i~e~l~~~lkk~L~---------D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~~LL~--D~dp~Vv~n 198 (746)
T PTZ00429 132 IRVSSVLEYTLEPLRRAVA---------DPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLVELLN--DNNPVVASN 198 (746)
T ss_pred CCcHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHHHHhc--CCCccHHHH
Confidence 5556666677788888873 44559999999999999987665432 1234445555444 577888899
Q ss_pred HHHHHHhhC
Q 009476 326 AIQGLAALG 334 (534)
Q Consensus 326 AI~GL~aLG 334 (534)
|+..|.++.
T Consensus 199 Al~aL~eI~ 207 (746)
T PTZ00429 199 AAAIVCEVN 207 (746)
T ss_pred HHHHHHHHH
Confidence 999888884
No 138
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=37.76 E-value=50 Score=34.50 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC-hhhhHhhc--------cc--chHHHHH---------hhhhhhhhHhhhh
Q 009476 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG-PSVVHLLI--------LP--NLELYLK---------FLEPEMLLEKQKN 364 (534)
Q Consensus 305 I~~tL~k~lldp~k~l~t~YGAI~GL~aLG-~~aVr~ll--------lP--~L~~y~~---------~Le~~l~~~~~~~ 364 (534)
.+.++.++|.|.+.++..+|-|+.-|..+| +.+++... ++ .+..++- .|...+.+++ ..
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~des-q~ 82 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDES-QE 82 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccc-cc
Confidence 456777888888888888888888888874 44444321 11 1111111 2233344444 36
Q ss_pred hhhHHHHHHHHHHHH
Q 009476 365 EMKRHEAWRVYGALQ 379 (534)
Q Consensus 365 ~~~r~ea~~v~~all 379 (534)
.++||||-.+.|++.
T Consensus 83 pmvRhEAaealga~~ 97 (289)
T KOG0567|consen 83 PMVRHEAAEALGAIG 97 (289)
T ss_pred hHHHHHHHHHHHhhc
Confidence 789999999999987
No 139
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=37.26 E-value=1.8e+02 Score=35.22 Aligned_cols=140 Identities=18% Similarity=0.256 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhcC------CChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhc--CCHHHHHHHHHHHHHhhcCC
Q 009476 173 QLYFDKIRELTVSR------SNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNP 244 (534)
Q Consensus 173 Q~Yf~kIt~a~l~~------~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl--~nl~~L~~llrmv~ALl~Np 244 (534)
|.||-.|.-.++.. +.....-+||..+=++--.++++|.+-...-= +-+.+ -|...-...++.+.-++.=-
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPL-LLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPL-LLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHH-HHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 78898888776542 23455667887655565568888876543321 11111 23333223344445455444
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhcCCCCC
Q 009476 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKS 319 (534)
Q Consensus 245 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k~lldp~k~ 319 (534)
+==+..|+.-++|.+++. + ....+|--..|..|=++|..+.++--+.| ..-|+.|++.+.+.|-||++-
T Consensus 941 ~tL~t~~~~Tlvp~lLsl--s----~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSL--S----SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred cccchHHHhHHHHHHHhc--C----CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 445677888888877654 2 22233457899999999999998433222 344788999999999888753
No 140
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.08 E-value=74 Score=40.27 Aligned_cols=79 Identities=13% Similarity=0.330 Sum_probs=60.3
Q ss_pred hhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHH
Q 009476 200 AMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 279 (534)
Q Consensus 200 ~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 279 (534)
+-.|-+.+|+|.+.+|=.+- |...-..|-.+=.+|+.-+..-++.|+..|+-=+|-- .++..|+.
T Consensus 991 kl~p~l~kLIPrLyRY~yDP------~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~---------lt~kewRV 1055 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRYQYDP------DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN---------LTSKEWRV 1055 (1702)
T ss_pred hhhhHHHHhhHHHhhhccCC------cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh---------ccchhHHH
Confidence 34567888888888875542 2334445667788999999999999999887755432 25678999
Q ss_pred HHHHHHHHHHHHHH
Q 009476 280 RNFVADLIASICTR 293 (534)
Q Consensus 280 Rd~AA~lL~~I~~k 293 (534)
|+-+.--|+.+++.
T Consensus 1056 ReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1056 REASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999985
No 141
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=37.03 E-value=1.2e+02 Score=31.95 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 20 NLSSDVALALAPDVEY------RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 20 ~lsdeaa~~La~dvey------rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
.++++++..+++.+.. ++.+++..|...+...++.++|.+||..|+...
T Consensus 228 ~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 228 VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 5899999999888843 244677788888888888999999999999876
No 142
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=36.59 E-value=1.8e+02 Score=28.29 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=73.2
Q ss_pred cccchhhhHHHHHHHHhccc-------cCCC--CCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCC
Q 009476 248 IEPYLHQMMPSVITCLVSKR-------LGNR--FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK 318 (534)
Q Consensus 248 IepYLHqLlPsvLTCll~k~-------l~~~--~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k 318 (534)
|-|++.+++|.++.=..-+. +|+= ..|+-.++|..|=.+|..++..+..... -.-+.......|-| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 45778889998775544331 3441 2689999999999999999997655443 23456666777777 33
Q ss_pred Cch-hhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHh
Q 009476 319 SLS-QHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 382 (534)
Q Consensus 319 ~l~-t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~ 382 (534)
.+. --|.-+.=|..+.+..+.. +|..+.+.++..+. .+.+...++.|.+|...+.-.++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~-~k~k~~AvkQE~Ek~~E~~rs~l 139 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLS-KKLKENAVKQEIEKQQELIRSVL 139 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH-----TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhh-ccCCCCcccccHHHHHHHHHHHH
Confidence 222 2355556667777766655 45555555555554 23333344555555555444443
No 143
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.44 E-value=85 Score=35.03 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.++.+++.-|+ .++++++..|++-..--+|.++..--+....+. .++|.+||..++..
T Consensus 184 ~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 184 RLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWKFSE-GKITLETVHEALGL 241 (472)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcC
Confidence 46677777888 699999999999887777776666655554443 34999999988844
No 144
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=35.52 E-value=96 Score=31.89 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~ 54 (534)
-|..+.+-+|. +++.|-...-|+.+|.+++++.+...+-++|-+|+
T Consensus 192 vve~lnk~~~l-~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~~ 237 (244)
T COG1938 192 VVEALNKMLGL-NVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVERE 237 (244)
T ss_pred HHHHHHHHhcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 36777888999 79999999999999999999999999999987665
No 145
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.32 E-value=65 Score=37.29 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA----HRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhs----kR~kLt~~DIn~AL~ 66 (534)
.++.+++.-|+ .++++++..|++-+.-.++.++.+.-|.+-.+ .++.+|.+||...+.
T Consensus 194 ~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 194 QLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 56677778898 59999999999999999999999988888775 377899999988763
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.96 E-value=9.2e+02 Score=30.28 Aligned_cols=150 Identities=19% Similarity=0.128 Sum_probs=99.4
Q ss_pred HHHHHHHHH--HHHHHHhCCCc-hhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhh
Q 009476 279 LRNFVADLI--ASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEP 355 (534)
Q Consensus 279 LRd~AA~lL--~~I~~k~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~ 355 (534)
.|-.|+.|+ ..|...|++.- ...-..++.+..-.|. .++....=+||-++..+=..-=+.++-|+++.++..|-.
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ 876 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence 355555554 45666665533 3445566666666665 556666778888888776555556778888888777665
Q ss_pred hhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcc-----cccc-----ccCcccccCCCCccCcccccc
Q 009476 356 EMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQ-----SRWE-----SNRKGMIVFPSKRKASMDNLM 425 (534)
Q Consensus 356 ~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~ 425 (534)
-. .+.+++.--+|...|=+-+.+|-.+.|+.|++ -.. -.|| .+.+.+..++.++..+.+-..
T Consensus 877 ls------~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p--ee~~klL~nIRK~r~R~~rK~a~~~d~~~~~~s~d~s~ 948 (1176)
T KOG1248|consen 877 LS------HDHKIKVRKKVRLLLEKLIRKFGAEELESFLP--EEDMKLLTNIRKRRRRKKRKKAMIVDIEDRSDSTDGSQ 948 (1176)
T ss_pred HH------HhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH--HHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccc
Confidence 32 24566677788888888888999999999865 111 1222 344566677888888888777
Q ss_pred CCCCcccccccCC
Q 009476 426 LQPPVKKMATLGP 438 (534)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (534)
-.|+.++-.++-.
T Consensus 949 ~~s~~~~a~~i~d 961 (1176)
T KOG1248|consen 949 KASAQKKAKTIED 961 (1176)
T ss_pred ccccccccchhHH
Confidence 7788777655443
No 147
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.36 E-value=89 Score=35.27 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccCHhhHHHHHhc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH--RTVLTANDVDSALNL 67 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhsk--R~kLt~~DIn~AL~~ 67 (534)
+.++.+++.-|+ .++++++..|++..+--+|.++++--|...++. +.++|.+||+..+..
T Consensus 194 ~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~ 255 (507)
T PRK06645 194 KLLEYITKQENL-KTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGL 255 (507)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCC
Confidence 356778888898 589999999999998888988888877766653 457999999988744
No 148
>PRK08084 DNA replication initiation factor; Provisional
Probab=34.07 E-value=1.3e+02 Score=29.91 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHHh
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrh--skR~kLt~~DIn~AL~ 66 (534)
++..|+.-|+ .+++|++..|+...+-.+|++..---+..+. .+.+++|.+.+..+|.
T Consensus 176 l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 176 LQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 4444556788 6999999999999997777766655554433 2334599998888875
No 149
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=33.06 E-value=1.8e+02 Score=27.94 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEY---RVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dvey---rlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
++..++..|+ .+++++++.|+..... .++++++++-.+++..++ ++|.+.++..|+
T Consensus 168 l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~~ 226 (226)
T TIGR03420 168 LQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVLA 226 (226)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC
Confidence 3445556788 5999999999997653 267777788877777664 699999888764
No 150
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.01 E-value=1.2e+02 Score=35.35 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=51.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYR-------------VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyr-------------lreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
++.+++.-++..++.+|+..|....+.+ +..++++|.-+++--+|+.+|++||..|++..
T Consensus 327 ~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 327 VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 4566677789999999999999888753 67889999999998899999999999999883
No 151
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.38 E-value=67 Score=37.07 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.++.+|+.-|+ .++++++..|++-+.-.+|.++.+.-|.+-.+.++ +|.++|...+.
T Consensus 187 ~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~-It~~~V~~~l~ 244 (614)
T PRK14971 187 NHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGN-ITYKSVIENLN 244 (614)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-ccHHHHHHHhC
Confidence 356778888999 59999999999999988999998887876666655 88887766553
No 152
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.31 E-value=3.8e+02 Score=33.37 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHhhcCCChHHHHH----HHHH-hhhcCCc--cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 009476 169 SKELQLYFDKIRELTVSRSNSTVFKQ----ALLS-LAMDSGL--HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL 241 (534)
Q Consensus 169 SkElQ~Yf~kIt~a~l~~~~~~~r~~----AL~s-L~tD~gL--~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl 241 (534)
+.-++.|+..|.+.++|. +..... |+.+ +..-.++ ...++.++.+|...+..+ +-+....-+.++..++
T Consensus 780 ~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 334677888888887752 222222 3322 2222211 344555555555555544 2333344455555544
Q ss_pred -cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC
Q 009476 242 -RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV 297 (534)
Q Consensus 242 -~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~ 297 (534)
.=|-..+-+|+.+|||+++.- .+ +---.+|-..-.||..+|++||..
T Consensus 856 ~~~pe~~l~~~~~~LL~sll~l--s~-------d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 856 YKFPEECLSPHLEELLPSLLAL--SH-------DHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HcCCHHHHhhhHHHHHHHHHHH--HH-------hhhHHHHHHHHHHHHHHHHHhCHH
Confidence 346678899999999998873 22 222378999999999999999953
No 153
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.00 E-value=2.3e+02 Score=27.56 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMR 49 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmr 49 (534)
.||..-+.-..+..|+.-.+..+.+.|+--....+..|.++|-++-|
T Consensus 88 liPd~v~DYyl~k~Gf~~~D~rvKkLl~L~aqKFvsDiA~dayqYsr 134 (197)
T COG5162 88 LIPDSVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSR 134 (197)
T ss_pred CccHHHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667778899996566678888877777777777776655443
No 154
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=32.00 E-value=1.8e+02 Score=29.55 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyr---lreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
-++..|+..|+ .++++++..|++...-. +-.++..+..++...+..++|.+++..++...
T Consensus 167 il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 167 IVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 34556667788 69999999999876533 44455555556555556779999999999873
No 155
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.69 E-value=96 Score=34.93 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
+.++.+++.-|+ .++++++..|++-..-.+|.++.+.-+++.. .+++|.+||..++
T Consensus 182 ~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~V~~~l 237 (504)
T PRK14963 182 GKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Confidence 356778888999 5899999999999999999998888777654 4579999988876
No 156
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=30.00 E-value=1.3e+02 Score=32.36 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVRE---IMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlre---IiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
-++..++..|+ .+++|++..||+.++--+|+ ++.....++...+ +.+|.+.+..+|+.
T Consensus 276 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 276 ILQKKAEEEGL-ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 45667777888 69999999999998876666 4444444444444 45899999999864
No 157
>PRK04195 replication factor C large subunit; Provisional
Probab=29.83 E-value=1.2e+02 Score=33.67 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
.++.+++.-|+ .+++++...|++...-.+|.++++..++. .++.++|.+||+...
T Consensus 168 ~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 168 VLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHh--cCCCCCcHHHHHHhh
Confidence 46777788899 59999999999999989999998877633 355689999998765
No 158
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=29.60 E-value=1.2e+02 Score=33.64 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
.++.+|+.-|+ .++++++..|+..+.-.+|.++.+.-|..-... +++|.+||..++
T Consensus 188 ~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 188 KLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 44566667788 489999999999998888888888777654333 448888887766
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.98 E-value=3.6e+02 Score=23.54 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhh
Q 009476 285 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKN 364 (534)
Q Consensus 285 ~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~ 364 (534)
--|+.++--.+..-..--..|+.-.++.|.|++ ...+|=|.-+|..+- ++.+.-++|++..++..|-.-..+ .+
T Consensus 8 i~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--~rVRy~AcEaL~ni~-k~~~~~~l~~f~~IF~~L~kl~~D---~d 81 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYLDEILPPVLKCFDDQD--SRVRYYACEALYNIS-KVARGEILPYFNEIFDALCKLSAD---PD 81 (97)
T ss_pred HHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC---Cc
Confidence 335555555555455555677777888877654 445888888888884 666778899999999888776543 34
Q ss_pred hhhHHHHH
Q 009476 365 EMKRHEAW 372 (534)
Q Consensus 365 ~~~r~ea~ 372 (534)
..+|.-|+
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 55666553
No 160
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=28.60 E-value=4e+02 Score=33.57 Aligned_cols=153 Identities=19% Similarity=0.325 Sum_probs=79.3
Q ss_pred cCCChHHHHHHHHHhh-----------hcCCc--cccchhHHHHHHHH--------HhhhcCCHHH-HHHHHHHHHHhhc
Q 009476 185 SRSNSTVFKQALLSLA-----------MDSGL--HPLVPYFTYFISEE--------VTRSLKNFSL-LFALMRVARSLLR 242 (534)
Q Consensus 185 ~~~~~~~r~~AL~sL~-----------tD~gL--~qLLPYfv~FI~e~--------V~~nl~nl~~-L~~llrmv~ALl~ 242 (534)
..++...|..||..|. .|.-| .-|+|.+-++..+. .+.|+..+.. ..+.+..+++|-+
T Consensus 472 ~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~ 551 (1431)
T KOG1240|consen 472 MDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQ 551 (1431)
T ss_pred cCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666665543 34444 34788888888773 2233323322 2345667777665
Q ss_pred C-----------CCcccccchhhhHHHH---HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 009476 243 N-----------PHIHIEPYLHQMMPSV---ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRT 308 (534)
Q Consensus 243 N-----------p~L~IepYLHqLlPsv---LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~t 308 (534)
| +...-+-|+|+|+-.| ...+++. +.+ -.|.-=-+-+..+|.=||..=.+ -=|+..
T Consensus 552 ~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd---~~~-----~Vkr~Lle~i~~LC~FFGk~ksN--D~iLsh 621 (1431)
T KOG1240|consen 552 AGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD---SPP-----IVKRALLESIIPLCVFFGKEKSN--DVILSH 621 (1431)
T ss_pred cccccCcccccccccccchHHHHHHHHHHHHHHHHHcC---Cch-----HHHHHHHHHHHHHHHHhhhcccc--cchHHH
Confidence 5 1223455666665543 3333332 111 23332222366677766643221 114444
Q ss_pred HHHHhcCCCCC-chhhhhHHHHHHhh-ChhhhHhhcccchH
Q 009476 309 LLHAFLDPTKS-LSQHYGAIQGLAAL-GPSVVHLLILPNLE 347 (534)
Q Consensus 309 L~k~lldp~k~-l~t~YGAI~GL~aL-G~~aVr~lllP~L~ 347 (534)
|...|-|.+.. -++-|-.|.|++.+ |+..+...++|.|-
T Consensus 622 LiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 622 LITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ 662 (1431)
T ss_pred HHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence 44444444333 34566777777776 77777777777554
No 161
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.47 E-value=89 Score=35.19 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIY 74 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLy 74 (534)
.++.+++.-|+ .++++++..|+.-..-.+|.++...-+....+ +.++|.+||...+....-+-+|
T Consensus 186 ~l~~il~~egi-~~~~~al~~ia~~s~GslR~al~lLdq~ia~~-~~~It~~~V~~~lg~~~~~~i~ 250 (509)
T PRK14958 186 HCQHLLKEENV-EFENAALDLLARAANGSVRDALSLLDQSIAYG-NGKVLIADVKTMLGTIEPLLLF 250 (509)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCCCHHHHH
Confidence 45668888899 58999999999998888888877766655554 6789999999988655444443
No 162
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=28.33 E-value=2.2e+02 Score=29.69 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyr---lreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
-++..++..|+ .++++++..|++...-. +..+++.+..++...+..+++.+++..+++..++
T Consensus 188 il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 188 IVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 45566777788 59999999999877543 4455555555555445568999999999977544
No 163
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.19 E-value=1.3e+02 Score=35.09 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
.++.+++..|+ .++++++..|++-..-.+|.+++..-+.... +.+++|.+||..++
T Consensus 186 ~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~~-g~~~It~d~V~~~l 241 (624)
T PRK14959 186 HLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLAL-GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHh
Confidence 45666777888 5999999999998888888888877666644 44589999999887
No 164
>PRK06893 DNA replication initiation factor; Validated
Probab=27.80 E-value=1.8e+02 Score=28.78 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKC--MRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kf--mrhskR~kLt~~DIn~AL~ 66 (534)
-++..|..-|+ .+++|+...|++..+-.+|.+..---+. +.-...+++|...|..+|.
T Consensus 169 iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 169 VLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 34556667788 6999999999999985555544322222 2223223699999998875
No 165
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.54 E-value=3.9e+02 Score=27.46 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=59.5
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhHhhcccch
Q 009476 268 LGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLILPNL 346 (534)
Q Consensus 268 l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-~aVr~lllP~L 346 (534)
+|.-..++....|..|-.+|+.++.+..... |...=.+.|..-+.+.-....+.=+|+.||.+|=. ..+. -...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~---~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS---PESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC---hhhH
Confidence 4444466788999999999999999887532 33333444444444433444455566777666521 1110 1123
Q ss_pred HHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009476 347 ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (534)
Q Consensus 347 ~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (534)
..+.+.+-......+. -...|...-++...|+.--.
T Consensus 79 ~~i~~~l~~~~~~q~~-~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSL-PQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHHHHHHhCChhhh-hHHHHHHHHHHHHHHHHHhH
Confidence 3344444333332221 23346666666666665543
No 166
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=27.51 E-value=2e+02 Score=24.93 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccch
Q 009476 277 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNL 346 (534)
Q Consensus 277 w~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L 346 (534)
-.+|-.+=..|..++++.+ .-..-.++|+..++..+.|+. -..+..||.||.+|+..-=+ .++|.|
T Consensus 17 ~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~~p~-~vl~~L 82 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADRHPD-EVLPIL 82 (92)
T ss_pred cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHHChH-HHHHHH
Confidence 4689999999999999877 223345799999999998774 34456999999999765433 244443
No 167
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=27.36 E-value=2.5e+02 Score=27.57 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhh----------hcCCHHHHHHHHHH
Q 009476 167 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTR----------SLKNFSLLFALMRV 236 (534)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~----------nl~nl~~L~~llrm 236 (534)
.++.+.+.+|+++.+.+-...+-...+.++++.. .-.+.+||+.-|+.+-+.. .+-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~---~~~p~IP~lg~~l~dl~~~~e~~~~~~~~~~iN~~K~~~i~~~ 194 (237)
T cd00155 118 VLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVG---PNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEI 194 (237)
T ss_pred HCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcC---CCCCCeeehhHHHHHHHHHHccCCccCcCCCccHHHHHHHHHH
Confidence 4788889999999887643333344566776654 1237788888888773322 23366666666666
Q ss_pred HHHhhc
Q 009476 237 ARSLLR 242 (534)
Q Consensus 237 v~ALl~ 242 (534)
++.+..
T Consensus 195 i~~~~~ 200 (237)
T cd00155 195 LREIRQ 200 (237)
T ss_pred HHHHHH
Confidence 655543
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=27.21 E-value=1.3e+02 Score=34.22 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
+.++.+++.-|+ .++++++..||.-.+-.+|.++...-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-~~~It~~~V~~vl 241 (559)
T PRK05563 185 ERLKYILDKEGI-EYEDEALRLIARAAEGGMRDALSILDQAISFG-DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHh
Confidence 345677788899 59999999999988877777776666665555 5679999998876
No 169
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=27.04 E-value=2.8e+02 Score=28.79 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 20 NLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 20 ~lsdeaa~~La~dve------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
.+++++...++.-+. .++..+++.|...+...++.++|.+||..|+...
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 378888887777654 2455577788888877778899999999999876
No 170
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=27.02 E-value=3.6e+02 Score=29.52 Aligned_cols=169 Identities=24% Similarity=0.303 Sum_probs=90.6
Q ss_pred CcHHHHHH--HHHHHHHhhcCCCh------HHHHHHHHHhhhcCCccc-----cchhHHHHHHHHHhhhcCCHHHHHHHH
Q 009476 168 LSKELQLY--FDKIRELTVSRSNS------TVFKQALLSLAMDSGLHP-----LVPYFTYFISEEVTRSLKNFSLLFALM 234 (534)
Q Consensus 168 LSkElQ~Y--f~kIt~a~l~~~~~------~~r~~AL~sL~tD~gL~q-----LLPYfv~FI~e~V~~nl~nl~~L~~ll 234 (534)
.+.|+|.| |-++|..+.+.+-+ ..|+.+| |-++.|-|++ .+|+|+.|.-+ +-+++..+
T Consensus 63 i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~L-S~E~~PPIq~VIdaGvVpRfvefm~~----~q~~mlqf---- 133 (526)
T COG5064 63 IPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLL-SKETSPPIQPVIDAGVVPRFVEFMDE----IQRDMLQF---- 133 (526)
T ss_pred CchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccCCCchhHHhccccHHHHHHHHh----cchhHHHH----
Confidence 45666644 34556665542211 1233333 5577888876 58999999863 22233332
Q ss_pred HHHHHhhc-------CCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH-HhCCCchhhHHHHH
Q 009476 235 RVARSLLR-------NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT-RFGHVYQNLQSRVT 306 (534)
Q Consensus 235 rmv~ALl~-------Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~-k~~~~y~~L~~RI~ 306 (534)
..++||.. -.++-++- --+|-++..+.+. .-++|+.|-=-|+.|.- .-+-...-|+.-.+
T Consensus 134 EAaWalTNiaSGtt~QTkvVvd~---~AVPlfiqlL~s~---------~~~V~eQavWALGNiAGDS~~~RD~vL~~gal 201 (526)
T COG5064 134 EAAWALTNIASGTTQQTKVVVDA---GAVPLFIQLLSST---------EDDVREQAVWALGNIAGDSEGCRDYVLQCGAL 201 (526)
T ss_pred HHHHHHhhhccCcccceEEEEeC---CchHHHHHHHcCc---------hHHHHHHHHHHhccccCCchhHHHHHHhcCch
Confidence 33444431 12222221 2345444444332 12566666666665541 01111123455566
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHhh--Ch------hhhHhhcccchHHHHHhhhhhhh
Q 009476 307 RTLLHAFLDPTKSLSQHYGAIQGLAAL--GP------SVVHLLILPNLELYLKFLEPEML 358 (534)
Q Consensus 307 ~tL~k~lldp~k~l~t~YGAI~GL~aL--G~------~aVr~lllP~L~~y~~~Le~~l~ 358 (534)
..++..|......+...--|-+.|+.| |. ..++. .+|-|..+.-..+++..
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq-alpiL~KLiys~D~evl 260 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ-ALPILAKLIYSRDPEVL 260 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH-HHHHHHHHHhhcCHHHH
Confidence 777888775555577778888889988 43 35554 56777766666666543
No 171
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=26.49 E-value=2.9e+02 Score=33.00 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=86.2
Q ss_pred hcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhcc--------------
Q 009476 201 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSK-------------- 266 (534)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k-------------- 266 (534)
.+.++..++|-++....+.......|+.. ..-.....|..+-++-+..+++|.+. ++...
T Consensus 431 k~~ti~~llp~~~~~l~de~~~V~lnli~-----~ls~~~~v~~v~g~~~~s~slLp~i~-el~~d~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 431 KERTISELLPLLIGNLKDEDPIVRLNLID-----KLSLLEEVNDVIGISTVSNSLLPAIV-ELAEDLLWRVRLAILEYIP 504 (759)
T ss_pred cCcCccccChhhhhhcchhhHHHHHhhHH-----HHHHHHhccCcccchhhhhhhhhhhh-hhccchhHHHHHHHHHHHH
Confidence 55667777777765555543332222110 11233445556666666666666433 22221
Q ss_pred ----ccCCC-------------CCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCC-CCCchhhhhHHH
Q 009476 267 ----RLGNR-------------FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDP-TKSLSQHYGAIQ 328 (534)
Q Consensus 267 ----~l~~~-------------~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp-~k~l~t~YGAI~ 328 (534)
++|-. ..+.-.++|+.||+.+..++.+||..+.. ..++..++....++ =+.-.|.+=+|.
T Consensus 505 ~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~--~~~i~k~L~~~~q~~y~~R~t~l~si~ 582 (759)
T KOG0211|consen 505 QLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR--LEEIPKLLAMDLQDNYLVRMTTLFSIH 582 (759)
T ss_pred HHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH--HHhhHHHHHHhcCcccchhhHHHHHHH
Confidence 11211 12345689999999999999999977764 45666666666666 355667778888
Q ss_pred HHHhh-ChhhhHhhcccchHHH
Q 009476 329 GLAAL-GPSVVHLLILPNLELY 349 (534)
Q Consensus 329 GL~aL-G~~aVr~lllP~L~~y 349 (534)
-|+.+ |.+.....++|-+...
T Consensus 583 ~la~v~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 583 ELAEVLGQEITCEDLLPVFLDL 604 (759)
T ss_pred HHHHHhccHHHHHHHhHHHHHh
Confidence 77764 8899988888855543
No 172
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.47 E-value=1.4e+02 Score=34.24 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.++.++..-|+ .++++++..|+....-.++.++++.-|++... ..++|.+||...+.
T Consensus 187 ~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~LekL~~y~-~~~It~e~V~~ll~ 243 (585)
T PRK14950 187 HLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLLQQLATTY-GGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHhc
Confidence 45566777788 59999999999999888888888888877654 45799998887763
No 173
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=26.45 E-value=83 Score=35.10 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=55.1
Q ss_pred cccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 009476 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (534)
Q Consensus 165 kh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np 244 (534)
+..|++++|.+|++++.-|-+..+. - =|..+|-|||..|.+.-.....|+.-...++.++-+.+...
T Consensus 51 R~~l~~~qq~~Fe~~~~~~d~~~~~------------i-PLtFmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~ 117 (450)
T KOG3547|consen 51 RFALTESQQETFEKFVMYCDSRLDF------------I-PLTFMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGT 117 (450)
T ss_pred HHhcCHHHHHHHHHHHHHHhccccc------------c-cchHhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCC
Confidence 5679999999999999988543221 1 37889999999999988777788888888888999998884
Q ss_pred C
Q 009476 245 H 245 (534)
Q Consensus 245 ~ 245 (534)
.
T Consensus 118 d 118 (450)
T KOG3547|consen 118 D 118 (450)
T ss_pred c
Confidence 4
No 174
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=26.42 E-value=9.3e+02 Score=28.88 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhcCCCc
Q 009476 169 SKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKN--FSLLFALMRVARSLLRNPHI 246 (534)
Q Consensus 169 SkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~n--l~~L~~llrmv~ALl~Np~L 246 (534)
-+.++.||-+|++.+. ..|.++.|-.--=|..-+..++ -...-....+.+-+.+ -..-...||..- .+
T Consensus 50 G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P---~~~lLavNti~kDl~d~N~~iR~~AlR~ls------~l 119 (757)
T COG5096 50 GEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP---ELALLAVNTIQKDLQDPNEEIRGFALRTLS------LL 119 (757)
T ss_pred CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHH------hc
Confidence 3457888888888887 3455554433333444444433 3333333334443332 222222344442 23
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhH
Q 009476 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 326 (534)
Q Consensus 247 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGA 326 (534)
....-+-+++++|..|+ .+.|=..|..||-.+..+.+.=-+-|+.+- .--.++.+.. +.+.-..=-|
T Consensus 120 ~~~el~~~~~~~ik~~l---------~d~~ayVRk~Aalav~kly~ld~~l~~~~g---~~~~l~~l~~-D~dP~Vi~nA 186 (757)
T COG5096 120 RVKELLGNIIDPIKKLL---------TDPHAYVRKTAALAVAKLYRLDKDLYHELG---LIDILKELVA-DSDPIVIANA 186 (757)
T ss_pred ChHHHHHHHHHHHHHHc---------cCCcHHHHHHHHHHHHHHHhcCHhhhhccc---HHHHHHHHhh-CCCchHHHHH
Confidence 44455566777777775 355669999999999999975444444431 2223444442 2334445678
Q ss_pred HHHHHhhChh
Q 009476 327 IQGLAALGPS 336 (534)
Q Consensus 327 I~GL~aLG~~ 336 (534)
+.+|..+-++
T Consensus 187 l~sl~~i~~e 196 (757)
T COG5096 187 LASLAEIDPE 196 (757)
T ss_pred HHHHHHhchh
Confidence 8888888777
No 175
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.39 E-value=87 Score=32.79 Aligned_cols=84 Identities=27% Similarity=0.347 Sum_probs=51.4
Q ss_pred hCCCchhhHHHH--HHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhHhhc-----------------ccchH--HHHH
Q 009476 294 FGHVYQNLQSRV--TRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLI-----------------LPNLE--LYLK 351 (534)
Q Consensus 294 ~~~~y~~L~~RI--~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-~aVr~ll-----------------lP~L~--~y~~ 351 (534)
|.+.+|.....+ +-.+...++|+++++...|-|...|...|. ++|-.++ +..|. .-..
T Consensus 142 ~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~ 221 (289)
T KOG0567|consen 142 YISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIP 221 (289)
T ss_pred cccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhH
Confidence 444455433112 445778889999999999999999999966 5665432 11110 0112
Q ss_pred hhhhhhhhHhhhhhhhHHHHHHHHHHH
Q 009476 352 FLEPEMLLEKQKNEMKRHEAWRVYGAL 378 (534)
Q Consensus 352 ~Le~~l~~~~~~~~~~r~ea~~v~~al 378 (534)
.|...|.. ...+.++||||..-.|++
T Consensus 222 ~L~k~L~d-~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 222 SLIKVLLD-ETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHh-hhcchHHHHHHHHHHHhh
Confidence 22333333 345889999998877766
No 176
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=26.30 E-value=2.4e+02 Score=32.95 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 9 IEVIAQSI----GVYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 9 V~~iAes~----Gi~~lsdeaa~~La~dve-------------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
++.+++.+ ++..+++++...|.+.-. ..|.+++++|..+++..+++.++.+||..|++
T Consensus 324 ~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 324 VRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 44556665 355789999888887655 23566999999999999999999999999973
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=26.18 E-value=68 Score=35.53 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 31 PDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 31 ~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.-.-..|+.|+++|..++.+.+|..+|.+|+..|++.
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 3344568899999999999999999999999999876
No 178
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.82 E-value=98 Score=36.36 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
+.++.+++.-|+ .++++++..||+...-.+|.++...-+.+..+ +.++|.+||...+-..+.+
T Consensus 184 k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALnLLDQaIayg-~g~IT~edV~~lLG~~d~e 246 (702)
T PRK14960 184 KHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALSLTDQAIAYG-QGAVHHQDVKEMLGLIDRT 246 (702)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHhccCCHH
Confidence 345677888899 69999999999999988888888766666554 6789999999887654443
No 179
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=25.80 E-value=1.6e+02 Score=33.67 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+.++.+++.-|+ .++++++..|+....-.+|.++...-+...-+ +..+|.+||...+.
T Consensus 183 ~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~-~~~It~~~V~~~lg 240 (535)
T PRK08451 183 SHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTLLDQAIIYC-KNAITESKVADMLG 240 (535)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCCCCHHHHHHHhC
Confidence 345677788998 58999999999999888888888776666555 56789999887653
No 180
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.57 E-value=1.7e+02 Score=34.62 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
+.++.+++.-|+ .++++++..|++-..-.+|.++...-+.+..+ +.+++.+||...+...
T Consensus 185 ~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g-~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 185 DHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALSLLDQAIALG-SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHHccc
Confidence 356788899999 59999999999999888888887776666665 5689999999887554
No 181
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=24.53 E-value=2.5e+02 Score=24.73 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHHhcC--CCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHh
Q 009476 305 VTRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 382 (534)
Q Consensus 305 I~~tL~k~lld--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~ 382 (534)
|+..+...+.| ..++...+==++.+|..|=. .....+-+.++.+...|+..+.. +.-|.+|.+|..+++..+
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEI-----PELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHC
Confidence 34456666777 77888887777777776522 33333444666677777777642 245677888998888877
Q ss_pred hh
Q 009476 383 GL 384 (534)
Q Consensus 383 g~ 384 (534)
+.
T Consensus 86 ~~ 87 (107)
T PF08064_consen 86 DE 87 (107)
T ss_pred CH
Confidence 65
No 182
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=24.43 E-value=54 Score=31.45 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=54.9
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009476 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~n 69 (534)
|+-+|...|+.+-+.= .++-+.+++.+.+|.-++-.++++-..+-.+...+||+++..-|++.|...-+
T Consensus 57 l~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~d 126 (162)
T KOG1658|consen 57 LSRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVD 126 (162)
T ss_pred hhhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchH
Confidence 3445666666554432 23346789999999999999999999999999999999999999999987643
No 183
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=24.40 E-value=6.4e+02 Score=27.33 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC--CCcchHHHHHH---HHHHHHHHHHhCCCchh
Q 009476 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF--SDNHWDLRNFV---ADLIASICTRFGHVYQN 300 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~--~~~hw~LRd~A---A~lL~~I~~k~~~~y~~ 300 (534)
|++.+.+++.=.-..++|.+|+...-+.+|.-.+...+-.+....+. ......--|.+ -..|+.++..+..--.+
T Consensus 155 dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k~ 234 (356)
T PF03542_consen 155 DWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSKQ 234 (356)
T ss_pred CcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCHh
Confidence 67777777777777888888877666666666444443222221111 22334444444 45566777666655567
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh--hhhHhhcccchHHHHHhhhh
Q 009476 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP--SVVHLLILPNLELYLKFLEP 355 (534)
Q Consensus 301 L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~--~aVr~lllP~L~~y~~~Le~ 355 (534)
-+..|+++|...+.+ .. |..++.+|-- .-+...+.+.|+.++..|..
T Consensus 235 ~qd~iV~~l~~GL~s-~~-------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 235 EQDEIVRALESGLGS-KT-------AKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHhcc-Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 788999999888764 22 2333333311 12233344566666666543
No 184
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=4.3e+02 Score=30.08 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009476 278 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (534)
Q Consensus 278 ~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 357 (534)
.+|..|++.|+....-.-+..-+-++-+.......|.|+.+ ....--|+.||...-..+.-.-+-|.+..+.-++.+-.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH
Confidence 78999998888776432222334556777778888899888 77788899999887555544445666666666665554
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 009476 358 LLEKQKNEMKRHEAWRVYGALQCAAGLCVYDR 389 (534)
Q Consensus 358 ~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~ 389 (534)
.++ +...|.-|+..+|+|..-+|.--.+.
T Consensus 352 ~se---~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 352 DSE---DDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred Hhc---ChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 433 45678889999999999888754443
No 185
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=24.21 E-value=6.1e+02 Score=29.97 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCC--chhh
Q 009476 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS--LSQH 323 (534)
Q Consensus 246 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~--l~t~ 323 (534)
+...||+.+|+.-+|.-+=+|.- ..|..||.+++.|..--.+--.+=-=+=....+---++..-| ++..
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p---------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsi 666 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPP---------DVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSI 666 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHH
Q ss_pred hhHHHHHHhh-Chh----hhHhhcccchHHHHHhhhhhhhhHh--------------------------------hhhhh
Q 009476 324 YGAIQGLAAL-GPS----VVHLLILPNLELYLKFLEPEMLLEK--------------------------------QKNEM 366 (534)
Q Consensus 324 YGAI~GL~aL-G~~----aVr~lllP~L~~y~~~Le~~l~~~~--------------------------------~~~~~ 366 (534)
.|||+++..- |-. .++. |+|.|-.++..=.+...... .-|+.
T Consensus 667 l~Ai~~I~sv~~~~~mqpPi~~-ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKe 745 (975)
T COG5181 667 LKAICSIYSVHRFRSMQPPISG-ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKE 745 (975)
T ss_pred HHHHHHHhhhhcccccCCchhh-ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHH
Q ss_pred hHHHHHHHHHHHHHHhh
Q 009476 367 KRHEAWRVYGALQCAAG 383 (534)
Q Consensus 367 ~r~ea~~v~~all~a~g 383 (534)
.|--|..-+|-+-.|+|
T Consensus 746 iRR~A~~tfG~Is~aiG 762 (975)
T COG5181 746 IRRNATETFGCISRAIG 762 (975)
T ss_pred HHHhhhhhhhhHHhhcC
No 186
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.20 E-value=1.4e+03 Score=28.20 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=78.3
Q ss_pred cchhHHHHHHHHHh------hhcCCHHHHHHHHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchHHH
Q 009476 208 LVPYFTYFISEEVT------RSLKNFSLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLR 280 (534)
Q Consensus 208 LLPYfv~FI~e~V~------~nl~nl~~L~~llrmv~ALl~Np~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LR 280 (534)
-+|-++.|+.+-++ ...+|...-.--|+|+-+|. ..| .=.||-.++=- +|.--|...+ ..+---||
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~s~~~~~mE~-flv~hVfP~f----~s~~g~Lr 479 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKKSPYKSQMEY-FLVNHVFPEF----QSPYGYLR 479 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccCCchHHHHHH-HHHHHhhHhh----cCchhHHH
Confidence 34555555555554 33456655555666666655 111 22344333222 2222222222 23345799
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh-Chhh-hHhhcccchHHHHHhh
Q 009476 281 NFVADLIASIC-TRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV-VHLLILPNLELYLKFL 353 (534)
Q Consensus 281 d~AA~lL~~I~-~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL-G~~a-Vr~lllP~L~~y~~~L 353 (534)
-.|+-+++.+| -.|.. ++.-..+..--.+.|.+ ++.++..--|..+|..| ..+. ....+-||++..++.|
T Consensus 480 arac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred HHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence 99999999999 57776 44445566666677775 67788888999999887 3322 2233556666666544
No 187
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=23.81 E-value=2.4e+02 Score=28.97 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCc
Q 009476 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPL 73 (534)
++...++.+++.+|+.....+. .+..-+..|+++|.++=.-+.+- +=..|+.+++..|...+|+.+.
T Consensus 171 Lsr~~L~~L~r~~~l~~~~~~~--~lr~rL~~~~~~l~~dD~~i~~e-Gv~~Ls~~EL~~Ac~~RGl~~~ 237 (268)
T PF07766_consen 171 LSRPHLRALCRLLGLTPFGPSS--LLRRRLRKRLRYLKQDDRLIKRE-GVDSLSEEELQDACYERGLRST 237 (268)
T ss_dssp S-HHHHHHHHHHTT----SSHH--HHHHHHHHHHHHHHHHHHHHHHH--GGGS-HHHHHHHHHHTT---T
T ss_pred CCHHHHHHHHHHhccCcCCchH--HHHHHHHHHHHHHHHHHHHHHHh-ccccCCHHHHHHHHHHhCCCcC
Confidence 5667789999999998876544 37888899999999988777777 6679999999999999999765
No 188
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=23.59 E-value=1.5e+02 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcC
Q 009476 277 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 315 (534)
Q Consensus 277 w~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lld 315 (534)
|.+|..|+.-|+.| |+ ++.+..|.+++.|
T Consensus 1 ~~vR~~aa~aLg~~----~~------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQL----GD------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHc----CC------HhHHHHHHHHhcC
Confidence 78999999999987 32 4455556666554
No 189
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=23.59 E-value=3.1e+02 Score=27.08 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=45.4
Q ss_pred cCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhh----------cCCHHHHHHHHHH
Q 009476 167 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRS----------LKNFSLLFALMRV 236 (534)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~n----------l~nl~~L~~llrm 236 (534)
.|+.+....|+++.+.+-...+-...++++++... .+.+||+--|+.+-+... +-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~----~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~ 193 (242)
T smart00147 118 KLPSKYKKLFEELEELLSPERNFKNYREALSSCNL----PPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEI 193 (242)
T ss_pred HCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHH
Confidence 47888888999988865433333344556655432 789999998888743221 1266676666666
Q ss_pred HHHhh
Q 009476 237 ARSLL 241 (534)
Q Consensus 237 v~ALl 241 (534)
++.+.
T Consensus 194 i~~~~ 198 (242)
T smart00147 194 LREIR 198 (242)
T ss_pred HHHHH
Confidence 65554
No 190
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=23.06 E-value=1.8e+02 Score=33.32 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.++.+++.-|+ .++++++..||+...-.+|.++...-|....+. .++|.+||..++..
T Consensus 186 ~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alslLdklis~~~-~~It~e~V~~llg~ 243 (563)
T PRK06647 186 MLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-SDITLEQIRSKMGL 243 (563)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCCHHHHHHHhCC
Confidence 45667777798 599999999999888878888777766666655 46899988877643
No 191
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=22.71 E-value=47 Score=30.73 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHHhccCCCC
Q 009476 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRNVEP 72 (534)
Q Consensus 38 reIiqeA~Kfmrhsk--------------R~kLt~~DIn~AL~~~nvEP 72 (534)
.++|+.|++|++|-+ .|=||.+||+.||+..+-.+
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 368899999998864 34699999999999876644
No 192
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.11 E-value=7.7e+02 Score=30.19 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhcCCCccc-ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 009476 230 LFALMRVARSLLRNPHIHI-EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRT 308 (534)
Q Consensus 230 L~~llrmv~ALl~Np~L~I-epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~t 308 (534)
+...+.++.-++.|.-=.| ...+.+.+|+|..|++...--.....-.=.||-|-..-+..+|..++..-+++ .-|++.
T Consensus 634 ~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~-~yImqV 712 (1005)
T KOG2274|consen 634 CAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNL-WYIMQV 712 (1005)
T ss_pred hHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccH-HHHHHH
Confidence 3344555566666655555 33446778999888865311000001122566666666777787777766664 367777
Q ss_pred HHHHhcCCCCCchhhh--hHHHH--HHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhh
Q 009476 309 LLHAFLDPTKSLSQHY--GAIQG--LAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 384 (534)
Q Consensus 309 L~k~lldp~k~l~t~Y--GAI~G--L~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~ 384 (534)
+. .|+||..+=.+-. |-++- +..+|.+ +=||+..+++.+-. ++.+.|.-+|..-|+-+...
T Consensus 713 ~s-qLLdp~~sds~a~~VG~lV~tLit~a~~e-----l~~n~d~IL~Avis---------rmq~ae~lsviQsLi~Vfah 777 (1005)
T KOG2274|consen 713 LS-QLLDPETSDSAAAFVGPLVLTLITHASSE-----LGPNLDQILRAVIS---------RLQQAETLSVIQSLIMVFAH 777 (1005)
T ss_pred HH-HHcCCccchhHHHHHhHHHHHHHHHHHHH-----hchhHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHH
Confidence 76 7789987644321 22211 1122221 34555555444333 34456778899999999999
Q ss_pred hhhhhhhhh
Q 009476 385 CVYDRLKTV 393 (534)
Q Consensus 385 ~~~~~~~~~ 393 (534)
..+..++.+
T Consensus 778 L~~t~~~~~ 786 (1005)
T KOG2274|consen 778 LVHTDLDQL 786 (1005)
T ss_pred HhhCCHHHH
Confidence 999999998
No 193
>COG4996 Predicted phosphatase [General function prediction only]
Probab=21.98 E-value=75 Score=30.08 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhCCC--ccCHhhHHHHH---hccCCCCccCCCCCCCcccee----------------cCCCCcee
Q 009476 36 RVREIMQEAIKCMRHAHRT--VLTANDVDSAL---NLRNVEPIYGFASGDSLRFKR----------------ASGLKDLY 94 (534)
Q Consensus 36 rlreIiqeA~KfmrhskR~--kLt~~DIn~AL---~~~nvEPLyGy~s~~pl~f~~----------------~~g~~~ly 94 (534)
++..=+.+-.|.+|+++-- .+|.++-+.|+ +.+++...|-|-.-+|.+++. ...++++.
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Iv 120 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIV 120 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEE
Confidence 4445566677788888753 56777777655 456777777777666655541 13458999
Q ss_pred eecCcccChHHhhcC
Q 009476 95 YIDDKDVELRNVIET 109 (534)
Q Consensus 95 ~~eD~eVdl~~ii~~ 109 (534)
|++|+++-|.+|-+.
T Consensus 121 y~DDR~iH~~~Iwe~ 135 (164)
T COG4996 121 YLDDRRIHFGNIWEY 135 (164)
T ss_pred EEecccccHHHHHHh
Confidence 999999999987543
No 194
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=21.75 E-value=9.6e+02 Score=25.33 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=69.5
Q ss_pred HHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHH----HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCC--
Q 009476 197 LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFA----LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGN-- 270 (534)
Q Consensus 197 ~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~----llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~-- 270 (534)
.-+++... ..|++..-|..+|....++-..+.+ .-||+.+-... .=..||++.+-+++.-++....+-
T Consensus 39 ~if~~~~~---~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~tK~~~~y~k~---~G~~YL~~~L~p~I~~ii~~~~~~Ei 112 (309)
T cd05136 39 HVLQSTGK---AKDFLTDLVMAEVDRCGENERLIFRENTLATKAIEEYLKL---VGQDYLQDTLGEFIRALYESEENCEV 112 (309)
T ss_pred HHHHhcCh---HHHHHHHHHHHHHHhccccHHHHHhcCcHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHcCCCCccc
Confidence 44444443 4455566667777665433333322 34555565543 238999999999999888754321
Q ss_pred CC--------CCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcC
Q 009476 271 RF--------SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 315 (534)
Q Consensus 271 ~~--------~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lld 315 (534)
+| ..+.-.||.++..++..|+..-..-=.+|+ .|.+.+.+.+.+
T Consensus 113 DP~k~~~~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR-~i~~~lr~~~~~ 164 (309)
T cd05136 113 DPSKCSASELPDHQANLRMCCELAWCKIINSHCVFPAELR-EVFASWRERCED 164 (309)
T ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH-HHHHHHHHHHhh
Confidence 11 123457999999999999986554333555 777877777654
No 195
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=21.72 E-value=94 Score=32.93 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 35 yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
..|+.++.+|...+.+.+|..+|.+|+..|++.
T Consensus 330 ~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 330 ADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 578899999999999999999999999999864
No 196
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=21.59 E-value=1.7e+02 Score=32.09 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQ---EAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiq---eA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
-++..++..|+ .+++|++..||+.+.-.+|++.. ....++...+| .+|.+.+..+|+..
T Consensus 288 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~ 349 (450)
T PRK00149 288 ILKKKAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGK-PITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHh
Confidence 35566666788 59999999999988876666443 33334444444 59999999999753
No 197
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.44 E-value=2.7e+02 Score=28.63 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=57.2
Q ss_pred HHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc------hhhHHHHHHH
Q 009476 236 VARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY------QNLQSRVTRT 308 (534)
Q Consensus 236 mv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y------~~L~~RI~~t 308 (534)
+.+.+. +-..=.++.+++.++|++|+.+ +|..-..|-.+..+|.+++.+....- .++-.=+.+.
T Consensus 100 l~w~v~~~~~~~~i~~~~~liiP~iL~ll---------DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~a 170 (282)
T PF10521_consen 100 LSWIVLSQLDRPWISQHWPLIIPPILNLL---------DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDA 170 (282)
T ss_pred HHHHHHhcCCcchHHHhhhHHHhhHHHHh---------cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHH
Confidence 334444 4455578899999999999985 33455789999999999998765433 3344444555
Q ss_pred HHHHhc--------CCC-CCchhhhhHHHHHHhh
Q 009476 309 LLHAFL--------DPT-KSLSQHYGAIQGLAAL 333 (534)
Q Consensus 309 L~k~ll--------dp~-k~l~t~YGAI~GL~aL 333 (534)
+.+.+. +.. .-+..-|.++..|...
T Consensus 171 l~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 171 LFPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 555554 111 1245667777777543
No 198
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.44 E-value=8.4e+02 Score=25.02 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhh-------hcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHH
Q 009476 187 SNSTVFKQALLSLA-------MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSV 259 (534)
Q Consensus 187 ~~~~~r~~AL~sL~-------tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsv 259 (534)
+|...|..|+..|+ .|.=-.+=+-.++.|+.+ .+.|...+...++-+.||+..+++.-+- ... +
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~----rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~----i 81 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCS----RLDDHACVQPALKGLLALVKMKNFSPES-AVK----I 81 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHhCcCCChhh-HHH----H
Confidence 45555666654433 332122334445555554 4567777777788889999877754433 333 3
Q ss_pred HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc
Q 009476 260 ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (534)
Q Consensus 260 LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 314 (534)
+.-+....-. ...--.-|...=++|..+..+|.....++-.-.+..+.+..-
T Consensus 82 ~~~l~~~~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~ 133 (262)
T PF14500_consen 82 LRSLFQNVDV---QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID 133 (262)
T ss_pred HHHHHHhCCh---hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc
Confidence 3333221111 111224577777777777777665555555556666666543
No 199
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=21.22 E-value=1.4e+02 Score=22.59 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH-HHHHHHhCCCccCHhhHHHH
Q 009476 33 VEYRVREIMQEA-IKCMRHAHRTVLTANDVDSA 64 (534)
Q Consensus 33 veyrlreIiqeA-~KfmrhskR~kLt~~DIn~A 64 (534)
+=+.+|.-++.+ =++++..+.+.+|.++++.|
T Consensus 12 iP~fvR~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 12 IPFFVRKKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp S-HHHHHHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 445555555544 48999999999999999876
No 200
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.21 E-value=1.1e+02 Score=27.82 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHH
Q 009476 287 IASICTRFGHVYQNLQSRVTRTLLHA 312 (534)
Q Consensus 287 L~~I~~k~~~~y~~L~~RI~~tL~k~ 312 (534)
|..+-+.+|-+||+++.|+-+.+.+.
T Consensus 52 lKe~e~~lgiSYPTvR~rLd~ii~~l 77 (113)
T PF09862_consen 52 LKEMEKELGISYPTVRNRLDKIIEKL 77 (113)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHh
Confidence 56677899999999999988866555
No 201
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=21.16 E-value=2e+02 Score=31.69 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYR-V---REIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyr-l---reIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
|+.=|+.-+| .|+|+|...|+.-=+.. | -+++.-|..++...+++++..+||+.|-+.
T Consensus 370 i~iRa~ee~i-~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 370 IRIRAKEEDI-ELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHhhhhhcc-ccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 3444677888 59999999999865432 4 456668889999999999999999999876
No 202
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.92 E-value=1.9e+02 Score=33.02 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
.++.+++.-|+ .++++++..|+.-..-.+|.++...-|.+..++ .++|.+||...+
T Consensus 186 ~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~Ldqliay~g-~~It~edV~~ll 241 (576)
T PRK14965 186 RLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTLDQVLAFCG-DAVGDDDVAELL 241 (576)
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHh
Confidence 45667778898 599999999999999888888888777777766 469999998664
No 203
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=20.63 E-value=4.6e+02 Score=27.64 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=67.8
Q ss_pred cccchhHHHHHHHHHhhhc------CCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccC-C-CC-----
Q 009476 206 HPLVPYFTYFISEEVTRSL------KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLG-N-RF----- 272 (534)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl------~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~-~-~~----- 272 (534)
..+.+++-..+..+|...- +.......+|.....++. ..||+..+.+++.=++...-+ . .+
T Consensus 69 ~~~~~~L~~li~~Ei~~~~~~~~lfR~Nsl~tk~l~~y~k~~g------~~yL~~~l~~~i~~i~~~~~~~e~dp~k~~~ 142 (344)
T smart00323 69 GRGHPFLRALIDPEVERTDDPNTIFRGNSLATKSMEVYMKLVG------NQYLHTTLKPVLKKIVESKKSCEVDPAKLEG 142 (344)
T ss_pred CcHHHHHHHHHHHHHHcCCcHhhHhhhccHhHHHHHHHHHHHh------HHHHHHHHHHHHHHHHcCCCCCCcChhhcCh
Confidence 4567777777888887621 233445555655555544 388988888888777664321 1 11
Q ss_pred ---CCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcC--CCCCchhhhhHHHHHH
Q 009476 273 ---SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD--PTKSLSQHYGAIQGLA 331 (534)
Q Consensus 273 ---~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lld--p~k~l~t~YGAI~GL~ 331 (534)
..+...||+++..++..|+..... .|.---.|.+.+.+.+.. |.. ...|.+|-|+.
T Consensus 143 ~~~~~n~~~L~~~~~~~~~~I~~s~~~-~P~~lr~i~~~l~~~~~~kfp~~--~~~~~~v~~fi 203 (344)
T smart00323 143 EDLETNLENLLQYVERLFDAIINSSDR-LPYGLRDICKQLRQAAEKRFPDA--DVIYKAVSSFV 203 (344)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHh-CcHHHHHHHHHHHHHHHHHCCCc--ccchhHHHHHH
Confidence 124568899999999999875543 332222455555554432 121 34555555543
No 204
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=20.43 E-value=2.2e+02 Score=31.45 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR----TVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~-~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR----~kLt~~DIn~AL~~ 67 (534)
-++..++..|+. .+++|++..||+...--+|++..-..++...+.. +.+|.+.+..+|+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 455666777863 6999999999999998888887776666544422 56999999999864
No 205
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.42 E-value=2.2e+02 Score=32.63 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.++.+++..|+ .++++++..|++...-.+|.++...-+.+..+. ..+|.+||..++..
T Consensus 186 ~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 186 QLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHHcc
Confidence 45677777898 699999999999998888888887777776665 67999999998864
No 206
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=20.42 E-value=2.3e+02 Score=32.87 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHH
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~A 64 (534)
.++.+++.-|+ .++++++..|++-..-.+|.+++..-++...+++. +|.+||...
T Consensus 186 ~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~-It~e~V~el 240 (605)
T PRK05896 186 LLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSE-IDIEDINKT 240 (605)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCC-CCHHHHHHH
Confidence 45666667788 59999999999999888888888888877776643 888776663
No 207
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=20.41 E-value=2.7e+02 Score=28.59 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEY-----------------RVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dvey-----------------rlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+++.||-++++.+|.+..+| .-..|++.+.. -+.+++......+++. .+.+..++++.|..
T Consensus 48 VS~aTv~Rf~~kLGf~Gf~e-fk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t-~~~l~~~~l~~av~ 125 (281)
T COG1737 48 VSPATVVRFARKLGFEGFSE-FKLALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERT-LNLLDEEALERAVE 125 (281)
T ss_pred CCHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhccchhhcccCCCCCHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 68899999999999999885 33334444422 4677777777777777 45789999999998
Q ss_pred ccC-CCC--ccCCCCCCC
Q 009476 67 LRN-VEP--IYGFASGDS 81 (534)
Q Consensus 67 ~~n-vEP--LyGy~s~~p 81 (534)
++. -+- +||.+++.+
T Consensus 126 ~L~~A~rI~~~G~g~S~~ 143 (281)
T COG1737 126 LLAKARRIYFFGLGSSGL 143 (281)
T ss_pred HHHcCCeEEEEEechhHH
Confidence 853 343 457665543
No 208
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.23 E-value=2.1e+02 Score=33.25 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
+.++.+++.-|+ .++++++..|+...+-.+|.++...-+.+..+ ..++|.++|...|
T Consensus 190 ~~L~~i~~~egi-~ie~~AL~~La~~s~GslR~al~lLdq~ia~~-~~~It~~~V~~~L 246 (618)
T PRK14951 190 EHLTQVLAAENV-PAEPQALRLLARAARGSMRDALSLTDQAIAFG-SGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHH
Confidence 345677788899 59999999999988888888888766666555 4579999998877
Done!