Query 009476
Match_columns 534
No_of_seqs 170 out of 319
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 5.5E-59 1.9E-63 448.3 20.9 183 165-357 2-184 (196)
2 1taf_B TFIID TBP associated fa 99.9 1.2E-24 4E-29 177.1 9.8 67 1-67 4-70 (70)
3 2hue_C Histone H4; mini beta s 99.7 5.7E-18 2E-22 142.5 7.1 75 3-78 10-84 (84)
4 1id3_B Histone H4; nucleosome 99.7 2.9E-17 9.8E-22 143.0 8.1 75 3-78 28-102 (102)
5 2yfw_B Histone H4, H4; cell cy 99.6 2.2E-16 7.4E-21 137.7 7.4 75 3-78 29-103 (103)
6 1tzy_D Histone H4-VI; histone- 99.6 2.7E-16 9.3E-21 137.0 7.7 74 4-78 30-103 (103)
7 1ku5_A HPHA, archaeal histon; 99.2 4.1E-11 1.4E-15 97.1 8.4 67 1-67 4-70 (70)
8 2ly8_A Budding yeast chaperone 99.0 5.3E-10 1.8E-14 99.7 6.7 61 16-77 60-120 (121)
9 1f1e_A Histone fold protein; a 98.9 2.9E-09 9.9E-14 98.8 9.3 72 1-72 2-74 (154)
10 2l5a_A Histone H3-like centrom 98.9 4.1E-10 1.4E-14 110.2 1.8 68 9-77 167-234 (235)
11 1b67_A Protein (histone HMFA); 98.8 1.2E-08 4E-13 82.0 9.1 67 2-68 1-67 (68)
12 1taf_A TFIID TBP associated fa 98.7 3E-08 1E-12 80.1 8.6 62 7-68 5-66 (68)
13 3b0c_T CENP-T, centromere prot 98.7 2.9E-08 1E-12 87.5 7.8 68 3-70 7-74 (111)
14 1f1e_A Histone fold protein; a 98.6 8.1E-08 2.8E-12 89.1 8.6 65 3-67 82-146 (154)
15 1n1j_A NF-YB; histone-like PAI 98.4 1.1E-06 3.8E-11 74.7 9.2 68 3-70 8-77 (93)
16 3b0c_W CENP-W, centromere prot 98.4 8.2E-07 2.8E-11 73.0 7.7 65 3-67 4-69 (76)
17 2hue_B Histone H3; mini beta s 98.3 2.2E-06 7.6E-11 70.8 8.6 70 1-70 1-75 (77)
18 4dra_A Centromere protein S; D 98.3 6.2E-07 2.1E-11 79.0 5.5 60 8-67 32-94 (113)
19 3b0b_B CENP-S, centromere prot 98.3 8.6E-07 2.9E-11 77.6 6.1 60 8-67 24-86 (107)
20 3nqj_A Histone H3-like centrom 98.2 3E-06 1E-10 70.8 8.2 71 1-71 1-78 (82)
21 3v9r_A MHF1, uncharacterized p 98.1 7.5E-06 2.6E-10 69.5 8.3 59 8-67 17-79 (90)
22 1jfi_B DR1 protein, transcript 98.0 2.3E-05 7.8E-10 74.3 9.4 69 3-71 15-84 (179)
23 3vh5_A CENP-S; histone fold, c 98.0 6.9E-06 2.3E-10 74.7 5.4 58 9-67 25-86 (140)
24 2byk_B Chrac-14; nucleosome sl 97.9 2.2E-05 7.6E-10 70.7 8.0 68 3-70 9-78 (128)
25 1n1j_B NF-YC; histone-like PAI 97.9 3.5E-05 1.2E-09 66.1 7.8 67 2-68 18-85 (97)
26 3nqu_A Histone H3-like centrom 97.7 4.9E-05 1.7E-09 69.3 7.2 69 4-72 62-137 (140)
27 2yfv_A Histone H3-like centrom 97.7 6.9E-05 2.4E-09 64.8 7.6 65 3-67 27-99 (100)
28 2nqb_C Histone H2A; nucleosome 97.7 8.3E-05 2.8E-09 66.6 7.9 65 3-67 23-88 (123)
29 2f8n_G Core histone macro-H2A. 97.7 8E-05 2.7E-09 66.4 7.8 65 3-67 22-87 (120)
30 1tzy_C Histone H3; histone-fol 97.7 0.00012 4E-09 66.6 8.5 68 3-70 62-134 (136)
31 1tzy_A Histone H2A-IV; histone 97.6 0.00012 4.1E-09 66.0 7.9 65 3-67 25-90 (129)
32 2f8n_K Histone H2A type 1; nuc 97.6 0.00011 3.8E-09 67.7 7.4 65 3-67 44-109 (149)
33 3r45_A Histone H3-like centrom 97.6 4.4E-05 1.5E-09 70.5 4.5 68 3-70 77-151 (156)
34 1ibr_B P95, importin beta-1 su 97.5 0.0034 1.2E-07 63.8 18.5 129 247-385 314-442 (462)
35 1id3_C Histone H2A.1; nucleoso 97.5 0.00012 4.2E-09 66.1 6.7 65 3-67 25-90 (131)
36 1jfi_A Transcription regulator 97.5 0.00011 3.8E-09 63.1 5.7 65 3-67 11-76 (98)
37 1f66_C Histone H2A.Z; nucleoso 97.4 0.00029 9.8E-09 63.5 7.1 65 3-67 27-93 (128)
38 4g92_C HAPE; transcription fac 97.3 0.0005 1.7E-08 61.1 7.7 66 3-68 41-107 (119)
39 4fdd_A Transportin-1; heat rep 97.3 0.0051 1.7E-07 69.1 17.4 197 175-383 216-432 (852)
40 2bpt_A Importin beta-1 subunit 97.2 0.0069 2.4E-07 66.9 17.1 180 190-385 346-534 (861)
41 2jss_A Chimera of histone H2B. 97.2 0.00076 2.6E-08 64.5 8.1 65 3-67 105-171 (192)
42 1qgr_A Protein (importin beta 97.1 0.0038 1.3E-07 69.2 13.7 180 190-384 343-541 (876)
43 2bpt_A Importin beta-1 subunit 97.1 0.016 5.6E-07 63.9 18.3 127 248-384 318-444 (861)
44 2qk2_A LP04448P; mini spindles 97.0 0.017 5.7E-07 55.0 15.0 129 230-385 78-210 (242)
45 2nqb_D Histone H2B; nucleosome 96.7 0.0034 1.2E-07 55.9 7.3 61 8-68 38-99 (123)
46 4fdd_A Transportin-1; heat rep 96.7 0.022 7.5E-07 64.0 15.9 173 195-385 344-517 (852)
47 1tzy_B Histone H2B; histone-fo 96.6 0.0045 1.5E-07 55.3 7.4 61 8-68 41-102 (126)
48 1qgr_A Protein (importin beta 96.6 0.038 1.3E-06 61.1 16.6 115 230-357 625-743 (876)
49 2qk1_A Protein STU2; STU2P, XM 96.4 0.089 3E-06 51.2 16.1 190 175-385 21-225 (249)
50 2qk2_A LP04448P; mini spindles 96.3 0.038 1.3E-06 52.5 12.6 108 173-296 97-209 (242)
51 2byk_A Chrac-16; nucleosome sl 95.9 0.0063 2.1E-07 55.5 4.7 66 3-68 19-86 (140)
52 2jss_A Chimera of histone H2B. 95.6 0.033 1.1E-06 53.1 8.3 60 8-67 8-68 (192)
53 1u6g_C TIP120 protein, CAND1; 95.4 0.43 1.5E-05 55.7 18.8 120 228-357 492-619 (1230)
54 1h3o_B Transcription initiatio 95.3 0.096 3.3E-06 43.0 9.0 65 3-67 5-70 (76)
55 1bh9_B TAFII28; histone fold, 95.0 0.11 3.7E-06 43.9 8.6 68 2-69 15-83 (89)
56 1u6g_C TIP120 protein, CAND1; 94.9 0.67 2.3E-05 54.1 18.1 192 176-387 8-211 (1230)
57 1b3u_A Protein (protein phosph 94.4 0.73 2.5E-05 48.1 15.4 96 274-383 175-274 (588)
58 1b3u_A Protein (protein phosph 94.3 0.76 2.6E-05 47.9 15.3 115 252-385 439-553 (588)
59 1ibr_B P95, importin beta-1 su 94.0 0.19 6.6E-06 50.7 9.7 95 190-296 343-441 (462)
60 2l5a_A Histone H3-like centrom 93.7 0.12 4.2E-06 50.6 7.2 64 7-70 19-86 (235)
61 4dra_E Centromere protein X; D 91.7 0.85 2.9E-05 38.1 8.6 63 3-66 12-78 (84)
62 2qk1_A Protein STU2; STU2P, XM 91.6 1.8 6.2E-05 41.8 12.4 144 175-333 61-218 (249)
63 2x1g_F Cadmus; transport prote 90.4 2.6 8.9E-05 47.9 14.1 148 195-358 444-594 (971)
64 2x19_B Importin-13; nuclear tr 90.3 2.4 8.2E-05 47.9 13.7 137 206-358 440-578 (963)
65 2of3_A ZYG-9; multifunctional 89.9 7 0.00024 38.9 15.0 141 225-391 99-247 (266)
66 3b0b_C CENP-X, centromere prot 89.7 1.2 4.1E-05 36.9 7.7 63 3-66 8-74 (81)
67 1h3o_A Transcription initiatio 89.2 0.26 9E-06 40.3 3.3 44 8-51 11-54 (75)
68 1wa5_C Importin alpha RE-expor 87.4 8 0.00028 44.1 15.4 148 195-358 384-558 (960)
69 4hat_C Exportin-1; heat repeat 87.1 0.79 2.7E-05 53.7 6.9 158 193-358 434-599 (1023)
70 4db8_A Armadillo-repeat protei 87.0 2.5 8.5E-05 39.2 9.1 142 176-335 14-167 (252)
71 4hxt_A De novo protein OR329; 86.4 2.7 9.1E-05 38.5 8.9 111 208-335 45-157 (252)
72 4db6_A Armadillo repeat protei 85.9 3.8 0.00013 36.9 9.6 141 175-333 13-165 (210)
73 1wa5_B Importin alpha subunit; 85.9 4.2 0.00014 42.7 11.2 111 207-334 215-327 (530)
74 2vgl_B AP-2 complex subunit be 84.6 12 0.00042 40.2 14.4 76 248-336 115-190 (591)
75 1wa5_B Importin alpha subunit; 84.5 14 0.00047 38.6 14.4 112 206-334 172-285 (530)
76 2jdq_A Importin alpha-1 subuni 83.4 14 0.00047 37.0 13.3 112 207-335 149-263 (450)
77 2jdq_A Importin alpha-1 subuni 82.9 11 0.00036 37.8 12.3 140 178-334 153-304 (450)
78 4ffb_C Protein STU2; tubulin f 82.6 6.3 0.00022 38.0 10.1 81 225-314 151-242 (278)
79 4ffb_C Protein STU2; tubulin f 82.5 16 0.00056 35.0 13.0 145 226-386 68-218 (278)
80 1wa5_C Importin alpha RE-expor 82.5 3.5 0.00012 47.1 9.4 103 228-333 307-432 (960)
81 4db8_A Armadillo-repeat protei 82.2 2.9 9.9E-05 38.8 7.2 110 208-334 97-208 (252)
82 1w63_A Adapter-related protein 81.9 15 0.00052 39.9 13.8 139 175-337 351-492 (618)
83 2vgl_B AP-2 complex subunit be 81.3 4.6 0.00016 43.6 9.4 159 189-387 332-493 (591)
84 4hxt_A De novo protein OR329; 80.1 6.1 0.00021 36.0 8.6 110 208-334 87-198 (252)
85 2iw3_A Elongation factor 3A; a 80.0 59 0.002 38.0 18.4 176 195-393 37-214 (986)
86 3m1i_C Exportin-1; heat repeat 79.2 28 0.00095 40.1 15.5 85 247-334 384-481 (1049)
87 3uk6_A RUVB-like 2; hexameric 78.2 7.1 0.00024 38.8 9.0 58 9-67 268-329 (368)
88 1oyz_A Hypothetical protein YI 78.2 36 0.0012 32.0 13.6 54 276-335 104-157 (280)
89 3ltj_A Alpharep-4; protein eng 77.9 37 0.0013 30.1 14.7 49 275-335 88-136 (201)
90 2x19_B Importin-13; nuclear tr 77.3 20 0.0007 40.3 13.4 87 232-334 512-602 (963)
91 2x1g_F Cadmus; transport prote 77.2 9.9 0.00034 43.1 10.8 85 230-331 527-614 (971)
92 3ltm_A Alpha-REP4; protein eng 76.2 43 0.0015 30.0 14.1 50 274-335 123-172 (211)
93 1xqr_A HSPBP1 protein; armadil 76.1 64 0.0022 31.9 15.3 158 207-387 124-287 (296)
94 4b8j_A Importin subunit alpha- 75.8 23 0.00079 36.8 12.5 153 206-381 243-401 (528)
95 3bos_A Putative DNA replicatio 74.4 4.9 0.00017 36.8 6.1 57 8-66 182-241 (242)
96 1jr3_D DNA polymerase III, del 74.2 2.7 9.3E-05 41.9 4.6 61 7-68 149-209 (343)
97 1vsy_5 Proteasome activator BL 73.7 1.9 6.6E-05 50.4 3.8 121 226-357 815-947 (997)
98 3ltm_A Alpha-REP4; protein eng 73.5 50 0.0017 29.5 13.1 122 176-336 21-142 (211)
99 2chg_A Replication factor C sm 72.9 6.4 0.00022 35.1 6.4 55 9-66 170-224 (226)
100 2vgl_A Adaptor protein complex 72.8 39 0.0013 36.9 13.8 78 249-337 141-218 (621)
101 4b8j_A Importin subunit alpha- 72.0 37 0.0013 35.2 12.9 112 207-334 160-272 (528)
102 3ltj_A Alpharep-4; protein eng 69.1 61 0.0021 28.6 12.8 52 274-337 118-169 (201)
103 3m1i_C Exportin-1; heat repeat 69.0 40 0.0014 38.8 13.4 155 194-358 435-599 (1049)
104 3gs3_A Symplekin, LD45768P; he 66.5 1E+02 0.0035 30.2 14.3 131 228-378 31-171 (257)
105 3kw6_A 26S protease regulatory 65.9 6 0.0002 31.2 4.1 42 26-67 27-72 (78)
106 3ksy_A SOS-1, SON of sevenless 64.3 15 0.00052 43.0 8.7 64 4-67 105-168 (1049)
107 1oyz_A Hypothetical protein YI 63.8 96 0.0033 29.0 18.2 50 274-335 139-188 (280)
108 1in4_A RUVB, holliday junction 63.6 15 0.00052 36.6 7.5 63 8-71 188-253 (334)
109 1njg_A DNA polymerase III subu 63.4 11 0.00036 33.9 5.8 56 9-66 194-249 (250)
110 2dzn_B 26S protease regulatory 61.8 7.8 0.00027 31.0 4.1 34 35-68 35-68 (82)
111 4db6_A Armadillo repeat protei 57.7 19 0.00066 32.1 6.5 136 177-334 57-208 (210)
112 3vlf_B 26S protease regulatory 53.8 14 0.00049 30.0 4.4 44 26-69 25-72 (88)
113 2krk_A 26S protease regulatory 53.5 13 0.00044 30.3 4.1 33 35-67 48-80 (86)
114 3aji_B S6C, proteasome (prosom 50.5 9.5 0.00033 30.3 2.8 42 27-68 26-71 (83)
115 3o2t_A Symplekin; heat repeat, 48.6 2.4E+02 0.0084 29.2 13.8 132 228-379 41-182 (386)
116 2c9o_A RUVB-like 1; hexameric 48.6 46 0.0016 34.7 8.4 59 9-68 375-437 (456)
117 4hat_C Exportin-1; heat repeat 48.2 1.9E+02 0.0066 33.6 14.3 145 233-392 524-688 (1023)
118 2z6h_A Catenin beta-1, beta-ca 48.0 78 0.0027 34.0 10.4 116 187-316 26-152 (644)
119 3u0r_A Apoptosis inhibitor 5; 47.0 2E+02 0.0069 31.1 13.0 167 160-341 162-364 (507)
120 2v1u_A Cell division control p 46.5 57 0.0019 31.9 8.3 64 5-68 202-276 (387)
121 1sxj_D Activator 1 41 kDa subu 44.4 15 0.0005 36.0 3.6 57 9-66 201-261 (353)
122 2z6g_A B-catenin; FULL-length, 44.1 69 0.0024 35.8 9.4 117 186-316 161-288 (780)
123 1jdh_A Beta-catenin; beta-cate 43.3 1E+02 0.0036 31.3 10.0 140 176-332 19-169 (529)
124 1g8p_A Magnesium-chelatase 38 42.5 77 0.0026 30.7 8.6 50 17-67 265-321 (350)
125 3a6p_A Exportin-5; exportin-5, 42.1 1.5E+02 0.005 35.0 12.2 160 230-405 510-682 (1204)
126 2vgl_A Adaptor protein complex 41.9 1.5E+02 0.0052 32.2 11.6 143 173-339 367-513 (621)
127 3a6p_A Exportin-5; exportin-5, 40.6 5.1E+02 0.018 30.4 17.9 89 201-295 345-455 (1204)
128 2qz4_A Paraplegin; AAA+, SPG7, 39.3 15 0.00053 34.2 2.8 59 8-67 185-248 (262)
129 1jr3_A DNA polymerase III subu 39.0 40 0.0014 33.1 5.9 57 8-66 186-242 (373)
130 3h4m_A Proteasome-activating n 38.8 24 0.00083 33.5 4.1 43 26-68 212-258 (285)
131 2z6g_A B-catenin; FULL-length, 38.8 37 0.0013 38.0 6.2 94 226-334 373-471 (780)
132 3ibv_A Exportin-T; karyopherin 38.7 2.1E+02 0.007 33.1 12.5 97 206-314 485-588 (980)
133 2qby_A CDC6 homolog 1, cell di 38.7 1.3E+02 0.0045 29.1 9.6 50 19-68 217-272 (386)
134 1te4_A Conserved protein MTH18 37.9 20 0.00068 30.2 3.0 51 274-336 53-103 (131)
135 3k1j_A LON protease, ATP-depen 36.6 62 0.0021 35.1 7.4 50 18-67 312-374 (604)
136 3v9r_B MHF2, uncharacterized p 35.3 48 0.0016 27.7 4.7 62 4-66 2-74 (88)
137 3opb_A SWI5-dependent HO expre 35.3 2.9E+02 0.0099 31.5 12.6 141 227-380 471-635 (778)
138 3gjx_A Exportin-1; transport, 35.0 1.5E+02 0.0051 34.9 10.6 120 274-393 577-715 (1073)
139 1sxj_B Activator 1 37 kDa subu 34.6 74 0.0025 30.2 6.9 56 8-66 174-229 (323)
140 1jdh_A Beta-catenin; beta-cate 34.6 64 0.0022 32.9 6.8 98 226-334 240-338 (529)
141 1w63_A Adapter-related protein 34.1 4.6E+02 0.016 28.0 16.2 118 205-336 217-343 (618)
142 2chq_A Replication factor C sm 32.8 46 0.0016 31.7 5.0 55 8-65 169-223 (319)
143 2db0_A 253AA long hypothetical 32.6 3.5E+02 0.012 26.1 11.4 80 278-371 122-201 (253)
144 2qby_B CDC6 homolog 3, cell di 31.4 98 0.0034 30.3 7.3 63 4-68 197-270 (384)
145 2r44_A Uncharacterized protein 28.6 1.8E+02 0.0063 28.1 8.7 50 17-67 224-296 (331)
146 3ff5_A PEX14P, peroxisomal bio 28.1 45 0.0015 25.4 3.1 29 38-66 10-52 (54)
147 3ibv_A Exportin-T; karyopherin 27.7 2.3E+02 0.0077 32.8 10.4 182 167-358 371-588 (980)
148 3ip4_C Aspartyl/glutamyl-tRNA( 27.7 1.1E+02 0.0037 25.6 5.9 38 1-39 1-38 (100)
149 2ly8_A Budding yeast chaperone 27.4 91 0.0031 27.5 5.4 47 8-54 10-60 (121)
150 3pfi_A Holliday junction ATP-d 27.1 1.1E+02 0.0037 29.8 6.7 62 8-70 192-256 (338)
151 3ul1_B Importin subunit alpha- 26.8 5.4E+02 0.019 26.5 14.9 139 176-333 59-217 (510)
152 1fnn_A CDC6P, cell division co 26.5 2.2E+02 0.0076 27.7 8.9 49 20-68 214-274 (389)
153 3tjz_B Coatomer subunit gamma; 26.1 1.2E+02 0.0041 31.1 7.0 157 167-351 131-297 (355)
154 3mn2_A Probable ARAC family tr 26.1 1.6E+02 0.0053 23.8 6.6 60 8-79 20-84 (108)
155 3a1y_A 50S ribosomal protein P 25.3 87 0.003 23.9 4.4 40 4-44 17-57 (58)
156 1l8q_A Chromosomal replication 24.9 45 0.0016 32.5 3.4 57 9-67 175-239 (324)
157 3d8b_A Fidgetin-like protein 1 24.7 1.1E+02 0.0038 30.6 6.3 60 8-68 259-334 (357)
158 1lv7_A FTSH; alpha/beta domain 24.4 72 0.0025 29.8 4.7 43 26-68 206-252 (257)
159 2z4s_A Chromosomal replication 24.4 65 0.0022 33.5 4.7 58 9-68 272-332 (440)
160 1ixz_A ATP-dependent metallopr 24.1 61 0.0021 30.3 4.1 46 21-66 204-254 (254)
161 3kfu_G Glutamyl-tRNA(Gln) amid 24.1 1.4E+02 0.0049 24.5 5.9 37 1-39 4-40 (92)
162 4b4t_J 26S protease regulatory 23.6 64 0.0022 33.9 4.4 42 26-67 343-388 (405)
163 1hqc_A RUVB; extended AAA-ATPa 23.5 85 0.0029 30.1 5.1 60 9-69 177-239 (324)
164 2w84_A Peroxisomal membrane pr 23.5 41 0.0014 27.0 2.2 32 39-70 16-61 (70)
165 4b4t_I 26S protease regulatory 22.4 69 0.0024 34.0 4.4 42 26-67 377-422 (437)
166 1iy2_A ATP-dependent metallopr 22.1 69 0.0024 30.5 4.1 47 20-66 227-278 (278)
167 3b9p_A CG5977-PA, isoform A; A 22.1 1.2E+02 0.0041 28.8 5.8 58 9-67 198-271 (297)
168 2z6h_A Catenin beta-1, beta-ca 22.0 7.2E+02 0.025 26.3 14.2 98 226-334 237-335 (644)
169 1te4_A Conserved protein MTH18 21.6 1.1E+02 0.0039 25.3 4.9 57 255-332 74-130 (131)
170 4b4t_L 26S protease subunit RP 20.8 78 0.0027 33.4 4.4 42 26-67 376-421 (437)
171 4fqn_A Malcavernin; helical do 20.8 43 0.0015 28.5 1.9 62 470-531 13-82 (98)
172 3bl2_A V-BCL-2; protein-protei 20.7 1.3E+02 0.0044 26.1 4.9 42 299-345 61-102 (131)
173 1iqp_A RFCS; clamp loader, ext 20.6 87 0.003 29.8 4.4 54 9-65 178-231 (327)
174 4b4t_H 26S protease regulatory 20.5 80 0.0027 33.8 4.4 41 27-67 405-449 (467)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=5.5e-59 Score=448.29 Aligned_cols=183 Identities=37% Similarity=0.632 Sum_probs=177.9
Q ss_pred cccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 009476 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (534)
Q Consensus 165 kh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np 244 (534)
||+||+|+|+||++||++|++ ..|++||++|++|||||||+|||++||+++|++|++|+..|.++|+|++||++||
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999997 4689999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhh
Q 009476 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (534)
Q Consensus 245 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~Y 324 (534)
+++||||+|||||++|||+|++++|+. +|||+||++|+.||++||++|++|++||+++|.|+|+||++|+++||
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009476 325 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (534)
Q Consensus 325 GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 357 (534)
|||+||++||++|||.+|+|+++.|++.++..-
T Consensus 152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~~ 184 (196)
T 4atg_A 152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKKK 184 (196)
T ss_dssp HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999987654
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.91 E-value=1.2e-24 Score=177.07 Aligned_cols=67 Identities=43% Similarity=0.610 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
|++||.++|++||||+|+++||||+++.||+|||||++||+|+|+|||+|+||++||++|||.||+.
T Consensus 4 ~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 4 GSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp SCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999974
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.72 E-value=5.7e-18 Score=142.51 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s 78 (534)
.+|+++|+++|++.|+.++|+++...|++++++++++|+++|.+||+|+||+++|++||..||+.++ +|+|||.+
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999886 89999974
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.69 E-value=2.9e-17 Score=143.02 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s 78 (534)
.||+++|+++|++.|+.++|+++...|++++|+++.+|+++|++||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~~ 102 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 102 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CCEESSCC
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999886 79999974
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.64 E-value=2.2e-16 Score=137.70 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s 78 (534)
.||.++|+++|++.|+.++++++...|++++||++.+|+++|.+||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 89999963
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.64 E-value=2.7e-16 Score=137.03 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009476 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s 78 (534)
||.++|+++|++.|+.++++++...|++++||++.+|+++|.+||+|+||+++|++||..||+.++ +|+|||.+
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 1tzy_D 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CEEESCCC
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC-CCCcCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999987 79999963
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.20 E-value=4.1e-11 Score=97.13 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
|+.+|..+|++++++.|..++++++...|++.+++++.+|+++|..|++|+||++++++||..|++.
T Consensus 4 ~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp -CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999999999999999999999999999873
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=5.3e-10 Score=99.74 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=59.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009476 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (534)
Q Consensus 16 ~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~ 77 (534)
.|+.++|+++.+.+.+.++.++.+|+++|++++.|++||++|++||..||+..|. |+|||+
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~ 120 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFG 120 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCC
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999 999997
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.92 E-value=2.9e-09 Score=98.82 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCC
Q 009476 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEP 72 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEP 72 (534)
|.++|..+|.+|++.. |..++|.|+...|++.++.++..|..+|.++++|+|||+++.+||..|+..+|.|.
T Consensus 2 ~~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~ 74 (154)
T 1f1e_A 2 AVELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 74 (154)
T ss_dssp --CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT
T ss_pred cccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc
Confidence 6789999999999999 99999999999999999999999999999999999999999999999999988873
No 10
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=4.1e-10 Score=110.18 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=65.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~ 77 (534)
+.++|+..|+.++|+++.+.+.+.++.++.+|+++|++++.|++||++|++||..||+..+ .|+|||.
T Consensus 167 ~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYGf~ 234 (235)
T 2l5a_A 167 DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 234 (235)
T ss_dssp CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC-CccccCC
Confidence 4578899999999999999999999999999999999999999999999999999999999 8999997
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.84 E-value=1.2e-08 Score=81.98 Aligned_cols=67 Identities=31% Similarity=0.385 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
+.+|..+|++++++.|..+++.|+...|++.+|+++..|..+|..+++|+||++++++||..|++.+
T Consensus 1 ~~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999865
No 12
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.74 E-value=3e-08 Score=80.14 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
..|.+|.++.|+++.++++...|.+.++....+|+++|..|++|++|++++.+||..|++.+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999864
No 13
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.70 E-value=2.9e-08 Score=87.45 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
.+|..+|++||...|..++|+++...|.+.++.++.+|+.+|..|++|+||++++++||..|++..+-
T Consensus 7 ~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 7 EIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp ---CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999998543
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.62 E-value=8.1e-08 Score=89.11 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.+|..+|.++++..|..++|+++...|++.+|+.+.+|+.+|.++++|+||+++|++||..|++.
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999975
No 15
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.39 E-value=1.1e-06 Score=74.75 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
.+|..+|++|+++.|- .+++.|+...|++.+|..|..+..+|..++.|.||++++.+||..|++.++.
T Consensus 8 ~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 8 YLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp CCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred cCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 5899999999999975 6899999999999999999999999999999999999999999999985443
No 16
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.38 E-value=8.2e-07 Score=72.98 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAe-s~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.+|.++|++|.+ .++-.++|.|+...+.+.++..+..|..+|.+.++|.+|++++.+||..|++.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999 55877899999999999999999999999999999999999999999999986
No 17
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.30 E-value=2.2e-06 Score=70.78 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 1 MSIVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~-----Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
|-.+|+.++.++...+ |-.+.+.++..+|.+-.|.++-++.++|..++.|+||.++++.||..|.+.++.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 5678999999998888 888999999999999999999999999999999999999999999999998874
No 18
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.29 E-value=6.2e-07 Score=78.98 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVYN---LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~~---lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
+|.+|+++.|.++ +|++++..|++-++..+.+|..++..|++|+||++++++||..|+|.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5778888887766 99999999999999999999999999999999999999999999875
No 19
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.28 E-value=8.6e-07 Score=77.57 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=56.1
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi---~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
+|.+|++..|. .+++++++..|++-++..+.+|..+|..|++|+||++++++||..|+|.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 57788888877 6899999999999999999999999999999999999999999999875
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.24 E-value=3e-06 Score=70.79 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=63.6
Q ss_pred CCCCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 1 MSIVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~G-------i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
|-.+|+.++.++...++ -.+.+.++..+|.+..|.++-.+.++|..++.|+||.++++.||..|.+.++..
T Consensus 1 ~lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 1 MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 66789888888777776 458999999999999999999999999999999999999999999999998874
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7.5e-06 Score=69.54 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=52.5
Q ss_pred HHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~----Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
+|..|+++. |+ ++|++++..|++-++..+.++.+++..|++|+||++++++||..|+|.
T Consensus 17 ~V~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 355566665 55 599999999999999999999999999999999999999999999875
No 22
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.97 E-value=2.3e-05 Score=74.31 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
.+|..+|.+|+++.+- .+++.|+...|++.++..|..|..+|.+++.|.+|++++.+||-.||+.++.+
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 5899999999999973 68999999999999999999999999999999999999999999999977664
No 23
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.96 E-value=6.9e-06 Score=74.72 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=51.7
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 9 IEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~----Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
|..|++.. |+ +++++++..|++-++..+.+|..++..|++|++|++++++||..|+|.
T Consensus 25 VgkIvee~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 44555544 55 599999999999999999999999999999999999999999999975
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.93 E-value=2.2e-05 Score=70.71 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 3 ~~~~e~V~~iAes~G--i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
.||...|++|.+..+ ..+++.|+...|++.+|.+|..|..+|.++++|.+|++++.+||-.||+.++.
T Consensus 9 ~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 9 NLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp --CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 489999999999765 67899999999999999999999999999999999999999999999998775
No 25
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.86 E-value=3.5e-05 Score=66.05 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
..+|...|++|.++-+- .+++.++...++..+|+.+.+++++|.+.+++.||++++.+||..|++..
T Consensus 18 ~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 18 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp --CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 35899999999999876 67999999999999999999999999999999999999999999998653
No 26
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.74 E-value=4.9e-05 Score=69.28 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCC
Q 009476 4 VPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEP 72 (534)
Q Consensus 4 ~~~e~V~~iAes~G-------i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEP 72 (534)
||+.++.++...++ -.+.+.+|..+|.+..|.++-++.++|..++.|+||.+|++.||..|.+.+++..
T Consensus 62 IpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~~ 137 (140)
T 3nqu_A 62 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEE 137 (140)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---
T ss_pred cccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccccc
Confidence 56666666555554 4589999999999999999999999999999999999999999999999998753
No 27
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.73 E-value=6.9e-05 Score=64.79 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIG--------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~G--------i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.+|+.++.++...+| ..+.+.+|..+|.+..|..+-++.++|..++.|+||.++++.||..|.+.
T Consensus 27 lIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 27 LISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred hhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 368888777777776 45789999999999999999999999999999999999999999999875
No 28
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.71 E-value=8.3e-05 Score=66.57 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++.+.- +..+++++++..||.-+||...||++.|.+.++|.+|+++|++||+.|++.
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 58999999999986 999999999999999999999999999999999999999999999999973
No 29
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.70 E-value=8e-05 Score=66.40 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++.+..+ ..+++++++..||.-+||...||++.|.+.++|.+|+++|++||..|++.
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 589999999999998 78999999999999999999999999999999999999999999999973
No 30
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.67 E-value=0.00012 Score=66.63 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 3 IVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 3 ~~~~e~V~~iAes~-----Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
.||+.++.++...+ |-.+.+.++..+|.+..|.++-++.++|..++.|+||.+|++.||..|.+.++.
T Consensus 62 LIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 47888888877777 777999999999999999999999999999999999999999999999998764
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.63 E-value=0.00012 Score=66.04 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++.+.- +..+++++++..||.-+||...||++.|.+.++|.+|+++|++||..|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 58999999999985 999999999999999999999999999999999999999999999999973
No 32
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.60 E-value=0.00011 Score=67.72 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++.+.. +..+++++++..||.-+||...||++.|.+.+++.+|+++|++||+.|++.
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 58999999999986 999999999999999999999999999999999999999999999999974
No 33
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.59 E-value=4.4e-05 Score=70.52 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 3 IVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 3 ~~~~e~V~~iAes~G-------i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
.||+.++.++...++ -.+.+.+|..+|.+..|.++-++.++|..++.|+||.+|++.||..|.+.++.
T Consensus 77 LIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 77 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp CSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 367777777666665 34789999999999999999999999999999999999999999999998765
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.55 E-value=0.0034 Score=63.77 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=92.8
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhH
Q 009476 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 326 (534)
Q Consensus 247 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGA 326 (534)
.+++|+..++|.++.++.... ....++.|..|..|+.+|..++..+|. .+-+.++..+...|.| .....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d--~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~--~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQD--ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN--PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--SSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC--SSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcc--cccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 456788899998877753221 112457899999999999999999984 4557788888788765 467889999
Q ss_pred HHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009476 327 IQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (534)
Q Consensus 327 I~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (534)
+.+|.+++...-...+-|+++.++..|.+.+.+ .+..+|..|..+.|.+....+..
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcccc
Confidence 999999975332233456666666666666643 35667888888888887766653
No 35
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.55 E-value=0.00012 Score=66.13 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++.+.- +..+++++++..||.-+||...||++.|.+.++|.+|+++|++||..|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 58999999999985 899999999999999999999999999999999999999999999999973
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.51 E-value=0.00011 Score=63.15 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||..-|++|.++-+- .+++.++.-.++.-+||.+.++++.|.+++++.+|++++.+||..|++.
T Consensus 11 ~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5899999999998765 6899999999999999999999999999999999999999999999875
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.39 E-value=0.00029 Score=63.47 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||..-|.++.+.-+. .+++.+++..||.-+||...||++.|.+.++|.+|+++|++||..|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5899999999999984 4899999999999999999999999999999999999999999999974
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.32 E-value=0.0005 Score=61.07 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
.+|..-|++|.++- ....++.++...++..+||.+.+|+.+|...++..||++++.+||..|++..
T Consensus 41 ~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp SSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 58999999999863 4567999999999999999999999999999999999999999999999653
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.29 E-value=0.0051 Score=69.15 Aligned_cols=197 Identities=13% Similarity=0.182 Sum_probs=119.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhhhcCCc--cccchhH---HHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCc--c
Q 009476 175 YFDKIRELTVSRSNSTVFKQALLSLAMDSGL--HPLVPYF---TYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--H 247 (534)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL--~qLLPYf---v~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L--~ 247 (534)
+...+...+ ..++...|+.|+..|..=... ..+.||+ +.++...... .+-..-...+....++..++.. .
T Consensus 216 ~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 216 FIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHH
Confidence 334444433 345666777666554321110 1123332 2222222221 2333444455666667665543 3
Q ss_pred cccchhhhHHHHHHHHhcc---------ccCCCCCC----cchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc
Q 009476 248 IEPYLHQMMPSVITCLVSK---------RLGNRFSD----NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (534)
Q Consensus 248 IepYLHqLlPsvLTCll~k---------~l~~~~~~----~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 314 (534)
+.||+..++|.++.++... .......+ ..|.+|..|+..|..++..+|. .+-+.++..+.+.+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhc
Confidence 6899999999998887421 11011111 5899999999999999999874 466788888888877
Q ss_pred CCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009476 315 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (534)
Q Consensus 315 dp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (534)
|+ ....+.+|+.+|..++...-+ .+-|+++.++..|.+.+.+ .+..+|..|..+.|.+-..++
T Consensus 370 ~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 370 HH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp CS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Confidence 64 588899999999999765544 3457888888777777643 345566666666665554443
No 40
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.21 E-value=0.0069 Score=66.90 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=123.5
Q ss_pred HHHHH---HHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 009476 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (534)
Q Consensus 190 ~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~-L~IepYLHqLlPsvLTCll~ 265 (534)
..|+. +|..|...-| ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l-- 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG--
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc--
Confidence 45554 4444555444 56677777777666543 356666667778888887654 456788888888877764
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh---Hh
Q 009476 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV---HL 340 (534)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y--~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aV---r~ 340 (534)
.+.++.+|+.|+..|+.++...+... ...-+.++..+.+.+.|+ ......|..+|..+....- ..
T Consensus 421 -------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 421 -------NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccch
Confidence 24589999999999999999876421 234567888888888764 4566677778877754422 24
Q ss_pred hcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009476 341 LILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (534)
Q Consensus 341 lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (534)
.+-|+++.++..|.+.+... ..+...|..|.+..+.+....|.-
T Consensus 491 ~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred hhHHHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcchh
Confidence 46688888888877776421 123456788888888888877754
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.20 E-value=0.00076 Score=64.54 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHc-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSI-GV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~-Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
.||...|.++.+.. +. .+++++++..||.-+||...||++.|.+.++|.||+++|++||..|++.
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 58999999999987 54 5999999999999999999999999999999999999999999999973
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.11 E-value=0.0038 Score=69.17 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=120.2
Q ss_pred HHHHHH---HHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 009476 190 TVFKQA---LLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (534)
Q Consensus 190 ~~r~~A---L~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~-L~IepYLHqLlPsvLTCll~ 265 (534)
..|+.| |..|...-+ ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-- 417 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-- 417 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh--
Confidence 445544 444444333 35567666666655433 356666667777888887655 346789999999998886
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh-----
Q 009476 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV----- 338 (534)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~--y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aV----- 338 (534)
.+.++.+|..|+..|+.++..++.. ....-+.++..+.+.+.|+ ...+-.|..+|..+....-
T Consensus 418 -------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 418 -------KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp -------TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccc
Confidence 2567999999999999999987642 1233467888888888763 3445667777777655432
Q ss_pred --------HhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhh
Q 009476 339 --------HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 384 (534)
Q Consensus 339 --------r~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~ 384 (534)
...+.|+++.++..|...+......+...|..+..+.+.|..++|.
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 1347788888888877766432112335666777777777777765
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.07 E-value=0.016 Score=63.93 Aligned_cols=127 Identities=8% Similarity=0.087 Sum_probs=88.2
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009476 248 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 327 (534)
Q Consensus 248 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI 327 (534)
+.+|+..++|.++.++-... ....++.|.+|..|+.+|..++..+|. .+-+.++..+.+.+.|+ ....+.+|+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~--~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~~a~ 390 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQN--EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITAD--NWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCC--ChhHHHHHH
Confidence 46778889998888763221 112356799999999999999999983 45677888888887654 477899999
Q ss_pred HHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhh
Q 009476 328 QGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 384 (534)
Q Consensus 328 ~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~ 384 (534)
.+|..++...-...+.|+++.++..|...+.+ .+..+|..+..+.|.+...++.
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMND---QSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhh
Confidence 99999974332233456666666666665542 3556676676666666665543
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.96 E-value=0.017 Score=54.98 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 009476 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (534)
Q Consensus 230 L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 309 (534)
+..+-.++..|-. .+++|+.+++|.++.++- +.+-.+|+.|+..|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~--~----~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS--L----EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC--H----HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC--H----HHHHHHH
Confidence 3444455544422 568999999999988852 3456899999999999988543 3 3566667
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhh----ChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009476 310 LHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (534)
Q Consensus 310 ~k~lldp~k~l~t~YGAI~GL~aL----G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (534)
...|.| ++....-+++..|..+ |++ ....++++.+...|...+.+ .+..+|..|..+.+.+..++|.-
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~---~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPT---ALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777764 3557777777776663 333 23446666776666666643 45678999999999999999964
No 45
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.72 E-value=0.0034 Score=55.91 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~-~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
-|..+..+++-. .+|.++...+-..|++....|..||.+++++.||++||..||..|.+++
T Consensus 38 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 377788888876 6999999999999999999999999999999999999999999999874
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.72 E-value=0.022 Score=63.96 Aligned_cols=173 Identities=19% Similarity=0.199 Sum_probs=118.8
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCC
Q 009476 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD 274 (534)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~ 274 (534)
+|..|....| ..++|.++.++.+.+.. .+...-...+..+.++..+..-.+++|+.+++|.++.++ .+
T Consensus 344 ~L~~la~~~~-~~~~~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---------~d 411 (852)
T 4fdd_A 344 ALDVLANVYR-DELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---------SD 411 (852)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------CC
Confidence 4555555444 46777777777766544 367766777888888888877788899999999998886 36
Q ss_pred cchHHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhh
Q 009476 275 NHWDLRNFVADLIASICTRFGH-VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (534)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~k~~~-~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 353 (534)
.++.+|..|+..|+.++...+. ........++..|.+.+.|+ ....+..|..+|..+....-. .+.|+++.++..|
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L 488 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEACT-ELVPYLAYILDTL 488 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHHH
Confidence 7899999999999999986542 22334567888888888765 456677788888777544333 3788888888888
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009476 354 EPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (534)
Q Consensus 354 e~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (534)
...+...... ...-+..+.+.+..++|..
T Consensus 489 ~~~l~~~~~~---~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 489 VFAFSKYQHK---NLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHCCHH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhChH---HHHHHHHHHHHHHHHhhhh
Confidence 7766432111 1122344455555555543
No 47
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.61 E-value=0.0045 Score=55.35 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~-~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
-|..+..+++-. .+|.++...+-..|++....|..||.+++++.||++||..||..|.+++
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 477888888876 6999999999999999999999999999999999999999999999874
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.60 E-value=0.038 Score=61.13 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 009476 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (534)
Q Consensus 230 L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 309 (534)
....++.+.+|+.+-.-.+.+|+.+++|.++.++-. .+++.+|..|..+++.|++..|......-+.|+..+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN--------YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 334566666666654556789999999999888732 147899999999999999999876666667888899
Q ss_pred HHHhcCCCCCchhhhhHHHHHHh----hChhhhHhhcccchHHHHHhhhhhh
Q 009476 310 LHAFLDPTKSLSQHYGAIQGLAA----LGPSVVHLLILPNLELYLKFLEPEM 357 (534)
Q Consensus 310 ~k~lldp~k~l~t~YGAI~GL~a----LG~~aVr~lllP~L~~y~~~Le~~l 357 (534)
.+.|.++.......--++.++.. +|.+ +.|+++.++..|...+
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-----~~~~l~~~~~~l~~~~ 743 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALAIGGE-----FKKYLEVVLNTLQQAS 743 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-----GGGGHHHHHHHHHHHH
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHH
Confidence 99987643333343444444433 3433 4566667666665554
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.089 Score=51.25 Aligned_cols=190 Identities=9% Similarity=0.067 Sum_probs=115.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhhh-c----CCccc-cchh--HHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-
Q 009476 175 YFDKIRELTVSRSNSTVFKQALLSLAM-D----SGLHP-LVPY--FTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH- 245 (534)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~sL~t-D----~gL~q-LLPY--fv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~- 245 (534)
|++.+ ..++-..|++||..|.. - +.+.. -.+| ++.-+...+.. =.|......-++.+..|...=.
T Consensus 21 f~~~l-----~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 21 FQERI-----TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp HHHHH-----TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHh-----hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhccc
Confidence 55654 23455567888876666 2 22321 1122 23333333311 0244433334444444443222
Q ss_pred cccc-cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchh--hHHHHHHHHHHHhcCCCCCchh
Q 009476 246 IHIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--LQSRVTRTLLHAFLDPTKSLSQ 322 (534)
Q Consensus 246 L~Ie-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~--L~~RI~~tL~k~lldp~k~l~t 322 (534)
=.++ +|...++|+++..+= +..=.+|+.|...|..||...+..... + +.++..+...|.+ +....
T Consensus 95 ~~f~~~y~~~llp~ll~~l~---------dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~--k~~~v 162 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTK---------EKKPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKH--KTPQI 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTC--SSHHH
T ss_pred ccccHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcC--CChHH
Confidence 2467 999999999887752 223479999999999999986431111 2 2467777777653 35688
Q ss_pred hhhHHHHHHhhChhhhH--hhcccch-HHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009476 323 HYGAIQGLAALGPSVVH--LLILPNL-ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (534)
Q Consensus 323 ~YGAI~GL~aLG~~aVr--~lllP~L-~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (534)
..+++..|..+=..+-. ..+.|++ +.+...|...+.+ .+..+|..|..+.+++..++|..
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHH
Confidence 99999888776433321 2344566 6666666666643 36678999999999999999974
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.32 E-value=0.038 Score=52.46 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHH---HHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC--CCcc
Q 009476 173 QLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN--PHIH 247 (534)
Q Consensus 173 Q~Yf~kIt~a~l~~~~~~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N--p~L~ 247 (534)
..++..+.+.+ +..+...|.. ||..+-...++..++|.+...+. + +|...-...+.++..++.+ |.-.
T Consensus 97 ~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~----~--~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS----N--KNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT----C--SCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----C--CChHHHHHHHHHHHHHHHHcCCCCc
Confidence 33444444443 4444555553 66666667777777777655442 1 3565556677888887766 4456
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009476 248 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 296 (534)
Q Consensus 248 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~ 296 (534)
..+|++.++|.++.|+ .+.+|.+|+.|...++.|++..|.
T Consensus 170 ~~~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CHHHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 7899999999999997 377899999999999999988775
No 51
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.94 E-value=0.0063 Score=55.52 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccCHhhHHHHHhcc
Q 009476 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCM-RHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrlreIiqeA~Kfm-rhskR~kLt~~DIn~AL~~~ 68 (534)
.||..-|+.|.++-. +..++.++...++..+|+.|.+++..|...+ +..||++|+.+||..|+...
T Consensus 19 ~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 19 FLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 478888888887643 2469999999999999999999999999999 99999999999999999853
No 52
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.56 E-value=0.033 Score=53.14 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=55.1
Q ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
-|..+.++++- ..+|+++...+...+..-+..|..+|.+++++.+|+++|..||..|.+.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 36777888875 5699999999999999999999999999999999999999999999985
No 53
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.44 E-value=0.43 Score=55.74 Aligned_cols=120 Identities=10% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-------Cch
Q 009476 228 SLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-------VYQ 299 (534)
Q Consensus 228 ~~L~~llrmv~ALl~Np~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~-------~y~ 299 (534)
......+..+..++.+-.- .+.+|+..++|.++.|+ .+..|.+|..|...++.+++.+|. ...
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l---------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV---------GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4444555666666654332 26789999999999876 245689999999999999999886 444
Q ss_pred hhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009476 300 NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (534)
Q Consensus 300 ~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 357 (534)
.....|+..+.+.|.+.+.....+-.|+.+|..|...+=. .+.|+++.++..|.+.+
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-~~~~~~~~~l~~L~~~l 619 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-NLGSDLPNTLQIFLERL 619 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-GCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc-hhhhhHHHHHHHHHHHh
Confidence 4456788888888854445556677777777766332211 13455555555554443
No 54
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.31 E-value=0.096 Score=42.99 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++++..+..+.+++.- ..+++++...|.+-+...+..++..|.+.++|-|-.+|.+.||...|+-
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 5778888888877754 4699999999999999999999999999999999999999999999875
No 55
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.97 E-value=0.11 Score=43.87 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHHhccC
Q 009476 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNLRN 69 (534)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhsk-R~kLt~~DIn~AL~~~n 69 (534)
|-|++..||.+..++--..++++++..++--....+-||+++|.+++.+-. +.-|.+.||..|.+.+.
T Consensus 15 s~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 15 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 458999999999888777899999999999999999999999999999875 45899999999988754
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.85 E-value=0.67 Score=54.12 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=112.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhcC---Ccc---ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccc
Q 009476 176 FDKIRELTVSRSNSTVFKQALLSLAMDS---GLH---PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE 249 (534)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~tD~---gL~---qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~Ie 249 (534)
+..+.+.+.+ .|...|..|++.|.+.- ..+ ...++++..+.+.+.. .|...-..-++.+..|... + =+
T Consensus 8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~--~-~~ 81 (1230)
T 1u6g_C 8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSK--V-KE 81 (1230)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTT--S-CH
T ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh--C-CH
Confidence 3344444543 46667888877665431 111 1122333333333321 2333333334444555542 1 12
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHHhcCCCCCchhh
Q 009476 250 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV------YQNLQSRVTRTLLHAFLDPTKSLSQH 323 (534)
Q Consensus 250 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~------y~~L~~RI~~tL~k~lldp~k~l~t~ 323 (534)
+|+.++++.++.++. +++-.+|..|+..|+.|+..++.. .....+.++..|.+.+.| .......
T Consensus 82 ~~~~~i~~~Ll~~l~---------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 82 YQVETIVDTLCTNML---------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHHHHHHHHHHHHTT---------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHH
Confidence 688888888888752 333478999999999999988764 123456788888888765 3456788
Q ss_pred hhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 009476 324 YGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 387 (534)
Q Consensus 324 YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~ 387 (534)
.||+..|..+-... ...+.|+++.++..|.+.+.. .+..+|..|.+..+.+....+.-++
T Consensus 152 ~~al~~l~~~~~~~-~~~l~~~~~~ll~~l~~~L~~---~~~~vR~~a~~al~~l~~~~~~~~~ 211 (1230)
T 1u6g_C 152 LEALDIMADMLSRQ-GGLLVNFHPSILTCLLPQLTS---PRLAVRKRTIIALGHLVMSCGNIVF 211 (1230)
T ss_dssp HHHHHHHHHHHHHT-CSSCTTTHHHHHHHHGGGGGC---SSHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 89998888763221 124668888888888877753 2445677777777777666654433
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.40 E-value=0.73 Score=48.06 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=56.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh----hhhHhhcccchHHH
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP----SVVHLLILPNLELY 349 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~----~aVr~lllP~L~~y 349 (534)
++++.+|..|+..|+.+++.++.. ...+.+...+.+.+.|+. ...+.+|+.+|..++. +.....++|.+..+
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQ--DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSC--HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567788888888888888776642 234556666666666654 4566777777766643 23333444444333
Q ss_pred HHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009476 350 LKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (534)
Q Consensus 350 ~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (534)
.. ..+..+|..|-+..|.+...+|
T Consensus 251 ~~----------d~~~~vR~~a~~~l~~l~~~~~ 274 (588)
T 1b3u_A 251 AE----------DKSWRVRYMVADKFTELQKAVG 274 (588)
T ss_dssp HT----------CSSHHHHHHHHHTHHHHHHHHC
T ss_pred cc----------CCCHHHHHHHHHHHHHHHHHhC
Confidence 21 1233455666666666655543
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.29 E-value=0.76 Score=47.94 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=66.2
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009476 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (534)
Q Consensus 252 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~ 331 (534)
...++|.++.++ .+.+|.+|+.|+..++.++..+|... ....++..+.+.+.|+ +...+-.++.++.
T Consensus 439 ~~~l~~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~--~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 439 DEKLNSLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDP--NYLHRMTTLFCIN 505 (588)
T ss_dssp CHHHHHHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCC--CHHHHHHHHHHHH
Confidence 345677666553 35678999999999999999888632 3455666666555443 4455566666666
Q ss_pred hhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009476 332 ALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (534)
Q Consensus 332 aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (534)
.++...-... +++.++..|...+. ..+..+|..+.+..+.+...+|.-
T Consensus 506 ~l~~~~~~~~---~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 506 VLSEVCGQDI---TTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHHHHHHH---HHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHhcCHHH---HHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHHhchh
Confidence 6544221111 11122222222222 234557777877888777766654
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.97 E-value=0.19 Score=50.74 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=72.8
Q ss_pred HHHHH---HHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 009476 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (534)
Q Consensus 190 ~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~-L~IepYLHqLlPsvLTCll~ 265 (534)
..|+. +|..|...-| ..++|.++.++.+.+.. .+...-...+..+.++..... =.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l-- 417 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-- 417 (462)
T ss_dssp SHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG--
T ss_pred hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh--
Confidence 34554 4555555555 67888888888766653 467777778888889988665 357899999999988886
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009476 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGH 296 (534)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~ 296 (534)
.+.++.+|..|+..|+.+|..++.
T Consensus 418 -------~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 418 -------KDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred -------cCCCHHHHHHHHHHHHHHHHhccc
Confidence 256789999999999999998876
No 60
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.12 Score=50.63 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=57.0
Q ss_pred HHHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 7 ETIEVIAQSIG----VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 7 e~V~~iAes~G----i~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
.-|+.||+... --+...+|..+|-+..|.++-.+.+++.-|+.|+||-++++.||..|.+.++.
T Consensus 19 RLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 19 RLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 34677888754 23788999999999999999999999999999999999999999999999875
No 61
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.67 E-value=0.85 Score=38.05 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 3 IVPKETIEVIAQSIGVY----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi~----~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.||+++|.++.. ..+. ++++|+.+.+++.++-.++|.+..|..-++-.....|..+|++..+-
T Consensus 12 ~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 12 GFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp CCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 589999999999 6664 79999999999999999999999999988877888999999998764
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.60 E-value=1.8 Score=41.84 Aligned_cols=144 Identities=11% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHH---HHhhhcCCcc--ccc-hhHHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhc--CC
Q 009476 175 YFDKIRELTVSRSNSTVFKQAL---LSLAMDSGLH--PLV-PYFTYFISEEVTRSLKN--FSLLFALMRVARSLLR--NP 244 (534)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL---~sL~tD~gL~--qLL-PYfv~FI~e~V~~nl~n--l~~L~~llrmv~ALl~--Np 244 (534)
.++-+...+-...+...+..|+ ..|.+ |++ .+- ||....+---+ ..+++ -..-......+.+++. ||
T Consensus 61 ~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~~~y~~~llp~ll-~~l~dkk~~V~~aa~~al~~i~~~~~~ 137 (249)
T 2qk1_A 61 LLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFSKDYVSLVFTPLL-DRTKEKKPSVIEAIRKALLTICKYYDP 137 (249)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSCHHHHHHHHHHHH-HGGGCCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccccHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHccc
Confidence 4555555442445655565544 44553 333 344 66655554322 22332 3333445555566665 55
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC---chhhH-HHHHHHHHHHhcCCCCCc
Q 009476 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV---YQNLQ-SRVTRTLLHAFLDPTKSL 320 (534)
Q Consensus 245 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~---y~~L~-~RI~~tL~k~lldp~k~l 320 (534)
....+|+..+++.++.++= ...|.+|..+..+|+.++...+.. +...- +.|+..+.+.+-|++ .
T Consensus 138 -~~~~~~l~~ll~~l~~~l~---------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~--~ 205 (249)
T 2qk1_A 138 -LASSGRNEDMLKDILEHMK---------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ--P 205 (249)
T ss_dssp -TCTTCTTHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS--H
T ss_pred -cccCCcHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC--H
Confidence 3355679999998887752 225899999999999999988752 22233 677788888887664 3
Q ss_pred hhhhhHHHHHHhh
Q 009476 321 SQHYGAIQGLAAL 333 (534)
Q Consensus 321 ~t~YGAI~GL~aL 333 (534)
..+=.|+-+|..+
T Consensus 206 ~VR~aA~~~l~~i 218 (249)
T 2qk1_A 206 AIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555553
No 63
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.45 E-value=2.6 Score=47.88 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=91.1
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHHhhh---cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCC
Q 009476 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRS---LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNR 271 (534)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~n---l~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~ 271 (534)
+|..+..--| ..++|.+..|+.+.+... -.++......+..+.++.....-...+++.++++ ++..+ ..
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~- 515 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PY- 515 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CT-
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Cc-
Confidence 3444444433 567788888887766542 1467778888888888887766666678877777 43332 11
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHH
Q 009476 272 FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 351 (534)
Q Consensus 272 ~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 351 (534)
.+.|-.+|..|..+|+.++.-++. .+..-+.++..+.+.| | .... --|..+|..|- +..+..+.|+++.++.
T Consensus 516 -~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~--~~A~~al~~l~-~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 516 -EKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMS--AQATLGLKELC-RDCQLQLKPYADPLLN 587 (971)
T ss_dssp -TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCH--HHHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHH--HHHHHHHHHHH-HHHHHhccccHHHHHH
Confidence 134678999999999999987664 2345567888888887 5 2232 22333334443 3345567899988888
Q ss_pred hhhhhhh
Q 009476 352 FLEPEML 358 (534)
Q Consensus 352 ~Le~~l~ 358 (534)
.|...+.
T Consensus 588 ~l~~~l~ 594 (971)
T 2x1g_F 588 ACHASLN 594 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8876664
No 64
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.34 E-value=2.4 Score=47.89 Aligned_cols=137 Identities=11% Similarity=0.093 Sum_probs=91.5
Q ss_pred cccchhHHHHHHHHHhh--hcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHH
Q 009476 206 HPLVPYFTYFISEEVTR--SLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 283 (534)
Q Consensus 206 ~qLLPYfv~FI~e~V~~--nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~A 283 (534)
..+++.+..++.+.+.. +-.++......+..+.++.....-...+++.++++ .+. .++. +|-.+|..+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~--~l~~----~~~~vr~~~ 509 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIP--RISI----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGG--GSCC----CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHH--hCCC----CcHHHHHHH
Confidence 34667777777766632 12467777778888888887765555677776666 222 2322 477899999
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhh
Q 009476 284 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 358 (534)
Q Consensus 284 A~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~ 358 (534)
..+++..++-+.. .+..-+.++..+.+.|.| ...+--|...|..|-.+ .+..+.|+++.++..|...+.
T Consensus 510 ~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 510 MFTIGALSEWLAD-HPVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp HHHHHHTHHHHHH-CHHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhc
Confidence 9999999875443 234445677777777755 23344566666666543 455688999999998877664
No 65
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.89 E-value=7 Score=38.87 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchh
Q 009476 225 KNFSLLFALMRVARSLLR---NPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN 300 (534)
Q Consensus 225 ~nl~~L~~llrmv~ALl~---Np~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~ 300 (534)
+|...+...+.++.+|+. -....+..| .-.++|.+ +.|- | +..=.+|+.+-.++..++.-|+.
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L----veKl-G----d~k~~vR~~~r~il~~l~~v~~~---- 165 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL----LLKT-G----EAKDNMRTSVRDIVNVLSDVVGP---- 165 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH----HHGG-G----CSSHHHHHHHHHHHHHHHHHHCH----
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH----HHHh-C----CChHHHHHHHHHHHHHHHHHCCH----
Confidence 366666555555555532 234555555 35666654 4442 2 33347999999999999987753
Q ss_pred hHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh----ChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHH
Q 009476 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYG 376 (534)
Q Consensus 301 L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL----G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~ 376 (534)
.++...+...|. +|+.-+.-|.+..+..+ |... .-.++-.+.+ -..+ ...|..+|.-|..|..
T Consensus 166 --~~v~~~l~~g~k--sKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~i----a~ll---~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 166 --LKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTV----APFV---GDKDVNVRNAAINVLV 232 (266)
T ss_dssp --HHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHH----GGGG---GCSSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHH----HHHH---cCCCHHHHHHHHHHHH
Confidence 568888888885 67888888887766654 4431 1111000222 2222 2357788999999999
Q ss_pred HHHHHhhhhhhhhhh
Q 009476 377 ALQCAAGLCVYDRLK 391 (534)
Q Consensus 377 all~a~g~~~~~~~~ 391 (534)
.+..-+|.-++..+.
T Consensus 233 e~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 233 ACFKFEGDQMWKAAG 247 (266)
T ss_dssp HHHHHHTTHHHHHHC
T ss_pred HHHHHhhHHHHHHHh
Confidence 999999998887764
No 66
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.67 E-value=1.2 Score=36.85 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 3 IVPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 3 ~~~~e~V~~iAes~Gi----~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
-||+++|.+|.+. .. +++++|+.+.+++.++-.++|.+.-|..-++-.+-..|..+|++..+-
T Consensus 8 ~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 8 GFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp CCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 4899999999887 43 479999999999999999999999999998877888999999998764
No 67
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=89.17 E-value=0.26 Score=40.30 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA 51 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhs 51 (534)
-|..|+...|++++++|++..++-.+|.|+|.+++.-+..+.|-
T Consensus 11 ri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 11 RILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999988888774
No 68
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.39 E-value=8 Score=44.08 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=94.6
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHHhh----hcCCHHHHHHHHHHHHHhhcC------------CCcccccchh-hhHH
Q 009476 195 ALLSLAMDSGLHPLVPYFTYFISEEVTR----SLKNFSLLFALMRVARSLLRN------------PHIHIEPYLH-QMMP 257 (534)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~----nl~nl~~L~~llrmv~ALl~N------------p~L~IepYLH-qLlP 257 (534)
.|..|...-+ ..++|-+..|+.+.+.. ...|+......+.++.|+..+ +.+.+++++. .++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 4455555555 56777777777665542 134677777778888888643 2224555543 2344
Q ss_pred HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh--
Q 009476 258 SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-- 335 (534)
Q Consensus 258 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-- 335 (534)
.+ . . +...|-.+|..|..+++.++.-+. +..-..++..+.+.|.|+ +...+--|..+|..|-.
T Consensus 463 ~l-----~----~-~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 463 DL-----T----S-NNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH-----H----C-SSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCB
T ss_pred Hh-----c----C-CCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcc
Confidence 22 1 1 113477999999999999887653 345677888888888876 45556666677766543
Q ss_pred --------hhhHhhcccchHHHHHhhhhhhh
Q 009476 336 --------SVVHLLILPNLELYLKFLEPEML 358 (534)
Q Consensus 336 --------~aVr~lllP~L~~y~~~Le~~l~ 358 (534)
+.-+..+.|+++.++..|-..+.
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~ 558 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALIL 558 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHH
Confidence 11356688999999998877664
No 69
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.12 E-value=0.79 Score=53.65 Aligned_cols=158 Identities=9% Similarity=0.052 Sum_probs=105.1
Q ss_pred HHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcc-cccchhhhHHHHHHHHhccccCCC
Q 009476 193 KQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH-IEPYLHQMMPSVITCLVSKRLGNR 271 (534)
Q Consensus 193 ~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~-IepYLHqLlPsvLTCll~k~l~~~ 271 (534)
|++|-.+..--+- .+++.+...+.+.+..+-.++..+...+=.+.|+...+.-. ..+++++++|.++..+=.++.
T Consensus 434 Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~--- 509 (1023)
T 4hat_C 434 REVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG--- 509 (1023)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS---
T ss_pred HHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc---
Confidence 3555444432222 46666666666666543357888888888889999887764 679999999988876533321
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhc-------cc
Q 009476 272 FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------LP 344 (534)
Q Consensus 272 ~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~ll-------lP 344 (534)
.+++-.+|+-++-+|+++++=+.. .+..-+.+++.+.+.+.|++.. ..-=|..+|..+..+.-+.++ -|
T Consensus 510 -~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~--v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 510 -KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEG--VQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHH--HHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 245557888999999988875433 3455667777788887665432 233366777777777655554 47
Q ss_pred chHHHHHhhhhhhh
Q 009476 345 NLELYLKFLEPEML 358 (534)
Q Consensus 345 ~L~~y~~~Le~~l~ 358 (534)
++..+...+.....
T Consensus 586 ~~~~il~~l~~~~~ 599 (1023)
T 4hat_C 586 FIQTIIRDIQKTTA 599 (1023)
T ss_dssp HHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 88888777766543
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.96 E-value=2.5 Score=39.19 Aligned_cols=142 Identities=9% Similarity=0.069 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhh-----cCCc-----cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 009476 176 FDKIRELTVSRSNSTVFKQALLSLAM-----DSGL-----HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NP 244 (534)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~t-----D~gL-----~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-Np 244 (534)
|+.+++.+-+. +...+..|+..|+. ++.. ...+|.++.++.+ .+.......+..+..|.. |+
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCH
Confidence 55555544433 34445555555532 2211 1345666655532 234455556666666765 33
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhcCCCCCchhh
Q 009476 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQH 323 (534)
Q Consensus 245 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~-y~~L~~RI~~tL~k~lldp~k~l~t~ 323 (534)
...-.-.-...+|.++.++- +.++.+|..|+..|+.|+...... -.-+...++..|.+.+.++ +....
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~ 155 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQIL 155 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHH
Confidence 32211111246777766652 235799999999999997633221 1122334677888888754 55677
Q ss_pred hhHHHHHHhhCh
Q 009476 324 YGAIQGLAALGP 335 (534)
Q Consensus 324 YGAI~GL~aLG~ 335 (534)
.-|+.+|..|..
T Consensus 156 ~~a~~~L~~l~~ 167 (252)
T 4db8_A 156 QEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 888888888854
No 71
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=86.44 E-value=2.7 Score=38.53 Aligned_cols=111 Identities=9% Similarity=0.041 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC-CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 009476 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN-PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (534)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N-p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (534)
.+|.++.++.+ .+.......+..+..|..+ +...-.-.-+..+|.++.++- ++...+|..|+..
T Consensus 45 ~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~~~ 109 (252)
T 4hxt_A 45 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 109 (252)
T ss_dssp HHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 46666655542 2455556667777777766 322222222346777777652 2357999999999
Q ss_pred HHHHHHHhCCC-chhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 287 IASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 287 L~~I~~k~~~~-y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
|..++...... -.-+...++..+.+.+.+++ ......|+.+|..|..
T Consensus 110 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 110 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHc
Confidence 99999521110 01122235667778776543 6678888888888843
No 72
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=85.95 E-value=3.8 Score=36.86 Aligned_cols=141 Identities=10% Similarity=0.090 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHH---HHhhh-cCCc------cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-C
Q 009476 175 YFDKIRELTVSRSNSTVFKQAL---LSLAM-DSGL------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-N 243 (534)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL---~sL~t-D~gL------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-N 243 (534)
+|..+...+ ..++...+..|+ ..|.. ++.. ...+|.++.++.+ .+.......+..+..|.. |
T Consensus 13 ~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCC
Confidence 445555543 444555565544 44442 2111 1356666666542 245555666677777764 3
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhcCCCCCchh
Q 009476 244 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQ 322 (534)
Q Consensus 244 p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k~lldp~k~l~t 322 (534)
+...-.-.-+..+|.++.++- +.+..+|..|+..|..|+....... .-+...++..|.+.+.++ +...
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v 154 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHH
Confidence 332222222457888888752 2357999999999999985211100 112334667788887754 4566
Q ss_pred hhhHHHHHHhh
Q 009476 323 HYGAIQGLAAL 333 (534)
Q Consensus 323 ~YGAI~GL~aL 333 (534)
..-|+.+|..|
T Consensus 155 ~~~a~~aL~~l 165 (210)
T 4db6_A 155 LQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 73
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=85.87 E-value=4.2 Score=42.68 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=71.9
Q ss_pred ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC-CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP-HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np-~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
..+|.++..+.+ .+.......+..+..|..+. ...-..+...++|.++.++- +....+|..|+.
T Consensus 215 ~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~ 279 (530)
T 1wa5_B 215 NAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDACW 279 (530)
T ss_dssp TCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHHH
T ss_pred CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHHH
Confidence 567777766643 45667777788888888764 22224456778888877651 234689999999
Q ss_pred HHHHHHHHhCCCch-hhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 286 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 286 lL~~I~~k~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
.|+.++........ -+...++..|.+.+.++ .......|+..|..+.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 99999853211011 11224556777777654 4566777888888874
No 74
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=84.57 E-value=12 Score=40.19 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=56.2
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009476 248 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 327 (534)
Q Consensus 248 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI 327 (534)
.......++|.+..|+ .+.+..+|..|+..+..|++.+....+. ..++..+.+.|.| ......++|+
T Consensus 115 ~~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~A~ 181 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIAD--SNPMVVANAV 181 (591)
T ss_dssp SGGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSC--SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCC--CChhHHHHHH
Confidence 3345556778888876 2557899999999999999965432221 3677888888765 4578889999
Q ss_pred HHHHhhChh
Q 009476 328 QGLAALGPS 336 (534)
Q Consensus 328 ~GL~aLG~~ 336 (534)
..|..++.+
T Consensus 182 ~aL~~i~~~ 190 (591)
T 2vgl_B 182 AALSEISES 190 (591)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 999999764
No 75
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=84.49 E-value=14 Score=38.64 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=69.4
Q ss_pred cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009476 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (534)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~Ie-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (534)
...+|.|+..+.+ .+.......+..+..|..+..-+-+ ..-+..+|.++.++-. ....+|..|+
T Consensus 172 ~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~ 236 (530)
T 1wa5_B 172 ADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTAT 236 (530)
T ss_dssp TTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHH
T ss_pred CCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHH
Confidence 3568888887764 2455555566666666654321111 1123567777776522 4578999999
Q ss_pred HHHHHHHHHh-CCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 285 DLIASICTRF-GHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 285 ~lL~~I~~k~-~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
..|+.+|... ...-......++..|.+.+.+++ .....-|+.+|..|.
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHh
Confidence 9999999743 22222334456777888776553 566677777777763
No 76
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=83.38 E-value=14 Score=36.99 Aligned_cols=112 Identities=9% Similarity=0.059 Sum_probs=71.5
Q ss_pred ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC--CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009476 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP--HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (534)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np--~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (534)
..+|.++.++.+ -.+.......+..+..|..+. ... ..++..++|.++.++- +++..+|..|+
T Consensus 149 ~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~---------~~~~~v~~~a~ 213 (450)
T 2jdq_A 149 NILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLF---------VSDTDVLADAC 213 (450)
T ss_dssp TCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTT---------CCCHHHHHHHH
T ss_pred CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHc---------cCCHHHHHHHH
Confidence 467777776642 134566667778888888764 333 3345889998888752 23468999999
Q ss_pred HHHHHHHHHhCCCc-hhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 285 DLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 285 ~lL~~I~~k~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
..|+.++....... .-....++..|.+.+.++ .......|+..|..+..
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhh
Confidence 99999985211100 011223566777777643 45667788888888743
No 77
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=82.93 E-value=11 Score=37.82 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=82.1
Q ss_pred HHHHHhhcCCChHHHHH---HHHHhhhcC--C-----ccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcc
Q 009476 178 KIRELTVSRSNSTVFKQ---ALLSLAMDS--G-----LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH 247 (534)
Q Consensus 178 kIt~a~l~~~~~~~r~~---AL~sL~tD~--g-----L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~ 247 (534)
.+.+.+-...+...++. +|..|..+. . +..++|.++..+.+ .|..........+..|..+..-.
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHH
Confidence 34443322234555665 445555442 2 35677777776642 34555566666777777654222
Q ss_pred cccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHhcCCCCCchhhhh
Q 009476 248 IEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYG 325 (534)
Q Consensus 248 IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YG 325 (534)
....+ ..++|.++.++- +..|.+|..|+..|+.|+........ -+...++..|.+.+.++ ....+.-
T Consensus 227 ~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~ 295 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKE 295 (450)
T ss_dssp HHHHHHTTTHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHH
Confidence 22111 357787777651 34689999999999999863221100 11224677788887765 4566778
Q ss_pred HHHHHHhhC
Q 009476 326 AIQGLAALG 334 (534)
Q Consensus 326 AI~GL~aLG 334 (534)
|+..|..+.
T Consensus 296 a~~~L~~l~ 304 (450)
T 2jdq_A 296 ACWTISNIT 304 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888888885
No 78
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=82.62 E-value=6.3 Score=38.01 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc---
Q 009476 225 KNFSLLFALMRVARSLLRN---PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--- 298 (534)
Q Consensus 225 ~nl~~L~~llrmv~ALl~N---p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y--- 298 (534)
+|.......+..+..++.+ ..+...+.+-.+++.+..|+= +..=.+|+-|.+++..+.+..|...
T Consensus 151 Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~---------d~~~~VR~aA~~l~~~ly~~~G~~~~~~ 221 (278)
T 4ffb_C 151 KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG---------HGDRNVRSQTMNLIVEIYKVTGNNSDLL 221 (278)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT---------CSSHHHHHHHHHHHHHHHTC--------
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCcchhhh
Confidence 5666666666666666655 445566677777777776651 2234899999999999999887432
Q ss_pred -----hhhHHHHHHHHHHHhc
Q 009476 299 -----QNLQSRVTRTLLHAFL 314 (534)
Q Consensus 299 -----~~L~~RI~~tL~k~ll 314 (534)
.+|++-..+.|-+.|-
T Consensus 222 ~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 222 EEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp ---CTTSSCHHHHHHHHHHHS
T ss_pred hhhhhhcCCHHHHHHHHHHHH
Confidence 4667766777666653
No 79
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=82.53 E-value=16 Score=35.01 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCccc--ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHH
Q 009476 226 NFSLLFALMRVARSLLRNPHIHI--EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS 303 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~I--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~ 303 (534)
|.......+.++.+++.+-.... ..+....+..++..++.|.++.. .=.+|+.|...+..++...+.. .
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~~~~~~-----~ 138 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCGLDTSI-----T 138 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHTSSSS-----H
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhcCcH-----H
Confidence 67777778888888887644432 33445566777777777766542 2378999988888888654432 2
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHH----hhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009476 304 RVTRTLLHAFLDPTKSLSQHYGAIQGLA----ALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (534)
Q Consensus 304 RI~~tL~k~lldp~k~l~t~YGAI~GL~----aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (534)
.+...+...+. +++....-+++..|. .+|...+.. -|.++.+...|-..+. ..|..+|.+|..+.+.+.
T Consensus 139 ~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 139 QSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHH
Confidence 35556666654 567777777766654 346554321 1234444444444443 357889999999999999
Q ss_pred HHhhhhh
Q 009476 380 CAAGLCV 386 (534)
Q Consensus 380 ~a~g~~~ 386 (534)
.-+|...
T Consensus 212 ~~~G~~~ 218 (278)
T 4ffb_C 212 KVTGNNS 218 (278)
T ss_dssp TC-----
T ss_pred HHhCcch
Confidence 9998654
No 80
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.49 E-value=3.5 Score=47.05 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcCCCc--ccc--cchhhhH-HHHHHHHhccc--c---CCCC---------CCcchHHHHHHHHHHH
Q 009476 228 SLLFALMRVARSLLRNPHI--HIE--PYLHQMM-PSVITCLVSKR--L---GNRF---------SDNHWDLRNFVADLIA 288 (534)
Q Consensus 228 ~~L~~llrmv~ALl~Np~L--~Ie--pYLHqLl-PsvLTCll~k~--l---~~~~---------~~~hw~LRd~AA~lL~ 288 (534)
......+.+..+++..+.. .+. +|+.+|+ +.++.++.-+. . ...+ .++.|.+|..|+.+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 4556677888888776553 222 8888888 77777764321 1 1111 2355799999999999
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHhc----CCCCCchhhhhHHHHHHhh
Q 009476 289 SICTRFGHVYQNLQSRVTRTLLHAFL----DPTKSLSQHYGAIQGLAAL 333 (534)
Q Consensus 289 ~I~~k~~~~y~~L~~RI~~tL~k~ll----dp~k~l~t~YGAI~GL~aL 333 (534)
.++..|+. .+-+-++..+.+.|. ++......+.+|+..+.++
T Consensus 387 ~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 387 ELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 99999883 233334444333333 4455678889999998888
No 81
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=82.18 E-value=2.9 Score=38.76 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=71.1
Q ss_pred cchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 009476 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (534)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (534)
.+|.++.++.+ .+.......+..+..|..++....+..+ ...+|.++.++ .+.++.+|..|+..
T Consensus 97 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL---------~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 97 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---------SSPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG---------GCSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH---------hCCCHHHHHHHHHH
Confidence 45666555532 3566667778888888888776633333 35788887776 13468999999999
Q ss_pred HHHHHHHhCCCch-hhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 287 IASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 287 L~~I~~k~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
|..++........ -+...++..|.+.+.++ ......-|+..|..|.
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 9999853211000 11233456778887765 5666777888888773
No 82
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.86 E-value=15 Score=39.85 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH---HhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc
Q 009476 175 YFDKIRELTVSRSNSTVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY 251 (534)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepY 251 (534)
|+..|.. |+..++...|+.||+ .|.+...+..+++.|..|+.+ .+.+.-..+.+.+..+..+= .+-
T Consensus 351 ~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~------~d~e~r~~~v~~I~~la~k~----~~~ 419 (618)
T 1w63_A 351 HRSTIVD-CLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS------CEPEFKADCASGIFLAAEKY----APS 419 (618)
T ss_dssp GHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHSS----CCC
T ss_pred HHHHHHH-HccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHh----Ccc
Confidence 4455554 445566677777765 456677788899999988875 23444444555555555531 233
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009476 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (534)
Q Consensus 252 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~ 331 (534)
.+..++.++.++-.. +. ..++.+...+..|+++ ++.++..++..|.+.|.++...-...-.+++.|.
T Consensus 420 ~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 444455555444221 11 1233345556677776 4678888888888888754333233345777777
Q ss_pred hhChhh
Q 009476 332 ALGPSV 337 (534)
Q Consensus 332 aLG~~a 337 (534)
++|...
T Consensus 487 Ey~~~i 492 (618)
T 1w63_A 487 EYGDLL 492 (618)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 777543
No 83
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=81.32 E-value=4.6 Score=43.58 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=85.4
Q ss_pred hHHHHHHHH---HhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhc
Q 009476 189 STVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVS 265 (534)
Q Consensus 189 ~~~r~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~ 265 (534)
...|++||+ .+.++..++.+++.+..|+.+ .+...-....+.+..+..+ ..+.....++.++..+-
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~------~d~~~r~~~v~aI~~la~~----~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATE------VDVDFVRKAVRAIGRCAIK----VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHc-
Confidence 344455443 344555566666666655432 1233223333444444433 12333445555544441
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccc
Q 009476 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 345 (534)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~ 345 (534)
+....+|+.+...+..|+++|... +..++..|.+.+-+ ......+..+++.|..+|...- +
T Consensus 401 --------~~~~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~~~~~------~ 461 (591)
T 2vgl_B 401 --------TKVNYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDS-LDEPDARAAMIWIVGEYAERID------N 461 (591)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTCTTCT------T
T ss_pred --------ccchHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHh-ccCHHHHHHHHHHHHccccccc------C
Confidence 123467888888888888886554 44566666666643 3334457888888888887542 3
Q ss_pred hHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 009476 346 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 387 (534)
Q Consensus 346 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~ 387 (534)
...+++.+-..+.. |-..|..+++.|+.+++.
T Consensus 462 ~~~~l~~l~~~~~~----------~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 462 ADELLESFLEGFHD----------ESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHHSTTCSS----------SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHHHh
Confidence 34444444333221 122466777888877754
No 84
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=80.15 E-value=6.1 Score=36.04 Aligned_cols=110 Identities=9% Similarity=0.035 Sum_probs=68.4
Q ss_pred cchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 009476 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (534)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (534)
.+|.++.++.+ .+.......+..+..|. .++...-.-.-+..+|.++.++- +.++.+|..|+..
T Consensus 87 ~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 87 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 151 (252)
T ss_dssp HHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 45666655542 35666667777888887 44443322223456787777652 3458999999999
Q ss_pred HHHHHHHhCCC-chhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 287 IASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 287 L~~I~~k~~~~-y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
|..++...... ..-+...++..|.+.+.++ .......|+..|..+.
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 99998632110 1112234677788887643 3567777888888774
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.96 E-value=59 Score=38.00 Aligned_cols=176 Identities=14% Similarity=0.205 Sum_probs=110.0
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCc--ccccchhhhHHHHHHHHhccccCCCC
Q 009476 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRLGNRF 272 (534)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L--~IepYLHqLlPsvLTCll~k~l~~~~ 272 (534)
++.++-...+....+|+ . +.+.+...+.|-..-..-|-.+.+|...... ..|||+-.++|.++.+.-
T Consensus 37 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-------- 105 (986)
T 2iw3_A 37 EVASFLNGNIIEHDVPE--H-FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG-------- 105 (986)
T ss_dssp HHHHHHTSSCSSSSCCH--H-HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT--------
T ss_pred HHHHHHhccccccccch--h-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc--------
Confidence 56776665666677875 3 4445555554432227778888899954433 779999999999888852
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHh
Q 009476 273 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 352 (534)
Q Consensus 273 ~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~ 352 (534)
|..=..|+-|..-+..|+..+... .+ ..++..|.+.+. ...-..+.-||+..|..|-..+ ...+-=.++.+..-
T Consensus 106 -dk~~~v~~aa~~~~~~~~~~~~~~--a~-~~~~~~~~~~~~-~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 106 -NKDKEIQSVASETLISIVNAVNPV--AI-KALLPHLTNAIV-ETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPV 179 (986)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHSCGG--GH-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcc
Confidence 223379999999999999988752 23 677777777774 3445889999999998886544 23232344444444
Q ss_pred hhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009476 353 LEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 393 (534)
Q Consensus 353 Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~ 393 (534)
+...|-+.|. ++ ...-+.++..+++..-..++..|
T Consensus 180 ~~~~~~d~k~--~v----~~~~~~~~~~~~~~~~n~d~~~~ 214 (986)
T 2iw3_A 180 LSETMWDTKK--EV----KAAATAAMTKATETVDNKDIERF 214 (986)
T ss_dssp HHHHTTCSSH--HH----HHHHHHHHHHHGGGCCCTTTGGG
T ss_pred hHhhcccCcH--HH----HHHHHHHHHHHHhcCCCcchhhh
Confidence 4444433221 11 12234445555555555555544
No 86
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=79.16 E-value=28 Score=40.10 Aligned_cols=85 Identities=8% Similarity=-0.011 Sum_probs=54.7
Q ss_pred ccccchhhhHHHHHHHHhcccc------CC-------CCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHh
Q 009476 247 HIEPYLHQMMPSVITCLVSKRL------GN-------RFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAF 313 (534)
Q Consensus 247 ~IepYLHqLlPsvLTCll~k~l------~~-------~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~l 313 (534)
...+|+.+|++.++..+.-..- .. +..++.|.+|..++.+|..+|..++. .+-+-+...+.+.+
T Consensus 384 ~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l 460 (1049)
T 3m1i_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQI 460 (1049)
T ss_dssp GGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHh
Confidence 3456777777665555422110 00 01224689999999999999977653 34455666666665
Q ss_pred cCCCCCchhhhhHHHHHHhhC
Q 009476 314 LDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 314 ldp~k~l~t~YGAI~GL~aLG 334 (534)
.++..+....-+|+.++.++.
T Consensus 461 ~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 461 DGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp TSSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 555566778889999999884
No 87
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.25 E-value=7.1 Score=38.75 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVE---Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dve---y-rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++..++..|+ .++++++..|+.... . .+..+++.|..++...+++.+|.+||..|++.
T Consensus 268 l~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 268 LRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3444456677 599999999999887 2 36677888888888889999999999999986
No 88
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=78.21 E-value=36 Score=32.00 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 276 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 276 hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
++.+|..|+..|+.++.... ...+.+...|.+.+.|+ .....+.|+.+|..+|.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK--STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCC
Confidence 44555555555555554321 11234444444444432 23445555555555544
No 89
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.89 E-value=37 Score=30.12 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 275 NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
.++.+|..|+..|+.+.. + .....|.+.+.|+ .......|+.+|..+|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD------E----RAVEPLIKALKDE--DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC
Confidence 445666666666665421 1 2333344444433 34555666666666654
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=77.30 E-value=20 Score=40.28 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Q 009476 232 ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLH 311 (534)
Q Consensus 232 ~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k 311 (534)
.+-++.+-+-.|+ .|+..+++.++.++- . -.+|..|+..+..+|+.++.....--+.|+..|.+
T Consensus 512 ~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~-----~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 512 TIGALSEWLADHP-----VMINSVLPLVLHALG-----N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp HHHHTHHHHHHCH-----HHHTTTHHHHHHHTT-----C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCH-----HHHHHHHHHHHHHhC-----C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555454443 577777887777751 1 26899999999999998776544445677777777
Q ss_pred HhcCCCC---CchhhhhHHHHHHh-hC
Q 009476 312 AFLDPTK---SLSQHYGAIQGLAA-LG 334 (534)
Q Consensus 312 ~lldp~k---~l~t~YGAI~GL~a-LG 334 (534)
.+..+.- .....|.|+..+.. +|
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 7764332 23344666666543 44
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=77.19 E-value=9.9 Score=43.10 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 009476 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (534)
Q Consensus 230 L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 309 (534)
+..+-++.+.+-.|+ .|+..++|.++.++ . . .++..|+..+..+|+.++..-..--+-|+..|
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~----~-------~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N----S-------SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H----S-------SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C----h-------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445566676666665 68889999888887 2 1 46999999999999887644333345677777
Q ss_pred HHHhcCCCCC---chhhhhHHHHHH
Q 009476 310 LHAFLDPTKS---LSQHYGAIQGLA 331 (534)
Q Consensus 310 ~k~lldp~k~---l~t~YGAI~GL~ 331 (534)
.+.+..+.-. ....|.||.-+.
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7777654322 334566655554
No 92
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.17 E-value=43 Score=29.95 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=31.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
+.+|.+|..|+..|+.+. . +.....|.+.+.|+ .....+.|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIG----D------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcC----C------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 456777777777777662 1 12344555555443 35667777777777765
No 93
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=76.05 E-value=64 Score=31.88 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=88.8
Q ss_pred ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
..+|.|++.+... .+.......+..+..|+.|..-..+..+ +..+|.++.++- ..+..+|..|+.
T Consensus 124 g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---------~~d~~v~~~A~~ 189 (296)
T 1xqr_A 124 GALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---------QQVQKLKVKSAF 189 (296)
T ss_dssp THHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---------SSCHHHHHHHHH
T ss_pred CCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 3678887777531 1344555566667777766544343333 478888888762 235689999999
Q ss_pred HHHHHHHHhCCCch-hhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---ChhhhHhhcccchHHHHHhhhhhhhhHh
Q 009476 286 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLLEK 361 (534)
Q Consensus 286 lL~~I~~k~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~~~ 361 (534)
+|+.++......-. -...-++..|.+.|.+++ ...+.-|+.+|..+ ++.+++.+--+. ..|...|+..+.
T Consensus 190 aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~--- 263 (296)
T 1xqr_A 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQ--- 263 (296)
T ss_dssp HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHH---
T ss_pred HHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHH---
Confidence 99999986221101 122335567777776553 34444455555444 566666543321 123333433321
Q ss_pred hhhhhhHHH-HHHHHHHHHHHhhhhhh
Q 009476 362 QKNEMKRHE-AWRVYGALQCAAGLCVY 387 (534)
Q Consensus 362 ~~~~~~r~e-a~~v~~all~a~g~~~~ 387 (534)
....+| ...+|.-...-+.+|+-
T Consensus 264 ---~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 264 ---LLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp ---HHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred ---HccchHHHHHHHHHHHHHHHHHcC
Confidence 111133 46667777777777753
No 94
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=75.83 E-value=23 Score=36.76 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=83.4
Q ss_pred cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchh-hhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009476 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (534)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (534)
..++|.++..+. -.+.......+..+..|..++.-.++..+. .++|.++.++- ..++.+|..|+
T Consensus 243 ~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~v~~~a~ 307 (528)
T 4b8j_A 243 RPALPALARLIH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HPSPSVLIPAL 307 (528)
T ss_dssp TTHHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---------CCChhHHHHHH
Confidence 345666665542 135666667777777777765544333332 56777777752 23579999999
Q ss_pred HHHHHHHHHhCCCc-hhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC--h-hhhHhhcc-cchHHHHHhhhhhhhh
Q 009476 285 DLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG--P-SVVHLLIL-PNLELYLKFLEPEMLL 359 (534)
Q Consensus 285 ~lL~~I~~k~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG--~-~aVr~lll-P~L~~y~~~Le~~l~~ 359 (534)
.+|+.|+....... .-+...++..|.+.|.++. ......-|+..|..|. . +.+..++- .-++.+.+.|...
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--- 383 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--- 383 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS---
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC---
Confidence 99999986211000 0112335667777776542 4455666777777763 2 23333221 2333333333322
Q ss_pred HhhhhhhhHHHHHHHHHHHHHH
Q 009476 360 EKQKNEMKRHEAWRVYGALQCA 381 (534)
Q Consensus 360 ~~~~~~~~r~ea~~v~~all~a 381 (534)
+...|.+|..+.+.|...
T Consensus 384 ----~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 384 ----EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHcC
Confidence 334455565555555443
No 95
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.40 E-value=4.9 Score=36.75 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRV---REIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrl---reIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
-++..++..|+ .++++++..|++...-.+ ..+++.+..++...+ +++|.+||..+|+
T Consensus 182 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 182 ALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34555666788 699999999999877444 445555655554444 4699999999986
No 96
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=74.24 E-value=2.7 Score=41.87 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
+.|+.+++..|+ .++++++..|++-++..++.+.++--|++-.+..+++|.+||...+...
T Consensus 149 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 149 RWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 567799999999 6999999999999999999999999998887666789999999887543
No 97
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=73.75 E-value=1.9 Score=50.39 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcc-hHHHHHHHHHHHHHHHHhCCCchhhHHH
Q 009476 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNH-WDLRNFVADLIASICTRFGHVYQNLQSR 304 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~h-w~LRd~AA~lL~~I~~k~~~~y~~L~~R 304 (534)
++ .-..+|.+++.+.-...+.+..--. ..|+.+++.- ..|++ -++|+.||.+|+.+++ ++....... .
T Consensus 815 sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~-----L~D~q~~EVRe~Aa~tLsgll~-c~~~~~~~~-~ 883 (997)
T 1vsy_5 815 SN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSN-----LYNEQFVEVRVRAASILSDIVH-NWKEEQPLL-S 883 (997)
T ss_dssp SS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTT-----TTCSSCHHHHHHHHHHHHHHHH-SCCSHHHHH-H
T ss_pred cH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHH-cCCchhhHH-H
Confidence 56 6666777888877766666665433 3455554331 24778 8999999999999984 331112222 4
Q ss_pred HHHHHHHHhcC---C-------CCCchhhhhHHHHHHhhChhhhHhh-cccchHHHHHhhhhhh
Q 009476 305 VTRTLLHAFLD---P-------TKSLSQHYGAIQGLAALGPSVVHLL-ILPNLELYLKFLEPEM 357 (534)
Q Consensus 305 I~~tL~k~lld---p-------~k~l~t~YGAI~GL~aLG~~aVr~l-llP~L~~y~~~Le~~l 357 (534)
++..|.+.+.. . .++.....|||.||+|+=.-.=-.+ +=|.++..+..|-.+.
T Consensus 884 li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 884 LIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp HHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHh
Confidence 55556555432 0 1233678999999999621111111 1235556665555444
No 98
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.46 E-value=50 Score=29.48 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=72.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009476 176 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (534)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqL 255 (534)
...+.+.+ ...+...|..|+..|..-.. ...+|.++..+.+ .|...-...+ ++|-.-.. ...
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~~a~---~aL~~~~~-------~~~ 82 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRRAAA---DALGQIGD-------ERA 82 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SCHHHHHHHH---HHHHHHCC-------GGG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC------CCHHHHHHHH---HHHHhhCC-------HHH
Confidence 34445544 45566677777777765332 3556666655532 1333222222 33322111 245
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 256 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
+|.++.++ .+.++.+|..|+..|+.+.. + .....|.+.+.| ........|+.+|..+|.
T Consensus 83 ~~~L~~~l---------~~~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 83 VEPLIKAL---------KDEDGWVRQSAAVALGQIGD------E----RAVEPLIKALKD--EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHhC--CCHHHHHHHHHHHHHcCC
Confidence 66666664 24568999999999987732 2 344556666654 456788999999999986
Q ss_pred h
Q 009476 336 S 336 (534)
Q Consensus 336 ~ 336 (534)
.
T Consensus 142 ~ 142 (211)
T 3ltm_A 142 E 142 (211)
T ss_dssp G
T ss_pred H
Confidence 4
No 99
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.95 E-value=6.4 Score=35.05 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
++..++..|+ .++++++..|++...-.++++++...+.+..+ +++|.+||+.|+.
T Consensus 170 l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 170 LLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455556688 49999999999888877888887777777666 6899999999985
No 100
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=72.85 E-value=39 Score=36.85 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=57.3
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 009476 249 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 328 (534)
Q Consensus 249 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~ 328 (534)
..++..++|.|..|+.+ .+.+..+|..|+-.+.++++.+....+. +.+...+.+.|.| +.....++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~-------~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVA-------GDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHC-------SSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 44677889999999854 2557899999999999999976544431 1556666666654 55688899999
Q ss_pred HHHhhChhh
Q 009476 329 GLAALGPSV 337 (534)
Q Consensus 329 GL~aLG~~a 337 (534)
.|..+..+.
T Consensus 210 ~l~~i~~~~ 218 (621)
T 2vgl_A 210 LITTLAQKN 218 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 988886543
No 101
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=72.00 E-value=37 Score=35.23 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=67.8
Q ss_pred ccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009476 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (534)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (534)
..+|.|+.++.+ .+.......+..+..|..+..-.-+.. -+..+|+++.++- ...++.+|..|+.
T Consensus 160 g~i~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--------~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 160 GAVPIFVKLLGS------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--------EHTKLSMLRNATW 225 (528)
T ss_dssp THHHHHHHHTTC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--------TTCCHHHHHHHHH
T ss_pred CcHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--------cCCCHHHHHHHHH
Confidence 467777766643 244444455555555554322111111 1246777776641 1346899999999
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 286 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 286 lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
+|+.+|......-......++..|.+.+.++ ......-|+.+|..+.
T Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 9999998643333344456777888887654 4556677788887774
No 102
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.06 E-value=61 Score=28.65 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=40.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 337 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~a 337 (534)
+.+|.+|..|+..|+.+.. +.....|.+.+.|+ .....+.|+.+|..+|...
T Consensus 118 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGGER 169 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCSHH
T ss_pred CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCchh
Confidence 5679999999999998732 23555677777664 5678999999999998643
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=68.95 E-value=40 Score=38.82 Aligned_cols=155 Identities=8% Similarity=0.017 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhccccCCCC
Q 009476 194 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRF 272 (534)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~Ie-pYLHqLlPsvLTCll~k~l~~~~ 272 (534)
++|..|..-.+ ..+++.+..++.+.+...-.++......+.++.|+...=.-..+ +|+.++++.+++. +...
T Consensus 435 ~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l------~~~~ 507 (1049)
T 3m1i_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL------TVKK 507 (1049)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH------TTSS
T ss_pred HHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH------Hhhh
Confidence 45555542222 24555555555554433234677777778788888754221212 4566677666552 1111
Q ss_pred --CCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhc-------c
Q 009476 273 --SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------L 343 (534)
Q Consensus 273 --~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~ll-------l 343 (534)
.++|-.+|..+..+++..++-+.. .+..-+.++..+.+.+.|+ +...+.-|..+|..|..+.-..++ -
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~ 584 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 235666676688888888764433 3556667888888888765 355566677777777665433322 2
Q ss_pred cchHHHHHhhhhhhh
Q 009476 344 PNLELYLKFLEPEML 358 (534)
Q Consensus 344 P~L~~y~~~Le~~l~ 358 (534)
|+++.++..|...+.
T Consensus 585 p~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 585 PFIQTIIRDIQKTTA 599 (1049)
T ss_dssp CHHHHHHHTHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999888876554
No 104
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=66.50 E-value=1e+02 Score=30.21 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 009476 228 SLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVT 306 (534)
Q Consensus 228 ~~L~~llrmv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~ 306 (534)
.++..|-++-+=++ .||. ++.++++.++... + +..-++|.+-+.++..+|++ .+.+-++++
T Consensus 31 ~kl~~L~qa~el~~~~dp~-----ll~~~l~~il~~~-~--------~~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l 92 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-----LAEEFLESVLSLA-H--------DSNMEVRKQVVAFVEQVCKV----KVELLPHVI 92 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-----GHHHHHHHHHGGG-G--------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-----HHHHHHHHHHHhc-c--------CChHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44555555555233 3443 4445555555432 1 23468999999999999977 468999999
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcc-cc----hHHHHHhhhhh---hh-hHhhhhhhhHHHHHHHHHH
Q 009476 307 RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL-PN----LELYLKFLEPE---ML-LEKQKNEMKRHEAWRVYGA 377 (534)
Q Consensus 307 ~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lll-P~----L~~y~~~Le~~---l~-~~~~~~~~~r~ea~~v~~a 377 (534)
.+|...+.| ......=.+|.+...+=+.+.+.++- |+ ....|+.+..- +. .-...|..+|..+.|+...
T Consensus 93 ~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 93 NVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 999999875 34556667888888777777776542 33 35566544221 11 1112344455555555444
Q ss_pred H
Q 009476 378 L 378 (534)
Q Consensus 378 l 378 (534)
+
T Consensus 171 v 171 (257)
T 3gs3_A 171 V 171 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 105
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=65.95 E-value=6 Score=31.22 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 26 a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
...||+..+ -.|..++++|...+.+..+..+|.+|+..|++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666555 458899999999999999999999999999975
No 106
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=64.25 E-value=15 Score=43.00 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
+|..-|.+..+..-..+++..|+-.||.-+||-.-||++-|.+.++..|++++|+.||..|++.
T Consensus 105 ~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 105 LPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 6666677666554456899999999999999999999999999999999999999999999965
No 107
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.79 E-value=96 Score=28.96 Aligned_cols=50 Identities=18% Similarity=0.079 Sum_probs=36.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 335 (534)
+.++.+|..|+..|+.+.. +..+..|.+.+.|++ ....+.|+.+|..+|.
T Consensus 139 d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND----------KATIPLLINLLKDPN--GDVRNWAAFAININKY 188 (280)
T ss_dssp CSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSS--HHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCC--HHHHHHHHHHHHhhcc
Confidence 5679999999999987643 224556667776654 4578999999999873
No 108
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.61 E-value=15 Score=36.56 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dve---yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvE 71 (534)
-++..++..|+ .++++++..||...+ -.+..+++.+..++.-.++.++|.+++..|+....++
T Consensus 188 iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 188 IIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 45666777898 599999999998543 2355677788888887788899999999999987654
No 109
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.37 E-value=11 Score=33.90 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
++..++..|+ .++++++..|++...-..+.+.+.+.+.+..++ +++|.+||+.|+.
T Consensus 194 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~~ 249 (250)
T 1njg_A 194 LEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHSC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHhC
Confidence 3444456677 689999999998887666666666555555544 4899999999874
No 110
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=61.80 E-value=7.8 Score=31.00 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 35 yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
-.|..++++|...+.+..+..+|.+|+..|++..
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3577899999999999999999999999999764
No 111
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=57.73 E-value=19 Score=32.07 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=75.4
Q ss_pred HHHHHHhhcCCChHHHHHHH---HHhhh-cCCc------cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCc
Q 009476 177 DKIRELTVSRSNSTVFKQAL---LSLAM-DSGL------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI 246 (534)
Q Consensus 177 ~kIt~a~l~~~~~~~r~~AL---~sL~t-D~gL------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L 246 (534)
..+.+.+ ..++...+..|+ ..|.. ++.. ...+|.++.++.+ .+..........+..|..+..-
T Consensus 57 ~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~ 129 (210)
T 4db6_A 57 PALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGNE 129 (210)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHH
Confidence 3344433 344555565544 44432 2221 2366777766633 2445555566666666654332
Q ss_pred ccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHH-----HHHHHHHHHhcCCCCCc
Q 009476 247 HIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS-----RVTRTLLHAFLDPTKSL 320 (534)
Q Consensus 247 ~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~-----RI~~tL~k~lldp~k~l 320 (534)
..+..+ +..+|.++.++- +.+..+|..|+..|..+|... +..+. .++..|.+.+.+ .+.
T Consensus 130 ~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~--~~~ 194 (210)
T 4db6_A 130 QIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQLQSH--ENE 194 (210)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHGGGC--SCH
T ss_pred HHHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCC----cHHHHHHHHCCCHHHHHHHHhC--CCH
Confidence 222222 457888877752 235689999999999999631 22222 345567777654 344
Q ss_pred hhhhhHHHHHHhhC
Q 009476 321 SQHYGAIQGLAALG 334 (534)
Q Consensus 321 ~t~YGAI~GL~aLG 334 (534)
..+.-|...|..|.
T Consensus 195 ~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 195 KIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666666554
No 112
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=53.80 E-value=14 Score=29.98 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009476 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (534)
Q Consensus 26 a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~n 69 (534)
...||+..+ -.|..++++|...+.+..+..+|.+|+..|++...
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 455666555 45899999999999999999999999999998643
No 113
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=53.46 E-value=13 Score=30.31 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 35 yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
-.|..++++|...+.+..+..+|.+|+..|++.
T Consensus 48 ADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 48 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 458889999999998888999999999999975
No 114
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=50.45 E-value=9.5 Score=30.33 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 27 ~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
..||+..+ -.|..++++|...+.+..+..+|.+|+..|++..
T Consensus 26 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 26 EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44554443 4578899999999998888999999999999764
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=48.64 E-value=2.4e+02 Score=29.24 Aligned_cols=132 Identities=19% Similarity=0.282 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 009476 228 SLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVT 306 (534)
Q Consensus 228 ~~L~~llrmv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~ 306 (534)
.++..|-++-+=++ .||+ .+.+++|.++.... +..-++|.+.+.+|+..|.+ +..+-++++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~---------d~~~~vRk~~a~FieEa~~~----~~el~~~~l 102 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQA---------DKSIEVRKFVIGFIEEACKR----DIELLLKLI 102 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGG---------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhcc---------CCcHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44444444444233 4554 34556666554432 33568999999999999986 567789999
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhc-ccc----hHHHHHhhhhh---hh-hHhhhhhhhHHHHHHHHHH
Q 009476 307 RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-LPN----LELYLKFLEPE---ML-LEKQKNEMKRHEAWRVYGA 377 (534)
Q Consensus 307 ~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~ll-lP~----L~~y~~~Le~~---l~-~~~~~~~~~r~ea~~v~~a 377 (534)
.+|...|.|+ .....=.+|.+...+=+.+.+-++ -|+ ....|+.+..- +. .-...|..+|..+.|+...
T Consensus 103 ~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 103 ANLNMLLRDE--NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 9998888753 445555677777766555555433 233 23555544211 11 1112455566666666555
Q ss_pred HH
Q 009476 378 LQ 379 (534)
Q Consensus 378 ll 379 (534)
++
T Consensus 181 VI 182 (386)
T 3o2t_A 181 LI 182 (386)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 116
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=48.63 E-value=46 Score=34.69 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDV-EY---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dv-ey---rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
++..++..|+ .++++++..++... +- +...+++.|.-++...+|.++|.+||..|+...
T Consensus 375 L~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 375 IKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 3444555677 59999999998876 32 356677788888888899999999999999873
No 117
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=48.17 E-value=1.9e+02 Score=33.60 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=77.0
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchh--------hHHH
Q 009476 233 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--------LQSR 304 (534)
Q Consensus 233 llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~--------L~~R 304 (534)
+-|..+=+-.|| +++|++|..++..- .++|-.+.+.|+..+..||.+++....+ --.-
T Consensus 524 lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 524 VGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 345555554443 34666666665532 2446689999999999999988753311 2345
Q ss_pred HHHHHHHHhcC-CCCCchhhhhHHHHHHh-hChhh-----hHhhcccchHHHHHhhhhhhhhH----hhhhhhhHH-HHH
Q 009476 305 VTRTLLHAFLD-PTKSLSQHYGAIQGLAA-LGPSV-----VHLLILPNLELYLKFLEPEMLLE----KQKNEMKRH-EAW 372 (534)
Q Consensus 305 I~~tL~k~lld-p~k~l~t~YGAI~GL~a-LG~~a-----Vr~lllP~L~~y~~~Le~~l~~~----~~~~~~~r~-ea~ 372 (534)
|.+.+.+++.+ +.+.....|.||..+.. +|+.. ++.+ +|.+..-|+.|-...... ...+..++. -..
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L-~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il 668 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDL-MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH-THHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHH-HHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHH
Confidence 77777777642 22345567777776554 45432 3332 444444454443221000 000111211 334
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q 009476 373 RVYGALQCAAGLCVYDRLKT 392 (534)
Q Consensus 373 ~v~~all~a~g~~~~~~~~~ 392 (534)
++.+++-.++|..+...+..
T Consensus 669 ~~~~~v~~~lg~~f~~~~~~ 688 (1023)
T 4hat_C 669 KTNVAVCTSMGADFYPQLGH 688 (1023)
T ss_dssp HHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHH
Confidence 45666666777655554443
No 118
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=47.96 E-value=78 Score=33.99 Aligned_cols=116 Identities=5% Similarity=0.026 Sum_probs=69.4
Q ss_pred CChHHHHH---HHHHhhhcCCc-------cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhH
Q 009476 187 SNSTVFKQ---ALLSLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 256 (534)
Q Consensus 187 ~~~~~r~~---AL~sL~tD~gL-------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLl 256 (534)
++...+.. +|..|..+..- ...+|.++..+.+. .+........+.+..|..++......+-...+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 44444544 44556665541 13466666555421 24555556666667777776533333334578
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCC
Q 009476 257 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 316 (534)
Q Consensus 257 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~lldp 316 (534)
|.++.++- .....+|..|+..|..|+......-..+ +..++..|.+.|.++
T Consensus 101 ~~Lv~lL~---------~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 101 PALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHTT---------CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHh---------CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 88777752 1246899999999999998754322222 345677888888765
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=47.00 E-value=2e+02 Score=31.08 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=86.8
Q ss_pred ccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHH---HH---HHhhhcCCccccchhHHHHHHHHHhh--h--cCCHHH
Q 009476 160 IRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQ---AL---LSLAMDSGLHPLVPYFTYFISEEVTR--S--LKNFSL 229 (534)
Q Consensus 160 iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~---AL---~sL~tD~gL~qLLPYfv~FI~e~V~~--n--l~nl~~ 229 (534)
+++..+.++++|.+.|+...+.-++..-....+.- .| ...++-+|.|+|+. +|.++..- . ..|...
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~----ii~eQa~L~~~f~~sD~e~ 237 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE----LVAEQADLEQTFNPSDPDC 237 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH----HHHHHHTTTSCCCSSCHHH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH----HHHHHHhccCCCCCcCHHH
Confidence 56677788999999998777766664322333443 33 33455566666654 44554322 1 135555
Q ss_pred HHH---HHHHHHHhhcCCCc----ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc--hh
Q 009476 230 LFA---LMRVARSLLRNPHI----HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QN 300 (534)
Q Consensus 230 L~~---llrmv~ALl~Np~L----~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y--~~ 300 (534)
+.+ .++++-- +-.+.. +++.|..+++| . -..+......+.|.||-. ++++.++.-.|..- ..
T Consensus 238 vdRlI~C~~~ALP-~FS~~v~StkFv~y~~~kIlP-----~-l~~L~e~~~~~~~kL~LL--K~lAE~s~~~~~~e~a~~ 308 (507)
T 3u0r_A 238 VDRLLQCTRQAVP-LFSKNVHSTRFVTYFCEQVLP-----N-LGTLTTPVEGLDIQLEVL--KLLAEMSSFCGDMEKLET 308 (507)
T ss_dssp HHHHHHHHHHHGG-GCBTTBCCHHHHHHHHHHTGG-----G-TTCCCCC--CCCHHHHHH--HHHHHHHTTCCCCTTHHH
T ss_pred HHHHHHHHHHHHH-HhccCCChHHHHHHHHHhhcc-----c-hhhccccccchHHHHHHH--HHHHHHccCCCccchHHH
Confidence 444 4444422 222333 44555566666 1 122322111234777543 56777777666222 33
Q ss_pred hHHHHHHHHHHHhcCCCCC-----------------chhhhhHHHHHHhhChhhhHhh
Q 009476 301 LQSRVTRTLLHAFLDPTKS-----------------LSQHYGAIQGLAALGPSVVHLL 341 (534)
Q Consensus 301 L~~RI~~tL~k~lldp~k~-----------------l~t~YGAI~GL~aLG~~aVr~l 341 (534)
+-+-|..+|++.+ |..| ++-.-=-++.++.||.++-..+
T Consensus 309 ~l~~iy~~L~~ym--P~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 309 NLRKLFDKLLEYM--PLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHTTS--CCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHHHHHC--CCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 5556666666654 3322 2222334556777777665544
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=46.51 E-value=57 Score=31.86 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=49.2
Q ss_pred ChHHHHHHHHH-----cCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 5 PKETIEVIAQS-----IGVYNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 5 ~~e~V~~iAes-----~Gi~~lsdeaa~~La~dve------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
+.+.+..+.+. .+-..+++++++.+++.+. .++..+++.|..++...++.++|.+||..|+...
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34445544442 2224689999999999888 5677888999888888888999999999999765
No 121
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.44 E-value=15 Score=36.02 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=39.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----ccCHhhHHHHHh
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT----VLTANDVDSALN 66 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~----kLt~~DIn~AL~ 66 (534)
++.+++.-|+ .++++++..|++...-.+|++++..-+....++|. .+|.+||..++.
T Consensus 201 l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 201 LRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 3444455677 59999999999987766666655554444443332 899999998876
No 122
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=44.06 E-value=69 Score=35.78 Aligned_cols=117 Identities=6% Similarity=0.020 Sum_probs=66.0
Q ss_pred CCChHHHHHHHH---HhhhcCC-------ccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009476 186 RSNSTVFKQALL---SLAMDSG-------LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (534)
Q Consensus 186 ~~~~~~r~~AL~---sL~tD~g-------L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqL 255 (534)
..+...+..|+. .|..+.. ....+|.++.++... .+........+.+..|..++.-.-.-.-...
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 445556665554 4444321 224566666665432 2455555556666666665432111112346
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCC
Q 009476 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 316 (534)
Q Consensus 256 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~lldp 316 (534)
+|.++.++- ..+-.+|..|+..|..||..+...-..+ ...++..|.+.+.++
T Consensus 236 I~~Lv~lL~---------~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 236 IPALVNMLG---------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHc---------CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 777777652 1246899999999999998754422222 234666788888754
No 123
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=43.26 E-value=1e+02 Score=31.26 Aligned_cols=140 Identities=6% Similarity=0.034 Sum_probs=76.1
Q ss_pred HHHHHHHhhcCCChHHHHHHH---HHhhhcCCc-------cccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 009476 176 FDKIRELTVSRSNSTVFKQAL---LSLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH 245 (534)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL---~sL~tD~gL-------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~ 245 (534)
...+.+. +..+++..+..|+ ..|..+..- ...+|.++..+... .+........+.+..|..++.
T Consensus 19 i~~Lv~l-L~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 19 IPELTKL-LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCch
Confidence 3344443 3344555555544 444443221 13566666665431 255555566666677766654
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCCCCchhhh
Q 009476 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQHY 324 (534)
Q Consensus 246 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~lldp~k~l~t~Y 324 (534)
..-.-.-...+|.++.++- .++..+|..|+..|..+|......-..+ +..++..|.+.+.+++ .....
T Consensus 93 ~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~ 161 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLA 161 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--HHHHH
T ss_pred hHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--HHHHH
Confidence 2211222357887777642 2236899999999999998654322222 3456778888887643 33344
Q ss_pred hHHHHHHh
Q 009476 325 GAIQGLAA 332 (534)
Q Consensus 325 GAI~GL~a 332 (534)
-+..+|..
T Consensus 162 ~~~~~L~~ 169 (529)
T 1jdh_A 162 ITTDCLQI 169 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334433
No 124
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.47 E-value=77 Score=30.72 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 17 GVYNLSSDVALALAPDVEY------R-VREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 17 Gi~~lsdeaa~~La~dvey------r-lreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++ .+++++...|+..... | +..+++.|..++.-.+|..++.+||..|+..
T Consensus 265 ~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 55 7999999999988765 3 5677777888888889999999999999876
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=42.12 E-value=1.5e+02 Score=35.04 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 009476 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (534)
Q Consensus 230 L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 309 (534)
+..+++.+.....++++. ..++|.++..+++-.. +|=.+|..+-.+++..+.-++ ..+.+-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~~~------~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNFDT------KDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHCCC------SCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhCCC------CChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 344444444444444431 1456666666554211 233699999999988876555 4578888899988
Q ss_pred HHHhcCCCC----------CchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009476 310 LHAFLDPTK----------SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (534)
Q Consensus 310 ~k~lldp~k----------~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (534)
.+.+.|+.. .-..+.=|-..|..|..+.= ..++|++..+...++..+...+ .....|-..+|.||+
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~l~~~~---~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQLLSNEL---LLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHSTT---TSCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCcc---cccHHHHHHHHHHHH
Confidence 888876211 11234555566666766554 4578999999998877664211 034556666788876
Q ss_pred HHhhh-hhhhhhhhh--hcCCCccccccc
Q 009476 380 CAAGL-CVYDRLKTV--LLRPPKQSRWES 405 (534)
Q Consensus 380 ~a~g~-~~~~~~~~~--~~~~~~~~~~~~ 405 (534)
..+.. .-+++-..+ ...+|....|.+
T Consensus 654 ~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 654 LISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 65322 124444443 345777777774
No 126
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.86 E-value=1.5e+02 Score=32.16 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhc-CCChHHHHHHH---HHhhhcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCccc
Q 009476 173 QLYFDKIRELTVS-RSNSTVFKQAL---LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHI 248 (534)
Q Consensus 173 Q~Yf~kIt~a~l~-~~~~~~r~~AL---~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~I 248 (534)
+.|...+... +. .+|...++.|| ..|.++..+..++..+..|+.+. |.+.-..+++-+..+..+=.=..
T Consensus 367 ~~~~~~i~~~-L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~------d~~~~~~~v~~I~~la~k~~~~~ 439 (621)
T 2vgl_A 367 KTHIETVINA-LKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETA------DYSIREEIVLKVAILAEKYAVDY 439 (621)
T ss_dssp HTTHHHHHHH-HTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHH-hccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcCCcH
Confidence 4444455443 34 45566666665 44566667888888888887641 32222223333333332111123
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 009476 249 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 328 (534)
Q Consensus 249 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~ 328 (534)
+-|+.-|+. ++..- |+. +.+.+...+..|+.+ .+.++..+...|...+.||...-.-...|++
T Consensus 440 ~~~v~~Ll~-ll~~~-----~~~-------v~~ev~~~l~~ii~~----~~~~~~~~~~~l~~~l~~~~~~~~li~~~~w 502 (621)
T 2vgl_A 440 TWYVDTILN-LIRIA-----GDY-------VSEEVWYRVIQIVIN----RDDVQGYAAKTVFEALQAPACHENLVKVGGY 502 (621)
T ss_dssp HHHHHHHHH-HHHHH-----GGG-------SCSHHHHHHHHHHGG----GCSCHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhh-----ccc-------chHHHHHHHHHHHhC----ChhHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 455554443 22221 111 122233344445544 3678888999999999988766555567778
Q ss_pred HHHhhChhhhH
Q 009476 329 GLAALGPSVVH 339 (534)
Q Consensus 329 GL~aLG~~aVr 339 (534)
.|.+.|...-.
T Consensus 503 ilGEy~~~~~~ 513 (621)
T 2vgl_A 503 ILGEFGNLIAG 513 (621)
T ss_dssp HHHHHTHHHHS
T ss_pred HhcchHHHhcc
Confidence 88888876544
No 127
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=40.63 E-value=5.1e+02 Score=30.43 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=50.0
Q ss_pred hcCCccccchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH---hcc-ccCCCCC---
Q 009476 201 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL---VSK-RLGNRFS--- 273 (534)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCl---l~k-~l~~~~~--- 273 (534)
..+.++++++++..|... .+...-...+.+-.+++++..+..++.+..+++.++.++ +.| .......
T Consensus 345 ~~~~l~~~l~~lL~~t~~------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~ 418 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTH------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS 418 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTH
T ss_pred ChhHHHHHHHHHHHHHhC------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcc
Confidence 344556666666655532 244444445555556777765443344444555555444 333 2211000
Q ss_pred ---------------CcchHHHHHHHHHHHHHHHHhC
Q 009476 274 ---------------DNHWDLRNFVADLIASICTRFG 295 (534)
Q Consensus 274 ---------------~~hw~LRd~AA~lL~~I~~k~~ 295 (534)
..-|.+|...+.++..||..+.
T Consensus 419 ~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 419 CEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 1247899999999999998763
No 128
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=39.34 E-value=15 Score=34.23 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCCCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 8 TIEVIAQSIGVYNLSSD-VALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsde-aa~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
-++..++..|+. .+++ ....|+.... -.|+.++++|...+...++..++.+|+..|++.
T Consensus 185 il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 185 IFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 455667788884 5544 3466776543 368899999999988888999999999999875
No 129
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=39.03 E-value=40 Score=33.05 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.++.+++..|+ .++++++..|++...-.++.+.+..-+....+ ..++|.+||+.++.
T Consensus 186 ~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 186 QLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhC
Confidence 44555677788 59999999999888777777766666655555 46799999988874
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=38.85 E-value=24 Score=33.53 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 26 a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
...|+...+ ..|+.++++|...+...++..+|.+|+..|++..
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 445555544 3689999999999999999999999999999763
No 131
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=38.85 E-value=37 Score=37.95 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhH---
Q 009476 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQ--- 302 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~--- 302 (534)
+.......+..+..|..+..-. .-...++|.++..+ ...+|.+|..|+.+|+.|+... +..+
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---------~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i 437 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---------GSDDINVVTCAAGILSNLTCNN----YKNKMMV 437 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHTSSC----HHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhCC----HHHHHHH
Confidence 3444555566666666655321 12356788777764 1357899999999999997621 1111
Q ss_pred --HHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 303 --SRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 303 --~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
...+..|.+.|.++...-...+-|+.+|..|.
T Consensus 438 ~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 438 CQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 12344555555543333366777888887774
No 132
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=38.73 E-value=2.1e+02 Score=33.12 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=58.2
Q ss_pred cccchhHHHHHHHHHhhhcC---CHHH----HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchH
Q 009476 206 HPLVPYFTYFISEEVTRSLK---NFSL----LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWD 278 (534)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~---nl~~----L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~ 278 (534)
..-+|+++.++..-+...+. +... +..+-|...=+..+| +.+|++|..++..+.- .+.+=.
T Consensus 485 ~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---------~~l~~~L~~ll~~~gl---~~~~~~ 552 (980)
T 3ibv_A 485 DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES---------AAIPALIEYFVGPRGI---HNTNER 552 (980)
T ss_dssp SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---------TTHHHHHHHHTSTTTT---TCCCTT
T ss_pred cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHhccccc---cCCChh
Confidence 35567777776655543332 1111 222334444444443 5677888887763221 123447
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc
Q 009476 279 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (534)
Q Consensus 279 LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 314 (534)
+|..|+.++.++|+.+...-..--..|+..+...|.
T Consensus 553 V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 553 VRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp THHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 899999999999999876554444567777776665
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.70 E-value=1.3e+02 Score=29.09 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 19 YNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 19 ~~lsdeaa~~La~dve------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
..++++++..+++... ..+.++++.|...+...++.++|.+||..|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999998876 2466788888888887788899999999998764
No 134
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=37.87 E-value=20 Score=30.23 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 336 (534)
+.+|.+|..|+..|+.+.. ++.+..|.+.+.|+ .....+.|+.+|..+|..
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSH
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcH
Confidence 4679999999999987642 34566677777654 567889999999999853
No 135
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=36.63 E-value=62 Score=35.07 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 18 VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 18 i~~lsdeaa~~La~dve-------------yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
...+++++...|.+.-. -.+..+++.|..+++...|..++.+||..|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 45799999999988653 236778999999999999999999999999954
No 136
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=35.35 E-value=48 Score=27.73 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccCHhhHHHHHh
Q 009476 4 VPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-------RTVLTANDVDSALN 66 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi----~~lsdeaa~~La~dveyrlreIiqeA~Kfmrhsk-------R~kLt~~DIn~AL~ 66 (534)
+|+++|-+|.. ... ++++.|+...+++.++-.+||.+-.|..-.+... ...|+.+|.+.---
T Consensus 2 ip~~llaRIL~-~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaG 74 (88)
T 3v9r_B 2 LSKEALIKILS-QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVG 74 (88)
T ss_dssp CCSHHHHHHHT-TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHH
Confidence 78888888887 444 3689999999999999999999988864443322 24788888877543
No 137
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=35.28 E-value=2.9e+02 Score=31.46 Aligned_cols=141 Identities=15% Similarity=0.187 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH------HhCCCchh
Q 009476 227 FSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT------RFGHVYQN 300 (534)
Q Consensus 227 l~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~------k~~~~y~~ 300 (534)
........+++.+|..|+...-.--=+.-+|++|..+....- ..+ ..|..||..|++|.- -|+ .|..
T Consensus 471 ~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~-~~~~ 543 (778)
T 3opb_A 471 PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFK-KYSA 543 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSS-SSCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcC-CCcc
Confidence 344455678888888886654433334567888777644321 011 589999999999984 233 1221
Q ss_pred hHHHHHHHHHHHhc-CCCC-----------CchhhhhHHHHHHhhCh------hhhHhhcccchHHHHHhhhhhhhhHhh
Q 009476 301 LQSRVTRTLLHAFL-DPTK-----------SLSQHYGAIQGLAALGP------SVVHLLILPNLELYLKFLEPEMLLEKQ 362 (534)
Q Consensus 301 L~~RI~~tL~k~ll-dp~k-----------~l~t~YGAI~GL~aLG~------~aVr~lllP~L~~y~~~Le~~l~~~~~ 362 (534)
+ -.++-|.+.|. +|.. +.-.+|-|+.+|..|-. +.+|..|+-. ..+|..|+.-|..
T Consensus 544 ~--~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s--- 617 (778)
T 3opb_A 544 L--NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD--- 617 (778)
T ss_dssp T--THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC---
T ss_pred c--cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC---
Confidence 1 35566666655 2332 12348999999888722 3456555432 1366666666643
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 009476 363 KNEMKRHEAWRVYGALQC 380 (534)
Q Consensus 363 ~~~~~r~ea~~v~~all~ 380 (534)
.+..+|..|..+...|..
T Consensus 618 ~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMS 635 (778)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 356777888888877775
No 138
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=34.99 E-value=1.5e+02 Score=34.92 Aligned_cols=120 Identities=10% Similarity=0.141 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchh--------hHHHHHHHHHHHhcC-CCCCchhhhhHHHHHHh-hChh-----hh
Q 009476 274 DNHWDLRNFVADLIASICTRFGHVYQN--------LQSRVTRTLLHAFLD-PTKSLSQHYGAIQGLAA-LGPS-----VV 338 (534)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~k~~~~y~~--------L~~RI~~tL~k~lld-p~k~l~t~YGAI~GL~a-LG~~-----aV 338 (534)
+.|=.+.+.|+..+..||.+++...-+ .-.-|.+.+.+++.+ +.+...+.|.|+.-+.+ .|++ .+
T Consensus 577 ~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i 656 (1073)
T 3gjx_A 577 ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLI 656 (1073)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 345589999999999999998865422 335577777777554 34567788888776554 5643 35
Q ss_pred HhhcccchHHHHHhhhhhhhhH---hhhhhhhHH-HHHHHHHHHHHHhhhhhhhhhhhh
Q 009476 339 HLLILPNLELYLKFLEPEMLLE---KQKNEMKRH-EAWRVYGALQCAAGLCVYDRLKTV 393 (534)
Q Consensus 339 r~lllP~L~~y~~~Le~~l~~~---~~~~~~~r~-ea~~v~~all~a~g~~~~~~~~~~ 393 (534)
+.++-|.+..+.+.++..-... +..+..++. -..|+..+.-.++|..+...+...
T Consensus 657 ~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i 715 (1073)
T 3gjx_A 657 EKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 715 (1073)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHH
Confidence 5555555555555444221100 001111222 344566666667777666655444
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.61 E-value=74 Score=30.24 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.++.+++..|+ .++++++..|++...-.++.+++..-+..... ..+|.+||..++.
T Consensus 174 ~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 174 RLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 34555556788 59999999999988877777776665555443 4799999998875
No 140
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=34.55 E-value=64 Score=32.86 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC-CCchhhHHH
Q 009476 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG-HVYQNLQSR 304 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~-~~y~~L~~R 304 (534)
+.......+..+..|..++.-. .....++|.++..+- .....+|..|+..|+.++.... ....-.+..
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 4445555666666676654321 234577887777651 2456899999999999976310 000011122
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 305 I~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
.+..|.+.+.++.........|+..|..|.
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344556665543444567788888888874
No 141
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=34.14 E-value=4.6e+02 Score=28.03 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=59.7
Q ss_pred ccccchhHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCc
Q 009476 205 LHPLVPYFTYFISEEVTRS---------LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDN 275 (534)
Q Consensus 205 L~qLLPYfv~FI~e~V~~n---------l~nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~ 275 (534)
+..++|.|+..+.+-+..+ ..+--....+++++..+..+. -....-+..+++.+ +.+-... ...
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l----~~~~~~~--~~~ 289 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQV----ATNTETS--KNV 289 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHH----HHTSCCS--STH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----Hhccccc--cch
Confidence 3456676766665544321 224344455667776666431 00111111222222 2211111 122
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009476 276 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (534)
Q Consensus 276 hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 336 (534)
.-++.-.|++++..+ +. .+.++......|.+.+.+ +.....|=|+..|..++..
T Consensus 290 ~~aV~~ea~~~i~~l----~~-~~~l~~~a~~~L~~~L~~--~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 290 GNAILYETVLTIMDI----KS-ESGLRVLAINILGRFLLN--NDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHHHHHHHHHHHHS----CC-CHHHHHHHHHHHHHHHTC--SSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CC-CHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHhh
Confidence 346666666666553 22 355666677777777654 3346778888888877653
No 142
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.78 E-value=46 Score=31.66 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
.++.+++..|+ .++++++..|+....-.++++++..-+.... ...+|.+||..++
T Consensus 169 ~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 169 RLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 45566677788 5999999999988877788877776665543 3479999998875
No 143
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=32.56 E-value=3.5e+02 Score=26.14 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009476 278 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (534)
Q Consensus 278 ~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 357 (534)
.+|---+..|..|.+. ||.+-+-|.+-+...+.+|+ -.-.--|+-=+.+||.+-.| .+.|+|+.+...|...
T Consensus 122 kikIn~~yaLeeIara----nP~l~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~-yv~PfLprL~aLL~D~- 193 (253)
T 2db0_A 122 KTKINVSYALEEIAKA----NPMLMASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFK-YVNPFLPRIINLLHDG- 193 (253)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHH-HHGGGHHHHHGGGGCS-
T ss_pred cceecHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCcc-ccCcchHHHHHHHcCc-
Confidence 6677777778888875 78999999999999988655 45567788888999998888 4899999998877543
Q ss_pred hhHhhhhhhhHHHH
Q 009476 358 LLEKQKNEMKRHEA 371 (534)
Q Consensus 358 ~~~~~~~~~~r~ea 371 (534)
|+++|.-|
T Consensus 194 ------deiVRaSa 201 (253)
T 2db0_A 194 ------DEIVRASA 201 (253)
T ss_dssp ------SHHHHHHH
T ss_pred ------chhhhHHH
Confidence 56666654
No 144
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=31.42 E-value=98 Score=30.33 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHc---CC--CCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 4 VPKETIEVIAQSI---GV--YNLSSDVALALAPDVE---Y---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 4 ~~~e~V~~iAes~---Gi--~~lsdeaa~~La~dve---y---rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
++.+.+..+.+.. |. ..+++++++.+++... - ++.++++.|..++. ++.++|.+||..|+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 3455555555543 33 3688999999998887 2 35567777777665 56789999999999775
No 145
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=28.63 E-value=1.8e+02 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 17 GVYNLSSDVALALAPDVEY-----------------------RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 17 Gi~~lsdeaa~~La~dvey-----------------------rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
++ .+++++...+++-+.. .+..+++.|.-++.-.+|..++.+||..|++.
T Consensus 224 ~v-~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KV-TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TC-BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44 5899999988875531 24456777777788889999999999999875
No 146
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=28.13 E-value=45 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHHh
Q 009476 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALN 66 (534)
Q Consensus 38 reIiqeA~Kfmrhsk--------------R~kLt~~DIn~AL~ 66 (534)
.++|+.|++|+.+-+ .|-||.++|+.||+
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357888999988764 34699999999986
No 147
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=27.73 E-value=2.3e+02 Score=32.79 Aligned_cols=182 Identities=10% Similarity=0.119 Sum_probs=106.5
Q ss_pred cCcHHHHHHHHHHHHHhhcC---------CC----hHHHHHHHHHhhhcC----------CccccchhHHHHHHHHHhhh
Q 009476 167 VLSKELQLYFDKIRELTVSR---------SN----STVFKQALLSLAMDS----------GLHPLVPYFTYFISEEVTRS 223 (534)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~---------~~----~~~r~~AL~sL~tD~----------gL~qLLPYfv~FI~e~V~~n 223 (534)
.+....+.||.+++++++.+ ++ ++ ++.+..+|.+- |-...+++...+|..-+...
T Consensus 371 ~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed--~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~ 448 (980)
T 3ibv_A 371 ELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE--EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTA 448 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHccCCCccccccccchhH--HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 46677788999999887531 01 10 01111222222 12334444444555444443
Q ss_pred c-----CCHHHHHHHHHHHHHh---hcCCCcc---cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009476 224 L-----KNFSLLFALMRVARSL---LRNPHIH---IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT 292 (534)
Q Consensus 224 l-----~nl~~L~~llrmv~AL---l~Np~L~---IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~ 292 (534)
+ .++..+...+..+.++ +.|.... ..+++.+|++.+...+-+ .+ +.+.|-.+|.-+-.++++-++
T Consensus 449 l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s-~i---~~~~hp~V~~~~~~~l~rys~ 524 (980)
T 3ibv_A 449 ATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS-QV---CRHPHPLVQLLYMEILVRYAS 524 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS-ST---TTCCCHHHHHHHHHHHHHTGG
T ss_pred hcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC-CC---CCCCCHHHHHHHHHHHHHHHH
Confidence 3 2355566555555554 3332222 345666777655444332 22 236799999999999998887
Q ss_pred HhCCCchhhHHHHHHHHHH--HhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhh
Q 009476 293 RFGHVYQNLQSRVTRTLLH--AFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 358 (534)
Q Consensus 293 k~~~~y~~L~~RI~~tL~k--~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~ 358 (534)
=+.. .+..-+.++..+.. .+.|+++.... -|...|..|-.+. +..+.|++..++..+++.+.
T Consensus 525 ~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~--~a~~af~~f~~~~-~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 525 FFDY-ESAAIPALIEYFVGPRGIHNTNERVRP--RAWYLFYRFVKSI-KKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp GGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHH--HHHHHHHHHHHHT-TTTCSSSHHHHHHHTTGGGC
T ss_pred HHhc-CchhHHHHHHHHhccccccCCChhHHH--HHHHHHHHHHHHh-hHHhhhHHHHHHHHHHHhhc
Confidence 6654 45666777777777 77766655443 3555566665443 44678999999999988775
No 148
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=27.66 E-value=1.1e+02 Score=25.64 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 009476 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVRE 39 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlre 39 (534)
|..+.++.|+.+|.-.-+ .++++-...++.++...+.-
T Consensus 1 Mm~i~~e~v~~iA~LArL-~l~eeE~~~~~~~l~~Il~~ 38 (100)
T 3ip4_C 1 MTKVTREEVEHIANLARL-QISPEETEEMANTLESILDF 38 (100)
T ss_dssp --CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 667999999999999999 69999888888877655443
No 149
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=27.37 E-value=91 Score=27.45 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009476 8 TIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (534)
Q Consensus 8 ~V~~iAes~Gi----~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~ 54 (534)
-|+.|++...- -+...++..+|-+-.|..+-.+.+++--|+.|++|.
T Consensus 10 LVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 10 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp HHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 46677776532 368999999999999999999999999999999775
No 150
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=27.14 E-value=1.1e+02 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVEY---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dvey---rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nv 70 (534)
-++..++..|+ .++++++..|+....- .+..+++.+..++....+..++.+|+..++...++
T Consensus 192 il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 192 ILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 34556667787 5999999999984332 35566777777777777889999999999987543
No 151
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=26.81 E-value=5.4e+02 Score=26.53 Aligned_cols=139 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhh------hcCCccc-----cchhHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 009476 176 FDKIRELTVSRSNSTVFKQALLSLA------MDSGLHP-----LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (534)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~------tD~gL~q-----LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np 244 (534)
.+++++.+-++ |.+.+..|...+| .+|-++. .+|.|++|+... ++......-...+..|....
T Consensus 59 i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCC
Confidence 35666766543 3444444444333 4454443 589999888421 12222222223333333221
Q ss_pred Ccccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHH-----HHHHHHHhcCCCC
Q 009476 245 HIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-----TRTLLHAFLDPTK 318 (534)
Q Consensus 245 ~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI-----~~tL~k~lldp~k 318 (534)
.=+-.--+ +-.+|.++.++- ..+-.+|+.|+..|+.|+.. .+..+..+ +..|...+.+++.
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~---------s~~~~v~e~A~~aL~nLa~d----~~~~r~~v~~~G~i~~Ll~lL~~~~~ 199 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAVWALGNIAGD----GSAFRDLVIKHGAIDPLLALLAVPDL 199 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred HHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHcCChHHHHHHHHhccc
Confidence 11111111 236888887762 23458999999999999842 12333333 3456666654432
Q ss_pred C---chhhhhHHHHHHhh
Q 009476 319 S---LSQHYGAIQGLAAL 333 (534)
Q Consensus 319 ~---l~t~YGAI~GL~aL 333 (534)
. .....-+...|..+
T Consensus 200 ~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNL 217 (510)
T ss_dssp GGSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 2 22233444455444
No 152
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=26.48 E-value=2.2e+02 Score=27.66 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 20 NLSSDVALALAPDV---------E---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 20 ~lsdeaa~~La~dv---------e---yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
.++++++..+++.. . .++.++++.|...+...++.+++.+||..|+...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 68999999999988 3 4577888888888888888999999999998764
No 153
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.13 E-value=1.2e+02 Score=31.08 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred cCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhHHHHHHHHHhhhc--CCHHHHHHHHHHHHHhhcCC
Q 009476 167 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNP 244 (534)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl--~nl~~L~~llrmv~ALl~Np 244 (534)
+.+.|+-.+...-.+.++...++-.|+.|+-+.. .|.+..|-.+.-+.+++..-+ +|.-....-+.+...+..+.
T Consensus 131 I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 131 ITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Q ss_pred CcccccchhhhHH-----HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhcCCCC
Q 009476 245 HIHIEPYLHQMMP-----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTK 318 (534)
Q Consensus 245 ~L~IepYLHqLlP-----svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k~lldp~k 318 (534)
...+..-+.++-. +...|.+-+ ++.+++... +.....+.+.+...|. ++
T Consensus 208 ~~a~~kLv~~l~~~~l~~~~~q~~llr-----------------------~l~~~~~~d~~~~~~~~~~~l~~~L~--~~ 262 (355)
T 3tjz_B 208 RLAVSKMISKFTRHGLKSPFAYCMMIR-----------------------VASRQLEDEDGSRDSPLFDFIESCLR--NK 262 (355)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHH-----------------------HHTCC-----------------CCCC--CS
T ss_pred hHHHHHHHHHHhcCCCcChHHHHHHHH-----------------------HHHHhccccchhhHHHHHHHHHHHHc--CC
Q ss_pred CchhhhhHHHHHHhhCh--hhhHhhcccchHHHHH
Q 009476 319 SLSQHYGAIQGLAALGP--SVVHLLILPNLELYLK 351 (534)
Q Consensus 319 ~l~t~YGAI~GL~aLG~--~aVr~lllP~L~~y~~ 351 (534)
+-...|.|+..+..+.. ..+.......|..++.
T Consensus 263 ~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLs 297 (355)
T 3tjz_B 263 HEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCS 297 (355)
T ss_dssp SHHHHHHHHHHHTC-----------CCCTHHHHHH
T ss_pred ChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc
No 154
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=26.12 E-value=1.6e+02 Score=23.84 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCC
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPD-----VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASG 79 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~d-----veyrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~nvEPLyGy~s~ 79 (534)
+|..+|+.+|++ ..-....+.+. -+|..+.-++.|.+.+..+.. .++..||-..+ ||.+.
T Consensus 20 ~~~~lA~~~~~s--~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~-~~si~~IA~~~---------Gf~~~ 84 (108)
T 3mn2_A 20 TIEKLTALTGIS--SRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGAT-PTTVTAAALSC---------GFSNL 84 (108)
T ss_dssp CHHHHHHHHTCC--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSS-CCCHHHHHHHT---------TCCCH
T ss_pred CHHHHHHHHCCC--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHh---------CCCCH
Confidence 578889999884 22333434433 367777778899999988754 58888888776 88764
No 155
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=25.29 E-value=87 Score=23.87 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 009476 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYR-VREIMQEA 44 (534)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyr-lreIiqeA 44 (534)
+..+.|+.+.+++|+ ++.++-...++..++-. +.++|.++
T Consensus 17 ~t~~~I~~il~aaGv-eve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 17 INEENLKAVLQAAGV-EPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCC-CccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 567889999999999 69999999999988744 77777654
No 156
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=24.87 E-value=45 Score=32.48 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCcc-CHhhHHHHHhc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH-------AHRTVL-TANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~Kfmrh-------skR~kL-t~~DIn~AL~~ 67 (534)
++..++..|+ .+++++...|+... -.+|++..-..+.... .+.+.+ |.+||..++..
T Consensus 175 l~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 175 IKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 4455667788 69999999999877 5566654433333333 334568 99999999873
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.69 E-value=1.1e+02 Score=30.57 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------hCCCccCHhhHHHHHhcc
Q 009476 8 TIEVIAQSIGVYNLSSDVALALAPDVE----YRVREIMQEAIKCMRH------------AHRTVLTANDVDSALNLR 68 (534)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dve----yrlreIiqeA~Kfmrh------------skR~kLt~~DIn~AL~~~ 68 (534)
-++.+++..|+ .++++....|+...+ ..|+.++++|.-...+ .....++.+|+..|++..
T Consensus 259 il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 259 IVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 34556666676 488999998988665 3678888887665554 234679999999999753
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=24.38 E-value=72 Score=29.80 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=35.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 26 ALALAPDVEY----RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 26 a~~La~dvey----rlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
...+|....- .|+.++++|...+.+.+++.+|.+|++.|++..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 4556665543 688889999999999999999999999999864
No 159
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=24.37 E-value=65 Score=33.54 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNLR 68 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreI---iqeA~KfmrhskR~kLt~~DIn~AL~~~ 68 (534)
++..++..|+ .++++++..||....-.+|++ ++.+..++...++ .+|.+++..||+..
T Consensus 272 L~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 4455666788 599999999998876555554 5555555554454 69999999999764
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.08 E-value=61 Score=30.26 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=35.9
Q ss_pred CCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 21 LSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 21 lsdea-a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
+++++ ...||...+ -.|+.++++|...+...++..+|.+|+..|++
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 44444 566776655 35889999999998888888999999999874
No 161
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=24.06 E-value=1.4e+02 Score=24.53 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 009476 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVRE 39 (534)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrlre 39 (534)
|+ +.++.|+.+|+-.-+ .++++-...++.+++..+.-
T Consensus 4 M~-i~~e~V~~iA~LArL-~l~eeE~~~~~~~l~~Il~~ 40 (92)
T 3kfu_G 4 ME-LSPELLRKLETLAKI-RLSPEEEALLLQDLKRILDF 40 (92)
T ss_dssp -C-CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHH
Confidence 44 899999999999999 59999888888877655543
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.60 E-value=64 Score=33.87 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 26 a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
...||+..+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 455666544 468899999999999999999999999999964
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.54 E-value=85 Score=30.12 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dve---yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~~n 69 (534)
++..++..|+ .++++++..|+.... ..++.+++.+..++....+..++.+|+..++....
T Consensus 177 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 177 VMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4445556687 599999999988642 23555566555555555677899999999998754
No 164
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=23.48 E-value=41 Score=27.01 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhC--------------CCccCHhhHHHHHhccCC
Q 009476 39 EIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRNV 70 (534)
Q Consensus 39 eIiqeA~Kfmrhsk--------------R~kLt~~DIn~AL~~~nv 70 (534)
++|+.|++|+++-+ .|-||.++|+.||+--+.
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 57788888887754 346999999999998543
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.35 E-value=69 Score=34.00 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 26 a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
...||...+ -.|+.++++|..++.+.+|..+|.+|+..|++-
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 445555443 468899999999999999999999999999863
No 166
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=22.08 E-value=69 Score=30.53 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=35.9
Q ss_pred CCCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009476 20 NLSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (534)
Q Consensus 20 ~lsdea-a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~ 66 (534)
.+++++ ...||...+ -.|+.++++|...+...++..+|.+|+..|++
T Consensus 227 ~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 345444 556776554 35888999999998888888999999999974
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=22.06 E-value=1.2e+02 Score=28.78 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh------------CCCccCHhhHHHHHhc
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEY----RVREIMQEAIKCMRHA------------HRTVLTANDVDSALNL 67 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dvey----rlreIiqeA~Kfmrhs------------kR~kLt~~DIn~AL~~ 67 (534)
++.+++..|. .+++++...|+...+- .++.++++|.-.+.+. ....+|.+|+..|++.
T Consensus 198 l~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 198 LNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 3455556666 5888888888876542 5677777776555543 2357999999999875
No 168
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=21.99 E-value=7.2e+02 Score=26.28 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-CchhhHHH
Q 009476 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-VYQNLQSR 304 (534)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~-~y~~L~~R 304 (534)
+.......+..+..|..+..-. .....++|.++..+- ...+.+|..|+..|..++..... .-.-++..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 4555666677777777654321 234567777776641 34579999999999999863110 00011122
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009476 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (534)
Q Consensus 305 I~~tL~k~lldp~k~l~t~YGAI~GL~aLG 334 (534)
.+..|.+.+.+..........|+..|..|.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 455566666543333466778888888884
No 169
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.61 E-value=1.1e+02 Score=25.35 Aligned_cols=57 Identities=19% Similarity=0.071 Sum_probs=38.7
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHh
Q 009476 255 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 332 (534)
Q Consensus 255 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~a 332 (534)
.+|.++.++ .+.+|.+|..|+..|+.+.. ++....|.+.+.|++ ....+-|+.+|..
T Consensus 74 a~~~L~~~L---------~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~--~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLL---------EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT--GFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHH---------HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC--THHHHHHHHHGGG
T ss_pred HHHHHHHHH---------cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHh
Confidence 466666665 15678999999999998741 456677777776544 4556666666543
No 170
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.79 E-value=78 Score=33.44 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=33.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 26 a~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
...||...+ -.|+.++.+|..++.+.+|..+|.+|+..|++-
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344555433 458899999999999999999999999999974
No 171
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=20.77 E-value=43 Score=28.47 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=47.4
Q ss_pred chhhhhhhh-hhhhcccccchhhHHHHHHHHhhhccCccchhHHHHHHhcc-------ccccccCCcccc
Q 009476 470 SMLRHLQNE-KMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGE-------SMFSFTRKSELY 531 (534)
Q Consensus 470 ~~~~~~~~~-~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge-------~~l~f~p~~e~~ 531 (534)
++++++... ..-+.+-+..-+.-=|.|=+-|+..++.-+.-..|.||||+ +|=||||..-+-
T Consensus 13 ~a~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~Di~ 82 (98)
T 4fqn_A 13 SATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQ 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGGGGGGGGGGGSCHHHHH
T ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHHHHHhhccCCCChhhHH
Confidence 444555554 45556666777777788889999999999999999999998 488999976543
No 172
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=20.71 E-value=1.3e+02 Score=26.11 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccc
Q 009476 299 QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 345 (534)
Q Consensus 299 ~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~ 345 (534)
.+-+..|++.+...|.|-- ..|-++|+.+.|..+.+.+++|-
T Consensus 61 ~nW~~~l~~Lf~slf~D~I-----N~GR~vGfFdVGryVCeElL~~~ 102 (131)
T 3bl2_A 61 KNWKRDLSKLFTSLFVDVI-----NSGRIVGFFDVGRYVCEEVLCPG 102 (131)
T ss_dssp GGHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHhhHHHHHHHHHHHHh-----cccCeEeeeehHHHHHHHHhCCC
Confidence 4556678888887887643 47999999999999999999983
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=20.58 E-value=87 Score=29.82 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009476 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (534)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrlreIiqeA~KfmrhskR~kLt~~DIn~AL 65 (534)
++.+++..|+ .++++++..|+....-.+|++++..-+....+ ..+|.+||..++
T Consensus 178 l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 178 LRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 4445556688 59999999999988777777776655544332 378888887765
No 174
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.46 E-value=80 Score=33.79 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009476 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (534)
Q Consensus 27 ~~La~dve----yrlreIiqeA~KfmrhskR~kLt~~DIn~AL~~ 67 (534)
..||+..+ -.|+.++++|..++.+.+|+.+|.+|+..|++-
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44555443 368899999999999999999999999999964
Done!