Query 009477
Match_columns 534
No_of_seqs 397 out of 3084
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 13:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0337 ATP-dependent RNA heli 100.0 3.3E-94 7.2E-99 695.5 30.4 493 11-520 9-502 (529)
2 KOG0330 ATP-dependent RNA heli 100.0 1.9E-78 4.2E-83 581.2 34.1 374 19-396 57-430 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 5.6E-74 1.2E-78 585.7 36.3 370 24-394 92-469 (519)
4 KOG0338 ATP-dependent RNA heli 100.0 6.5E-73 1.4E-77 558.3 33.3 360 23-384 181-544 (691)
5 COG0513 SrmB Superfamily II DN 100.0 2.1E-71 4.5E-76 589.8 42.1 365 23-390 29-398 (513)
6 KOG0342 ATP-dependent RNA heli 100.0 2.5E-71 5.5E-76 547.2 34.7 422 22-479 81-508 (543)
7 KOG0328 Predicted ATP-dependen 100.0 8.4E-71 1.8E-75 507.6 28.0 373 17-394 21-394 (400)
8 KOG0340 ATP-dependent RNA heli 100.0 1.8E-70 3.8E-75 520.6 30.8 373 20-394 4-382 (442)
9 KOG0343 RNA Helicase [RNA proc 100.0 3.5E-70 7.5E-75 543.4 33.4 418 23-476 69-493 (758)
10 KOG0345 ATP-dependent RNA heli 100.0 1.6E-69 3.4E-74 530.8 36.7 427 22-483 3-441 (567)
11 KOG0333 U5 snRNP-like RNA heli 100.0 2.4E-69 5.2E-74 535.1 32.5 365 20-387 242-638 (673)
12 PRK04837 ATP-dependent RNA hel 100.0 7.7E-66 1.7E-70 540.4 43.4 369 22-393 7-382 (423)
13 PRK11634 ATP-dependent RNA hel 100.0 1.2E-64 2.6E-69 547.7 52.7 372 22-398 5-379 (629)
14 PTZ00110 helicase; Provisional 100.0 8.1E-65 1.8E-69 544.4 43.8 370 20-390 127-501 (545)
15 KOG0326 ATP-dependent RNA heli 100.0 4.9E-67 1.1E-71 490.1 20.9 370 20-395 82-451 (459)
16 PRK11776 ATP-dependent RNA hel 100.0 3.7E-64 8.1E-69 533.2 43.5 364 22-391 3-367 (460)
17 PRK04537 ATP-dependent RNA hel 100.0 4.9E-64 1.1E-68 540.1 44.0 371 23-395 9-386 (572)
18 PRK10590 ATP-dependent RNA hel 100.0 7.2E-64 1.6E-68 529.1 43.1 364 23-389 1-368 (456)
19 KOG0348 ATP-dependent RNA heli 100.0 2.1E-64 4.6E-69 500.7 31.9 452 20-486 133-654 (708)
20 PLN00206 DEAD-box ATP-dependen 100.0 3.9E-63 8.4E-68 529.9 42.7 369 21-391 119-493 (518)
21 KOG0341 DEAD-box protein abstr 100.0 3.7E-66 8.1E-71 495.0 14.2 364 20-387 167-543 (610)
22 PRK11192 ATP-dependent RNA hel 100.0 5.4E-62 1.2E-66 513.5 44.1 366 23-391 1-370 (434)
23 KOG0336 ATP-dependent RNA heli 100.0 9.2E-64 2E-68 481.5 25.1 368 19-389 215-588 (629)
24 PRK01297 ATP-dependent RNA hel 100.0 1.5E-60 3.2E-65 507.1 45.4 366 22-390 86-459 (475)
25 KOG0335 ATP-dependent RNA heli 100.0 1.8E-62 3.8E-67 492.9 28.2 365 22-387 73-458 (482)
26 KOG0339 ATP-dependent RNA heli 100.0 2E-61 4.3E-66 476.3 32.6 374 19-394 219-596 (731)
27 KOG0346 RNA helicase [RNA proc 100.0 1.2E-61 2.6E-66 471.4 29.0 364 22-386 18-423 (569)
28 KOG0347 RNA helicase [RNA proc 100.0 1E-61 2.2E-66 483.0 21.4 378 20-400 178-599 (731)
29 PTZ00424 helicase 45; Provisio 100.0 5E-59 1.1E-63 486.8 43.0 367 22-393 27-394 (401)
30 KOG0334 RNA helicase [RNA proc 100.0 4.6E-59 1E-63 498.1 31.5 374 19-393 361-740 (997)
31 KOG0327 Translation initiation 100.0 3E-59 6.4E-64 450.6 26.0 366 23-395 26-392 (397)
32 KOG0332 ATP-dependent RNA heli 100.0 1.3E-58 2.8E-63 442.0 25.8 362 22-390 89-461 (477)
33 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-54 4.5E-59 426.9 28.7 360 24-386 128-553 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 3.3E-53 7.1E-58 467.1 41.4 362 21-391 13-406 (742)
35 KOG4284 DEAD box protein [Tran 100.0 7.9E-53 1.7E-57 425.4 22.6 353 22-380 24-387 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 4.8E-51 1E-55 412.5 24.9 357 28-387 141-509 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 1.5E-48 3.2E-53 413.7 37.4 325 40-382 6-342 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 8.2E-48 1.8E-52 421.8 38.7 341 23-381 435-795 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 7.1E-47 1.5E-51 411.1 38.1 332 29-381 8-351 (607)
40 PRK02362 ski2-like helicase; P 100.0 1.3E-46 2.7E-51 418.9 33.0 338 23-373 1-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 2E-45 4.3E-50 413.1 39.5 338 30-371 18-396 (876)
42 TIGR00580 mfd transcription-re 100.0 4.8E-45 1E-49 406.0 40.8 322 29-373 435-770 (926)
43 KOG0329 ATP-dependent RNA heli 100.0 6.7E-48 1.5E-52 351.2 14.6 332 22-393 41-376 (387)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.6E-46 2.1E-50 400.5 33.9 315 41-372 12-390 (844)
45 TIGR01389 recQ ATP-dependent D 100.0 2.9E-45 6.3E-50 399.4 37.1 324 37-381 4-339 (591)
46 PRK00254 ski2-like helicase; P 100.0 1.7E-45 3.8E-50 408.8 34.2 338 24-375 2-390 (720)
47 PRK10689 transcription-repair 100.0 7.4E-44 1.6E-48 404.4 41.6 319 31-372 587-918 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 3.6E-43 7.8E-48 386.0 39.7 318 32-371 248-587 (681)
49 TIGR00643 recG ATP-dependent D 100.0 1.3E-42 2.8E-47 379.3 39.5 319 32-371 223-564 (630)
50 PHA02653 RNA helicase NPH-II; 100.0 4.9E-42 1.1E-46 370.0 38.5 312 47-375 166-516 (675)
51 PRK09401 reverse gyrase; Revie 100.0 2.1E-42 4.5E-47 393.4 34.8 283 41-345 77-410 (1176)
52 PRK01172 ski2-like helicase; P 100.0 1.8E-42 3.9E-47 383.0 32.9 334 23-374 1-379 (674)
53 PRK05580 primosome assembly pr 100.0 7.5E-41 1.6E-45 366.3 38.6 398 45-460 144-660 (679)
54 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.4E-40 3.1E-45 366.6 36.9 309 49-377 6-340 (819)
55 PRK09751 putative ATP-dependen 100.0 1E-40 2.2E-45 380.6 35.8 323 65-391 1-405 (1490)
56 COG1201 Lhr Lhr-like helicases 100.0 1.9E-40 4E-45 357.5 32.3 338 30-372 8-361 (814)
57 PRK11664 ATP-dependent RNA hel 100.0 3.4E-40 7.4E-45 364.6 35.2 307 50-376 10-342 (812)
58 PRK12898 secA preprotein trans 100.0 4.8E-40 1E-44 349.2 32.7 320 41-374 100-587 (656)
59 TIGR01054 rgy reverse gyrase. 100.0 7.7E-40 1.7E-44 373.0 36.2 290 34-344 67-408 (1171)
60 PRK14701 reverse gyrase; Provi 100.0 5.9E-40 1.3E-44 380.5 33.4 324 33-378 67-461 (1638)
61 COG1111 MPH1 ERCC4-like helica 100.0 2.7E-38 5.9E-43 315.6 35.5 330 42-379 12-489 (542)
62 PRK09200 preprotein translocas 100.0 4.8E-38 1.1E-42 340.6 39.5 322 41-375 75-543 (790)
63 PHA02558 uvsW UvsW helicase; P 100.0 2.9E-39 6.4E-44 344.5 29.5 303 43-364 112-443 (501)
64 TIGR00595 priA primosomal prot 100.0 4.3E-39 9.4E-44 340.6 30.3 375 64-456 1-487 (505)
65 TIGR03714 secA2 accessory Sec 100.0 1.9E-37 4.2E-42 332.9 38.2 320 46-375 69-539 (762)
66 KOG0349 Putative DEAD-box RNA 100.0 6.8E-40 1.5E-44 318.4 17.2 285 94-381 287-623 (725)
67 TIGR00963 secA preprotein tran 100.0 5E-37 1.1E-41 327.7 38.5 321 41-375 53-519 (745)
68 TIGR01587 cas3_core CRISPR-ass 100.0 3.8E-38 8.3E-43 324.2 28.6 299 62-373 1-336 (358)
69 COG0514 RecQ Superfamily II DN 100.0 8.7E-38 1.9E-42 325.8 30.1 325 37-381 8-345 (590)
70 COG1198 PriA Primosomal protei 100.0 4.2E-38 9.1E-43 337.3 22.8 420 26-460 157-713 (730)
71 PRK13766 Hef nuclease; Provisi 100.0 3.8E-35 8.2E-40 330.4 38.5 325 42-374 12-480 (773)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 6.2E-35 1.3E-39 298.2 31.4 291 49-358 1-357 (357)
73 PRK11131 ATP-dependent RNA hel 100.0 8.2E-35 1.8E-39 326.9 33.6 304 47-376 76-414 (1294)
74 COG1202 Superfamily II helicas 100.0 2.4E-35 5.3E-40 296.0 25.5 340 22-373 193-553 (830)
75 COG1204 Superfamily II helicas 100.0 4.4E-35 9.4E-40 320.2 29.1 336 28-373 14-408 (766)
76 COG1205 Distinct helicase fami 100.0 6.8E-34 1.5E-38 315.0 33.4 352 30-386 55-437 (851)
77 TIGR00603 rad25 DNA repair hel 100.0 5.3E-34 1.2E-38 306.4 29.7 308 45-376 255-610 (732)
78 KOG0354 DEAD-box like helicase 100.0 1.3E-33 2.9E-38 297.6 27.3 343 30-380 47-536 (746)
79 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.4E-31 3E-36 302.1 34.7 315 41-377 60-408 (1283)
80 PRK13104 secA preprotein trans 100.0 1.6E-30 3.5E-35 281.4 37.1 319 42-374 80-588 (896)
81 cd00268 DEADc DEAD-box helicas 100.0 1.4E-31 3E-36 253.2 25.0 202 25-227 1-202 (203)
82 PRK04914 ATP-dependent helicas 100.0 1.3E-30 2.9E-35 289.5 34.8 334 45-389 152-619 (956)
83 PRK12899 secA preprotein trans 100.0 5.7E-30 1.2E-34 276.6 36.6 336 26-374 65-682 (970)
84 COG1200 RecG RecG-like helicas 100.0 5.4E-30 1.2E-34 266.7 33.6 331 22-374 239-592 (677)
85 PRK12904 preprotein translocas 100.0 2.1E-29 4.5E-34 272.7 37.8 319 41-374 78-574 (830)
86 KOG0352 ATP-dependent DNA heli 100.0 1.3E-30 2.8E-35 253.7 22.9 327 33-379 6-368 (641)
87 KOG0351 ATP-dependent DNA heli 100.0 1.9E-30 4.2E-35 285.6 26.4 328 37-381 256-600 (941)
88 PRK09694 helicase Cas3; Provis 100.0 1E-29 2.2E-34 280.7 31.1 312 44-362 285-664 (878)
89 COG1061 SSL2 DNA or RNA helica 100.0 5.5E-30 1.2E-34 268.1 26.2 298 44-365 35-382 (442)
90 COG1197 Mfd Transcription-repa 100.0 3.1E-29 6.8E-34 274.3 32.2 348 2-373 537-913 (1139)
91 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-29 5.3E-34 268.1 28.3 333 40-379 105-497 (1230)
92 PRK12906 secA preprotein trans 100.0 5.4E-29 1.2E-33 268.4 26.7 320 41-374 77-554 (796)
93 KOG0353 ATP-dependent DNA heli 100.0 3.3E-28 7.1E-33 233.7 24.3 338 26-377 74-471 (695)
94 PRK13107 preprotein translocas 100.0 7.9E-27 1.7E-31 252.1 33.3 319 42-374 80-592 (908)
95 COG4098 comFA Superfamily II D 100.0 3.6E-26 7.7E-31 217.8 31.0 305 45-376 97-419 (441)
96 PRK11448 hsdR type I restricti 100.0 1E-26 2.3E-31 263.9 29.1 308 45-361 413-801 (1123)
97 KOG0951 RNA helicase BRR2, DEA 99.9 2.6E-26 5.6E-31 247.7 25.5 340 30-380 296-709 (1674)
98 PF00270 DEAD: DEAD/DEAH box h 99.9 4.7E-26 1E-30 208.6 18.9 165 47-215 1-168 (169)
99 KOG0923 mRNA splicing factor A 99.9 2.5E-25 5.3E-30 227.3 24.6 312 46-375 266-608 (902)
100 KOG0922 DEAH-box RNA helicase 99.9 1.1E-24 2.4E-29 225.0 28.8 307 49-376 55-393 (674)
101 COG1643 HrpA HrpA-like helicas 99.9 1.5E-24 3.2E-29 236.5 31.5 339 46-414 51-417 (845)
102 KOG0950 DNA polymerase theta/e 99.9 5.8E-26 1.3E-30 241.6 19.8 343 28-380 206-618 (1008)
103 PLN03142 Probable chromatin-re 99.9 4E-24 8.7E-29 238.7 31.3 319 45-375 169-601 (1033)
104 COG4581 Superfamily II RNA hel 99.9 1.4E-24 3E-29 238.1 26.7 318 37-373 112-537 (1041)
105 KOG0947 Cytoplasmic exosomal R 99.9 2E-24 4.2E-29 228.3 23.9 313 40-373 293-723 (1248)
106 KOG0925 mRNA splicing factor A 99.9 5.6E-24 1.2E-28 210.7 22.7 397 22-453 24-462 (699)
107 KOG0924 mRNA splicing factor A 99.9 4.2E-23 9.1E-28 211.3 26.7 366 43-437 354-751 (1042)
108 COG1110 Reverse gyrase [DNA re 99.9 1.1E-22 2.5E-27 217.6 29.5 279 42-344 80-416 (1187)
109 COG1203 CRISPR-associated heli 99.9 2E-23 4.3E-28 231.3 23.0 325 46-377 196-554 (733)
110 TIGR01407 dinG_rel DnaQ family 99.9 9.8E-22 2.1E-26 222.1 33.9 332 30-373 231-814 (850)
111 PRK12900 secA preprotein trans 99.9 5.3E-22 1.2E-26 215.6 28.2 128 246-375 578-713 (1025)
112 KOG0948 Nuclear exosomal RNA h 99.9 4.6E-23 1E-27 213.2 17.9 309 45-373 129-539 (1041)
113 PRK14873 primosome assembly pr 99.9 5.5E-23 1.2E-27 222.5 19.1 333 64-427 164-606 (665)
114 TIGR00631 uvrb excinuclease AB 99.9 2.7E-21 5.8E-26 210.0 27.1 132 249-381 425-561 (655)
115 PRK12326 preprotein translocas 99.9 1.1E-20 2.5E-25 200.1 30.0 319 41-374 75-548 (764)
116 KOG0920 ATP-dependent RNA heli 99.9 3.5E-20 7.6E-25 201.6 29.3 318 46-377 174-548 (924)
117 TIGR00348 hsdR type I site-spe 99.9 2.1E-20 4.5E-25 205.2 27.9 312 46-372 239-650 (667)
118 PRK05298 excinuclease ABC subu 99.9 3.1E-20 6.8E-25 203.1 28.4 145 249-394 429-587 (652)
119 KOG0926 DEAH-box RNA helicase 99.9 1.9E-20 4E-25 195.1 23.9 305 51-373 262-704 (1172)
120 PRK13103 secA preprotein trans 99.9 2.7E-19 5.9E-24 194.1 33.6 317 41-374 79-592 (913)
121 COG4096 HsdR Type I site-speci 99.9 1.3E-20 2.8E-25 199.2 22.5 296 44-360 164-525 (875)
122 COG0556 UvrB Helicase subunit 99.9 9.5E-20 2.1E-24 183.4 26.2 166 199-372 386-556 (663)
123 smart00487 DEXDc DEAD-like hel 99.9 3.8E-20 8.3E-25 172.9 20.9 186 40-229 3-190 (201)
124 PRK07246 bifunctional ATP-depe 99.9 3.2E-19 7E-24 199.2 31.8 320 38-373 239-783 (820)
125 KOG0385 Chromatin remodeling c 99.9 6.7E-20 1.5E-24 190.7 24.0 320 45-375 167-601 (971)
126 PRK12903 secA preprotein trans 99.8 9E-18 2E-22 180.5 33.9 319 41-374 75-540 (925)
127 KOG0387 Transcription-coupled 99.8 3.1E-18 6.7E-23 179.3 21.2 319 45-374 205-659 (923)
128 KOG1123 RNA polymerase II tran 99.8 7.3E-19 1.6E-23 175.1 14.9 309 44-375 301-655 (776)
129 CHL00122 secA preprotein trans 99.8 1.5E-16 3.2E-21 172.3 33.8 279 41-333 73-491 (870)
130 COG4889 Predicted helicase [Ge 99.8 6E-20 1.3E-24 192.6 6.0 328 33-370 149-585 (1518)
131 PRK12902 secA preprotein trans 99.8 5.3E-16 1.2E-20 167.7 35.8 279 41-333 82-506 (939)
132 PRK08074 bifunctional ATP-depe 99.8 2.3E-16 5.1E-21 179.3 32.3 121 253-373 738-893 (928)
133 KOG0390 DNA repair protein, SN 99.8 2.2E-16 4.7E-21 169.5 29.6 321 45-373 238-707 (776)
134 TIGR03117 cas_csf4 CRISPR-asso 99.8 5.8E-16 1.3E-20 166.0 31.9 107 265-373 469-616 (636)
135 cd00079 HELICc Helicase superf 99.8 9.1E-18 2E-22 146.5 14.9 121 249-369 11-131 (131)
136 KOG0949 Predicted helicase, DE 99.8 6.5E-17 1.4E-21 172.2 23.0 159 46-211 512-673 (1330)
137 cd00046 DEXDc DEAD-like helica 99.7 1.8E-16 3.9E-21 139.3 16.6 144 61-209 1-144 (144)
138 KOG0384 Chromodomain-helicase 99.7 1.1E-16 2.5E-21 174.3 17.8 317 44-375 369-813 (1373)
139 KOG0953 Mitochondrial RNA heli 99.7 2.6E-16 5.6E-21 159.2 18.2 278 62-389 193-489 (700)
140 PF00271 Helicase_C: Helicase 99.7 3.1E-17 6.7E-22 129.8 8.3 78 284-361 1-78 (78)
141 KOG0389 SNF2 family DNA-depend 99.7 1.3E-15 2.7E-20 159.8 22.0 321 46-375 400-890 (941)
142 KOG0392 SNF2 family DNA-depend 99.7 1.3E-15 2.7E-20 165.7 20.7 340 24-374 933-1455(1549)
143 KOG1000 Chromatin remodeling p 99.7 3.1E-15 6.8E-20 149.4 21.1 307 44-366 197-594 (689)
144 PRK11747 dinG ATP-dependent DN 99.7 7.2E-14 1.6E-18 154.4 34.2 120 251-373 519-674 (697)
145 PF04851 ResIII: Type III rest 99.7 5.9E-16 1.3E-20 143.3 11.7 153 45-210 3-183 (184)
146 KOG4150 Predicted ATP-dependen 99.7 6.9E-15 1.5E-19 148.8 19.7 343 39-387 280-656 (1034)
147 PRK12901 secA preprotein trans 99.6 1.3E-13 2.8E-18 150.9 28.3 128 245-374 607-742 (1112)
148 KOG0951 RNA helicase BRR2, DEA 99.6 2.6E-13 5.7E-18 148.3 25.6 318 45-389 1143-1507(1674)
149 COG1199 DinG Rad3-related DNA 99.6 3.3E-13 7.1E-18 149.9 26.4 118 252-372 464-616 (654)
150 TIGR00604 rad3 DNA repair heli 99.6 1.3E-12 2.9E-17 145.4 28.2 74 41-116 6-83 (705)
151 smart00490 HELICc helicase sup 99.6 1.4E-14 3.1E-19 115.2 8.8 81 281-361 2-82 (82)
152 TIGR02562 cas3_yersinia CRISPR 99.5 5.5E-13 1.2E-17 146.7 20.4 336 35-378 398-899 (1110)
153 PF06862 DUF1253: Protein of u 99.5 8.1E-12 1.8E-16 128.0 27.7 237 143-379 131-421 (442)
154 KOG0386 Chromatin remodeling c 99.5 1E-13 2.2E-18 148.9 12.0 319 45-374 394-839 (1157)
155 KOG0388 SNF2 family DNA-depend 99.4 2.1E-11 4.5E-16 126.7 18.9 123 252-374 1030-1155(1185)
156 COG0653 SecA Preprotein transl 99.4 3.6E-10 7.8E-15 122.6 27.4 319 42-374 78-546 (822)
157 PF02399 Herpes_ori_bp: Origin 99.4 7.5E-11 1.6E-15 127.0 21.9 288 63-372 52-387 (824)
158 KOG1002 Nucleotide excision re 99.3 4.1E-11 8.8E-16 120.2 18.0 108 268-375 640-751 (791)
159 KOG0391 SNF2 family DNA-depend 99.3 9.5E-11 2.1E-15 127.3 21.0 120 255-374 1265-1388(1958)
160 KOG4439 RNA polymerase II tran 99.3 4.5E-11 9.8E-16 124.5 17.7 120 248-367 727-850 (901)
161 PF07652 Flavi_DEAD: Flaviviru 99.3 8.9E-12 1.9E-16 107.3 9.4 139 59-216 3-143 (148)
162 COG0610 Type I site-specific r 99.3 3E-09 6.4E-14 121.1 32.0 299 61-371 274-651 (962)
163 PF00176 SNF2_N: SNF2 family N 99.3 2.4E-11 5.3E-16 121.6 12.0 155 49-210 1-173 (299)
164 COG0553 HepA Superfamily II DN 99.3 1.8E-10 3.9E-15 132.4 19.3 125 250-374 692-823 (866)
165 KOG2340 Uncharacterized conser 99.2 9.4E-10 2E-14 111.5 17.1 335 43-378 214-673 (698)
166 smart00488 DEXDc2 DEAD-like he 99.2 3.7E-10 8.1E-15 112.0 13.0 74 42-116 6-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.2 3.7E-10 8.1E-15 112.0 13.0 74 42-116 6-84 (289)
168 KOG0921 Dosage compensation co 99.0 1.6E-08 3.5E-13 108.2 16.3 332 55-399 388-797 (1282)
169 KOG1015 Transcription regulato 98.9 1E-07 2.2E-12 102.6 19.5 122 252-373 1128-1277(1567)
170 PF07517 SecA_DEAD: SecA DEAD- 98.7 5.3E-07 1.1E-11 87.5 14.9 132 40-181 73-210 (266)
171 PRK15483 type III restriction- 98.6 6.4E-07 1.4E-11 99.8 13.7 144 61-211 60-240 (986)
172 TIGR00596 rad1 DNA repair prot 98.5 3.7E-06 8.1E-11 93.7 17.4 68 142-210 6-73 (814)
173 PF13086 AAA_11: AAA domain; P 98.5 8.2E-07 1.8E-11 85.2 9.8 70 45-115 1-75 (236)
174 PF13604 AAA_30: AAA domain; P 98.3 2.6E-06 5.5E-11 79.8 9.8 123 45-207 1-129 (196)
175 PRK10536 hypothetical protein; 98.3 1.5E-05 3.2E-10 76.5 14.0 142 41-205 55-209 (262)
176 PF02562 PhoH: PhoH-like prote 98.3 7.8E-07 1.7E-11 82.9 5.1 139 44-208 3-155 (205)
177 TIGR00376 DNA helicase, putati 98.3 0.00016 3.4E-09 79.7 23.7 67 44-115 156-223 (637)
178 COG3587 Restriction endonuclea 98.3 7E-05 1.5E-09 81.1 19.5 45 316-360 483-527 (985)
179 PF13307 Helicase_C_2: Helicas 98.2 3.5E-06 7.7E-11 76.7 8.0 106 265-372 8-149 (167)
180 PF13872 AAA_34: P-loop contai 98.1 3.3E-05 7.2E-10 75.3 12.2 169 28-212 26-223 (303)
181 KOG0952 DNA/RNA helicase MER3/ 98.1 2.4E-06 5.1E-11 93.8 3.8 259 45-316 927-1205(1230)
182 KOG1016 Predicted DNA helicase 98.0 0.00047 1E-08 73.8 18.5 108 266-373 719-849 (1387)
183 PF09848 DUF2075: Uncharacteri 98.0 2.1E-05 4.6E-10 80.6 8.7 108 62-195 3-117 (352)
184 PF13245 AAA_19: Part of AAA d 98.0 3.4E-05 7.5E-10 60.1 7.6 60 53-113 2-62 (76)
185 KOG1802 RNA helicase nonsense 98.0 0.00031 6.6E-09 74.1 16.4 84 38-129 403-486 (935)
186 TIGR01448 recD_rel helicase, p 97.9 0.00015 3.3E-09 80.9 15.3 134 40-208 319-452 (720)
187 KOG1001 Helicase-like transcri 97.9 6.7E-05 1.5E-09 82.0 11.9 99 268-366 541-641 (674)
188 PRK10875 recD exonuclease V su 97.8 0.00021 4.5E-09 78.0 12.6 144 46-208 153-301 (615)
189 KOG1803 DNA helicase [Replicat 97.8 5.4E-05 1.2E-09 79.3 7.7 63 45-112 185-248 (649)
190 PF12340 DUF3638: Protein of u 97.8 0.00035 7.5E-09 65.9 12.3 152 24-182 4-186 (229)
191 TIGR01447 recD exodeoxyribonuc 97.8 0.00037 8.1E-09 75.8 14.2 141 47-206 147-293 (586)
192 KOG1132 Helicase of the DEAD s 97.6 0.00035 7.6E-09 76.1 10.7 134 45-181 21-260 (945)
193 PRK13889 conjugal transfer rel 97.6 0.0011 2.4E-08 75.7 15.0 128 39-208 341-470 (988)
194 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0012 2.5E-08 74.3 14.6 74 30-109 338-412 (744)
195 TIGR02760 TraI_TIGR conjugativ 97.5 0.01 2.2E-07 73.2 21.9 209 45-287 429-647 (1960)
196 PF00580 UvrD-helicase: UvrD/R 97.4 0.00034 7.5E-09 70.2 7.8 105 46-159 1-105 (315)
197 PRK12723 flagellar biosynthesi 97.4 0.0054 1.2E-07 63.2 16.5 159 61-262 175-338 (388)
198 PRK11773 uvrD DNA-dependent he 97.4 0.015 3.1E-07 65.7 21.0 71 44-117 8-78 (721)
199 PRK13826 Dtr system oriT relax 97.4 0.0027 5.8E-08 73.1 15.0 138 29-208 366-505 (1102)
200 KOG1805 DNA replication helica 97.3 0.0012 2.7E-08 72.6 10.8 137 28-182 656-810 (1100)
201 PRK14974 cell division protein 97.3 0.0019 4E-08 65.3 11.4 129 62-220 142-275 (336)
202 PRK06526 transposase; Provisio 97.3 0.00058 1.3E-08 66.4 6.9 112 55-213 93-205 (254)
203 COG1875 NYN ribonuclease and A 97.3 0.00077 1.7E-08 66.9 7.5 144 41-206 224-385 (436)
204 PF05970 PIF1: PIF1-like helic 97.3 0.0012 2.6E-08 68.0 9.4 60 45-109 1-66 (364)
205 PF13401 AAA_22: AAA domain; P 97.3 0.0011 2.3E-08 57.4 7.6 19 60-78 4-22 (131)
206 smart00492 HELICc3 helicase su 97.2 0.0033 7.1E-08 55.4 10.3 93 279-371 4-136 (141)
207 PRK04296 thymidine kinase; Pro 97.2 0.00053 1.1E-08 63.8 5.3 110 61-209 3-115 (190)
208 PRK14722 flhF flagellar biosyn 97.2 0.0027 5.9E-08 64.9 10.6 166 24-220 82-269 (374)
209 cd00009 AAA The AAA+ (ATPases 97.1 0.004 8.7E-08 54.2 10.3 19 60-78 19-37 (151)
210 PRK08181 transposase; Validate 97.1 0.01 2.2E-07 58.2 13.9 122 46-214 88-214 (269)
211 smart00491 HELICc2 helicase su 97.1 0.0035 7.7E-08 55.2 9.3 93 279-371 4-137 (142)
212 smart00382 AAA ATPases associa 97.0 0.0023 4.9E-08 55.3 7.6 43 60-107 2-44 (148)
213 COG3421 Uncharacterized protei 96.9 0.0046 1E-07 65.0 9.8 142 66-212 3-168 (812)
214 PRK05703 flhF flagellar biosyn 96.9 0.017 3.7E-07 60.5 14.3 129 60-220 221-354 (424)
215 PRK07952 DNA replication prote 96.9 0.012 2.6E-07 56.9 11.8 109 61-214 100-210 (244)
216 PRK12727 flagellar biosynthesi 96.9 0.041 8.9E-07 58.5 16.3 164 24-220 300-481 (559)
217 PRK11889 flhF flagellar biosyn 96.8 0.012 2.5E-07 60.2 11.2 157 61-262 242-403 (436)
218 COG1419 FlhF Flagellar GTP-bin 96.8 0.034 7.4E-07 56.7 14.2 131 60-220 203-335 (407)
219 PF00448 SRP54: SRP54-type pro 96.7 0.0089 1.9E-07 55.8 9.3 123 63-214 4-130 (196)
220 PF14617 CMS1: U3-containing 9 96.6 0.0074 1.6E-07 58.1 7.6 86 92-179 125-212 (252)
221 PRK13709 conjugal transfer nic 96.5 0.026 5.5E-07 68.3 12.8 64 45-109 967-1032(1747)
222 cd01120 RecA-like_NTPases RecA 96.4 0.028 6E-07 50.1 10.3 40 63-107 2-41 (165)
223 PRK14712 conjugal transfer nic 96.4 0.029 6.3E-07 67.0 12.5 62 45-109 835-900 (1623)
224 PRK05642 DNA replication initi 96.3 0.024 5.2E-07 54.6 9.8 44 168-211 97-141 (234)
225 PRK08727 hypothetical protein; 96.3 0.016 3.4E-07 55.8 8.4 47 167-213 92-140 (233)
226 PF13871 Helicase_C_4: Helicas 96.3 0.01 2.2E-07 57.9 7.0 66 307-372 52-126 (278)
227 cd01124 KaiC KaiC is a circadi 96.3 0.024 5.2E-07 52.2 9.2 49 63-117 2-50 (187)
228 PRK06921 hypothetical protein; 96.3 0.078 1.7E-06 52.1 13.1 44 60-108 117-160 (266)
229 KOG1131 RNA polymerase II tran 96.3 0.03 6.6E-07 58.0 10.2 62 41-103 12-77 (755)
230 KOG0989 Replication factor C, 96.2 0.011 2.3E-07 57.7 6.6 45 164-209 125-169 (346)
231 PRK14723 flhF flagellar biosyn 96.2 0.065 1.4E-06 59.6 13.5 127 62-220 187-317 (767)
232 PRK00149 dnaA chromosomal repl 96.2 0.033 7.1E-07 59.2 10.9 109 61-214 149-259 (450)
233 PRK11054 helD DNA helicase IV; 96.2 0.013 2.8E-07 65.1 8.0 70 44-116 195-264 (684)
234 PRK00771 signal recognition pa 96.2 0.039 8.6E-07 57.9 11.0 169 62-277 97-269 (437)
235 PHA02533 17 large terminase pr 96.2 0.044 9.5E-07 59.1 11.5 147 45-208 59-209 (534)
236 PRK06731 flhF flagellar biosyn 96.1 0.068 1.5E-06 52.4 11.6 157 61-262 76-237 (270)
237 PRK08116 hypothetical protein; 96.1 0.069 1.5E-06 52.5 11.6 110 61-215 115-227 (268)
238 KOG0298 DEAD box-containing he 96.1 0.017 3.6E-07 65.8 7.9 151 60-215 374-556 (1394)
239 PRK10919 ATP-dependent DNA hel 96.1 0.014 2.9E-07 65.2 7.4 69 45-116 2-70 (672)
240 TIGR00362 DnaA chromosomal rep 96.1 0.044 9.5E-07 57.4 10.8 108 62-214 138-247 (405)
241 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.023 5E-07 54.2 7.9 42 169-210 91-133 (226)
242 PRK12377 putative replication 96.0 0.053 1.2E-06 52.5 10.2 106 61-212 102-209 (248)
243 COG3973 Superfamily I DNA and 96.0 0.044 9.6E-07 58.1 10.1 91 26-117 185-284 (747)
244 PRK05580 primosome assembly pr 96.0 0.046 9.9E-07 61.1 11.0 93 249-342 173-266 (679)
245 COG1484 DnaC DNA replication p 96.0 0.026 5.6E-07 55.0 8.0 71 38-114 76-153 (254)
246 TIGR00595 priA primosomal prot 96.0 0.041 8.9E-07 59.2 10.2 93 249-342 8-101 (505)
247 PRK09183 transposase/IS protei 96.0 0.075 1.6E-06 52.0 11.2 46 57-108 99-144 (259)
248 TIGR01075 uvrD DNA helicase II 95.9 0.032 7E-07 62.9 9.8 72 44-118 3-74 (715)
249 PRK05707 DNA polymerase III su 95.9 0.05 1.1E-06 55.1 10.2 42 45-86 3-48 (328)
250 TIGR01425 SRP54_euk signal rec 95.9 0.066 1.4E-06 55.8 11.1 130 63-220 103-235 (429)
251 PRK10917 ATP-dependent DNA hel 95.8 0.039 8.4E-07 61.8 9.7 81 262-342 306-391 (681)
252 PRK08084 DNA replication initi 95.8 0.036 7.9E-07 53.4 8.3 43 169-211 98-142 (235)
253 PRK14087 dnaA chromosomal repl 95.8 0.084 1.8E-06 55.9 11.6 110 61-213 142-253 (450)
254 PRK14873 primosome assembly pr 95.8 0.065 1.4E-06 59.3 10.9 95 248-343 170-266 (665)
255 TIGR01547 phage_term_2 phage t 95.7 0.032 6.9E-07 58.3 8.2 137 62-212 3-143 (396)
256 TIGR00064 ftsY signal recognit 95.7 0.11 2.4E-06 51.1 11.5 130 62-220 74-213 (272)
257 PF13177 DNA_pol3_delta2: DNA 95.7 0.062 1.3E-06 48.5 8.9 47 167-214 101-147 (162)
258 PRK06893 DNA replication initi 95.7 0.047 1E-06 52.4 8.5 46 167-212 90-137 (229)
259 PRK08903 DnaA regulatory inact 95.6 0.037 8.1E-07 52.9 7.4 43 168-211 90-133 (227)
260 TIGR01074 rep ATP-dependent DN 95.6 0.031 6.8E-07 62.5 7.8 69 46-117 2-70 (664)
261 PRK06835 DNA replication prote 95.6 0.11 2.5E-06 52.4 11.0 110 60-214 183-294 (329)
262 CHL00181 cbbX CbbX; Provisiona 95.6 0.2 4.4E-06 49.7 12.6 21 60-80 59-79 (287)
263 PRK14088 dnaA chromosomal repl 95.5 0.1 2.3E-06 55.1 11.0 49 168-216 194-244 (440)
264 cd01122 GP4d_helicase GP4d_hel 95.5 0.043 9.3E-07 54.0 7.7 143 33-182 3-154 (271)
265 PHA02544 44 clamp loader, smal 95.5 0.077 1.7E-06 53.5 9.7 39 168-206 100-138 (316)
266 PF05127 Helicase_RecD: Helica 95.5 0.023 4.9E-07 51.8 5.2 124 64-210 1-124 (177)
267 COG4962 CpaF Flp pilus assembl 95.5 0.031 6.8E-07 55.6 6.4 78 25-108 137-215 (355)
268 PRK08769 DNA polymerase III su 95.5 0.12 2.6E-06 52.0 10.7 144 43-209 2-153 (319)
269 PLN03025 replication factor C 95.5 0.18 3.8E-06 51.0 12.1 39 168-208 99-137 (319)
270 PF00308 Bac_DnaA: Bacterial d 95.4 0.065 1.4E-06 51.0 8.3 107 62-213 36-144 (219)
271 COG1198 PriA Primosomal protei 95.4 0.047 1E-06 60.4 8.2 94 245-339 224-318 (730)
272 PRK11331 5-methylcytosine-spec 95.3 0.11 2.4E-06 54.2 10.2 33 46-78 180-212 (459)
273 TIGR03015 pepcterm_ATPase puta 95.3 0.29 6.4E-06 47.9 12.8 34 45-78 23-61 (269)
274 PF05876 Terminase_GpA: Phage 95.3 0.04 8.7E-07 59.9 7.1 124 45-181 16-147 (557)
275 PRK12724 flagellar biosynthesi 95.3 0.24 5.3E-06 51.3 12.2 124 63-220 226-356 (432)
276 cd00561 CobA_CobO_BtuR ATP:cor 95.2 0.39 8.5E-06 43.0 12.1 131 63-219 5-148 (159)
277 TIGR02760 TraI_TIGR conjugativ 95.2 0.1 2.2E-06 64.8 11.1 61 45-109 1019-1084(1960)
278 TIGR00643 recG ATP-dependent D 95.2 0.066 1.4E-06 59.4 8.8 80 263-342 281-365 (630)
279 PRK10867 signal recognition pa 95.2 0.16 3.5E-06 53.2 11.1 130 63-220 103-236 (433)
280 PRK12422 chromosomal replicati 95.2 0.078 1.7E-06 56.0 8.7 108 61-215 142-251 (445)
281 TIGR02881 spore_V_K stage V sp 95.2 0.22 4.7E-06 48.8 11.3 18 61-78 43-60 (261)
282 TIGR00580 mfd transcription-re 95.1 0.089 1.9E-06 60.5 9.6 90 251-340 485-579 (926)
283 PF00004 AAA: ATPase family as 95.1 0.27 5.9E-06 42.0 10.7 16 63-78 1-16 (132)
284 COG2256 MGS1 ATPase related to 95.1 0.07 1.5E-06 54.1 7.7 18 61-78 49-66 (436)
285 PRK14086 dnaA chromosomal repl 95.1 0.15 3.2E-06 55.5 10.6 108 62-214 316-425 (617)
286 PRK08533 flagellar accessory p 95.1 0.14 3E-06 49.2 9.5 54 58-117 22-75 (230)
287 PF03354 Terminase_1: Phage Te 95.1 0.07 1.5E-06 57.1 8.3 149 48-205 1-159 (477)
288 COG1200 RecG RecG-like helicas 95.1 0.093 2E-06 56.7 9.0 96 245-341 291-391 (677)
289 TIGR01073 pcrA ATP-dependent D 95.1 0.1 2.2E-06 59.1 9.9 71 44-117 3-73 (726)
290 TIGR02785 addA_Gpos recombinat 95.1 0.1 2.2E-06 62.4 10.2 124 45-179 1-126 (1232)
291 PRK14721 flhF flagellar biosyn 95.1 0.13 2.7E-06 53.7 9.7 160 60-262 191-352 (420)
292 cd03115 SRP The signal recogni 95.0 0.31 6.8E-06 44.3 11.1 54 167-220 81-135 (173)
293 PRK12402 replication factor C 94.9 0.29 6.2E-06 49.7 11.8 39 167-206 124-162 (337)
294 PF05729 NACHT: NACHT domain 94.9 0.23 4.9E-06 44.3 9.9 45 62-107 2-47 (166)
295 TIGR03499 FlhF flagellar biosy 94.9 0.13 2.7E-06 51.1 8.8 21 61-81 195-215 (282)
296 PRK07003 DNA polymerase III su 94.8 0.26 5.6E-06 54.7 11.6 39 167-206 118-156 (830)
297 PRK06995 flhF flagellar biosyn 94.8 0.13 2.9E-06 54.4 9.1 21 61-81 257-277 (484)
298 COG1444 Predicted P-loop ATPas 94.7 0.22 4.7E-06 55.1 10.8 148 36-209 205-356 (758)
299 KOG0738 AAA+-type ATPase [Post 94.7 0.16 3.5E-06 51.3 8.9 59 19-77 179-262 (491)
300 PRK13342 recombination factor 94.7 0.13 2.8E-06 54.0 8.9 17 62-78 38-54 (413)
301 TIGR00959 ffh signal recogniti 94.7 0.5 1.1E-05 49.5 13.0 130 63-220 102-235 (428)
302 PRK12726 flagellar biosynthesi 94.7 0.13 2.8E-06 52.6 8.3 128 60-219 206-338 (407)
303 PF13173 AAA_14: AAA domain 94.7 0.27 5.9E-06 42.3 9.4 36 168-206 61-96 (128)
304 PRK07764 DNA polymerase III su 94.6 0.25 5.3E-06 56.1 11.3 39 167-206 119-157 (824)
305 PRK08939 primosomal protein Dn 94.5 0.18 3.9E-06 50.5 8.8 110 60-216 156-268 (306)
306 PRK13894 conjugal transfer ATP 94.5 0.12 2.6E-06 52.0 7.6 67 35-106 124-191 (319)
307 PRK14960 DNA polymerase III su 94.5 0.22 4.8E-06 54.4 9.9 40 167-208 117-156 (702)
308 PRK14961 DNA polymerase III su 94.4 0.3 6.6E-06 50.3 10.7 38 167-205 118-155 (363)
309 PRK06964 DNA polymerase III su 94.4 0.29 6.4E-06 49.7 10.2 41 46-86 2-47 (342)
310 PRK08691 DNA polymerase III su 94.4 0.32 6.9E-06 53.6 11.0 40 166-206 117-156 (709)
311 PRK12323 DNA polymerase III su 94.3 0.26 5.7E-06 53.7 10.1 41 166-207 122-162 (700)
312 PRK07994 DNA polymerase III su 94.3 0.37 8E-06 53.0 11.4 38 167-205 118-155 (647)
313 COG1474 CDC6 Cdc6-related prot 94.3 0.9 2E-05 46.7 13.6 27 61-88 43-69 (366)
314 PRK14964 DNA polymerase III su 94.3 0.43 9.4E-06 50.8 11.6 42 166-209 114-155 (491)
315 PRK04195 replication factor C 94.3 0.37 8.1E-06 51.7 11.4 19 60-78 39-57 (482)
316 PRK10416 signal recognition pa 94.3 0.64 1.4E-05 46.8 12.3 130 62-220 116-255 (318)
317 TIGR02880 cbbX_cfxQ probable R 94.2 0.62 1.3E-05 46.2 12.0 19 60-78 58-76 (284)
318 PRK14958 DNA polymerase III su 94.2 0.3 6.4E-06 52.6 10.4 39 167-206 118-156 (509)
319 COG2909 MalT ATP-dependent tra 94.2 0.14 3.1E-06 56.6 7.9 46 166-211 127-172 (894)
320 cd01121 Sms Sms (bacterial rad 94.2 0.2 4.3E-06 51.6 8.7 59 53-117 70-133 (372)
321 PRK13833 conjugal transfer pro 94.2 0.18 3.9E-06 50.8 8.0 65 37-106 122-187 (323)
322 PRK14956 DNA polymerase III su 94.1 0.38 8.3E-06 50.8 10.6 20 63-82 43-62 (484)
323 PRK09111 DNA polymerase III su 94.1 0.42 9.1E-06 52.4 11.3 40 166-206 130-169 (598)
324 PRK11823 DNA repair protein Ra 94.1 0.18 4E-06 53.3 8.3 59 53-117 68-131 (446)
325 PRK08699 DNA polymerase III su 94.1 0.46 1E-05 48.1 10.8 40 46-85 2-46 (325)
326 PRK05973 replicative DNA helic 94.0 0.13 2.8E-06 49.3 6.4 84 27-117 22-115 (237)
327 PRK05986 cob(I)alamin adenolsy 94.0 0.7 1.5E-05 42.7 10.8 140 59-219 21-168 (191)
328 PRK10689 transcription-repair 94.0 0.23 4.9E-06 58.5 9.5 78 263-340 646-728 (1147)
329 TIGR02928 orc1/cdc6 family rep 93.9 0.7 1.5E-05 47.5 12.2 18 61-78 41-58 (365)
330 COG1435 Tdk Thymidine kinase [ 93.9 0.22 4.8E-06 45.7 7.3 103 61-194 5-107 (201)
331 PF02456 Adeno_IVa2: Adenoviru 93.9 0.07 1.5E-06 52.2 4.3 38 63-105 90-129 (369)
332 KOG0991 Replication factor C, 93.9 0.15 3.3E-06 47.9 6.3 25 61-85 49-73 (333)
333 cd00984 DnaB_C DnaB helicase C 93.9 0.49 1.1E-05 45.5 10.3 39 59-101 12-50 (242)
334 PF05496 RuvB_N: Holliday junc 93.8 0.23 4.9E-06 46.9 7.4 17 62-78 52-68 (233)
335 COG2805 PilT Tfp pilus assembl 93.8 0.29 6.3E-06 47.9 8.3 25 63-88 128-152 (353)
336 KOG1133 Helicase of the DEAD s 93.8 5 0.00011 43.7 17.9 124 248-373 610-780 (821)
337 PRK00411 cdc6 cell division co 93.7 0.52 1.1E-05 49.1 10.9 18 61-78 56-73 (394)
338 PTZ00293 thymidine kinase; Pro 93.7 0.2 4.4E-06 47.0 6.9 39 60-103 4-42 (211)
339 COG1197 Mfd Transcription-repa 93.7 0.33 7.1E-06 55.8 9.7 90 250-339 627-721 (1139)
340 PRK13341 recombination factor 93.7 0.32 6.9E-06 54.5 9.6 40 168-212 109-148 (725)
341 PHA03333 putative ATPase subun 93.7 1.2 2.5E-05 48.9 13.3 149 46-209 170-332 (752)
342 PRK09112 DNA polymerase III su 93.6 0.48 1E-05 48.5 10.1 42 166-208 139-180 (351)
343 TIGR00708 cobA cob(I)alamin ad 93.5 0.33 7.2E-06 44.1 7.8 54 166-219 95-150 (173)
344 COG0552 FtsY Signal recognitio 93.5 0.66 1.4E-05 46.2 10.4 129 63-220 142-280 (340)
345 PRK06871 DNA polymerase III su 93.5 0.52 1.1E-05 47.5 10.0 42 166-208 105-146 (325)
346 PF01443 Viral_helicase1: Vira 93.5 0.1 2.2E-06 49.9 4.8 23 320-342 184-206 (234)
347 PRK06904 replicative DNA helic 93.5 0.88 1.9E-05 48.5 12.1 117 59-183 220-349 (472)
348 TIGR03600 phage_DnaB phage rep 93.4 1.1 2.3E-05 47.2 12.8 57 42-102 176-232 (421)
349 PRK14950 DNA polymerase III su 93.3 0.89 1.9E-05 50.0 12.3 41 166-208 118-158 (585)
350 COG0593 DnaA ATPase involved i 93.3 0.36 7.9E-06 49.8 8.6 47 168-214 175-223 (408)
351 PRK14955 DNA polymerase III su 93.3 0.85 1.8E-05 47.6 11.6 23 62-84 40-62 (397)
352 PTZ00112 origin recognition co 93.3 1 2.2E-05 50.8 12.4 41 167-208 868-909 (1164)
353 PRK07940 DNA polymerase III su 93.3 0.75 1.6E-05 47.8 11.0 45 166-212 115-159 (394)
354 KOG1133 Helicase of the DEAD s 93.3 0.12 2.7E-06 55.5 5.2 44 45-88 15-62 (821)
355 COG0470 HolB ATPase involved i 93.2 0.47 1E-05 47.7 9.4 39 167-206 108-146 (325)
356 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.88 1.9E-05 43.4 10.7 51 60-116 20-70 (229)
357 PRK14957 DNA polymerase III su 93.1 0.51 1.1E-05 51.0 9.8 40 166-206 117-156 (546)
358 COG2804 PulE Type II secretory 93.0 0.17 3.6E-06 53.2 5.7 41 46-87 242-284 (500)
359 PRK06645 DNA polymerase III su 93.0 1.3 2.7E-05 47.7 12.5 22 62-83 45-66 (507)
360 COG4098 comFA Superfamily II D 93.0 0.49 1.1E-05 47.0 8.5 102 81-194 293-396 (441)
361 TIGR02782 TrbB_P P-type conjug 93.0 0.37 8E-06 48.2 8.0 67 35-106 108-175 (299)
362 KOG2028 ATPase related to the 93.0 0.39 8.4E-06 48.2 7.8 96 61-209 163-258 (554)
363 PRK07471 DNA polymerase III su 93.0 0.63 1.4E-05 47.9 9.8 43 166-209 139-181 (365)
364 PRK14969 DNA polymerase III su 93.0 0.62 1.3E-05 50.5 10.2 40 166-206 117-156 (527)
365 PF06745 KaiC: KaiC; InterPro 92.8 0.18 3.9E-06 48.1 5.3 131 60-209 19-160 (226)
366 KOG1513 Nuclear helicase MOP-3 92.7 0.13 2.8E-06 56.1 4.4 168 46-221 265-469 (1300)
367 COG3972 Superfamily I DNA and 92.7 0.51 1.1E-05 49.1 8.4 140 33-179 151-306 (660)
368 PRK06090 DNA polymerase III su 92.7 0.74 1.6E-05 46.3 9.6 136 45-209 3-148 (319)
369 PRK00440 rfc replication facto 92.7 1.8 4E-05 43.3 12.7 38 168-206 102-139 (319)
370 PRK11034 clpA ATP-dependent Cl 92.6 0.45 9.8E-06 53.6 8.8 45 169-213 279-327 (758)
371 PRK07993 DNA polymerase III su 92.5 0.68 1.5E-05 47.0 9.3 136 46-208 3-147 (334)
372 KOG0742 AAA+-type ATPase [Post 92.5 0.53 1.1E-05 47.9 8.1 53 19-76 348-400 (630)
373 PRK14952 DNA polymerase III su 92.5 0.86 1.9E-05 49.8 10.5 40 166-206 116-155 (584)
374 PRK14965 DNA polymerase III su 92.5 2.1 4.5E-05 47.0 13.6 40 166-206 117-156 (576)
375 PF03796 DnaB_C: DnaB-like hel 92.4 0.67 1.5E-05 45.2 8.9 138 60-208 19-179 (259)
376 KOG0739 AAA+-type ATPase [Post 92.4 1.9 4.1E-05 42.3 11.4 127 55-230 156-299 (439)
377 PHA00729 NTP-binding motif con 92.3 1.4 3E-05 41.9 10.3 76 144-220 59-139 (226)
378 PRK14949 DNA polymerase III su 92.3 0.59 1.3E-05 52.9 9.0 38 167-205 118-155 (944)
379 PRK14963 DNA polymerase III su 92.3 0.59 1.3E-05 50.2 8.9 18 63-80 39-56 (504)
380 PRK14951 DNA polymerase III su 92.2 0.57 1.2E-05 51.4 8.8 41 167-209 123-163 (618)
381 COG4626 Phage terminase-like p 92.0 1.3 2.7E-05 47.2 10.6 146 45-207 61-223 (546)
382 PRK04841 transcriptional regul 92.0 1.5 3.2E-05 51.0 12.6 45 167-211 120-164 (903)
383 TIGR02639 ClpA ATP-dependent C 91.9 1.6 3.5E-05 49.4 12.3 18 61-78 204-221 (731)
384 TIGR00678 holB DNA polymerase 91.9 1.1 2.4E-05 41.3 9.2 41 166-208 94-134 (188)
385 TIGR00665 DnaB replicative DNA 91.8 1.3 2.9E-05 46.7 11.0 112 60-181 195-318 (434)
386 PF14516 AAA_35: AAA-like doma 91.8 2 4.4E-05 43.6 11.7 129 48-195 18-155 (331)
387 PTZ00454 26S protease regulato 91.7 0.64 1.4E-05 48.4 8.1 57 19-78 138-197 (398)
388 PRK05563 DNA polymerase III su 91.7 1.6 3.5E-05 47.7 11.5 22 62-83 40-61 (559)
389 PF01695 IstB_IS21: IstB-like 91.7 0.41 9E-06 43.9 6.0 46 57-108 44-89 (178)
390 PRK14954 DNA polymerase III su 91.7 1.8 3.8E-05 47.7 11.8 40 166-206 125-164 (620)
391 PRK14962 DNA polymerase III su 91.6 0.56 1.2E-05 50.0 7.7 18 63-80 39-56 (472)
392 PRK08840 replicative DNA helic 91.6 2 4.4E-05 45.7 11.9 132 42-181 199-342 (464)
393 PRK14948 DNA polymerase III su 91.5 1.1 2.3E-05 49.5 10.0 24 61-84 39-62 (620)
394 PRK06067 flagellar accessory p 91.5 2 4.2E-05 41.2 10.8 52 60-117 25-76 (234)
395 PF03969 AFG1_ATPase: AFG1-lik 91.5 3.3 7.1E-05 42.6 12.9 46 167-213 126-172 (362)
396 TIGR02525 plasmid_TraJ plasmid 91.4 0.5 1.1E-05 48.6 6.8 43 60-105 149-191 (372)
397 cd01130 VirB11-like_ATPase Typ 91.3 0.64 1.4E-05 42.9 7.0 38 38-77 4-42 (186)
398 PRK08506 replicative DNA helic 91.3 0.95 2.1E-05 48.4 9.1 112 60-181 192-315 (472)
399 PRK08451 DNA polymerase III su 91.2 1.3 2.8E-05 47.8 9.9 40 166-206 115-154 (535)
400 KOG0701 dsRNA-specific nucleas 91.2 0.12 2.6E-06 61.4 2.4 94 268-361 294-399 (1606)
401 PRK13764 ATPase; Provisional 91.2 0.33 7.2E-06 52.9 5.6 42 59-105 256-297 (602)
402 PRK05896 DNA polymerase III su 91.2 1.3 2.8E-05 48.3 10.0 43 167-211 118-160 (605)
403 COG0541 Ffh Signal recognition 91.2 1.6 3.4E-05 45.2 10.0 130 63-220 103-235 (451)
404 PF06733 DEAD_2: DEAD_2; Inte 91.2 0.13 2.8E-06 47.0 2.2 45 138-182 114-159 (174)
405 COG1618 Predicted nucleotide k 91.2 0.16 3.5E-06 45.0 2.6 116 62-195 7-129 (179)
406 PRK05748 replicative DNA helic 91.0 1.9 4.2E-05 45.7 11.1 112 60-181 203-327 (448)
407 TIGR03878 thermo_KaiC_2 KaiC d 91.0 1.2 2.5E-05 43.6 8.8 38 60-102 36-73 (259)
408 COG3267 ExeA Type II secretory 91.0 0.99 2.2E-05 43.3 7.8 59 23-86 14-76 (269)
409 TIGR01243 CDC48 AAA family ATP 90.9 1.6 3.5E-05 49.5 11.0 54 21-77 173-229 (733)
410 COG1702 PhoH Phosphate starvat 90.9 1 2.2E-05 45.0 8.1 57 42-101 125-181 (348)
411 PRK08006 replicative DNA helic 90.8 2.7 5.8E-05 44.9 11.8 114 60-181 224-349 (471)
412 cd01129 PulE-GspE PulE/GspE Th 90.7 0.51 1.1E-05 46.2 6.0 61 37-105 58-120 (264)
413 TIGR02524 dot_icm_DotB Dot/Icm 90.6 0.69 1.5E-05 47.4 6.9 44 59-104 133-176 (358)
414 PRK06305 DNA polymerase III su 90.5 2 4.3E-05 45.6 10.6 38 166-204 119-156 (451)
415 KOG2543 Origin recognition com 90.5 1.4 3.1E-05 44.6 8.7 155 46-230 10-178 (438)
416 PRK13851 type IV secretion sys 90.5 0.33 7.1E-06 49.4 4.5 44 57-106 159-202 (344)
417 CHL00176 ftsH cell division pr 90.4 0.77 1.7E-05 50.8 7.6 18 61-78 217-234 (638)
418 PRK13695 putative NTPase; Prov 90.4 1.4 3E-05 40.1 8.3 17 62-78 2-18 (174)
419 TIGR03877 thermo_KaiC_1 KaiC d 90.4 0.47 1E-05 45.7 5.4 52 60-117 21-72 (237)
420 TIGR00416 sms DNA repair prote 90.4 1 2.2E-05 47.8 8.3 59 53-117 82-145 (454)
421 PRK07004 replicative DNA helic 90.3 1.5 3.2E-05 46.7 9.5 114 60-182 213-338 (460)
422 COG0513 SrmB Superfamily II DN 90.3 1.2 2.7E-05 48.0 9.0 67 269-339 102-179 (513)
423 TIGR02858 spore_III_AA stage I 90.3 2.8 6.1E-05 41.2 10.7 25 53-77 101-128 (270)
424 TIGR03689 pup_AAA proteasome A 90.2 1.1 2.3E-05 48.1 8.2 18 60-77 216-233 (512)
425 TIGR02397 dnaX_nterm DNA polym 90.1 2.3 5E-05 43.4 10.6 17 62-78 38-54 (355)
426 PRK07399 DNA polymerase III su 90.1 3 6.5E-05 42.0 11.0 41 166-208 122-162 (314)
427 PF05621 TniB: Bacterial TniB 90.1 1.1 2.4E-05 44.3 7.5 41 168-208 145-188 (302)
428 PF02534 T4SS-DNA_transf: Type 90.0 0.33 7.1E-06 51.9 4.3 50 61-117 45-94 (469)
429 COG1110 Reverse gyrase [DNA re 90.0 0.84 1.8E-05 51.7 7.3 61 265-325 124-190 (1187)
430 PRK09087 hypothetical protein; 89.9 1.2 2.6E-05 42.5 7.7 41 170-212 89-130 (226)
431 TIGR02533 type_II_gspE general 89.9 0.75 1.6E-05 49.2 6.8 45 37-85 220-266 (486)
432 cd01126 TraG_VirD4 The TraG/Tr 89.9 0.23 4.9E-06 51.7 2.9 49 62-117 1-49 (384)
433 PHA00012 I assembly protein 89.9 7.2 0.00016 39.1 13.0 59 166-225 79-143 (361)
434 PRK14959 DNA polymerase III su 89.8 1.1 2.4E-05 49.0 8.1 23 62-84 40-62 (624)
435 PF03237 Terminase_6: Terminas 89.8 2.9 6.3E-05 42.6 11.1 144 64-223 1-153 (384)
436 TIGR00631 uvrb excinuclease AB 89.8 5.8 0.00013 44.2 13.8 112 92-214 441-558 (655)
437 PRK14971 DNA polymerase III su 89.6 3.1 6.8E-05 45.9 11.6 41 166-208 119-159 (614)
438 KOG0331 ATP-dependent RNA heli 89.6 1.6 3.5E-05 46.4 8.9 108 266-380 165-290 (519)
439 PHA03368 DNA packaging termina 89.6 1.2 2.7E-05 48.5 8.1 134 61-211 255-392 (738)
440 PRK03992 proteasome-activating 89.6 0.93 2E-05 47.2 7.1 18 61-78 166-183 (389)
441 TIGR03346 chaperone_ClpB ATP-d 89.6 4.6 9.9E-05 46.7 13.3 46 168-213 266-314 (852)
442 PF02572 CobA_CobO_BtuR: ATP:c 89.5 2.2 4.7E-05 38.8 8.5 142 63-219 6-149 (172)
443 PF04364 DNA_pol3_chi: DNA pol 89.4 1.4 3E-05 38.5 7.1 114 240-375 3-116 (137)
444 PRK10436 hypothetical protein; 89.4 0.69 1.5E-05 49.1 6.0 39 47-86 203-243 (462)
445 PRK13897 type IV secretion sys 89.4 0.28 6.2E-06 53.6 3.2 50 61-117 159-208 (606)
446 PF00437 T2SE: Type II/IV secr 89.3 0.31 6.6E-06 48.0 3.2 52 49-105 115-167 (270)
447 TIGR02538 type_IV_pilB type IV 89.3 0.99 2.2E-05 49.4 7.4 44 38-85 295-340 (564)
448 TIGR01243 CDC48 AAA family ATP 89.3 1.1 2.3E-05 50.9 7.9 18 61-78 488-505 (733)
449 PRK07133 DNA polymerase III su 89.3 2.4 5.1E-05 47.3 10.1 41 166-208 116-156 (725)
450 cd01394 radB RadB. The archaea 89.2 1.1 2.5E-05 42.3 6.9 43 53-100 7-54 (218)
451 PRK05636 replicative DNA helic 89.2 1.8 3.9E-05 46.6 9.1 37 61-101 266-302 (505)
452 PF12846 AAA_10: AAA-like doma 89.2 0.58 1.3E-05 46.3 5.1 43 60-107 1-43 (304)
453 KOG0732 AAA+-type ATPase conta 89.1 0.77 1.7E-05 52.6 6.3 144 21-209 260-414 (1080)
454 PF01637 Arch_ATPase: Archaeal 89.1 0.33 7.2E-06 46.0 3.1 40 170-209 120-165 (234)
455 KOG0737 AAA+-type ATPase [Post 89.0 0.64 1.4E-05 46.8 5.0 55 24-78 90-145 (386)
456 KOG0741 AAA+-type ATPase [Post 88.9 5.8 0.00013 42.1 11.9 69 27-102 493-573 (744)
457 PRK08760 replicative DNA helic 88.9 2.7 5.8E-05 45.0 10.1 112 60-181 229-352 (476)
458 PRK13900 type IV secretion sys 88.9 1.4 3E-05 44.8 7.5 45 57-107 157-201 (332)
459 PRK08058 DNA polymerase III su 88.9 3.2 7E-05 42.1 10.3 41 166-207 108-148 (329)
460 PRK05564 DNA polymerase III su 88.8 3.4 7.4E-05 41.5 10.4 40 166-206 91-130 (313)
461 PRK06321 replicative DNA helic 88.8 4.6 9.9E-05 43.1 11.7 111 61-181 227-349 (472)
462 PRK05595 replicative DNA helic 88.7 2.7 5.9E-05 44.6 10.0 39 60-102 201-239 (444)
463 cd03221 ABCF_EF-3 ABCF_EF-3 E 88.7 3 6.5E-05 36.6 8.8 40 166-208 86-125 (144)
464 COG1219 ClpX ATP-dependent pro 88.7 0.34 7.3E-06 47.8 2.8 19 60-78 97-115 (408)
465 PRK00080 ruvB Holliday junctio 88.5 0.85 1.9E-05 46.2 5.9 18 61-78 52-69 (328)
466 cd03276 ABC_SMC6_euk Eukaryoti 88.5 5.3 0.00011 37.2 10.8 44 166-209 129-175 (198)
467 TIGR01241 FtsH_fam ATP-depende 88.1 1 2.2E-05 48.6 6.4 55 21-78 50-106 (495)
468 TIGR02655 circ_KaiC circadian 88.1 1.2 2.7E-05 47.7 7.0 59 53-117 251-314 (484)
469 PRK09165 replicative DNA helic 88.0 3.6 7.9E-05 44.2 10.5 116 61-181 218-354 (497)
470 PRK14701 reverse gyrase; Provi 87.9 2.7 5.9E-05 51.4 10.3 61 265-325 121-187 (1638)
471 COG2109 BtuR ATP:corrinoid ade 87.9 2.9 6.3E-05 38.2 8.0 54 166-219 120-175 (198)
472 COG1132 MdlB ABC-type multidru 87.8 1.4 3E-05 48.4 7.4 40 166-205 481-520 (567)
473 KOG0744 AAA+-type ATPase [Post 87.8 4.2 9.1E-05 40.5 9.6 110 61-182 178-323 (423)
474 cd01131 PilT Pilus retraction 87.7 0.81 1.8E-05 42.7 4.7 39 63-105 4-42 (198)
475 TIGR00763 lon ATP-dependent pr 87.3 2.5 5.3E-05 48.3 9.1 19 60-78 347-365 (775)
476 PRK14970 DNA polymerase III su 87.1 4.7 0.0001 41.5 10.5 17 62-78 41-57 (367)
477 COG2874 FlaH Predicted ATPases 87.1 9 0.00019 36.0 10.9 126 62-209 30-167 (235)
478 PRK05728 DNA polymerase III su 87.1 5.6 0.00012 34.9 9.3 90 241-343 4-94 (142)
479 KOG0740 AAA+-type ATPase [Post 87.0 2.1 4.6E-05 44.4 7.6 56 167-222 244-312 (428)
480 PRK06647 DNA polymerase III su 87.0 3.9 8.5E-05 44.7 10.0 20 62-81 40-59 (563)
481 TIGR02868 CydC thiol reductant 87.0 1.2 2.7E-05 48.3 6.3 39 166-204 486-524 (529)
482 PHA02542 41 41 helicase; Provi 86.8 1.8 4E-05 46.1 7.3 35 62-101 192-226 (473)
483 TIGR03819 heli_sec_ATPase heli 86.8 1.8 4E-05 44.0 7.0 64 35-106 154-218 (340)
484 COG0210 UvrD Superfamily I DNA 86.7 1.7 3.7E-05 48.7 7.3 71 45-118 2-72 (655)
485 CHL00095 clpC Clp protease ATP 86.6 1.9 4.1E-05 49.6 7.7 20 61-80 201-220 (821)
486 PHA00350 putative assembly pro 86.6 1.7 3.7E-05 45.0 6.6 17 63-79 4-20 (399)
487 PF10593 Z1: Z1 domain; Inter 86.3 2.3 5.1E-05 40.9 7.1 87 290-381 110-201 (239)
488 cd03239 ABC_SMC_head The struc 86.3 0.98 2.1E-05 41.4 4.3 43 166-208 114-157 (178)
489 PRK13850 type IV secretion sys 86.3 0.57 1.2E-05 52.0 3.2 50 61-117 140-189 (670)
490 PRK09354 recA recombinase A; P 86.3 2.7 5.8E-05 42.8 7.8 51 53-108 47-103 (349)
491 PRK04537 ATP-dependent RNA hel 86.2 4 8.7E-05 44.8 9.8 75 92-177 256-334 (572)
492 PRK04328 hypothetical protein; 86.2 1.3 2.8E-05 43.0 5.3 52 60-117 23-74 (249)
493 PRK10865 protein disaggregatio 86.1 4.1 8.8E-05 47.0 10.0 18 61-78 200-217 (857)
494 cd01393 recA_like RecA is a b 85.9 1.3 2.8E-05 42.0 5.2 44 60-103 19-63 (226)
495 PF10412 TrwB_AAD_bind: Type I 85.8 0.89 1.9E-05 47.3 4.2 46 58-108 13-58 (386)
496 KOG0344 ATP-dependent RNA heli 85.7 24 0.00052 37.9 14.4 99 68-179 365-467 (593)
497 KOG0733 Nuclear AAA ATPase (VC 85.5 3 6.6E-05 44.9 7.8 47 166-212 602-658 (802)
498 TIGR03345 VI_ClpV1 type VI sec 85.5 4.5 9.7E-05 46.6 10.0 33 46-78 188-226 (852)
499 PRK06646 DNA polymerase III su 85.4 7.1 0.00015 34.8 9.1 91 240-343 3-93 (154)
500 cd01125 repA Hexameric Replica 85.3 4.6 0.0001 38.8 8.7 40 63-102 4-50 (239)
No 1
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-94 Score=695.45 Aligned_cols=493 Identities=59% Similarity=0.884 Sum_probs=471.0
Q ss_pred hHHHHhhcCCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC
Q 009477 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP 90 (534)
Q Consensus 11 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~ 90 (534)
++.++.+|++++|+|++|||+..++++|.++||.+|||+|+++||.+++++|++.+|.||||||.+|++|+++++..+.
T Consensus 9 ~~~~~~~k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s- 87 (529)
T KOG0337|consen 9 THREKGKKKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS- 87 (529)
T ss_pred hhHHhcCccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-
Confidence 4777778788889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCee
Q 009477 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (534)
Q Consensus 91 ~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~ 170 (534)
..|.++++++|||+|+.|+.++.++++++++++.++++||+++++|+..+..++|||++|||++++...++. +.|+.+.
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~-l~l~sve 166 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT-LTLSSVE 166 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-cccccee
Confidence 679999999999999999999999999999999999999999999999999999999999999999998864 8899999
Q ss_pred EEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhh
Q 009477 171 YVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (534)
Q Consensus 171 ~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (534)
||||||+|++++|||.+++.+++.++|.++|+++||||+|+.+.+++++++.+|..++++.+.++++.++..+..++..+
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
|..+|+.++..... +.+++||++|++|+|++...|...|+.+..+||+|++..|...+.+|+.++..+||+||+++||+
T Consensus 247 K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 247 KEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 99999999998754 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHH
Q 009477 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410 (534)
Q Consensus 331 Dip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 410 (534)
|+|.++.|||||+|.+...|+||+||++|+|+.|++|++|.+.|.+|+.++++++++++...+...+...
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~---------- 395 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC---------- 395 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc----------
Confidence 9999999999999999999999999999999999999999999999999999999999888766543321
Q ss_pred HHHhcCCccccCCchhHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCC-CCccccccc
Q 009477 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMFKNV 489 (534)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 489 (534)
....++|..|+...+...+..+.++..+.+++.+.+.+.++...|.++++.+|+++++|+|+++.. |+||.|...
T Consensus 396 ----~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~ 471 (529)
T KOG0337|consen 396 ----DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSF 471 (529)
T ss_pred ----ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhcccCCCcccccc
Confidence 122589999999999999999999999999999999999999999999999999999999998776 999999999
Q ss_pred cccchhcHHHHHHHHhcCCCCCceeeecccc
Q 009477 490 LEGGELMALAFSERLKAFRPKQTILEAEGEA 520 (534)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 520 (534)
++..|.+..+++.+|++|||++||||++.+.
T Consensus 472 ~e~~e~e~~~~~~kik~~r~~~tiFe~~~~~ 502 (529)
T KOG0337|consen 472 GENEEKEKLDILYKIKNYRSRETIFEINKSD 502 (529)
T ss_pred cchhhHHhhHHHHHHhhcccchhhhhhhhhH
Confidence 9998999999999999999999999999984
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-78 Score=581.21 Aligned_cols=374 Identities=37% Similarity=0.615 Sum_probs=360.1
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li 98 (534)
.....+|.+||+++.+++++++.||..||++|+++||.++.|+|+|+.|+||||||.+|++|++++|.+.. .-+++||
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--~~~~~lV 134 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--KLFFALV 134 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--CCceEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999998864 3488999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
|+||||||.|+.+.++.++..+|+++++++||.++..|...+...|+|+|||||||.+++.+.+.++++.++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHH
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (534)
++++++|...+..|+..+|..+|++|||||||+.+..+.++.+.+|..+.....-...+.+.+.|..++...|...|+++
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+.+. .+..+||||+|+..++.++-.|+..|+.+..+||.|+|..|.-.++.|++|..+||+|||+++||+|+|.+++|
T Consensus 295 l~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 295 LNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 9987 45899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChH
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~ 396 (534)
||||+|.+.++|+||+||+||+|++|.+|++++..|.+.+..+|..+++.+...+..+
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999999999987766544
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-74 Score=585.71 Aligned_cols=370 Identities=37% Similarity=0.611 Sum_probs=346.3
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhc----CCCCCeEEEEE
Q 009477 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALIL 99 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~----~~~~g~~~Lil 99 (534)
.|++++|++.+.++++..||..|||||.++||.++.|+|+++.|.||||||++|++|++.++..+ ....++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999852 23458999999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+||||||.|+...+.+|++...++..|++||.....|.+.+..+.+|+|||||||.++++. +.++++++.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred cccCChHHHHHHHHHhc-CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccc--cccCCCceEEEEEechhhHHHHHH
Q 009477 180 LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALL 256 (534)
Q Consensus 180 l~~~~~~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~L~ 256 (534)
|++|||..++..|+..+ ++.+|++++|||+|.++..++..++.+|..+.+... .....++.+....++...|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 556689999999999999999999999988887644 355667888888899888999999
Q ss_pred HHHHHhc-CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 257 YMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 257 ~~l~~~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
.+|.... ..++++||||+|+..|+++...|...++++..+||+.+|.+|+.+++.|++|+..||||||+||||||+|+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9888775 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 009477 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 336 ~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
++|||||+|.+.++|+||+||+||+|+.|.+++|++..+......+...++......|.
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~ 469 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPP 469 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCCh
Confidence 99999999999999999999999999999999999999999888888888666555543
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-73 Score=558.35 Aligned_cols=360 Identities=39% Similarity=0.633 Sum_probs=339.7
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC-CCCeEEEEEcC
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSP 101 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~-~~g~~~Lil~P 101 (534)
.+|++|+||.++++++..+||..|||||..+||..+-|+|++++|.||||||+||.+|++++|..... ....|||||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 38999999999999999999999999999999999999999999999999999999999999986543 24568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
||||+.|++.+.+.++.++++.+++.+||.+...|...+..+|||+|+|||||.+|+.+...+.++++.++|+||||+|+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech---hhHHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKHAALLYM 258 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~k~~~L~~~ 258 (534)
+.+|..++.+|++.+|.++|++||||||+..+.+++...+++|..+.++......+.+.+.|+.+++ ..+...|..+
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888899999987764 3466677777
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+.... ...+|||+.|+..|..+.-+|--.|+++.-+||+++|.+|-..++.|++++++||||||+++||+||+++..|
T Consensus 421 ~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 421 ITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred HHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEE
Confidence 77664 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHH
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~ 384 (534)
|||++|.+.+.|+||+||++|+|+.|.+++|+...|...+..+-..
T Consensus 499 INy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 499 INYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999998888776543
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-71 Score=589.84 Aligned_cols=365 Identities=41% Similarity=0.687 Sum_probs=341.4
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
..|++++|++.+++++.+.||..|||+|..+||.++.|+|+++.|+||||||++|++|+++++..........+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999774211111129999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
||||.|+.+.+..++.+. ++++..++||.++..+...+..+++|+|||||||++++.+ ..++++.+.++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhh
Confidence 999999999999999998 8999999999999999999998999999999999999997 57999999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccc--cCCCceEEEEEechhh-HHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEE-KHAALLYM 258 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~-k~~~L~~~ 258 (534)
++||.+++..|+..+|.++|+++||||+|..+..+++.++.+|..+.+..+.. ....+.+.++.+...+ |...|..+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~l 267 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKL 267 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888885555 6788999999999876 99999999
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+... ...++||||+|++.++.++..|...|+++..+||+++|.+|.++++.|++|+.+||||||+++||||+|++++|
T Consensus 268 l~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 268 LKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 9855 44589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc-cHHHHHHHHHHhCCCcc
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~-e~~~~~~l~~~~~~~~~ 390 (534)
||||+|.+++.|+||+||+||+|+.|.+++|+++. |...+..++..++..+.
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999986 89999999998877644
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.5e-71 Score=547.22 Aligned_cols=422 Identities=33% Similarity=0.561 Sum_probs=371.9
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhc--CCCCCeEEEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH--VPQGGVRALIL 99 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~--~~~~g~~~Lil 99 (534)
...|++..||+..+++|+++||..+|++|+.++|.++.|+|+++.|.||||||+||++|+++.+... ...++..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 4468999999999999999999999999999999999999999999999999999999999998753 23467889999
Q ss_pred cCcHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
|||||||.|++.+++++.++. ++.+..+.||.+.....+.+.++++|+|+|||||++|+++.+.+-+.+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999988 9999999999999888888888999999999999999999888888899999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCC-CCeEEEeccccc--cCCCceEEEEEechhhHHHHH
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAAL 255 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~--~~~~~~~~~~~~~~~~k~~~L 255 (534)
+++++||.+.+..|+..+|..+|+++||||.|+.+..+++..+. +|.++....... ....+++.|+.++...++..+
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 99999999999999999999999999999999999999998776 488887765543 345788989999999899999
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
..++++.... .++||||+|+..+.+++++|+...++|..+||..+|..|..+..+|++.+..||+||||+|||+|+|+|
T Consensus 321 ~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 321 YTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 9999988654 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHHhc
Q 009477 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415 (534)
Q Consensus 336 ~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
++||+||+|.++.+|+||+||+||.|+.|.++.++.+.|..++..+.. .++...+
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~---lpl~~~e---------------------- 454 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK---LPLEEFE---------------------- 454 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh---CCCcccC----------------------
Confidence 999999999999999999999999999999999999999999988772 2222221
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCC
Q 009477 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR 479 (534)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 479 (534)
+|..-.+......+.++.++. .+++.+..+|+.|...+..+|...++....++.
T Consensus 455 -------~~~~~~~~v~~~~~~li~~~y---~~~~aak~ay~syl~~y~s~slk~~~~~~~l~L 508 (543)
T KOG0342|consen 455 -------FPPLKPEDVQSQLEKLISKNY---SLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLEL 508 (543)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhhhhccchhhhcccccchhhH
Confidence 111122223334445555433 347888999999999998888777776554443
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-71 Score=507.61 Aligned_cols=373 Identities=35% Similarity=0.579 Sum_probs=352.5
Q ss_pred hcCCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEE
Q 009477 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (534)
Q Consensus 17 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~ 96 (534)
++-+...+|++|||++++++++.+.||+.|+.+|+.|+|.|++|+|+++.|+.|+|||.+|.+.+++.+.-.. ...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--r~tQ~ 98 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--RETQA 98 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc--ceeeE
Confidence 3446678999999999999999999999999999999999999999999999999999999998888776442 34689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
|||+||||||.|+.+.+..++...++.+..+.||.+..+..+.+..+.+++.|||||+++++.+ ..+.-..++++|+||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDE 177 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEecc
Confidence 9999999999999999999999999999999999999999999989999999999999999997 678899999999999
Q ss_pred CCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhh-HHHHH
Q 009477 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAAL 255 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L 255 (534)
||.|++.||..++..+++.+|++.|++++|||+|.++.+....++.+|..+-+..+......+++.|+.+..++ |.+.|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999998877 99999
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
+.+.... .-.+.+|||||+..++++.+.+++..+.+...||+|.|++|+.++.+||.|+.+|||+||+-+||+|+|.+
T Consensus 258 cdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 258 CDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 9988765 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 009477 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 336 ~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
++|||||+|.+.+.|+||+||.||.|++|.++.|+..+|...+.++|.++...+.+.|.
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999887777664
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-70 Score=520.57 Aligned_cols=373 Identities=36% Similarity=0.557 Sum_probs=346.0
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
+...+|++|||++|+.+.++.+|++.|||+|+.|||.|+.|+|++.+|.||||||++|.+|++++|.++. .|..++|+
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP--~giFalvl 81 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP--YGIFALVL 81 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC--CcceEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999999999874 57889999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc---CCCCCCCeeEEEEcC
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV---EDMSLKSVEYVVFDE 176 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~---~~~~l~~~~~iViDE 176 (534)
+||||||.|+.+.+..+++..+++++.++||.++-.|...+..+++++|+||||+.+++... -.+.+++++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999864 224588999999999
Q ss_pred CCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCC--CeEEEeccccccCCCceEEEEEechhhHHHH
Q 009477 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ 254 (534)
||++++..|...+..+.+.+|..+|+++||||+++.+..+...-... +..+....+......+.+.|+.++...+...
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 99999999999999999999999999999999999888776655554 3344444555667788999999999999999
Q ss_pred HHHHHHHhcC-CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCC
Q 009477 255 LLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (534)
Q Consensus 255 L~~~l~~~~~-~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip 333 (534)
|.++|...-+ .++.++||++|+..++.++..|+..++.+..+||.|+|.+|-..+.+|+.+..+||||||||+||+|||
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCC
Confidence 9999987655 578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 009477 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 334 ~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
.|++|||||+|.+|++|+||+||++|+|+.|.+++|+++.|...+..+|...++++.+.+.
T Consensus 322 ~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 322 TVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred ceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999877653
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-70 Score=543.40 Aligned_cols=418 Identities=32% Similarity=0.553 Sum_probs=361.3
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhc--CCCCCeEEEEEc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH--VPQGGVRALILS 100 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~--~~~~g~~~Lil~ 100 (534)
..|++|+|+..++++|++.+|..||.+|+++||..+.|+|+++.|.||||||+||++|+++.|... ....|.-+|||+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 479999999999999999999999999999999999999999999999999999999999998754 445688999999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
||||||.|+++++.+.|+++++..++++||.........+ ++.+|+|||||||+.|+.+...++.+++.++|+||||++
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 9999999999999999999999999999999977766554 679999999999999999988899999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccc--ccCCCceEEEEEechhhHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT--KISPDLKLAFFTLRQEEKHAALLYM 258 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (534)
++|||...+..|+..+|..+|++|||||.+.++..+++..+.+|.++.+.... ..+..+.+.|+.++..+|...|..+
T Consensus 228 LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sF 307 (758)
T KOG0343|consen 228 LDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSF 307 (758)
T ss_pred HHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887433 4566889999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCC
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~ 336 (534)
++.+ .+.++|||++||+++.++++.|+.. |++...+||.|+|..|..+..+|...+..||+|||+++||+|+|.|+
T Consensus 308 I~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 308 IKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 9988 4589999999999999999999976 88999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHH-HHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHHhc
Q 009477 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL-LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415 (534)
Q Consensus 337 ~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~-~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
|||++|.|.+..+|+||+||++|.+..|.++.+++|.|..++ ..++... .+....
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i----------------------- 441 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEI----------------------- 441 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhh-----------------------
Confidence 999999999999999999999999999999999999985544 3333211 111110
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhcCCCCCCccccccCCC
Q 009477 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD 476 (534)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 476 (534)
...+.-.......++.++.++.+ |+..+.+++-.|.++--......++....
T Consensus 442 ------~i~~~k~~~i~~~l~~ll~~~~e---Lk~~aqka~isY~rsi~~~rdK~~f~~~~ 493 (758)
T KOG0343|consen 442 ------KIDPEKLTSIRNKLEALLAKDPE---LKEYAQKAFISYLRSIYLMRDKRVFDVEK 493 (758)
T ss_pred ------ccCHHHhhhHHHHHHHHHhhCHH---HHHHHHHHHHHHHHHHHhhccchhhcchh
Confidence 01111122233445556655544 45667777777777665554445544433
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-69 Score=530.81 Aligned_cols=427 Identities=36% Similarity=0.528 Sum_probs=358.8
Q ss_pred CCCcCCCCC--CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC--CCCC-eEE
Q 009477 22 SGGFESLNL--SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGG-VRA 96 (534)
Q Consensus 22 ~~~f~~l~l--~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~--~~~g-~~~ 96 (534)
..+|++++. +++++.++...||..+||+|..+||.++.++|+++.|+||||||+||++|+++.+.... ...+ .-+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 457888864 59999999999999999999999999999999999999999999999999999984332 1222 468
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcc-CCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHh-cCCCCCCCeeEEE
Q 009477 97 LILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVV 173 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~-~~~~~l~~~~~iV 173 (534)
|||+|||||+.|+.+++..|... .++.+.+++||.+.++....+. .+++|+|||||||.+++.+ +..+++.+++++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999998876 7899999999998887776665 5789999999999999986 4446677999999
Q ss_pred EcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccc--cCCCceEEEEEechhhH
Q 009477 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEK 251 (534)
Q Consensus 174 iDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~k 251 (534)
+||||++++|||...+..|+..+|..+++=|||||...++.+++++++.||..+.+..... .+..+...|..|.+.+|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887775 56678999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccccc
Q 009477 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (534)
Q Consensus 252 ~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~G 329 (534)
...|++++.+. ..+++|||++||..++++...|... ..+...+||.|++.+|..+++.|++..-.+|+|||++|||
T Consensus 243 ~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 99999999874 6789999999999999999999875 6778899999999999999999999888999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHH
Q 009477 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409 (534)
Q Consensus 330 lDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 409 (534)
+|||++++||+||+|.++..|+||+||+||+|+.|.+++|+.+.|..|..-+ +..- .|..+....
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl----~i~~--~v~le~~~~--------- 385 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL----RIKG--KVELERIDT--------- 385 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH----HhcC--ccchhhhcc---------
Confidence 9999999999999999999999999999999999999999999887765433 2111 111111100
Q ss_pred HHHHhcCCccccCCchhHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCCCc
Q 009477 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH 483 (534)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 483 (534)
+... ....+.++.++.++.. +-....+++-.|-+++..+.+.+++|-|+|+..++.
T Consensus 386 ------------e~~~---~~~~~~ir~~~~~DR~---~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA 441 (567)
T KOG0345|consen 386 ------------EKAS---LSVYQDIRSIISKDRA---VLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLA 441 (567)
T ss_pred ------------cccc---hhHHHHHHHHhcccHH---HHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHH
Confidence 0000 0022223333333322 222334577788888899999999999988765433
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.4e-69 Score=535.06 Aligned_cols=365 Identities=37% Similarity=0.594 Sum_probs=345.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-------CCC
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQG 92 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-------~~~ 92 (534)
.+..+|++.||+..+++.+...||..|+|+|+.|||..++.+|+|+.|.||||||++|++|++-++.... ...
T Consensus 242 nplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred ccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 3456899999999999999999999999999999999999999999999999999999999998876432 235
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
|+.++|+.|||||++|+.+....|++..++++..++||.+.++|--.+..+|+|+|+|||+|.+.+.+ ..+-++...+|
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyv 400 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYV 400 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceE
Confidence 89999999999999999999999999999999999999999999888889999999999999999997 57889999999
Q ss_pred EEcCCCccccCChHHHHHHHHHhcCCC-------------------------CcEEEEEeeCCHHHHHHHHhcCCCCeEE
Q 009477 173 VFDEADCLFGMGFAEQLHKILGQLSEN-------------------------RQTLLFSATLPSALAEFAKAGLRDPHLV 227 (534)
Q Consensus 173 ViDEah~l~~~~~~~~~~~i~~~~~~~-------------------------~q~ll~SAT~~~~~~~~~~~~l~~~~~i 227 (534)
|+||||+|.+|||..++..++.++|.. +|+++||||||+.+..+++.|+.+|..+
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 999999999999999999999998741 6999999999999999999999999999
Q ss_pred EeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHH
Q 009477 228 RLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307 (534)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~ 307 (534)
.+.......+-+++.++.+..+++...|..++.+. -..++|||+|+++.|+.+++.|.+.|+.+..+||+-+|++|+.
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 99999999999999999999999999999999876 4679999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 009477 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (534)
Q Consensus 308 ~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~ 387 (534)
+++.|++|..+||||||+++||||+|+|.+|||||++.+..+|+||+||+||||+.|.+++|+++.|-..++++...+.+
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766654
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.7e-66 Score=540.42 Aligned_cols=369 Identities=33% Similarity=0.542 Sum_probs=338.1
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC-----CCCeEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-----QGGVRA 96 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~-----~~g~~~ 96 (534)
..+|+++||++.++++|.+.||..|||+|++|||.+++|+|+++.||||||||++|++|+++.+..... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 468999999999999999999999999999999999999999999999999999999999998865322 235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
|||+||||||.|+.+.+..+++..++++..++||.....+...+..+++|+|+||++|.+++.. ..+.+++++++|+||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEec
Confidence 9999999999999999999999999999999999999999888888999999999999999876 568899999999999
Q ss_pred CCccccCChHHHHHHHHHhcCC--CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHH
Q 009477 177 ADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ 254 (534)
||++++++|...+..++..++. .++.++||||++..+..+....+.+|..+.+.........+.+.++......|...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 9999999999999999999874 56789999999999999999999999888877666666667777777777788888
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~ 334 (534)
|..++... ...++||||+|+..++.+++.|...|+.+..+||++++.+|..+++.|++|+++||||||+++||+|+|+
T Consensus 246 l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 246 LQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 88888654 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCC
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p 393 (534)
+++||+||+|.+...|+||+||+||+|+.|.+++|++++|...+..++..++..+...+
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999888887765433
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-64 Score=547.67 Aligned_cols=372 Identities=34% Similarity=0.605 Sum_probs=342.7
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|++|+|++.++++|.++||.+|||+|.++||.++.|+|+|+.||||||||++|++|+++.+... ..++++|||+|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~P 82 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAP 82 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeC
Confidence 3469999999999999999999999999999999999999999999999999999999999988643 23578999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|++|+.|+++.++.+.... ++.+..++||.+.+.+...+..+++|+|+||++|++++.. ..++++++++||+||||++
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHH
Confidence 9999999999999987664 7999999999999999999989999999999999999986 5688999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (534)
++++|...+..++..+|..+|+++||||+|+.+..+.+.++.+|..+.+.......+.+.+.++.+....|...|..++.
T Consensus 162 l~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 162 LRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred hhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888887766667788888988888889999998887
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~ 340 (534)
.. ...++||||+|+..++.+++.|...|+.+..+||+|++.+|+.+++.|++|+.+||||||++++|||+|++++|||
T Consensus 242 ~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 242 AE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred hc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCC--CChHHH
Q 009477 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSEEEV 398 (534)
Q Consensus 341 ~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~--p~~~~~ 398 (534)
||+|.++..|+||+||+||+|+.|.+++|+.+.|...+..++..++..+... |..+.+
T Consensus 320 ~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~ 379 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379 (629)
T ss_pred eCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHH
Confidence 9999999999999999999999999999999999999999988888766543 444433
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=8.1e-65 Score=544.36 Aligned_cols=370 Identities=34% Similarity=0.571 Sum_probs=335.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCCCeEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~---~~~g~~~ 96 (534)
++..+|++++|++.++++|.++||..|||+|.++||.+++|+|+|++|+||||||++|++|++..+.... ...++.+
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 3456899999999999999999999999999999999999999999999999999999999998876432 2347889
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
|||+||||||.|+.+.++.|+...++++.+++||.....+...+..+++|+|+||++|.+++.. ....++++++||+||
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDE 285 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDE 285 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeeh
Confidence 9999999999999999999999999999999999999989888999999999999999999986 567799999999999
Q ss_pred CCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCC-CCeEEEecccc-ccCCCceEEEEEechhhHHHH
Q 009477 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAA 254 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~ 254 (534)
||++++++|..++..++..+++.+|+++||||+|+.+..+++.++. +|..+.+.... .....+.+.+..+...+|...
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~ 365 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK 365 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHH
Confidence 9999999999999999999999999999999999999999988875 56666554332 334567777777888888899
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~ 334 (534)
|..++......+.++||||+|+..++.++..|...++.+..+||++++.+|+.+++.|++|+.+|||||++++||||+|+
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~ 445 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKD 445 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCccc
Confidence 99998877667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCcc
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~ 390 (534)
+++|||||+|.+..+|+||+||+||+|+.|.+++|+++++...+.++...++....
T Consensus 446 v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q 501 (545)
T PTZ00110 446 VKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQ 501 (545)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998888777766655433
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-67 Score=490.12 Aligned_cols=370 Identities=31% Similarity=0.531 Sum_probs=347.8
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
-+++.||++.|..+++.++.++||+.|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++++... ....+++|+
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~il 159 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIIL 159 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccceeEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999998765 345789999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+||||||.|+...++++++..++.+...+||.+..+..-.+....+++|+||||++++..+ +-..+++..++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhh
Confidence 9999999999999999999999999999999999988888888999999999999999987 667899999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHH
Q 009477 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (534)
Q Consensus 180 l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (534)
+++..|...+..++..+|+++|++++|||+|-.+..|...++.+|..+.+-.+ .....+.+.|-.+.+..|.-.|-.+.
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999998887544 34557888899999999988887777
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
.+. .-.+.|||||+...+|.++....+.|+.|.++|+.|-|+.|.+++.+|++|.++.|||||.+.||+|++.+++||
T Consensus 318 skL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 318 SKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 655 457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 009477 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (534)
Q Consensus 340 ~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~ 395 (534)
|||+|.++++|.||+||.||.|..|.++++++.+|...++++|..++.++.+.|..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999999999999998887743
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.7e-64 Score=533.23 Aligned_cols=364 Identities=36% Similarity=0.608 Sum_probs=337.6
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|++|+|++.++++|.++||..|||+|++|+|.++.|+|+++.||||||||++|++|+++.+.... .+.++||++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--FRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--CCceEEEEeC
Confidence 46899999999999999999999999999999999999999999999999999999999999986432 3568999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|++|+.|+.+.++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+ ..+.++++++||+||||++
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHH
Confidence 9999999999999988754 7999999999999999999999999999999999999986 5678999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (534)
++++|...+..++..++..+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.++.+....+...|..++.
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776544 34558888888888889999999887
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~ 340 (534)
.. ...++||||+|+..++.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 239 ~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~ 316 (460)
T PRK11776 239 HH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN 316 (460)
T ss_pred hc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccC
Q 009477 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (534)
Q Consensus 341 ~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~ 391 (534)
||+|.++..|+||+||+||+|+.|.+++|+.++|...+..++..++..+..
T Consensus 317 ~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 317 YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999999888876654
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.9e-64 Score=540.07 Aligned_cols=371 Identities=36% Similarity=0.564 Sum_probs=339.1
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCCCeEEE
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRAL 97 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-----~~~g~~~L 97 (534)
.+|++|+|++.++++|.+.||..|||+|.++||.+++|+|+++.||||||||++|++|+++.+.... ...++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5799999999999999999999999999999999999999999999999999999999999886432 12357899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
||+||+||+.|+++.++.|+...++++..++||.....+...+..+++|+|+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999999988888899999999999999987644577899999999999
Q ss_pred CccccCChHHHHHHHHHhcCC--CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHH
Q 009477 178 DCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (534)
Q Consensus 178 h~l~~~~~~~~~~~i~~~~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (534)
|++++++|...+..++..++. .+|+++||||++..+..+...++.+|..+.+.........+.+.++......+...|
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999999987 789999999999999999999999887776666555556677778877788888888
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
..++... .+.++||||+|++.++.+++.|...++.+..+||++++.+|+.+++.|++|+++||||||++++|||+|++
T Consensus 249 ~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 249 LGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 8887643 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 009477 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (534)
Q Consensus 336 ~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~ 395 (534)
++|||||+|.+..+|+||+||+||.|+.|.+++|+++.+...+.+++.+++.++...|..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 999999999999999999999999999999999999999999999999888877655443
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.2e-64 Score=529.10 Aligned_cols=364 Identities=37% Similarity=0.621 Sum_probs=334.1
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC----CCCeEEEE
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALI 98 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~----~~g~~~Li 98 (534)
++|++|||+++++++|.+.||..|||+|+++||.++.|+|++++||||||||++|++|+++.+..... ....++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999865321 12358999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
|+||++||.|+.+.++.+.+..++++..++||.+.+.+...+..+++|+|+||++|++++.. ..+.++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHH
Confidence 99999999999999999999999999999999999988888888999999999999998875 56789999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHH
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (534)
++++++|...+..++..++..+|+++||||+++.+..++...+.+|..+.+.........+.+.+..+....+...+..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766666666777777777777777666666
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+... ...++||||+|++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 240 ~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 240 IGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 6532 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCc
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~ 389 (534)
|+||+|.++.+|+||+||+||+|..|.+++|++.+|...+.+++..+..++
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999998888765
No 19
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-64 Score=500.70 Aligned_cols=452 Identities=28% Similarity=0.435 Sum_probs=359.5
Q ss_pred CCCCCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CCCCe
Q 009477 20 SKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGV 94 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~----~~~g~ 94 (534)
=++..|.++||++.+...|.. +++..||.+|.++||.+++|+|+++.++||||||++|++|+++.|.... ...|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 456789999999999999976 6999999999999999999999999999999999999999999987543 24699
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEE
Q 009477 95 RALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (534)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iV 173 (534)
.+|||+||||||.|+++.++++.+.. =+-.+.+.||++.......+.++++|+|+|||||.+|+.+...+.++.+.++|
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999987653 34567888999999888899999999999999999999998889999999999
Q ss_pred EcCCCccccCChHHHHHHHHHhc-------------CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccc--------
Q 009477 174 FDEADCLFGMGFAEQLHKILGQL-------------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-------- 232 (534)
Q Consensus 174 iDEah~l~~~~~~~~~~~i~~~~-------------~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~-------- 232 (534)
+||+|+++++||...+..|+..+ |...|.+|+|||++..+..++...+.+|..|.++..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999998876 234688999999999999999999999999984321
Q ss_pred -----------------cccCCCceEEEEEechhhHHHHHHHHHHHhcC--CCCeEEEEEcChhhHHHHHHHHHHc----
Q 009477 233 -----------------TKISPDLKLAFFTLRQEEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (534)
Q Consensus 233 -----------------~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~--~~~~~IVF~~t~~~~e~l~~~L~~~---- 289 (534)
..++..+.+.|..|++.-+.-.|..+|.+... ...++|||+++++.+++-+..|...
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 12344567888899999998888888876433 4568899999999999999888652
Q ss_pred ------------------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhH
Q 009477 290 ------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351 (534)
Q Consensus 290 ------------------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~ 351 (534)
+.+...+||+|+|++|..+++.|...+..||+||||++||+|+|.|++||+||.|.++.+|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 24567899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHHhcCCccccCCchhHHHHH
Q 009477 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (534)
Q Consensus 352 qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 431 (534)
||+||++|+|.+|.++.|+.|.|..|+..++..-.. +.. +..+..+.. .........+..-++..-.+
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~-l~q-~~~~~~l~~----------~~~~~~k~~~~e~~~~at~~ 600 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM-LLQ-FDMEILLPA----------FKPRKDKAKTKEWQERATTL 600 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch-hhc-cchhhhhhh----------cCcccccccchhhhhhHHHH
Confidence 999999999999999999999999988777653322 111 111111110 00000111111111111122
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHhhcCCCCCC--ccccccCCCCCCCCCcccc
Q 009477 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS--KESIRRGKDLPREGLHPMF 486 (534)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 486 (534)
.-.++.++.. ...+++.+.+++..|.+.+..+. ..+++.++.+-..-+.-.|
T Consensus 601 q~~~e~~~~~---~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSF 654 (708)
T KOG0348|consen 601 QLNLERLVVG---DEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSF 654 (708)
T ss_pred HHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhh
Confidence 2233333333 34567778888888888777664 3445666655443333344
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.9e-63 Score=529.86 Aligned_cols=369 Identities=32% Similarity=0.529 Sum_probs=334.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhc-----CCCCCeE
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH-----VPQGGVR 95 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~-----~~~~g~~ 95 (534)
.-.+|++++|++.+++.|.+.||..|||+|.++||.+++|+|+++.|+||||||++|++|++..+... ....+++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 45579999999999999999999999999999999999999999999999999999999999887532 1235789
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
+|||+|||||+.|+.+.++.+++..++++..++||.....+...+..+++|+|+||++|.+++.+ ....++++++||+|
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViD 277 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLD 277 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEee
Confidence 99999999999999999999998889999999999999998888888999999999999999986 56789999999999
Q ss_pred CCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHH
Q 009477 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (534)
Q Consensus 176 Eah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (534)
|||+|++++|..++..++..++ .+|+++||||+|+.+..+++.++.++..+.+.........+.+.+..+....+...|
T Consensus 278 Ead~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l 356 (518)
T PLN00206 278 EVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKL 356 (518)
T ss_pred cHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHH
Confidence 9999999999999999998885 689999999999999999999999998888776666566677777788888888888
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHH-cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~-~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~ 334 (534)
..++........++||||+|+..++.++..|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++||+|+|+
T Consensus 357 ~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~ 436 (518)
T PLN00206 357 FDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLR 436 (518)
T ss_pred HHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCccc
Confidence 888876544457899999999999999999975 5899999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccC
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~ 391 (534)
+++|||||+|.+..+|+||+||+||+|..|.+++|++++|...+.++...++..-..
T Consensus 437 v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~ 493 (518)
T PLN00206 437 VRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAA 493 (518)
T ss_pred CCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999888888877666654333
No 21
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.7e-66 Score=494.97 Aligned_cols=364 Identities=35% Similarity=0.580 Sum_probs=335.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhh------cCCCCC
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ------HVPQGG 93 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~------~~~~~g 93 (534)
.+-++|.+|.++..+++.|+++|+..|||+|.+.+|.+++|+|.|..|-||||||++|.+|++....+ .....|
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999876543 234679
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcc------CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 94 VRALILSPTRDLALQTLKFTKELGRY------TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~------~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
+..||+||+||||.|+++.+..|... ..++...+.||....+|......+.+|+|+|||||.+++.+ +.++++
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 99999999999999999988877543 45789999999999999999999999999999999999987 678899
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR 247 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (534)
-..|+.+||||+|.++||..++..|+..+...+|++|||||||..+..|++..+..|..+.+......+-++.+.+..+.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877777777777888
Q ss_pred hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccc
Q 009477 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (534)
Q Consensus 248 ~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a 327 (534)
.+.|.-.|++.+++. ..++||||..+.+++.++++|--.|+.++.+||+-+|++|...++.|+.|+.+||||||+++
T Consensus 406 qEaKiVylLeCLQKT---~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 406 QEAKIVYLLECLQKT---SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred hhhhhhhHHHHhccC---CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 888888888888765 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc-cHHHHHHHHHHhCC
Q 009477 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSK 387 (534)
Q Consensus 328 ~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~-e~~~~~~l~~~~~~ 387 (534)
.|+|+|++.||||||+|...+.|+||+||+||.|++|.+.+|+..+ +...+.++...+..
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~E 543 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQE 543 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 56677777555543
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.4e-62 Score=513.47 Aligned_cols=366 Identities=37% Similarity=0.609 Sum_probs=331.3
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CCCeEEEEEc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILS 100 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--~~g~~~Lil~ 100 (534)
.+|++++|++.+++++.++||..||++|++++|.++.|+|++++||||||||++|++|+++.+..... ..+.++||++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 37999999999999999999999999999999999999999999999999999999999998865321 2346899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
||++|+.|+.+.+..++...++++..++||.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||||++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHH
Confidence 999999999999999999999999999999999998888888999999999999999886 5678999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCH-HHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYM 258 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~ 258 (534)
++++|...+..+...++...|+++||||++. .+..+....+.+|..+...........+.+.+..+.. ..+...|..+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999999999999999985 5788888888899888776665555667777666653 5566666666
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+.. ....++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+++||||||++++|+|+|++++|
T Consensus 240 ~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 240 LKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred Hhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 653 246899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccC
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~ 391 (534)
||||+|.+...|+||+||+||+|..|.+++++..+|...+..++.++..++..
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999888877766543
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-64 Score=481.51 Aligned_cols=368 Identities=35% Similarity=0.594 Sum_probs=328.1
Q ss_pred CCCCCCcCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CCCC
Q 009477 19 KSKSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGG 93 (534)
Q Consensus 19 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~----~~~g 93 (534)
..+..+|++ ++.-++++..|++.||..|||+|.+|+|.+++|.|+++.|+||+|||++|++|.+-.+.... ...+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 356778865 47789999999999999999999999999999999999999999999999999877665332 2357
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEE
Q 009477 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (534)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iV 173 (534)
+.+|+++|||||+.|+.-..+.+. +-+++..+++||.+..+|.+.+..+.+|+|+||++|.++... ..+++.++.|+|
T Consensus 295 p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 889999999999999998888775 568999999999999999999999999999999999998875 568899999999
Q ss_pred EcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccc-ccCCCceEEEEEechhhHH
Q 009477 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKH 252 (534)
Q Consensus 174 iDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~k~ 252 (534)
+||||+|++|||..++.+|+-...+.+|+++.|||+|+.+..++..|+.+|..+.+..-. .....+.+.++.....+|.
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 999999999999999999999999999999999999999999999999999887665433 3344567777666666677
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCC
Q 009477 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332 (534)
Q Consensus 253 ~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDi 332 (534)
..+..+++ ...+..++||||.++..++.+...|.-.|+....+||+-+|.+|+..++.|+.|+++|||+||+++||+|+
T Consensus 453 ~~~~~f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv 531 (629)
T KOG0336|consen 453 EIVQFFVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV 531 (629)
T ss_pred HHHHHHHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc
Confidence 55555554 45678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCc
Q 009477 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (534)
Q Consensus 333 p~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~ 389 (534)
|+++||+|||+|.+++.|+||+||+||+|+.|.+++|++.+|...+..+-..+.+.-
T Consensus 532 ~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ae 588 (629)
T KOG0336|consen 532 PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAE 588 (629)
T ss_pred hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999888777766555433
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-60 Score=507.06 Aligned_cols=366 Identities=34% Similarity=0.582 Sum_probs=333.8
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCC-----CCeEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-----GGVRA 96 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~-----~g~~~ 96 (534)
..+|.+++|++.+.++|.+.||..||++|.++++.+++|+|+|+.++||||||++|++|+++.+...... .+.++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4579999999999999999999999999999999999999999999999999999999999998754321 15689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
|||+||++|+.|+.+.++.+.+..++.+..++||.+...+.+.+. ..++|+|+||++|++++.. ....++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEec
Confidence 999999999999999999999999999999999988887776664 5789999999999988775 56779999999999
Q ss_pred CCCccccCChHHHHHHHHHhcCC--CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHH
Q 009477 176 EADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253 (534)
Q Consensus 176 Eah~l~~~~~~~~~~~i~~~~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~ 253 (534)
|||++++++|..++..+++.++. .+|++++|||++..+..+++.++.+|..+.+.........+.+.++.+...++..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 99999999999999999998864 5799999999999999999999999988888777666667777788877788888
Q ss_pred HHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCC
Q 009477 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (534)
Q Consensus 254 ~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip 333 (534)
.|..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 888877653 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCcc
Q 009477 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 334 ~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~ 390 (534)
++++||+||+|.+...|+||+||+||.|+.|.+++|++.+|..++..++.+++.++.
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999899999999998874
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-62 Score=492.89 Aligned_cols=365 Identities=36% Similarity=0.561 Sum_probs=336.2
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--------CCC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--------QGG 93 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--------~~g 93 (534)
-.+|.+-.+.+.+...++..||..|||+|+.+||.+..|+|.+++|+||||||.+|++|++.++..... ...
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 448888889999999999999999999999999999999999999999999999999999999876422 124
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEE
Q 009477 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (534)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iV 173 (534)
++++|++|||||+.|+++..++|.....++++.++||.+...+.+.+..+++|+|+|||+|.++++. +.+.+++++++|
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~v 231 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLV 231 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEE
Confidence 8999999999999999999999998999999999999999999999999999999999999999997 779999999999
Q ss_pred EcCCCcccc-CChHHHHHHHHHhcCC----CCcEEEEEeeCCHHHHHHHHhcCCC-CeEEEeccccccCCCceEEEEEec
Q 009477 174 FDEADCLFG-MGFAEQLHKILGQLSE----NRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFTLR 247 (534)
Q Consensus 174 iDEah~l~~-~~~~~~~~~i~~~~~~----~~q~ll~SAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~~ 247 (534)
+||||+|++ ++|..++.+|+.+... ++|+++||||.|..+...+..++.+ +..+.+..-.....++.+.+..|.
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 999999999 9999999999988754 7899999999999999988888886 788888877788889999999999
Q ss_pred hhhHHHHHHHHHHHhcC--CCC-----eEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 009477 248 QEEKHAALLYMIREHIS--SDQ-----QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (534)
Q Consensus 248 ~~~k~~~L~~~l~~~~~--~~~-----~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iL 320 (534)
..+|...|+.++..... ..+ .++|||.|++.+..+...|...++++..+||+.+|.+|.+.++.|++|.+.+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 99999999999986542 233 89999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 009477 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (534)
Q Consensus 321 I~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~ 387 (534)
|||++++||+|+|+|+||||||+|.+..+|+||+||+||+|+.|.+.+|+...+......+...+..
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997776666666655543
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-61 Score=476.32 Aligned_cols=374 Identities=36% Similarity=0.569 Sum_probs=338.3
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCCCeE
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVR 95 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~---~~~g~~ 95 (534)
.+...+|+.+|+++.+..++...-|.+|||+|.+++|..+.|+|++..|.||||||.||+.|++-++.... ...|+-
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 35677899999999999999999999999999999999999999999999999999999999999887542 357899
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
.||+|||||||.|+..++++|++..++++++++||.+..+|...+..++.|||||||||++++. ++..++.++.++|||
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk-mKatn~~rvS~LV~D 377 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK-MKATNLSRVSYLVLD 377 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH-hhcccceeeeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999987 478999999999999
Q ss_pred CCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHH
Q 009477 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAA 254 (534)
Q Consensus 176 Eah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~ 254 (534)
|||+|+++||..++..|..++.+.+|+|+||||++..++.+++..+.+|.-+....-......+.+.+..+.. ..|..-
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~w 457 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNW 457 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999766554333444566676666655 556677
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~ 334 (534)
|++.|-+.. ..+++|||+.-+..++.++..|...++++..+||+++|.+|.+++.+|+.+...|||+||+++||+|||.
T Consensus 458 l~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 458 LLRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPS 536 (731)
T ss_pred HHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccc
Confidence 766666543 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
+..|||||+-.+++.|+||+||+||+|.+|.+|+++++.|....-.+-..|.-.-+..|.
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~ 596 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPD 596 (731)
T ss_pred cceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCCh
Confidence 999999999999999999999999999999999999999988766665555544444443
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-61 Score=471.38 Aligned_cols=364 Identities=34% Similarity=0.513 Sum_probs=326.6
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CCCCeEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRAL 97 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~----~~~g~~~L 97 (534)
..+|++|||++.+++++.+.||..||-+|..|||.+++|+|+++.|.||||||.+|++|+++.+.... ...|+.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 36999999999999999999999999999999999999999999999999999999999999987542 34688999
Q ss_pred EEcCcHHHHHHHHHHHHHhhccC--CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 98 ILSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~--~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
||+||+|||+|+++++..+..+. .+++.-+....+.......+...|+|+|+||++++.++.......++.++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999888876553 4666666655555556677888999999999999999986444678999999999
Q ss_pred CCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccccc-CCCceEEEEEechhhHHHH
Q 009477 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPDLKLAFFTLRQEEKHAA 254 (534)
Q Consensus 176 Eah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~k~~~ 254 (534)
|||.++..||.+.+..+...+|+..|.+++|||+.+++..+-+.++.+|..+.+...+.. +..+.+.++.|...+|...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 999999999999999999999999999999999999999999999999999888665543 4578888899998999988
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC----------
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD---------- 324 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td---------- 324 (534)
+..+++-.+ -.+++|||+||.+.+-.+.-.|+..|++..++.|.|+...|-.++++|..|-.+|+||||
T Consensus 258 lyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 258 LYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 887776433 358999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------cccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHH
Q 009477 325 -------------------------VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (534)
Q Consensus 325 -------------------------v~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~ 379 (534)
-++||||+.+|.+|+|||+|.++..|+||+||++|++++|.+++|+.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 2579999999999999999999999999999999999999999999999887666
Q ss_pred HHHHHhC
Q 009477 380 DLHLFLS 386 (534)
Q Consensus 380 ~l~~~~~ 386 (534)
.++.++.
T Consensus 417 ~le~~~~ 423 (569)
T KOG0346|consen 417 SLESILK 423 (569)
T ss_pred HHHHHHh
Confidence 6666554
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-61 Score=482.98 Aligned_cols=378 Identities=33% Similarity=0.521 Sum_probs=323.1
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcC---------
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHV--------- 89 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~--------- 89 (534)
.....|..|+|+.+++++|..+||..||+||..++|.+..| .|+++.|.||||||+||.|||++.+.+..
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 33457999999999999999999999999999999999998 79999999999999999999999554321
Q ss_pred CCCCeE--EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC--CC
Q 009477 90 PQGGVR--ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MS 165 (534)
Q Consensus 90 ~~~g~~--~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~--~~ 165 (534)
...+++ +||++||||||.|+.+.+...+.++++++..++||.....|.+.+...++|||+|||||..++.+... -.
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 223555 99999999999999999999999999999999999999999999999999999999999999987443 25
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcC-----CCCcEEEEEeeCCHH---------------------HHHHHH-
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLPSA---------------------LAEFAK- 218 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~-----~~~q~ll~SAT~~~~---------------------~~~~~~- 218 (534)
++++.++|+||+|||.+.|+.+.+..++..+. ..+|++.||||++-. ++.+++
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 88999999999999999999999999987764 468999999998421 222222
Q ss_pred hcC-CCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeec
Q 009477 219 AGL-RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (534)
Q Consensus 219 ~~l-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~ 297 (534)
.++ .+|.++.+.........+....+.|+..+|--.|..+|..+ .+++|||||+.+.+..++-+|...++....+|
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 222 45677777666555555555555666666666666666544 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 298 g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
..|.|.+|-+.+++|++....|||||||||||+|||+|.|||+|..|.+.+.|+||.||++||+..|.++.++.|.|+..
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccC--CCChHHHHh
Q 009477 378 LLDLHLFLSKPIRA--APSEEEVLL 400 (534)
Q Consensus 378 ~~~l~~~~~~~~~~--~p~~~~~~~ 400 (534)
+..+..-+.+.... .|..+.++.
T Consensus 575 ~~KL~ktL~k~~dlpifPv~~~~m~ 599 (731)
T KOG0347|consen 575 LKKLCKTLKKKEDLPIFPVETDIMD 599 (731)
T ss_pred HHHHHHHHhhccCCCceeccHHHHH
Confidence 88888777764333 355444443
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5e-59 Score=486.82 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=330.3
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|+++|+++.+++++.+.||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+... ..+.++|||+|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILAP 104 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999887543 24678999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
|++|+.|+.+.+..++...++.+..++||.....+...+..+++|+|+||+++++.+.+ ....++++++||+||||++.
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHH
Confidence 99999999999999998888999999999988888888888899999999999999886 55779999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMIR 260 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~l~ 260 (534)
+.+|...+.+++..++...|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888877666555455566666666654 335566666655
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~ 340 (534)
.. ...++||||+|+.+++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 264 ~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~ 341 (401)
T PTZ00424 264 TL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 341 (401)
T ss_pred hc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE
Confidence 43 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCC
Q 009477 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 341 ~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p 393 (534)
+|+|.+...|+||+||+||.|+.|.|+.++++++...+..++..++..+...+
T Consensus 342 ~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 342 YDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred ECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999888887766544
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-59 Score=498.08 Aligned_cols=374 Identities=34% Similarity=0.592 Sum_probs=347.3
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCCCeE
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVR 95 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~---~~~g~~ 95 (534)
.+.-.+|.+.|++..++..++++||..|+|||.+|||+|++|+|+|+.|.||||||++|++|++.++.... ...|+-
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 46678999999999999999999999999999999999999999999999999999999999997766443 246999
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC--CCCCCeeEEE
Q 009477 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MSLKSVEYVV 173 (534)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~--~~l~~~~~iV 173 (534)
++|++|||||+.|+.++++.|++.+++++++++||....++...+..++.|+|||||++++.+..... .++.++.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999875321 2355556999
Q ss_pred EcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec-hhhHH
Q 009477 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKH 252 (534)
Q Consensus 174 iDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~ 252 (534)
+||||+|++++|..++..|+..+++.+|+++||||+|..+..+++..+..|..+.+..+.....++.+.+..+. ..+|+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888889999999998 88999
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCC
Q 009477 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332 (534)
Q Consensus 253 ~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDi 332 (534)
..|+.+|....+ .+++||||..+..|..+.+.|.+.|+.+..+||+.+|..|..++++|+++.+.+||+|++++||+|+
T Consensus 601 ~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv 679 (997)
T KOG0334|consen 601 LKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV 679 (997)
T ss_pred HHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc
Confidence 999999998765 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCC
Q 009477 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 333 p~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p 393 (534)
+.+.+|||||+|....+|+||+||+||+|++|.|++|+++++..+..++...+...-...|
T Consensus 680 ~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 680 KELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred ccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 9999999999999999999999999999999999999999999999999888844333334
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-59 Score=450.60 Aligned_cols=366 Identities=35% Similarity=0.607 Sum_probs=344.8
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.+|++|||.+++++++...||+.|+.+|+.||..+..|.|+++.+++|+|||.+|++++++.+.-.. ...++++++||
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~--ke~qalilaPt 103 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV--KETQALILAPT 103 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch--HHHHHHHhcch
Confidence 4899999999999999999999999999999999999999999999999999999999999875432 34679999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
|||+.|+.++...++...+.++..++||.....+...+. ..+.|+|+|||++++.+... .+....++++|+||+|+++
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEML 182 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhh
Confidence 999999999999999999999999999998886655554 46899999999999999874 7888889999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 261 (534)
..||.+++..+++.+|++.|++++|||+|.++....+.++.+|..+.+..+......+.+.|+.+..++|.+.|+.+..
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~- 261 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR- 261 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999888888899999999999999999999987
Q ss_pred hcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEc
Q 009477 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341 (534)
Q Consensus 262 ~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~ 341 (534)
.-.+.+|||||+..+..+...|...+..+..+||+|++.+|..++..|+.|..+|||+|+.+|||+|+..+..||||
T Consensus 262 ---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 262 ---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred ---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeee
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 009477 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (534)
Q Consensus 342 ~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~ 395 (534)
+.|...+.|+||+||+||.|++|.++++++.++...+.+++.++..++.+.|..
T Consensus 339 dlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 339 DLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred ccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999998887754
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=442.02 Aligned_cols=362 Identities=31% Similarity=0.531 Sum_probs=323.9
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
..+|++|+|.|+++++|..+||..|+.||..|+|.++.. ++.|+.++.|+|||+||.+.++.+..... .-++++.|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~PQ~iCL 166 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVPQCICL 166 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCCCceee
Confidence 348999999999999999999999999999999999985 78999999999999999999999987653 34789999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+||||||.|+.+++.+.|++.+++....+-|.....- -.-..+|+|+|||.+++++...+.+.++.++.+|+||||.
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV 243 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh
Confidence 9999999999999999999999999888876622110 0113569999999999999987788999999999999999
Q ss_pred ccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHHHHH
Q 009477 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (534)
Q Consensus 180 l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (534)
|.+ .||.++-..|...+|.+.|+++||||....+..|+...+.++..+.+..+.....++.+.|+.|.. .+|+.+|.+
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ 323 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN 323 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH
Confidence 885 579999999999999999999999999999999999999999999999999999999999999876 568888888
Q ss_pred HHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCE
Q 009477 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (534)
Q Consensus 258 ~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~ 337 (534)
+..- -.-++.||||.|+..+..++..+...|+.+..+||+|.-.+|..+++.|+.|..+|||+|+++|||+|++.|++
T Consensus 324 lyg~--~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 324 LYGL--LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred HHhh--hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEE
Confidence 5543 25689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC------CChhhhHHhhccCCCCCCcceEEEEeccccH-HHHHHHHHHhCCCcc
Q 009477 338 VINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDM-AYLLDLHLFLSKPIR 390 (534)
Q Consensus 338 VI~~~~p------~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~-~~~~~l~~~~~~~~~ 390 (534)
|||||+| +++++|+||+||+||.|++|.++.++...+. ..+..++..++....
T Consensus 402 VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~ 461 (477)
T KOG0332|consen 402 VVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIK 461 (477)
T ss_pred EEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcce
Confidence 9999999 4788999999999999999999999988654 445577777765443
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-54 Score=426.89 Aligned_cols=360 Identities=31% Similarity=0.457 Sum_probs=307.9
Q ss_pred CcCCCCCCHHHH----------HHHHHCCCCCCcHHHHHHHHHHhc---------CCcEEEEcCCCChHHHHHHHHHHHH
Q 009477 24 GFESLNLSPNVF----------RAIKRKGYKVPTPIQRKTMPLILS---------GADVVAMARTGSGKTAAFLVPMLQR 84 (534)
Q Consensus 24 ~f~~l~l~~~l~----------~~l~~~g~~~~~~~Q~~ai~~il~---------~~d~i~~a~TGsGKT~~~l~p~l~~ 84 (534)
.|+.+|++.... ..+..+++....|+|..++|.++. .+|+.+.||||||||++|.+|+.+.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 366777665544 448999999999999999999853 4799999999999999999999999
Q ss_pred hhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhC-CC----CEEEECchHHHHHHH
Q 009477 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NP----DIIIATPGRLMHHLS 159 (534)
Q Consensus 85 l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~-~~----~IiV~Tp~~l~~~l~ 159 (534)
+...... ..|++||+||++|+.|+++.+.++...+++.|+.+.|..+.+.....+.+ .+ ||+|+|||||.+|+.
T Consensus 208 L~~R~v~-~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPVK-RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCcc-ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 8876544 58999999999999999999999999999999999999998888777765 33 899999999999999
Q ss_pred hcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC----------------------------------CCCcEEEE
Q 009477 160 EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS----------------------------------ENRQTLLF 205 (534)
Q Consensus 160 ~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~----------------------------------~~~q~ll~ 205 (534)
+++.++|+++.++||||||||++..|...+..++..+. +..+.+++
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 98999999999999999999998777766555544331 12246889
Q ss_pred EeeCCHHHHHHHHhcCCCCeEEEec----cccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHH
Q 009477 206 SATLPSALAEFAKAGLRDPHLVRLD----VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (534)
Q Consensus 206 SAT~~~~~~~~~~~~l~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~ 281 (534)
|||++..-..+...-+..|....+. ..-..++.+.+.++.+....+.-.+..++... +..++|+|+++...+.+
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANR 444 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHH
Confidence 9999777777777778888666554 23345556777778888878888888888755 67899999999999999
Q ss_pred HHHHHH----HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccC
Q 009477 282 LNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357 (534)
Q Consensus 282 l~~~L~----~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~ 357 (534)
++..|. ....++..+.|.++++.|.+.++.|+.|++++|||+|+++||+|+.++++|||||+|.+...|+||+||+
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 998887 3466778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEeccccHHHHHHHHHHhC
Q 009477 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (534)
Q Consensus 358 gR~g~~G~~i~~~~~~e~~~~~~l~~~~~ 386 (534)
||||+.|.|++++..++...|.++-...+
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhc
Confidence 99999999999999999888877654443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.3e-53 Score=467.13 Aligned_cols=362 Identities=21% Similarity=0.298 Sum_probs=283.0
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
..++|.+ .+++.+.++|.++||+.||++|.++||.+++|+|+++.+|||||||++|++|+++.+... .+.++|||+
T Consensus 13 ~~~~~~~-~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~ 88 (742)
T TIGR03817 13 RTAPWPA-WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLA 88 (742)
T ss_pred ccCCCCC-cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEc
Confidence 3444544 389999999999999999999999999999999999999999999999999999998753 467899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcC---CCCCCCeeEEEEcCC
Q 009477 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEA 177 (534)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~---~~~l~~~~~iViDEa 177 (534)
|||+|+.|+.+.++.++ ..++++..+.|+... .+...+..+++|+|+||++|...+.... ...++++++||+|||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999987 457888887777664 4445666789999999999875332100 012789999999999
Q ss_pred CccccCChHHHHHHHH-------HhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec---
Q 009477 178 DCLFGMGFAEQLHKIL-------GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--- 247 (534)
Q Consensus 178 h~l~~~~~~~~~~~i~-------~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~--- 247 (534)
|.+.+. |...+..++ ...+.++|++++|||+++... ++..+++.|..+ ++.+..........+....
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~ 243 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTE 243 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccc
Confidence 998763 555544443 334667899999999998754 666777777443 3333322222222222111
Q ss_pred --h-------hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--------CCCceeecCCCCHHHHHHHHH
Q 009477 248 --Q-------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVS 310 (534)
Q Consensus 248 --~-------~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--------~~~~~~l~g~~~~~~r~~~~~ 310 (534)
. .........++...+..+.++||||+|+..++.++..|... +..+..+||++++++|..+++
T Consensus 244 ~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 244 LTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred cccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 0 00011222233333335789999999999999999988763 567889999999999999999
Q ss_pred HHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecc--ccHHHHHHHHHHhCCC
Q 009477 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS--EDMAYLLDLHLFLSKP 388 (534)
Q Consensus 311 ~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~--~e~~~~~~l~~~~~~~ 388 (534)
+|++|++++||||+++++|||+|++++||+||+|.+...|+||+||+||+|+.|.+++++.. .|..++...+.+++.+
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999874 4555666677777776
Q ss_pred ccC
Q 009477 389 IRA 391 (534)
Q Consensus 389 ~~~ 391 (534)
+..
T Consensus 404 ~e~ 406 (742)
T TIGR03817 404 VEA 406 (742)
T ss_pred Ccc
Confidence 544
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.9e-53 Score=425.43 Aligned_cols=353 Identities=30% Similarity=0.482 Sum_probs=318.9
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|+++-|..+++.+|+..||..||++|..|||.++.+-|.|+.|..|+|||++|.+.+++.+.... ...+.+|++|
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--~~~q~~Iv~P 101 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--SHIQKVIVTP 101 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--CcceeEEEec
Confidence 56899999999999999999999999999999999999999999999999999999999999887653 3578999999
Q ss_pred cHHHHHHHHHHHHHhhcc-CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|||+|.|+.+.+..++.. .|.++...+||.........+ +.+.|+||||||+.++++. ..++.+.+.++|+||||.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL 179 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKL 179 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHh-cCCCccceeEEEeccHHhh
Confidence 999999999999998864 699999999998876655444 5688999999999999886 7899999999999999999
Q ss_pred cc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechh--------hH
Q 009477 181 FG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--------EK 251 (534)
Q Consensus 181 ~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~k 251 (534)
.+ ..|..++..|+..+|..+|++.+|||-|..+......+|.+|.++++..+....-.+++.++.+... .|
T Consensus 180 ~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlk 259 (980)
T KOG4284|consen 180 MDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLK 259 (980)
T ss_pred hchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHH
Confidence 98 5699999999999999999999999999999999999999999999988887777888888776553 25
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCC
Q 009477 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331 (534)
Q Consensus 252 ~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlD 331 (534)
...|-+++... +-.+.||||+....|+-++..|...|+.+.++.|.|+|.+|..+++.+++-.++|||+||..+||||
T Consensus 260 lq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284|consen 260 LQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred HHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCC
Confidence 55555555544 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccH-HHHHH
Q 009477 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM-AYLLD 380 (534)
Q Consensus 332 ip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~-~~~~~ 380 (534)
-|++++|||.|.|.+..+|.||+|||||.|..|.+++|+..... ..|..
T Consensus 338 a~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~ 387 (980)
T KOG4284|consen 338 ADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTA 387 (980)
T ss_pred ccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHH
Confidence 99999999999999999999999999999999999999987543 44433
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-51 Score=412.54 Aligned_cols=357 Identities=33% Similarity=0.479 Sum_probs=311.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC---CCCeEEEEEcCcHH
Q 009477 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRALILSPTRD 104 (534)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~---~~g~~~Lil~Ptre 104 (534)
...++.++..+...||..|+|+|.+|+|.++.+++++++||||||||++|.+|++++|..... ..|.+++|+.|||+
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 356888999999999999999999999999999999999999999999999999999987653 56899999999999
Q ss_pred HHHHHHHHHHHhh--ccCCCeEEEEEcCCCHHHHHH-HHhCCCCEEEECchHHHHHHHhcCC--CCCCCeeEEEEcCCCc
Q 009477 105 LALQTLKFTKELG--RYTDLRISLLVGGDSMESQFE-ELAQNPDIIIATPGRLMHHLSEVED--MSLKSVEYVVFDEADC 179 (534)
Q Consensus 105 La~Q~~~~~~~~~--~~~~l~~~~~~gg~~~~~~~~-~~~~~~~IiV~Tp~~l~~~l~~~~~--~~l~~~~~iViDEah~ 179 (534)
|+.|++..+.++. ..+++++..........+... .....++|+|+||-++..++.. +. +++..+.++|+||+|+
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~-~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL-GKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC-CCccchhheeeeEeechHHh
Confidence 9999999999998 666666665554432222211 1223578999999999988874 22 5789999999999999
Q ss_pred cccC-ChHHHHHHHHHhcCC-CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEe-chhhHHHHHH
Q 009477 180 LFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-RQEEKHAALL 256 (534)
Q Consensus 180 l~~~-~~~~~~~~i~~~~~~-~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~k~~~L~ 256 (534)
+++. .|..++..|+..+.. ...+-+||||++..+++++...+.++..+.+...+.....+.+..+.+ ....|..++.
T Consensus 300 lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~r 379 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALR 379 (593)
T ss_pred hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHH
Confidence 9999 999999999987654 456678999999999999999999998888887776666777776665 4566888999
Q ss_pred HHHHHhcCCCCeEEEEEcChhhHHHHHHHH-HHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 257 ~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L-~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
+++...+ ..+++||+.+.+.+..+...| .-.++++.++||..++.+|++.+++||.|++.|||||++++||+|+.++
T Consensus 380 q~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gv 457 (593)
T KOG0344|consen 380 QLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGV 457 (593)
T ss_pred HHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCc
Confidence 9998764 479999999999999999999 5668999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 009477 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (534)
Q Consensus 336 ~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~ 387 (534)
+.|||||+|.+.-.|+||+||+||+|+.|.+|+|++..|.+++..+......
T Consensus 458 n~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 458 NLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred ceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999998877655543
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-48 Score=413.66 Aligned_cols=325 Identities=20% Similarity=0.312 Sum_probs=258.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..||..|+|+|.++|+.+++|+|+++.+|||||||++|++|++.. +..+|||+|+++|+.|+...++.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~~--- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKAS--- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHHc---
Confidence 359999999999999999999999999999999999999998852 346999999999999988888765
Q ss_pred CCCeEEEEEcCCCHHHHHHH----HhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCC--hHHHHHH-
Q 009477 120 TDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK- 191 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~----~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~--~~~~~~~- 191 (534)
++.+..+.++....++... ..+.++|+++||+++.........+ ...++++|||||||+++++| |...+..
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 4778888887766543322 2346899999999986432111122 56789999999999999887 4444443
Q ss_pred --HHHhcCCCCcEEEEEeeCCHHHHHHHHhc--CCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCC
Q 009477 192 --ILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267 (534)
Q Consensus 192 --i~~~~~~~~q~ll~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~ 267 (534)
+...+ ++.+++++|||+++.+....... +.+|..+..... .+++...... ........+...+.+. .++.
T Consensus 154 ~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~-~~~~ 227 (470)
T TIGR00614 154 GSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEVRR-KTPKILEDLLRFIRKE-FKGK 227 (470)
T ss_pred HHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEEEe-CCccHHHHHHHHHHHh-cCCC
Confidence 33444 47889999999998876554443 445655443222 2233222211 1123455666666542 2456
Q ss_pred eEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCCh
Q 009477 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347 (534)
Q Consensus 268 ~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~ 347 (534)
.+||||+|+++++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+|++|.+.
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~ 307 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSM 307 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhccCCCCCCcceEEEEeccccHHHHHHHH
Q 009477 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (534)
Q Consensus 348 ~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~ 382 (534)
..|+||+||+||.|.+|.|+.|+++.|...+..+.
T Consensus 308 ~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 308 ESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999887776653
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.2e-48 Score=421.82 Aligned_cols=341 Identities=21% Similarity=0.291 Sum_probs=265.3
Q ss_pred CCcCC--CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 23 GGFES--LNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 23 ~~f~~--l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
..|.+ ++.+..+...++. .||..++|+|+++|+.++.|+|+++.+|||+|||++|++|++.. +..+|||
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVI 506 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVI 506 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEE
Confidence 34554 4455556555554 69999999999999999999999999999999999999999863 2359999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh------CCCCEEEECchHHHH---HHHhcCCC-CCCCe
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA------QNPDIIIATPGRLMH---HLSEVEDM-SLKSV 169 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~------~~~~IiV~Tp~~l~~---~l~~~~~~-~l~~~ 169 (534)
+|+++|+.++...+.. .++.+..+.++....++...+. ..++|+|+||++|.. ++.....+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999865554444 3589999999988777655443 478999999999852 12211111 23458
Q ss_pred eEEEEcCCCccccCC--hHHHHHHH--HHhcCCCCcEEEEEeeCCHHHHHHHHhcCC--CCeEEEeccccccCCCceEEE
Q 009477 170 EYVVFDEADCLFGMG--FAEQLHKI--LGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAF 243 (534)
Q Consensus 170 ~~iViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~ 243 (534)
.+|||||||++++|| |...+..+ +....+..+++++|||+++.+...+...+. ++..+... ...+++ .|
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL--~y 657 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNL--WY 657 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccce--EE
Confidence 999999999999998 65555542 444445788999999999988775555443 33333221 122333 33
Q ss_pred EEechhh-HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEE
Q 009477 244 FTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (534)
Q Consensus 244 ~~~~~~~-k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~ 322 (534)
..+.... ....+..++... ..++.+||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|.+|+++||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred EEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 3333322 234555665543 23568999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 323 Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
|+++++|||+|+|++||+|++|.+.+.|+||+|||||.|.+|.|+.|++..|...+..+
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887655544
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.1e-47 Score=411.09 Aligned_cols=332 Identities=21% Similarity=0.334 Sum_probs=263.4
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 29 ~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
++++.....|++ .||..++|+|+++++.++.|+|+++.+|||||||++|++|++.. +..+||++|+++|+.
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMK 79 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHH
Confidence 444444555554 59999999999999999999999999999999999999998853 235899999999999
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC
Q 009477 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (534)
Q Consensus 108 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~ 183 (534)
|+.+.++.+ ++.+..+.++.....+...+ .+..+++++||+++...... ..+...++++|||||||+++++
T Consensus 80 dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 80 DQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccc
Confidence 998888775 47777887777666543322 24678999999998742211 2244567899999999999987
Q ss_pred C--hHHH---HHHHHHhcCCCCcEEEEEeeCCHHHHHHHHh--cCCCCeEEEeccccccCCCceEEEEEechhhHHHHHH
Q 009477 184 G--FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (534)
Q Consensus 184 ~--~~~~---~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (534)
| |... +..+...+ ++.+++++|||+++........ .+.+|....... ..+++ .+..+....+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcc--eeeeeeccchHHHHH
Confidence 7 4433 33444444 4688999999999876554333 344554433221 12222 233334444556666
Q ss_pred HHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCC
Q 009477 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (534)
Q Consensus 257 ~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~ 336 (534)
..+... .+.++||||+|+++++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 229 ~~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 229 RYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 766643 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 337 ~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
+||+||+|.+...|+||+||+||.|.+|.|+.|+++.|...+..+
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999987766554
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-46 Score=418.92 Aligned_cols=338 Identities=23% Similarity=0.298 Sum_probs=261.7
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
+.|++++|++.+++++++.||.+|+|+|.+|++. +++|+|++++||||||||++|.+|+++.+. .+.+++|++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----~~~kal~i~P 75 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----RGGKALYIVP 75 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----cCCcEEEEeC
Confidence 3689999999999999999999999999999997 778999999999999999999999999885 2567999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
+++|+.|+.+.+++++. .++++..++|+...... ....++|+|+||+++..++.+ ....++++++||+||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccC
Confidence 99999999999988764 47899999987654332 235689999999999888875 33457899999999999999
Q ss_pred cCChHHHHHHHHHhc---CCCCcEEEEEeeCCH--HHHHHHHhcCCC----CeEEEec--cccccCCCceEEEEEechhh
Q 009477 182 GMGFAEQLHKILGQL---SENRQTLLFSATLPS--ALAEFAKAGLRD----PHLVRLD--VDTKISPDLKLAFFTLRQEE 250 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~---~~~~q~ll~SAT~~~--~~~~~~~~~l~~----~~~i~~~--~~~~~~~~~~~~~~~~~~~~ 250 (534)
+.++...+..++..+ ..+.|++++|||+++ ++..+....... |..+... ............ .+....
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~--~~~~~~ 228 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQR--EVEVPS 228 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccc--cCCCcc
Confidence 888877776665544 567899999999975 333333321111 1111000 000000000000 011111
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcC------------------------------------CCce
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG------------------------------------LEPS 294 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~------------------------------------~~~~ 294 (534)
+ ......+...+..++++||||+|+.+++.++..|.... ..+.
T Consensus 229 ~-~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 229 K-DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred c-hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 1 22333344444568899999999999998887775421 3578
Q ss_pred eecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----cC-----CCCChhhhHHhhccCCCCCCc--
Q 009477 295 VCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-----FPPKPKIFVHRVGRAARAGRT-- 363 (534)
Q Consensus 295 ~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~~-----~p~s~~~~~qr~GR~gR~g~~-- 363 (534)
++|++|++.+|+.+++.|++|.++|||||+++++|+|+|..++||+ || .|.+..+|.||+|||||.|.+
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999997 66 588999999999999999875
Q ss_pred ceEEEEeccc
Q 009477 364 GTAFSFVTSE 373 (534)
Q Consensus 364 G~~i~~~~~~ 373 (534)
|.++.++...
T Consensus 388 G~~ii~~~~~ 397 (737)
T PRK02362 388 GEAVLLAKSY 397 (737)
T ss_pred ceEEEEecCc
Confidence 9999988765
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2e-45 Score=413.11 Aligned_cols=338 Identities=24% Similarity=0.299 Sum_probs=254.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CCCCeEEEEEcCcHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRALILSPTRDL 105 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~----~~~g~~~Lil~PtreL 105 (534)
|++.+.+.+.+ +|..|||+|++|+|.+++|+|+++.||||||||++|++|+++.+.... ...+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 799999999999999999999999999999999999999999886432 1346789999999999
Q ss_pred HHHHHHHHHH-------h----hccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC--CCCCeeE
Q 009477 106 ALQTLKFTKE-------L----GRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM--SLKSVEY 171 (534)
Q Consensus 106 a~Q~~~~~~~-------~----~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~--~l~~~~~ 171 (534)
+.|+.+.+.. + +... ++++...+|+....++.+.+...++|+|+||++|..++.. ..+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~-~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS-PKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC-hhHHHHHhcCCE
Confidence 9999875442 2 2233 7889999999988887777788999999999999877754 222 4789999
Q ss_pred EEEcCCCccccCChHHHHHH----HHHhcCCCCcEEEEEeeCCH--HHHHHHHhcCC--CCeEE-EeccccccCCCceEE
Q 009477 172 VVFDEADCLFGMGFAEQLHK----ILGQLSENRQTLLFSATLPS--ALAEFAKAGLR--DPHLV-RLDVDTKISPDLKLA 242 (534)
Q Consensus 172 iViDEah~l~~~~~~~~~~~----i~~~~~~~~q~ll~SAT~~~--~~~~~~~~~l~--~~~~i-~~~~~~~~~~~~~~~ 242 (534)
||+||+|.+.+..+...+.. +....+...|++++|||+++ .+..+...... .+..+ .+.... .......
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC--CccceEE
Confidence 99999999997665544333 33334467899999999976 33333322111 11111 111111 1111111
Q ss_pred EE-------EechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc------CCCceeecCCCCHHHHHHHH
Q 009477 243 FF-------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHV 309 (534)
Q Consensus 243 ~~-------~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~------~~~~~~l~g~~~~~~r~~~~ 309 (534)
.. ..........+...+.+.+..++++||||||+..++.++..|... +..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 11 111222334455556655566789999999999999999999873 46789999999999999999
Q ss_pred HHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCC-CcceEEEEec
Q 009477 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG-RTGTAFSFVT 371 (534)
Q Consensus 310 ~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g-~~G~~i~~~~ 371 (534)
+.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++.+..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999874 3344444443
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.8e-45 Score=405.98 Aligned_cols=322 Identities=21% Similarity=0.235 Sum_probs=259.7
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 29 ~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~------~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+...++.+.+ .||+ |||+|.+||+.++++ .|.+++|+||||||.+|+.|++..+.. |.+++||+|
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvP 508 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVP 508 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeC
Confidence 455666676655 5886 999999999999875 689999999999999999999987753 578999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH---HHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
|++||.|+++.++++....++++..++|+.+..++. ..+. +.++|+||||..+ . +.+.+++++++|+||+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecc
Confidence 999999999999988777889999999887654433 3333 3689999999432 2 4577899999999999
Q ss_pred CccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHH
Q 009477 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (534)
Q Consensus 178 h~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (534)
|++ .....+.+..++.+.|+++||||+.+........+..++..+....... ..+...+..... ..+..
T Consensus 583 hrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i~~ 651 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELVRE 651 (926)
T ss_pred ccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHHHH
Confidence 993 3445566777888899999999987766666666777777765543221 123333332221 22233
Q ss_pred HHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 258 ~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
.+...+..+++++|||+++++++.+++.|... ++++..+||+|++.+|+.++++|++|+.+|||||+++++|+|+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v 731 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA 731 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccC
Confidence 33334456899999999999999999999885 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-ChhhhHHhhccCCCCCCcceEEEEeccc
Q 009477 336 DNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 336 ~~VI~~~~p~-s~~~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
++||+++.|. +..+|.||+||+||.|+.|.|+.++.+.
T Consensus 732 ~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 732 NTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999864 6778999999999999999999998654
No 43
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-48 Score=351.17 Aligned_cols=332 Identities=30% Similarity=0.539 Sum_probs=289.3
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
+.+|.++-|.|++++++...||+.|+..|.+|||...-|-|+++.|..|.|||++|.+..++.+.... ....+|++|.
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~--g~vsvlvmch 118 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD--GQVSVLVMCH 118 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC--CeEEEEEEec
Confidence 56899999999999999999999999999999999999999999999999999999999999887542 2467999999
Q ss_pred cHHHHHHHHHHHHHhhcc-CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|||||-|+.+...+|+++ .+++++..+||.......+.+++-|+|+|+||||++.+..+ +.+++++++.+|+||||.|
T Consensus 119 trelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 119 TRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred cHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHH
Confidence 999999999999999988 48999999999999888888889999999999999998887 7899999999999999998
Q ss_pred cc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccccc-CCCceEEEEEechhhHHHHHHHH
Q 009477 181 FG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPDLKLAFFTLRQEEKHAALLYM 258 (534)
Q Consensus 181 ~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~k~~~L~~~ 258 (534)
++ .+...++.+|.+..|...|+++||||+++++....+.++.+|..+.++.+.+. ...+.+.|+.....+|...+..+
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 85 45788999999999999999999999999999999999999999988877654 34778888888888888888888
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+... .-.+++||+.+... +. | +.+ +|+|++..||+|+..++.|
T Consensus 278 Ld~L--eFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 278 LDVL--EFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhh--hhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCcccceee
Confidence 7754 46799999988654 00 3 223 8999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHH-HHHHHHHHhCCCccCCC
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA-YLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~-~~~~l~~~~~~~~~~~p 393 (534)
+|||+|.++.+|.||+|||||.|.+|.++.|++..+.. .+......+...+...|
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 99999999999999999999999999999999986543 34444444443333333
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.6e-46 Score=400.52 Aligned_cols=315 Identities=19% Similarity=0.224 Sum_probs=248.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE-EcCcHHHHHHHHHHHHHhhc
Q 009477 41 KGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI-LSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~-d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li-l~PtreLa~Q~~~~~~~~~~ 118 (534)
.||. |||||.+++|.++.|+ ++++.+|||||||.+|.++++.. ... ...++.|| ++|||||+.|+++.++++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--AKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--ccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 4998 9999999999999998 57788999999999776555532 111 22344555 77999999999999999887
Q ss_pred cC-----------------------CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-----------
Q 009477 119 YT-----------------------DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM----------- 164 (534)
Q Consensus 119 ~~-----------------------~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~----------- 164 (534)
.. ++++..++||.....++..+..+++|||||+ +++.+ +.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~s-r~L~~gYg~~~~~~ 162 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGS-RLLFSGYGCGFKSR 162 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcC-Cccccccccccccc
Confidence 54 4889999999999999999999999999995 44433 222
Q ss_pred -----CCCCeeEEEEcCCCccccCChHHHHHHHHHhc--CCC---CcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccc
Q 009477 165 -----SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN---RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234 (534)
Q Consensus 165 -----~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~--~~~---~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 234 (534)
.++++.++|+|||| ++++|...+..|++.+ +.. +|+++||||+|.++..+...++.++..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999964 432 69999999999988888888877776666544433
Q ss_pred cCCCceEEEEEechhhHHHHHHHHHHHh-cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHH-----HH
Q 009477 235 ISPDLKLAFFTLRQEEKHAALLYMIREH-ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK-----IH 308 (534)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~L~~~l~~~-~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~-----~~ 308 (534)
....+.+ ++.+....+...++..+... ...++++||||||++.++.+++.|...++ ..+||+|++.+|+ .+
T Consensus 241 ~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 241 AAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHH
Confidence 3334444 44445555554444443222 23567899999999999999999998877 8999999999999 78
Q ss_pred HHHHhc----CC-------cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcc-eEEEEecc
Q 009477 309 VSRFRA----RK-------TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG-TAFSFVTS 372 (534)
Q Consensus 309 ~~~F~~----g~-------~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G-~~i~~~~~ 372 (534)
+++|++ |+ ..||||||++++|+||+. ++||++..| .+.|+||+||+||+|+.| ..+.++..
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999987 44 689999999999999987 899997766 589999999999999864 33555533
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.9e-45 Score=399.41 Aligned_cols=324 Identities=23% Similarity=0.340 Sum_probs=261.8
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 37 AIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 37 ~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
.|++ .||.+++|+|+++|+.++.|+|+++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.++.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~ 75 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRA 75 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 3443 69999999999999999999999999999999999999998853 23589999999999999888887
Q ss_pred hhccCCCeEEEEEcCCCHHHHHHH----HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC--hHHH-
Q 009477 116 LGRYTDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQ- 188 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~----~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~--~~~~- 188 (534)
+ ++.+..+.++.+..+.... ..+..+|+++||+++...... ..+...++++|||||||+++++| |...
T Consensus 76 ~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 76 A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 5 4788888888776654432 235789999999998643221 23556789999999999999876 4443
Q ss_pred --HHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCC--CCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcC
Q 009477 189 --LHKILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264 (534)
Q Consensus 189 --~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~ 264 (534)
+..+...++ +.+++++|||+++.........+. ++..+... ...+++ .+.......+...+...+...
T Consensus 151 ~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl--~~~v~~~~~~~~~l~~~l~~~-- 222 (591)
T TIGR01389 151 QRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNL--RFSVVKKNNKQKFLLDYLKKH-- 222 (591)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCc--EEEEEeCCCHHHHHHHHHHhc--
Confidence 334445555 445999999999887765555443 44333211 112222 333344455677777777754
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p 344 (534)
.+.++||||+|+..++.+++.|...|+++..+||+|++.+|..+++.|.+|+++|||||+++++|+|+|++++||+|++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 345 ~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
.+...|.|++||+||.|..|.|+.++++.|...+..+
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999887665543
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-45 Score=408.80 Aligned_cols=338 Identities=22% Similarity=0.288 Sum_probs=264.6
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.|+++++++.+.+.++++||..|+|+|.++++. +++|+|++++||||||||++|.+|+++.+.. .+.++|+|+|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeCh
Confidence 689999999999999999999999999999986 7899999999999999999999999988764 25689999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
++|+.|+++.++.+. ..++++..++|+...... +..+++|+|+||+++..++.. ....++++++||+||+|.+.+
T Consensus 78 ~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 78 KALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCC
Confidence 999999999888875 458999999998764432 235789999999999887764 345588999999999999998
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCC---c-eEEEEEechh--hH-HHHH
Q 009477 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD---L-KLAFFTLRQE--EK-HAAL 255 (534)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~---~-~~~~~~~~~~--~k-~~~L 255 (534)
.++...+..++..++...|++++|||+++. ..++. +++..... ......+. + ...+...... .+ ....
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~---~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV---SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc---CCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 888999999999999999999999999753 34443 23322111 11111110 0 0011111111 11 1233
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc---------------------------------CCCceeecCCCCH
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE---------------------------------GLEPSVCYGDMDQ 302 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~---------------------------------~~~~~~l~g~~~~ 302 (534)
...+.+.+..++++||||+|++.++.++..|... ...+.++|++|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 3444444556789999999999998877655321 2347899999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE-------cCCCC-ChhhhHHhhccCCCCC--CcceEEEEecc
Q 009477 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------WDFPP-KPKIFVHRVGRAARAG--RTGTAFSFVTS 372 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~-------~~~p~-s~~~~~qr~GR~gR~g--~~G~~i~~~~~ 372 (534)
.+|..+.+.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.++.++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999993 55544 4568999999999975 56999999887
Q ss_pred ccH
Q 009477 373 EDM 375 (534)
Q Consensus 373 ~e~ 375 (534)
++.
T Consensus 388 ~~~ 390 (720)
T PRK00254 388 EEP 390 (720)
T ss_pred cch
Confidence 653
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.4e-44 Score=404.45 Aligned_cols=319 Identities=19% Similarity=0.191 Sum_probs=256.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 009477 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (534)
Q Consensus 31 ~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~------~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre 104 (534)
+.+..+...+.+| .||++|.+||+.++.+ .|++++|+||||||.+|+.+++..+. .|++++||+||++
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~e 660 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHH
Confidence 4455556677899 5999999999999987 79999999999999999988876653 4788999999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh----CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
||.|+++.+++.....++++..++|+.+..++...+. ++++|+||||+.+. ..+.+++++++|+||+|++
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEechhhc
Confidence 9999999998866666889999999888777665443 47899999997442 3567889999999999996
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (534)
|+ ...+.+..++.++|+++||||+++....++..++.++..+..+.... ..+...+...........+ .
T Consensus 735 ---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~i----l 803 (1147)
T PRK10689 735 ---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREAI----L 803 (1147)
T ss_pred ---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHHH----H
Confidence 33 23456677888999999999998887788888888888776544322 2333333332221111222 2
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
..+..+++++||||++..++.+++.|... +..+..+||+|++.+|+.++.+|++|+.+|||||+++++|+|+|++++|
T Consensus 804 ~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 804 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred HHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 22335789999999999999999999887 7889999999999999999999999999999999999999999999999
Q ss_pred EEcCC-CCChhhhHHhhccCCCCCCcceEEEEecc
Q 009477 339 INWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 339 I~~~~-p~s~~~~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
|..+. ..+...|.||+||+||.|+.|.|+.++.+
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 94432 23456799999999999999999988754
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.6e-43 Score=386.01 Aligned_cols=318 Identities=20% Similarity=0.253 Sum_probs=247.3
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 009477 32 PNVFRAI-KRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (534)
Q Consensus 32 ~~l~~~l-~~~g~~~~~~~Q~~ai~~il~~------~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre 104 (534)
..+.+.+ ...+|. ||++|++|++.+..+ .+.+++|+||||||.+|++|++..+. .|.+++|++||++
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~ 321 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEI 321 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHH
Confidence 4444444 556885 999999999999886 37999999999999999999998764 3788999999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH---HHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
||.|+++.++++....++++..++|+.+..+.. ..+. +.++|+||||+.+. ....++++++||+||+|++
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~------~~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ------DDVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc------ccchhcccceEEEechhhh
Confidence 999999999999888899999999998864433 3333 36999999998875 2356889999999999995
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (534)
. ......+......+++++||||+.+....+...+..++..+ +........+...+.. ..+...+...+.
T Consensus 396 g-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i--~~~p~~r~~i~~~~~~---~~~~~~~~~~i~ 465 (681)
T PRK10917 396 G-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVI--DELPPGRKPITTVVIP---DSRRDEVYERIR 465 (681)
T ss_pred h-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEE--ecCCCCCCCcEEEEeC---cccHHHHHHHHH
Confidence 2 23334444555678999999998765443333222233222 2211112223333222 233345556666
Q ss_pred HhcCCCCeEEEEEcCh--------hhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 261 EHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~--------~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
+.+..+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 6667789999999954 4456777777765 57899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-ChhhhHHhhccCCCCCCcceEEEEec
Q 009477 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 331 Dip~v~~VI~~~~p~-s~~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
|+|++++||+++.|. ....+.||+||+||.|..|.|+.++.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999986 56788999999999999999999995
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-42 Score=379.28 Aligned_cols=319 Identities=18% Similarity=0.234 Sum_probs=243.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 32 ~~l~~~l~~~g~~~~~~~Q~~ai~~il~~------~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
..+.+.+...+| +||++|++|++.|+.+ .+.+++|+||||||.+|++|++..+. .|.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----~g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----AGYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEECCHHHH
Confidence 344556677899 5999999999999875 25899999999999999999998765 36789999999999
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCCHHHH---HHHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 106 a~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~---~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
|.|+++.++++....++++..++|+.+..+. ...+. ++++|+|+||+.+. ....+.++++||+||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~------~~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ------EKVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh------ccccccccceEEEechhhcc
Confidence 9999999999988889999999999876653 33333 46899999999876 34668899999999999853
Q ss_pred cCChHHHHHHHHHhcC--CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLS--ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~--~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (534)
.. +...+..... ..+++++||||+.+........+..+...+ +........+...+ +... ....++..+
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i--~~~p~~r~~i~~~~--~~~~-~~~~~~~~i 441 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSII--DELPPGRKPITTVL--IKHD-EKDIVYEFI 441 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeee--ccCCCCCCceEEEE--eCcc-hHHHHHHHH
Confidence 21 1122222222 268899999998654333322211122111 11111111222222 2222 235566667
Q ss_pred HHhcCCCCeEEEEEcCh--------hhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccccc
Q 009477 260 REHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~--------~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~G 329 (534)
.+.+..+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 66667789999999875 4566777777653 6789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC-ChhhhHHhhccCCCCCCcceEEEEec
Q 009477 330 IDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 330 lDip~v~~VI~~~~p~-s~~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
+|+|++++||+++.|. +...|.||+||+||.|++|.|+.++.
T Consensus 522 vDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999886 57788999999999999999999983
No 50
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.9e-42 Score=369.96 Aligned_cols=312 Identities=16% Similarity=0.159 Sum_probs=237.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCChHHHH---------HHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 47 TPIQRKTMPLILSGADVVAMARTGSGKTAA---------FLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 47 ~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~---------~l~p~l~~l~~~~-~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
-.+|+++++.+++|+++|+.|+||||||.+ |+.|.+..+..-. ...+.+++|++|||+||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999997 4445555443211 123568999999999999999888765
Q ss_pred hcc---CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHH
Q 009477 117 GRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (534)
Q Consensus 117 ~~~---~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~ 193 (534)
..+ .+..+...+||... .+........+|+|+|++.. ...++++++||+||||++..++ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 433 46778899999873 22222234678999997621 2357899999999999988765 4455555
Q ss_pred HhcC-CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech---------hhHHHHHHHHHHHhc
Q 009477 194 GQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---------EEKHAALLYMIREHI 263 (534)
Q Consensus 194 ~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~k~~~L~~~l~~~~ 263 (534)
+..+ ..+|+++||||++.++..+ ..++.+|..+.+... ....+++.|..... ......+...+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 5443 3469999999999888776 578888888877532 23455666553321 111222334443322
Q ss_pred -CCCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHH-hcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 264 -SSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRF-RARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 264 -~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F-~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
..++++|||++++.+++.+++.|... ++.+..+||++++. ++.+++| ++|+.+||||||+|+||+|+|++++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 24578999999999999999999887 78999999999975 4667777 689999999999999999999999999
Q ss_pred EcC---CCC---------ChhhhHHhhccCCCCCCcceEEEEeccccH
Q 009477 340 NWD---FPP---------KPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (534)
Q Consensus 340 ~~~---~p~---------s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~ 375 (534)
++| .|. |...|+||+||+||. ++|.|+.+++.++.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 998 554 778999999999999 78999999998874
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.1e-42 Score=393.42 Aligned_cols=283 Identities=22% Similarity=0.322 Sum_probs=227.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|+ .||++|+.++|.++.|+|+++.||||||||+ |++|+...+.. .|.+++||+|||+|+.|+.+.++.++...
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 377 6999999999999999999999999999996 55566555543 37889999999999999999999999988
Q ss_pred CCeEEEEEcCCCH-----HHHHHHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-----------C
Q 009477 121 DLRISLLVGGDSM-----ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------M 183 (534)
Q Consensus 121 ~l~~~~~~gg~~~-----~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-----------~ 183 (534)
++.+..++|+... .++...+. +.++|+|+||++|.+++. .+....++++|+||||++++ +
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 8888888877542 23334444 469999999999999876 36677799999999999985 6
Q ss_pred ChH-HHHHHHHHhcCC------------------------CCcEEEEEeeCCHH-HHHHHHhcCCCCeEEEeccccccCC
Q 009477 184 GFA-EQLHKILGQLSE------------------------NRQTLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISP 237 (534)
Q Consensus 184 ~~~-~~~~~i~~~~~~------------------------~~q~ll~SAT~~~~-~~~~~~~~l~~~~~i~~~~~~~~~~ 237 (534)
||. +.+..++..++. .+|+++||||+++. +.. ..+.++..+.+........
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccC
Confidence 784 677777776654 68999999999864 332 1223333344444444455
Q ss_pred CceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhh---HHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 009477 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (534)
Q Consensus 238 ~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~---~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~ 314 (534)
++.+.|+.+. ++...|..++... +.++||||+|+.. ++.+++.|...|+++..+||++ ++.+++|++
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC
Confidence 6777777655 5667777777644 3589999999877 9999999999999999999999 234699999
Q ss_pred CCcEEEEE----eCcccccCCCCC-CCEEEEcCCCC
Q 009477 315 RKTMFLIV----TDVAARGIDIPL-LDNVINWDFPP 345 (534)
Q Consensus 315 g~~~iLI~----Tdv~a~GlDip~-v~~VI~~~~p~ 345 (534)
|+++|||| ||+++||||+|+ +++|||||+|.
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999 699999999999 89999999996
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-42 Score=383.00 Aligned_cols=334 Identities=19% Similarity=0.296 Sum_probs=254.6
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
..|++++|++.+++.+...||+ |+|+|.++++.+.++++++++||||||||+++.+++++.+.. +.++++++|+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~ 74 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPL 74 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEech
Confidence 3688999999999999999998 999999999999999999999999999999999999987753 4579999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
++|+.|+++.++++. ..++++...+|+...... ....++|+|+||+++..++.+ ....+.++++||+||+|.+.+
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHH-DPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhC-ChhHHhhcCEEEEecchhccC
Confidence 999999999888764 457888888887654332 225689999999999888765 334588999999999999988
Q ss_pred CChHHHHHHHHH---hcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEE-----Eechhh-HHH
Q 009477 183 MGFAEQLHKILG---QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-----TLRQEE-KHA 253 (534)
Q Consensus 183 ~~~~~~~~~i~~---~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~-k~~ 253 (534)
.++...+..++. ..+.+.|++++|||+++. .++++. +..+. +.. ..... .+..... ...... ...
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~-~~~--~~r~v-pl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL-IKS--NFRPV-PLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc-cCC--CCCCC-CeEEEEEecCeeeecccccccc
Confidence 777666666654 345678999999999753 444432 22111 111 11111 1111110 011111 111
Q ss_pred HHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcC-------------------------CCceeecCCCCHHHHHHH
Q 009477 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-------------------------LEPSVCYGDMDQDARKIH 308 (534)
Q Consensus 254 ~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~-------------------------~~~~~l~g~~~~~~r~~~ 308 (534)
.+..++.+....++++||||+|+..++.++..|.... ..+..+||+|++.+|..+
T Consensus 224 ~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 224 DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 2445555555678999999999999999998886531 236789999999999999
Q ss_pred HHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC---------CCChhhhHHhhccCCCCCC--cceEEEEecccc
Q 009477 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------PPKPKIFVHRVGRAARAGR--TGTAFSFVTSED 374 (534)
Q Consensus 309 ~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~---------p~s~~~~~qr~GR~gR~g~--~G~~i~~~~~~e 374 (534)
++.|++|.++|||||+++++|+|+|... ||..|. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999864 444443 4578899999999999985 577887766543
No 53
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=7.5e-41 Score=366.27 Aligned_cols=398 Identities=19% Similarity=0.194 Sum_probs=294.3
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~---~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
.||+.|+++++.+..+ +++++.|+||||||.+|+.++.+.+. .|.++|||+||++|+.|+.+.+++.. +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----~g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----QGKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 4899999999999874 78999999999999999988777664 36789999999999999999887642 5
Q ss_pred CeEEEEEcCCCHHHHHH----HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-----ChHHHHHHH
Q 009477 122 LRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----GFAEQLHKI 192 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~----~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-----~~~~~~~~i 192 (534)
..+..++|+.+..+..+ ...+.++|+|||+++++ .+++++++||+||+|+..-. .|..+-..+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 78899999877654433 33457899999999886 56889999999999986532 233333345
Q ss_pred HHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhh-------HHHHHHHHHHHhcCC
Q 009477 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-------KHAALLYMIREHISS 265 (534)
Q Consensus 193 ~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------k~~~L~~~l~~~~~~ 265 (534)
++....+.+++++|||++.+. +....-+....+.+..+...........+.+.... -...++..+++.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s--~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLES--LANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHH--HHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 556667899999999976543 44433344555555544322223334444443211 235678888888888
Q ss_pred CCeEEEEEcChh------------------------------------------------------------hHHHHHHH
Q 009477 266 DQQTLIFVSTKH------------------------------------------------------------HVEFLNVL 285 (534)
Q Consensus 266 ~~~~IVF~~t~~------------------------------------------------------------~~e~l~~~ 285 (534)
++++|||+|++. .++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 999999988521 34577777
Q ss_pred HHHc--CCCceeecCCCCH--HHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE--EcCCCCCh----------hh
Q 009477 286 FREE--GLEPSVCYGDMDQ--DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDFPPKP----------KI 349 (534)
Q Consensus 286 L~~~--~~~~~~l~g~~~~--~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI--~~~~p~s~----------~~ 349 (534)
|.+. +.++..+|+++.+ .+++.++++|++|+.+|||+|+++++|+|+|++++|+ ++|.+.+. ..
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 8775 7788999999864 5789999999999999999999999999999999984 66655443 45
Q ss_pred hHHhhccCCCCCCcceEEEEecc-----------ccHHHHHHHHHHhCCCccCCCChHHH------------HhhhhhHH
Q 009477 350 FVHRVGRAARAGRTGTAFSFVTS-----------EDMAYLLDLHLFLSKPIRAAPSEEEV------------LLDMDGVM 406 (534)
Q Consensus 350 ~~qr~GR~gR~g~~G~~i~~~~~-----------~e~~~~~~l~~~~~~~~~~~p~~~~~------------~~~~~~~~ 406 (534)
|+|++||+||+++.|.++..... +|+..|+.-|+..++.+.+||....+ ...+..+.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~ 605 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAKDEEKAEKFAQQLA 605 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecCCHHHHHHHHHHHH
Confidence 79999999999999999865542 35566788888889999999854332 22233333
Q ss_pred HHHHHHH-hcCCccccCCchhHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhh
Q 009477 407 SKIDQAI-ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYS 460 (534)
Q Consensus 407 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~ 460 (534)
..+.... ..+..++||.|+++.+..+.|+++++.+..+...+++........+.
T Consensus 606 ~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~~~~~~~~~~l~~~~~~~~ 660 (679)
T PRK05580 606 ALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKSPSRADLQKLLRAWLALLQ 660 (679)
T ss_pred HHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 3333322 22346899999999999999999988887666677776666555453
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-40 Score=366.65 Aligned_cols=309 Identities=19% Similarity=0.274 Sum_probs=243.0
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCCeEEEE
Q 009477 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRISLL 127 (534)
Q Consensus 49 ~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~~~~~~~l~~~~~ 127 (534)
+-.+.+..+.+++++|+.|+||||||++|.+++++... .+.+++|+.|||++|.|+++.+. .++...+..++..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 33456677777899999999999999999999998752 24589999999999999999774 5666667778877
Q ss_pred EcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC-ccccCChHHH-HHHHHHhcCCCCcEEEE
Q 009477 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSENRQTLLF 205 (534)
Q Consensus 128 ~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah-~l~~~~~~~~-~~~i~~~~~~~~q~ll~ 205 (534)
+++.+. ...+++|+|+|||+|++.+.. ...++++++|||||+| ++++.++... +..+...++++.|+++|
T Consensus 81 vr~~~~------~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGENK------VSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred Eccccc------cCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 776542 245689999999999999875 4679999999999999 5777766443 34566667888999999
Q ss_pred EeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHH-HHHHHHHHhc-CCCCeEEEEEcChhhHHHHH
Q 009477 206 SATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHI-SSDQQTLIFVSTKHHVEFLN 283 (534)
Q Consensus 206 SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~ 283 (534)
|||++... ...++.++..+...... ..+++.|......++.. .+...+...+ ...+++|||++++.+++.++
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 99998763 34566666666544322 23556666554444321 1222222221 13688999999999999999
Q ss_pred HHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCC--------------
Q 009477 284 VLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK-------------- 346 (534)
Q Consensus 284 ~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s-------------- 346 (534)
+.|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||+|++||++++|..
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 306 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLET 306 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeE
Confidence 99987 4788999999999999999999999999999999999999999999999999998742
Q ss_pred ----hhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 347 ----PKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 347 ----~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
...|.||.||+||. ++|.||.+++..+...
T Consensus 307 ~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 307 VRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred EEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 23489999999999 7899999999876543
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1e-40 Score=380.56 Aligned_cols=323 Identities=22% Similarity=0.285 Sum_probs=234.2
Q ss_pred EEcCCCChHHHHHHHHHHHHhhhcC--------CCCCeEEEEEcCcHHHHHHHHHHHHH----h-------h-ccCCCeE
Q 009477 65 AMARTGSGKTAAFLVPMLQRLNQHV--------PQGGVRALILSPTRDLALQTLKFTKE----L-------G-RYTDLRI 124 (534)
Q Consensus 65 ~~a~TGsGKT~~~l~p~l~~l~~~~--------~~~g~~~Lil~PtreLa~Q~~~~~~~----~-------~-~~~~l~~ 124 (534)
++||||||||++|++|+++++.... ...+.++|||+|+++|+.|+.+.++. + + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4799999999999999999987542 12467999999999999999988764 2 1 1357899
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC----hHHHHHHHHHhcCCCC
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG----FAEQLHKILGQLSENR 200 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~----~~~~~~~i~~~~~~~~ 200 (534)
...+|+.+..++.+.+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+.. +...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999999998888777788999999999999988765323468999999999999999753 3345555555667789
Q ss_pred cEEEEEeeCCHHHHHHHHhcCC-CCeEEEeccccccCCCceEEEEEechhh--------------------HHHHHHHHH
Q 009477 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLRQEE--------------------KHAALLYMI 259 (534)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------------k~~~L~~~l 259 (534)
|+|++|||+++. .++++.... ++..+. .........+... +.+.... ....+...+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVV-NPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEE-CCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 555543332 344332 2222112222221 1111100 001111112
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcC---------------------------------CCceeecCCCCHHHHH
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEG---------------------------------LEPSVCYGDMDQDARK 306 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~---------------------------------~~~~~l~g~~~~~~r~ 306 (534)
...+..+.++||||||+..+|.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2223356899999999999999999887531 1146789999999999
Q ss_pred HHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHH----HHH
Q 009477 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL----DLH 382 (534)
Q Consensus 307 ~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~----~l~ 382 (534)
.+++.|++|++++||||+.+++|||++.+++||+++.|.+..+|+||+||+||. ..|.+..++.+.+...+. -++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 234433334443333222 245
Q ss_pred HHhCCCccC
Q 009477 383 LFLSKPIRA 391 (534)
Q Consensus 383 ~~~~~~~~~ 391 (534)
..+...+..
T Consensus 397 ~~l~g~iE~ 405 (1490)
T PRK09751 397 CMFAGRLEN 405 (1490)
T ss_pred HHhcCCCCc
Confidence 556555443
No 56
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=357.52 Aligned_cols=338 Identities=28% Similarity=0.342 Sum_probs=269.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCCCeEEEEEcCcHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALILSPTRDLA 106 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~---~~~g~~~Lil~PtreLa 106 (534)
|++.+.+.++++ |..|||.|.+|||.|.+|+++++.||||||||+++++|++..+.+.. ...|..+|+|+|-++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999998 99999999999999999999999999999999999999999998762 34578999999999999
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC-CCCCCeeEEEEcCCCccccCCh
Q 009477 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGF 185 (534)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-~~l~~~~~iViDEah~l~~~~~ 185 (534)
..+...++..++..|+.+..-+|+....+..+...+.|+|+|+||+.|.-++...+. -.|.++.+||+||.|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999998888877778888999999999999877654111 2388999999999999986544
Q ss_pred HHHHH----HHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCC--C-eEEEeccccccCCCceEEEEEec---hhhHHHHH
Q 009477 186 AEQLH----KILGQLSENRQTLLFSATLPSALAEFAKAGLRD--P-HLVRLDVDTKISPDLKLAFFTLR---QEEKHAAL 255 (534)
Q Consensus 186 ~~~~~----~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~--~-~~i~~~~~~~~~~~~~~~~~~~~---~~~k~~~L 255 (534)
..++. .+....+ ..|.+++|||..+. ...++...+. + .++.+... ...++........ ...-...+
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~--k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA--KKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC--CcceEEEEecCCccccccchhHHH
Confidence 33333 3323333 89999999998643 3344433333 2 33333222 2222222111111 01223445
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcC-CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~-~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~ 334 (534)
...+.+.+.+...+|||+||+..+|.++..|...+ ..+..+||+++.+.|..+.++|++|+.+++|||..++-|||+..
T Consensus 243 ~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~ 322 (814)
T COG1201 243 YERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGD 322 (814)
T ss_pred HHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCC
Confidence 55555555566799999999999999999999886 88899999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCC-CCcceEEEEecc
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVTS 372 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~-g~~G~~i~~~~~ 372 (534)
++.||+++.|.+...++||+||+|+. |....++.+...
T Consensus 323 vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 323 IDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999964 554566656555
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.4e-40 Score=364.55 Aligned_cols=307 Identities=18% Similarity=0.241 Sum_probs=241.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCCeEEEEE
Q 009477 50 QRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRISLLV 128 (534)
Q Consensus 50 Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~~~~~~~l~~~~~~ 128 (534)
-.+.+..+.+++++++.|+||||||++|.+|+++.... +.+++|+.|||++|.|+++.+. .++...+..++..+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 34556677788999999999999999999999876421 2379999999999999999774 56767788888888
Q ss_pred cCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc-cccCCh-HHHHHHHHHhcCCCCcEEEEE
Q 009477 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGF-AEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 129 gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~-l~~~~~-~~~~~~i~~~~~~~~q~ll~S 206 (534)
++.+.. ...+.|+|+|||+|++++.. ...++++++|||||+|+ .++.++ ...+.+++..++++.|+++||
T Consensus 85 r~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 85 RAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred cCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 876532 24578999999999998875 46799999999999996 455443 233455667778889999999
Q ss_pred eeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHH-HHHHHHHHhc-CCCCeEEEEEcChhhHHHHHH
Q 009477 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHI-SSDQQTLIFVSTKHHVEFLNV 284 (534)
Q Consensus 207 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~~ 284 (534)
||++.. .+ ..++.++..+..... ...+.+.|..+....+.. .+...+...+ ...+.+|||++++.+++.+++
T Consensus 157 ATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 157 ATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred cCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHH
Confidence 999875 23 456666655554432 123566666665544443 2222222222 236899999999999999999
Q ss_pred HHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCC---------------
Q 009477 285 LFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK--------------- 346 (534)
Q Consensus 285 ~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s--------------- 346 (534)
.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||+|++||+++++..
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 5788899999999999999999999999999999999999999999999999887642
Q ss_pred ---hhhhHHhhccCCCCCCcceEEEEeccccHH
Q 009477 347 ---PKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (534)
Q Consensus 347 ---~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~ 376 (534)
...|.||+||+||. .+|.||.+++..++.
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 35799999999998 689999999987653
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.8e-40 Score=349.16 Aligned_cols=320 Identities=21% Similarity=0.205 Sum_probs=253.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |+|+|..++|.++.|+ |+.+.||+|||++|.+|++.... .|++++|++||++||.|.++++..+.++.
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 4666 9999999999999998 99999999999999999998754 36789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcC------------------------CCCCCCeeEEEEc
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE------------------------DMSLKSVEYVVFD 175 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~------------------------~~~l~~~~~iViD 175 (534)
++++++++||.+. +.+....+++|+|||.+.| ++++...- ..-...+.+.|+|
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999764 3445567899999999888 66655320 0113457899999
Q ss_pred CCCccc-c--------------C---ChHHHHHHHHHhc--------------------------------C--------
Q 009477 176 EADCLF-G--------------M---GFAEQLHKILGQL--------------------------------S-------- 197 (534)
Q Consensus 176 Eah~l~-~--------------~---~~~~~~~~i~~~~--------------------------------~-------- 197 (534)
|+|.++ + . .+......+...+ +
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999765 0 0 0111111111100 0
Q ss_pred ---------------------------------------C--------------------------------------CC
Q 009477 198 ---------------------------------------E--------------------------------------NR 200 (534)
Q Consensus 198 ---------------------------------------~--------------------------------------~~ 200 (534)
+ -.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 01
Q ss_pred cEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHH
Q 009477 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVE 280 (534)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e 280 (534)
++.+||||.+....++...|.-++..+.... .........++.+...+|...|...+......+.++||||+|+..++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 4679999999888888888887765554333 22323334456677788999999999876556788999999999999
Q ss_pred HHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCC---CCC-----EEEEcCCCCChhhhHH
Q 009477 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVH 352 (534)
Q Consensus 281 ~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip---~v~-----~VI~~~~p~s~~~~~q 352 (534)
.++..|...|+++..+||+++ +|+..+..|..+...|+||||+++||+||+ ++. +||++++|.+...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 999999999999999999855 555555666666667999999999999999 565 9999999999999999
Q ss_pred hhccCCCCCCcceEEEEecccc
Q 009477 353 RVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 353 r~GR~gR~g~~G~~i~~~~~~e 374 (534)
|+||+||.|.+|.+++|++.+|
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999865
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=7.7e-40 Score=373.02 Aligned_cols=290 Identities=20% Similarity=0.276 Sum_probs=223.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 009477 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 34 l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
+.+-..+.....||++|+.++|.++.|+|+++.||||||||+ |.+|+...+.. .|++++||+|||+|+.|+.+.+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHHH
Confidence 333444433346999999999999999999999999999997 66777766543 3688999999999999999999
Q ss_pred HHhhccCCCeEE---EEEcCCCHHHHHH---HHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc----
Q 009477 114 KELGRYTDLRIS---LLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG---- 182 (534)
Q Consensus 114 ~~~~~~~~l~~~---~~~gg~~~~~~~~---~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~---- 182 (534)
+.++...++.+. .++||.+..++.. .+. ++++|+|+||++|.+++.. +.. +++++|+||||++++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~-~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP-KFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC-CCCEEEEeChHhhhhcccc
Confidence 999987776543 4678887765433 333 3599999999999988765 222 899999999999997
Q ss_pred -------CChHHH-HHHH----------------------HHhcCCCCc--EEEEEee-CCHHHHHHHHhcCCCCeEEEe
Q 009477 183 -------MGFAEQ-LHKI----------------------LGQLSENRQ--TLLFSAT-LPSALAEFAKAGLRDPHLVRL 229 (534)
Q Consensus 183 -------~~~~~~-~~~i----------------------~~~~~~~~q--~ll~SAT-~~~~~~~~~~~~l~~~~~i~~ 229 (534)
+||..+ +..+ ++.++..+| +++|||| +|..+.. ..+.++..+.+
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v 294 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEV 294 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEe
Confidence 678654 3443 234455566 5679999 5655432 22344444555
Q ss_pred ccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcCh---hhHHHHHHHHHHcCCCceeecCCCCHHHHH
Q 009477 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK---HHVEFLNVLFREEGLEPSVCYGDMDQDARK 306 (534)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~---~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~ 306 (534)
........++.+.+..... +...|..+++.. +.++||||+|+ +.++.+++.|...|+++..+||++++
T Consensus 295 ~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred cCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 5544445567777665443 245667777653 46899999999 99999999999999999999999974
Q ss_pred HHHHHHhcCCcEEEEE----eCcccccCCCCC-CCEEEEcCCC
Q 009477 307 IHVSRFRARKTMFLIV----TDVAARGIDIPL-LDNVINWDFP 344 (534)
Q Consensus 307 ~~~~~F~~g~~~iLI~----Tdv~a~GlDip~-v~~VI~~~~p 344 (534)
.++++|++|+++|||| ||+++||||+|+ +++|||||+|
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 6799999999999999 499999999999 8999999987
No 60
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.9e-40 Score=380.54 Aligned_cols=324 Identities=19% Similarity=0.245 Sum_probs=255.0
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 009477 33 NVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (534)
Q Consensus 33 ~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~ 111 (534)
++.+-+++ .|| .||++|++++|.+++|+|+++.||||||||++++++.+.... .|.++|||+||++|+.|+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----KGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----cCCeEEEEECHHHHHHHHHH
Confidence 44455555 799 599999999999999999999999999999966665554321 46789999999999999999
Q ss_pred HHHHhhccC--CCeEEEEEcCCCHHHHHH---HHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc---
Q 009477 112 FTKELGRYT--DLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG--- 182 (534)
Q Consensus 112 ~~~~~~~~~--~l~~~~~~gg~~~~~~~~---~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~--- 182 (534)
.++.++... ++++..++|+.+..++.. .+. +.++|+|+||++|.+.+.. +...++++||+||||++++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~---l~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE---MKHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH---HhhCCCCEEEEECceecccccc
Confidence 999998765 467788889988776543 333 3599999999999987664 2237799999999999986
Q ss_pred --------CChHHHHHH----HHH----------------------hcCCCCc-EEEEEeeCCHH--HHHHHHhcCCCCe
Q 009477 183 --------MGFAEQLHK----ILG----------------------QLSENRQ-TLLFSATLPSA--LAEFAKAGLRDPH 225 (534)
Q Consensus 183 --------~~~~~~~~~----i~~----------------------~~~~~~q-~ll~SAT~~~~--~~~~~~~~l~~~~ 225 (534)
+||..++.. ++. .++..+| ++++|||+++. ... .+.++.
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~----l~~~~l 293 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVK----LYRELL 293 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHH----HhhcCe
Confidence 588777754 332 2345566 57799999853 333 335566
Q ss_pred EEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhh---HHHHHHHHHHcCCCceeecCCCCH
Q 009477 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQ 302 (534)
Q Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~---~e~l~~~L~~~~~~~~~l~g~~~~ 302 (534)
.+.+........++.+.|+.+....+ ..|..++... +.++||||+|++. ++.+++.|...|+++..+||+
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66666666566678888877665555 5677777654 4689999999875 589999999999999999985
Q ss_pred HHHHHHHHHHhcCCcEEEEEe----CcccccCCCCC-CCEEEEcCCCC---ChhhhHHhh-------------ccCCCCC
Q 009477 303 DARKIHVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFPP---KPKIFVHRV-------------GRAARAG 361 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~T----dv~a~GlDip~-v~~VI~~~~p~---s~~~~~qr~-------------GR~gR~g 361 (534)
|..++++|++|+++||||| ++++||||+|+ +++|||||+|. +.+.|.|.. ||+||.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 59999999998 99999999999 888776655 9999999
Q ss_pred CcceEEEEeccccHHHH
Q 009477 362 RTGTAFSFVTSEDMAYL 378 (534)
Q Consensus 362 ~~G~~i~~~~~~e~~~~ 378 (534)
.++.++......+...+
T Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred CcchhHHHhHHHHHHHH
Confidence 88777655555554443
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-38 Score=315.58 Aligned_cols=330 Identities=24% Similarity=0.330 Sum_probs=249.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
+..+++.+|.......+.+ ++++..|||-|||+++.+-+..++... .| ++|+|+||+.|+.|.+..+.++.....
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---GG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---CC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3457899999988877766 999999999999999998888887765 34 799999999999999999999887777
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCc
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q 201 (534)
-.++.++|..+.++....| ...+|+|+||..+.+-+.. +.+++.++.++|||||||....--...+.+-+.....++.
T Consensus 87 ~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred hheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 7888999988777665554 5579999999999888876 6799999999999999997755433344444444456778
Q ss_pred EEEEEeeCCHHHHHHHH---hcCCCCeEEEeccccccC---CCceEEEEEech---------------------------
Q 009477 202 TLLFSATLPSALAEFAK---AGLRDPHLVRLDVDTKIS---PDLKLAFFTLRQ--------------------------- 248 (534)
Q Consensus 202 ~ll~SAT~~~~~~~~~~---~~l~~~~~i~~~~~~~~~---~~~~~~~~~~~~--------------------------- 248 (534)
++++||||..+.+.+.. ...-+...++...+.... ...+..++.+.-
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999654433322 111111111111000000 001111111110
Q ss_pred --------------------------------------------------------------------------------
Q 009477 249 -------------------------------------------------------------------------------- 248 (534)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (534)
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence
Q ss_pred ----------------------hhHHHHHHHHHHHhc--CCCCeEEEEEcChhhHHHHHHHHHHcCCCce-eec------
Q 009477 249 ----------------------EEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCY------ 297 (534)
Q Consensus 249 ----------------------~~k~~~L~~~l~~~~--~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~-~l~------ 297 (534)
..|...+..++++.+ ..+.++|||++.++.++.+...|...+..+. .+.
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 003344445555544 4567999999999999999999999988774 333
Q ss_pred --CCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc--
Q 009477 298 --GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-- 373 (534)
Q Consensus 298 --g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~-- 373 (534)
.+|+|.++.+++++|++|+++|||||+++++|+|+|.+|.||.|++-+|+..++||.|||||. ++|.++.+++.+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 369999999999999999999999999999999999999999999999999999999999996 889999999987
Q ss_pred cHHHHH
Q 009477 374 DMAYLL 379 (534)
Q Consensus 374 e~~~~~ 379 (534)
|..|++
T Consensus 484 deayy~ 489 (542)
T COG1111 484 DEAYYY 489 (542)
T ss_pred HHHHHH
Confidence 444443
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.8e-38 Score=340.65 Aligned_cols=322 Identities=20% Similarity=0.238 Sum_probs=249.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |+++|..+.+.+..|+ |+.+.||+|||++|++|++.... .|++++|++||++||.|.++++..+.+..
T Consensus 75 ~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4774 9999999999888886 99999999999999999986544 36789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-c----------C
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------M 183 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~----------~ 183 (534)
|++++++.||.+...+.+ ....++|++|||++| ++++... ....+..+.++|+||+|.++ + .
T Consensus 147 Gl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred CCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 999999999988433333 335799999999999 6655541 11346788999999999876 0 0
Q ss_pred -----ChHHHHHHHHHhcCCC-----------------------------------------------------------
Q 009477 184 -----GFAEQLHKILGQLSEN----------------------------------------------------------- 199 (534)
Q Consensus 184 -----~~~~~~~~i~~~~~~~----------------------------------------------------------- 199 (534)
.+......+...+...
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 1111111222111000
Q ss_pred ----------------------------------------------------------CcEEEEEeeCCHHHHHHHHhcC
Q 009477 200 ----------------------------------------------------------RQTLLFSATLPSALAEFAKAGL 221 (534)
Q Consensus 200 ----------------------------------------------------------~q~ll~SAT~~~~~~~~~~~~l 221 (534)
.++.+||+|...+-.++...|-
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 1356777776555555655543
Q ss_pred CCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCC
Q 009477 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (534)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~ 301 (534)
- ..+.++...+....-....+.+...+|..++...+......+.++||||+|+..++.++..|...|+++..+||++.
T Consensus 386 l--~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 M--EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred C--cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 2 33444433221111111233456678999999999876567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCcccccCCC---CCCC-----EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc
Q 009477 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDI---PLLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 302 ~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDi---p~v~-----~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
+.++..+...++.| .|+|||++++||+|| |.+. +||++++|.+...|.||+||+||+|.+|.++.|++.+
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 98888887777766 699999999999999 6898 9999999999999999999999999999999999976
Q ss_pred cH
Q 009477 374 DM 375 (534)
Q Consensus 374 e~ 375 (534)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 53
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.9e-39 Score=344.47 Aligned_cols=303 Identities=16% Similarity=0.165 Sum_probs=225.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
...|+++|+++++.++.+++.++.+|||||||.++...+. .+... ...++|||+||++|+.||.+.+++++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 3479999999999999999999999999999997654322 22222 1237999999999999999999998765555
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcE
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 202 (534)
.+..+.+|.... ...+|+|+||+++.+... ..++++++||+||||++... .+..++..++..+++
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~ 252 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFK 252 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhccceE
Confidence 566666665432 357899999999976542 23678999999999998764 355677777778899
Q ss_pred EEEEeeCCHHHHHHH-HhcCCCCeEEEeccccccC----CCceEEEE-----------------------EechhhHHHH
Q 009477 203 LLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKIS----PDLKLAFF-----------------------TLRQEEKHAA 254 (534)
Q Consensus 203 ll~SAT~~~~~~~~~-~~~l~~~~~i~~~~~~~~~----~~~~~~~~-----------------------~~~~~~k~~~ 254 (534)
++||||+++...... -..+..|....+....... ..+....+ .+....+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999965321111 0111112222221111000 00000000 1112233444
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-CcccccCCCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIP 333 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-dv~a~GlDip 333 (534)
+..++......+.+++|||++.+|++.+++.|...|.++..+||++++.+|..+++.|++|+..||||| +++++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 555555544567889999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCEEEEcCCCCChhhhHHhhccCCCCCCcc
Q 009477 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364 (534)
Q Consensus 334 ~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G 364 (534)
++++||+++++.+...|+||+||++|.+..+
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999999987644
No 64
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.3e-39 Score=340.63 Aligned_cols=375 Identities=18% Similarity=0.215 Sum_probs=270.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHH----HHH
Q 009477 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ----FEE 139 (534)
Q Consensus 64 i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~----~~~ 139 (534)
++.|+||||||.+|+..+.+.+. .|.++||++|+++|+.|+.+.+++.. +..+..++|+.+..+. ...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHH
Confidence 47899999999999866554433 36789999999999999999887642 4678888887765543 233
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-----CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-----~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~ 214 (534)
..+..+|+|||++.++ .++.++++|||||+|+..- +.|..+-..++.....+.+++++|||++.+
T Consensus 73 ~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle-- 142 (505)
T TIGR00595 73 KNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE-- 142 (505)
T ss_pred HcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH--
Confidence 3356899999999886 5688999999999998762 224444344555555789999999996644
Q ss_pred HHHHhcCCCCeEEEeccccccCCCceEEEEEechhh----HHHHHHHHHHHhcCCCCeEEEEEcChhh------------
Q 009477 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE----KHAALLYMIREHISSDQQTLIFVSTKHH------------ 278 (534)
Q Consensus 215 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----k~~~L~~~l~~~~~~~~~~IVF~~t~~~------------ 278 (534)
.+....-+....+.+.............++.+.... -...|++.+++.+..++++|||+|++..
T Consensus 143 s~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 143 SYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 444443344444444433322233344444443322 2356888888888899999999886532
Q ss_pred ------------------------------------------------HHHHHHHHHHc--CCCceeecCCCCHHHH--H
Q 009477 279 ------------------------------------------------VEFLNVLFREE--GLEPSVCYGDMDQDAR--K 306 (534)
Q Consensus 279 ------------------------------------------------~e~l~~~L~~~--~~~~~~l~g~~~~~~r--~ 306 (534)
++.+.+.|.+. +.++..+|+++.+..+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 47778888776 6788999999887655 8
Q ss_pred HHHHHHhcCCcEEEEEeCcccccCCCCCCCEE--EEcCCCCC----------hhhhHHhhccCCCCCCcceEEEEe-ccc
Q 009477 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNV--INWDFPPK----------PKIFVHRVGRAARAGRTGTAFSFV-TSE 373 (534)
Q Consensus 307 ~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V--I~~~~p~s----------~~~~~qr~GR~gR~g~~G~~i~~~-~~~ 373 (534)
.+++.|++|+.+|||+|+++++|+|+|++++| +++|...+ ...|+|++||+||+++.|.++... .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 99999999999999999999999999999987 47775332 345799999999999999988443 332
Q ss_pred ----------cHHHHHHHHHHhCCCccCCCCh------------HHHHhhhhhHHHHHHHHHhcCCccccCCchhHHHHH
Q 009477 374 ----------DMAYLLDLHLFLSKPIRAAPSE------------EEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (534)
Q Consensus 374 ----------e~~~~~~l~~~~~~~~~~~p~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 431 (534)
|+..|+.-|+..++.+.+||.. +.+...+..+...+.+....+..++||.|+++.+..
T Consensus 383 ~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lgP~~~~~~k~~ 462 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIA 462 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcEEeCCccccchhhc
Confidence 4455677777777888888832 223333334444444433334568999999999999
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHH
Q 009477 432 SDRVREIIDSSADLNSLQRTCTNAF 456 (534)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~~~~~~ 456 (534)
+.|+++++.++.+...+++.+....
T Consensus 463 ~~~r~~~l~k~~~~~~~~~~l~~~~ 487 (505)
T TIGR00595 463 GRYRYQILLKSKSFLVLQKLVNKTL 487 (505)
T ss_pred CeeEEEEEEEcCCHHHHHHHHHHHH
Confidence 9999998888776667776665544
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.9e-37 Score=332.87 Aligned_cols=320 Identities=21% Similarity=0.205 Sum_probs=239.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (534)
++|+|.+++..+..++..|+.++||+|||++|++|++..... |+.++|++|+++||.|+++++..+.++.|++++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 344455555544445557999999999999999998766543 556999999999999999999999999999999
Q ss_pred EEEcCCC---HHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccccC-------------
Q 009477 126 LLVGGDS---MESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM------------- 183 (534)
Q Consensus 126 ~~~gg~~---~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~~~------------- 183 (534)
+++++.. ...+.+....+++|++|||++| ++.+... ....+..+.++|+||||.++-.
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~ 223 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPR 223 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCc
Confidence 8887632 3333344446899999999999 6665431 2244678999999999987510
Q ss_pred ---ChHHHHHHHHHhcCC--------------------------------------------------------------
Q 009477 184 ---GFAEQLHKILGQLSE-------------------------------------------------------------- 198 (534)
Q Consensus 184 ---~~~~~~~~i~~~~~~-------------------------------------------------------------- 198 (534)
........+...+.+
T Consensus 224 ~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 224 VQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred cchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 011111112211110
Q ss_pred -------------------------------------------------------CCcEEEEEeeCCHHHHHHHHhcCCC
Q 009477 199 -------------------------------------------------------NRQTLLFSATLPSALAEFAKAGLRD 223 (534)
Q Consensus 199 -------------------------------------------------------~~q~ll~SAT~~~~~~~~~~~~l~~ 223 (534)
-.++.+||+|...+-.+|...|-
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~-- 381 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYS-- 381 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhC--
Confidence 01456777776555566665442
Q ss_pred CeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHH
Q 009477 224 PHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303 (534)
Q Consensus 224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~ 303 (534)
-..+.++...+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+||++++.
T Consensus 382 l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~ 461 (762)
T TIGR03714 382 LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAK 461 (762)
T ss_pred CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHH
Confidence 23344433322211111123455677899999999988767889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCcccccCCCC---------CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIP---------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 304 ~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip---------~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
++..+...++.| .|+|||++++||+||| ++.+|+++++|....+ .||+||+||+|.+|.++.|++.+|
T Consensus 462 E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 462 EAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred HHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 888887777666 6999999999999999 9999999999987666 999999999999999999999876
Q ss_pred H
Q 009477 375 M 375 (534)
Q Consensus 375 ~ 375 (534)
.
T Consensus 539 ~ 539 (762)
T TIGR03714 539 D 539 (762)
T ss_pred h
Confidence 3
No 66
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=6.8e-40 Score=318.38 Aligned_cols=285 Identities=30% Similarity=0.470 Sum_probs=230.3
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcc---CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCee
Q 009477 94 VRALILSPTRDLALQTLKFTKELGRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (534)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~---~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~ 170 (534)
+.++|+-|+|||+.|+.+.+++|-.. ..++...+.||.....|...+..+.+|+|+||+|+.+.+.. ..+.+....
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 67999999999999999977777544 35677789999999999999999999999999999999986 567889999
Q ss_pred EEEEcCCCccccCChHHHHHHHHHhcCC------CCcEEEEEeeCCH-HHHHHHHhcCCCCeEEEeccccccCCCceEEE
Q 009477 171 YVVFDEADCLFGMGFAEQLHKILGQLSE------NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (534)
Q Consensus 171 ~iViDEah~l~~~~~~~~~~~i~~~~~~------~~q~ll~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 243 (534)
++|+||+|-++..++.+.+..+..++|. ..|.++.|||+.. ++.......|.-|..+.+..+...+..+-+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999998888888777763 4689999999843 23344555666777777766655544444333
Q ss_pred EEechh-h-HHHHH-------------------------------------HHHHHHhcCCCCeEEEEEcChhhHHHHHH
Q 009477 244 FTLRQE-E-KHAAL-------------------------------------LYMIREHISSDQQTLIFVSTKHHVEFLNV 284 (534)
Q Consensus 244 ~~~~~~-~-k~~~L-------------------------------------~~~l~~~~~~~~~~IVF~~t~~~~e~l~~ 284 (534)
..+.+. + ....| +..++++ ...+.||||.|+.+++.+.+
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHHH
Confidence 332221 0 01111 1222222 35689999999999999999
Q ss_pred HHHHcC---CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCC
Q 009477 285 LFREEG---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (534)
Q Consensus 285 ~L~~~~---~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g 361 (534)
++.+.| +.|.++||+..+++|+..++.|.+++++.|||||+++||+||.++..+||..+|.+...|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999874 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccccHHHHHHH
Q 009477 362 RTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 362 ~~G~~i~~~~~~e~~~~~~l 381 (534)
+-|.+|+++........+..
T Consensus 604 rmglaislvat~~ekvwyh~ 623 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHW 623 (725)
T ss_pred hcceeEEEeeccchheeehh
Confidence 99999999976544444433
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5e-37 Score=327.66 Aligned_cols=321 Identities=23% Similarity=0.275 Sum_probs=250.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |+++|..+.+.+..|+ |+.++||+|||++|.+|++-.... |.+++|++||++||.|.++++..+.++.
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 4766 9999999999888776 999999999999999999643332 5569999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcC-----CCCCCCeeEEEEcCCCccccC---------C-
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFGM---------G- 184 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~l~~~~~iViDEah~l~~~---------~- 184 (534)
++++++++||.+...+... ..++|+||||++| ++++...- ...+..+.++|+||+|+++-. |
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999886554433 4689999999999 88887531 246789999999999987610 0
Q ss_pred ------hHHHHHHHHHhcCC------------------------------------------------------------
Q 009477 185 ------FAEQLHKILGQLSE------------------------------------------------------------ 198 (534)
Q Consensus 185 ------~~~~~~~i~~~~~~------------------------------------------------------------ 198 (534)
.......+.+.+..
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 00011111111100
Q ss_pred ---------------------------------------------------------CCcEEEEEeeCCHHHHHHHHhcC
Q 009477 199 ---------------------------------------------------------NRQTLLFSATLPSALAEFAKAGL 221 (534)
Q Consensus 199 ---------------------------------------------------------~~q~ll~SAT~~~~~~~~~~~~l 221 (534)
-.++.+||+|...+..+|...|-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 01356777777666666666554
Q ss_pred CCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCC
Q 009477 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (534)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~ 301 (534)
-+ .+.++...+....-....+.....+|..++...+.+....+.++||||+|...++.++..|...|+++..+|++
T Consensus 363 l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 363 LE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 33 33333322211111111223345678888888887777889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC-------CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPL-------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 302 ~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~-------v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
+.+|+..+..|+.+...|+|||++|+||+||+. ..+||+++.|.|...|.||.||+||.|.+|.+..|++.+|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999999875
Q ss_pred H
Q 009477 375 M 375 (534)
Q Consensus 375 ~ 375 (534)
.
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 3
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.8e-38 Score=324.19 Aligned_cols=299 Identities=22% Similarity=0.264 Sum_probs=211.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh-hccCCCeEEEEEcCCCHH------
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL-GRYTDLRISLLVGGDSME------ 134 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~-~~~~~l~~~~~~gg~~~~------ 134 (534)
++++.||||||||++|++|++..+... .+.+++|++|+++|+.|+.+.++.+ +. .+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccC
Confidence 589999999999999999999876543 3568999999999999999988886 43 334444432211
Q ss_pred ------HHHHHHh------CCCCEEEECchHHHHHHHhc-CC--CCCC--CeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 135 ------SQFEELA------QNPDIIIATPGRLMHHLSEV-ED--MSLK--SVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 135 ------~~~~~~~------~~~~IiV~Tp~~l~~~l~~~-~~--~~l~--~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
....... ...+|+|+||+.+++.+... .. ..+. ..++||+||+|.+.+.++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 1111111 13679999999998776541 10 1111 23789999999999765433 555555443
Q ss_pred -CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEe--chhhHHHHHHHHHHHhcCCCCeEEEEEc
Q 009477 198 -ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVS 274 (534)
Q Consensus 198 -~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~k~~~L~~~l~~~~~~~~~~IVF~~ 274 (534)
.+.|+++||||+|+.+..+.......+.....+.... .....+.+..+ ....+...+..++.. ...++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEEC
Confidence 4789999999999888887766543322111111100 00111222111 122344455555533 345789999999
Q ss_pred ChhhHHHHHHHHHHcCC--CceeecCCCCHHHHHH----HHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChh
Q 009477 275 TKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKI----HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (534)
Q Consensus 275 t~~~~e~l~~~L~~~~~--~~~~l~g~~~~~~r~~----~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~ 348 (534)
|+++++.++..|.+.+. .+..+||++++.+|.. +++.|++|+..|||||+++++|+|+| +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988776 4899999999999876 48999999999999999999999996 7899998776 68
Q ss_pred hhHHhhccCCCCCCc----ceEEEEeccc
Q 009477 349 IFVHRVGRAARAGRT----GTAFSFVTSE 373 (534)
Q Consensus 349 ~~~qr~GR~gR~g~~----G~~i~~~~~~ 373 (534)
.|+||+||+||.|+. |.++.+....
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999999864 3666666544
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.7e-38 Score=325.78 Aligned_cols=325 Identities=24% Similarity=0.372 Sum_probs=259.5
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 37 AIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 37 ~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
.|+. .||...+|-|.++|..+++|+|+++..|||+||+++|.+|.+-. .| -+|||+|-.+|-....+.++.
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G-~TLVVSPLiSLM~DQV~~l~~ 79 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EG-LTLVVSPLISLMKDQVDQLEA 79 (590)
T ss_pred HHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CC-CEEEECchHHHHHHHHHHHHH
Confidence 3443 59999999999999999999999999999999999999998764 35 489999999999988888887
Q ss_pred hhccCCCeEEEEEcCCCHHHHHHHHh----CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC--hHHHH
Q 009477 116 LGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQL 189 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~--~~~~~ 189 (534)
.| +.++.+.+..+.+++...+. +..++++-+|++|..--.. +.+.--.+.++||||||+++.|| |...+
T Consensus 80 ~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 80 AG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred cC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 65 88888988877776554332 4589999999998643221 12335578999999999999997 65544
Q ss_pred ---HHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCC--CCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHH-hc
Q 009477 190 ---HKILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE-HI 263 (534)
Q Consensus 190 ---~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~-~~ 263 (534)
..+...+| +.+++.+|||.++.+...+...+. .+..+....+ .+++........ +-...+. .+.+ ..
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~--~~~~q~~-fi~~~~~ 227 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKG--EPSDQLA-FLATVLP 227 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---Cchhhhhhhhcc--cHHHHHH-HHHhhcc
Confidence 44556666 789999999999988887776654 4444433222 223322221111 1122222 3332 22
Q ss_pred CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC
Q 009477 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (534)
Q Consensus 264 ~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~ 343 (534)
...+..||||.|++.+|.+++.|...|+.+...|++|+.++|+.+.+.|.+++.+|+|||.....|||-|++++||+||+
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 344 p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
|.|.+.|.|-+|||||.|.+..|+.++++.|......+
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 99999999999999999999999999999997765443
No 70
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-38 Score=337.26 Aligned_cols=420 Identities=22% Similarity=0.265 Sum_probs=322.0
Q ss_pred CCCCCCHHHHHHHHHCCCC----------------------CCcHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHH
Q 009477 26 ESLNLSPNVFRAIKRKGYK----------------------VPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFLV 79 (534)
Q Consensus 26 ~~l~l~~~l~~~l~~~g~~----------------------~~~~~Q~~ai~~il~~----~d~i~~a~TGsGKT~~~l~ 79 (534)
..++.+..+++.+.++|+. .+++.|+.++..+.+. ...++.|.||||||.+|+-
T Consensus 157 ~~~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~ 236 (730)
T COG1198 157 HAAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE 236 (730)
T ss_pred hhcchhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH
Confidence 3456778888888888763 4688999999988765 5699999999999999995
Q ss_pred HHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHH
Q 009477 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHL 158 (534)
Q Consensus 80 p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~-~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l 158 (534)
.+-+.+. .|+++|||+|.++|..|+.+.++. |+....+-++.+..+..++.|.+...+...|+|||.+.++
T Consensus 237 ~i~~~L~-----~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--- 308 (730)
T COG1198 237 AIAKVLA-----QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--- 308 (730)
T ss_pred HHHHHHH-----cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc---
Confidence 5555544 588999999999999999987765 6655666677777777788888888899999999999998
Q ss_pred HhcCCCCCCCeeEEEEcCCCccc-----cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccc
Q 009477 159 SEVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT 233 (534)
Q Consensus 159 ~~~~~~~l~~~~~iViDEah~l~-----~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 233 (534)
.+++++++||+||.|+-+ ...|+++-.++++.-..+++++|.||| ++++.+.+..-+....+.+..+.
T Consensus 309 -----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~R~ 381 (730)
T COG1198 309 -----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSAT--PSLESYANAESGKYKLLRLTNRA 381 (730)
T ss_pred -----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCC--CCHHHHHhhhcCceEEEEccccc
Confidence 889999999999999865 345888888899888899999999999 66778888866666777776666
Q ss_pred ccCCCceEEEEEechhh------HHHHHHHHHHHhcCCCCeEEEEEcChhh-----------------------------
Q 009477 234 KISPDLKLAFFTLRQEE------KHAALLYMIREHISSDQQTLIFVSTKHH----------------------------- 278 (534)
Q Consensus 234 ~~~~~~~~~~~~~~~~~------k~~~L~~~l~~~~~~~~~~IVF~~t~~~----------------------------- 278 (534)
.........++.++.+. -...|++.+++.+..++|+|+|+|.+..
T Consensus 382 ~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~ 461 (730)
T COG1198 382 GRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATG 461 (730)
T ss_pred cccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCC
Confidence 54434555666665433 2378999999999999999999984321
Q ss_pred -------------------------------HHHHHHHHHHc--CCCceeecCCCCHH--HHHHHHHHHhcCCcEEEEEe
Q 009477 279 -------------------------------VEFLNVLFREE--GLEPSVCYGDMDQD--ARKIHVSRFRARKTMFLIVT 323 (534)
Q Consensus 279 -------------------------------~e~l~~~L~~~--~~~~~~l~g~~~~~--~r~~~~~~F~~g~~~iLI~T 323 (534)
+|++.+.|... +.++..+.++.... .-+..+..|.+|+.+|||+|
T Consensus 462 ~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 462 QLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred eeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecc
Confidence 25666666654 55677777766543 45678999999999999999
Q ss_pred CcccccCCCCCCCEEE--EcCC-------CCCh---hhhHHhhccCCCCCCcceEEEEec-----------cccHHHHHH
Q 009477 324 DVAARGIDIPLLDNVI--NWDF-------PPKP---KIFVHRVGRAARAGRTGTAFSFVT-----------SEDMAYLLD 380 (534)
Q Consensus 324 dv~a~GlDip~v~~VI--~~~~-------p~s~---~~~~qr~GR~gR~g~~G~~i~~~~-----------~~e~~~~~~ 380 (534)
+++++|.|+|++++|. +.|. ..+. ..+.|..||+||++++|.++.-.. .+|+..|+.
T Consensus 542 QmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~ 621 (730)
T COG1198 542 QMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYE 621 (730)
T ss_pred hhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHH
Confidence 9999999999999864 4443 2222 235999999999999998865543 245777888
Q ss_pred HHHHhCCCccCCCChHH------------HHhhhhhHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHHHHhchhhHHH
Q 009477 381 LHLFLSKPIRAAPSEEE------------VLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSL 448 (534)
Q Consensus 381 l~~~~~~~~~~~p~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (534)
-|+..++.+.+||.... +...+......++.....+..++||.|+++.+....|+.+++.++..-..|
T Consensus 622 ~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~~~~~~L 701 (730)
T COG1198 622 QELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSRADL 701 (730)
T ss_pred HHHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEecCcHHHH
Confidence 88889999999995433 222233333333444445578999999999999999999987777766677
Q ss_pred HHHHHHHHHHhh
Q 009477 449 QRTCTNAFRLYS 460 (534)
Q Consensus 449 ~~~~~~~~~~y~ 460 (534)
++........+.
T Consensus 702 ~~~l~~~~~~~~ 713 (730)
T COG1198 702 QKLLRAWLAVLP 713 (730)
T ss_pred HHHHHHHHHHhc
Confidence 777655554443
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.8e-35 Score=330.43 Aligned_cols=325 Identities=24% Similarity=0.325 Sum_probs=243.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
+..+|+++|++++..++.+ ++++++|||+|||.++++++...+.. .+.++|||+||++|+.|+.+.++++....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3346999999999888777 99999999999999999998887732 456899999999999999999998765555
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCc
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q 201 (534)
.++..++|+.+.... ..+..+.+|+|+||+.+...+.. ..+++.++++|||||||++.+......+...+.......+
T Consensus 87 ~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 678888887766543 44456789999999999877664 5678899999999999998765433444444444455677
Q ss_pred EEEEEeeCCHH---HHHHHHhcCC------------------CCeE--EEecccc-----------------------cc
Q 009477 202 TLLFSATLPSA---LAEFAKAGLR------------------DPHL--VRLDVDT-----------------------KI 235 (534)
Q Consensus 202 ~ll~SAT~~~~---~~~~~~~~l~------------------~~~~--i~~~~~~-----------------------~~ 235 (534)
++++|||+... +......... .+.. +.+.... ..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999997422 2222221110 0000 0000000 00
Q ss_pred CCCce----------------EEE--------------------------------------------------------
Q 009477 236 SPDLK----------------LAF-------------------------------------------------------- 243 (534)
Q Consensus 236 ~~~~~----------------~~~-------------------------------------------------------- 243 (534)
..... ...
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 00000 000
Q ss_pred ----------------EEechhhHHHHHHHHHHHhc--CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCC------
Q 009477 244 ----------------FTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD------ 299 (534)
Q Consensus 244 ----------------~~~~~~~k~~~L~~~l~~~~--~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~------ 299 (534)
.......|...|.+++++.. ..+.++||||++++.++.+.+.|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 00011224555566665544 467899999999999999999999999999999886
Q ss_pred --CCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 300 --MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 300 --~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
+++.+|..++++|++|+.+|||+|+++++|+|+|.+++||+||+|+++..|+||+||+||.|. |.++.++..+.
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999865 89998887643
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.2e-35 Score=298.19 Aligned_cols=291 Identities=20% Similarity=0.219 Sum_probs=205.2
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc----CCC
Q 009477 49 IQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY----TDL 122 (534)
Q Consensus 49 ~Q~~ai~~il~~~d--~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~----~~l 122 (534)
+|.++++.+.++.+ +++.||||||||.+|++|++.. +.++++++|+++|+.|+.+.++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999998874 7889999999999999998842 235899999999999999988887643 245
Q ss_pred eEEEEEcCCCHH--HHH------------------HHHhCCCCEEEECchHHHHHHHhc----CCC---CCCCeeEEEEc
Q 009477 123 RISLLVGGDSME--SQF------------------EELAQNPDIIIATPGRLMHHLSEV----EDM---SLKSVEYVVFD 175 (534)
Q Consensus 123 ~~~~~~gg~~~~--~~~------------------~~~~~~~~IiV~Tp~~l~~~l~~~----~~~---~l~~~~~iViD 175 (534)
.+..+.|....+ ... ......+.|+++||+.|..++... ... .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 566666642211 000 111246888999999886554321 001 25789999999
Q ss_pred CCCccccCC-----hHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhc--CCCCeEEEecccc---------------
Q 009477 176 EADCLFGMG-----FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDT--------------- 233 (534)
Q Consensus 176 Eah~l~~~~-----~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~--------------- 233 (534)
|+|.+...+ +......+++......+++++|||+++.+....... ++.+. +.+....
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKI-APIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCcee-eeecCcccccCCChhhhccccc
Confidence 999987433 222444555555556799999999999888877654 44432 2222110
Q ss_pred ----ccCCCceEEEEEechhhHHHHH---HHHHHHhc--CCCCeEEEEEcChhhHHHHHHHHHHcC--CCceeecCCCCH
Q 009477 234 ----KISPDLKLAFFTLRQEEKHAAL---LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEG--LEPSVCYGDMDQ 302 (534)
Q Consensus 234 ----~~~~~~~~~~~~~~~~~k~~~L---~~~l~~~~--~~~~~~IVF~~t~~~~e~l~~~L~~~~--~~~~~l~g~~~~ 302 (534)
...+.+.+.+.. ....+...+ ...+.+.+ .+++++||||+|+..++.++..|+..+ +.+..+||.+++
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 011244444444 333333333 33333222 256799999999999999999999865 567889999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCC
Q 009477 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA 358 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~g 358 (534)
.+|.+. ++.+||||||++++|+|+|.+ +|| ++ |.+...|+||+||+|
T Consensus 311 ~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 998754 378899999999999999986 666 45 889999999999997
No 73
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.2e-35 Score=326.87 Aligned_cols=304 Identities=18% Similarity=0.259 Sum_probs=217.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC----cHHHHHHHHHHHHH-hhccCC
Q 009477 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP----TRDLALQTLKFTKE-LGRYTD 121 (534)
Q Consensus 47 ~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P----treLa~Q~~~~~~~-~~~~~~ 121 (534)
+..-.+.++.+..++.+++.|+||||||+ .+|.+-..... .....+++.-| +++||.|+++.+.. ++...|
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 33444556666677778899999999999 67844322111 11123444557 56888887777664 554444
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC-ccccCChHHH-HHHHHHhcCCC
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSEN 199 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah-~l~~~~~~~~-~~~i~~~~~~~ 199 (534)
+.+ . .+.+ ...++.|+|+|||+|++.+.. ...++++++||||||| ++++.+|... +..++.. .++
T Consensus 152 Y~v----r---f~~~---~s~~t~I~v~TpG~LL~~l~~--d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 152 YKV----R---FNDQ---VSDNTMVKLMTDGILLAEIQQ--DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred eee----c---Cccc---cCCCCCEEEEChHHHHHHHhc--CCccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 332 1 1111 135789999999999999875 3459999999999999 6889888653 4444433 246
Q ss_pred CcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechh------hHHHHHHHHHHHh-cCCCCeEEEE
Q 009477 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE------EKHAALLYMIREH-ISSDQQTLIF 272 (534)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~k~~~L~~~l~~~-~~~~~~~IVF 272 (534)
.|+++||||++.+ .+.+.+.+.| .+.+.... ..+.+.|..+... +....++..+... ....+++|||
T Consensus 219 lKvILmSATid~e--~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 219 LKVIITSATIDPE--RFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred ceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 8999999999753 5666555555 45554332 2345555544321 2233344333322 2356889999
Q ss_pred EcChhhHHHHHHHHHHcCCC---ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC------
Q 009477 273 VSTKHHVEFLNVLFREEGLE---PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------ 343 (534)
Q Consensus 273 ~~t~~~~e~l~~~L~~~~~~---~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~------ 343 (534)
++++.+++.+++.|...++. +..+||++++.+|..+++. .|..+|||||+++++|||+|++++||++++
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999988765 5689999999999999876 578899999999999999999999999863
Q ss_pred ---------C---CChhhhHHhhccCCCCCCcceEEEEeccccHH
Q 009477 344 ---------P---PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (534)
Q Consensus 344 ---------p---~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~ 376 (534)
| .|...|.||+||+||. ++|.||.+++.+++.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 4557899999999999 689999999987654
No 74
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=296.00 Aligned_cols=340 Identities=24% Similarity=0.287 Sum_probs=269.0
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
.-+.++|.+++.+.+.++..|++.+.|+|..|+.. ++.|.|.++.++|+||||++.-++-+.++.. .|.+.|+|+
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLv 268 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLV 268 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEe
Confidence 45678999999999999999999999999999975 6789999999999999999988887777765 377899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH----HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
|..+||+|-++.+++--...+++++.-+|......... .-..+.||||||++-+-+++.. .-.+.+++.|||||
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--GKDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--CCcccccceEEeee
Confidence 99999999998776633567888888888655443321 1123689999999998877764 36789999999999
Q ss_pred CCccccCChHH---HHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec-hhhHH
Q 009477 177 ADCLFGMGFAE---QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKH 252 (534)
Q Consensus 177 ah~l~~~~~~~---~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~ 252 (534)
.|.+-+..... .+..-++.+-+..|++.+|||..+. .++++..--++..+ + ..+.+ ++...+.+. ..+|.
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y--~--~RPVp-lErHlvf~~~e~eK~ 420 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY--D--ERPVP-LERHLVFARNESEKW 420 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee--c--CCCCC-hhHeeeeecCchHHH
Confidence 99988643333 3334445556689999999999665 45666654444333 2 22333 334444444 67788
Q ss_pred HHHHHHHHHhc------CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc
Q 009477 253 AALLYMIREHI------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (534)
Q Consensus 253 ~~L~~~l~~~~------~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~ 326 (534)
+.+..+++... .-.+|+|||++|++.|++++..|...|+++...|++|+..+|+.+...|.++++.++|+|..+
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 88877777533 235799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEE---EcCCCC-ChhhhHHhhccCCCCCC--cceEEEEeccc
Q 009477 327 ARGIDIPLLDNVI---NWDFPP-KPKIFVHRVGRAARAGR--TGTAFSFVTSE 373 (534)
Q Consensus 327 a~GlDip~v~~VI---~~~~p~-s~~~~~qr~GR~gR~g~--~G~~i~~~~~~ 373 (534)
+-|+|+|.-.++. -.+.-| ++..|.|+.|||||.+. .|.+|.++.+.
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999744332 222233 78999999999999875 49999998764
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.4e-35 Score=320.18 Aligned_cols=336 Identities=23% Similarity=0.252 Sum_probs=255.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il-~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
+.+++.+..-++..|+.++.|.|+.++.... +++|+++++|||||||+++++.++..+.++ +.+++++||+++||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa 89 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALA 89 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHH
Confidence 3478888999999999899999999986554 569999999999999999999999998875 56799999999999
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChH
Q 009477 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186 (534)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~ 186 (534)
.|+++.++++ ...|+++...+|+......+ -.+++|+|+||+++...+.+. ...+..+++||+||+|.+.+....
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~-~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKR-PSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcC-cchhhcccEEEEeeeeecCCcccC
Confidence 9999988844 35689999999987654422 367999999999999888763 346889999999999999877444
Q ss_pred HHHHHHHHhc---CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCC-CceEEEEEech------hhHHHHHH
Q 009477 187 EQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP-DLKLAFFTLRQ------EEKHAALL 256 (534)
Q Consensus 187 ~~~~~i~~~~---~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~-~~~~~~~~~~~------~~k~~~L~ 256 (534)
..+..|+..+ ....|++++|||+|+. .+++...-.++............+ .....++.... ..+...++
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 5555554443 3447999999999874 444443333322111111111111 12222332221 12446667
Q ss_pred HHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc-------------------------------------CCCceeecCC
Q 009477 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGD 299 (534)
Q Consensus 257 ~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-------------------------------------~~~~~~l~g~ 299 (534)
..+...+..++++||||+|+..+...+..+... -..++.+|.+
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 777777889999999999999999988888730 0125688999
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE----EcC-----CCCChhhhHHhhccCCCCCCc--ceEEE
Q 009477 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWD-----FPPKPKIFVHRVGRAARAGRT--GTAFS 368 (534)
Q Consensus 300 ~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI----~~~-----~p~s~~~~~qr~GR~gR~g~~--G~~i~ 368 (534)
++...|..+.+.|+.|.++||+||+.+|.|+|+|.-++|| -|+ .+.+.-++.|+.|||||-|-. |.++.
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999866665 556 556788999999999998864 77777
Q ss_pred Eeccc
Q 009477 369 FVTSE 373 (534)
Q Consensus 369 ~~~~~ 373 (534)
+.+..
T Consensus 404 ~~~~~ 408 (766)
T COG1204 404 LATSH 408 (766)
T ss_pred EecCc
Confidence 77443
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=314.97 Aligned_cols=352 Identities=26% Similarity=0.338 Sum_probs=275.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
....+..++.+.|+..|+++|.+|+..+.+|+|+|+..+||||||++|++|+++.+.... ..++|+|.||++||+.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhH
Confidence 445568888899999999999999999999999999999999999999999999998763 33799999999999999
Q ss_pred HHHHHHhhccCC--CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC---CCCCCeeEEEEcCCCccccC-
Q 009477 110 LKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED---MSLKSVEYVVFDEADCLFGM- 183 (534)
Q Consensus 110 ~~~~~~~~~~~~--l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~---~~l~~~~~iViDEah~l~~~- 183 (534)
.+.++++....+ +.+..+.|+..-.+......+.++|++++|.+|-.++..... +.++++++||+||+|-.-..
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999999887766 788888887776666677789999999999999875554222 24678999999999975432
Q ss_pred --C---hHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec---------hh
Q 009477 184 --G---FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------QE 249 (534)
Q Consensus 184 --~---~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~ 249 (534)
. ...++..+++..+.+.|+++.|||+... .+++..+.+......++.+........ .....+ ..
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~-~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRY-FVRREPPIRELAESIRR 289 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceE-EEEeCCcchhhhhhccc
Confidence 1 3455666666667789999999999665 456666666554443333332222222 222222 12
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHH----HHHHHcC----CCceeecCCCCHHHHHHHHHHHhcCCcEEEE
Q 009477 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN----VLFREEG----LEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (534)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~----~~L~~~~----~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI 321 (534)
.....+..++...+..+-++|+|+.++..++.+. ..+...+ ..+...++++...+|.++...|++|+..+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 4455555666666677899999999999999996 4444445 5677889999999999999999999999999
Q ss_pred EeCcccccCCCCCCCEEEEcCCCC-ChhhhHHhhccCCCCCCcceEEEEeccccH--HHHHHHHHHhC
Q 009477 322 VTDVAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDM--AYLLDLHLFLS 386 (534)
Q Consensus 322 ~Tdv~a~GlDip~v~~VI~~~~p~-s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~--~~~~~l~~~~~ 386 (534)
+|..+.-|+|+-.++.||.++.|. +...|.||.||+||.++.+..+..+..+.. .|...-+.++.
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 899999999999999977777776664433 33333344444
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-34 Score=306.44 Aligned_cols=308 Identities=17% Similarity=0.222 Sum_probs=218.7
Q ss_pred CCcHHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 45 VPTPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
.|+|+|++++..+.. | +..++..|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 589999999998774 3 4689999999999999775443 22 34599999999999999999998865555
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHh-------cCCCCCCCeeEEEEcCCCccccCChHHHHHHHHH
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-------~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~ 194 (534)
..+..++|+.... ......|+|+|++.+.....+ +..+.-..+++||+||||++-. ..+..++.
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~ 397 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLT 397 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHH
Confidence 6667777654321 123478999999987532111 1123345789999999999854 33444555
Q ss_pred hcCCCCcEEEEEeeCCHHHHH--HHHhcCCCCeEEEecccccc----CCCceEE--EEE---------------------
Q 009477 195 QLSENRQTLLFSATLPSALAE--FAKAGLRDPHLVRLDVDTKI----SPDLKLA--FFT--------------------- 245 (534)
Q Consensus 195 ~~~~~~q~ll~SAT~~~~~~~--~~~~~l~~~~~i~~~~~~~~----~~~~~~~--~~~--------------------- 245 (534)
.+. ....+++||||..+-.. ....++ .|..+..+..... ...+... .+.
T Consensus 398 ~l~-a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 398 IVQ-AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred hcC-cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 554 45679999998542111 111112 2333333221111 0011111 011
Q ss_pred echhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEEEEEeC
Q 009477 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTD 324 (534)
Q Consensus 246 ~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~iLI~Td 324 (534)
.....|...+..++..+-..+.++||||++..+++.++..|. +..+||++++.+|..++++|++| .+++||+|+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk 550 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK 550 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEec
Confidence 112345556656665443467899999999999999888772 46799999999999999999975 789999999
Q ss_pred cccccCCCCCCCEEEEcCCCC-ChhhhHHhhccCCCCCCcceE-------EEEeccccHH
Q 009477 325 VAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTA-------FSFVTSEDMA 376 (534)
Q Consensus 325 v~a~GlDip~v~~VI~~~~p~-s~~~~~qr~GR~gR~g~~G~~-------i~~~~~~e~~ 376 (534)
++.+|+|+|.+++||+++.|. |...|+||+||++|.+..|.+ |++++.+..+
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 999999999999999999884 999999999999999876665 8999987543
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=297.57 Aligned_cols=343 Identities=22% Similarity=0.283 Sum_probs=240.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
+.++......--+.-.++++|.+.+...+ |+++|+++|||+|||+++..-+..++.... ..++++++||+-|+.|.
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---~~KiVF~aP~~pLv~QQ 122 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---KGKVVFLAPTRPLVNQQ 122 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---cceEEEeeCCchHHHHH
Confidence 34444333333344569999999998888 999999999999999999998888877653 35799999999999998
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHH
Q 009477 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQ 188 (534)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~ 188 (534)
...+..++.. ..+....||.........+....+|+|+||..|.+-|.+.....|+++.++||||||+..... |..-
T Consensus 123 ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~V 200 (746)
T KOG0354|consen 123 IACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNI 200 (746)
T ss_pred HHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHH
Confidence 8777777644 556666676555554556667899999999999888876333447899999999999988554 4444
Q ss_pred HHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCC---------------------CC-----------------------
Q 009477 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAGLR---------------------DP----------------------- 224 (534)
Q Consensus 189 ~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~---------------------~~----------------------- 224 (534)
+...+..-....|+|++||||.+..........+ +.
T Consensus 201 mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 201 MREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIE 280 (746)
T ss_pred HHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHH
Confidence 4455555555569999999996543332210000 00
Q ss_pred ---------eEEEecccc------------ccCCCc--eEE--EEE---------------ec-----------------
Q 009477 225 ---------HLVRLDVDT------------KISPDL--KLA--FFT---------------LR----------------- 247 (534)
Q Consensus 225 ---------~~i~~~~~~------------~~~~~~--~~~--~~~---------------~~----------------- 247 (534)
.++.+.... ...++. .+. |.. ++
T Consensus 281 p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~ 360 (746)
T KOG0354|consen 281 PLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVAL 360 (746)
T ss_pred HHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccch
Confidence 000000000 000000 000 000 00
Q ss_pred --------------------------------hhhHHHHHHHHHHHh--cCCCCeEEEEEcChhhHHHHHHHHHH---cC
Q 009477 248 --------------------------------QEEKHAALLYMIREH--ISSDQQTLIFVSTKHHVEFLNVLFRE---EG 290 (534)
Q Consensus 248 --------------------------------~~~k~~~L~~~l~~~--~~~~~~~IVF~~t~~~~e~l~~~L~~---~~ 290 (534)
...|...|.+.+.+. ..+..++|||+.++..|+.+...|.. .|
T Consensus 361 ~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354|consen 361 KKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred hHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcc
Confidence 000222233333221 13567899999999999999998873 24
Q ss_pred CCceeecC--------CCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCC
Q 009477 291 LEPSVCYG--------DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (534)
Q Consensus 291 ~~~~~l~g--------~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~ 362 (534)
++...+-| +|+|.++.+++++|++|+++|||||+++++|+||+.|++||-||.-.++...+||.|| ||+ +
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ 518 (746)
T KOG0354|consen 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-R 518 (746)
T ss_pred cccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-c
Confidence 45444443 7999999999999999999999999999999999999999999999999999999999 998 5
Q ss_pred cceEEEEeccccHHHHHH
Q 009477 363 TGTAFSFVTSEDMAYLLD 380 (534)
Q Consensus 363 ~G~~i~~~~~~e~~~~~~ 380 (534)
.|.++.+.+..+...+..
T Consensus 519 ns~~vll~t~~~~~~~E~ 536 (746)
T KOG0354|consen 519 NSKCVLLTTGSEVIEFER 536 (746)
T ss_pred CCeEEEEEcchhHHHHHH
Confidence 689988888655444433
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-31 Score=302.06 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=222.7
Q ss_pred CCCCCCcHHHH---HHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHh
Q 009477 41 KGYKVPTPIQR---KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KEL 116 (534)
Q Consensus 41 ~g~~~~~~~Q~---~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~ 116 (534)
..|...-|+.. +.+..+..++.+|+.|+||||||+ .+|.+-.-... ....++++.-|.|--|..++..+ +++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~--~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR--GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC--CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 35655455544 455666667778999999999999 56755332211 11235777789988888877644 345
Q ss_pred hccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC-ccccCChHHH-HHHHHH
Q 009477 117 GRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILG 194 (534)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah-~l~~~~~~~~-~~~i~~ 194 (534)
+...|-.++.-+...+ + ...++.|+++|+|+|++.+.. +..++++++|||||+| ++++.+|... +..++.
T Consensus 136 g~~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 136 GTPLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred CCCcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 4333444443332222 1 245788999999999999875 3458999999999999 5888887765 555554
Q ss_pred hcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech------hhHHHHHHHHHHHhc-CCCC
Q 009477 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHI-SSDQ 267 (534)
Q Consensus 195 ~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~k~~~L~~~l~~~~-~~~~ 267 (534)
.. ++.|+++||||++. ..+.+.+...| .+.+.... ..+...|..... .++...+...+.... ...+
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~G 280 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPG 280 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCC
Confidence 44 57899999999975 45666554444 45444322 123444443321 123445555554432 2458
Q ss_pred eEEEEEcChhhHHHHHHHHHHcCC---CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCC
Q 009477 268 QTLIFVSTKHHVEFLNVLFREEGL---EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (534)
Q Consensus 268 ~~IVF~~t~~~~e~l~~~L~~~~~---~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p 344 (534)
.+|||++++.+++.+++.|...+. .+..+||++++.+|..+++.+ +..+|+|||+++++|+|||++++||+++++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 999999999999999999998654 477899999999999886554 246899999999999999999999999853
Q ss_pred ------------------CChhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 345 ------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 345 ------------------~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
.|...|.||+||+||.| +|.||.+++..++..
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 35678999999999997 899999999876543
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-30 Score=281.43 Aligned_cols=319 Identities=21% Similarity=0.271 Sum_probs=240.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
|.. |++.|--.-=.+..| -|+.++||+|||++|.+|++..+.. |..++|++||++||.|.++++..+.++.+
T Consensus 80 g~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 80 GLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 544 777777655444444 6999999999999999999977653 45699999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcCCCCC-----CCeeEEEEcCCCcccc-----------C-
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFG-----------M- 183 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~~~l-----~~~~~iViDEah~l~~-----------~- 183 (534)
+++++++||.+...+... ..++|+||||++| ++++...-.+++ ..+.++|+||||.++= .
T Consensus 152 Ltv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 999999999887766444 3689999999999 999986323444 5899999999998760 0
Q ss_pred ----ChHHHHHHHHHhcCC--------------CC---------------------------------------------
Q 009477 184 ----GFAEQLHKILGQLSE--------------NR--------------------------------------------- 200 (534)
Q Consensus 184 ----~~~~~~~~i~~~~~~--------------~~--------------------------------------------- 200 (534)
.....+..++..+.. ..
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 011111111111110 00
Q ss_pred -----------------------------------------------------------------------cEEEEEeeC
Q 009477 201 -----------------------------------------------------------------------QTLLFSATL 209 (534)
Q Consensus 201 -----------------------------------------------------------------------q~ll~SAT~ 209 (534)
++-+||+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 233455554
Q ss_pred CHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc
Q 009477 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE 289 (534)
Q Consensus 210 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~ 289 (534)
..+-.+|...|-- ..+.++...+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...
T Consensus 390 ~te~~Ef~~iY~l--~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 390 DTEAYEFQQIYNL--EVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred hhHHHHHHHHhCC--CEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 4444444444422 22222222211111111233445677889999999888889999999999999999999999999
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC----------------------------------
Q 009477 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---------------------------------- 335 (534)
Q Consensus 290 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v---------------------------------- 335 (534)
|+++..+|+.+.+.++..+.+.|+.|. |+|||+||+||+||.--
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999995 99999999999999732
Q ss_pred ----CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 336 ----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 336 ----~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
-+||--..+.|-..=-|..||+||.|.+|.+-.|++-+|
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 268888888888888999999999999999999998655
No 81
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.4e-31 Score=253.18 Aligned_cols=202 Identities=46% Similarity=0.823 Sum_probs=186.1
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 009477 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (534)
Q Consensus 25 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre 104 (534)
|+++++++.+++.+.++|+..|+++|+++++.+.+|+++++.+|||+|||++|++|+++.+.......+++++|++||++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78999999999999999999999999999999999999999999999999999999999988753335788999999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC
Q 009477 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (534)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~ 184 (534)
|+.|+.+.++.+....++.+..++|+.........+..+++|+|+||+.+.+.+.. ....+.+++++|+||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccC
Confidence 99999999999988888999999999988777777777899999999999998886 45778999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEE
Q 009477 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (534)
Q Consensus 185 ~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i 227 (534)
+...+..++..++..+|++++|||+++....+...++.+|.++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999999999999999999999988765
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.3e-30 Score=289.47 Aligned_cols=334 Identities=20% Similarity=0.228 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
.|.|+|..+...++.. ..+++...+|.|||.-+.+.+.+.+... ...++|||||+ .|..||...+.+. +++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~k---F~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRR---FNL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHH---hCC
Confidence 4999999998877653 4699999999999998776655554433 34579999998 8999998877542 235
Q ss_pred eEEEEEcCCCHHHHHH---HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC--hHHHHHHHHHhc-
Q 009477 123 RISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHKILGQL- 196 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~---~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~--~~~~~~~i~~~~- 196 (534)
....+.+ ........ ......+++|+|.+.+...-.....+.-..+++||+||||++.... -... .+.+..+
T Consensus 225 ~~~i~~~-~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~-y~~v~~La 302 (956)
T PRK04914 225 RFSLFDE-ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE-YQVVEQLA 302 (956)
T ss_pred CeEEEcC-cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH-HHHHHHHh
Confidence 5444433 22221110 0112467999999987642211112333478999999999986311 1111 2222222
Q ss_pred CCCCcEEEEEeeCCH-------------------HHHHHH-------------HhcCC-CC-------------------
Q 009477 197 SENRQTLLFSATLPS-------------------ALAEFA-------------KAGLR-DP------------------- 224 (534)
Q Consensus 197 ~~~~q~ll~SAT~~~-------------------~~~~~~-------------~~~l~-~~------------------- 224 (534)
.....++++||||-. +...|. ...+. ++
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 234578999999821 001111 00000 00
Q ss_pred --------------------------------eEEEecccc-ccCCCceEEEEEe-------------------------
Q 009477 225 --------------------------------HLVRLDVDT-KISPDLKLAFFTL------------------------- 246 (534)
Q Consensus 225 --------------------------------~~i~~~~~~-~~~~~~~~~~~~~------------------------- 246 (534)
..++-.... ...+.....-+.+
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 000000000 0000000000000
Q ss_pred -------------chhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHH-HcCCCceeecCCCCHHHHHHHHHHH
Q 009477 247 -------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHVSRF 312 (534)
Q Consensus 247 -------------~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~-~~~~~~~~l~g~~~~~~r~~~~~~F 312 (534)
....|...|..+++.. .+.++||||+++..+..+.+.|. ..|+.+..+||+|++.+|..+++.|
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0122445566666544 47899999999999999999994 6799999999999999999999999
Q ss_pred hcC--CcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCc
Q 009477 313 RAR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (534)
Q Consensus 313 ~~g--~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~ 389 (534)
+++ ..+|||||+++++|+|++.+++|||||+|+++..|.||+||++|.|++|.+.+++...+-..-..+..++...+
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 985 59999999999999999999999999999999999999999999999998766665544333444555555544
No 83
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.7e-30 Score=276.56 Aligned_cols=336 Identities=21% Similarity=0.253 Sum_probs=244.9
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEE
Q 009477 26 ESLNLSPNVFRAIK-----RKGYKVP---TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (534)
Q Consensus 26 ~~l~l~~~l~~~l~-----~~g~~~~---~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~L 97 (534)
+.+++..++.+.+. .+||..| +|+|.+++|.++.++++++.++||+|||++|++|++..+.. +..++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v~ 139 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPVH 139 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCeE
Confidence 56688999998887 6899998 99999999999999999999999999999999999988764 23489
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcCCCCCC-------Ce
Q 009477 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSLK-------SV 169 (534)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~~~l~-------~~ 169 (534)
||+||++||.|..+++..+.++.++++++++||.+...+.... .++|+||||++| ++++.. +.+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999998887654 599999999999 999986 335554 45
Q ss_pred eEEEEcCCCccccC----------------ChH-------HHH--------HHHH---Hhc-------------------
Q 009477 170 EYVVFDEADCLFGM----------------GFA-------EQL--------HKIL---GQL------------------- 196 (534)
Q Consensus 170 ~~iViDEah~l~~~----------------~~~-------~~~--------~~i~---~~~------------------- 196 (534)
.++|+||||.|+-. ... ..+ ..++ +.+
T Consensus 217 ~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 296 (970)
T PRK12899 217 YFAIIDEVDSILIDEARTPLIISGPGEKHNPVYFELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEG 296 (970)
T ss_pred cEEEEechhhhhhhccCCceeeeCCCccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccch
Confidence 89999999988711 100 010 0000 000
Q ss_pred ------------------------CC-------------------------------------C-C--------------
Q 009477 197 ------------------------SE-------------------------------------N-R-------------- 200 (534)
Q Consensus 197 ------------------------~~-------------------------------------~-~-------------- 200 (534)
.+ . +
T Consensus 297 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~ 376 (970)
T PRK12899 297 ISEACRSLWLVSKGMPLNRVLRRVREHPDLRAMIDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVE 376 (970)
T ss_pred hhhhhhhhhhhhccccchhhhhhhhcccchhhhhhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhh
Confidence 00 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 009477 201 -------------------------------------------------------------------------------- 200 (534)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (534)
T Consensus 377 ~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVD 456 (970)
T PRK12899 377 KAGGSAEDFVMMDMGHEYALIEEDETLSPADKINRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIID 456 (970)
T ss_pred hccCCHHHHhccchhhhhhccccccccCHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEe
Confidence
Q ss_pred ------------------------------------------------cEEEEEeeCCHHHHHHHHhcCCCCeEEEeccc
Q 009477 201 ------------------------------------------------QTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (534)
Q Consensus 201 ------------------------------------------------q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (534)
++.+||+|...+-.+|...|-- ..+.++..
T Consensus 457 e~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l--~v~~iPt~ 534 (970)
T PRK12899 457 EHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNL--YVLQVPTF 534 (970)
T ss_pred CCCCccCCCCCcchHHHHHHHhhcCCCCCCCceeeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCC--CEEECCCC
Confidence 1122222222222222211111 11111111
Q ss_pred cccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHH
Q 009477 233 TKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312 (534)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F 312 (534)
......-....+......|..+++..+.+....+.++||-|.|....+.++..|...|++..+++..-...+-+.+-
T Consensus 535 kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia--- 611 (970)
T PRK12899 535 KPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA--- 611 (970)
T ss_pred CCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHH---
Confidence 11000000012234446788889888888888899999999999999999999999999999988764433333332
Q ss_pred hcCC-cEEEEEeCcccccCCCCC--------CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 313 RARK-TMFLIVTDVAARGIDIPL--------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 313 ~~g~-~~iLI~Tdv~a~GlDip~--------v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
..|+ -.|.|||.+|+||.||.- =-+||....|.|...-.|..||+||.|.+|.+..|++-+|
T Consensus 612 ~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 612 GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 2344 469999999999999973 2378999999999999999999999999999999998765
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=5.4e-30 Score=266.67 Aligned_cols=331 Identities=20% Similarity=0.240 Sum_probs=254.3
Q ss_pred CCCcCCCCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCe
Q 009477 22 SGGFESLNLSPNVFRAI-KRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~ai~~il~~------~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~ 94 (534)
..+.-.+..+..+++.+ ...+|+ ||..|++++..|... -+=+++|..|||||.++++.++..+. .|.
T Consensus 239 ~~~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----~G~ 312 (677)
T COG1200 239 KRSGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----AGY 312 (677)
T ss_pred hccCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----cCC
Confidence 33444455666655544 667998 999999999999763 24799999999999999999987765 488
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH---HHh-CCCCEEEECchHHHHHHHhcCCCCCCCee
Q 009477 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (534)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~ 170 (534)
++..++||--||.|-++.+.++....++++..++|...-..... .+. +..+|+|||..-+. ....+++++
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~Lg 386 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNLG 386 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeeccee
Confidence 99999999999999999999999888999999999766544333 333 45999999965443 457899999
Q ss_pred EEEEcCCCccccCChHHHHHHHHHhcCC-CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechh
Q 009477 171 YVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE 249 (534)
Q Consensus 171 ~iViDEah~l~~~~~~~~~~~i~~~~~~-~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 249 (534)
++|+||=|| |.-.-...++.... .+.++.|||||=|. .++-...++-..-.++.-......+....+ ..
T Consensus 387 LVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i---~~ 456 (677)
T COG1200 387 LVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVI---PH 456 (677)
T ss_pred EEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEe---cc
Confidence 999999999 66666666666666 68899999997443 344444444333223222222223333332 23
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEEcChh--------hHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEE
Q 009477 250 EKHAALLYMIREHISSDQQTLIFVSTKH--------HVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (534)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~~~IVF~~t~~--------~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~i 319 (534)
++.+.++..+.+.+.++.|+.|.|+-.+ .++.+++.|... ++++..+||.|+.++++.++++|++|+++|
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 5666777778777789999999998654 455666677643 566899999999999999999999999999
Q ss_pred EEEeCcccccCCCCCCCEEEEcCC-CCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 320 LIVTDVAARGIDIPLLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 320 LI~Tdv~a~GlDip~v~~VI~~~~-p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
||||.|++-|+|+|+.++.|..+. ..-..+..|--||+||.+..+.|+.++.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999776663 2456777999999999999999999998865
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=2.1e-29 Score=272.72 Aligned_cols=319 Identities=21% Similarity=0.272 Sum_probs=246.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l-~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
.|.. |++.|--.-=.+..| -|+.+.||+|||+++.+|++ ..+. |..+-|++||..||.|.++++..+.+.
T Consensus 78 lg~~-~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCC-CCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 4665 889998776556556 49999999999999999996 5542 445789999999999999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcCC-----CCCCCeeEEEEcCCCccc-c----------
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED-----MSLKSVEYVVFDEADCLF-G---------- 182 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~l~~~~~iViDEah~l~-~---------- 182 (534)
.|+++++++|+.+..++.... .++|++|||++| ++++...-. ..+..+.++|+||||.++ +
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999998887766554 589999999999 999875321 236788999999999876 0
Q ss_pred C-----ChHHHHHHHHHhcCC-----------------------------------------------------------
Q 009477 183 M-----GFAEQLHKILGQLSE----------------------------------------------------------- 198 (534)
Q Consensus 183 ~-----~~~~~~~~i~~~~~~----------------------------------------------------------- 198 (534)
. .....+..+...+..
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0 112222222222100
Q ss_pred ----------------------------------------------------------CCcEEEEEeeCCHHHHHHHHhc
Q 009477 199 ----------------------------------------------------------NRQTLLFSATLPSALAEFAKAG 220 (534)
Q Consensus 199 ----------------------------------------------------------~~q~ll~SAT~~~~~~~~~~~~ 220 (534)
-.++.+||+|...+..+|...|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 0135677777766666666665
Q ss_pred CCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 221 LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 221 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
--+ .+.++...+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 387 ~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NLD--VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CCC--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 333 33333322111111112334456778999999998866788999999999999999999999999999999995
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC--------------------------------------CEEEEcC
Q 009477 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------------DNVINWD 342 (534)
Q Consensus 301 ~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v--------------------------------------~~VI~~~ 342 (534)
+.+|+..+..|+.+...|+|||++|+||+||+-- -|||-..
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999853 2688888
Q ss_pred CCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 343 ~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
.|.|...--|..||+||.|.+|.+-.|++-+|
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 99999999999999999999999999998664
No 86
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.3e-30 Score=253.74 Aligned_cols=327 Identities=19% Similarity=0.258 Sum_probs=245.3
Q ss_pred HHHHHHHH-CCCCC-CcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 33 NVFRAIKR-KGYKV-PTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 33 ~l~~~l~~-~g~~~-~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
.+-.+|++ .|+.. -++.|.+|+..+.. ++|+.++.|||+||+++|.+|.+-. .| -.+|++|.++|....
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~g-ITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GG-ITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CC-eEEEehHHHHHHHHH
Confidence 34455655 36654 38999999988776 5799999999999999999998764 34 589999999999988
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCHHHHHHHH------hCCCCEEEECchHH-----HHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGRL-----MHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~------~~~~~IiV~Tp~~l-----~~~l~~~~~~~l~~~~~iViDEah 178 (534)
.+.+.++- +++..+.+..+..+..+.+ .....+++-||+.- -.++.. -.+-+.+.|+|+||||
T Consensus 78 iDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 78 IDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhh
Confidence 88777764 5566665555544443333 23567999999753 223321 1234568999999999
Q ss_pred ccccCC--hHHHHH---HHHHhcCCCCcEEEEEeeCCHHHHHHHHh--cCCCCeEEEeccccccCCCceEEEEEechh--
Q 009477 179 CLFGMG--FAEQLH---KILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQE-- 249 (534)
Q Consensus 179 ~l~~~~--~~~~~~---~i~~~~~~~~q~ll~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 249 (534)
..+.|| |..+.. ++...+ +....+.++||.++.+.+-.-. .+.+|..+.-... -....|+.+.-.
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~-----FR~NLFYD~~~K~~ 225 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT-----FRDNLFYDNHMKSF 225 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-----hhhhhhHHHHHHHH
Confidence 999887 444433 333344 4678999999999888764443 4556654422111 111123322222
Q ss_pred --hHHHHHHHHHHHhcC-----------CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 009477 250 --EKHAALLYMIREHIS-----------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (534)
Q Consensus 250 --~k~~~L~~~l~~~~~-----------~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~ 316 (534)
+-+..|.++....+. -.+-.||||.|++.+|.++-.|...|+++...|.++...+|..+.++|.+++
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 223445555544443 1345899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHH
Q 009477 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (534)
Q Consensus 317 ~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~ 379 (534)
+.|++||-....|+|-|+|+.||++++|.+..-|.|-.||+||.|.+..|-.+++.+|...+.
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876543
No 87
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.9e-30 Score=285.56 Aligned_cols=328 Identities=21% Similarity=0.291 Sum_probs=255.7
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 37 ~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.....|....+|-|.++|..++.|+|+++..|||.||+++|.+|++-. +.-.|||+|-+.|...+...+.
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~~L~-- 325 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVTHLS-- 325 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHHhhh--
Confidence 334569999999999999999999999999999999999999997753 3368999999999887555443
Q ss_pred hccCCCeEEEEEcCCCHHHHH---HHHhC---CCCEEEECchHHHHHHHhc-CCCCCCC---eeEEEEcCCCccccCC--
Q 009477 117 GRYTDLRISLLVGGDSMESQF---EELAQ---NPDIIIATPGRLMHHLSEV-EDMSLKS---VEYVVFDEADCLFGMG-- 184 (534)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~---~~~~~---~~~IiV~Tp~~l~~~l~~~-~~~~l~~---~~~iViDEah~l~~~~-- 184 (534)
..++....+.++....++. +.+.. ..+|+..||+++...-.-. ....+.. +.++|+||||+.+.||
T Consensus 326 --~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHd 403 (941)
T KOG0351|consen 326 --KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHD 403 (941)
T ss_pred --hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccc
Confidence 3469999999988876443 33333 4789999999886432110 1123444 8899999999999887
Q ss_pred hHHH---HHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhc--CCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHH
Q 009477 185 FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (534)
Q Consensus 185 ~~~~---~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (534)
|... +..+....+ ...++.+|||.+..+..-+-.. +.+|.++. .....+++...+..-........+...+
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~~~~~~~ 479 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALLDILEES 479 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchHHHHHHh
Confidence 4443 334444554 4889999999988877655444 45665442 2223344433333222222333334444
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
+. ....+.+||||.++..++.++..|+..|+.+..+|++|+..+|..+...|..++++|++||=+.+.|+|.|+|+.||
T Consensus 480 ~~-~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 480 KL-RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hh-cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 43 35688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 340 ~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
+|.+|.+.+.|.|-+|||||.|....|+.|+...|...+..+
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 999999999999999999999999999999999988776554
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1e-29 Score=280.70 Aligned_cols=312 Identities=19% Similarity=0.223 Sum_probs=206.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc--CC
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY--TD 121 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~--~~ 121 (534)
..|+|+|+.+........-+++.||||+|||.+++..+...+... ...++++..||++++.|+++.++++.+. ..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG---LADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 469999998865433456689999999999999887666433322 2357999999999999999988764432 23
Q ss_pred CeEEEEEcCCCHHHHHHH--------------------Hh----C---CCCEEEECchHHHHHHHhcCCCCCCCe----e
Q 009477 122 LRISLLVGGDSMESQFEE--------------------LA----Q---NPDIIIATPGRLMHHLSEVEDMSLKSV----E 170 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~--------------------~~----~---~~~IiV~Tp~~l~~~l~~~~~~~l~~~----~ 170 (534)
..+...+|.......+.. +. + -.+|+|||...++......+...+..+ +
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 567777776543221111 11 1 268999999988754433222222222 4
Q ss_pred EEEEcCCCccccCChHHHHHHHHHhc-CCCCcEEEEEeeCCHHHHHH-HHhcCCC-C-------eEEEe---------cc
Q 009477 171 YVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEF-AKAGLRD-P-------HLVRL---------DV 231 (534)
Q Consensus 171 ~iViDEah~l~~~~~~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~~-~~~~l~~-~-------~~i~~---------~~ 231 (534)
+|||||+|..-. -....+..+++.+ .....++++|||+|..+... ...+-.. + ..+.. ..
T Consensus 442 vvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 442 VLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred eEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 899999998632 2333444444443 23567999999999887653 3332111 0 01110 00
Q ss_pred cccc---CCCceEEEEEe--chhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcC---CCceeecCCCCHH
Q 009477 232 DTKI---SPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG---LEPSVCYGDMDQD 303 (534)
Q Consensus 232 ~~~~---~~~~~~~~~~~--~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~---~~~~~l~g~~~~~ 303 (534)
.... .......+... ........++..+.+....+++++|||||++.++.+++.|++.+ ..+..+||.+.+.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 0000 00011111111 11112234555555555678899999999999999999999765 5789999999999
Q ss_pred HH----HHHHHHH-hcCC---cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCC
Q 009477 304 AR----KIHVSRF-RARK---TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (534)
Q Consensus 304 ~r----~~~~~~F-~~g~---~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~ 362 (534)
+| +++++.| ++|+ ..|||+|+++++|+|+ +++++|....| .+.++||+||++|.++
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 88 4568888 5665 4799999999999999 47999998777 5799999999999876
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=5.5e-30 Score=268.13 Aligned_cols=298 Identities=22% Similarity=0.285 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 44 KVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
.+|+++|++|+..+.. ++..++.+|||+|||.+++..+-.. +.++||||||++|+.||.+.+..+...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3599999999999988 8889999999999999887444332 233999999999999998766665422
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCC
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~ 199 (534)
. ..++.+.|+.. ... . ..|.|+|...+..... ...+....+++||+||||++....+..-...+ ...
T Consensus 107 ~-~~~g~~~~~~~-~~~-----~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~~ 173 (442)
T COG1061 107 N-DEIGIYGGGEK-ELE-----P-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SAA 173 (442)
T ss_pred c-cccceecCcee-ccC-----C-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccCCcHHHHHHHHhh----hcc
Confidence 1 12333433332 110 1 3699999999987421 12344557999999999998876544333332 222
Q ss_pred CcEEEEEeeCCHHHHH---HHHhcCCCCeEEEeccccccC----CCceEEEEEec-------------------------
Q 009477 200 RQTLLFSATLPSALAE---FAKAGLRDPHLVRLDVDTKIS----PDLKLAFFTLR------------------------- 247 (534)
Q Consensus 200 ~q~ll~SAT~~~~~~~---~~~~~l~~~~~i~~~~~~~~~----~~~~~~~~~~~------------------------- 247 (534)
..++++||||+..-.. .....+ .|..+......... .......+.+.
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 2289999998643211 111111 13344433222111 11111111110
Q ss_pred -------------hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 009477 248 -------------QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (534)
Q Consensus 248 -------------~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~ 314 (534)
...+...+..++.... .+.+++||+.+..+++.++..|...+. +..++|..++.+|..+++.|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0112222333333332 578999999999999999999998888 8899999999999999999999
Q ss_pred CCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCC-CCCcce
Q 009477 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR-AGRTGT 365 (534)
Q Consensus 315 g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR-~g~~G~ 365 (534)
|+.++|+++.++.+|+|+|+++++|......|...|.||+||.-| +..++.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999 333443
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.1e-29 Score=274.33 Aligned_cols=348 Identities=22% Similarity=0.246 Sum_probs=271.5
Q ss_pred CcccchHHhhHHHHhhcC---------------CCCCCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhc----C-
Q 009477 2 SLVSSKAELKRREKQKKK---------------SKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILS----G- 60 (534)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---------------~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~----~- 60 (534)
..+.+++|.+.+++-+++ ....+|. +..+.+......+ .+|. -||-|..||..+.+ +
T Consensus 537 ~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~a-f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~k 614 (1139)
T COG1197 537 HKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFA-FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGK 614 (1139)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCC
Confidence 356677777766655432 1223332 3456666666654 5776 89999999999875 3
Q ss_pred -CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 61 -ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 61 -~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
-|=++||..|-|||.+++-+++.... .|++|.|||||--||+|-++.+++-.....+++..+.--.+..++...
T Consensus 615 pMDRLiCGDVGFGKTEVAmRAAFkAV~-----~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~i 689 (1139)
T COG1197 615 PMDRLICGDVGFGKTEVAMRAAFKAVM-----DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEI 689 (1139)
T ss_pred cchheeecCcCCcHHHHHHHHHHHHhc-----CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHH
Confidence 37999999999999999988776655 579999999999999999998887666778999999887777777655
Q ss_pred Hh----CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHH
Q 009477 140 LA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (534)
Q Consensus 140 ~~----~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (534)
+. +..||||||.--|- +++.+++++++||||.|+ |+-.-.+-++.+..+.-++-+||||=|..-.
T Consensus 690 l~~la~G~vDIvIGTHrLL~------kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 690 LKGLAEGKVDIVIGTHRLLS------KDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred HHHHhcCCccEEEechHhhC------CCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 53 47999999954222 678999999999999999 6666677788888899999999999766667
Q ss_pred HHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--CCCc
Q 009477 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEP 293 (534)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~ 293 (534)
.+-.++.+-.++..+..+..+ +. .|+. +.....+.+.+...+..++|+-...|..+..+.+++.|++. ...+
T Consensus 759 Msm~GiRdlSvI~TPP~~R~p--V~-T~V~---~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI 832 (1139)
T COG1197 759 MSLSGIRDLSVIATPPEDRLP--VK-TFVS---EYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARI 832 (1139)
T ss_pred HHHhcchhhhhccCCCCCCcc--eE-EEEe---cCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEE
Confidence 777888887777655443221 22 1221 22233444555555668999999999999999999999886 4567
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC-CCChhhhHHhhccCCCCCCcceEEEEecc
Q 009477 294 SVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 294 ~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~-p~s~~~~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
.+.||.|+..+-+.++.+|-+|+.+|||||.+++.|||||+++.+|..+- -....+..|.-||+||..+.+.||.++.+
T Consensus 833 ~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 833 AVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred EEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 89999999999999999999999999999999999999999999774332 23467889999999999999999998876
Q ss_pred c
Q 009477 373 E 373 (534)
Q Consensus 373 ~ 373 (534)
+
T Consensus 913 ~ 913 (1139)
T COG1197 913 Q 913 (1139)
T ss_pred c
Confidence 4
No 91
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=268.06 Aligned_cols=333 Identities=19% Similarity=0.268 Sum_probs=236.9
Q ss_pred HCCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCCCeEEEEEcCcHHHHHHHHHHH
Q 009477 40 RKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-----~~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
-.+|..++.+|..++|.+.. +.+.+++||||||||-+|++.++..+.++. ...+.++++|+|+++||..+.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 35788999999999998765 578999999999999999999999888532 235788999999999999988755
Q ss_pred HHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcC---CCCCCCeeEEEEcCCCccccCChHHHHH
Q 009477 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (534)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~---~~~l~~~~~iViDEah~l~~~~~~~~~~ 190 (534)
.+-....|+++.-++|+....... -..++|+|+||+..- .+.+.. ...++.+++||+||+|.+-+.. +..+.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-GpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcCcc-cchHH
Confidence 543346689999999987654432 356899999999753 222211 1236789999999999877653 44455
Q ss_pred HHHHh-------cCCCCcEEEEEeeCCHHHHHHHHhcCCCC--eEEEeccccccCCCceEEEEEechh---hH----HHH
Q 009477 191 KILGQ-------LSENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQE---EK----HAA 254 (534)
Q Consensus 191 ~i~~~-------~~~~~q~ll~SAT~~~~~~~~~~~~l~~~--~~i~~~~~~~~~~~~~~~~~~~~~~---~k----~~~ 254 (534)
.|+.+ .....+++++|||+|+- .+.+...-.+| .+..++..-.+ ..+.+.++-.+.. .. ...
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRP-vpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRP-VPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccc-cceeeeEEeeecccchhhhhhHHHH
Confidence 44443 34567899999999874 33443332332 23333333222 2355555554443 11 122
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc----C-------------------CCceeecCCCCHHHHHHHHHH
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----G-------------------LEPSVCYGDMDQDARKIHVSR 311 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~----~-------------------~~~~~l~g~~~~~~r~~~~~~ 311 (534)
....+.+.+..+.+++|||.++......++.|.+. | ......|.+|...+|..+.+.
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 33344445567899999999999888888877653 2 124577889999999999999
Q ss_pred HhcCCcEEEEEeCcccccCCCCCCCEEE----EcCCCC------ChhhhHHhhccCCCCC--CcceEEEEeccccHHHHH
Q 009477 312 FRARKTMFLIVTDVAARGIDIPLLDNVI----NWDFPP------KPKIFVHRVGRAARAG--RTGTAFSFVTSEDMAYLL 379 (534)
Q Consensus 312 F~~g~~~iLI~Tdv~a~GlDip~v~~VI----~~~~p~------s~~~~~qr~GR~gR~g--~~G~~i~~~~~~e~~~~~ 379 (534)
|..|.++||+||..+|.|+|+|.--++| .||.-. ..-+.+|..|||||.. ..|.++.+-+.+-..+..
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999999744444 222211 2345699999999964 568888777766554443
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.4e-29 Score=268.45 Aligned_cols=320 Identities=21% Similarity=0.254 Sum_probs=239.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |++.|.-+.=.+..|+ |+...||+|||++..+|++-... .|.+|-|++||--||.|=++++..+....
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al-----~G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL-----TGKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH-----cCCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 4665 8999988766666665 99999999999999999887665 36789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-c----------C
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------M 183 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~----------~ 183 (534)
|++++++.|+.+..+... .-.++|+++|...| ++.+... .......+.+.|+||+|.++ + +
T Consensus 149 Gl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 999999998766554433 34789999999876 3444431 11123467899999999765 0 0
Q ss_pred -----ChHHHHHHHHHhcCC------------------------------------------------------------
Q 009477 184 -----GFAEQLHKILGQLSE------------------------------------------------------------ 198 (534)
Q Consensus 184 -----~~~~~~~~i~~~~~~------------------------------------------------------------ 198 (534)
.....+..++..+..
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 011111111111000
Q ss_pred --------------------------------------------------------------------CCcEEEEEeeCC
Q 009477 199 --------------------------------------------------------------------NRQTLLFSATLP 210 (534)
Q Consensus 199 --------------------------------------------------------------------~~q~ll~SAT~~ 210 (534)
-.++.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 013556777766
Q ss_pred HHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcC
Q 009477 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG 290 (534)
Q Consensus 211 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~ 290 (534)
.+-.+|...|--+ .+.++...+....-....+......|..++...+......+.++||||+|+..++.++..|.+.|
T Consensus 387 ~e~~Ef~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 387 TEEEEFREIYNME--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 5555555544332 33333322111111112234455778899999998777789999999999999999999999999
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCC---CCC-----EEEEcCCCCChhhhHHhhccCCCCCC
Q 009477 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGR 362 (534)
Q Consensus 291 ~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip---~v~-----~VI~~~~p~s~~~~~qr~GR~gR~g~ 362 (534)
+++..+|+++.+.++..+...++.|. |+|||++|+||.||+ ++. +||+++.|.|...|.|+.||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888887777777 999999999999995 788 99999999999999999999999999
Q ss_pred cceEEEEecccc
Q 009477 363 TGTAFSFVTSED 374 (534)
Q Consensus 363 ~G~~i~~~~~~e 374 (534)
+|.+..|++.+|
T Consensus 543 ~G~s~~~~sleD 554 (796)
T PRK12906 543 PGSSRFYLSLED 554 (796)
T ss_pred CcceEEEEeccc
Confidence 999999999875
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=233.67 Aligned_cols=338 Identities=18% Similarity=0.260 Sum_probs=257.2
Q ss_pred CCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 009477 26 ESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (534)
Q Consensus 26 ~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre 104 (534)
++++.|.+..+.|++ ...+..+|.|..+|...+.|.++++..|||.||+++|.+|++-. .| -+||+||.+.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------dg-~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------DG-FALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------CC-ceEeechhHH
Confidence 567788888888876 46778999999999999999999999999999999999998753 34 4899999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH---HH---hCCCCEEEECchHHHHHHHhc----CCCCCCCeeEEEE
Q 009477 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---EL---AQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVF 174 (534)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~~---~~~~~IiV~Tp~~l~~~l~~~----~~~~l~~~~~iVi 174 (534)
|.....-.++.++ +....+....+.++-.. .+ .....+++.||+.+..--..| +.+....+.+|-+
T Consensus 146 lmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iai 221 (695)
T KOG0353|consen 146 LMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAI 221 (695)
T ss_pred HHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 9998777788776 66666665555544221 12 235679999999874322111 2355677899999
Q ss_pred cCCCccccCC--hHHH--HHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec--h
Q 009477 175 DEADCLFGMG--FAEQ--LHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--Q 248 (534)
Q Consensus 175 DEah~l~~~~--~~~~--~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~--~ 248 (534)
||+|..+.|| |..+ ...++.+.-++..+++++||.+..+..-++..+.-.....+... -..+++...+..-+ .
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-FNRPNLKYEVRQKPGNE 300 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-cCCCCceeEeeeCCCCh
Confidence 9999999887 3332 33455555568889999999988777666655442222222221 12233332222222 1
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccc
Q 009477 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (534)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~ 328 (534)
++-.+.+..+++... .+...||||-+++++|.++..|+..|+.+...|..|.+.++.-.-+.|..|+++|+|+|-....
T Consensus 301 dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgm 379 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGM 379 (695)
T ss_pred HHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecc
Confidence 223344444444332 4678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhhhHH-------------------------------------------hhccCCCCCCcce
Q 009477 329 GIDIPLLDNVINWDFPPKPKIFVH-------------------------------------------RVGRAARAGRTGT 365 (534)
Q Consensus 329 GlDip~v~~VI~~~~p~s~~~~~q-------------------------------------------r~GR~gR~g~~G~ 365 (534)
|+|-|+++.||+..+|.|.+.|.| -.||+||.+.+..
T Consensus 380 gidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred cCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999999999999999999 6799999999999
Q ss_pred EEEEeccccHHH
Q 009477 366 AFSFVTSEDMAY 377 (534)
Q Consensus 366 ~i~~~~~~e~~~ 377 (534)
|+.++.-.|.-.
T Consensus 460 cilyy~~~difk 471 (695)
T KOG0353|consen 460 CILYYGFADIFK 471 (695)
T ss_pred EEEEechHHHHh
Confidence 999998766543
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=7.9e-27 Score=252.07 Aligned_cols=319 Identities=20% Similarity=0.235 Sum_probs=237.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
|.. |++.|.-.-=.+. +.-|+.++||+|||++|.+|++..... |..|.|++|+++||.|..+++..+..+.|
T Consensus 80 gm~-~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 80 EMR-HFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CCC-cCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 554 7777765543333 446999999999999999999877653 45599999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcCCCCC-----CCeeEEEEcCCCccccC------------
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFGM------------ 183 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~~~l-----~~~~~iViDEah~l~~~------------ 183 (534)
++++++.++.+.... .-.-.++|++|||++| ++++...-.+.. ..+.++|+||+|.++-.
T Consensus 152 lsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 999999998876433 2234799999999999 988876312232 67889999999987611
Q ss_pred ----ChHHHHHHHHHhcC-------------------CC-----------------------------------------
Q 009477 184 ----GFAEQLHKILGQLS-------------------EN----------------------------------------- 199 (534)
Q Consensus 184 ----~~~~~~~~i~~~~~-------------------~~----------------------------------------- 199 (534)
.....+..++..+. ..
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 01111111111000 00
Q ss_pred ---------------------------------------------------------------------------CcEEE
Q 009477 200 ---------------------------------------------------------------------------RQTLL 204 (534)
Q Consensus 200 ---------------------------------------------------------------------------~q~ll 204 (534)
.++-+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 02345
Q ss_pred EEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHH
Q 009477 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNV 284 (534)
Q Consensus 205 ~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~ 284 (534)
||+|...+-.+|...|--+ .+.++........-....+.....+|..+++..+.+....+.++||||+|...++.++.
T Consensus 390 MTGTa~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~ 467 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLD--TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLAR 467 (908)
T ss_pred ccCCChHHHHHHHHHhCCC--EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHH
Confidence 5555555444555544322 22222222111111111233445778889999998888899999999999999999999
Q ss_pred HHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC-----------------------------
Q 009477 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----------------------------- 335 (534)
Q Consensus 285 ~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v----------------------------- 335 (534)
.|...|+++..+|+++++.++..+.+.|+.|. |+|||++|+||.||.--
T Consensus 468 ~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 468 LMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999 99999999999999732
Q ss_pred --------CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 336 --------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 336 --------~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
-+||-...+.|-..=-|..||+||.|.+|.+-.|++-+|
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 368888899999999999999999999999999998765
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.6e-26 Score=217.84 Aligned_cols=305 Identities=21% Similarity=0.260 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
+++|.|+++-..+. +..+.++.|.||+|||.... +.++.... .|.++.+.+|....+..++..++.- +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif-~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~a--F~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIF-QGIEQALN----QGGRVCIASPRVDVCLELYPRLKQA--FS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhH-HHHHHHHh----cCCeEEEecCcccchHHHHHHHHHh--hc
Confidence 68999998876554 46899999999999998643 33444333 5788999999999999999888774 34
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHH-HHHHHhcCCC
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL-HKILGQLSEN 199 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~-~~i~~~~~~~ 199 (534)
+..+.+++|+....- ...++|+|...|++.-. .++++|+||+|..-=.. ...+ .+.-......
T Consensus 170 ~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKE 233 (441)
T ss_pred cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEeccccccccC-CHHHHHHHHHhhccc
Confidence 578899998764322 26799999988886644 47899999999743111 1222 2233344566
Q ss_pred CcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhH-------HHHHHHHHHHhcCCCCeEEEE
Q 009477 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK-------HAALLYMIREHISSDQQTLIF 272 (534)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k-------~~~L~~~l~~~~~~~~~~IVF 272 (534)
.-++++|||+|+.++.-...+- -..+.++.+....+-+.-.|+-...-.| ...|...++.....+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~--~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGN--LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCC--eeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 7789999999998776655442 2334444433333322222332222221 247889999888889999999
Q ss_pred EcChhhHHHHHHHHHH-cCC-CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCC--CChh
Q 009477 273 VSTKHHVEFLNVLFRE-EGL-EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP--PKPK 348 (534)
Q Consensus 273 ~~t~~~~e~l~~~L~~-~~~-~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p--~s~~ 348 (534)
+++....+.++..|+. ... .++.+|+. ...|.+.++.||+|+.++||+|.+++||+.+|++++++.-.-. .+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 9999999999999954 333 34677765 4568888999999999999999999999999999996643322 5788
Q ss_pred hhHHhhccCCCCCC--cceEEEEeccccHH
Q 009477 349 IFVHRVGRAARAGR--TGTAFSFVTSEDMA 376 (534)
Q Consensus 349 ~~~qr~GR~gR~g~--~G~~i~~~~~~e~~ 376 (534)
..+|..||+||.-. .|.++.|.......
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 89999999999743 48887777655443
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1e-26 Score=263.91 Aligned_cols=308 Identities=17% Similarity=0.246 Sum_probs=197.7
Q ss_pred CCcHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 45 VPTPIQRKTMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~-----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
.|+++|.+||..+.. .+.++++++||||||.+++. ++.++.... ...++|+|+|+++|+.|+.+.++.++-.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~--~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK--RFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC--ccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 589999999987752 36799999999999988543 444444331 3468999999999999999988887532
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc----CCCCCCCeeEEEEcCCCcccc---------C---
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFG---------M--- 183 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~----~~~~l~~~~~iViDEah~l~~---------~--- 183 (534)
....+..+++....... .......|+|+|..++...+... ..+.+..+++||+||||+... .
T Consensus 490 ~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 22222222221111111 11245789999999987765321 124577899999999999631 0
Q ss_pred ---ChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHH-------------H-hcCCC---CeEEEeccccc---cCCC--
Q 009477 184 ---GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA-------------K-AGLRD---PHLVRLDVDTK---ISPD-- 238 (534)
Q Consensus 184 ---~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~-------------~-~~l~~---~~~i~~~~~~~---~~~~-- 238 (534)
.+...+..++..+. ...|+|||||......+. . .++.+ |..+....... ....
T Consensus 568 ~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 12456777777653 567999999864322211 1 11111 11111100000 0000
Q ss_pred c---e-----EEEEEech---------------hhHHHHHHHHHHHhcC--CCCeEEEEEcChhhHHHHHHHHHHc----
Q 009477 239 L---K-----LAFFTLRQ---------------EEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (534)
Q Consensus 239 ~---~-----~~~~~~~~---------------~~k~~~L~~~l~~~~~--~~~~~IVF~~t~~~~e~l~~~L~~~---- 289 (534)
+ . ........ ......++..+.+.+. ..+++||||.++.||+.+.+.|.+.
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0 0 00000000 0011122222222221 2479999999999999998887653
Q ss_pred --CC---CceeecCCCCHHHHHHHHHHHhcCCc-EEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCC
Q 009477 290 --GL---EPSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (534)
Q Consensus 290 --~~---~~~~l~g~~~~~~r~~~~~~F~~g~~-~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g 361 (534)
++ .+..++|+.+ .+..++++|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|.|++||+.|..
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3456888875 46779999999887 69999999999999999999999999999999999999999963
No 97
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=247.73 Aligned_cols=340 Identities=20% Similarity=0.296 Sum_probs=243.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCC------CCeEEEEEcCc
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ------GGVRALILSPT 102 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~------~g~~~Lil~Pt 102 (534)
++.+-..+.. |+.+++++|....+..+.+ .++++|||||+|||.++++-+++.+..+... ...++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444443 7778999999999998886 5799999999999999999999999877652 23479999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc-CCCC-CCCeeEEEEcCCCcc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-EDMS-LKSVEYVVFDEADCL 180 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~-~~~~-l~~~~~iViDEah~l 180 (534)
.+|+..+...+.+-....+++|.-++|+.....+. -.++.|+|+||+.-- .+.+. .+.. .+-+.++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999998877666667899999999976643321 146899999999753 33331 1111 335788999999987
Q ss_pred ccCChHHHHHHHHHh-------cCCCCcEEEEEeeCCHH--HHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhH
Q 009477 181 FGMGFAEQLHKILGQ-------LSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~-------~~~~~q~ll~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k 251 (534)
-+. .+..+..|..+ -...+..+++|||+|+- +..|.+-. .+.+...+..-. +..+.+.|+-+...+.
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~--~~glf~fd~syR-pvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVD--PEGLFYFDSSYR-PVPLKQQYIGITEKKP 525 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccC--cccccccCcccC-cCCccceEeccccCCc
Confidence 543 23444444332 23578899999999874 22332222 233333333332 3356777776655432
Q ss_pred H-------HHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHH------------------------------------
Q 009477 252 H-------AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------ 288 (534)
Q Consensus 252 ~-------~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~------------------------------------ 288 (534)
. ++..+.+-++.++ .|+|||+-++++.-..+..++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 2 2344444455554 8999999998877666555542
Q ss_pred -cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE----EcCC------CCChhhhHHhhccC
Q 009477 289 -EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWDF------PPKPKIFVHRVGRA 357 (534)
Q Consensus 289 -~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI----~~~~------p~s~~~~~qr~GR~ 357 (534)
..+..+.+|.+|+..+|....+-|+.|.++|||+|-.+|+|+|+|.-+++| -||+ +.++.+..|+.||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 024477899999999999999999999999999999999999999877777 3443 45788999999999
Q ss_pred CCCCC--cceEEEEeccccHHHHHH
Q 009477 358 ARAGR--TGTAFSFVTSEDMAYLLD 380 (534)
Q Consensus 358 gR~g~--~G~~i~~~~~~e~~~~~~ 380 (534)
||.+. .|..+.+-...|..|...
T Consensus 685 grp~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHH
Confidence 99765 477777666667666544
No 98
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.7e-26 Score=208.55 Aligned_cols=165 Identities=38% Similarity=0.598 Sum_probs=143.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEE
Q 009477 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (534)
Q Consensus 47 ~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~ 126 (534)
||+|.++++.+.+|+++++.||||+|||++|++|+++.+.+. ...+++|++|+++|+.|+.+.+..++...++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988764 22479999999999999999999998888899999
Q ss_pred EEcCCCHH-HHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCC--CCcEE
Q 009477 127 LVGGDSME-SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTL 203 (534)
Q Consensus 127 ~~gg~~~~-~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~--~~q~l 203 (534)
++|+.... .....+.++++|+|+||++|.+.+.. ....+.++++||+||+|.+....+...+..++..+.. +.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISN-GKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT-TSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccccCcchhhccccc-cccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 99998866 44455567899999999999999987 3347778999999999999998888888888888733 58999
Q ss_pred EEEeeCCHHHHH
Q 009477 204 LFSATLPSALAE 215 (534)
Q Consensus 204 l~SAT~~~~~~~ 215 (534)
++|||+++.++.
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999999966543
No 99
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=227.29 Aligned_cols=312 Identities=18% Similarity=0.238 Sum_probs=226.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhhccCCCeE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRI 124 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~ 124 (534)
.+++-.+.+.++..++-+|+.|.||||||. .+|-+-.-... .+.|+++-+--|.|.-|..++. +.++++-..|-.|
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGy-tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGY-TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccc-ccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 455556667777777889999999999998 56643322222 2346678899999999998876 4455554443333
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc-cccCChHHHHHHHHHhcCCCCcEE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQLHKILGQLSENRQTL 203 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~-l~~~~~~~~~~~i~~~~~~~~q~l 203 (534)
+.-+--++.. ...+-|-++|.|+|++.+. ...+|.++++||+||||+ .+..+..-.+..-+..+.+..+++
T Consensus 343 GYsIRFEdcT------SekTvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 343 GYSIRFEDCT------SEKTVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred ceEEEecccc------CcceeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 3322211111 1346688999999998876 367899999999999994 455555555555556667889999
Q ss_pred EEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHH--hcCCCCeEEEEEcChhhHHH
Q 009477 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE--HISSDQQTLIFVSTKHHVEF 281 (534)
Q Consensus 204 l~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~~~~~IVF~~t~~~~e~ 281 (534)
+.|||+..+ -+..++.+..++.++.+.. .+...|...+..+-.++.+.-+.+ ...+.+.+|||....+..+.
T Consensus 415 IsSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 415 ISSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eeccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 999998754 5566777777777665442 344455555555555555444433 22467899999999998888
Q ss_pred HHHHHHHc----C-----CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC---------
Q 009477 282 LNVLFREE----G-----LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF--------- 343 (534)
Q Consensus 282 l~~~L~~~----~-----~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~--------- 343 (534)
..+.|.+. | +-+..+|++++++.+..+++---.|-.+|++||.+|+..+.|+++.+||+.++
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 77777642 3 34678999999999999998888899999999999999999999999997665
Q ss_pred ---------CCChhhhHHhhccCCCCCCcceEEEEeccccH
Q 009477 344 ---------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (534)
Q Consensus 344 ---------p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~ 375 (534)
|.|-..-.||.|||||.| +|.|+-+++...+
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 345556799999999986 6999999996543
No 100
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=224.97 Aligned_cols=307 Identities=19% Similarity=0.266 Sum_probs=218.7
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHHHHH-HHHHhhccCCCeEEE
Q 009477 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISL 126 (534)
Q Consensus 49 ~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~~~ 126 (534)
.-.+.+..+.+++-+|+.|+||||||+ .+|-+ |.+.- ...|. +.+.-|.|--|..+++ +..+.+...|-.|+.
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 334566667778889999999999998 55533 22221 22344 8889999999988887 455666666666655
Q ss_pred EEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc-ccCChH-HHHHHHHHhcCCCCcEEE
Q 009477 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFA-EQLHKILGQLSENRQTLL 204 (534)
Q Consensus 127 ~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l-~~~~~~-~~~~~i~~~~~~~~q~ll 204 (534)
.+--++.. ...+.|.++|.|.|++.+.. +..|+.+++||+||||+= +..+.. .-+.++++. +...++++
T Consensus 130 ~IRFed~t------s~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIi 200 (674)
T KOG0922|consen 130 TIRFEDST------SKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLII 200 (674)
T ss_pred EEEecccC------CCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEE
Confidence 55432221 23578999999999998874 567999999999999953 232222 233344433 34578999
Q ss_pred EEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHH--hcCCCCeEEEEEcChhhHHHH
Q 009477 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE--HISSDQQTLIFVSTKHHVEFL 282 (534)
Q Consensus 205 ~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~~~~~IVF~~t~~~~e~l 282 (534)
+|||+..+ ....|+.+...+.+..+. -.++..|..-+..+-.++.+..+.+ .-.+.+.+|||.+..++++.+
T Consensus 201 mSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 201 MSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred EeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 99998754 455566665555554433 2344445443433433333333222 125677999999999999999
Q ss_pred HHHHHHc----CC----CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC-----------
Q 009477 283 NVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF----------- 343 (534)
Q Consensus 283 ~~~L~~~----~~----~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~----------- 343 (534)
++.|.+. +- -+..+||.|+.+++.++++.-..|..+|+++|.+++..+.||++.+||+-++
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9999864 11 1467999999999999988888899999999999999999999999996553
Q ss_pred -------CCChhhhHHhhccCCCCCCcceEEEEeccccHH
Q 009477 344 -------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (534)
Q Consensus 344 -------p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~ 376 (534)
|.|...-.||.|||||.| +|.||-+++.+++.
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 457777899999999985 69999999988753
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-24 Score=236.45 Aligned_cols=339 Identities=19% Similarity=0.253 Sum_probs=243.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHhhccCCCeE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRI 124 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~~l~~ 124 (534)
-+....+.+..+..++-+|+.|+||||||+..-.-+++... ..+..+.+.-|.|--|..+++. .++++...|-.|
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 35555666777777888999999999999943322333221 2344688899999888888774 455666666666
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc-cccCChHH-HHHHHHHhcCCCCcE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAE-QLHKILGQLSENRQT 202 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~-l~~~~~~~-~~~~i~~~~~~~~q~ 202 (534)
+..+-.++. ...++.|-++|.|.|+..+.. +..|+.+++||+||+|+ .++.++.- -+..++...++..++
T Consensus 127 GY~iRfe~~------~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFESK------VSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeecc------CCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 666554432 235688999999999999975 46699999999999995 34444433 344556667777999
Q ss_pred EEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec-hhh-HHHHHHHHHHHhc-CCCCeEEEEEcChhhH
Q 009477 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEE-KHAALLYMIREHI-SSDQQTLIFVSTKHHV 279 (534)
Q Consensus 203 ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-k~~~L~~~l~~~~-~~~~~~IVF~~t~~~~ 279 (534)
|.||||+..+ -+..++++...+.++... -.++..|.... .+. -.+.+...+.... ...+.+|||.+...++
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~---fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRT---YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCc---cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999998764 445566666666665443 23444552222 223 3455555555443 3578899999999999
Q ss_pred HHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC------------
Q 009477 280 EFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------ 343 (534)
Q Consensus 280 e~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~------------ 343 (534)
+..++.|.+ ....+..+||.|+..++.++++--..|+.+|+++|++|+.+|.||++.+||+-+.
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999998 3467889999999999999888777787889999999999999999999996654
Q ss_pred ------CCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHHh
Q 009477 344 ------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIA 414 (534)
Q Consensus 344 ------p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 414 (534)
|.|..+..||.||+||.+ +|.||-+++.+++.. +...+.+|....++.+....+...-.
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~-----------~~~~t~PEIlrtdLs~~vL~l~~~G~ 417 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLA-----------FPEFTLPEILRTDLSGLVLQLKSLGI 417 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHHh-----------cccCCChhhhhcchHHHHHHHHhcCC
Confidence 456677899999999974 699999999865432 22334445555667776666665443
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=5.8e-26 Score=241.55 Aligned_cols=343 Identities=18% Similarity=0.231 Sum_probs=251.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHH--HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 28 LNLSPNVFRAIKRKGYKVPTPIQRKTM--PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~ai--~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
.+++....-..+.+|...++.+|.+++ |.++.+++.|..+||+.|||++.-+.++..+... ++.++.+.|....
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsi 281 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSI 281 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeeh
Confidence 445555555566789999999999998 7888999999999999999999999998887764 3458999999888
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHh-cCCCCCCCeeEEEEcCCCccccCC
Q 009477 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMG 184 (534)
Q Consensus 106 a~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-~~~~~l~~~~~iViDEah~l~~~~ 184 (534)
+..-...+..|+...|+.+....|.......+ +...+.|||-++-..++.. .+.-.++.+++||+||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 88888888888888999999888765443332 3467999999875544432 123457789999999999999988
Q ss_pred hHHHHHHHHHhc-----CCCCcEEEEEeeCCHH--HHHHHHhcCCCCeEEEeccccccCCCceEEEEEe-----------
Q 009477 185 FAEQLHKILGQL-----SENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL----------- 246 (534)
Q Consensus 185 ~~~~~~~i~~~~-----~~~~q~ll~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~----------- 246 (534)
..+.+..++..+ ....|++++|||+|+. +..+..+.+....+-.+...+...+ ...++..
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~--G~~i~~~~r~~~lr~ia~ 435 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKP--GSLIYESSRNKVLREIAN 435 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCC--CcccccchhhHHHHHhhh
Confidence 777777776543 3346799999999863 4445444332111111111111111 0001111
Q ss_pred -----chhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--------------------------------
Q 009477 247 -----RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------- 289 (534)
Q Consensus 247 -----~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-------------------------------- 289 (534)
...+..+.+..++.+.+..+.++||||+++..++.++..+...
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 1111224556666666777888999999999998776544320
Q ss_pred ------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC----CCChhhhHHhhccCCC
Q 009477 290 ------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF----PPKPKIFVHRVGRAAR 359 (534)
Q Consensus 290 ------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~----p~s~~~~~qr~GR~gR 359 (534)
.+.++++|.+++.++|+.+...|++|...|+.||+.++.|+|+|.-+++|-.-. +.+--.|.|++|||||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 134789999999999999999999999999999999999999999888874322 2456789999999999
Q ss_pred CCCc--ceEEEEeccccHHHHHH
Q 009477 360 AGRT--GTAFSFVTSEDMAYLLD 380 (534)
Q Consensus 360 ~g~~--G~~i~~~~~~e~~~~~~ 380 (534)
+|-+ |.++.++.+.|...+..
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred cccccCcceEEEeeccchhHHHH
Confidence 9864 99999999998766654
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.93 E-value=4e-24 Score=238.68 Aligned_cols=319 Identities=20% Similarity=0.250 Sum_probs=219.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
+|.|+|.+++..+. .|.+.|+...+|.|||+..+.. +..+...... ...+|||||. .+..||.+.+++++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~-~gp~LIVvP~-SlL~nW~~Ei~kw~p-- 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGI-TGPHMVVAPK-STLGNWMNEIRRFCP-- 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCC-CCCEEEEeCh-HHHHHHHHHHHHHCC--
Confidence 68999999998765 4678999999999999875433 3333322212 2358999997 667889998988873
Q ss_pred CCeEEEEEcCCCHHHHHH---HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 121 DLRISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~---~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
.+++..++|......... ......+|+|+|++.+...... +.-..+++||+||||++-+. .......+..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~ 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHhh
Confidence 467777777543322211 1134689999999998765433 33346789999999998874 344556666665
Q ss_pred CCCcEEEEEeeCCH-HHHHH---HHhcCC--------------------------------CCeEEE-ec--cccccCCC
Q 009477 198 ENRQTLLFSATLPS-ALAEF---AKAGLR--------------------------------DPHLVR-LD--VDTKISPD 238 (534)
Q Consensus 198 ~~~q~ll~SAT~~~-~~~~~---~~~~l~--------------------------------~~~~i~-~~--~~~~~~~~ 238 (534)
....+++||||-. .+.++ +..... .|..++ .. .....++
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp- 396 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP- 396 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC-
Confidence 4456899999831 11111 110000 000000 00 0000011
Q ss_pred ceEEEEEec---------------------------------------------------------------hhhHHHHH
Q 009477 239 LKLAFFTLR---------------------------------------------------------------QEEKHAAL 255 (534)
Q Consensus 239 ~~~~~~~~~---------------------------------------------------------------~~~k~~~L 255 (534)
.....+.+. ...|...|
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 011111111 11234444
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC---cEEEEEeCcccccCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGIDI 332 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~---~~iLI~Tdv~a~GlDi 332 (534)
..++......+.++|||+......+.+.+.|...|+....++|+++..+|..+++.|.+.. .-+|++|.+++.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4555555556889999999999999999999999999999999999999999999997643 3578999999999999
Q ss_pred CCCCEEEEcCCCCChhhhHHhhccCCCCCCcc--eEEEEeccccH
Q 009477 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (534)
Q Consensus 333 p~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G--~~i~~~~~~e~ 375 (534)
..+++||+||++|+|....|++||+.|.|+.. .+|.|++.+-+
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999999999999999999999875 45667776543
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-24 Score=238.06 Aligned_cols=318 Identities=19% Similarity=0.256 Sum_probs=231.6
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-H
Q 009477 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-E 115 (534)
Q Consensus 37 ~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~ 115 (534)
-....||+ |-++|++|+..+..|..++++||||||||.+.-.++...+.. |.++++.+|.++|..|.+..+. +
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHHH
Confidence 34557887 999999999999999999999999999999988777766553 5679999999999999997554 4
Q ss_pred hhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHh
Q 009477 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~ 195 (534)
|+.. .-.++.++|+.+. ..+..++|+|-+-|-.++.+ ....+..+..|||||+|.+.+...+-.+.+++-.
T Consensus 186 fgdv-~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred hhhh-hhhccceecceee-------CCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 5533 3346777876653 45688999999888877775 4567899999999999999999888999999999
Q ss_pred cCCCCcEEEEEeeCCHHHHH--HHHhcCCCCeEEEeccccccCCCceEEEEEe-------chhhH-----H---------
Q 009477 196 LSENRQTLLFSATLPSALAE--FAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-------RQEEK-----H--------- 252 (534)
Q Consensus 196 ~~~~~q~ll~SAT~~~~~~~--~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~k-----~--------- 252 (534)
+|...+++++|||.|+..+- +....-..|..+... +.... .+.+.++.- ....+ .
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t-~~Rpv-PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST-EHRPV-PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee-cCCCC-CeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 99999999999999876443 222222333333222 22222 222222211 11110 0
Q ss_pred ---------------------------------HHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHH-----------
Q 009477 253 ---------------------------------AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------- 288 (534)
Q Consensus 253 ---------------------------------~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~----------- 288 (534)
..+...+.. ...-++|+|+-++..|+..+..+..
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 011111111 1345799999999988876655431
Q ss_pred -----------------cCCC-------------ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 289 -----------------EGLE-------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 289 -----------------~~~~-------------~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
.+++ ..++|++|=+.-+..+..-|..|-++|+++|.+.+.|+|.|.-++|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv 492 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVV 492 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccccee
Confidence 1121 3478999999999999999999999999999999999999986666
Q ss_pred E--------EcCCCCChhhhHHhhccCCCCCCc--ceEEEEeccc
Q 009477 339 I--------NWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (534)
Q Consensus 339 I--------~~~~p~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~ 373 (534)
+ +-....++..|.|..|||||.|.+ |.+++.-.+.
T Consensus 493 ~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 493 FTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 5 112345789999999999999975 7777775543
No 105
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=228.33 Aligned_cols=313 Identities=20% Similarity=0.242 Sum_probs=226.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..+|+ |-+.|++||.++..|..+++.|+|.+|||.++-.++.-. .. .+.|+++-+|-.+|..|-++.++.-..
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~----h~TR~iYTSPIKALSNQKfRDFk~tF~- 365 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK----HMTRTIYTSPIKALSNQKFRDFKETFG- 365 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh----hccceEecchhhhhccchHHHHHHhcc-
Confidence 34666 999999999999999999999999999998876544322 11 477899999999999998877666322
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCC
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~ 199 (534)
.++.++|+.. +......+|+|.+-|..++.+. .--+.++++|||||+|-+.+...+-.+.+++-.+|..
T Consensus 366 ---DvgLlTGDvq-------inPeAsCLIMTTEILRsMLYrg-adliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 ---DVGLLTGDVQ-------INPEASCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred ---ccceeeccee-------eCCCcceEeehHHHHHHHHhcc-cchhhccceEEEeeeeecccccccccceeeeeecccc
Confidence 2337788654 3456789999999998888763 3347889999999999999888888899999999999
Q ss_pred CcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechh------------------------------
Q 009477 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE------------------------------ 249 (534)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------------------ 249 (534)
.+++++|||.|+..+---|.+-..-..+.+....+.+-.+++.++.-..-
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999999999875543333322222222222211122222222211000
Q ss_pred ----------------------------------hH----HHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCC
Q 009477 250 ----------------------------------EK----HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGL 291 (534)
Q Consensus 250 ----------------------------------~k----~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~ 291 (534)
.+ ...++..++.. .--++||||-+++.|++.++.|....+
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~--~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK--NLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc--ccCceEEEEEccccHHHHHHHHhccCc
Confidence 00 12222222221 234799999999999998888865321
Q ss_pred ---------------------------------------CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCC
Q 009477 292 ---------------------------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332 (534)
Q Consensus 292 ---------------------------------------~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDi 332 (534)
.++++||++=+--++-+.--|..|-++||+||...|.|+|.
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 15688999999888999999999999999999999999999
Q ss_pred CCCCEEEEcCC---------CCChhhhHHhhccCCCCCCc--ceEEEEeccc
Q 009477 333 PLLDNVINWDF---------PPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (534)
Q Consensus 333 p~v~~VI~~~~---------p~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~ 373 (534)
|.-++|+ -.+ -..|..|+|++|||||.|-+ |+++.+....
T Consensus 673 PARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 673 PARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9866655 222 13578899999999999864 7777666543
No 106
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=5.6e-24 Score=210.66 Aligned_cols=397 Identities=17% Similarity=0.202 Sum_probs=280.2
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
-++|...+.++...+.++++.-...|..+.+.+..+..++-+++.|.||||||.-.--..++....+ ...+...-|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~----~~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH----LTGVACTQP 99 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----ccceeecCc
Confidence 7899999999999999998876667888888888888899999999999999983322223333333 244788889
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhC-CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
.|.-|.+++... +..+++..+.-+| +...++.... ++-.-++|.|.|++... .+..+..+++||+||||+-
T Consensus 100 rrvaamsva~RV---adEMDv~lG~EVG---ysIrfEdC~~~~T~Lky~tDgmLlrEam--s~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 100 RRVAAMSVAQRV---ADEMDVTLGEEVG---YSIRFEDCTSPNTLLKYCTDGMLLREAM--SDPLLGRYGVIILDEAHER 171 (699)
T ss_pred hHHHHHHHHHHH---HHHhccccchhcc---ccccccccCChhHHHHHhcchHHHHHHh--hCcccccccEEEechhhhh
Confidence 999998876533 2333444443333 1112222221 22244688898887764 4567899999999999963
Q ss_pred c-cCC-hHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHH
Q 009477 181 F-GMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (534)
Q Consensus 181 ~-~~~-~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (534)
. ..+ ....+.+++... +..+++.+|||+... -...|+.++.++.++. ...++..|..-...+..++.++.
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEAAIRT 243 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHHHHHH
Confidence 2 221 233445555555 488999999997543 5566778887877764 23355555555556666666555
Q ss_pred HHH--hcCCCCeEEEEEcChhhHHHHHHHHHHc---------CCCceeecCCCCHHHHHHHHHHHh---cC--CcEEEEE
Q 009477 259 IRE--HISSDQQTLIFVSTKHHVEFLNVLFREE---------GLEPSVCYGDMDQDARKIHVSRFR---AR--KTMFLIV 322 (534)
Q Consensus 259 l~~--~~~~~~~~IVF~~t~~~~e~l~~~L~~~---------~~~~~~l~g~~~~~~r~~~~~~F~---~g--~~~iLI~ 322 (534)
+.+ .....+.++||....++++..++.+... .+++..+| +.+...+++--. +| ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEE
Confidence 543 2345789999999999999888877642 24566777 222222222111 12 3589999
Q ss_pred eCcccccCCCCCCCEEEEcCC------------------CCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHH
Q 009477 323 TDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (534)
Q Consensus 323 Tdv~a~GlDip~v~~VI~~~~------------------p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~ 384 (534)
|.++...+.++++.+||..++ |.|...-.||.||+||. ++|.|+.+++.. +
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~----------~ 388 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE----------A 388 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH----------h
Confidence 999999999999999997664 56677789999999996 789999999865 6
Q ss_pred hCCCccCCCChHHHHhhhhhHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHH-----HHhchhhHHHHHHHH
Q 009477 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI-----IDSSADLNSLQRTCT 453 (534)
Q Consensus 385 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 453 (534)
+++.+.+.+.++....++......+++....+...+..++++..+.++..++.+ ++++.++..+...+.
T Consensus 389 ~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imS 462 (699)
T KOG0925|consen 389 FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMS 462 (699)
T ss_pred hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhh
Confidence 778888888888888889999999998888888888888888888888777654 455556665554443
No 107
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=4.2e-23 Score=211.35 Aligned_cols=366 Identities=17% Similarity=0.212 Sum_probs=237.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhhccCC
Q 009477 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTD 121 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~~~~~~ 121 (534)
|......+.+.+..|..++-+|++|.||||||.- +|-+-..... ..+| -+-+--|.|.-|..+++.+ .+++-..|
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~edGY-~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYEDGY-ADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhccc-ccCC-eeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 3334555666666666778899999999999984 3322222222 2233 4666779999999988744 44644444
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc-cccCChHHHHHHHHHhcCCCC
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQLHKILGQLSENR 200 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~-l~~~~~~~~~~~i~~~~~~~~ 200 (534)
-.++.-+--++.. ...+.|-++|.|-|++.... .-.|..+.+||+||||+ .++.+..-.+.+.+-.-..+.
T Consensus 430 ~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 430 DTVGYSIRFEDVT------SEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred cccceEEEeeecC------CCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 4444333221111 13467999999999977653 45688999999999995 445554444444444455688
Q ss_pred cEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHH-HHHHHHhc-CCCCeEEEEEcChhh
Q 009477 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL-LYMIREHI-SSDQQTLIFVSTKHH 278 (534)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L-~~~l~~~~-~~~~~~IVF~~t~~~ 278 (534)
+++..||||.. ..|.. ++++.....++.+. -.++..|...+.++-..+. .+.+.-++ ...+.+|||....+.
T Consensus 502 KliVtSATm~a--~kf~n-fFgn~p~f~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 502 KLIVTSATMDA--QKFSN-FFGNCPQFTIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred eEEEeeccccH--HHHHH-HhCCCceeeecCCc---cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 99999999864 34544 44443344444333 2355566665555544433 33333222 345889999998877
Q ss_pred HHHHHHHHHH----------cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC-----
Q 009477 279 VEFLNVLFRE----------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF----- 343 (534)
Q Consensus 279 ~e~l~~~L~~----------~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~----- 343 (534)
+|-.+..+.. .++.+..+|+.|+++-+.++++.-..|..+++|||.+|+..+.+|++.+||..++
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 7665554433 1577899999999999999988888888999999999999999999999996653
Q ss_pred -------------CCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHH
Q 009477 344 -------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410 (534)
Q Consensus 344 -------------p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 410 (534)
|.|...--||.|||||.| +|.||-+++...+ ...+...+.++-..-++..+...++
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay----------~~eml~stvPEIqRTNl~nvVLlLk 724 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY----------KNEMLPSTVPEIQRTNLSNVVLLLK 724 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH----------HhhcccCCCchhhhcchhhHHHHHH
Confidence 556666799999999985 6999999987532 1122333444444445555555555
Q ss_pred HHHhcCCccccCCchhHHHHHHHHHHH
Q 009477 411 QAIANGETIYGRFPQTVIDLVSDRVRE 437 (534)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ 437 (534)
....++..-|..+.+|..+.+...+.+
T Consensus 725 slgV~dll~FdFmD~Pped~~~~sly~ 751 (1042)
T KOG0924|consen 725 SLGVDDLLKFDFMDPPPEDNLLNSLYQ 751 (1042)
T ss_pred hcChhhhhCCCcCCCCHHHHHHHHHHH
Confidence 444433333445555555555544444
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.1e-22 Score=217.55 Aligned_cols=279 Identities=21% Similarity=0.301 Sum_probs=195.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
|| .||..|+-....+..|+++-+.||||.|||.--++..+. +.. .|+++++|+||..|+.|+.+.++.|+...+
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~ 153 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LAK----KGKRVYIIVPTTTLVRQVYERLKKFAEDAG 153 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HHh----cCCeEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 66 699999999999999999999999999999754433332 222 478999999999999999999999987665
Q ss_pred -CeEEE-EEcCCCHHHHH---HH-HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-----------C
Q 009477 122 -LRISL-LVGGDSMESQF---EE-LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----------G 184 (534)
Q Consensus 122 -l~~~~-~~gg~~~~~~~---~~-~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-----------~ 184 (534)
..+.. +++..+..+.. +. ..++.||+|+|..-|.+.... +.--++++|++|.+|.++.. |
T Consensus 154 ~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kFdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 154 SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKFDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCCCEEEEccHHHHHhccccHHHHHHHcC
Confidence 44444 44443333322 22 235899999999888877765 32347899999999976522 2
Q ss_pred hHHH-----------------------HHHHHHh--------cCCCCcEEEEEeeCCHHH--HHHHHhcCCCCeEEEecc
Q 009477 185 FAEQ-----------------------LHKILGQ--------LSENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDV 231 (534)
Q Consensus 185 ~~~~-----------------------~~~i~~~--------~~~~~q~ll~SAT~~~~~--~~~~~~~l~~~~~i~~~~ 231 (534)
|.+. +.++++. -....+++..|||..+.- ..+.+..++ ..+..
T Consensus 231 f~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~ 306 (1187)
T COG1110 231 FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGS 306 (1187)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCc
Confidence 2221 1111111 112357899999975431 223333332 11111
Q ss_pred ccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcC---hhhHHHHHHHHHHcCCCceeecCCCCHHHHHHH
Q 009477 232 DTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST---KHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308 (534)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t---~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~ 308 (534)
......++...|... .....+..+++.. +...|||++. ++.++++++.|+..|+++..+|+. .+..
T Consensus 307 ~~~~LRNIvD~y~~~---~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~ 375 (1187)
T COG1110 307 GGEGLRNIVDIYVES---ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEA 375 (1187)
T ss_pred cchhhhheeeeeccC---ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhh
Confidence 122223444444444 3444555666554 5689999999 999999999999999999999874 3677
Q ss_pred HHHHhcCCcEEEEEe----CcccccCCCCC-CCEEEEcCCC
Q 009477 309 VSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFP 344 (534)
Q Consensus 309 ~~~F~~g~~~iLI~T----dv~a~GlDip~-v~~VI~~~~p 344 (534)
++.|..|++++||+. .++.||+|+|. +.++|+|+.|
T Consensus 376 le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 376 LEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999999999999987 67899999995 7789999987
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=2e-23 Score=231.27 Aligned_cols=325 Identities=22% Similarity=0.253 Sum_probs=219.0
Q ss_pred CcHHHHHHHHHHhcC---C-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 46 PTPIQRKTMPLILSG---A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~---~-d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
+++.|..++..+... . .++++||||+|||.+.+++++..+.... ....+++++.|++.++.++++.++.+....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-cccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 589999999888763 4 6899999999999999999998877642 2467899999999999999999988665544
Q ss_pred CeEEEEEcCCCHHHHHHHHh---------------CCCCEEEECchHHHHHHHhcCCCCCC-----CeeEEEEcCCCccc
Q 009477 122 LRISLLVGGDSMESQFEELA---------------QNPDIIIATPGRLMHHLSEVEDMSLK-----SVEYVVFDEADCLF 181 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~---------------~~~~IiV~Tp~~l~~~l~~~~~~~l~-----~~~~iViDEah~l~ 181 (534)
+.....+|... ........ .-..+.++||-..+..... ...+. ..+.+||||+|.+.
T Consensus 275 ~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 275 VIGKSLHSSSK-EPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK--GFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccc-chhhhccccccceeEEecccccceeccccccCHhHhhhhhcc--ccchHHHHHHHhhchhhccHHhhc
Confidence 33332333222 21111110 0123444554444332111 11111 23689999999887
Q ss_pred cCChHHHHHHHHHh-cCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccc-cCCCceEEEEEechhhHH--HHHHH
Q 009477 182 GMGFAEQLHKILGQ-LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKH--AALLY 257 (534)
Q Consensus 182 ~~~~~~~~~~i~~~-~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~k~--~~L~~ 257 (534)
+......+..++.. ...+..+|++|||+|+.+.+.....+.+...+....... .................. ..+..
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 66323333333332 234688999999999999998888777655544332110 001111111000000111 23445
Q ss_pred HHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHH----hcCCcEEEEEeCcccccCCCC
Q 009477 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF----RARKTMFLIVTDVAARGIDIP 333 (534)
Q Consensus 258 ~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F----~~g~~~iLI~Tdv~a~GlDip 333 (534)
.+....+.+.+++|.|||...|.++++.|+..+.++..+||.+....|.+.++.. ..++..|+||||+++-|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 5555667899999999999999999999999888899999999999998777754 456788999999999999995
Q ss_pred CCCEEEEcCCCCChhhhHHhhccCCCCC--CcceEEEEeccccHHH
Q 009477 334 LLDNVINWDFPPKPKIFVHRVGRAARAG--RTGTAFSFVTSEDMAY 377 (534)
Q Consensus 334 ~v~~VI~~~~p~s~~~~~qr~GR~gR~g--~~G~~i~~~~~~e~~~ 377 (534)
.+++|-= +......+||+||++|.| ..|.++.+...+..++
T Consensus 512 -fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~ 554 (733)
T COG1203 512 -FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPY 554 (733)
T ss_pred -cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCc
Confidence 5666532 445789999999999999 5677777776654443
No 110
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=9.8e-22 Score=222.11 Aligned_cols=332 Identities=22% Similarity=0.267 Sum_probs=212.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~----~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
+++...+.+...||+ ++|.|.+.++ .+..++++++.|+||+|||++|++|++.... .+.+++|.+||++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----~~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----TEKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----CCCeEEEEeCcHHH
Confidence 345677778888998 8999998665 5556889999999999999999999988655 24689999999999
Q ss_pred HHHHHH-HHHHhhccCC--CeEEEEEcCCCHHH--------------------------H--------------------
Q 009477 106 ALQTLK-FTKELGRYTD--LRISLLVGGDSMES--------------------------Q-------------------- 136 (534)
Q Consensus 106 a~Q~~~-~~~~~~~~~~--l~~~~~~gg~~~~~--------------------------~-------------------- 136 (534)
..|+.. .+..+.+..+ ++++.+.|+.++-- |
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~ 384 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKM 384 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchh
Confidence 999975 5665655443 77777777553310 0
Q ss_pred -H------------------------HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-------C
Q 009477 137 -F------------------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-------G 184 (534)
Q Consensus 137 -~------------------------~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-------~ 184 (534)
+ +.....++|||+...-|++.+.... .-+....++||||||++.+. .
T Consensus 385 ~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 385 FFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred hHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0 0111246899999998888775422 23456689999999987521 0
Q ss_pred h-----HHH----------------------------------------------------------------HHHHHHh
Q 009477 185 F-----AEQ----------------------------------------------------------------LHKILGQ 195 (534)
Q Consensus 185 ~-----~~~----------------------------------------------------------------~~~i~~~ 195 (534)
+ ... +...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 000 0000000
Q ss_pred ---------------------c---------------------------CCCCcEEEEEeeCCH--HHHHHHH-hcCCCC
Q 009477 196 ---------------------L---------------------------SENRQTLLFSATLPS--ALAEFAK-AGLRDP 224 (534)
Q Consensus 196 ---------------------~---------------------------~~~~q~ll~SAT~~~--~~~~~~~-~~l~~~ 224 (534)
. +....++++|||++. +...+.+ .++.+.
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0 112468899999973 2333333 233332
Q ss_pred eEEEeccccccC--CCceEEEEE--ec------hhhHHHHHHHHHHHhcC-CCCeEEEEEcChhhHHHHHHHHHHc----
Q 009477 225 HLVRLDVDTKIS--PDLKLAFFT--LR------QEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (534)
Q Consensus 225 ~~i~~~~~~~~~--~~~~~~~~~--~~------~~~k~~~L~~~l~~~~~-~~~~~IVF~~t~~~~e~l~~~L~~~---- 289 (534)
....+. ..... ... ..++. ++ .+.-...+...+.+... .++++|||++|....+.++..|...
T Consensus 624 ~~~~~~-~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 624 HFNTIE-PTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred ccceec-CCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 222221 11111 111 11111 11 12223344444443322 4578999999999999999998752
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCC--EEEEcCCCCC-h-------------------
Q 009477 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD--NVINWDFPPK-P------------------- 347 (534)
Q Consensus 290 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~--~VI~~~~p~s-~------------------- 347 (534)
++. .+..+.+ ..|..+++.|++++..||+||+.+++|+|+|+.. .||...+|.. +
T Consensus 702 ~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 702 GYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred Cce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 333 2222322 5788899999999999999999999999999866 4777777742 1
Q ss_pred ----------hhhHHhhccCCCCCCcceEEEEeccc
Q 009477 348 ----------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 348 ----------~~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
..+.|.+||.-|...+.-++.+++..
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 11489999999987654455555554
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5.3e-22 Score=215.60 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=116.8
Q ss_pred echhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc
Q 009477 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (534)
Q Consensus 246 ~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv 325 (534)
....+|..++...+......+.++||||+|+..++.++..|...|+++..+|+ .+.+|+..+..|..+...|+|||+|
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 44567899999999877778999999999999999999999999999999997 6889999999999999999999999
Q ss_pred ccccCCCC---CCC-----EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccH
Q 009477 326 AARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (534)
Q Consensus 326 ~a~GlDip---~v~-----~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~ 375 (534)
|+||+||+ .|. +||+++.|.|...|.||.||+||+|.+|.++.|++.+|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 443 459999999999999999999999999999999998763
No 112
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=4.6e-23 Score=213.17 Aligned_cols=309 Identities=18% Similarity=0.271 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hhccCCCe
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLR 123 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~-~~~~~~l~ 123 (534)
++-|.|..||..+-++..+++.|.|.+|||.++-.++...+.. ..||++.+|-.+|..|-++.+.. |+ .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-----c
Confidence 4889999999999999999999999999999998888877764 46899999999999999876544 53 3
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEE
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~l 203 (534)
+++.+|+... .....-+|+|.+-|..++.+ +.--+..+..|||||.|-|-+...+-.+.+-+-.+|.+.+.+
T Consensus 199 VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVTI-------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeecceee-------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 5566776543 24567899999998888876 334478899999999999998776777777777899999999
Q ss_pred EEEeeCCHHHH--HHHHhcCCCCeEEEeccccccCCCceEE---------EEEechh-----hHHH--------------
Q 009477 204 LFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLA---------FFTLRQE-----EKHA-------------- 253 (534)
Q Consensus 204 l~SAT~~~~~~--~~~~~~l~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~-----~k~~-------------- 253 (534)
++|||+|+..+ +|....-..|-.+.... .. +..+++. |..++.. +.+.
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTd-yR-PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTD-YR-PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeec-CC-CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999998743 23222233444333221 11 1122222 2222221 1111
Q ss_pred ---------------------HHHHHHHHhc-CCCCeEEEEEcChhhHHHHHHHHHHcCC--------------------
Q 009477 254 ---------------------ALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGL-------------------- 291 (534)
Q Consensus 254 ---------------------~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~-------------------- 291 (534)
.+..+++... ....++|||+-++++||.++-.+.+..+
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 1222222211 1345899999999999988766654321
Q ss_pred -------------------CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----cC---CC-
Q 009477 292 -------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FP- 344 (534)
Q Consensus 292 -------------------~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~~---~p- 344 (534)
.+.++||++=+--.+-+.=-|.+|-+++|+||...+-|+|.|.-++|.- +| +.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 2568899998888888888899999999999999999999998666652 11 11
Q ss_pred CChhhhHHhhccCCCCCCc--ceEEEEeccc
Q 009477 345 PKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (534)
Q Consensus 345 ~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~ 373 (534)
.+...|+|+.|||||.|.+ |.||.+++..
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCc
Confidence 2566799999999999875 8888888764
No 113
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.90 E-value=5.5e-23 Score=222.46 Aligned_cols=333 Identities=11% Similarity=0.046 Sum_probs=215.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHH----HHHHH
Q 009477 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME----SQFEE 139 (534)
Q Consensus 64 i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~----~~~~~ 139 (534)
+..+.+|||||.+|+-.+-+.+. .|+++|||+|++.|+.|+.+.++.... +-.+..++++.+.. .|...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-----~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-----AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 34444699999999955554444 478899999999999999998887442 24577777766554 44455
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-----cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-----~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~ 214 (534)
..+...|+|||.+.++ .++.++++||+||.|.-+ ...|+.+-..+++....+..+++.|||++ ++
T Consensus 237 ~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS--le 306 (665)
T PRK14873 237 LRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART--AE 306 (665)
T ss_pred hCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC--HH
Confidence 5567899999999998 889999999999999755 22366777777777778999999999965 44
Q ss_pred HHHHhcCCCCeEEEeccccccCCCceEEEEEechh-----------hHHHHHHHHHHHhcCCCCeEEEEEcChhhH----
Q 009477 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-----------EKHAALLYMIREHISSDQQTLIFVSTKHHV---- 279 (534)
Q Consensus 215 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~---- 279 (534)
.+.+..-+....+................+..... .-...+++.+++.+..+ ++|||+|.+..+
T Consensus 307 s~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 307 AQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 45443333333222222211122233333333221 02356788888888888 999999844222
Q ss_pred -------------------------------------------------------HHHHHHHHHc--CCCceeecCCCCH
Q 009477 280 -------------------------------------------------------EFLNVLFREE--GLEPSVCYGDMDQ 302 (534)
Q Consensus 280 -------------------------------------------------------e~l~~~L~~~--~~~~~~l~g~~~~ 302 (534)
|.+.+.|.+. +.++..+.
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d----- 460 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG----- 460 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-----
Confidence 3444444433 22222222
Q ss_pred HHHHHHHHHHhcCCcEEEEEeC----cccccCCCCCCCEEEEcC--C----C---CC---hhhhHHhhccCCCCCCcceE
Q 009477 303 DARKIHVSRFRARKTMFLIVTD----VAARGIDIPLLDNVINWD--F----P---PK---PKIFVHRVGRAARAGRTGTA 366 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~Td----v~a~GlDip~v~~VI~~~--~----p---~s---~~~~~qr~GR~gR~g~~G~~ 366 (534)
++.+++.|. ++.+|||+|+ +++ ++++.|+..| . | .. ...+.|.+||+||+++.|.+
T Consensus 461 --~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 461 --GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred --hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 234788886 5999999999 666 3556655333 2 2 11 23348999999999999999
Q ss_pred EEEeccc----------cHHHHHHHHHHhCCCccCCCChHHHHhhh--hhHHHHHHHH-HhcCCccccCCchhH
Q 009477 367 FSFVTSE----------DMAYLLDLHLFLSKPIRAAPSEEEVLLDM--DGVMSKIDQA-IANGETIYGRFPQTV 427 (534)
Q Consensus 367 i~~~~~~----------e~~~~~~l~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~-~~~~~~~~g~~~~~~ 427 (534)
+....++ |+..|+.-|+..++.+.+||....+.-.. ......+... ..++..++||+|.++
T Consensus 533 ~iq~~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i~~~~~~~~~~~~~~~~~~~~~vlGPvp~~~ 606 (665)
T PRK14873 533 VVVAESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAVDGRPAAVAALLEAAGLPDGAEVLGPVPLPP 606 (665)
T ss_pred EEEeCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEEEEcHHHHHHHHHHhcCCCCCEEECCcCCcc
Confidence 8765443 44567777788888888998654322111 1111111111 134567999998874
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=2.7e-21 Score=210.00 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccc
Q 009477 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (534)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~ 328 (534)
..+.+.|+..+......+.++||||+|+..++.+++.|...|+++..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 45677888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcC-----CCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 329 GIDIPLLDNVINWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 329 GlDip~v~~VI~~~-----~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
|+|+|.+++||++| +|.+...|+||+||+||. ..|.++.|++..+......+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999998 899999999999999998 68999999997665444333
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.1e-20 Score=200.08 Aligned_cols=319 Identities=21% Similarity=0.198 Sum_probs=231.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |++.|.-+.-.++.| -|+...||+|||++..+|++.... .|..|.|++|+--||.|-++++..+....
T Consensus 75 lg~r-~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL-----~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYAL-----QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCCC-cchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHH-----cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4665 999999988888877 488999999999999999887654 46789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-c-----------
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------- 182 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~----------- 182 (534)
|++++++.++.+..+.... -.+||+++|.+.| ++.+..+ .......+.+.|+||+|.++ +
T Consensus 147 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 9999999987765544333 4689999999765 3333321 11224567899999999765 0
Q ss_pred ---CChHHHHHHHHHhcCC-------------------------------------------------------------
Q 009477 183 ---MGFAEQLHKILGQLSE------------------------------------------------------------- 198 (534)
Q Consensus 183 ---~~~~~~~~~i~~~~~~------------------------------------------------------------- 198 (534)
......+..+...+.+
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 0011111111111100
Q ss_pred ---------------------------------------------------------CCcEEEEEeeCCHHHHHHHHhcC
Q 009477 199 ---------------------------------------------------------NRQTLLFSATLPSALAEFAKAGL 221 (534)
Q Consensus 199 ---------------------------------------------------------~~q~ll~SAT~~~~~~~~~~~~l 221 (534)
-..+.+||+|...+..+|.+.|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 01356777777666666666554
Q ss_pred CCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCC
Q 009477 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (534)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~ 301 (534)
-+ .+.++...+....-....+.....+|..+++..+.+....+.++||.+.|....+.++..|.+.|+++.+++..-.
T Consensus 385 l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 385 LG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred Cc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 33 3333333221111111233445677899999999888889999999999999999999999999999999988744
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEeCcccccCCCCCC---------------CEEEEcCCCCChhhhHHhhccCCCCCCcce
Q 009477 302 QDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL---------------DNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (534)
Q Consensus 302 ~~~r~~~~~~F~~g~-~~iLI~Tdv~a~GlDip~v---------------~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~ 365 (534)
..+-+.+-+ .|+ -.|.|||.||+||.||.-- -|||....|.|...--|..||+||.|.+|.
T Consensus 463 ~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 433222222 343 4599999999999999732 379999999999999999999999999999
Q ss_pred EEEEecccc
Q 009477 366 AFSFVTSED 374 (534)
Q Consensus 366 ~i~~~~~~e 374 (534)
+-.|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999988665
No 116
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=3.5e-20 Score=201.60 Aligned_cols=318 Identities=18% Similarity=0.161 Sum_probs=226.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhhccCCCeE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRI 124 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~~~~~~l~~ 124 (534)
-+..++..+..+.+++-+++.|.||+|||.-.---+++...... ...++++--|.|--|.-+++.+ ++-+...+-.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 46778888899989999999999999999965555566554443 4667899999998888888743 44555556566
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTL 203 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~l 203 (534)
+.-++..+.. ...+.+.+||.|-|++.+.. ...+.++..||+||+|+=. +.+|.--+.+.+-...+..+++
T Consensus 252 GYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 252 GYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred eEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 6665544322 23478999999999999975 5678999999999999543 5566655555555556789999
Q ss_pred EEEeeCCHHHHHHHHhcCCCCeEEEeccccccCC----------------CceEE------------EEEechhhHHHHH
Q 009477 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP----------------DLKLA------------FFTLRQEEKHAAL 255 (534)
Q Consensus 204 l~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~----------------~~~~~------------~~~~~~~~k~~~L 255 (534)
|||||+..+ ..+.|++....+.+........ ..... ......+.....+
T Consensus 324 LMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 324 LMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred EeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 999998733 4455555555555542221100 00000 0000011122222
Q ss_pred HHHHHHhc--CCCCeEEEEEcChhhHHHHHHHHHHc-------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc
Q 009477 256 LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (534)
Q Consensus 256 ~~~l~~~~--~~~~~~IVF~~t~~~~e~l~~~L~~~-------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~ 326 (534)
..++.... ...+.+|||.+....+..+++.|... .+-+..+|+.|+..+++.++...-.|..+|+++|.+|
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 22222211 34678999999999999999999752 2456789999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcC--------CCC----------ChhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 327 ARGIDIPLLDNVINWD--------FPP----------KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 327 a~GlDip~v~~VI~~~--------~p~----------s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
+.+|.|+++-+||+.+ .-. +...-.||.|||||. ++|.||.+++...+..
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 9999999999999544 322 334459999999997 7899999999875443
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=2.1e-20 Score=205.22 Aligned_cols=312 Identities=20% Similarity=0.187 Sum_probs=187.9
Q ss_pred CcHHHHHHHHHHhc----------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 46 PTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 46 ~~~~Q~~ai~~il~----------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
++++|..|+..+.. .+..++..+||||||.+.+..+...+ .. ..+.++|||+|+++|..|+.+.+..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 78899999976532 24699999999999988765554333 21 2457899999999999999999988
Q ss_pred hhccCCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHh-cCCCCCCCe-eEEEEcCCCccccCChHHHHHHH
Q 009477 116 LGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSE-VEDMSLKSV-EYVVFDEADCLFGMGFAEQLHKI 192 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~-~~~~~l~~~-~~iViDEah~l~~~~~~~~~~~i 192 (534)
++... ..+..+.......+. ....|+|+|...+...+.. ...++...- .+||+||||+.....+. ..
T Consensus 316 ~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~----~~ 385 (667)
T TIGR00348 316 LQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA----KN 385 (667)
T ss_pred hCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH----HH
Confidence 76321 111122333333333 2468999999999764332 111222111 28999999996543333 33
Q ss_pred H-HhcCCCCcEEEEEeeCCHHHH-HHHHhcC--CCCeEEEeccccccCCCceE--EEEEech-----hh-----------
Q 009477 193 L-GQLSENRQTLLFSATLPSALA-EFAKAGL--RDPHLVRLDVDTKISPDLKL--AFFTLRQ-----EE----------- 250 (534)
Q Consensus 193 ~-~~~~~~~q~ll~SAT~~~~~~-~~~~~~l--~~~~~i~~~~~~~~~~~~~~--~~~~~~~-----~~----------- 250 (534)
+ ..+| +...++|||||-..-. .-...+. ..+................. .|..... .+
T Consensus 386 l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 386 LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 3 3444 5789999999843211 0011111 11222233222222222111 1111000 00
Q ss_pred -----------------------------HHHHHHHHHHHh-----cCCCCeEEEEEcChhhHHHHHHHHHHc-----CC
Q 009477 251 -----------------------------KHAALLYMIREH-----ISSDQQTLIFVSTKHHVEFLNVLFREE-----GL 291 (534)
Q Consensus 251 -----------------------------k~~~L~~~l~~~-----~~~~~~~IVF~~t~~~~e~l~~~L~~~-----~~ 291 (534)
....+...+.++ ...+.+++|||.++.+|..+++.|.+. +.
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 001111111111 123589999999999999999888664 23
Q ss_pred CceeecCCCCHH---------------------HHHHHHHHHhc-CCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhh
Q 009477 292 EPSVCYGDMDQD---------------------ARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (534)
Q Consensus 292 ~~~~l~g~~~~~---------------------~r~~~~~~F~~-g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~ 349 (534)
...+++++.+.+ ..+.++++|++ +..+|||++|++..|+|.|.+++++...+ .....
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp-lk~h~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP-LKYHG 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc-ccccH
Confidence 344555543222 22467889976 67899999999999999999998887664 44456
Q ss_pred hHHhhccCCCC-C--C-cceEEEEecc
Q 009477 350 FVHRVGRAARA-G--R-TGTAFSFVTS 372 (534)
Q Consensus 350 ~~qr~GR~gR~-g--~-~G~~i~~~~~ 372 (534)
++|.+||+.|. + + .|.++-|+..
T Consensus 624 LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 624 LLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred HHHHHHHhccccCCCCCCEEEEECcCh
Confidence 89999999993 2 2 2566666554
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=3.1e-20 Score=203.11 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccc
Q 009477 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (534)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~ 328 (534)
..+...|+..+......+.++||||+|+..++.+++.|...|+++..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 34567788888877778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCC-----CCChhhhHHhhccCCCCCCcceEEEEecc---------ccHHHHHHHHHHhCCCccCCCC
Q 009477 329 GIDIPLLDNVINWDF-----PPKPKIFVHRVGRAARAGRTGTAFSFVTS---------EDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 329 GlDip~v~~VI~~~~-----p~s~~~~~qr~GR~gR~g~~G~~i~~~~~---------~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
|+|+|.+++||++|. |.+...|+||+||+||. ..|.+++|++. .|...+.+++..++......|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999998884 78999999999999996 78999999984 4667777888888877766653
No 119
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-20 Score=195.11 Aligned_cols=305 Identities=22% Similarity=0.283 Sum_probs=200.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC---CCCeEEEEEcCcHHHHHHHHHH-HHHhhccCCCeEEE
Q 009477 51 RKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRALILSPTRDLALQTLKF-TKELGRYTDLRISL 126 (534)
Q Consensus 51 ~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~---~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~~l~~~~ 126 (534)
++++..|..+.-+|++|.||||||. .+|-+-.-..... ..+.-+-|--|.|.-|..+++. ..+++. .+-.|+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeE
Confidence 3466777777779999999999998 5554433221111 1122467788999999888874 445554 3444444
Q ss_pred EEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-cC----ChHHHHHHHHHhcCC---
Q 009477 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GM----GFAEQLHKILGQLSE--- 198 (534)
Q Consensus 127 ~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-~~----~~~~~~~~i~~~~~~--- 198 (534)
.+--+. .....+.|.++|.|-|+..+.. ++.|..++.||+||||+-+ +. |...++..+.+.+..
T Consensus 339 qIRfd~------ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 339 QIRFDG------TIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEEecc------ccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 432111 1234678999999999999985 6889999999999999644 21 344555555555444
Q ss_pred ---CCcEEEEEeeCCHHHHHHH--Hh-cCCCCeEEEeccccccCCCceEEEEEechhhHHH-HHHH--HHHHhcCCCCeE
Q 009477 199 ---NRQTLLFSATLPSALAEFA--KA-GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLY--MIREHISSDQQT 269 (534)
Q Consensus 199 ---~~q~ll~SAT~~~~~~~~~--~~-~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~--~l~~~~~~~~~~ 269 (534)
..++++||||+- +.+|. +. +-..|.++.++.+.- .+...|-.-.+.+-.+ +... .+.+.+ +.+.+
T Consensus 411 ~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf---PVsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~I 484 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF---PVSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGGI 484 (1172)
T ss_pred ccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC---ceEEEeccCCCchHHHHHHHHHHHHhhcC-CCCcE
Confidence 567899999973 23333 11 222344666655432 1223332222222111 1111 122222 57889
Q ss_pred EEEEcChhhHHHHHHHHHHcC-----------------------------------------------------------
Q 009477 270 LIFVSTKHHVEFLNVLFREEG----------------------------------------------------------- 290 (534)
Q Consensus 270 IVF~~t~~~~e~l~~~L~~~~----------------------------------------------------------- 290 (534)
|||+...++++++++.|++..
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 999999999999998887620
Q ss_pred ----------------------------------------CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 291 ----------------------------------------LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 291 ----------------------------------------~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
+-+..+|+-++..++.++++.--.|..-++|+|.||+..+
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 0044566667777777777777788888999999999999
Q ss_pred CCCCCCEEEEcCC--------CCCh----------hhhHHhhccCCCCCCcceEEEEeccc
Q 009477 331 DIPLLDNVINWDF--------PPKP----------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 331 Dip~v~~VI~~~~--------p~s~----------~~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
.||++.+||..+. -... ..--||+|||||.| +|.||-+++..
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999996553 2222 33389999999987 69999999864
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.7e-19 Score=194.13 Aligned_cols=317 Identities=21% Similarity=0.260 Sum_probs=224.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |++.|--.-=.+ .+.-|+...||+|||+++.+|++-... .|..|-|++|+--||.|-++++..+....
T Consensus 79 lGm~-~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al-----~G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGMR-HFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNAL-----SGKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCCC-cchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3644 778887554444 345799999999999999999886554 46789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcCCCC-------CCCeeEEEEcCCCccc-c---------
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMS-------LKSVEYVVFDEADCLF-G--------- 182 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~~~-------l~~~~~iViDEah~l~-~--------- 182 (534)
|++++++.++....+.... -.++|++||..-| +++|.. .+. ...+.++|+||+|.++ +
T Consensus 151 Gl~v~~i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD--~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRD--NMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred CCEEEEECCCCCHHHHHHH--hcCCEEEEcccccccchhhc--cceechhhhcccccceeEechhhheeccccCCceeec
Confidence 9999999887765554433 3489999999886 455543 222 3788999999999875 0
Q ss_pred -C-----ChHHHHHHHHHhcCC----------------------------------------------------------
Q 009477 183 -M-----GFAEQLHKILGQLSE---------------------------------------------------------- 198 (534)
Q Consensus 183 -~-----~~~~~~~~i~~~~~~---------------------------------------------------------- 198 (534)
. .....+..++..+..
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 0 011111111111100
Q ss_pred -------------------------------------------------------------C----------------Cc
Q 009477 199 -------------------------------------------------------------N----------------RQ 201 (534)
Q Consensus 199 -------------------------------------------------------------~----------------~q 201 (534)
. .+
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 0 13
Q ss_pred EEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHH
Q 009477 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (534)
Q Consensus 202 ~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~ 281 (534)
+-+||+|...+-.+|...|--+ .+.++...+....-....+.....+|..+++..+......+.++||-+.|....|.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLD--VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCC--EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 4456666655555555554332 23333222111111111234456789999999999888899999999999999999
Q ss_pred HHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-cEEEEEeCcccccCCCC---------------------------
Q 009477 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIP--------------------------- 333 (534)
Q Consensus 282 l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~-~~iLI~Tdv~a~GlDip--------------------------- 333 (534)
++..|...|++..+++......+-+.+- +.|+ -.|.|||.||+||-||.
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999988888764433333332 3443 46999999999999995
Q ss_pred ----------CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 334 ----------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 334 ----------~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
+=-+||--..|.|...=-|..||+||.|.+|.+-.|++-+|
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22368988999999999999999999999999998888654
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=1.3e-20 Score=199.20 Aligned_cols=296 Identities=19% Similarity=0.234 Sum_probs=197.9
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 44 KVPTPIQRKTMPLIL----SGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il----~~~-d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
..|+.+|..||..+. +|+ .+++...||+|||.+++. ++.+|.+.. .-+++|+|+-+..|+.|.+..+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcc--hhheeeEEechHHHHHHHHHHHHHhCC
Confidence 358999999996554 454 388888899999998654 444555442 346899999999999999988887754
Q ss_pred cC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc----CCCCCCCeeEEEEcCCCccccCChHHHHHHHH
Q 009477 119 YT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (534)
Q Consensus 119 ~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~----~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~ 193 (534)
.. .+....-..+. ..++|.|+|+.++...+... ..+....+++||+||||| |.......|+
T Consensus 241 ~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~ 306 (875)
T COG4096 241 FGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSIL 306 (875)
T ss_pred CccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHH
Confidence 32 12221111111 24789999999998877642 234556699999999999 5566667888
Q ss_pred HhcCCCCcEEEEEeeCCHHHHH-------------------HHHhcCCCCeEEEecccccc----CCCc-----------
Q 009477 194 GQLSENRQTLLFSATLPSALAE-------------------FAKAGLRDPHLVRLDVDTKI----SPDL----------- 239 (534)
Q Consensus 194 ~~~~~~~q~ll~SAT~~~~~~~-------------------~~~~~l~~~~~i~~~~~~~~----~~~~----------- 239 (534)
..+..-.+ +++|||...+.. ....++..+..+.++.+... ....
T Consensus 307 dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 88764443 339998653221 11223333444444322110 0000
Q ss_pred ---eEEEEEec------hhhHHHHHHHHHHHhcCC------CCeEEEEEcChhhHHHHHHHHHHc-----CCCceeecCC
Q 009477 240 ---KLAFFTLR------QEEKHAALLYMIREHISS------DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGD 299 (534)
Q Consensus 240 ---~~~~~~~~------~~~k~~~L~~~l~~~~~~------~~~~IVF~~t~~~~e~l~~~L~~~-----~~~~~~l~g~ 299 (534)
.+.|-... -......+...+.+.+.+ -++|||||.+..||+++.+.|... |--+..+.|+
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 01111100 011334555555555444 468999999999999999999865 2336677887
Q ss_pred CCHHHHHHHHHHHhcCC--cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCC
Q 009477 300 MDQDARKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (534)
Q Consensus 300 ~~~~~r~~~~~~F~~g~--~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~ 360 (534)
-.+.++. ++.|...+ -+|.|+.|++..|+|+|.|.+++.+..-.|...|.|++||.-|.
T Consensus 465 ~~~~q~~--Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQAQAL--IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred chhhHHH--HHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 6665543 56666533 46888889999999999999999999999999999999999995
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=9.5e-20 Score=183.38 Aligned_cols=166 Identities=21% Similarity=0.289 Sum_probs=131.1
Q ss_pred CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhh
Q 009477 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH 278 (534)
Q Consensus 199 ~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~ 278 (534)
..|+++.||||.+.- +.... ++...-.+.......|.+. .-+.....+.|+.-++.....+++++|-+=|++.
T Consensus 386 ~~q~i~VSATPg~~E--~e~s~-~~vveQiIRPTGLlDP~ie----vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYE--LEQSG-GNVVEQIIRPTGLLDPEIE----VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHH--HHhcc-CceeEEeecCCCCCCCcee----eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 469999999986542 22221 1111111122222222222 2233456788899998888899999999999999
Q ss_pred HHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcC-----CCCChhhhHHh
Q 009477 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD-----FPPKPKIFVHR 353 (534)
Q Consensus 279 ~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~-----~p~s~~~~~qr 353 (534)
+|.+.++|.+.|+++.++|++.+.-+|.+++.+.|.|..+|||+-..+-+|+|+|.|.+|...| +..|....+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988766 55688899999
Q ss_pred hccCCCCCCcceEEEEecc
Q 009477 354 VGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 354 ~GR~gR~g~~G~~i~~~~~ 372 (534)
+|||+|. -.|.++.+...
T Consensus 539 IGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHhhc-cCCeEEEEchh
Confidence 9999996 45999988764
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=3.8e-20 Score=172.89 Aligned_cols=186 Identities=40% Similarity=0.607 Sum_probs=153.1
Q ss_pred HCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 40 RKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
..++..|+++|.++++.+..+ +.+++.++||||||.++..++++.+... ...+++|++|++.++.|+.+.+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 457888999999999999998 9999999999999999999988887654 245799999999999999999888776
Q ss_pred cCCCeEEEEEcCCCHHHHHHHHhCCC-CEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 119 YTDLRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~~~~~~-~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
..........++......+..+..+. +++++|++++.+.+.. .......++++|+||+|.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 55534555555555455555555555 9999999999998876 335677889999999999987668888889998888
Q ss_pred CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEe
Q 009477 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (534)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~ 229 (534)
...+++++|||+++........+..+...+..
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 88999999999999988888888876555443
No 124
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=3.2e-19 Score=199.16 Aligned_cols=320 Identities=19% Similarity=0.246 Sum_probs=204.7
Q ss_pred HHHCCCCCCcHHHHHHHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH-HH
Q 009477 38 IKRKGYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL-KF 112 (534)
Q Consensus 38 l~~~g~~~~~~~Q~~ai~~----il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~-~~ 112 (534)
+...||+ +++.|.+-... +..++.+++.|+||+|||++|++|++... .+++++|++||++|+.|+. +.
T Consensus 239 ~~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 239 IALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred hccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHHH
Confidence 3345776 99999984433 33467899999999999999999988753 2578999999999999995 67
Q ss_pred HHHhhccCCCeEEEEEcCCCHHHH-----------------------------------------------HHH------
Q 009477 113 TKELGRYTDLRISLLVGGDSMESQ-----------------------------------------------FEE------ 139 (534)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~~~-----------------------------------------------~~~------ 139 (534)
+..+++..++++..+.|+.++--. |..
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 888888788888887776433100 010
Q ss_pred ------------------HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-----h-------HH--
Q 009477 140 ------------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----F-------AE-- 187 (534)
Q Consensus 140 ------------------~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-----~-------~~-- 187 (534)
-....+|+|+...-|+..+... -.+...+++||||||++.+.. . ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~--~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDD--KDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhc--cCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 1124689999999888776542 236789999999999875210 0 00
Q ss_pred --------------------------------------------HH---------------HHHHHh-------------
Q 009477 188 --------------------------------------------QL---------------HKILGQ------------- 195 (534)
Q Consensus 188 --------------------------------------------~~---------------~~i~~~------------- 195 (534)
.+ ..++..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 00 000000
Q ss_pred --------------------cCCCCcEEEEEeeCC--HHHHHHHH-hcCCCCeEEEeccccccCCCceEEEE--Eec---
Q 009477 196 --------------------LSENRQTLLFSATLP--SALAEFAK-AGLRDPHLVRLDVDTKISPDLKLAFF--TLR--- 247 (534)
Q Consensus 196 --------------------~~~~~q~ll~SAT~~--~~~~~~~~-~~l~~~~~i~~~~~~~~~~~~~~~~~--~~~--- 247 (534)
++....++++|||++ +... +.+ .++.......++.. . ..-...++ .++
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~--~-~~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKD--K-KQDQLVVVDQDMPLVT 625 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCCC--h-HHccEEEeCCCCCCCC
Confidence 011236789999995 3332 433 23322222222110 0 01111111 111
Q ss_pred ---hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC
Q 009477 248 ---QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (534)
Q Consensus 248 ---~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td 324 (534)
.+.-...+...+......+++++|+++|....+.+++.|......+ ...|... .+..++++|++++..||++|+
T Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 1223345555555544567899999999999999999997664444 3334221 356689999999899999999
Q ss_pred cccccCCCCC--CCEEEEcCCCCC-h-----------------------------hhhHHhhccCCCCCCcceEEEEecc
Q 009477 325 VAARGIDIPL--LDNVINWDFPPK-P-----------------------------KIFVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 325 v~a~GlDip~--v~~VI~~~~p~s-~-----------------------------~~~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
...+|+|+|+ ...||...+|.. | ..+.|.+||.-|...+--++.++++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 9999999984 455677777732 2 1148999999998654334555554
Q ss_pred c
Q 009477 373 E 373 (534)
Q Consensus 373 ~ 373 (534)
.
T Consensus 783 R 783 (820)
T PRK07246 783 R 783 (820)
T ss_pred c
Confidence 4
No 125
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.86 E-value=6.7e-20 Score=190.70 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=225.4
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.++++|.+.+..+. .|-++|+....|-|||.-. |.++..+......+|+ .||+||-..|.. |.+.+++|+ .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GP-fLVi~P~StL~N-W~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGP-FLVIAPKSTLDN-WMNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCC-eEEEeeHhhHHH-HHHHHHHhC--C
Confidence 58999999998765 3678999999999999753 3444445443334565 899999877754 566677776 5
Q ss_pred CCeEEEEEcCCCHHHHHH---HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 121 DLRISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~---~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
++++.+++|+........ ......+|+|+|++..+.--.- +.--++.|+|||||||+-+. ...+..+++.+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRIKNE--KSKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhhcch--hhHHHHHHHHhc
Confidence 689999998764332221 2234789999999988765322 33447899999999999885 356667777776
Q ss_pred CCCcEEEEEeeCCH-H---------------------HHHHHH-------------------------------hcCCCC
Q 009477 198 ENRQTLLFSATLPS-A---------------------LAEFAK-------------------------------AGLRDP 224 (534)
Q Consensus 198 ~~~q~ll~SAT~~~-~---------------------~~~~~~-------------------------------~~l~~~ 224 (534)
... .+|+|+||-. + ...++. ..+...
T Consensus 317 ~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred ccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 443 5888899711 0 000000 001111
Q ss_pred eEEEecc-----------------------cc---------------------------ccCCCceEEEEEechhhHHHH
Q 009477 225 HLVRLDV-----------------------DT---------------------------KISPDLKLAFFTLRQEEKHAA 254 (534)
Q Consensus 225 ~~i~~~~-----------------------~~---------------------------~~~~~~~~~~~~~~~~~k~~~ 254 (534)
..+.+-. .. .+.+.....--.+....|+..
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 1111100 00 000000000001112235666
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC---cEEEEEeCcccccCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGID 331 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~---~~iLI~Tdv~a~GlD 331 (534)
|-.+|......+.+||||..-....+-+.+++.-+++....++|+++.++|...++.|.... .-.|++|.+.+-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 66777777778999999999888899999999899999999999999999999999998755 345789999999999
Q ss_pred CCCCCEEEEcCCCCChhhhHHhhccCCCCCCc--ceEEEEeccccH
Q 009477 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (534)
Q Consensus 332 ip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~e~ 375 (534)
+...+.||.||.-|+|..-.|...||+|.|+. -.+|-+++.+-+
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 99999999999999999999999999999986 566788887754
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=9e-18 Score=180.52 Aligned_cols=319 Identities=19% Similarity=0.214 Sum_probs=225.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |++.|.-.-=.+..| -|+...||-|||++..+|++-... .|+.|-|++..--||.-=++++..+-.+.
T Consensus 75 lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-----~GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-----TGKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-----cCCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 3665 888998776555555 589999999999999999865433 36678899999999998888888888889
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-c----------C
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------M 183 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~----------~ 183 (534)
|+.++++..+....+... .-.+||+++|...| ++.|..+ ...-...+.+.|+||+|.++ + .
T Consensus 147 GLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 999999988765554333 34689999999876 4455431 11124567899999999765 0 0
Q ss_pred -----ChHHHHHHHHHhcCC------------------------------------------------------------
Q 009477 184 -----GFAEQLHKILGQLSE------------------------------------------------------------ 198 (534)
Q Consensus 184 -----~~~~~~~~i~~~~~~------------------------------------------------------------ 198 (534)
.+...+..++..+..
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 011122222221110
Q ss_pred --------------------------------------------------------CCcEEEEEeeCCHHHHHHHHhcCC
Q 009477 199 --------------------------------------------------------NRQTLLFSATLPSALAEFAKAGLR 222 (534)
Q Consensus 199 --------------------------------------------------------~~q~ll~SAT~~~~~~~~~~~~l~ 222 (534)
-.++.+||+|...+-.+|.+.|--
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 013456677765555566655433
Q ss_pred CCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCH
Q 009477 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (534)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~ 302 (534)
..+.++...+....-....+......|..+++..+.+....+.++||.|.|....+.++..|...|++..+++....
T Consensus 385 --~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 385 --RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred --CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 23333332211110011123445678888999988887788999999999999999999999999999999987643
Q ss_pred HHHHHHHHHHhcCC-cEEEEEeCcccccCCCCCCC--------EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc
Q 009477 303 DARKIHVSRFRARK-TMFLIVTDVAARGIDIPLLD--------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 303 ~~r~~~~~~F~~g~-~~iLI~Tdv~a~GlDip~v~--------~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
+++..+-. +.|+ -.|.|||.||+||.||.--. |||....|.|...--|..||+||.|.+|.+-.|++-+
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33322222 4453 56999999999999997433 8999999999999999999999999999998888865
Q ss_pred c
Q 009477 374 D 374 (534)
Q Consensus 374 e 374 (534)
|
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 4
No 127
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=3.1e-18 Score=179.31 Aligned_cols=319 Identities=21% Similarity=0.275 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.+.|+|++.+..+.+ +...|+-...|-|||.-.+ ..+..+.....-. ..+|||||. .+..||.+.++.+. .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~-~paLIVCP~-Tii~qW~~E~~~w~--p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLT-KPALIVCPA-TIIHQWMKEFQTWW--P 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhccccc-CceEEEccH-HHHHHHHHHHHHhC--c
Confidence 468999999987764 5668999999999996322 1111222111112 459999997 67889888888876 4
Q ss_pred CCeEEEEEcCCCHH--------HHH-----HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHH
Q 009477 121 DLRISLLVGGDSME--------SQF-----EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (534)
Q Consensus 121 ~l~~~~~~gg~~~~--------~~~-----~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~ 187 (534)
.+++..++|..+.. ... +....+..|+|+|++.+.-.- ..+.-..++++|+||.|++-+.. .
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---d~l~~~~W~y~ILDEGH~IrNpn--s 354 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---DDLLGILWDYVILDEGHRIRNPN--S 354 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---cccccccccEEEecCcccccCCc--c
Confidence 57888888765520 111 111235679999998765221 22444578999999999998864 4
Q ss_pred HHHHHHHhcCCCCcEEEEEeeC-CHHHHHHHH------------------------------------------------
Q 009477 188 QLHKILGQLSENRQTLLFSATL-PSALAEFAK------------------------------------------------ 218 (534)
Q Consensus 188 ~~~~i~~~~~~~~q~ll~SAT~-~~~~~~~~~------------------------------------------------ 218 (534)
++...+..++ ..+.+.+|+|| -+.+.++.+
T Consensus 355 ~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 355 KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 4455555554 34456677775 111111110
Q ss_pred ----h-------------cCCC-C---eEEEec-------------------------------cccc--cCCCceE---
Q 009477 219 ----A-------------GLRD-P---HLVRLD-------------------------------VDTK--ISPDLKL--- 241 (534)
Q Consensus 219 ----~-------------~l~~-~---~~i~~~-------------------------------~~~~--~~~~~~~--- 241 (534)
. .|.. . .++.+. .-.+ .-|.+-.
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 0 0000 0 000000 0000 0000000
Q ss_pred -------EE-EEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHH-HcCCCceeecCCCCHHHHHHHHHHH
Q 009477 242 -------AF-FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHVSRF 312 (534)
Q Consensus 242 -------~~-~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~-~~~~~~~~l~g~~~~~~r~~~~~~F 312 (534)
.+ -......|+..+..++......+.++|+|..|+.....+...|. ..||....+.|..+...|...+++|
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 00 11222347888888998888899999999999999999999998 5799999999999999999999999
Q ss_pred hcCCc-E-EEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcc--eEEEEecccc
Q 009477 313 RARKT-M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (534)
Q Consensus 313 ~~g~~-~-iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G--~~i~~~~~~e 374 (534)
.+++. . .|++|.+.+-|+|+.+.+-||.||+-|+|.+=.|..-|+-|.|++- .+|-+++..-
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 98874 3 4789999999999999999999999999999999999999999863 4567777653
No 128
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=7.3e-19 Score=175.07 Aligned_cols=309 Identities=16% Similarity=0.195 Sum_probs=212.7
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 44 KVPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~---~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.+++|+|.+++..+..+ +..|+..|+|+|||++-+-++. .-.+++||||.+-.-+.||...++.++...
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~--------tikK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC--------TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee--------eecccEEEEecCccCHHHHHHHHHhhcccC
Confidence 36899999999887753 6799999999999987542211 124679999999999999999999988766
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHh-------cCCCCCCCeeEEEEcCCCccccCChHHHHHHHH
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-------~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~ 193 (534)
+-.++..+.+... ....++.|+|+|+.++.+.-.+ |..+.-..++++++||+|-+-..-|...+.-+-
T Consensus 373 d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~ 447 (776)
T KOG1123|consen 373 DDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQ 447 (776)
T ss_pred ccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHH
Confidence 6667777664321 1246889999999887532211 112334578999999999876655555555444
Q ss_pred HhcCCCCcEEEEEeeCCHHHHHHHHh-cCCCCeEEE--------------ecccccc-------------CCCceEEEEE
Q 009477 194 GQLSENRQTLLFSATLPSALAEFAKA-GLRDPHLVR--------------LDVDTKI-------------SPDLKLAFFT 245 (534)
Q Consensus 194 ~~~~~~~q~ll~SAT~~~~~~~~~~~-~l~~~~~i~--------------~~~~~~~-------------~~~~~~~~~~ 245 (534)
.+.. ++++||+-.+-..+... ++-.|.++. +.-.+.+ ...-+.....
T Consensus 448 aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLy 522 (776)
T KOG1123|consen 448 AHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLY 522 (776)
T ss_pred HHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheee
Confidence 3332 89999984332111110 111121111 1100000 1111223344
Q ss_pred echhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEEEEEeC
Q 009477 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTD 324 (534)
Q Consensus 246 ~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~iLI~Td 324 (534)
+....|+.+...+++-+-..+.++|||..+.-.....+-.|. --.+||..+|.+|.++++.|+.+ +++-++.+.
T Consensus 523 vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 555678888878887766689999999988766665555543 24799999999999999999865 578889999
Q ss_pred cccccCCCCCCCEEEEcCCCC-ChhhhHHhhccCCCCCCc------ceEEEEeccccH
Q 009477 325 VAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRT------GTAFSFVTSEDM 375 (534)
Q Consensus 325 v~a~GlDip~v~~VI~~~~p~-s~~~~~qr~GR~gR~g~~------G~~i~~~~~~e~ 375 (534)
|+...+|+|..+++|+..... |-..=.||.||.-|+.+. ...|++++.+-.
T Consensus 598 VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 999999999999999877654 455668999999998542 244778877643
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=1.5e-16 Score=172.31 Aligned_cols=279 Identities=20% Similarity=0.194 Sum_probs=189.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|+. |++.|.-+.=.+ .+.-|+...||.|||+++.+|++-... .|..|-|++++..||.+-++++..+-++.
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL-----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh-----cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 4766 888887665333 456899999999999999999864433 36679999999999999999999998999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-c----------C
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------M 183 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~----------~ 183 (534)
|+.++++.++.+..+... .-.++|+++|...| ++.+..+ .......+.+.|+||+|.++ + .
T Consensus 145 GLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 999999988776655433 35689999999755 3444321 11124568899999999765 0 0
Q ss_pred -----ChHHHHHHHHHhcCC------------------------------------------------------------
Q 009477 184 -----GFAEQLHKILGQLSE------------------------------------------------------------ 198 (534)
Q Consensus 184 -----~~~~~~~~i~~~~~~------------------------------------------------------------ 198 (534)
........+...+..
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 011111111111100
Q ss_pred --------------------------------------------------------CCcEEEEEeeCCHHHHHHHHhcCC
Q 009477 199 --------------------------------------------------------NRQTLLFSATLPSALAEFAKAGLR 222 (534)
Q Consensus 199 --------------------------------------------------------~~q~ll~SAT~~~~~~~~~~~~l~ 222 (534)
-..+.+||+|...+-.+|...|--
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l 382 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL 382 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC
Confidence 014567777776665566555533
Q ss_pred CCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCH
Q 009477 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (534)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~ 302 (534)
..+.++...+....-....+.....+|..+++..+.+....+.++||-|.|....|.++..|...|++..+++....+
T Consensus 383 --~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 --EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred --CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 233333322211111112334455678888888888888899999999999999999999999999999999986432
Q ss_pred HHHH-HHHHHHhcCC-cEEEEEeCcccccCCCC
Q 009477 303 DARK-IHVSRFRARK-TMFLIVTDVAARGIDIP 333 (534)
Q Consensus 303 ~~r~-~~~~~F~~g~-~~iLI~Tdv~a~GlDip 333 (534)
.+++ .++.. .|+ -.|.|||.||+||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2222 23322 343 46999999999999975
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=6e-20 Score=192.62 Aligned_cols=328 Identities=21% Similarity=0.265 Sum_probs=193.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 33 NVFRAIKRKGYKVPTPIQRKTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 33 ~l~~~l~~~g~~~~~~~Q~~ai~~il~~-----~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
++...+.-+.-..|+|+|+.|+....+| |.-++|| +|+|||+..+ ++.+... ..++|+|+|++.|..
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsL-----kisEala--~~~iL~LvPSIsLLs 220 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSL-----KISEALA--AARILFLVPSISLLS 220 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHH-----HHHHHHh--hhheEeecchHHHHH
Confidence 4444454445567999999999998875 3456666 8999999877 3333221 267999999999999
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCCHHH--------------------HH-----HHHhCCCCEEEECchHHHHHHHhcC
Q 009477 108 QTLKFTKELGRYTDLRISLLVGGDSMES--------------------QF-----EELAQNPDIIIATPGRLMHHLSEVE 162 (534)
Q Consensus 108 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~--------------------~~-----~~~~~~~~IiV~Tp~~l~~~l~~~~ 162 (534)
|+.+....- +...++...+.++..... -. .....+--|+++|+..+...-+- .
T Consensus 221 QTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Q 298 (1518)
T COG4889 221 QTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-Q 298 (1518)
T ss_pred HHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-H
Confidence 976643221 223455555554332211 11 11223566999999998876554 4
Q ss_pred CCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC-----CCCcEEEEEeeCC---HHHHHHHHh-----------cCCC
Q 009477 163 DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLP---SALAEFAKA-----------GLRD 223 (534)
Q Consensus 163 ~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~-----~~~q~ll~SAT~~---~~~~~~~~~-----------~l~~ 223 (534)
...+..+++||+|||||.....+...-..-+.... ...+.+.++|||. .+...-++. ....
T Consensus 299 e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 57789999999999999764322211111111111 1234588899962 111111110 0011
Q ss_pred CeEEEeccccc----cCCCceEEEEEechhhHHHHHH-----------------------HHHHHhc------------C
Q 009477 224 PHLVRLDVDTK----ISPDLKLAFFTLRQEEKHAALL-----------------------YMIREHI------------S 264 (534)
Q Consensus 224 ~~~i~~~~~~~----~~~~~~~~~~~~~~~~k~~~L~-----------------------~~l~~~~------------~ 264 (534)
|.++++..... ...+....+..+....-...+. .+.++.. .
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 22222221111 1222333333333322111111 1111110 0
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHH-------------cCC--CceeecCCCCHHHHHHHHH---HHhcCCcEEEEEeCcc
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFRE-------------EGL--EPSVCYGDMDQDARKIHVS---RFRARKTMFLIVTDVA 326 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~-------------~~~--~~~~l~g~~~~~~r~~~~~---~F~~g~~~iLI~Tdv~ 326 (534)
+-++.|-||.+.+....+++.|.. .++ .+..+.|.|...+|...+. .|...+++||---..+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcL 538 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCL 538 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhh
Confidence 123467788776666555554432 133 3455668899888854433 4566789999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhhhHHhhccCCCC--CC-cceEEEEe
Q 009477 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--GR-TGTAFSFV 370 (534)
Q Consensus 327 a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~--g~-~G~~i~~~ 370 (534)
++|+|+|.++.||++++..+.-+.+|.+||+.|- |+ -|..|.=+
T Consensus 539 SEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 539 SEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred hcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 9999999999999999999999999999999995 22 25554433
No 131
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=5.3e-16 Score=167.65 Aligned_cols=279 Identities=18% Similarity=0.209 Sum_probs=188.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |++.|--.-=.+ .+.-|+...||-|||+++.+|++-... .|+.|-|++++..||..=++++..+-++.
T Consensus 82 lG~r-~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL-----~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNAL-----TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCCC-cchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhh-----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 3555 778887655444 445899999999999999999886544 36679999999999999999999998899
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-----HHHHHh-cCCCCCCCeeEEEEcCCCccc-c----------C
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-----MHHLSE-VEDMSLKSVEYVVFDEADCLF-G----------M 183 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-----~~~l~~-~~~~~l~~~~~iViDEah~l~-~----------~ 183 (534)
|+.++++.++....+ +...-.+||+++|++.| .+.+.. ........+.+.|+||+|.++ + .
T Consensus 154 GLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 999999987665443 33456899999999887 444332 112335678899999999765 0 0
Q ss_pred -----ChHHHHHHHHHhcCC--------------C---------------------------------------------
Q 009477 184 -----GFAEQLHKILGQLSE--------------N--------------------------------------------- 199 (534)
Q Consensus 184 -----~~~~~~~~i~~~~~~--------------~--------------------------------------------- 199 (534)
........+...+.+ .
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 011111111111100 0
Q ss_pred ---------------------------------------------------------------CcEEEEEeeCCHHHHHH
Q 009477 200 ---------------------------------------------------------------RQTLLFSATLPSALAEF 216 (534)
Q Consensus 200 ---------------------------------------------------------------~q~ll~SAT~~~~~~~~ 216 (534)
.++.+||+|...+-.+|
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 13456666665555555
Q ss_pred HHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceee
Q 009477 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (534)
Q Consensus 217 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l 296 (534)
...|-- ..+.++...+....-....+......|..+++..+.+....+.++||-+.|....|.++..|...|+++.++
T Consensus 392 ~~iY~l--~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 392 EKTYKL--EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHhCC--cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 555432 223333222111111111233445678899998888888899999999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHhcCC-cEEEEEeCcccccCCCC
Q 009477 297 YGDMDQDARK-IHVSRFRARK-TMFLIVTDVAARGIDIP 333 (534)
Q Consensus 297 ~g~~~~~~r~-~~~~~F~~g~-~~iLI~Tdv~a~GlDip 333 (534)
+..-.+.+++ .++.. .|+ -.|-|||.||+||-||.
T Consensus 470 NAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9863332332 23322 444 46999999999999986
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=2.3e-16 Score=179.35 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=87.2
Q ss_pred HHHHHHHHHhc-CCCCeEEEEEcChhhHHHHHHHHHHcCCC--ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccccc
Q 009477 253 AALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE--PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (534)
Q Consensus 253 ~~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~~--~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~G 329 (534)
..+...+.+.. ..++++|||++|....+.+++.|...... ...+.-+++...|..+++.|++++-.||++|....+|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 45555555443 35689999999999999999999764321 1222223334567889999999989999999999999
Q ss_pred CCCCC--CCEEEEcCCCCC-hhh-----------------------------hHHhhccCCCCCCcceEEEEeccc
Q 009477 330 IDIPL--LDNVINWDFPPK-PKI-----------------------------FVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 330 lDip~--v~~VI~~~~p~s-~~~-----------------------------~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
+|+|+ +++||...+|.. +.+ +.|.+||.-|...+--++.++++.
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 99997 477888887752 221 389999999987653345555554
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.77 E-value=2.2e-16 Score=169.53 Aligned_cols=321 Identities=16% Similarity=0.179 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHhc---CC-------cEEEEcCCCChHHHHHHHHHHHHhhhcCC--CCCeEEEEEcCcHHHHHHHHHH
Q 009477 45 VPTPIQRKTMPLILS---GA-------DVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKF 112 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~---~~-------d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--~~g~~~Lil~PtreLa~Q~~~~ 112 (534)
.++|+|++.+..+.. |. .+|+.-..|+|||+-.+..++..+..... ..-.+.||++|. .|+..|.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999987643 22 38888899999999877666666665521 011679999997 788888887
Q ss_pred HHHhhccCCCeEEEEEcCCCHHHHH-----HHH---hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC
Q 009477 113 TKELGRYTDLRISLLVGGDSMESQF-----EEL---AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (534)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~~~~-----~~~---~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~ 184 (534)
+.++.....+..-.++|+.+. .|. ..+ .-..-|++-+++.+.+.... +....++++|+||.|++-+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh
Confidence 777654446667777776653 111 111 11345888888988877664 667889999999999988753
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEeeC-CHHHHHHHHh-cCCCCeE------------------------------------
Q 009477 185 FAEQLHKILGQLSENRQTLLFSATL-PSALAEFAKA-GLRDPHL------------------------------------ 226 (534)
Q Consensus 185 ~~~~~~~i~~~~~~~~q~ll~SAT~-~~~~~~~~~~-~l~~~~~------------------------------------ 226 (534)
..+...+..+. .++.|++|+|| -+++.++... .+.+|.+
T Consensus 393 --s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 --SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 34444555554 45568899997 1111111110 0000000
Q ss_pred ---------EE-ec-cccccCCCceEEEEEechhh---------------------------------------------
Q 009477 227 ---------VR-LD-VDTKISPDLKLAFFTLRQEE--------------------------------------------- 250 (534)
Q Consensus 227 ---------i~-~~-~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 250 (534)
++ .. .-....|......+.+++..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 00 00 00011122222233333222
Q ss_pred -----------------------------HHHHHHHHHHHhcC-CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 251 -----------------------------KHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 251 -----------------------------k~~~L~~~l~~~~~-~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
+...|..++..... ....+.+..|-+...+.+...++-.|+.+..+||++
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 11122222211100 011233333445555566666666799999999999
Q ss_pred CHHHHHHHHHHHhcCCc--EE-EEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceE--EEEeccc
Q 009477 301 DQDARKIHVSRFRARKT--MF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSE 373 (534)
Q Consensus 301 ~~~~r~~~~~~F~~g~~--~i-LI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~--i~~~~~~ 373 (534)
+..+|..+++.|.+... .| |.+|-+.+.||++-+.+.||.+|+.|+|..=.|.++|+-|.|++-.| |-|++..
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 99999999999997543 44 56778889999999999999999999999999999999999997555 5566554
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.77 E-value=5.8e-16 Score=166.01 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=78.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC----CcEEEEEeCcccccCCC--------
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR----KTMFLIVTDVAARGIDI-------- 332 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g----~~~iLI~Tdv~a~GlDi-------- 332 (534)
.++.++|.+.+....+.+++.|...---...+.|+.+ .+...+++|++. ...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5789999999999999999999764323345556432 345678888874 78999999999999999
Q ss_pred C--CCCEEEEcCCCCChhh-------------------------hHHhhccCCCCCCc--ceEEEEeccc
Q 009477 333 P--LLDNVINWDFPPKPKI-------------------------FVHRVGRAARAGRT--GTAFSFVTSE 373 (534)
Q Consensus 333 p--~v~~VI~~~~p~s~~~-------------------------~~qr~GR~gR~g~~--G~~i~~~~~~ 373 (534)
| .+++||...+|+.+.+ +.|-+||.-|...+ --++.++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 4888998888854322 47888888887654 3345555544
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=9.1e-18 Score=146.51 Aligned_cols=121 Identities=39% Similarity=0.664 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccc
Q 009477 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (534)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~ 328 (534)
..|...+...+.+....++++||||++..+++.+++.|...+..+..+||+++...|..+++.|.++...||++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36888888888887667889999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEE
Q 009477 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (534)
Q Consensus 329 GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~ 369 (534)
|+|+|.+++||.++.|++...|.|++||++|.|+.|.++.+
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998887653
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.76 E-value=6.5e-17 Score=172.16 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=110.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCCeE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRI 124 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~~~~~~~l~~ 124 (534)
|..+|++.+..+-.+..+++.|||.+|||++-...+ ++..+.. ...-++++.||.+|+.|+...+. +|-..+-.+.
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 889999999999999999999999999998755443 3333332 23459999999999999986443 4422222333
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc--CCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV--EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~--~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 202 (534)
..+.|.-. +.++.-.-+|+|+|+-|+.+-..+... ..-..+.+.+||+||+|.+.+..-.--+.+++... .+.+
T Consensus 589 ~sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~ 664 (1330)
T KOG0949|consen 589 VSLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPF 664 (1330)
T ss_pred hhhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCe
Confidence 33334222 222222337999999999888777642 12347889999999999988654344444454444 4889
Q ss_pred EEEEeeCCH
Q 009477 203 LLFSATLPS 211 (534)
Q Consensus 203 ll~SAT~~~ 211 (534)
+.+|||+.+
T Consensus 665 L~LSATigN 673 (1330)
T KOG0949|consen 665 LVLSATIGN 673 (1330)
T ss_pred eEEecccCC
Confidence 999999854
No 137
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.72 E-value=1.8e-16 Score=139.31 Aligned_cols=144 Identities=42% Similarity=0.605 Sum_probs=115.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+++++.++||+|||.+++.++.+....+ ...+++|++|++.++.|+.+.+...... ++.+..+.++.....+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 4689999999999999998888776652 3567999999999999999988887655 68888888887777766666
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
..+.+|+++|++.+...+... ......++++|+||+|.+....+...............+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 788999999999998877652 23466789999999999887655444333445556788999999996
No 138
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.72 E-value=1.1e-16 Score=174.33 Aligned_cols=317 Identities=22% Similarity=0.301 Sum_probs=216.9
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEcCCCChHHH---HHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 44 KVPTPIQRKTMPLIL----SGADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~---~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.+++.+|.+.+..++ .+.++|+....|-|||. +|+-.++.... ..|+ .||++|..-++.. -++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~----~~gp-flvvvplst~~~W----~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ----IHGP-FLVVVPLSTITAW----EREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh----ccCC-eEEEeehhhhHHH----HHHH
Confidence 579999999997665 47899999999999996 44433333322 2355 8999997665443 3344
Q ss_pred hccCCCeEEEEEcCCCHHHHHHHH---hC------CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHH
Q 009477 117 GRYTDLRISLLVGGDSMESQFEEL---AQ------NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (534)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~~~---~~------~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~ 187 (534)
...+++++.+++|.....+..+.. .. ..+++++|++.++.--.. +.--.+.++++||||++-+.. .
T Consensus 440 ~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~--~ 514 (1373)
T KOG0384|consen 440 ETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE--S 514 (1373)
T ss_pred HHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH--H
Confidence 444478999999876555433322 12 478999999998755433 333467899999999998643 4
Q ss_pred HHHHHHHhcCCCCcEEEEEeeCC-HHHHHHHHhc-CCCCeEEEe---------------------------------ccc
Q 009477 188 QLHKILGQLSENRQTLLFSATLP-SALAEFAKAG-LRDPHLVRL---------------------------------DVD 232 (534)
Q Consensus 188 ~~~~i~~~~~~~~q~ll~SAT~~-~~~~~~~~~~-l~~~~~i~~---------------------------------~~~ 232 (534)
.+...+..+.-+. .|+.|+||- +++.++.... +..|..... +.+
T Consensus 515 ~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 515 KLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 4445566665444 477888873 3344433211 111111110 112
Q ss_pred cccCCCceEEEE-Eech------------------------------------------------hhH----H------H
Q 009477 233 TKISPDLKLAFF-TLRQ------------------------------------------------EEK----H------A 253 (534)
Q Consensus 233 ~~~~~~~~~~~~-~~~~------------------------------------------------~~k----~------~ 253 (534)
...++..+.... .+.. +++ . .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 222222222211 1110 000 0 1
Q ss_pred HHHHHHHH-------------hcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC---c
Q 009477 254 ALLYMIRE-------------HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---T 317 (534)
Q Consensus 254 ~L~~~l~~-------------~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~---~ 317 (534)
.|..+|+. ....+.+||||..-....+-|+++|...+++.-.|.|+...+.|+..++.|.... .
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 22222221 2245789999999999999999999999999999999999999999999998644 4
Q ss_pred EEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcc--eEEEEeccccH
Q 009477 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (534)
Q Consensus 318 ~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G--~~i~~~~~~e~ 375 (534)
-.|++|.+.+-|||+...+.||.||.-|+|..=+|...||+|.|++. .+|-||+.+-+
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 57999999999999999999999999999999999999999999874 56889987643
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=2.6e-16 Score=159.22 Aligned_cols=278 Identities=19% Similarity=0.228 Sum_probs=182.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
-++-+|||.||||.-++ +++.+ .++.++--|-|-||..+++.++..+ +.+..++|.+......+ .
T Consensus 193 Ii~H~GPTNSGKTy~AL----qrl~~-----aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL----QRLKS-----AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred EEEEeCCCCCchhHHHH----HHHhh-----hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--C
Confidence 36678999999998655 55543 3457999999999999999888875 88888888554332211 2
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCC-CCcEEEEEeeCCHHHHHHHHhc
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAG 220 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~-~~q~ll~SAT~~~~~~~~~~~~ 220 (534)
..+..+-||-+++- . -..+++.|+||.+.|.+...+..+.+.+-.+.. ...+ .+- +++..+.+..
T Consensus 258 ~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL---CGe--psvldlV~~i 323 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL---CGE--PSVLDLVRKI 323 (700)
T ss_pred CcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc---cCC--chHHHHHHHH
Confidence 34667778866442 1 235789999999999987655555554433221 1111 111 2223333322
Q ss_pred C---CCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCC-ceee
Q 009477 221 L---RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVC 296 (534)
Q Consensus 221 l---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~-~~~l 296 (534)
+ ++...++.- + ...+-.-.+.++.-+.+. +.+.+|| |-+++.+-.+...+.+.|.. ++++
T Consensus 324 ~k~TGd~vev~~Y--e-----------Rl~pL~v~~~~~~sl~nl--k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 324 LKMTGDDVEVREY--E-----------RLSPLVVEETALGSLSNL--KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HhhcCCeeEEEee--c-----------ccCcceehhhhhhhhccC--CCCCeEE-EeehhhHHHHHHHHHHhcCcceEEE
Confidence 2 222222111 1 111111112334444433 3455544 44778899999999988766 9999
Q ss_pred cCCCCHHHHHHHHHHHhc--CCcEEEEEeCcccccCCCCCCCEEEEcCCC---------CChhhhHHhhccCCCCCC---
Q 009477 297 YGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDFP---------PKPKIFVHRVGRAARAGR--- 362 (534)
Q Consensus 297 ~g~~~~~~r~~~~~~F~~--g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p---------~s~~~~~qr~GR~gR~g~--- 362 (534)
||+++++.|...-..|.+ ++++||||||.++.|+|+ +++.||+|++- .+.....|..|||||.|.
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999987 899999999999999999 68899988863 456678999999999865
Q ss_pred cceEEEEeccccHHHHHHHHHHhCCCc
Q 009477 363 TGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (534)
Q Consensus 363 ~G~~i~~~~~~e~~~~~~l~~~~~~~~ 389 (534)
.|.+.++... |...+ ...+..+.
T Consensus 467 ~G~vTtl~~e-DL~~L---~~~l~~p~ 489 (700)
T KOG0953|consen 467 QGEVTTLHSE-DLKLL---KRILKRPV 489 (700)
T ss_pred CceEEEeeHh-hHHHH---HHHHhCCc
Confidence 3666665443 34443 44444443
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.71 E-value=3.1e-17 Score=129.83 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=75.5
Q ss_pred HHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCC
Q 009477 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (534)
Q Consensus 284 ~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g 361 (534)
+.|+..++.+..+||++++.+|..+++.|++++..|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 141
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.70 E-value=1.3e-15 Score=159.76 Aligned_cols=321 Identities=19% Similarity=0.254 Sum_probs=216.8
Q ss_pred CcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 46 PTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 46 ~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
+-++|.-.+..+. .+-+.|+....|-|||.- .+..+..|.+... +|+ .||+||+..|-. |...+.+|| ..
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-~gp-HLVVvPsSTleN-WlrEf~kwC--Ps 473 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-PGP-HLVVVPSSTLEN-WLREFAKWC--PS 473 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-CCC-cEEEecchhHHH-HHHHHHHhC--Cc
Confidence 8899998887653 345689999999999964 2333344443322 455 799999977654 344455665 46
Q ss_pred CeEEEEEcCCCHHHHHHHHh----CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 122 LRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~----~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
+++-.++|......+.+..- ...+|+++|+.-...--...+.+.-.++.++|+||+|.+-++. .+++..++.- +
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I-~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI-N 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc-c
Confidence 89999999876555544332 2689999999755322221122334578999999999988765 4445444433 2
Q ss_pred CCCcEEEEEeeCCH-HHH---------------------------------------------HHHHhcCCC--------
Q 009477 198 ENRQTLLFSATLPS-ALA---------------------------------------------EFAKAGLRD-------- 223 (534)
Q Consensus 198 ~~~q~ll~SAT~~~-~~~---------------------------------------------~~~~~~l~~-------- 223 (534)
....+|+|+||-. ++. .-++..+..
T Consensus 552 -An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~ 630 (941)
T KOG0389|consen 552 -ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKS 630 (941)
T ss_pred -ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4556888888610 000 000000000
Q ss_pred -------Ce--E---EEec-------------------ccccc--CCC---------------ceEEEEE----------
Q 009477 224 -------PH--L---VRLD-------------------VDTKI--SPD---------------LKLAFFT---------- 245 (534)
Q Consensus 224 -------~~--~---i~~~-------------------~~~~~--~~~---------------~~~~~~~---------- 245 (534)
|. . +.+. ..... ... +...++.
T Consensus 631 qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~ 710 (941)
T KOG0389|consen 631 QVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKR 710 (941)
T ss_pred HHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHH
Confidence 00 0 0000 00000 000 0000000
Q ss_pred ----------------------------------------------echhhHHHHHHHHHHHhcCCCCeEEEEEcChhhH
Q 009477 246 ----------------------------------------------LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV 279 (534)
Q Consensus 246 ----------------------------------------------~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~ 279 (534)
.....|...|..+|.+....+.++|||..-....
T Consensus 711 il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 711 ILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQML 790 (941)
T ss_pred HhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHH
Confidence 0001266777778877777889999999998889
Q ss_pred HHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-c-EEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccC
Q 009477 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-T-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357 (534)
Q Consensus 280 e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~-~-~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~ 357 (534)
+-+...|...++....+.|...-..|..+++.|...+ + -.|++|...+-|||+...++||.+|.-.+|-+=.|.-.|+
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHH
Confidence 9999999999999999999999999999999998876 3 3578999999999999999999999999999999999999
Q ss_pred CCCCCc--ceEEEEeccccH
Q 009477 358 ARAGRT--GTAFSFVTSEDM 375 (534)
Q Consensus 358 gR~g~~--G~~i~~~~~~e~ 375 (534)
+|.|+. -.++.+++.+-+
T Consensus 871 HRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HhhCCcceeEEEEEEecCcH
Confidence 999975 567888887754
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.69 E-value=1.3e-15 Score=165.70 Aligned_cols=340 Identities=18% Similarity=0.237 Sum_probs=227.1
Q ss_pred CcCCCCCCHHHHHHHH-HCCC-------------C-------CCcHHHHHHHHHHh--c--CCcEEEEcCCCChHHHHHH
Q 009477 24 GFESLNLSPNVFRAIK-RKGY-------------K-------VPTPIQRKTMPLIL--S--GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~-~~g~-------------~-------~~~~~Q~~ai~~il--~--~~d~i~~a~TGsGKT~~~l 78 (534)
.+.--|+|++++.... ++.| . .++.+|++.+..+. . +-+.|++...|-|||+-.+
T Consensus 933 ~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQti 1012 (1549)
T KOG0392|consen 933 IPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTI 1012 (1549)
T ss_pred CCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHH
Confidence 3444588888877632 2222 1 46889999998653 2 3579999999999998554
Q ss_pred HHHHHHhhhc---C-CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH
Q 009477 79 VPMLQRLNQH---V-PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL 154 (534)
Q Consensus 79 ~p~l~~l~~~---~-~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l 154 (534)
.-+..-.... . .-.....||+||+ .|+--|..++++|..+ +++...+|+.......+.-.++.+|+|++++.+
T Consensus 1013 cilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~ 1089 (1549)
T KOG0392|consen 1013 CILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVV 1089 (1549)
T ss_pred HHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHH
Confidence 3332222221 1 1123348999997 8899999999998876 788888888776666666567889999999988
Q ss_pred HHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCC-HHHH-------------------
Q 009477 155 MHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP-SALA------------------- 214 (534)
Q Consensus 155 ~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~-~~~~------------------- 214 (534)
.+-+.. +.-.++.|+|+||-|-+-+. ...+.+.++.+..+.+ +.+|+||- +++.
T Consensus 1090 RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKq 1163 (1549)
T KOG0392|consen 1090 RNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQ 1163 (1549)
T ss_pred HHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHH
Confidence 754433 22346789999999988764 4556666666655544 66788861 0000
Q ss_pred -------------------------------------------------------------------------HHHHhcC
Q 009477 215 -------------------------------------------------------------------------EFAKAGL 221 (534)
Q Consensus 215 -------------------------------------------------------------------------~~~~~~l 221 (534)
+|.+. .
T Consensus 1164 Fqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~-~ 1242 (1549)
T KOG0392|consen 1164 FQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK-A 1242 (1549)
T ss_pred HHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH-h
Confidence 00000 0
Q ss_pred CCCeEEEeccccccCCCce----------------EE-EEE-----------------------echhhHHHHHHHHHHH
Q 009477 222 RDPHLVRLDVDTKISPDLK----------------LA-FFT-----------------------LRQEEKHAALLYMIRE 261 (534)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~----------------~~-~~~-----------------------~~~~~k~~~L~~~l~~ 261 (534)
+....-..+. ...+.... +. ++. +....|..+|.+++.+
T Consensus 1243 k~~~~~~~d~-~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~e 1321 (1549)
T KOG0392|consen 1243 KQCVSSQIDG-GEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSE 1321 (1549)
T ss_pred cccccccccc-chhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHH
Confidence 0000000000 00000000 00 000 0111256667676665
Q ss_pred h-cC-------------CCCeEEEEEcChhhHHHHHHHHHHc-C--CCceeecCCCCHHHHHHHHHHHhcC-CcEEE-EE
Q 009477 262 H-IS-------------SDQQTLIFVSTKHHVEFLNVLFREE-G--LEPSVCYGDMDQDARKIHVSRFRAR-KTMFL-IV 322 (534)
Q Consensus 262 ~-~~-------------~~~~~IVF~~t~~~~e~l~~~L~~~-~--~~~~~l~g~~~~~~r~~~~~~F~~g-~~~iL-I~ 322 (534)
. +. .+.++||||.-+...+.+..-|-+. - +....++|+.++.+|.++.++|.++ .++|| ++
T Consensus 1322 CGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1322 CGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred hCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 3 11 3568999999999999988766543 2 3344899999999999999999998 67876 58
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcc--eEEEEecccc
Q 009477 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (534)
Q Consensus 323 Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G--~~i~~~~~~e 374 (534)
|.|.+-|+|+.+.|.||+++--|+|..-.|.+.||+|.|++- .+|-+++..-
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 899999999999999999999999999999999999999975 4577777664
No 143
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.69 E-value=3.1e-15 Score=149.36 Aligned_cols=307 Identities=17% Similarity=0.210 Sum_probs=207.3
Q ss_pred CCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 44 KVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
..+-|+|++.+...+. |-.+++....|-|||.-++.-+.....+ ...||+||. .|-..|.+.+.+|......
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE------wplliVcPA-svrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE------WPLLIVCPA-SVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc------CcEEEEecH-HHhHHHHHHHHHhcccccc
Confidence 3578999999986654 6779999999999998766333222222 248999997 5667778888887644322
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcE
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 202 (534)
+.++.++.+.- -.+..-..|.|.+++.+..+-. .+.-..+.+||+||+|.+-+.. ..+...++..+.....+
T Consensus 270 -i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 270 -IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHV 341 (689)
T ss_pred -eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhhe
Confidence 44455544321 1123346799999987765543 2445568999999999877643 44566666666666789
Q ss_pred EEEEeeCC----HH---------------HHHHHHhcCCCCeEEEe--ccc--------------------------ccc
Q 009477 203 LLFSATLP----SA---------------LAEFAKAGLRDPHLVRL--DVD--------------------------TKI 235 (534)
Q Consensus 203 ll~SAT~~----~~---------------~~~~~~~~l~~~~~i~~--~~~--------------------------~~~ 235 (534)
+|+|+|+. .+ ..+|+..|... ..++. +.. ...
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~-k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDG-KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCc-cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999972 21 22333333211 11111 000 011
Q ss_pred CCCceEEEEEechh-------------------------------------hHHHHHHHHHHH----hcCCCCeEEEEEc
Q 009477 236 SPDLKLAFFTLRQE-------------------------------------EKHAALLYMIRE----HISSDQQTLIFVS 274 (534)
Q Consensus 236 ~~~~~~~~~~~~~~-------------------------------------~k~~~L~~~l~~----~~~~~~~~IVF~~ 274 (534)
++..+...+.+... .|.++.++.+.. .-.++.+.+||+.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 12212222222110 022333333333 1235779999999
Q ss_pred ChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-cEE-EEEeCcccccCCCCCCCEEEEcCCCCChhhhHH
Q 009477 275 TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352 (534)
Q Consensus 275 t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~-~~i-LI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~q 352 (534)
.....+.+...+.+.++....|+|..+...|....+.|+..+ +.| +++-..+..|+++...++|++..++++|...+|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 999999999999999999999999999999999999999764 444 445567889999999999999999999999999
Q ss_pred hhccCCCCCCcceE
Q 009477 353 RVGRAARAGRTGTA 366 (534)
Q Consensus 353 r~GR~gR~g~~G~~ 366 (534)
.-.|++|.|++.-+
T Consensus 581 AEDRaHRiGQkssV 594 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSV 594 (689)
T ss_pred chhhhhhcccccee
Confidence 99999999987544
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.68 E-value=7.2e-14 Score=154.40 Aligned_cols=120 Identities=18% Similarity=0.295 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHh----cCCcEEEEEeCcc
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR----ARKTMFLIVTDVA 326 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~----~g~~~iLI~Tdv~ 326 (534)
-...+.+.+.+.+..++.++||++|....+.++..|....-......|. ..+..+++.|+ .++..||++|...
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 3455666665555566679999999999999999987532223444554 24667777776 4678899999999
Q ss_pred cccCCCCC--CCEEEEcCCCCC-hh-----------------------------hhHHhhccCCCCCCcceEEEEeccc
Q 009477 327 ARGIDIPL--LDNVINWDFPPK-PK-----------------------------IFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 327 a~GlDip~--v~~VI~~~~p~s-~~-----------------------------~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
++|||+|+ +++||...+|.. +. .+.|.+||.-|...+--++.++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99999997 778998887742 21 1388999999986553345555554
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=5.9e-16 Score=143.31 Aligned_cols=153 Identities=23% Similarity=0.239 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 45 VPTPIQRKTMPLILS-------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~-------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
+|+++|.+++..+.. .+.+++.++||||||.+++..+.+... ++++++|+..|+.|+.+.+..+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhh
Confidence 489999999998874 578999999999999998865554432 69999999999999999887765
Q ss_pred ccCCCeEE-----------EEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC----------CCCCCeeEEEEcC
Q 009477 118 RYTDLRIS-----------LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED----------MSLKSVEYVVFDE 176 (534)
Q Consensus 118 ~~~~l~~~-----------~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~----------~~l~~~~~iViDE 176 (534)
........ ...................++++.|...+......... ......++||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 75 SEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 43211100 01111111222333345788999999999877653111 2345678999999
Q ss_pred CCccccCChHHHHHHHHHhcCCCCcEEEEEeeCC
Q 009477 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~ 210 (534)
||+..... .+..++. .....+|+|||||+
T Consensus 155 aH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99966432 1445545 45778999999986
No 146
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=6.9e-15 Score=148.80 Aligned_cols=343 Identities=14% Similarity=0.059 Sum_probs=228.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
..+.-+....+|.+++..+.+|+++++.-.|.+||.++|.......+... .....+++.|+.++++...+.+.-...
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEEEEE
Confidence 33455667889999999999999999999999999999987776654432 234589999999998764432111100
Q ss_pred -cCCC--eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcC---CCCCCCeeEEEEcCCCccccC-C--hHHHH
Q 009477 119 -YTDL--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGM-G--FAEQL 189 (534)
Q Consensus 119 -~~~l--~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~---~~~l~~~~~iViDEah~l~~~-~--~~~~~ 189 (534)
.... .++-.+.|.+..........+.+++++.|........-.. ..++-...+++.||+|-.... + ...++
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 0111 2333345555555555566789999999987654433211 123445578999999976533 1 12222
Q ss_pred HHHH---Hhc--CCCCcEEEEEeeCCHHHHHHHHh-cCCCCeEEEeccccccCCCceEEEEEec---------hhhHHHH
Q 009477 190 HKIL---GQL--SENRQTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFTLR---------QEEKHAA 254 (534)
Q Consensus 190 ~~i~---~~~--~~~~q~ll~SAT~~~~~~~~~~~-~l~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~k~~~ 254 (534)
.++. ..+ ..+.|++-.|||+.......... ++.+..++..+... ..-.+.++--+ .+.+...
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP---s~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP---SSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC---CccceEEEeCCCCCCcchhhhhhHHHH
Confidence 2222 222 34678999999986665433332 23344444443221 12222222111 1234444
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc----CC----CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~----~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~ 326 (534)
...++.+.+..+-++|-||++++.||.+....+.. +. .+....|+-..++|+++..+.-.|+..-+|+|..+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 45555555667889999999999999876554432 21 23455678888999999999989999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEec--cccHHHHHHHHHHhCC
Q 009477 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT--SEDMAYLLDLHLFLSK 387 (534)
Q Consensus 327 a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~--~~e~~~~~~l~~~~~~ 387 (534)
+-|+||..++.|+..++|.|...+.|..||+||.+++..++.++. |-|..|+..-+..++.
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGS 656 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCC
Confidence 999999999999999999999999999999999998877755554 4555566555555544
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.3e-13 Score=150.86 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=107.1
Q ss_pred EechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC
Q 009477 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (534)
Q Consensus 245 ~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td 324 (534)
.....+|..+++..+.+....+.++||-+.|....|.++..|...|++..+++......+-+.+-+.=+. -.|-|||.
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEecc
Confidence 3445678999999999888899999999999999999999999999999888877554444444333223 35999999
Q ss_pred cccccCCCC--------CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 325 VAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 325 v~a~GlDip--------~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
||+||-||. +=-+||.-..+.|...--|..||+||.|.+|.+-.|++-+|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 999999998 33579999999999999999999999999999998888654
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=2.6e-13 Score=148.28 Aligned_cols=318 Identities=21% Similarity=0.332 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhhccCCC
Q 009477 45 VPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDL 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l 122 (534)
..+|+|.++++.+.+ ++++++.+|+|||||+++-+.++. ...-.+++++.|.-+.+.-.+. +-++|+...|+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 348999999998766 466999999999999998766554 2244579999999999886664 77889988999
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC---h--HHHHHHHHHhcC
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---F--AEQLHKILGQLS 197 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~---~--~~~~~~i~~~~~ 197 (534)
.+..+.|..+.+-.. ....+|+|+||++.-.+ . ..+.+++.|.||.|.+.+.. + .-.+..|..++.
T Consensus 1217 ~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~ 1287 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLE 1287 (1674)
T ss_pred eEEecCCccccchHH---hhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHH
Confidence 999999987766543 34578999999987543 2 46789999999999887421 0 011555666667
Q ss_pred CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech---hhHH----HHHHHHHHHhcCCCCeEE
Q 009477 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKH----AALLYMIREHISSDQQTL 270 (534)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~k~----~~L~~~l~~~~~~~~~~I 270 (534)
++.+++.+|..+.+. .++ .+......+.+.....+.|.. .....+.. .... ......+..+...+.+++
T Consensus 1288 k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~-i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1288 KKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLE-IHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred hheeEEEeehhhccc-hhh--ccccccceeecCcccCCCcee-EEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 788899999887654 233 455555566666655555422 22222221 1221 223344555556789999
Q ss_pred EEEcChhhHHHHHHHHHH----------------------cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccc
Q 009477 271 IFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (534)
Q Consensus 271 VF~~t~~~~e~l~~~L~~----------------------~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~ 328 (534)
||+++++++..++.-|-. ..+++.+-|-+++......+-.-|..|.+.|+|...- ..
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 999999999877654322 1223334477888888888899999999999998766 77
Q ss_pred cCCCCCCCEEE-----EcC------CCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCc
Q 009477 329 GIDIPLLDNVI-----NWD------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (534)
Q Consensus 329 GlDip~v~~VI-----~~~------~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~ 389 (534)
|+-... +.|| .|| .+.+.....|++|+|.|+ |.|+.+.......|+.. |+..++
T Consensus 1443 ~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk---fl~e~l 1507 (1674)
T KOG0951|consen 1443 GTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK---FLYEPL 1507 (1674)
T ss_pred cccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH---hccCcC
Confidence 776543 3344 233 234567789999999995 78888888777666543 555444
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=3.3e-13 Score=149.88 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhc-CCCCeEEEEEcChhhHHHHHHHHHHcCCC-ceeecCCCCHHHHHHHHHHHhcCCc-EEEEEeCcccc
Q 009477 252 HAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAAR 328 (534)
Q Consensus 252 ~~~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~~-~~~l~g~~~~~~r~~~~~~F~~g~~-~iLI~Tdv~a~ 328 (534)
...+...+...+ ..+++++||++|....+.+.+.+...... ....+| ...+...++.|+.+.- .++|+|..+++
T Consensus 464 ~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf~E 540 (654)
T COG1199 464 LAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecC---CCcHHHHHHHHHHhcCCeEEEeeccccC
Confidence 334444443322 23558999999999999999999876553 223333 3445578888987665 89999999999
Q ss_pred cCCCCC--CCEEEEcCCCCC------------------------------hhhhHHhhccCCCCCCcceEEEEecc
Q 009477 329 GIDIPL--LDNVINWDFPPK------------------------------PKIFVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 329 GlDip~--v~~VI~~~~p~s------------------------------~~~~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
|+|+|+ +..||...+|.- ...+.|.+||+-|.-.+.-++.+++.
T Consensus 541 GVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred cccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 999996 467888887742 12249999999997554444445544
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.3e-12 Score=145.39 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=61.1
Q ss_pred CCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 41 KGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
..|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++.+..... ...++++.+.|..=..|..+.+++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhh
Confidence 367777999998886554 4788999999999999999999998766432 2367999999999999999888874
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.56 E-value=1.4e-14 Score=115.18 Aligned_cols=81 Identities=38% Similarity=0.647 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCC
Q 009477 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (534)
Q Consensus 281 ~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~ 360 (534)
.+++.|...++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 009477 361 G 361 (534)
Q Consensus 361 g 361 (534)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.52 E-value=5.5e-13 Score=146.67 Aligned_cols=336 Identities=22% Similarity=0.207 Sum_probs=188.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc----C----CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 35 FRAIKRKGYKVPTPIQRKTMPLILS----G----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 35 ~~~l~~~g~~~~~~~Q~~ai~~il~----~----~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
.+.+...--..-..+|.+|+..+.. . --+|-+|.||+|||++=.--|. .|.. ...|.|..|-.--|.|+
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd--~~~g~RfsiALGLRTLT 474 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD--DKQGARFAIALGLRSLT 474 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC--CCCCceEEEEcccccee
Confidence 3444333333457799999987754 1 1277799999999997552222 2222 23678999999999999
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH-------------------------------------------HHhC-
Q 009477 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFE-------------------------------------------ELAQ- 142 (534)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~-------------------------------------------~~~~- 142 (534)
.|+-+.+++-....+-..++++||....+.++ .+..
T Consensus 475 LQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~ 554 (1110)
T TIGR02562 475 LQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLD 554 (1110)
T ss_pred ccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccC
Confidence 99999888755555556677777643332221 0000
Q ss_pred -------CCCEEEECchHHHHHHHhcC--CCCCC----CeeEEEEcCCCccccCC--hHHHHHHHHHhcCCCCcEEEEEe
Q 009477 143 -------NPDIIIATPGRLMHHLSEVE--DMSLK----SVEYVVFDEADCLFGMG--FAEQLHKILGQLSENRQTLLFSA 207 (534)
Q Consensus 143 -------~~~IiV~Tp~~l~~~l~~~~--~~~l~----~~~~iViDEah~l~~~~--~~~~~~~i~~~~~~~~q~ll~SA 207 (534)
...|+|||++.++....... ...+. .-+.|||||+|...... +...+.+.+.. -+..++++||
T Consensus 555 ~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~--lG~~VlLmSA 632 (1110)
T TIGR02562 555 DKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGL--LGSRVLLSSA 632 (1110)
T ss_pred hhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHH--cCCCEEEEeC
Confidence 14699999998886653211 11111 12579999999854322 22233332223 3578999999
Q ss_pred eCCHHHHHHH-Hhc----------CCC---CeEEEec-ccc--c---------------------------cCCCce-EE
Q 009477 208 TLPSALAEFA-KAG----------LRD---PHLVRLD-VDT--K---------------------------ISPDLK-LA 242 (534)
Q Consensus 208 T~~~~~~~~~-~~~----------l~~---~~~i~~~-~~~--~---------------------------~~~~~~-~~ 242 (534)
|+|+.+..-. .+| .+. +..+... .++ . ..+..+ -.
T Consensus 633 TLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~ 712 (1110)
T TIGR02562 633 TLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAE 712 (1110)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEE
Confidence 9998765422 222 121 1111110 000 0 001111 11
Q ss_pred EEEechh-----hHHHHHHHHHHHhc-----------C-CCCe---EEEEEcChhhHHHHHHHHHHc----C--CCceee
Q 009477 243 FFTLRQE-----EKHAALLYMIREHI-----------S-SDQQ---TLIFVSTKHHVEFLNVLFREE----G--LEPSVC 296 (534)
Q Consensus 243 ~~~~~~~-----~k~~~L~~~l~~~~-----------~-~~~~---~IVF~~t~~~~e~l~~~L~~~----~--~~~~~l 296 (534)
...+... .....+...+.+.. + .+++ .+|=+++.+.+-.++..|-.. + +...++
T Consensus 713 i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~y 792 (1110)
T TIGR02562 713 LLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCY 792 (1110)
T ss_pred EeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEe
Confidence 1122211 11222222222110 1 1222 356666666666666555433 3 335677
Q ss_pred cCCCCHHHHHHHHHHH----------------------hc----CCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhh
Q 009477 297 YGDMDQDARKIHVSRF----------------------RA----RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIF 350 (534)
Q Consensus 297 ~g~~~~~~r~~~~~~F----------------------~~----g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~ 350 (534)
|+...-..|..+.+.. .+ +...|+|+|++++-|+|+. .+++|- -|.+....
T Consensus 793 HSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sl 869 (1110)
T TIGR02562 793 HAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSI 869 (1110)
T ss_pred cccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHH
Confidence 8887666555443321 11 3568999999999999994 455553 25668999
Q ss_pred HHhhccCCCCCCc--ceEEEEeccccHHHH
Q 009477 351 VHRVGRAARAGRT--GTAFSFVTSEDMAYL 378 (534)
Q Consensus 351 ~qr~GR~gR~g~~--G~~i~~~~~~e~~~~ 378 (534)
+||+||+.|.|.. +..-.++-..++.++
T Consensus 870 iQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 870 IQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred HHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 9999999998753 333344445566555
No 153
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.52 E-value=8.1e-12 Score=128.02 Aligned_cols=237 Identities=19% Similarity=0.214 Sum_probs=172.3
Q ss_pred CCCEEEECchHHHHHHHh-----cCCCCCCCeeEEEEcCCCccc--cCChHHHHHHHHHhcCC-----------------
Q 009477 143 NPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLF--GMGFAEQLHKILGQLSE----------------- 198 (534)
Q Consensus 143 ~~~IiV~Tp~~l~~~l~~-----~~~~~l~~~~~iViDEah~l~--~~~~~~~~~~i~~~~~~----------------- 198 (534)
..|||||+|=-|...+.. ...-.|++++++|+|.||-++ +|.+...+.+.+...|.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 479999999888877763 111238999999999999766 44444444444444443
Q ss_pred ----CCcEEEEEeeCCHHHHHHHHhcCCCCe-EEEecc--c-----cccCCCceEEEEEechhh-------HHHHHHHHH
Q 009477 199 ----NRQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV--D-----TKISPDLKLAFFTLRQEE-------KHAALLYMI 259 (534)
Q Consensus 199 ----~~q~ll~SAT~~~~~~~~~~~~l~~~~-~i~~~~--~-----~~~~~~~~~~~~~~~~~~-------k~~~L~~~l 259 (534)
-+|+|++|+...+++..+.+....|.. .+.+.. . ......+.+.|..++... +.......+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 269999999999999999988665532 222221 1 123456677777654322 222222211
Q ss_pred H-Hh--cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc--cccCCCCC
Q 009477 260 R-EH--ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA--ARGIDIPL 334 (534)
Q Consensus 260 ~-~~--~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~--a~GlDip~ 334 (534)
. .. -...+.+|||+++.-+--.+..+|.+.++....++-..++.+-.+.-..|..|+.+||+.|.-+ =+-..+.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 1 11 2356799999999999999999999999999999999999998888999999999999999654 35667889
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCC------cceEEEEeccccHHHHH
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGR------TGTAFSFVTSEDMAYLL 379 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~------~G~~i~~~~~~e~~~~~ 379 (534)
+.+||.|++|..+.-|...++-.+.... ...|.++++.-|...+.
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHH
Confidence 9999999999999999777765555433 47888898887765443
No 154
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.50 E-value=1e-13 Score=148.91 Aligned_cols=319 Identities=18% Similarity=0.228 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
++.++|.+.+..+.+ +-+.|+...+|-|||..-+ .++..+.++....|+ .||+||+-.|.....+ +..++ .
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtI-sLitYLmE~K~~~GP-~LvivPlstL~NW~~E-f~kWa--P 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTI-SLITYLMEHKQMQGP-FLIIVPLSTLVNWSSE-FPKWA--P 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHH-HHHHHHHHHcccCCC-eEEeccccccCCchhh-ccccc--c
Confidence 689999999977654 3468999999999998744 444566666555676 7999999988775433 33332 2
Q ss_pred CCeEEEEEcCCCHHH--HHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCC
Q 009477 121 DLRISLLVGGDSMES--QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~--~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~ 198 (534)
.+......|...... +........+|+++|++.+..-- .-+.--++.++||||.|+|.+. ...+...+.....
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk---~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDK---ALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYR 543 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCH---HHHhccCCcceeecccccccch--hhHHHHHhhcccc
Confidence 344444444322221 12334478999999998876411 1233456789999999999863 2333444432223
Q ss_pred CCcEEEEEeeCCH----------------------HHHHHHH-----hc-------------------------------
Q 009477 199 NRQTLLFSATLPS----------------------ALAEFAK-----AG------------------------------- 220 (534)
Q Consensus 199 ~~q~ll~SAT~~~----------------------~~~~~~~-----~~------------------------------- 220 (534)
....+++++|+.- .+.++.+ .+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 3444666666410 0000000 00
Q ss_pred -----CC------------------------CCeEEEecc--cccc--------------------CCCceEEE------
Q 009477 221 -----LR------------------------DPHLVRLDV--DTKI--------------------SPDLKLAF------ 243 (534)
Q Consensus 221 -----l~------------------------~~~~i~~~~--~~~~--------------------~~~~~~~~------ 243 (534)
++ .+... ++. .... ..++...+
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~-~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLL-KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCC-cCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 00 00000 000 0000 00000000
Q ss_pred -EEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc---EE
Q 009477 244 -FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT---MF 319 (534)
Q Consensus 244 -~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~---~i 319 (534)
..+....|...|-+++-+....++.++.|+.-.....-+..+|.-.++....++|....++|-..++.|..-.. ..
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 00111234555555665555678999999999888999999999899999999999999999999999997664 35
Q ss_pred EEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceE--EEEecccc
Q 009477 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (534)
Q Consensus 320 LI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~--i~~~~~~e 374 (534)
|..|.....|+|+...+.||.||.-+++..+.|+.-|+.|.|+...+ +.+++...
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 78999999999999999999999999999999999999999987555 44444443
No 155
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.38 E-value=2.1e-11 Score=126.67 Aligned_cols=123 Identities=19% Similarity=0.268 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEE-EEEeCcccccC
Q 009477 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF-LIVTDVAARGI 330 (534)
Q Consensus 252 ~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~i-LI~Tdv~a~Gl 330 (534)
...|-.+|.+....+.++|+|+.-.+..+.+.++|.-.++....+.|+....+|..++.+|+..++-| |++|...+-||
T Consensus 1030 L~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1030 LVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred eeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccc
Confidence 33444444444456889999999889999999999999999999999999999999999999977654 68999999999
Q ss_pred CCCCCCEEEEcCCCCChhhhHHhhccCCCCCCc--ceEEEEecccc
Q 009477 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSED 374 (534)
Q Consensus 331 Dip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~e 374 (534)
|+...+.||+||..|+|..-.|.+.||.|-|+. -++|-+++..-
T Consensus 1110 NLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1110 NLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 999999999999999999999999999999985 45677766553
No 156
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.36 E-value=3.6e-10 Score=122.61 Aligned_cols=319 Identities=22% Similarity=0.264 Sum_probs=207.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
|.. |+..|. +-.+.-...-++...||-|||++..+|+.-... .|+.+.+++..--||.--++++..+-.+.|
T Consensus 78 g~~-~~dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----~gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMR-HFDVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----AGKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCC-hhhHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhc-----CCCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 444 555554 444445566889999999999999999765433 356689999999999988889999888999
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-----------c--
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-----------G-- 182 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-----------~-- 182 (534)
+.+++...+.+..++... -.+||..+|...| ++.+..+ .......+.+.|+||+|.++ .
T Consensus 150 lsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 999999998876655443 5789999999876 3333221 11124467899999999764 1
Q ss_pred ---CChHHHHHHHHHhcCCC---------C--------------------------------------------------
Q 009477 183 ---MGFAEQLHKILGQLSEN---------R-------------------------------------------------- 200 (534)
Q Consensus 183 ---~~~~~~~~~i~~~~~~~---------~-------------------------------------------------- 200 (534)
......+..+...+... +
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 01223333333222110 0
Q ss_pred ----------------------------------------------------------cEEEEEeeCCHHHHHHHHhcCC
Q 009477 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (534)
Q Consensus 201 ----------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l~ 222 (534)
...++|+|.-.+..+|...|.-
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1122333322233333333322
Q ss_pred CCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCH
Q 009477 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (534)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~ 302 (534)
+.. .++........-....+.....+|..+++..+......+.++||-+.+....|.+...|.+.|++..++...-..
T Consensus 388 ~vv--~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 388 DVV--VIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred cee--eccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 221 112211111111111223345678889999888888899999999999999999999999999999888776553
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCC-----------EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEec
Q 009477 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD-----------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~-----------~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
.+-+.+-+.-+. -.|-|||.||+||-||.--. +||--....|-..--|.-||+||.|-+|.+-.|++
T Consensus 466 ~EA~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 466 REAEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HHHHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 333333322222 35889999999999987433 35555544544445699999999999999987777
Q ss_pred ccc
Q 009477 372 SED 374 (534)
Q Consensus 372 ~~e 374 (534)
-.|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 544
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.36 E-value=7.5e-11 Score=127.01 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=179.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhC
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~ 142 (534)
.++.||.|||||.+..-++-+.+. .++.++|+++..+.|+.++...++..+- .++..-.-.++..+. ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 788999999999986543333322 2467899999999999999988876531 122211111111110 01
Q ss_pred CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh------H-HHHHHHHHhcCCCCcEEEEEeeCCHHHHH
Q 009477 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF------A-EQLHKILGQLSENRQTLLFSATLPSALAE 215 (534)
Q Consensus 143 ~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~------~-~~~~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (534)
..+-+++..+.|..+. .-.++++++||+||+-..+..-| . +.+..+...+.....+|++-||+.....+
T Consensus 121 ~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 3456677777775442 23477899999999986654312 1 22222334455677899999999999999
Q ss_pred HHHhcCCCCeEEEeccccccCCCceEEEEEech-----------------------------------hhHHHHHHHHHH
Q 009477 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-----------------------------------EEKHAALLYMIR 260 (534)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~k~~~L~~~l~ 260 (534)
|....-++..+..+..+-....-.......++. ..........|.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 998865543332222111100000000000000 011223445555
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC--CEE
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--DNV 338 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v--~~V 338 (534)
..+..++++-||++|...++.+++.......++..++|.-+..+ ++.| ++.+|+|-|+++.-|+++... +-|
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEeccchhhceEE
Confidence 56677899999999999999999999988888888887655552 2333 468899999999999999743 223
Q ss_pred EEcCCC----CChhhhHHhhccCCCCCCcceEEEEecc
Q 009477 339 INWDFP----PKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 339 I~~~~p----~s~~~~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
.-|=-| .+..+..|.+||+-.- ...+.+++++.
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 333112 3455689999998544 34566666654
No 158
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.35 E-value=4.1e-11 Score=120.16 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=88.3
Q ss_pred eEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEEEE-EeCcccccCCCCCCCEEEEcCCCC
Q 009477 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLI-VTDVAARGIDIPLLDNVINWDFPP 345 (534)
Q Consensus 268 ~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~iLI-~Tdv~a~GlDip~v~~VI~~~~p~ 345 (534)
+.|||.......+.+.-.|.+.|+.|+-+.|+|+..+|...++.|.+. ++.|++ +-...+--+|+....+|...|+=|
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 556666665666666667777899999999999999999999999875 566654 447777788999999999999989
Q ss_pred ChhhhHHhhccCCCCCC--cceEEEEeccccH
Q 009477 346 KPKIFVHRVGRAARAGR--TGTAFSFVTSEDM 375 (534)
Q Consensus 346 s~~~~~qr~GR~gR~g~--~G~~i~~~~~~e~ 375 (534)
++..-.|...|..|.|+ +-.++.|+..+..
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 99999999999999886 4677888877654
No 159
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.33 E-value=9.5e-11 Score=127.30 Aligned_cols=120 Identities=20% Similarity=0.344 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc--EEEEEeCcccccCCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT--MFLIVTDVAARGIDI 332 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~--~iLI~Tdv~a~GlDi 332 (534)
|.-+|++....+.++|||+.-....+-+..+|.-.|+-...++|...-++|...+++|..+.. -.+++|.....|||+
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 333333333467899999999999999999999999999999999999999999999988652 456799999999999
Q ss_pred CCCCEEEEcCCCCChhhhHHhhccCCCCCCc--ceEEEEecccc
Q 009477 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSED 374 (534)
Q Consensus 333 p~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~e 374 (534)
.+.|.||+||.-|++.--.|.-.|+.|.|+. -..|-|++.+-
T Consensus 1345 tgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1345 TGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999999999987777766666666654 45677787653
No 160
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.33 E-value=4.5e-11 Score=124.49 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHh-cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc--CCcEEEE-Ee
Q 009477 248 QEEKHAALLYMIREH-ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLI-VT 323 (534)
Q Consensus 248 ~~~k~~~L~~~l~~~-~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~--g~~~iLI-~T 323 (534)
..-|...++..+... ...+++++|...-.....-+...+.+.|.....+||.....+|..+++.|.. |..+|++ .-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 344666666666655 3455566665555555666777888899999999999999999999999974 4456654 44
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEE
Q 009477 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367 (534)
Q Consensus 324 dv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i 367 (534)
...+-|+|+-+.+|+|..|+.|+|..=-|...|.-|.|++..++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 67789999999999999999999999999999999999876553
No 161
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=8.9e-12 Score=107.35 Aligned_cols=139 Identities=22% Similarity=0.290 Sum_probs=82.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (534)
+|+-.++...+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.++.. .+++. ..-.. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~-~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM-R---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-c----
Confidence 35557889999999998766555544443 3678999999999999988776543 22222 11111 1
Q ss_pred HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcEEEEEeeCCHHHHHH
Q 009477 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEF 216 (534)
Q Consensus 139 ~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~ 216 (534)
...++.-|-|+|.+.+.+.+.+ .....++++||+||||-+-.... ...+... .. .....+|++|||+|.....|
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---SS
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCCCC
Confidence 1235667899999998888765 46678999999999997543321 1122222 11 23467999999999765433
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.30 E-value=3e-09 Score=121.10 Aligned_cols=299 Identities=20% Similarity=0.163 Sum_probs=164.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+..+++--||||||++.+..+ ..+... ...+.+++|+-+++|-.|+.+.++.++....... ...+..+..+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 459999999999998755333 233333 3567899999999999999999999875433222 345556666666
Q ss_pred hCC-CCEEEECchHHHHHHHhcCCCCC-CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHH-H
Q 009477 141 AQN-PDIIIATPGRLMHHLSEVEDMSL-KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF-A 217 (534)
Q Consensus 141 ~~~-~~IiV~Tp~~l~~~l~~~~~~~l-~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~-~ 217 (534)
... ..|+|+|-..|-........... .+=-+||+|||||.-. |.. ...+-..+ ++...++||+||--.-..- .
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G~~--~~~~~~~~-~~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-GEL--AKLLKKAL-KKAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc-cHH--HHHHHHHh-ccceEEEeeCCccccccccch
Confidence 644 48999999998877765311111 2223789999999442 322 22223333 3578999999973211111 0
Q ss_pred HhcCCCC-eEEEeccccccCCCceEEEEEech--------h-h-----------------H------------------H
Q 009477 218 KAGLRDP-HLVRLDVDTKISPDLKLAFFTLRQ--------E-E-----------------K------------------H 252 (534)
Q Consensus 218 ~~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~~--------~-~-----------------k------------------~ 252 (534)
..-.+++ ..+.+.........+...|..... . + + .
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 1111111 111111111111111111111100 0 0 0 0
Q ss_pred H---HHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCC---------ce-------eecCCC------CHHHHHH
Q 009477 253 A---ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE---------PS-------VCYGDM------DQDARKI 307 (534)
Q Consensus 253 ~---~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~---------~~-------~l~g~~------~~~~r~~ 307 (534)
. .+..........+.++.+.+.++..+..+.+........ .. ....+. ....++.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKDEKKD 582 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHHHHhh
Confidence 0 011111111223556777777777444333332221000 00 000011 1112233
Q ss_pred HHHHH--hcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCC--C--CcceEEEEec
Q 009477 308 HVSRF--RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--G--RTGTAFSFVT 371 (534)
Q Consensus 308 ~~~~F--~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~--g--~~G~~i~~~~ 371 (534)
...+| .....++||++||+-.|+|-|.+. .+..|-|.-....+|.+.|+.|. + ..|.++.|+.
T Consensus 583 ~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 583 LIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 33443 345689999999999999999755 55668888888999999999996 3 2377777766
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.28 E-value=2.4e-11 Score=121.59 Aligned_cols=155 Identities=21% Similarity=0.183 Sum_probs=95.1
Q ss_pred HHHHHHHHHh-------------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 49 IQRKTMPLIL-------------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 49 ~Q~~ai~~il-------------~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
+|.+++..++ ..+.++++..+|+|||...+..+..............+||+||. .+..||...+.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777776553 23569999999999998876554422222211112359999999 888999999999
Q ss_pred hhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHH-----HHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHH
Q 009477 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-----HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~-----~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~ 190 (534)
+.....+++..+.|+..............+++|+|++.+. ..... +.--++++||+||+|.+-+.. ....
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~~ 154 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKRY 154 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--cccc
Confidence 8865567777776655122222222356889999999998 22222 222358999999999986443 3333
Q ss_pred HHHHhcCCCCcEEEEEeeCC
Q 009477 191 KILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 191 ~i~~~~~~~~q~ll~SAT~~ 210 (534)
..+..+. ....+++||||-
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccc-cceEEeeccccc
Confidence 3444454 677899999973
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.25 E-value=1.8e-10 Score=132.42 Aligned_cols=125 Identities=21% Similarity=0.331 Sum_probs=108.0
Q ss_pred hHHHHHHHHH-HHhcCCCC--eEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC--CcEEEEEeC
Q 009477 250 EKHAALLYMI-REHISSDQ--QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR--KTMFLIVTD 324 (534)
Q Consensus 250 ~k~~~L~~~l-~~~~~~~~--~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g--~~~iLI~Td 324 (534)
.|...+..++ ......+. +++||.......+-+...|...++....++|+++...|...++.|.++ ..-+++.|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4666676777 56566677 999999999999999999999998899999999999999999999996 344567778
Q ss_pred cccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcce--EEEEecccc
Q 009477 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSED 374 (534)
Q Consensus 325 v~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~--~i~~~~~~e 374 (534)
+...|+|+-..++||.+|..+++....|...|+.|.|++.. ++.+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999998754 466676664
No 165
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=9.4e-10 Score=111.54 Aligned_cols=335 Identities=20% Similarity=0.251 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEE-EcCCCChH--HHHHHHHHHHHhhhcCC--------------------------CCC
Q 009477 43 YKVPTPIQRKTMPLILSGADVVA-MARTGSGK--TAAFLVPMLQRLNQHVP--------------------------QGG 93 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~~~d~i~-~a~TGsGK--T~~~l~p~l~~l~~~~~--------------------------~~g 93 (534)
=..+|+.|.+.+..+.+.+|++. ....+.|+ +-+|++-+++++.+... -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 35799999999998889999775 33335565 56788888877632110 134
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCC---------eEEEEEcCC--------CHHHHHHHH----------------
Q 009477 94 VRALILSPTRDLALQTLKFTKELGRYTDL---------RISLLVGGD--------SMESQFEEL---------------- 140 (534)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l---------~~~~~~gg~--------~~~~~~~~~---------------- 140 (534)
++|||+||+|+-|..+.+.+..+..+.+- +...-++|. ...+.++.+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 78999999999999999988776433221 111111210 000111100
Q ss_pred ---------hCCCCEEEECchHHHHHHHhcC----CC-CCCCeeEEEEcCCCccccCChHHHHHHHHHhc---CCC----
Q 009477 141 ---------AQNPDIIIATPGRLMHHLSEVE----DM-SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL---SEN---- 199 (534)
Q Consensus 141 ---------~~~~~IiV~Tp~~l~~~l~~~~----~~-~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~---~~~---- 199 (534)
....||+||+|=-|--.+.+.. .+ .++.+.++|+|-||-++...| +.+..|+..+ |..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 1357999999987776665211 12 378899999999998774432 3334444433 322
Q ss_pred -----------------CcEEEEEeeCCHHHHHHHHhcCCCCe-EEEecc---cccc---CCCceEEEE--Eech-----
Q 009477 200 -----------------RQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV---DTKI---SPDLKLAFF--TLRQ----- 248 (534)
Q Consensus 200 -----------------~q~ll~SAT~~~~~~~~~~~~l~~~~-~i~~~~---~~~~---~~~~~~~~~--~~~~----- 248 (534)
+|+++||+--.+.+..+...+..+.. .+.... ...+ ...+.+.|. .+..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 48999999888887777776665431 111110 0000 011112221 1111
Q ss_pred hhHHHHHHHHHH-HhcC-CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc
Q 009477 249 EEKHAALLYMIR-EHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (534)
Q Consensus 249 ~~k~~~L~~~l~-~~~~-~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~ 326 (534)
+.+.......+- ...+ ....+||+.++.-+--++..++++.++....++...++..-.+.-+-|-.|...+|+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 222222222111 1111 24568999999999999999999998888888877666666666778999999999999654
Q ss_pred --cccCCCCCCCEEEEcCCCCChhhh---HHhhccCCCCCC----cceEEEEeccccHHHH
Q 009477 327 --ARGIDIPLLDNVINWDFPPKPKIF---VHRVGRAARAGR----TGTAFSFVTSEDMAYL 378 (534)
Q Consensus 327 --a~GlDip~v~~VI~~~~p~s~~~~---~qr~GR~gR~g~----~G~~i~~~~~~e~~~~ 378 (534)
-|-.+|.+|..||.|.+|..|.-| +.+.+|+.-.|+ .-.|.++++.-|.-.+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 477899999999999999999887 455556544442 1356677777665443
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.15 E-value=3.7e-10 Score=112.04 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=58.4
Q ss_pred CCCCCcHHHHHHH----HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 42 GYKVPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 42 g~~~~~~~Q~~ai----~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.|. |+|.|.+.+ ..+..|.++++.||||+|||++++.|++..+...... .+.+++|.++|..+..|....+++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 455 699999944 4555688999999999999999999999876653221 2347999999999999987777654
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.15 E-value=3.7e-10 Score=112.04 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=58.4
Q ss_pred CCCCCcHHHHHHH----HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 42 GYKVPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 42 g~~~~~~~Q~~ai----~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.|. |+|.|.+.+ ..+..|.++++.||||+|||++++.|++..+...... .+.+++|.++|..+..|....+++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 455 699999944 4555688999999999999999999999876653221 2347999999999999987777654
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.96 E-value=1.6e-08 Score=108.24 Aligned_cols=332 Identities=18% Similarity=0.196 Sum_probs=188.0
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHhhccCCCeEEEEEcCCCH
Q 009477 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRISLLVGGDSM 133 (534)
Q Consensus 55 ~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~~l~~~~~~gg~~~ 133 (534)
..+..++-+++.+.||.|||.-+.--+++.+.+....--..+.+--|+|-.+.-+++. +++-+...+-.++.-.--.+.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa 467 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSA 467 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccc
Confidence 4444566689999999999999988888888876544344577777998888877763 333332222222111110000
Q ss_pred HHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHH
Q 009477 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (534)
Q Consensus 134 ~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~ 212 (534)
.. ...-.|..+|-|-++..++. -+..+.++|+||.|+..- ..|...+.+=+........++++|||+..+
T Consensus 468 ~p-----rpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 468 TP-----RPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTD 538 (1282)
T ss_pred cc-----ccccceeeeccchhhhhhhh----cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchh
Confidence 00 01235899999999888764 366788999999997542 223333333222233334445555554322
Q ss_pred --------------------HHHHHHhcCCCC-eEEEe---------cccc--ccCC----Cc------------eEEEE
Q 009477 213 --------------------LAEFAKAGLRDP-HLVRL---------DVDT--KISP----DL------------KLAFF 244 (534)
Q Consensus 213 --------------------~~~~~~~~l~~~-~~i~~---------~~~~--~~~~----~~------------~~~~~ 244 (534)
+..|....+..+ ..+.- +.+. ...+ +. .....
T Consensus 539 ~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~ 618 (1282)
T KOG0921|consen 539 LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS 618 (1282)
T ss_pred hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhh
Confidence 111221111100 00000 0000 0000 00 00000
Q ss_pred EechhhHHHHHHHHHHHhc---CCCCeEEEEEcChhhHHHHHHHHHHc-------CCCceeecCCCCHHHHHHHHHHHhc
Q 009477 245 TLRQEEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFRA 314 (534)
Q Consensus 245 ~~~~~~k~~~L~~~l~~~~---~~~~~~IVF~~t~~~~e~l~~~L~~~-------~~~~~~l~g~~~~~~r~~~~~~F~~ 314 (534)
.....+..-.|.+.+...+ +-.+-++||.+-......+...|... .+.+..+|+.+...+..++.+....
T Consensus 619 ~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 619 RLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred cchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 0000111122223222221 23567899999988888887766542 4677888998888888888888888
Q ss_pred CCcEEEEEeCcccccCCCCCCCEEEEcCCC------------------CChhhhHHhhccCCCCCCcceEEEEeccccHH
Q 009477 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFP------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (534)
Q Consensus 315 g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p------------------~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~ 376 (534)
|..++++.|.++...+.+-++..||..+.- .+....+||.||+||. ++|.|+.+++.--
T Consensus 699 gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ar-- 775 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRAR-- 775 (1282)
T ss_pred cccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHH--
Confidence 999999999999999998887777744321 2344569999999996 6788877766432
Q ss_pred HHHHHHHHhCCCccCCCChHHHH
Q 009477 377 YLLDLHLFLSKPIRAAPSEEEVL 399 (534)
Q Consensus 377 ~~~~l~~~~~~~~~~~p~~~~~~ 399 (534)
|..++...-.++...|..+..+
T Consensus 776 -F~~l~~~~t~em~r~plhemal 797 (1282)
T KOG0921|consen 776 -FEALEDHGTAEMFRTPLHEIAL 797 (1282)
T ss_pred -HHHHHhcCcHhhhcCccHHHHh
Confidence 2233333333344444444433
No 169
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.90 E-value=1e-07 Score=102.60 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHH----------------------cCCCceeecCCCCHHHHHHHH
Q 009477 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIHV 309 (534)
Q Consensus 252 ~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~----------------------~~~~~~~l~g~~~~~~r~~~~ 309 (534)
+-.|+++|+..-.-+.+.|||..+-...+.+..+|.. .|.....|.|......|+...
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 3455666666555688999999998888888877763 134567889999999999999
Q ss_pred HHHhcCC----cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceE--EEEeccc
Q 009477 310 SRFRARK----TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSE 373 (534)
Q Consensus 310 ~~F~~g~----~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~--i~~~~~~ 373 (534)
+.|.+-. .-.||+|.+.+-|+|+-..+.||.||-.|+|..-+|.+=|+-|.|+.--| |-|+...
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 9998632 23689999999999999999999999999999999999999999986544 4555443
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.67 E-value=5.3e-07 Score=87.45 Aligned_cols=132 Identities=19% Similarity=0.282 Sum_probs=96.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..|+. |++.|.-+.=.+..|+ |+...||-|||++..+|+.-... .|..|-|++.+..||..=++++..+-+.
T Consensus 73 ~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 73 TLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-----QGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----TSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-----hcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 35666 9999999886666665 99999999999988888766544 3677999999999999999999998889
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHH-HHHHhc----CC-CCCCCeeEEEEcCCCccc
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-HHLSEV----ED-MSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~-~~l~~~----~~-~~l~~~~~iViDEah~l~ 181 (534)
.|+.++.+.++...++.... -.++|+++|.+.+- +.+... .. .....+.++|+||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999998775543333 34679999998874 444431 11 114678899999999766
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.56 E-value=6.4e-07 Score=99.83 Aligned_cols=144 Identities=20% Similarity=0.322 Sum_probs=88.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-----H-hhc-c--CCCeEEEEEcCC
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-----E-LGR-Y--TDLRISLLVGGD 131 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-----~-~~~-~--~~l~~~~~~gg~ 131 (534)
.++.+..+||+|||.+|+-.|++..... .-.++||+||+.++...+.+.++ . |.. + ..+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 3688999999999999998888776554 23569999999999988887654 2 211 1 124444444332
Q ss_pred -------CHHHHHHHHhC-------CCCEEEECchHHHHHHH-hc---------CCCCCCCe----eEEEEcCCCccccC
Q 009477 132 -------SMESQFEELAQ-------NPDIIIATPGRLMHHLS-EV---------EDMSLKSV----EYVVFDEADCLFGM 183 (534)
Q Consensus 132 -------~~~~~~~~~~~-------~~~IiV~Tp~~l~~~l~-~~---------~~~~l~~~----~~iViDEah~l~~~ 183 (534)
++....+.... ...|+|+|-++|..-.. +. ...+++.+ -+||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 22233222222 46899999998854211 00 00122222 37999999998542
Q ss_pred ChHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 184 GFAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 184 ~~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
...+..| ..+.+.+ ++.+|||.+.
T Consensus 217 --~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 --NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred --hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2234444 4443333 5789999976
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.49 E-value=3.7e-06 Score=93.66 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=56.4
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCC
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~ 210 (534)
....|+++||..|..-+.. +.++++.+..|||||||++.+..-...+.++++...+..-+.+|||.|.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4567999999988665554 5799999999999999999887767777788877777778999999985
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.46 E-value=8.2e-07 Score=85.18 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhh----cCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQ----HVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d-~i~~a~TGsGKT~~~l~p~l~~l~~----~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
++++.|.+|+..++.... .++.||+|+|||.+.. -++..+.. .....+.++|+++||..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999998 9999999999996544 33334411 1123577899999999999998887666
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.34 E-value=2.6e-06 Score=79.79 Aligned_cols=123 Identities=22% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~--d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
++++-|++++..++.+. -+++.|+.|+|||.+ +..+.+.+.. .|.++++++||...+..+.+.. ++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~~-------~~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----AGKRVIGLAPTNKAAKELREKT-------GI 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----TT--EEEEESSHHHHHHHHHHH-------TS
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----CCCeEEEECCcHHHHHHHHHhh-------Cc
Confidence 47899999999997654 377889999999985 3344444444 3678999999998887755441 11
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcC---CCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCC-
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~---~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~- 198 (534)
.+ .|-.+++....... ...+...++||||||-.+. ...+..++...+.
T Consensus 69 ~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 EA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKS 120 (196)
T ss_dssp -E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-
T ss_pred ch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhc
Confidence 11 22222221111000 0114556799999998755 3456667777666
Q ss_pred CCcEEEEEe
Q 009477 199 NRQTLLFSA 207 (534)
Q Consensus 199 ~~q~ll~SA 207 (534)
+.+++++-=
T Consensus 121 ~~klilvGD 129 (196)
T PF13604_consen 121 GAKLILVGD 129 (196)
T ss_dssp T-EEEEEE-
T ss_pred CCEEEEECC
Confidence 455554443
No 175
>PRK10536 hypothetical protein; Provisional
Probab=98.30 E-value=1.5e-05 Score=76.49 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH-----------HH
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL-----------QT 109 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~-----------Q~ 109 (534)
.++...+..|...+..+.++..+++.|++|+|||+..+...++.+... .-.+++|.-|+.+... -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 466678899999999988888899999999999998887777666442 2345666667654211 11
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCHHHHHHHH--hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHH
Q 009477 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL--AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (534)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~--~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~ 187 (534)
.-++..+-.... .+.|.. ..+.+ .....|-|.... ++ ...++++ ++||+|||+.+. ..
T Consensus 132 ~p~~~pi~D~L~----~~~~~~----~~~~~~~~~~~~Iei~~l~----ym---RGrtl~~-~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 132 APYFRPVYDVLV----RRLGAS----FMQYCLRPEIGKVEIAPFA----YM---RGRTFEN-AVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHH----HHhChH----HHHHHHHhccCcEEEecHH----Hh---cCCcccC-CEEEEechhcCC----HH
Confidence 111111100000 001111 11111 122345555432 22 2344544 799999999865 37
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 009477 188 QLHKILGQLSENRQTLLF 205 (534)
Q Consensus 188 ~~~~i~~~~~~~~q~ll~ 205 (534)
++..++.+++.+.++++.
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 788888999888876653
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.29 E-value=7.8e-07 Score=82.87 Aligned_cols=139 Identities=23% Similarity=0.325 Sum_probs=77.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC-
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL- 122 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l- 122 (534)
+..|+.|..++..++..+-+++.|+.|||||+.++..+++.+... .-.+++|.-|..+... +++-..|-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~~~-------~lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEAGE-------DLGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--TT-----------SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCCcc-------ccccCCCCH
Confidence 456899999999999888899999999999999999998888763 3457888888765311 11100000
Q ss_pred --eEE-----------EEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHH
Q 009477 123 --RIS-----------LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (534)
Q Consensus 123 --~~~-----------~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~ 189 (534)
+.. .+.+... .+.+.....|-+.+++.+. ...+++ .+||+|||+.+. ..++
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-------Grt~~~-~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-------GRTFDN-AFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-------T--B-S-EEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-------Cccccc-eEEEEecccCCC----HHHH
Confidence 000 0001111 1222234566666654332 344544 799999999865 5678
Q ss_pred HHHHHhcCCCCcEEEEEee
Q 009477 190 HKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 190 ~~i~~~~~~~~q~ll~SAT 208 (534)
..++.++..+++++++.-.
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 8899999988887775443
No 177
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.29 E-value=0.00016 Score=79.67 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 44 KVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
..+++.|..|+..++.. ..+++.||+|+|||.+..-.+.+ +.. .|.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~-~~~----~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQ-LVK----RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHH-HHH----cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999998876 56889999999999865433333 332 366899999999999998887765
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.26 E-value=7e-05 Score=81.08 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=40.5
Q ss_pred CcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCC
Q 009477 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (534)
Q Consensus 316 ~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~ 360 (534)
..+.+++-..+-+|.|-|+|=.+.-.....|...=.|-+||.-|-
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 478899999999999999999998888888888889999999983
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.24 E-value=3.5e-06 Score=76.72 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHcCC--CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC--cccccCCCCC--CCEE
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNV 338 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~~~--~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td--v~a~GlDip~--v~~V 338 (534)
.++.+|||++|....+.+.+.+..... ....+.. +...+...++.|++++..||+++. ..++|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999999876532 1122222 245678889999999999999998 9999999996 6779
Q ss_pred EEcCCCCC-hhh-----------------------------hHHhhccCCCCCCcceEEEEecc
Q 009477 339 INWDFPPK-PKI-----------------------------FVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 339 I~~~~p~s-~~~-----------------------------~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
|...+|.. +.+ ..|.+||+-|...+--++.+++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99898842 211 28899999998765444445544
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.11 E-value=3.3e-05 Score=75.35 Aligned_cols=169 Identities=18% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEE
Q 009477 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (534)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il----------~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~L 97 (534)
+.|++.++ +.| .++..|.+++-..- .+..+++-..||.||--...--+++.+... .++++
T Consensus 26 ~~lp~~~~----~~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r~v 95 (303)
T PF13872_consen 26 LHLPEEVI----DSG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKRAV 95 (303)
T ss_pred cCCCHHHH----hcc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCceE
Confidence 34555443 334 46899999885442 134588899999999877666677776653 34699
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcC----C-------CCC
Q 009477 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE----D-------MSL 166 (534)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~----~-------~~l 166 (534)
+++.+-.|-......++.++.. .+.+..+..-... ....-...|+++|+..|...-.... . +.-
T Consensus 96 wvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~ 170 (303)
T PF13872_consen 96 WVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGE 170 (303)
T ss_pred EEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhc
Confidence 9999999999988888888744 3333333221100 0012245699999998876643100 0 001
Q ss_pred CCeeEEEEcCCCccccCCh--------HHHHHHHHHhcCCCCcEEEEEeeCCHH
Q 009477 167 KSVEYVVFDEADCLFGMGF--------AEQLHKILGQLSENRQTLLFSATLPSA 212 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~--------~~~~~~i~~~~~~~~q~ll~SAT~~~~ 212 (534)
+.=++|||||||.+-+..- .....++-..+| +.+++..|||--.+
T Consensus 171 dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 171 DFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred CCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 2235899999999876532 234445556676 45599999996544
No 181
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.07 E-value=2.4e-06 Score=93.77 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=147.4
Q ss_pred CCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCe
Q 009477 45 VPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~ 123 (534)
...|+|.+.+..+.. ..++++-+|||+|||.+|-+.++..+... ++.++++++|-.+|+....+....--...|++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCCce
Confidence 345566666543322 45799999999999999999988877765 46789999999999988776444332334888
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC-CCCCCeeEEEEcCCCccccCChHHHHHHH-------HHh
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFAEQLHKI-------LGQ 195 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-~~l~~~~~iViDEah~l~~~~~~~~~~~i-------~~~ 195 (534)
+.-+.|....+.. . -..++++|+||++...+...... --+.+++.+|+||.|.+.+. ....+..+ -..
T Consensus 1004 ~ie~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eEeccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccc
Confidence 9999887765522 1 24689999999998877653222 23678999999999987754 12222211 122
Q ss_pred cCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEec-------cccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCe
Q 009477 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD-------VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQ 268 (534)
Q Consensus 196 ~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~ 268 (534)
.++..+.+++|--+ .....++...-..+. +... .+........+.| ..+...+.......++. ..+..+
T Consensus 1080 t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~~~~-cprm~smnkpa~qaik~-~sp~~p 1155 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPGQHY-CPRMMSMNKPAFQAIKT-HSPIKP 1155 (1230)
T ss_pred cCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCCCcccccCCceEeecCCCchhc-chhhhhcccHHHHHHhc-CCCCCc
Confidence 33344555554333 222233332222221 1111 0111111111111 11112222333444443 357889
Q ss_pred EEEEEcChhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCC
Q 009477 269 TLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARK 316 (534)
Q Consensus 269 ~IVF~~t~~~~e~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~ 316 (534)
++||++++....+-+.-|.. ..-+...++ ++..+-+.++..-+...
T Consensus 1156 ~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1156 VLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTN 1205 (1230)
T ss_pred eEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccc
Confidence 99999988766554443322 122233343 34556666666655544
No 182
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.98 E-value=0.00047 Score=73.76 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=85.6
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHcCCC------------------ceeecCCCCHHHHHHHHHHHhcCC---cEEEEEeC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREEGLE------------------PSVCYGDMDQDARKIHVSRFRARK---TMFLIVTD 324 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~~~~------------------~~~l~g~~~~~~r~~~~~~F~~g~---~~iLI~Td 324 (534)
+.++|||.........+.+.|.+..++ ...+.|..+...|++.+.+|..-- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 456888888888888888888764322 235678888899999999997632 35788999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEE--EEeccc
Q 009477 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF--SFVTSE 373 (534)
Q Consensus 325 v~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i--~~~~~~ 373 (534)
...-|+|+=..+-+|.+|..+++..-.|.+-|+-|.|+...|+ -++...
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 9999999988888999999999999999999999999875554 445444
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.98 E-value=2.1e-05 Score=80.65 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=67.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
-+++.|..|||||.+.+-.+. .+. ....+.+++++++...|...+.+.+..-.. .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~--~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQ--NSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------P 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhh--ccccCCceEEEEecchHHHHHHHHHhhhcc----------------------c
Confidence 378999999999997663333 331 123467799999999999887776654320 0
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-------hHHHHHHHHHh
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-------FAEQLHKILGQ 195 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-------~~~~~~~i~~~ 195 (534)
......+..+..+...+.. .......+++|||||||++...+ ....+..+++.
T Consensus 58 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0112233334444332221 23456789999999999998731 24566666665
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=97.97 E-value=3.4e-05 Score=60.09 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=42.4
Q ss_pred HHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 009477 53 TMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 53 ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
++...+.+ +-+++.|++|||||...+-.+.+.+...... +.++++++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 44433343 4466699999999977665555554333333 778999999999999988776
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.96 E-value=0.00031 Score=74.13 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=65.4
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 38 l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
....|+..++.-|..|+.+++++.-.++.||+|+|||.+..--++ ++.+. .+.++||.+|+---+.|+++.+.+.+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVy-hl~~~---~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ---HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHH-HHHHh---cCCceEEEcccchhHHHHHHHHHhcC
Confidence 334577789999999999999999999999999999987554344 44433 24469999999999999888777654
Q ss_pred ccCCCeEEEEEc
Q 009477 118 RYTDLRISLLVG 129 (534)
Q Consensus 118 ~~~~l~~~~~~g 129 (534)
+++..+..
T Consensus 479 ----LKVvRl~a 486 (935)
T KOG1802|consen 479 ----LKVVRLCA 486 (935)
T ss_pred ----ceEeeeeh
Confidence 77666654
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.95 E-value=0.00015 Score=80.93 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..++ .+++.|++|+..+..++-+++.|+.|+|||.+. -.+++.+... .....+++++||-.-|..+.+.
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e~------- 387 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRLGEV------- 387 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHHHHh-------
Confidence 3465 499999999999988888999999999999854 2333333322 0115789999998777654332
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCC
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~ 199 (534)
++.... ...... ...+ +..... . .-.....++||+|||+.+.. ..+..+++.++..
T Consensus 388 ~g~~a~------Tih~lL---~~~~-------~~~~~~-~---~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 388 TGLTAS------TIHRLL---GYGP-------DTFRHN-H---LEDPIDCDLLIVDESSMMDT----WLALSLLAALPDH 443 (720)
T ss_pred cCCccc------cHHHHh---hccC-------Cccchh-h---hhccccCCEEEEeccccCCH----HHHHHHHHhCCCC
Confidence 122111 111111 0000 000000 0 00123568999999998653 3456677778888
Q ss_pred CcEEEEEee
Q 009477 200 RQTLLFSAT 208 (534)
Q Consensus 200 ~q~ll~SAT 208 (534)
.+++++.=+
T Consensus 444 ~rlilvGD~ 452 (720)
T TIGR01448 444 ARLLLVGDT 452 (720)
T ss_pred CEEEEECcc
Confidence 887775433
No 187
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.93 E-value=6.7e-05 Score=82.02 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=84.1
Q ss_pred eEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-cEE-EEEeCcccccCCCCCCCEEEEcCCCC
Q 009477 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMF-LIVTDVAARGIDIPLLDNVINWDFPP 345 (534)
Q Consensus 268 ~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~-~~i-LI~Tdv~a~GlDip~v~~VI~~~~p~ 345 (534)
+++||..-..-+..+...|...++......|.|....|.+.+..|..+. ..| +++.-...-|+|+-...+|+..|+=+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 7788887777777777777777888888999999999999999998543 233 56778889999999999999999999
Q ss_pred ChhhhHHhhccCCCCCCcceE
Q 009477 346 KPKIFVHRVGRAARAGRTGTA 366 (534)
Q Consensus 346 s~~~~~qr~GR~gR~g~~G~~ 366 (534)
++..--|.+-|+.|-|+.-.+
T Consensus 621 np~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred ChHHHHHHHHHHHHhccccee
Confidence 999999999999999986554
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.79 E-value=0.00021 Score=77.96 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=85.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (534)
..++|+.|+-..+.++-+++.|++|+|||.+.. -++..+.+.......++++..||..-|..+.+.+.......++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 358999999999999999999999999998643 22223322111234679999999988888777665433222110
Q ss_pred EEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc-----CCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCC
Q 009477 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (534)
Q Consensus 126 ~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~-----~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~ 200 (534)
+.. ......-..|-.+|+...-.. ...+.-..++||+||+-.+. ...+..+++.+++..
T Consensus 230 --------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 --------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred --------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 000 000111123333333211000 01112346899999997643 455677788888888
Q ss_pred cEEEEEee
Q 009477 201 QTLLFSAT 208 (534)
Q Consensus 201 q~ll~SAT 208 (534)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 87776543
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.79 E-value=5.4e-05 Score=79.25 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 009477 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d-~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (534)
.+.+-|..|+......++ .++.||+|+|||.+..--+.+.+. .+.++||..||.+-+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-----~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-----QKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-----cCCeEEEEcCchHHHHHHHHH
Confidence 578899999998888766 788999999999985544444433 368899999999988888875
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.79 E-value=0.00035 Score=65.89 Aligned_cols=152 Identities=22% Similarity=0.315 Sum_probs=97.0
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS---GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~---~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
+|+-+..+.+++=.+.. ++. +++.|.+....+.+ |.+.+...-+|.|||.+ ++|++..+... ...-+.+++
T Consensus 4 ~w~p~~~P~wLl~E~e~-~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~LvrviV 77 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVIV 77 (229)
T ss_pred CCCchhChHHHHHHHHc-Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEEc
Confidence 56777777888777653 444 89999999988775 57899999999999998 66877766543 223466677
Q ss_pred CcHHHHHHHHHHHHH-hhccCCCeEEEEE--cCCCH--------HHHHHHHhCCCCEEEECchHHHHHHHhc------CC
Q 009477 101 PTRDLALQTLKFTKE-LGRYTDLRISLLV--GGDSM--------ESQFEELAQNPDIIIATPGRLMHHLSEV------ED 163 (534)
Q Consensus 101 PtreLa~Q~~~~~~~-~~~~~~l~~~~~~--gg~~~--------~~~~~~~~~~~~IiV~Tp~~l~~~l~~~------~~ 163 (534)
|. +|..|+.+.+.. ++.-.+-++..+. -.... ....+.....-.|+++||+.++.+.... ..
T Consensus 78 pk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~ 156 (229)
T PF12340_consen 78 PK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGK 156 (229)
T ss_pred CH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcC
Confidence 74 799999987765 5433333333221 11111 1122233456679999999876543210 00
Q ss_pred C-----------CCCCeeEEEEcCCCcccc
Q 009477 164 M-----------SLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 164 ~-----------~l~~~~~iViDEah~l~~ 182 (534)
. .++...-=|+||+|..+.
T Consensus 157 ~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 157 PEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 023344468999998775
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.77 E-value=0.00037 Score=75.78 Aligned_cols=141 Identities=20% Similarity=0.233 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEE
Q 009477 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (534)
Q Consensus 47 ~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (534)
.++|+.|+..++.++-+++.|+.|+|||.+.. .++..+...... .+.++++.+||---|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 37999999999999999999999999998643 223333221111 12579999999888887776655432221110
Q ss_pred EEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhc-----CCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCC
Q 009477 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (534)
Q Consensus 126 ~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~-----~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~ 200 (534)
... .....+-..|-.+++...... ..-+...+++||||||-.+. ...+..+++.++...
T Consensus 224 --------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 000 001112233433333221100 00112357899999997644 345667788888888
Q ss_pred cEEEEE
Q 009477 201 QTLLFS 206 (534)
Q Consensus 201 q~ll~S 206 (534)
++|++.
T Consensus 288 rlIlvG 293 (586)
T TIGR01447 288 KLILLG 293 (586)
T ss_pred EEEEEC
Confidence 877654
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.61 E-value=0.00035 Score=76.13 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=86.8
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhcC-----------C-------------------
Q 009477 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----------P------------------- 90 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-----------~------------------- 90 (534)
+|+|.|..-+..++. ..+.++..|||+|||++.+-..+.+..... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 489999988876664 578999999999999887655554332110 0
Q ss_pred -CC------CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHH--------------HH-------------
Q 009477 91 -QG------GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME--------------SQ------------- 136 (534)
Q Consensus 91 -~~------g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~--------------~~------------- 136 (534)
.. -+++.+-+-|..-..|+.+.+++.+.. ++.+++-+-+.+. .+
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 01 346677777777788888888776644 3333332211100 00
Q ss_pred -------------------------------------HHHHhCCCCEEEECchHHHHHHHhc-CCCCCCCeeEEEEcCCC
Q 009477 137 -------------------------------------FEELAQNPDIIIATPGRLMHHLSEV-EDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 137 -------------------------------------~~~~~~~~~IiV~Tp~~l~~~l~~~-~~~~l~~~~~iViDEah 178 (534)
-+.+....+||+|.+..|++-..+. ..+++.+ ..|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 0444557899999999998876542 1244544 489999999
Q ss_pred ccc
Q 009477 179 CLF 181 (534)
Q Consensus 179 ~l~ 181 (534)
.+-
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 864
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.0011 Score=75.66 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=77.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 39 KRKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~il~~~d-~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
...|+. +++-|++|+..++.+++ +++.|..|+|||++ +-.+.+.+.. .|.+++.++||---+..+.
T Consensus 341 ~~~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~------- 407 (988)
T PRK13889 341 EARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLE------- 407 (988)
T ss_pred HhcCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHh-------
Confidence 345654 99999999999998665 78999999999986 4444444333 4788999999976554432
Q ss_pred ccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhc-
Q 009477 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL- 196 (534)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~- 196 (534)
...++.. .|-.+++..... ....+...++|||||+-.+.. ..+..++...
T Consensus 408 e~tGi~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~ 458 (988)
T PRK13889 408 GGSGIAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAA 458 (988)
T ss_pred hccCcch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCH----HHHHHHHHhhh
Confidence 1222221 111222211111 112355678999999986553 2344455433
Q ss_pred CCCCcEEEEEee
Q 009477 197 SENRQTLLFSAT 208 (534)
Q Consensus 197 ~~~~q~ll~SAT 208 (534)
+.+.++||+.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 445666665443
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.56 E-value=0.0012 Score=74.28 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
+++..+......++. +++.|++|+..++.+ +-+++.|++|+|||...- .+.+.+.. .|.++++++||---+..
T Consensus 338 ~~~~~~~~~l~~~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 444444443334444 899999999998875 568899999999998633 33333332 37789999999765554
Q ss_pred H
Q 009477 109 T 109 (534)
Q Consensus 109 ~ 109 (534)
+
T Consensus 412 L 412 (744)
T TIGR02768 412 L 412 (744)
T ss_pred H
Confidence 3
No 195
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.46 E-value=0.01 Score=73.20 Aligned_cols=209 Identities=13% Similarity=0.145 Sum_probs=117.6
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
.+++-|++|+..++.+ +-.++.|+.|+|||.+. -.+.+.+.. .|.++++++||-.-+.++.+... +
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~g-------~ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE----QGYEIQIITAGSLSAQELRQKIP-------R 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHhc-------c
Confidence 4899999999999886 45889999999999853 233333322 47889999999876665544321 1
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhc-CCCCc
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQ 201 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~-~~~~q 201 (534)
.. .....+...+... .-..|...++ . +..++..-++||||||-.+.. ..+..++... +.+.+
T Consensus 497 ~A------~Ti~~~l~~l~~~--~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 497 LA------STFITWVKNLFND--DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSK 559 (1960)
T ss_pred hh------hhHHHHHHhhccc--ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCE
Confidence 11 1111222111111 1112222333 1 334566788999999987553 4455666544 46788
Q ss_pred EEEEEeeC-------CHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEc
Q 009477 202 TLLFSATL-------PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVS 274 (534)
Q Consensus 202 ~ll~SAT~-------~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~ 274 (534)
+||+.=+- ...+..+...++. .+.+.........+ .+.......+...+.............++|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~gv~---t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGGVT---TYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCCCc---EEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 88765541 1334444444322 22332211111111 122223344555566555554445557999999
Q ss_pred ChhhHHHHHHHHH
Q 009477 275 TKHHVEFLNVLFR 287 (534)
Q Consensus 275 t~~~~e~l~~~L~ 287 (534)
+..+...|....+
T Consensus 635 t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 635 THREQQDLTQIIR 647 (1960)
T ss_pred CcHHHHHHHHHHH
Confidence 9888777766554
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.45 E-value=0.00034 Score=70.21 Aligned_cols=105 Identities=23% Similarity=0.157 Sum_probs=68.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEE
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (534)
+|+.|.+++.. ....+++.|..|||||.+.+--+...+.... ....++|++++|+..+..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~-- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE-- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc--
Confidence 58899999987 6778999999999999987766665555442 234569999999999999998887754221100
Q ss_pred EEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHH
Q 009477 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLS 159 (534)
Q Consensus 126 ~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~ 159 (534)
................+.|+|-..+...+.
T Consensus 76 ----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll 105 (315)
T PF00580_consen 76 ----SSDNERLRRQLSNIDRIYISTFHSFCYRLL 105 (315)
T ss_dssp ----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHH
T ss_pred ----ccccccccccccccchheeehhhhhhhhhh
Confidence 000011222223346688899887765443
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0054 Score=63.20 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=86.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (534)
+.+++.|+||+|||.+..-.+.. +.......|.++.++. +.|.-+.. +++.++...++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~-~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~~----------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAI-YGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKAI----------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEee-----------
Confidence 35889999999999876533322 2211111345555554 33343333 3566665555544222
Q ss_pred HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcCCC-CcEEEEEeeCCH-HHHH
Q 009477 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSEN-RQTLLFSATLPS-ALAE 215 (534)
Q Consensus 139 ~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~~-~q~ll~SAT~~~-~~~~ 215 (534)
.++..+...+.. +.+.++|++|++.++.... ....+.+++...... ...+.+|||... .+..
T Consensus 240 ----------~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 240 ----------ESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ----------CcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 234445444433 3578999999999876321 235666666655433 456889999853 4444
Q ss_pred HHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHh
Q 009477 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (534)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 262 (534)
.++.+-.- ..-...+-.++...+...++.++...
T Consensus 305 ~~~~~~~~-------------~~~~~I~TKlDet~~~G~~l~~~~~~ 338 (388)
T PRK12723 305 IFHQFSPF-------------SYKTVIFTKLDETTCVGNLISLIYEM 338 (388)
T ss_pred HHHHhcCC-------------CCCEEEEEeccCCCcchHHHHHHHHH
Confidence 55554210 01122233344455666777776654
No 198
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.41 E-value=0.015 Score=65.68 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
..++|-|++|+.. ....+++.|..|||||.+..--+...+..... ...++|+|+-|+..|..+.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-SPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-ChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3599999999974 34579999999999999866555544432221 23579999999999999998887754
No 199
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.40 E-value=0.0027 Score=73.09 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 29 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
++++..+......++. +++-|++|+..+.. ++-+++.|..|+|||++.- ++.+.+.. .|.+++.++||---+.
T Consensus 366 ~v~~~~l~a~~~~~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFARHAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----cCCeEEEEcCcHHHHH
Confidence 5666666665555654 99999999998865 4558899999999998633 44444333 4788999999966554
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHH
Q 009477 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (534)
Q Consensus 108 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~ 187 (534)
.+. ...++....+ .+++..... ....+..-++||||||-.+.. .
T Consensus 440 ~L~-------e~~Gi~a~TI------------------------as~ll~~~~-~~~~l~~~~vlVIDEAsMv~~----~ 483 (1102)
T PRK13826 440 GLE-------KEAGIQSRTL------------------------SSWELRWNQ-GRDQLDNKTVFVLDEAGMVAS----R 483 (1102)
T ss_pred HHH-------HhhCCCeeeH------------------------HHHHhhhcc-CccCCCCCcEEEEECcccCCH----H
Confidence 432 2223332222 111100000 123456677999999986543 3
Q ss_pred HHHHHHHhcC-CCCcEEEEEee
Q 009477 188 QLHKILGQLS-ENRQTLLFSAT 208 (534)
Q Consensus 188 ~~~~i~~~~~-~~~q~ll~SAT 208 (534)
.+..+++..+ .+.+++|+.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4445555554 45666665543
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.34 E-value=0.0012 Score=72.63 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d-~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
..+.|.+.+. -+..++..|++|+-.++..+| .++.|=+|+|||...... +..|.. .|+++|+.+=|..-+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~----~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA----LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH----cCCeEEEEehhhHHH
Confidence 3455555553 344799999999998888766 888999999999864422 222222 478899999998877
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCHHHHH-----------------HHHhCCCCEEEECchHHHHHHHhcCCCCCCCe
Q 009477 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQF-----------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (534)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~-----------------~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~ 169 (534)
..+.-.++.++ +.+..+-.+....... +..-+.+.||.+|-=-+.+.+ +....+
T Consensus 727 DNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~~R~F 797 (1100)
T KOG1805|consen 727 DNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FVNRQF 797 (1100)
T ss_pred HHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hhcccc
Confidence 77666666554 2222222222222111 222356788888854444333 334568
Q ss_pred eEEEEcCCCcccc
Q 009477 170 EYVVFDEADCLFG 182 (534)
Q Consensus 170 ~~iViDEah~l~~ 182 (534)
+++|+|||-.+..
T Consensus 798 D~cIiDEASQI~l 810 (1100)
T KOG1805|consen 798 DYCIIDEASQILL 810 (1100)
T ss_pred CEEEEcccccccc
Confidence 9999999998763
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=97.33 E-value=0.0019 Score=65.32 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=75.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt---reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (534)
-+++.|++|+|||.+....+ ..+.. .|.+++++..- ..-..|+...... .++.+.....+..
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~d------ 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGAD------ 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCC------
Confidence 37789999999998654333 23332 35567666543 3444555444444 3444332221111
Q ss_pred HHhCCCCEEEECchH-HHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHH
Q 009477 139 ELAQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF 216 (534)
Q Consensus 139 ~~~~~~~IiV~Tp~~-l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~ 216 (534)
|.. +.+.+.. ....+.++|++|.+.++. +......+..+.+...+..-++.++||...+....
T Consensus 207 ------------p~~v~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~ 271 (336)
T PRK14974 207 ------------PAAVAYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ 271 (336)
T ss_pred ------------HHHHHHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH
Confidence 111 2222221 122356799999999986 34466777777777777777889999987665555
Q ss_pred HHhc
Q 009477 217 AKAG 220 (534)
Q Consensus 217 ~~~~ 220 (534)
++.+
T Consensus 272 a~~f 275 (336)
T PRK14974 272 AREF 275 (336)
T ss_pred HHHH
Confidence 5544
No 202
>PRK06526 transposase; Provisional
Probab=97.28 E-value=0.00058 Score=66.45 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHH
Q 009477 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (534)
Q Consensus 55 ~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 134 (534)
..+..+.++++.||+|+|||........+. .. .|.++++...+ +|..++... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a-~~----~g~~v~f~t~~-~l~~~l~~~----~----------------- 145 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA-CQ----AGHRVLFATAA-QWVARLAAA----H----------------- 145 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH-HH----CCCchhhhhHH-HHHHHHHHH----H-----------------
Confidence 445567899999999999998655433332 22 35666664332 333332110 0
Q ss_pred HHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcCCCCcEEEEEeeCCHHH
Q 009477 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSAL 213 (534)
Q Consensus 135 ~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~~~q~ll~SAT~~~~~ 213 (534)
.. ++.. ..+.. +..++++||||+|...... -...+..++........+++.|..++...
T Consensus 146 ------~~------~~~~---~~l~~-----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 146 ------HA------GRLQ---AELVK-----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred ------hc------CcHH---HHHHH-----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 00 1111 11211 3457899999999764322 23345566655444456788787776553
No 203
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.27 E-value=0.00077 Score=66.90 Aligned_cols=144 Identities=22% Similarity=0.331 Sum_probs=86.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 41 KGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~--d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
.|+...+-.|+-|+..++.-. -|.+.|+.|||||+.++.+.+++..... .-.+++|-=|+..+.. .+|
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~vpvG~-------dIG- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTVPVGE-------DIG- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCcCccc-------ccC-
Confidence 477777889999999888753 3778999999999999988888776542 2345777778765432 111
Q ss_pred cCCCeEEEEEcC--CCHHHHHHHHhCCCCEEE----ECchHHHHHHHhcCCCCCCC----------eeEEEEcCCCcccc
Q 009477 119 YTDLRISLLVGG--DSMESQFEELAQNPDIII----ATPGRLMHHLSEVEDMSLKS----------VEYVVFDEADCLFG 182 (534)
Q Consensus 119 ~~~l~~~~~~gg--~~~~~~~~~~~~~~~IiV----~Tp~~l~~~l~~~~~~~l~~----------~~~iViDEah~l~~ 182 (534)
.+-|. +++..|...+..+-.++. ++.+.+-..+.+ ..+.+.. -.+||+|||+.+.
T Consensus 294 -------fLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT- 364 (436)
T COG1875 294 -------FLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT- 364 (436)
T ss_pred -------cCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC-
Confidence 12221 122223222222111111 122233333222 2222211 1489999999865
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEE
Q 009477 183 MGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
..++..|+.+..++.+++++.
T Consensus 365 ---pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ---PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ---HHHHHHHHHhccCCCEEEEcC
Confidence 467888999998888877743
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.26 E-value=0.0012 Score=67.97 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 45 VPTPIQRKTMPLI------LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 45 ~~~~~Q~~ai~~i------l~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
+|++.|+.++..+ ..+..+++.|+-|+|||+.+- .+.......+..+++++||---|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-----~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-----AIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-----HHHHHhccccceEEEecchHHHHHhc
Confidence 4789999999888 567889999999999998543 22222222467899999996655443
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.25 E-value=0.0011 Score=57.37 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=13.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
++-+++.|++|+|||...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998654
No 206
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.22 E-value=0.0033 Score=55.38 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCC------CceeecCCCCHHHHHHHHHHHhcCC-cEEEEEeCcccccCCCCC--CCEEEEcCCCCC-h-
Q 009477 279 VEFLNVLFREEGL------EPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL--LDNVINWDFPPK-P- 347 (534)
Q Consensus 279 ~e~l~~~L~~~~~------~~~~l~g~~~~~~r~~~~~~F~~g~-~~iLI~Tdv~a~GlDip~--v~~VI~~~~p~s-~- 347 (534)
.+.+...+...+. ....+.-+.+..+...+++.|++.. ..||++|.-.++|+|+|+ ++.||...+|.. +
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3445555554432 1223333344545788899998765 379999988999999997 567888887731 1
Q ss_pred -----------------------------hhhHHhhccCCCCCCcceEEEEec
Q 009477 348 -----------------------------KIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 348 -----------------------------~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
....|.+||+-|...+--++.+++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 113788899999765433344443
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.19 E-value=0.00053 Score=63.85 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=59.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt---reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (534)
.-.++.|++|+|||...+-.+. ++.. .|.+++++-|. +....+ +....++....
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~-~~~~----~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~----------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY-NYEE----RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA----------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH-HHHH----cCCeEEEEeccccccccCCc-------EecCCCCcccc-----------
Confidence 3468899999999986553333 3322 36788988773 222111 11111221110
Q ss_pred HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 138 ~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
+.+..+..+++.+.. .-.++++||+||+|.+. .+++.++++.+.+....+.+++--
T Consensus 60 --------~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 60 --------IPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred --------eEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 122344445555432 23467899999998642 234556666644444455555543
No 208
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0027 Score=64.89 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=83.3
Q ss_pred CcCCCCCCHHHHHHHHHC---C--CCCC---cHHHHHHHHH----H-------hcCCcEEEEcCCCChHHHHHHHHHHHH
Q 009477 24 GFESLNLSPNVFRAIKRK---G--YKVP---TPIQRKTMPL----I-------LSGADVVAMARTGSGKTAAFLVPMLQR 84 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~---g--~~~~---~~~Q~~ai~~----i-------l~~~d~i~~a~TGsGKT~~~l~p~l~~ 84 (534)
.+..+|+++.+.+.|.+. + ...+ +.+....+.. + ..|..+++.||||+|||......+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356678888887777442 1 2122 2222222211 1 124568899999999999766444333
Q ss_pred hhhcCCCCC-eEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC
Q 009477 85 LNQHVPQGG-VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED 163 (534)
Q Consensus 85 l~~~~~~~g-~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~ 163 (534)
...+ | .++.+++ +...-.--.+.++.|++..++.+.. +.+++.+...+.+
T Consensus 162 ~~~~----G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~---------------------~~~~~~l~~~l~~--- 212 (374)
T PRK14722 162 VMRF----GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA---------------------VKDGGDLQLALAE--- 212 (374)
T ss_pred HHhc----CCCeEEEEe-cccccccHHHHHHHHHHHcCCceEe---------------------cCCcccHHHHHHH---
Confidence 2221 2 3444443 2222111123455555544444332 3344444433332
Q ss_pred CCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcCCCCcEEEEEeeCCHH-HHHHHHhc
Q 009477 164 MSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSA-LAEFAKAG 220 (534)
Q Consensus 164 ~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~~~q~ll~SAT~~~~-~~~~~~~~ 220 (534)
+.+.++|+||++-+..... ..+.+..+.........++.+|||.... +.+.++.|
T Consensus 213 --l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 --LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred --hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 4456889999997643222 2233333322222334578889997543 34444544
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.14 E-value=0.004 Score=54.23 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
++.+++.|++|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 210
>PRK08181 transposase; Validated
Probab=97.14 E-value=0.01 Score=58.22 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=68.9
Q ss_pred CcHHHHHHHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 46 PTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 46 ~~~~Q~~ai~----~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
+...|..++. .+-.++++++.||+|+|||-....... .+.. .|.+++++ +..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~----~g~~v~f~-~~~~L~~~l~~a~~~------ 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGL-ALIE----NGWRVLFT-RTTDLVQKLQVARRE------ 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHH-HHHH----cCCceeee-eHHHHHHHHHHHHhC------
Confidence 3455655552 344678899999999999975442222 2222 35556555 445665554321100
Q ss_pred CeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcCCCC
Q 009477 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENR 200 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~~~ 200 (534)
.+...++.. +.+++++||||.+...... ....+.+++.......
T Consensus 156 ---------------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ---------------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ---------------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 111222222 3457899999998765432 2345666666655556
Q ss_pred cEEEEEeeCCHHHH
Q 009477 201 QTLLFSATLPSALA 214 (534)
Q Consensus 201 q~ll~SAT~~~~~~ 214 (534)
.+++.|-..+..+.
T Consensus 201 s~IiTSN~~~~~w~ 214 (269)
T PRK08181 201 SILITANQPFGEWN 214 (269)
T ss_pred CEEEEcCCCHHHHH
Confidence 66666666655543
No 211
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.09 E-value=0.0035 Score=55.24 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCC---CceeecCCCCHHHHHHHHHHHhcCCc---EEEEEeCc--ccccCCCCC--CCEEEEcCCCCC--
Q 009477 279 VEFLNVLFREEGL---EPSVCYGDMDQDARKIHVSRFRARKT---MFLIVTDV--AARGIDIPL--LDNVINWDFPPK-- 346 (534)
Q Consensus 279 ~e~l~~~L~~~~~---~~~~l~g~~~~~~r~~~~~~F~~g~~---~iLI~Tdv--~a~GlDip~--v~~VI~~~~p~s-- 346 (534)
.+.+.+.+...+. ....+.-..+..+...+++.|++... .||+++.- .++|+|+|+ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4555556655433 11222222222344678888987544 69999877 899999997 567888887742
Q ss_pred --h---------------------------hhhHHhhccCCCCCCcceEEEEec
Q 009477 347 --P---------------------------KIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 347 --~---------------------------~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
+ ....|.+||+-|...+--++.+++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 113889999999866533444443
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.0023 Score=55.29 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
+..+++.|++|+|||.... .+.......+..++++.++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-----~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-----ALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-----HHHhccCCCCCCEEEECCEEcccc
Confidence 4568999999999999654 222222222235788887755433
No 213
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.0046 Score=64.95 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=74.6
Q ss_pred EcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhhccCCCeEEEEEcCCCHH----HHHHHH
Q 009477 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSME----SQFEEL 140 (534)
Q Consensus 66 ~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~~~~~~l~~~~~~gg~~~~----~~~~~~ 140 (534)
...||||||++....|++...+. -...|+.|..-....-+..-+ .......-..-...++|...+ ..+..-
T Consensus 3 ~matgsgkt~~ma~lil~~y~kg----yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKG----YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhc----hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 45799999998887777766543 233677777665555444321 111000000001111111111 011112
Q ss_pred hCCCCEEEECchHHHHHHHhcCCC-----CCCCeeE-EEEcCCCccccC-------------ChHHHHHHHHHhcCCCCc
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDM-----SLKSVEY-VVFDEADCLFGM-------------GFAEQLHKILGQLSENRQ 201 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~-----~l~~~~~-iViDEah~l~~~-------------~~~~~~~~i~~~~~~~~q 201 (534)
..+..|+++|-..|+..+.+.+.- ++.+..+ ++-||||++-.. .+...+.-.++.- +..-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n-kd~~ 157 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN-KDNL 157 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC-CCce
Confidence 346789999999998776653322 2444444 567999997631 1222222222222 2345
Q ss_pred EEEEEeeCCHH
Q 009477 202 TLLFSATLPSA 212 (534)
Q Consensus 202 ~ll~SAT~~~~ 212 (534)
++.+|||.|++
T Consensus 158 ~lef~at~~k~ 168 (812)
T COG3421 158 LLEFSATIPKE 168 (812)
T ss_pred eehhhhcCCcc
Confidence 78899999854
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.017 Score=60.54 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (534)
++.+++.||||+|||.+....+....... .|.++.++.- .|.-+ .+.++.++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~------------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE------------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceE------------
Confidence 44688899999999987654333322011 2455655542 23212 1334444443343322
Q ss_pred HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHh-cCCCCcEEEEEeeCCH-HHH
Q 009477 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQ-LSENRQTLLFSATLPS-ALA 214 (534)
Q Consensus 138 ~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~-~~~~~q~ll~SAT~~~-~~~ 214 (534)
.+.++..+...+.. +.+.++|+||.+-+... ......+..++.. ..+....+++|||... .+.
T Consensus 283 ---------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 283 ---------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ---------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 22344445555543 33679999999866432 2234556666662 2233457889998764 455
Q ss_pred HHHHhc
Q 009477 215 EFAKAG 220 (534)
Q Consensus 215 ~~~~~~ 220 (534)
..+..+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 555544
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.012 Score=56.88 Aligned_cols=109 Identities=17% Similarity=0.288 Sum_probs=60.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
..+++.|++|+|||.... .+...+.. .|..++++ +..+|...+... +. .
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~----~g~~v~~i-t~~~l~~~l~~~---~~-~--------------------- 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL----RGKSVLII-TVADIMSAMKDT---FS-N--------------------- 148 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEE-EHHHHHHHHHHH---Hh-h---------------------
Confidence 469999999999997644 33333333 35667666 333333322211 10 0
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHH-HHHHHHHhcC-CCCcEEEEEeeCCHHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE-QLHKILGQLS-ENRQTLLFSATLPSALA 214 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~-~~~~i~~~~~-~~~q~ll~SAT~~~~~~ 214 (534)
. + .+...+++. +.+++++||||.+......+.. .+..|+..-. ....+++.|---+.++.
T Consensus 149 -~--~---~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 149 -S--E---TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred -c--c---ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 0 122233322 3468899999999876544443 4555665433 35667776666555444
No 216
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.041 Score=58.46 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=81.9
Q ss_pred CcCCCCCCHHHHHHHHHC-----CCCCCcHHHHHHHHH---------HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC
Q 009477 24 GFESLNLSPNVFRAIKRK-----GYKVPTPIQRKTMPL---------ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV 89 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~---------il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~ 89 (534)
.+..+|+++.+.+.|.+. +....+..=...+.. +..|+.+.+.|+||+|||......+......+
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~- 378 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH- 378 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc-
Confidence 456778888888877542 111112111112211 12355688899999999987654433322221
Q ss_pred CCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 90 PQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 90 ~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++.++. +.|.-+. +.++.++...++.+.. +.+++.+...+.. +.
T Consensus 379 --~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------------------a~d~~~L~~aL~~-----l~ 427 (559)
T PRK12727 379 --APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------------------ADSAESLLDLLER-----LR 427 (559)
T ss_pred --CCCceEEEecccccccHH---HHHHHhhcccCceeEe---------------------cCcHHHHHHHHHH-----hc
Confidence 133455443 2333222 2344444433332221 1233445555543 34
Q ss_pred CeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCC-HHHHHHHHhc
Q 009477 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALAEFAKAG 220 (534)
Q Consensus 168 ~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~-~~~~~~~~~~ 220 (534)
+.++|+||.+=+.... ....++..+.. ......+++++++.. ..+...++.+
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHHH
Confidence 6889999999764321 12223333322 223456788888864 3444444443
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.012 Score=60.24 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=85.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cH-HHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TR-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--tr-eLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (534)
+.+.+.|+||+|||......+.. +.. .|.++.++.. .| .-+.|+ +.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~----~GkkVglI~aDt~RiaAvEQL----k~yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH----cCCcEEEEecCCcchHHHHHH----HHHhhhcCCcE-------------
Confidence 45789999999999876644433 222 3555655553 33 333443 33433323322
Q ss_pred HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCC-HHHHH
Q 009477 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (534)
Q Consensus 138 ~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~-~~~~~ 215 (534)
+++.+|..+.+.+.... .-.++++|++|-+=+.... .....+.+++....+..-.+.+|||.. ..+..
T Consensus 300 --------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 22346666766664311 1125789999988775532 234555666655444444677898754 45566
Q ss_pred HHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHh
Q 009477 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (534)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 262 (534)
.++.+-.- +.-...+-.++...+...++.++...
T Consensus 370 i~~~F~~~-------------~idglI~TKLDET~k~G~iLni~~~~ 403 (436)
T PRK11889 370 IITNFKDI-------------HIDGIVFTKFDETASSGELLKIPAVS 403 (436)
T ss_pred HHHHhcCC-------------CCCEEEEEcccCCCCccHHHHHHHHH
Confidence 66654320 01122233344445566677776654
No 218
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.75 E-value=0.034 Score=56.73 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
++-+.+.||||.|||++..-.+....... +..+-++|-+-|--.+- .+.++.|++..++.+..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~----------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY----------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec-----------
Confidence 56788999999999987654444333111 12233455555433322 2356777766666554443
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCH-HHHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~-~~~~~~ 217 (534)
+|.-|...+.. +.+.++|.+|=+-+-. +.....++.+.+....+.--.+.+|||... .+.+..
T Consensus 268 ----------~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 268 ----------SPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred ----------CHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 44444444432 4556788888776533 223456677777666555567889999743 344454
Q ss_pred Hhc
Q 009477 218 KAG 220 (534)
Q Consensus 218 ~~~ 220 (534)
..+
T Consensus 333 ~~f 335 (407)
T COG1419 333 KQF 335 (407)
T ss_pred HHh
Confidence 444
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.74 E-value=0.0089 Score=55.81 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=68.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+++.||||+|||.+..-.+...... +.++.+++- .|.=+. ++++.|++..++.+.......+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-----~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~-------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-----GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD-------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC--------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-----cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh--------
Confidence 6789999999999765433333222 455655553 332222 2455555554555443222111
Q ss_pred hCCCCEEEECchH-HHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHH
Q 009477 141 AQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (534)
Q Consensus 141 ~~~~~IiV~Tp~~-l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~ 214 (534)
|.. +.+.+.. ...++.++|+||-+-+... .....++.+++....+..-.+.+|||...+..
T Consensus 68 ----------~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 68 ----------PAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----------HHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----------hHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 111 1222322 2234578899998876542 23456777777777666778999999866543
No 220
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.57 E-value=0.0074 Score=58.12 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=63.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCC-CHHHHHHHHhC-CCCEEEECchHHHHHHHhcCCCCCCCe
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSV 169 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~-~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~l~~~ 169 (534)
..+.+|||+.+=-=|..+.+.++.|. ..+..++-++.-. ..+++...+.. ...|.||||+|+..+++. ..+.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccC
Confidence 35778999988555555555555552 1134555555443 67778877774 789999999999999976 78999999
Q ss_pred eEEEEcCCCc
Q 009477 170 EYVVFDEADC 179 (534)
Q Consensus 170 ~~iViDEah~ 179 (534)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998763
No 221
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.47 E-value=0.026 Score=68.26 Aligned_cols=64 Identities=25% Similarity=0.243 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~--d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
.+++.|++|+..++.+. -+++.|..|+|||... -.+++.+.......+.+++.++||---+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 59999999999999864 5889999999999863 2333333221112466799999997766543
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.43 E-value=0.028 Score=50.11 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
+++.|++|+|||......+... .. .+..++++.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~----~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT----KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh----cCCEEEEEECCcchHH
Confidence 5789999999998655333322 21 3566888877654433
No 223
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.39 E-value=0.029 Score=66.99 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHH--HHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFL--VPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l--~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
.+++.|++|+..++.+ +-+++.|..|+|||.+.- +-++..+.+ ..+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 6999999999999975 558999999999998642 222222222 2467799999997766554
No 224
>PRK05642 DNA replication initiation factor; Validated
Probab=96.34 E-value=0.024 Score=54.61 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=30.3
Q ss_pred CeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 168 ~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
+.+++|+|+.|.+... .+...+..++..+..+...++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987543 4556677888776665455666666544
No 225
>PRK08727 hypothetical protein; Validated
Probab=96.33 E-value=0.016 Score=55.84 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCeeEEEEcCCCccccCC-hHHHHHHHHHhcCCC-CcEEEEEeeCCHHH
Q 009477 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSEN-RQTLLFSATLPSAL 213 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~~-~q~ll~SAT~~~~~ 213 (534)
.+.++||+||+|.+.... ....+..++...... .++++.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 356789999999887432 233444455444333 34454444444443
No 226
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.32 E-value=0.01 Score=57.91 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=54.2
Q ss_pred HHHHHHhcCCcEEEEEeCcccccCCCCC--------CCEEEEcCCCCChhhhHHhhccCCCCCCc-ceEEEEecc
Q 009477 307 IHVSRFRARKTMFLIVTDVAARGIDIPL--------LDNVINWDFPPKPKIFVHRVGRAARAGRT-GTAFSFVTS 372 (534)
Q Consensus 307 ~~~~~F~~g~~~iLI~Tdv~a~GlDip~--------v~~VI~~~~p~s~~~~~qr~GR~gR~g~~-G~~i~~~~~ 372 (534)
...+.|.+|+.+|+|.|+.++.|+.+.. -++-|...+||+....+|..||+.|.|+. .-.|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 4467899999999999999999998763 23467889999999999999999999884 444555544
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.30 E-value=0.024 Score=52.25 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=33.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
+++.|++|+|||...+--+.+.+. .|.++++++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 689999999999876644444332 46778888764 55666666666553
No 228
>PRK06921 hypothetical protein; Provisional
Probab=96.29 E-value=0.078 Score=52.06 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
+..+++.|++|+|||.... .+...+... .|..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEEEH-HHHHHH
Confidence 5679999999999997543 333333321 1566766654 344444
No 229
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.25 E-value=0.03 Score=58.02 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCCCCCcHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 41 KGYKVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
..|...+|.|.+-+..+.. +-++++..|+|+|||.+.+-.++..-..... .-.+.++-+-|.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-~~~KliYCSRTv 77 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-EHRKLIYCSRTV 77 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-ccceEEEecCcc
Confidence 3577789999887755543 4579999999999999877666655444332 234455554443
No 230
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.25 E-value=0.011 Score=57.72 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 164 ~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
.+...++.||+||||.|... -...+.+.+...+....+++...-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 45667899999999998754 2455666666666666666665554
No 231
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.065 Score=59.62 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=68.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCC-eEEEEEcC-cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSP-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g-~~~Lil~P-treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
-+.+.||||+|||++........... .| +++.++.- +--.+ ..+.++.+++..++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv--------------- 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRIG--ALEQLRIYGRILGVPV--------------- 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccchH--HHHHHHHHHHhCCCCc---------------
Confidence 36789999999998766444322111 23 34555443 21110 1233455554444322
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCCH-HHHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~~-~~~~~~ 217 (534)
.++.+|..+.+.+.. +.+.++|+||=+=+.... ...+.+..+.....+...++.+|||... .+.+.+
T Consensus 246 ------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 246 ------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred ------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 233466666666654 345678899888765422 2344444444444455567888888643 344454
Q ss_pred Hhc
Q 009477 218 KAG 220 (534)
Q Consensus 218 ~~~ 220 (534)
+.|
T Consensus 315 ~~f 317 (767)
T PRK14723 315 HAY 317 (767)
T ss_pred HHH
Confidence 444
No 232
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.21 E-value=0.033 Score=59.24 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=58.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
..+++.|++|+|||.... .+...+... ..+.+++++.. .++..+....++. .
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~--~~~~~v~yi~~-~~~~~~~~~~~~~---------------~--------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK--NPNAKVVYVTS-EKFTNDFVNALRN---------------N--------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHc---------------C---------
Confidence 458999999999998543 233333332 12556776644 4554443332211 0
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcC-CCCcEEEEEeeCCHHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~-~~~q~ll~SAT~~~~~~ 214 (534)
+...+... +.+++++|+||+|.+.... ....+..++..+. .+.++++.|...|..+.
T Consensus 201 ---------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 11122221 2257799999999876543 2344555554443 34555555555554543
No 233
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.20 E-value=0.013 Score=65.10 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
..+++-|++|+-. ...++++.|..|||||.+...-+...+.... ..+.++|+++.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 3599999999853 3356899999999999986655444443322 23567999999999999988877764
No 234
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.18 E-value=0.039 Score=57.85 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=86.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-c-HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P-t-reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
.+++.|++|+|||.+..-.+. .+.. .|.+++++.. + |.-+ .+.++.++...++.+.......
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~----~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~-------- 160 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKK----KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNK-------- 160 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCcc--------
Confidence 477899999999987654332 3332 3556666653 2 2211 2234444444444322111100
Q ss_pred HhCCCCEEEECchH-HHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHH
Q 009477 140 LAQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~-l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (534)
.|.. +.+.+.. +...++||+|.+-++. +....+++..+.....+..-++.++||...+....+
T Consensus 161 ----------d~~~i~~~al~~-----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 161 ----------DAVEIAKEGLEK-----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred ----------CHHHHHHHHHHH-----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 1111 2233332 1223889999996544 223445566666666666678888998876655555
Q ss_pred HhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChh
Q 009477 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (534)
Q Consensus 218 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~ 277 (534)
+.+.... +.....+-.++...+...++.+.... +.-|.|+.+=.
T Consensus 226 ~~F~~~l------------~i~gvIlTKlD~~a~~G~~ls~~~~~----~~Pi~fig~Ge 269 (437)
T PRK00771 226 KAFHEAV------------GIGGIIITKLDGTAKGGGALSAVAET----GAPIKFIGTGE 269 (437)
T ss_pred HHHHhcC------------CCCEEEEecccCCCcccHHHHHHHHH----CcCEEEEecCC
Confidence 5532110 00112222334445566677766654 34466666533
No 235
>PHA02533 17 large terminase protein; Provisional
Probab=96.16 E-value=0.044 Score=59.12 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC-C-
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-L- 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~-l- 122 (534)
.|.|+|...+..+..++-.++..+-..|||.+....++...... .+..+++++|++.-|..+.+.++.+..... +
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 38899999998876566666767777799998775555444322 356899999999999998887765433211 1
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCC--CC
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NR 200 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~--~~ 200 (534)
+........ ..-.+.++..|.+.|.+. ....=.+..++|+||+|.+-+ +.+.+..+...+.. ..
T Consensus 136 ~~~i~~~~~----~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~ 201 (534)
T PHA02533 136 QPGIVEWNK----GSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSS 201 (534)
T ss_pred hcceeecCc----cEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCc
Confidence 110000000 001113455554444321 011122467899999997654 33333333333322 23
Q ss_pred cEEEEEee
Q 009477 201 QTLLFSAT 208 (534)
Q Consensus 201 q~ll~SAT 208 (534)
+++.+|.+
T Consensus 202 r~iiiSTp 209 (534)
T PHA02533 202 KIIITSTP 209 (534)
T ss_pred eEEEEECC
Confidence 44454544
No 236
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.11 E-value=0.068 Score=52.41 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=85.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-c--HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T--RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P-t--reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (534)
..+.+.|++|+|||..+...+... .. .+.++.++.. + ...+.|+...... .++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l-~~----~~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~------------ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF-HG----KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI------------ 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH-HH----cCCeEEEEecCCCCHHHHHHHHHHhhh----cCceEE------------
Confidence 468899999999999776444332 22 2344554443 2 2455555433332 223221
Q ss_pred HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCC-HHHHH
Q 009477 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (534)
Q Consensus 138 ~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~-~~~~~ 215 (534)
...++..+.+.+.... ...++++||+|-+=+... ......+.+++....+..-.+.+|||.. .....
T Consensus 135 ---------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 1134555555444311 124678999999977542 2234555566655544444677999864 46666
Q ss_pred HHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHh
Q 009477 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (534)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 262 (534)
.++.+-. + ..-...+-.++...+...++.++...
T Consensus 204 ~~~~f~~----~---------~~~~~I~TKlDet~~~G~~l~~~~~~ 237 (270)
T PRK06731 204 IITNFKD----I---------HIDGIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred HHHHhCC----C---------CCCEEEEEeecCCCCccHHHHHHHHH
Confidence 7766532 0 11122333444555667777777654
No 237
>PRK08116 hypothetical protein; Validated
Probab=96.08 E-value=0.069 Score=52.48 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=59.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
..+++.|++|+|||.... .+.+.+... +..++++ +..+|...+...+.. . +.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~----~~~v~~~-~~~~ll~~i~~~~~~---~----------~~--------- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK----GVPVIFV-NFPQLLNRIKSTYKS---S----------GK--------- 166 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc----CCeEEEE-EHHHHHHHHHHHHhc---c----------cc---------
Confidence 349999999999998644 344454432 4556555 444554443322111 0 00
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc--ccCChHHHHHHHHHhc-CCCCcEEEEEeeCCHHHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL--FGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l--~~~~~~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~ 215 (534)
.+...+++. +.+.+++||||.+.. .++ ....+..++... ....++|+.|-..|.++..
T Consensus 167 --------~~~~~~~~~--------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 167 --------EDENEIIRS--------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred --------ccHHHHHHH--------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 011112221 345789999999642 232 244556666643 3446677777666655443
No 238
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.07 E-value=0.017 Score=65.77 Aligned_cols=151 Identities=19% Similarity=0.134 Sum_probs=93.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhc-------------CCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEE
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-------------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~-------------~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~ 126 (534)
|+++++.-..|+|||..-+...+..+-.. ....-...|||+|. ++..||.+.+....... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 45688999999999987765544332110 00112348999998 78899999888876443 67777
Q ss_pred EEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-------------C----CCCe--eEEEEcCCCccccCChHH
Q 009477 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-------------S----LKSV--EYVVFDEADCLFGMGFAE 187 (534)
Q Consensus 127 ~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-------------~----l~~~--~~iViDEah~l~~~~~~~ 187 (534)
+.|=.+.........-.+|||++|+..|...+...... . |-.+ ==|++|||+.+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 77622111000011246899999999987666542111 0 1111 1289999997654 345
Q ss_pred HHHHHHHhcCCCCcEEEEEeeCCHHHHH
Q 009477 188 QLHKILGQLSENRQTLLFSATLPSALAE 215 (534)
Q Consensus 188 ~~~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (534)
...+++..++ ..-....|+||-..+.+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 5566666665 34579999997544444
No 239
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.06 E-value=0.014 Score=65.22 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.+++.|++|+.. ....+++.|..|||||.+...-+...+..... +..++|+|+.|+..|..+.+.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeeeEechHHHHHHHHHHHHHH
Confidence 489999999975 34578899999999999866555555543221 2357999999999999998887764
No 240
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.06 E-value=0.044 Score=57.44 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=56.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
.+++.|++|+|||.... .+...+.+. ..+.+++++.. .++..++...+..
T Consensus 138 ~l~l~G~~G~GKThL~~-ai~~~l~~~--~~~~~v~yi~~-~~~~~~~~~~~~~-------------------------- 187 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH-AIGNEILEN--NPNAKVVYVSS-EKFTNDFVNALRN-------------------------- 187 (405)
T ss_pred eEEEECCCCCcHHHHHH-HHHHHHHHh--CCCCcEEEEEH-HHHHHHHHHHHHc--------------------------
Confidence 48899999999998543 334444332 13566777754 3443332221110
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcC-CCCcEEEEEeeCCHHHH
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~-~~~q~ll~SAT~~~~~~ 214 (534)
+ +...+...+ .+.+++|+||+|.+.... ....+..++..+. .+.++++.|...|..+.
T Consensus 188 -~------~~~~~~~~~--------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 188 -N------KMEEFKEKY--------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred -C------CHHHHHHHH--------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 0 112222222 246799999999876542 2344455554442 34555554444444433
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.03 E-value=0.023 Score=54.19 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=25.3
Q ss_pred eeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCC
Q 009477 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 169 ~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~ 210 (534)
.+++||||+|.+... .....+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999987653 235556666655433223455566543
No 242
>PRK12377 putative replication protein; Provisional
Probab=96.00 E-value=0.053 Score=52.49 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=57.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
..+++.|++|+|||.... .+...+.. .|..++++ +..+|..++...... +.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v~~i-~~~~l~~~l~~~~~~--------------~~--------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSVIVV-TVPDVMSRLHESYDN--------------GQ--------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCeEEE-EHHHHHHHHHHHHhc--------------cc---------
Confidence 579999999999997543 33334433 35555444 445666554332210 00
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcCC-CCcEEEEEeeCCHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~-~~q~ll~SAT~~~~ 212 (534)
+...++ . .+.+++++|+||.+...... -...+..++..... ..++++.|-=-+..
T Consensus 153 ---------~~~~~l---~-----~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 153 ---------SGEKFL---Q-----ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred ---------hHHHHH---H-----HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 001122 1 14578999999996443222 34455666655444 45666665543333
No 243
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.98 E-value=0.044 Score=58.07 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCCCCCHHHHH-HHHHCCCCC-------CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC-CCCeEE
Q 009477 26 ESLNLSPNVFR-AIKRKGYKV-------PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRA 96 (534)
Q Consensus 26 ~~l~l~~~l~~-~l~~~g~~~-------~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~-~~g~~~ 96 (534)
.+.++.++++. .|++.-=.. .-+.|-++|.. -.++-+|+.|..|||||.+++--+...+..+.. -.++.+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~v 263 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPV 263 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCce
Confidence 45567777655 444432222 33445555432 235569999999999999887555555544322 234559
Q ss_pred EEEcCcHHHHHHHHHHHHHhh
Q 009477 97 LILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~ 117 (534)
||+.|.+-+..-+.+++=++|
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999999998888888776
No 244
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.98 E-value=0.046 Score=61.06 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccc
Q 009477 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (534)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a 327 (534)
..|....+..+...+..+.++||.++++..+..+.+.|++. |..+..+||+++..+|.....+..+|+.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34666666666666667889999999999999999988764 78899999999999999999999999999999997543
Q ss_pred ccCCCCCCCEEEEcC
Q 009477 328 RGIDIPLLDNVINWD 342 (534)
Q Consensus 328 ~GlDip~v~~VI~~~ 342 (534)
. +.+.++.+||.-+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 4567788877544
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.026 Score=54.97 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHh-------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 009477 38 IKRKGYKVPTPIQRKTMPLIL-------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (534)
Q Consensus 38 l~~~g~~~~~~~Q~~ai~~il-------~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~ 110 (534)
+....|......++.++..+. ++.++++.|++|+|||..+..-.. .+.. .|.+++ .+++-+|+.++.
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~-~l~~----~g~sv~-f~~~~el~~~Lk 149 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGN-ELLK----AGISVL-FITAPDLLSKLK 149 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEE-EEEHHHHHHHHH
Confidence 333445555556666554332 567999999999999987553333 3333 356554 456668877755
Q ss_pred HHHH
Q 009477 111 KFTK 114 (534)
Q Consensus 111 ~~~~ 114 (534)
....
T Consensus 150 ~~~~ 153 (254)
T COG1484 150 AAFD 153 (254)
T ss_pred HHHh
Confidence 5433
No 246
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.96 E-value=0.041 Score=59.16 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccc
Q 009477 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (534)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a 327 (534)
..|....+..+...+..++++||.+++...+..+.+.|++. +..+..+||+++..+|.....+..+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 34555666667666777889999999999999999888764 77889999999999999999999999999999997654
Q ss_pred ccCCCCCCCEEEEcC
Q 009477 328 RGIDIPLLDNVINWD 342 (534)
Q Consensus 328 ~GlDip~v~~VI~~~ 342 (534)
- ..++++.+||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 3 4566788877444
No 247
>PRK09183 transposase/IS protein; Provisional
Probab=95.96 E-value=0.075 Score=51.96 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=29.2
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
+..+.++++.||+|+|||.......... .. .|.+++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a-~~----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA-VR----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH-HH----cCCeEEEEe-HHHHHHH
Confidence 4567889999999999998655333222 21 356677664 3345443
No 248
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.95 E-value=0.032 Score=62.89 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
..|+|.|++|+.. ....+++.|..|||||.+...-+...+..... ...++|+|+.|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v-~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA-SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999964 34579999999999999865555444432221 235799999999999999998887653
No 249
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.05 Score=55.08 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHhcCC----cEEEEcCCCChHHHHHHHHHHHHhh
Q 009477 45 VPTPIQRKTMPLILSGA----DVVAMARTGSGKTAAFLVPMLQRLN 86 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~----d~i~~a~TGsGKT~~~l~p~l~~l~ 86 (534)
.++|+|...+..+.... -.++.||.|.|||..+...+-..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 35899999998887642 3889999999999876644444433
No 250
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.93 E-value=0.066 Score=55.81 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=70.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+.+.|++|+|||++..-.+. .+.. .|.++++++. .|.-+.+ +++.++...++.+.....+......
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~----~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i---- 170 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR----KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI---- 170 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH----
Confidence 67899999999986653332 2222 3566776654 3443333 4555665556665443332221110
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHh
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (534)
..+.+.. +.-..+++||+|=+-++-. ......+..+.....+..-++.++||........++.
T Consensus 171 -------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~ 234 (429)
T TIGR01425 171 -------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKA 234 (429)
T ss_pred -------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHH
Confidence 0111111 1113467777777765432 1244566666666655566788889877555555555
Q ss_pred c
Q 009477 220 G 220 (534)
Q Consensus 220 ~ 220 (534)
+
T Consensus 235 F 235 (429)
T TIGR01425 235 F 235 (429)
T ss_pred H
Confidence 4
No 251
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.83 E-value=0.039 Score=61.75 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=67.5
Q ss_pred hcCCCCeEEEEEcChhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-ccccCCCCCCC
Q 009477 262 HISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AARGIDIPLLD 336 (534)
Q Consensus 262 ~~~~~~~~IVF~~t~~~~e~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-~a~GlDip~v~ 336 (534)
.+..+.+++|.++|+.-+...++.+.. .|+++..++|+++..+|..+++...+|+.+|+|+|.. +...+.++++.
T Consensus 306 ~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 306 AIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred HHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 345678999999999988877766654 4788999999999999999999999999999999964 45567888999
Q ss_pred EEEEcC
Q 009477 337 NVINWD 342 (534)
Q Consensus 337 ~VI~~~ 342 (534)
+||.-.
T Consensus 386 lvVIDE 391 (681)
T PRK10917 386 LVIIDE 391 (681)
T ss_pred eEEEec
Confidence 988533
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.83 E-value=0.036 Score=53.37 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=25.6
Q ss_pred eeEEEEcCCCccccC-ChHHHHHHHHHhcCC-CCcEEEEEeeCCH
Q 009477 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPS 211 (534)
Q Consensus 169 ~~~iViDEah~l~~~-~~~~~~~~i~~~~~~-~~q~ll~SAT~~~ 211 (534)
++++++||+|.+... .+...+..++..... +...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999997643 345555566655433 2223555555443
No 253
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.81 E-value=0.084 Score=55.94 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=60.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
..+++.|++|+|||... ..+...+... ..+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 35899999999999643 3334444332 23567777666 455555444332200
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHhcCC-CCcEEEEEeeCCHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~-~~q~ll~SAT~~~~~ 213 (534)
+.+...... +.+.+++|+||+|.+... ...+.+..++..+.. +.|+++.|-..|..+
T Consensus 195 -----------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -----------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -----------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111111111 346789999999987643 234555566655443 345555555544443
No 254
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.77 E-value=0.065 Score=59.31 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc-C-CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc
Q 009477 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (534)
Q Consensus 248 ~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-~-~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv 325 (534)
...|....++++.+.+..++++||.++....+..+...|+.. | ..+..+|++++..+|.+......+|+.+|+|+|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 347888899999999989999999999999999999988865 3 57899999999999999999999999999999977
Q ss_pred ccccCCCCCCCEEEEcCC
Q 009477 326 AARGIDIPLLDNVINWDF 343 (534)
Q Consensus 326 ~a~GlDip~v~~VI~~~~ 343 (534)
+.- .-++++..||..+-
T Consensus 250 AvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AVF-APVEDLGLVAIWDD 266 (665)
T ss_pred eEE-eccCCCCEEEEEcC
Confidence 532 35567777775553
No 255
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.75 E-value=0.032 Score=58.27 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=75.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH-HHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre-La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
-.++.|..|||||.+...-++..+... ..+.+++++-|+.. |..-+...++......++....-.....+ .+...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~ 78 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKIL 78 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEec
Confidence 367899999999999888877777664 13577999999887 65566666655443333321111111100 00000
Q ss_pred hCCCCEEEECc-hHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC--CCCcEEEEEeeCCHH
Q 009477 141 AQNPDIIIATP-GRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSA 212 (534)
Q Consensus 141 ~~~~~IiV~Tp-~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~--~~~q~ll~SAT~~~~ 212 (534)
..+..|++..- +.--++ .....+.++.+|||..+... .+..++..+. .....+++|.||+..
T Consensus 79 ~~g~~i~f~g~~d~~~~i------k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNKL------KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred CCCeEEEeecccCChhHh------hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 11334555432 111110 12334789999999997543 2333333332 232358889998653
No 256
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.75 E-value=0.11 Score=51.10 Aligned_cols=130 Identities=19% Similarity=0.256 Sum_probs=67.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
-+++.|++|+|||.+..-.+.. +.. .|.+++++. +.|.-+.+ .++.++...++.+.....+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~-l~~----~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~d------- 138 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANK-LKK----QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGAD------- 138 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHh----cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCC-------
Confidence 4677899999999876644432 222 366777776 23333222 333344333443321111111
Q ss_pred HhCCCCEEEECchH-HHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcC------CCCcEEEEEeeCCH
Q 009477 140 LAQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLS------ENRQTLLFSATLPS 211 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~-l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~------~~~q~ll~SAT~~~ 211 (534)
|.. .++.+.. ....++++||+|=+-++.. .....++..+.+..+ +..-++.++||...
T Consensus 139 -----------p~~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 139 -----------PAAVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred -----------HHHHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 111 1222211 1234578888888876542 223445556555444 45567889998765
Q ss_pred HHHHHHHhc
Q 009477 212 ALAEFAKAG 220 (534)
Q Consensus 212 ~~~~~~~~~ 220 (534)
+....+..+
T Consensus 205 ~~~~~~~~f 213 (272)
T TIGR00064 205 NALEQAKVF 213 (272)
T ss_pred HHHHHHHHH
Confidence 544444443
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.72 E-value=0.062 Score=48.52 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=32.0
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHH
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~ 214 (534)
...+++||||||.|... -...+.++++.-|.+..++|.|..+..-+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 46899999999998764 356667777777777777777766544333
No 258
>PRK06893 DNA replication initiation factor; Validated
Probab=95.70 E-value=0.047 Score=52.37 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=29.7
Q ss_pred CCeeEEEEcCCCccccC-ChHHHHHHHHHhcCC-CCcEEEEEeeCCHH
Q 009477 167 KSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~-~~q~ll~SAT~~~~ 212 (534)
.+.+++|+||.|.+... .+...+..++..... +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45789999999987633 344455666655544 34566777776443
No 259
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.58 E-value=0.037 Score=52.89 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCc-EEEEEeeCCH
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ-TLLFSATLPS 211 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q-~ll~SAT~~~ 211 (534)
..+++|+||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999987543 34455556655444444 5777777544
No 260
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.57 E-value=0.031 Score=62.52 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
++|-|++++.. ...++++.|..|||||.+.+--+...+..... ...++|+|+.|+..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78999999864 35689999999999999876666655543221 23579999999999999998776643
No 261
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.57 E-value=0.11 Score=52.42 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
+.++++.|+||+|||.... .+...+.. .|..|+++ +..+|..++... .+.. ..+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~----~g~~V~y~-t~~~l~~~l~~~--~~~~-------------~~~~~--- 238 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD----RGKSVIYR-TADELIEILREI--RFNN-------------DKELE--- 238 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH----CCCeEEEE-EHHHHHHHHHHH--Hhcc-------------chhHH---
Confidence 5789999999999998544 33333332 35666665 445565543321 1100 00000
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh-HHHHHHHHHhcCC-CCcEEEEEeeCCHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~-~~~~~~i~~~~~~-~~q~ll~SAT~~~~~~ 214 (534)
. .++. +.+++++|||+.+......+ ...+..++..... ..++++.|--.|.++.
T Consensus 239 ------------~-~~~~--------l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 239 ------------E-VYDL--------LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred ------------H-HHHH--------hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0 0111 34678999999987654333 3456666655433 4556655555555543
No 262
>CHL00181 cbbX CbbX; Provisional
Probab=95.56 E-value=0.2 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChHHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVP 80 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p 80 (534)
+.++++.|++|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 345899999999999876543
No 263
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.52 E-value=0.1 Score=55.12 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=29.1
Q ss_pred CeeEEEEcCCCccccCC-hHHHHHHHHHhcCC-CCcEEEEEeeCCHHHHHH
Q 009477 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALAEF 216 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~-~~q~ll~SAT~~~~~~~~ 216 (534)
+.+++++||+|.+.+.. ....+..++..+.. +.++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46789999999886542 33445555544433 345555554555555444
No 264
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.52 E-value=0.043 Score=54.01 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=67.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 009477 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (534)
Q Consensus 33 ~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (534)
++.++|...|..+..+.-.+.+--+..|.-+++.|++|+|||...+..+.+.+.. .|.++++++-.- -..++...
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~E~-~~~~~~~r 77 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISLEE-PVVRTARR 77 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEccc-CHHHHHHH
Confidence 3455555444443333222233234456779999999999998655443333222 267788887542 23333433
Q ss_pred HHHhhccCCCeEEEEEcCCCHH---HHHHHHhCCCCEEEE------CchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 113 TKELGRYTDLRISLLVGGDSME---SQFEELAQNPDIIIA------TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~---~~~~~~~~~~~IiV~------Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
+........+....-....... .....+.....+.+- |.+.+...+... ..-..+++||||..+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 78 LLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM--AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH--HhcCCceEEEECCHHHHhc
Confidence 3222111111110000011111 111222222233322 334455444421 1123688999999987764
No 265
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.52 E-value=0.077 Score=53.48 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
..++|||||+|.+........+..++...+.+.++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999999844334566666777766666655544
No 266
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.51 E-value=0.023 Score=51.81 Aligned_cols=124 Identities=18% Similarity=0.253 Sum_probs=53.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCC
Q 009477 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143 (534)
Q Consensus 64 i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~ 143 (534)
|+.|+-|-|||.+..+.+...+... ..+++|.+|+.+=+..+.+.+..-.+..+++..... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~----~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG----KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-----------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc----CceEEEecCCHHHHHHHHHHHHhhcccccccccccc---cccccccccccc
Confidence 5789999999998764443332221 247999999999888777755443332222220000 000000111235
Q ss_pred CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCC
Q 009477 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 144 ~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~ 210 (534)
..|-+..|+.+... -...+++|||||=.+- ...+..++ .....++||.|..
T Consensus 74 ~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll----~~~~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLL----RRFPRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHH----CCSSEEEEEEEBS
T ss_pred ceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHH----hhCCEEEEEeecc
Confidence 66777777766522 1235889999996532 33444443 3444688888873
No 267
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.49 E-value=0.031 Score=55.64 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=54.3
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 25 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~-d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
|.=..+++..+....-..|..+++.|...+..+...+ +++++|.||||||+.. +.+..... ...|++.+--|.
T Consensus 137 lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-----Nal~~~i~-~~eRvItiEDta 210 (355)
T COG4962 137 LSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-----NALSGFID-SDERVITIEDTA 210 (355)
T ss_pred ccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-----HHHHhcCC-CcccEEEEeehh
Confidence 3333445554444444467789999999998887765 9999999999999842 23333322 234899999999
Q ss_pred HHHHH
Q 009477 104 DLALQ 108 (534)
Q Consensus 104 eLa~Q 108 (534)
||-.+
T Consensus 211 ELql~ 215 (355)
T COG4962 211 ELQLA 215 (355)
T ss_pred hhccC
Confidence 98554
No 268
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.12 Score=51.99 Aligned_cols=144 Identities=21% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCCCcHHHHHHHHHHhc----CC---cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 43 YKVPTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~----~~---d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
+..++|+|..++..+.. |+ -.++.|+.|+||+..+...+-..+.......+ -|+...+ + .
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~-----~c~~c~~-------~-~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA-----AQRTRQL-------I-A 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC-----cchHHHH-------H-h
Confidence 45689999999977653 33 38899999999998766444444443211111 1121111 1 1
Q ss_pred hhccCCCeEEEEEcC-CCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHH
Q 009477 116 LGRYTDLRISLLVGG-DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg-~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~ 194 (534)
-+...++.+.....+ .... ....|.|-.--.+.+.+.. .-.....+++|||+||.|.... ...+.++++
T Consensus 69 ~g~HPD~~~i~~~p~~~~~k-------~~~~I~idqIR~l~~~~~~--~p~~g~~kV~iI~~ae~m~~~A-aNaLLKtLE 138 (319)
T PRK08769 69 AGTHPDLQLVSFIPNRTGDK-------LRTEIVIEQVREISQKLAL--TPQYGIAQVVIVDPADAINRAA-CNALLKTLE 138 (319)
T ss_pred cCCCCCEEEEecCCCccccc-------ccccccHHHHHHHHHHHhh--CcccCCcEEEEeccHhhhCHHH-HHHHHHHhh
Confidence 123344443311110 0000 0011222111112222221 1123467899999999987643 455666777
Q ss_pred hcCCCCcEEEEEeeC
Q 009477 195 QLSENRQTLLFSATL 209 (534)
Q Consensus 195 ~~~~~~q~ll~SAT~ 209 (534)
.=|++..+++.|..+
T Consensus 139 EPp~~~~fiL~~~~~ 153 (319)
T PRK08769 139 EPSPGRYLWLISAQP 153 (319)
T ss_pred CCCCCCeEEEEECCh
Confidence 766666677766553
No 269
>PLN03025 replication factor C subunit; Provisional
Probab=95.47 E-value=0.18 Score=51.02 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.9
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
..+++|+||+|.+.... ...+..++...+....++ ++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 57899999999987543 444555565555445444 4444
No 270
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.43 E-value=0.065 Score=51.01 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=60.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
.+++.|++|+|||-. +-.+...+.+.. ++.+++++... +......+.++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH--PGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC--TTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc--ccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 489999999999973 434444444321 35667777653 444443333222
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHhcC-CCCcEEEEEeeCCHHH
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSATLPSAL 213 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~-~~~q~ll~SAT~~~~~ 213 (534)
.....+.+. +...++++||..|.+.+. .....+..++..+. .+.++++.|...|..+
T Consensus 86 -------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111122222 346889999999998754 23455666665553 3456666666766553
No 271
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.047 Score=60.40 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=78.8
Q ss_pred EechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe
Q 009477 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (534)
Q Consensus 245 ~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T 323 (534)
-+....|.+..++++.+.+..++++||.++-......+...|+.+ |.++..+|+++++.+|.....+.++|+.+|+|+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 344567889999999999999999999999888877777777654 7899999999999999999999999999999999
Q ss_pred CcccccCCCCCCCEEE
Q 009477 324 DVAARGIDIPLLDNVI 339 (534)
Q Consensus 324 dv~a~GlDip~v~~VI 339 (534)
..+- =.-++++..+|
T Consensus 304 RSAl-F~Pf~~LGLII 318 (730)
T COG1198 304 RSAL-FLPFKNLGLII 318 (730)
T ss_pred chhh-cCchhhccEEE
Confidence 7653 23455677766
No 272
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.34 E-value=0.11 Score=54.18 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
+-......+..+..++++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344555566777789999999999999998664
No 273
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.30 E-value=0.29 Score=47.89 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHh----cCC-cEEEEcCCCChHHHHHH
Q 009477 45 VPTPIQRKTMPLIL----SGA-DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~-d~i~~a~TGsGKT~~~l 78 (534)
-+++.+++++..+. .+. .+++.|++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 46777777776553 233 48899999999998654
No 274
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.28 E-value=0.04 Score=59.91 Aligned_cols=124 Identities=21% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhhccCC
Q 009477 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTD 121 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~ 121 (534)
..+|+|++.+..+-.. +.++++.++-+|||.+.+..+...+... ...+|++.||.++|..+.+ .+..+.+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD----PGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC----CCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 5789999999877553 5799999999999996654333333322 2349999999999999885 4544433221
Q ss_pred -CeEEEEEc----CCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 122 -LRISLLVG----GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 122 -l~~~~~~g----g~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
++ ..+.. ..........+. +..+.++.-++- ..+.-..+.++++||.|..-
T Consensus 92 ~l~-~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 92 VLR-RKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHH-HHhCchhhcccCCchhheecC-CCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 11 11111 011111111122 333433322211 12334568899999999874
No 275
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.24 Score=51.35 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=66.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+++.|++|+|||......+...... .|.++.++. +.|..+.+ .++.++...++.+...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~------------- 285 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPV------------- 285 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeeeh-------------
Confidence 7789999999999776444433222 345555554 23343333 4555554444432110
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcC---CCCcEEEEEeeCCH-HHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLS---ENRQTLLFSATLPS-ALAE 215 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~---~~~q~ll~SAT~~~-~~~~ 215 (534)
..+..+...+. -.+.++|+||=+-+.. +..-...+..++.... +...++.+|||... .+..
T Consensus 286 --------~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 286 --------KDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred --------HHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 01122232222 2467889999766542 2234455555555442 22456888999866 5555
Q ss_pred HHHhc
Q 009477 216 FAKAG 220 (534)
Q Consensus 216 ~~~~~ 220 (534)
.++.+
T Consensus 352 ~~~~f 356 (432)
T PRK12724 352 VLKAY 356 (432)
T ss_pred HHHHh
Confidence 55554
No 276
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.24 E-value=0.39 Score=43.01 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=78.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE---EcC---cHHHHHHHHHHHHHhhccCCCeEEEEEcC-----C
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI---LSP---TRDLALQTLKFTKELGRYTDLRISLLVGG-----D 131 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li---l~P---treLa~Q~~~~~~~~~~~~~l~~~~~~gg-----~ 131 (534)
+.+...+|.|||.+++--++..+. .|.++++ +=. +-|+ ..++.+. ++.+...-.+ .
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~-----~g~~v~~vQFlKg~~~~gE~-----~~l~~l~---~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG-----HGYRVGVVQFLKGGWKYGEL-----KALERLP---NIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEEeCCCCccCHH-----HHHHhCC---CcEEEECCCCCccCCC
Confidence 567788899999988766665544 3677877 332 2222 2333432 3333221111 1
Q ss_pred CHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 132 ~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
...+..... ...+....+ .+....++++|+||.-...+.++ .+.+.++++..|+..-+|+.+-.+
T Consensus 72 ~~~~~~~~a-----------~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 72 NDEEDIAAA-----------AEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred ChHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111111000 112222221 13345789999999988776664 577888899999888899999999
Q ss_pred CHHHHHHHHh
Q 009477 210 PSALAEFAKA 219 (534)
Q Consensus 210 ~~~~~~~~~~ 219 (534)
|+++.+.+..
T Consensus 139 p~~l~e~AD~ 148 (159)
T cd00561 139 PKELIEAADL 148 (159)
T ss_pred CHHHHHhCce
Confidence 9988877653
No 277
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.24 E-value=0.1 Score=64.77 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHH---HHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFL---VPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~--d~i~~a~TGsGKT~~~l---~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
.+++.|++|+..++.+. -+++.|..|+|||.... -++.+.+. ..|.+++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH----hcCCeEEEEeChHHHHHHH
Confidence 59999999999998764 47889999999998652 23333332 2467899999997666554
No 278
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.23 E-value=0.066 Score=59.41 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=66.9
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc-cccCCCCCCCE
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA-ARGIDIPLLDN 337 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~-a~GlDip~v~~ 337 (534)
+..+.+++|.+||+.-++.+++.+.+ .|+++..++|+++..+|...++...+|+.+|+|+|... ...+++.++.+
T Consensus 281 ~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 281 IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLAL 360 (630)
T ss_pred HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccce
Confidence 45678999999999998888776654 47899999999999999999999999999999999654 45678888898
Q ss_pred EEEcC
Q 009477 338 VINWD 342 (534)
Q Consensus 338 VI~~~ 342 (534)
||.-.
T Consensus 361 vVIDE 365 (630)
T TIGR00643 361 VIIDE 365 (630)
T ss_pred EEEec
Confidence 88533
No 279
>PRK10867 signal recognition particle protein; Provisional
Probab=95.22 E-value=0.16 Score=53.19 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=65.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+++.|++|+|||++..-.+.. +... .|.+++++.- .|.-+. +.++.++...++.+.....+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~-l~~~---~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~--------- 166 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKY-LKKK---KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQ--------- 166 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHHh---cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCC---------
Confidence 678999999999876544332 2221 2556666553 343332 233344444455543221111
Q ss_pred hCCCCEEEECchHHHH-HHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHH
Q 009477 141 AQNPDIIIATPGRLMH-HLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~-~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (534)
.|..+.. .+.. .....+++||+|=+=++. +......+..+.....+..-++.++|+...+....++
T Consensus 167 ---------dp~~i~~~a~~~---a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~ 234 (433)
T PRK10867 167 ---------DPVDIAKAALEE---AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAK 234 (433)
T ss_pred ---------CHHHHHHHHHHH---HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHH
Confidence 2222221 1111 123356777887776543 2223344555555554444467777876666655555
Q ss_pred hc
Q 009477 219 AG 220 (534)
Q Consensus 219 ~~ 220 (534)
.+
T Consensus 235 ~F 236 (433)
T PRK10867 235 AF 236 (433)
T ss_pred HH
Confidence 54
No 280
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.17 E-value=0.078 Score=56.01 Aligned_cols=108 Identities=18% Similarity=0.321 Sum_probs=59.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+.+++.|++|+|||-... .+...+.. .+.+++++.. ..+..+....++. +
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~----~~~~v~yi~~-~~f~~~~~~~l~~--------------~---------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE----SGGKILYVRS-ELFTEHLVSAIRS--------------G---------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH----cCCCEEEeeH-HHHHHHHHHHHhc--------------c----------
Confidence 458999999999997533 33334433 2566777754 3444433222210 0
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhc-CCCCcEEEEEeeCCHHHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~ 215 (534)
..+.+.. .+.+.+++++||+|.+.... ....+..++..+ ..+.++++.|-+.|..+..
T Consensus 192 ---------~~~~f~~--------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 192 ---------EMQRFRQ--------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ---------hHHHHHH--------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 0011111 13467899999999986532 344455555433 2356666666566665543
No 281
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.16 E-value=0.22 Score=48.78 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998654
No 282
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.15 E-value=0.089 Score=60.47 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-c
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-V 325 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-v 325 (534)
|....+..+...+..+.+++|.+||+.-++..++.+... ++.+..++|..+..++..+++.+.+|+.+|+|+|. .
T Consensus 485 KT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l 564 (926)
T TIGR00580 485 KTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL 564 (926)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH
Confidence 443333333333445789999999999999888877653 56778899999999999999999999999999995 4
Q ss_pred ccccCCCCCCCEEEE
Q 009477 326 AARGIDIPLLDNVIN 340 (534)
Q Consensus 326 ~a~GlDip~v~~VI~ 340 (534)
+.+.+.+.++.++|.
T Consensus 565 l~~~v~f~~L~llVI 579 (926)
T TIGR00580 565 LQKDVKFKDLGLLII 579 (926)
T ss_pred hhCCCCcccCCEEEe
Confidence 556788889998874
No 283
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.14 E-value=0.27 Score=42.00 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+++.||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999998544
No 284
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.07 Score=54.11 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.+.|+.||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 369999999999998654
No 285
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.13 E-value=0.15 Score=55.48 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=59.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
.++++|++|+|||-... .+...+... ..+.+++++.. .+++.+....+..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~--~~g~~V~Yita-eef~~el~~al~~-------------------------- 365 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRL--YPGTRVRYVSS-EEFTNEFINSIRD-------------------------- 365 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEeeH-HHHHHHHHHHHHh--------------------------
Confidence 48999999999997433 233333321 13566766654 4555443322211
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC-hHHHHHHHHHhcCC-CCcEEEEEeeCCHHHH
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~-~~~~~~~i~~~~~~-~~q~ll~SAT~~~~~~ 214 (534)
.....+... +.+++++||||.|.+.... ....+..++..+.. +.++|+.|-..|.++.
T Consensus 366 -------~~~~~f~~~--------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 366 -------GKGDSFRRR--------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred -------ccHHHHHHH--------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 000111111 3457899999999886543 34555566665544 4666766655555543
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.12 E-value=0.14 Score=49.18 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=33.4
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
..|.-+++.|++|+|||...+-.+...+. .|.++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 34667999999999999875433333222 35678888854 33344444444443
No 287
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.11 E-value=0.07 Score=57.13 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 48 PIQRKTMPLILS-----G----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 48 ~~Q~~ai~~il~-----~----~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
|+|.-.+-.++. | +.+++.-+-|-|||......++..+.-. ...|..+++.+++++-|..+++.++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 678888777762 2 3478888899999986655555444322 23477899999999999999998888764
Q ss_pred cCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHh-cCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
....... ... ..... .....|..-..+.++..+.. .....=.+..++|+||+|..-+......+..-....
T Consensus 80 ~~~~l~~-~~~-----~~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r- 151 (477)
T PF03354_consen 80 ASPELRK-RKK-----PKIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR- 151 (477)
T ss_pred hChhhcc-chh-----hhhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-
Confidence 4211100 000 00000 01122332222222222211 111222357899999999987644444444333332
Q ss_pred CCCcEEEE
Q 009477 198 ENRQTLLF 205 (534)
Q Consensus 198 ~~~q~ll~ 205 (534)
++.+++..
T Consensus 152 ~~pl~~~I 159 (477)
T PF03354_consen 152 PNPLIIII 159 (477)
T ss_pred CCceEEEE
Confidence 34444444
No 288
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.11 E-value=0.093 Score=56.73 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=77.4
Q ss_pred EechhhHHHHHHHHHHHhcCCCCeEEEEEcCh----hhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 009477 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTK----HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (534)
Q Consensus 245 ~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~----~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iL 320 (534)
+|.+....-+++..+.. +..+.|+.+.+||. .|.+.+.+.|...|+.+..+.|.+...+|+.+++...+|+++|+
T Consensus 291 DVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~iv 369 (677)
T COG1200 291 DVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIV 369 (677)
T ss_pred CcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEE
Confidence 34444455555565553 46789999999995 55566667777789999999999999999999999999999999
Q ss_pred EEeCc-ccccCCCCCCCEEEEc
Q 009477 321 IVTDV-AARGIDIPLLDNVINW 341 (534)
Q Consensus 321 I~Tdv-~a~GlDip~v~~VI~~ 341 (534)
|+|-. +...+++.++.+||.-
T Consensus 370 VGTHALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVIID 391 (677)
T ss_pred EEcchhhhcceeecceeEEEEe
Confidence 99965 4688999999998863
No 289
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.10 E-value=0.1 Score=59.08 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
..|+|.|++|+.. ....+++.|..|||||.+..--+...+..... ...++|+++-|+.-|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i-~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV-APWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC-CHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3589999999975 34579999999999999876555555443222 23469999999999999998887764
No 290
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.09 E-value=0.1 Score=62.41 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=79.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh-ccCCCe
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG-RYTDLR 123 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~-~~~~l~ 123 (534)
+.|+.|+++|. ..++++++.|..|||||.+..--++..+.... .-.++|+++=|+..|..+.+.+..-. +...-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV--DIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 36899999997 36889999999999999988766666665431 12469999999999999888766532 11110
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCC-CeeEEEEcCCCc
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLK-SVEYVVFDEADC 179 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~-~~~~iViDEah~ 179 (534)
........+.+..-...-|+|-..+...+.+.....+. +..+=|.||...
T Consensus 76 ------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00112222333344567889988886655542221111 224556787764
No 291
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.13 Score=53.69 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
|.-+.+.|+||+|||......+-....... ...-.++.+.+.-.+ ..+.+..+++..++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v------------ 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG--ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI------------ 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC------------
Confidence 344889999999999976544333222221 112245555553221 1233455555445544322
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCC-HHHHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFA 217 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~-~~~~~~~ 217 (534)
.++..+...+. .+.+.+++++|.+=+.-. .....++..+.....+...++.+|||.. ..+.+..
T Consensus 255 ---------~~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 255 ---------KDIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---------CCHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 22222322222 245667888888633221 1123334443222233345688999964 4455555
Q ss_pred HhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHh
Q 009477 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (534)
Q Consensus 218 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 262 (534)
..+-.-+ .-...+-.++...+...++.++...
T Consensus 321 ~~f~~~~-------------~~~~I~TKlDEt~~~G~~l~~~~~~ 352 (420)
T PRK14721 321 SAYQGHG-------------IHGCIITKVDEAASLGIALDAVIRR 352 (420)
T ss_pred HHhcCCC-------------CCEEEEEeeeCCCCccHHHHHHHHh
Confidence 5542111 1122333444455666677776654
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.95 E-value=0.31 Score=44.28 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=28.7
Q ss_pred CCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhc
Q 009477 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (534)
Q Consensus 167 ~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~ 220 (534)
...+++|+|...... +......+..+........-++.++|+-+.+....+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356788888887643 222334444444333344455666666555544444443
No 293
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.90 E-value=0.29 Score=49.70 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
...++||+||+|.+.+. ....+..++...+....+++.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987642 3445666666666556555433
No 294
>PF05729 NACHT: NACHT domain
Probab=94.89 E-value=0.23 Score=44.32 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=25.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCC-eEEEEEcCcHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLAL 107 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g-~~~Lil~PtreLa~ 107 (534)
-+++.|++|+|||.... -+...+........ ..+.+..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 37899999999998654 33434443322221 23555555555544
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.88 E-value=0.13 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=16.1
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPM 81 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~ 81 (534)
+.+++.||||+|||......+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357789999999998765333
No 296
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.84 E-value=0.26 Score=54.67 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
...+++||||+|.|....+. .+.++++.-+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 46789999999998765433 3444566555544444433
No 297
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=0.13 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=16.4
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPM 81 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~ 81 (534)
+-+.+.||||+|||++.....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 347789999999999766444
No 298
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.74 E-value=0.22 Score=55.13 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=87.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 009477 36 RAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 36 ~~l~~~g~~~~~~~Q~~ai~~il~~~--d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
..+.....+.+..-|.+.+..++..+ -+++.|.-|=|||.+..+.+. .+..... ..+++|.+|+.+=+..+++++
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~--~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG--SVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC--CceEEEeCCCHHHHHHHHHHH
Confidence 33555555556666666666666653 488999999999999887763 3332211 357999999999998888876
Q ss_pred HHhhccCCCeEEEEEcC--CCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHH
Q 009477 114 KELGRYTDLRISLLVGG--DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (534)
Q Consensus 114 ~~~~~~~~l~~~~~~gg--~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~ 191 (534)
.+-....|++....... ..... -.....|-+-+|..-. ..-+++|+|||=-+- ...+..
T Consensus 282 ~~~l~~lg~~~~v~~d~~g~~~~~----~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 282 GKGLEFLGYKRKVAPDALGEIREV----SGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHhHHHhCCccccccccccceeee----cCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC----hHHHHH
Confidence 66444444432222111 10000 0112235555554332 115789999996532 233444
Q ss_pred HHHhcCCCCcEEEEEeeC
Q 009477 192 ILGQLSENRQTLLFSATL 209 (534)
Q Consensus 192 i~~~~~~~~q~ll~SAT~ 209 (534)
++. ..+.++||.|+
T Consensus 343 l~~----~~~rv~~sTTI 356 (758)
T COG1444 343 LLR----RFPRVLFSTTI 356 (758)
T ss_pred HHh----hcCceEEEeee
Confidence 443 33568888887
No 299
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.16 Score=51.27 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=36.8
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHC------CC--CCC------cHHHHHHH------HHHhcC-----CcEEEEcCCCChH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRK------GY--KVP------TPIQRKTM------PLILSG-----ADVVAMARTGSGK 73 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~------g~--~~~------~~~Q~~ai------~~il~~-----~d~i~~a~TGsGK 73 (534)
+.....|+.+|....+..+++.- ++ ... -..=.+|+ |...+| +.++..||+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 34567899999998888887642 11 111 11112221 333344 5699999999999
Q ss_pred HHHH
Q 009477 74 TAAF 77 (534)
Q Consensus 74 T~~~ 77 (534)
|+.+
T Consensus 259 TlLA 262 (491)
T KOG0738|consen 259 TLLA 262 (491)
T ss_pred HHHH
Confidence 9843
No 300
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.73 E-value=0.13 Score=54.02 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.||+|+|||....
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998654
No 301
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.68 E-value=0.5 Score=49.52 Aligned_cols=130 Identities=23% Similarity=0.231 Sum_probs=66.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+++.|++|+|||++..-.+.. +... .|.+++++.- .|.-+.+ .++.++...++.+.....+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~-l~~~---~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~-------- 166 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY-LKKK---QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQS-------- 166 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHHh---CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCC--------
Confidence 778999999999976644433 2211 2555666553 2333322 344444444554433222111
Q ss_pred hCCCCEEEECchHHH-HHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHH
Q 009477 141 AQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~-~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (534)
|..+. +.+.. .....+++||+|=+-++.. ......+..+.....+.--++.++||...+....++
T Consensus 167 ----------P~~i~~~al~~---~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~ 233 (428)
T TIGR00959 167 ----------PVEIARRALEY---AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAK 233 (428)
T ss_pred ----------HHHHHHHHHHH---HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHH
Confidence 11111 11111 1123467788887766442 223445555555554444567778876666666655
Q ss_pred hc
Q 009477 219 AG 220 (534)
Q Consensus 219 ~~ 220 (534)
.+
T Consensus 234 ~f 235 (428)
T TIGR00959 234 TF 235 (428)
T ss_pred HH
Confidence 54
No 302
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.13 Score=52.57 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHH-HHHHHHHHHHHhhccCCCeEEEEEcCCCHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--tre-La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~ 136 (534)
++-+++.||+|+|||......+.. +.. .|.++.++.- .|. -+.| ++.+++..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~----~g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~----------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK----QNRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI----------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-----------
Confidence 345789999999999876644433 222 2455655543 222 1233 3444433333222
Q ss_pred HHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCH-HHH
Q 009477 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPS-ALA 214 (534)
Q Consensus 137 ~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~-~~~ 214 (534)
+..+|..+.+.+.... ...+.++|++|=+=+.-. ......+..+.....+.--.+.+|||... ++.
T Consensus 266 ----------~~~dp~dL~~al~~l~--~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~ 333 (407)
T PRK12726 266 ----------VATSPAELEEAVQYMT--YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVM 333 (407)
T ss_pred ----------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHH
Confidence 2234555555544311 124567888887765432 12334444555444333335566776543 444
Q ss_pred HHHHh
Q 009477 215 EFAKA 219 (534)
Q Consensus 215 ~~~~~ 219 (534)
.+++.
T Consensus 334 ~i~~~ 338 (407)
T PRK12726 334 TILPK 338 (407)
T ss_pred HHHHh
Confidence 44443
No 303
>PF13173 AAA_14: AAA domain
Probab=94.66 E-value=0.27 Score=42.29 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=24.6
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
.-.+|++||+|.+-+ +...+..+.+.. .+.++++.+
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEc
Confidence 456899999999854 667777777754 345544433
No 304
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.64 E-value=0.25 Score=56.14 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
..++++||||+|+|.... ...+.++++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 578999999999988644 445666777766666555544
No 305
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.48 E-value=0.18 Score=50.54 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
++.+++.|++|+|||.... .+...+.. .|..+.++.- -+|+..+...+ .
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~----~g~~v~~~~~-~~l~~~lk~~~---~---------------------- 204 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK----KGVSSTLLHF-PEFIRELKNSI---S---------------------- 204 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCEEEEEH-HHHHHHHHHHH---h----------------------
Confidence 4579999999999998654 33333332 3555555532 24444432221 1
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChH--HHHHHHHHh-cCCCCcEEEEEeeCCHHHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA--EQLHKILGQ-LSENRQTLLFSATLPSALAEF 216 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~--~~~~~i~~~-~~~~~q~ll~SAT~~~~~~~~ 216 (534)
. .+...+++. +.+++++||||...-....+. ..+..|+.. +.....+++.|--.+..+...
T Consensus 205 --~------~~~~~~l~~--------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~ 268 (306)
T PRK08939 205 --D------GSVKEKIDA--------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHH 268 (306)
T ss_pred --c------CcHHHHHHH--------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 0 011112221 456889999999754322233 234556543 345666777666655555543
No 306
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.48 E-value=0.12 Score=52.02 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=45.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 35 ~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
+..+.+.|+ +++.|.+.+.. +..++++++.|+||||||.. +-.++..+... ....+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~--~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ--DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc--CCCceEEEEcCCCccc
Confidence 445555675 46778888865 45578899999999999964 44444433211 2346788888888873
No 307
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.22 Score=54.39 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
...+++||||+|+|....+ ..+.+++..-+....+++ .+|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EEC
Confidence 4678999999998876543 445556666555554444 445
No 308
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.3 Score=50.29 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~ 205 (534)
...+++||||+|.+....+ ..+.+.+...|....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4678999999999875433 2344445554444444443
No 309
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.39 E-value=0.29 Score=49.68 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHhc--C---CcEEEEcCCCChHHHHHHHHHHHHhh
Q 009477 46 PTPIQRKTMPLILS--G---ADVVAMARTGSGKTAAFLVPMLQRLN 86 (534)
Q Consensus 46 ~~~~Q~~ai~~il~--~---~d~i~~a~TGsGKT~~~l~p~l~~l~ 86 (534)
++|+|+..+..+.. + +-.++.|+.|.||+..+...+-..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46888888877654 3 24789999999999877654444444
No 310
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.38 E-value=0.32 Score=53.62 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+++||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876533 334555566555566555544
No 311
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.26 Score=53.74 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEe
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SA 207 (534)
...++++||||+|+|....+. .+.++++.-+....+||.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 346789999999998765543 34445555555565555543
No 312
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.37 Score=53.05 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~ 205 (534)
...+++||||+|+|....+ ..+.+++..-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4678999999999886543 3344455554444444443
No 313
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.9 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhc
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~ 88 (534)
.++++.|+||+|||.+.- -+.+.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 469999999999998744 344444443
No 314
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.43 Score=50.83 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
....+++||||+|.+....+ ..+.+.+..-|+...++ |.+|-
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fI-latte 155 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFI-LATTE 155 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEE-EEeCC
Confidence 35789999999999876433 33444555544444334 44453
No 315
>PRK04195 replication factor C large subunit; Provisional
Probab=94.30 E-value=0.37 Score=51.67 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
.+.+++.||+|+|||...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999998654
No 316
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.27 E-value=0.64 Score=46.84 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=63.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc-Cc-HHHH-HHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-PT-RDLA-LQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~-Pt-reLa-~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (534)
-+.+.||+|+|||......+.. +.. .|.+++++. .+ |.-+ .|... ++...++.+.....+...
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~-l~~----~g~~V~Li~~D~~r~~a~eql~~----~a~~~~i~~~~~~~~~dp----- 181 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHK-YKA----QGKKVLLAAGDTFRAAAIEQLQV----WGERVGVPVIAQKEGADP----- 181 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHh----cCCeEEEEecCccchhhHHHHHH----HHHHcCceEEEeCCCCCH-----
Confidence 3678999999999865533222 221 355677665 33 3333 23222 222233433222111110
Q ss_pred HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-CChHHHHHHHHHhc------CCCCcEEEEEeeCCH
Q 009477 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQL------SENRQTLLFSATLPS 211 (534)
Q Consensus 139 ~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-~~~~~~~~~i~~~~------~~~~q~ll~SAT~~~ 211 (534)
....++.+.. ....++++||+|=+-++.. ....+.+..+.+.. .+..-++.++||...
T Consensus 182 ------------a~~v~~~l~~---~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 182 ------------ASVAFDAIQA---AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred ------------HHHHHHHHHH---HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 0111222221 1235678999998877652 22334555554432 223357889999765
Q ss_pred HHHHHHHhc
Q 009477 212 ALAEFAKAG 220 (534)
Q Consensus 212 ~~~~~~~~~ 220 (534)
+...-+..+
T Consensus 247 ~~~~~a~~f 255 (318)
T PRK10416 247 NALSQAKAF 255 (318)
T ss_pred HHHHHHHHH
Confidence 433334443
No 317
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.25 E-value=0.62 Score=46.24 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.++++.|++|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998653
No 318
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.3 Score=52.61 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=26.6
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
..++++||||+|.|....+ ..+.+.+..-|+...+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999886544 34555666666666555543
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.24 E-value=0.14 Score=56.59 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=40.4
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
..+.-++|+|.-|.+.+......+..+++..|++...++.|-+-|+
T Consensus 127 ~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 127 YEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3445699999999999999999999999999999999999988654
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.22 E-value=0.2 Score=51.60 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 53 ai~~il~-----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
-+..++. |.-+++.|++|+|||...+..+.+. .. .+.+++++.-. +-..|+.....+++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~-a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL-AK----RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH-Hh----cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3455554 3458899999999998655333222 22 34578888765 33456665555554
No 321
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.17 E-value=0.18 Score=50.77 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=43.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 37 AIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 37 ~l~~~g~~~~~~~Q~~ai~~il-~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
.+...|. +++.|.+.+..+. .+.+++++|+||||||... -.++..+... ..+.+++++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC--CCCceEEEecCCcccc
Confidence 3445564 5678887776544 4678999999999999853 3444444321 1345788888888873
No 322
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.38 Score=50.84 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPML 82 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l 82 (534)
.+++||.|+|||.++.+.+-
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999997664433
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.42 Score=52.39 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=26.7
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
+...++|||||+|.+.... ...+.+.+..-++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999987543 344555566656666555544
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.08 E-value=0.18 Score=53.30 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 53 ai~~il~-----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
-+..++. |.-+++.|++|+|||...+..+.... . .+.++++++-. +-..|+.....+++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~----~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A----AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-h----cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 3455554 34588999999999986553333322 1 35678888864 44567666666654
No 325
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.46 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHhc--CC---cEEEEcCCCChHHHHHHHHHHHHh
Q 009477 46 PTPIQRKTMPLILS--GA---DVVAMARTGSGKTAAFLVPMLQRL 85 (534)
Q Consensus 46 ~~~~Q~~ai~~il~--~~---d~i~~a~TGsGKT~~~l~p~l~~l 85 (534)
++|+|+.++..+.. ++ -.++.||.|.|||..+...+-..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 36889988887764 32 488999999999987664443333
No 326
>PRK05973 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.13 Score=49.33 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHCCCCC----------CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEE
Q 009477 27 SLNLSPNVFRAIKRKGYKV----------PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (534)
Q Consensus 27 ~l~l~~~l~~~l~~~g~~~----------~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~ 96 (534)
.+.++..+=+.-.+.||.. +||... ..--+..|.-+++.|++|+|||...+-.+.+.+. .|.++
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~v 95 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-----SGRTG 95 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeE
Confidence 4566666666666778863 444222 2223334566899999999999876644443332 36778
Q ss_pred EEEcCcHHHHHHHHHHHHHhh
Q 009477 97 LILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~ 117 (534)
++++-.-. ..|+.+.+..++
T Consensus 96 lyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 96 VFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred EEEEEeCC-HHHHHHHHHHcC
Confidence 88876533 456666666553
No 327
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.97 E-value=0.7 Score=42.65 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=80.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC------cHHHHHHHHHHHHHhhccCCCeEEEEEcCCC
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP------TRDLALQTLKFTKELGRYTDLRISLLVGGDS 132 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P------treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~ 132 (534)
....+++...+|.|||.+.+--++..+. .|.+|+++-= +-|+ ..++.+ .++.+.. .|..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----~G~~V~ivQFlKg~~~~GE~-----~~l~~l---~~v~~~~--~g~~ 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG-----HGKKVGVVQFIKGAWSTGER-----NLLEFG---GGVEFHV--MGTG 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH-----CCCeEEEEEEecCCCccCHH-----HHHhcC---CCcEEEE--CCCC
Confidence 4567999999999999998866665544 3667777631 1121 122222 1222221 1221
Q ss_pred HHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcEEEEEeeCC
Q 009477 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 133 ~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~ll~SAT~~ 210 (534)
..... .+.+--+......+....+ .+.-..+++||+||.-...+.++ .+.+.+++...|+..-+|+.--.+|
T Consensus 86 ~~~~~----~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 86 FTWET----QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred CcccC----CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11000 0000000111112222221 13345789999999998887775 5678888888888888888888888
Q ss_pred HHHHHHHHh
Q 009477 211 SALAEFAKA 219 (534)
Q Consensus 211 ~~~~~~~~~ 219 (534)
+++.+.+..
T Consensus 160 ~~Lie~ADl 168 (191)
T PRK05986 160 RELIEAADL 168 (191)
T ss_pred HHHHHhCch
Confidence 888777654
No 328
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.97 E-value=0.23 Score=58.55 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=64.7
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-cccccCCCCCCCE
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-VAARGIDIPLLDN 337 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-v~a~GlDip~v~~ 337 (534)
+..+.+++|.+||+..+..++..+... ++.+..++|..+..++..+++...+|..+|+|+|. .+...+++.++.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 446789999999999999998887753 45677889999999999999999999999999995 4555677778888
Q ss_pred EEE
Q 009477 338 VIN 340 (534)
Q Consensus 338 VI~ 340 (534)
+|.
T Consensus 726 LVI 728 (1147)
T PRK10689 726 LIV 728 (1147)
T ss_pred EEE
Confidence 773
No 329
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.91 E-value=0.7 Score=47.52 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.++++.||+|+|||.+.-
T Consensus 41 ~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 330
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.91 E-value=0.22 Score=45.67 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=58.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
.-.++.||.+||||...+.-+. +.. ..|.++++..|...- +++ .....-.-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~-~~~----~~g~~v~vfkp~iD~---------R~~----~~~V~Sr~G~~-------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRAR-RYK----EAGMKVLVFKPAIDT---------RYG----VGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHH-HHH----HcCCeEEEEeccccc---------ccc----cceeeeccCCc--------
Confidence 3468899999999996442222 222 247789999995321 121 11111111221
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHH
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~ 194 (534)
-+-++|-.+..+++.+...+ ...+++.|.+|||+-+.+ .....+.++..
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQF~~~-~~v~~l~~lad 107 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQFFDE-ELVYVLNELAD 107 (201)
T ss_pred --ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhHhCCH-HHHHHHHHHHh
Confidence 24467777888888887532 122388999999997433 23344444443
No 331
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.90 E-value=0.07 Score=52.16 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhc-CC-CCCeEEEEEcCcHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQH-VP-QGGVRALILSPTRDL 105 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~-~~-~~g~~~Lil~PtreL 105 (534)
.++.|||||||+-.. ..+... .. .....|++|+|+...
T Consensus 90 ~~VYGPTG~GKSqLl-----RNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL-----RNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHHH-----HHhhhcCcccCCCCceEEECCCCCC
Confidence 678999999999632 222221 11 123469999998644
No 332
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.89 E-value=0.15 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHh
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRL 85 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l 85 (534)
.++++.||+|+|||.+....+-+.+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4699999999999998765544433
No 333
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.86 E-value=0.49 Score=45.51 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
.|.-+++.|++|+|||...+--+.+.+.. .|.++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeC
Confidence 45668999999999998655444444333 2667999984
No 334
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.81 E-value=0.23 Score=46.93 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
+++++||+|.|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 59999999999998543
No 335
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.81 E-value=0.29 Score=47.93 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhc
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQH 88 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~ 88 (534)
+++.||||||||.. +..++..+.++
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 88999999999986 66778887765
No 336
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.76 E-value=5 Score=43.75 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHhcC-CCCeEEEEEcChhhHHHHHHHHHHcCCCc------eeecCCCCHHHHHHHHHHHh----cCC
Q 009477 248 QEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEP------SVCYGDMDQDARKIHVSRFR----ARK 316 (534)
Q Consensus 248 ~~~k~~~L~~~l~~~~~-~~~~~IVF~~t~~~~e~l~~~L~~~~~~~------~~l~g~~~~~~r~~~~~~F~----~g~ 316 (534)
...-...|-..+.+..+ -.+.+++|+++......+.+.....|+-. .+++...+. -+.+++.|. .|.
T Consensus 610 s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 610 SPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGR 687 (821)
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCC
Confidence 33444455444443221 23889999999999988888887655321 122222221 345566664 355
Q ss_pred cEEEEEe--CcccccCCCCC--CCEEEEcCCCCC-h-------------------------------hhhHHhhccCCCC
Q 009477 317 TMFLIVT--DVAARGIDIPL--LDNVINWDFPPK-P-------------------------------KIFVHRVGRAARA 360 (534)
Q Consensus 317 ~~iLI~T--dv~a~GlDip~--v~~VI~~~~p~s-~-------------------------------~~~~qr~GR~gR~ 360 (534)
-.||++. .-+++|||+.+ ++.||..++|.. + ...-|-+|||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5676554 67899999985 667888887732 0 1127899999998
Q ss_pred CCcceEEEEeccc
Q 009477 361 GRTGTAFSFVTSE 373 (534)
Q Consensus 361 g~~G~~i~~~~~~ 373 (534)
-++=-++.+++..
T Consensus 768 ~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 768 RKDYASIYLLDKR 780 (821)
T ss_pred hccceeEEEehhh
Confidence 7766666666543
No 337
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.72 E-value=0.52 Score=49.05 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.++++.|++|+|||...-
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998644
No 338
>PTZ00293 thymidine kinase; Provisional
Probab=93.71 E-value=0.2 Score=46.97 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
|+-.++.||++||||.-.+-.+. +... .|.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~-~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVK-RFTY----SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHH-HHHH----cCCceEEEEecc
Confidence 45578899999999975443322 2222 367799999963
No 339
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.69 E-value=0.33 Score=55.81 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-C
Q 009477 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-D 324 (534)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-d 324 (534)
.|.+..++..-.....+.|+.|.|||.--|+.-++.|+++ .+++..+.--.+..+...+++...+|+++|+|+| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 3556666666666677899999999987777776666654 5667778877888999999999999999999999 7
Q ss_pred cccccCCCCCCCEEE
Q 009477 325 VAARGIDIPLLDNVI 339 (534)
Q Consensus 325 v~a~GlDip~v~~VI 339 (534)
.+..++-+.++.++|
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 789999999999988
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.68 E-value=0.32 Score=54.51 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=24.5
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHH
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~ 212 (534)
...++|+||+|++... ....++..+ ++.++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4568999999996532 122333333 346678888875443
No 341
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.65 E-value=1.2 Score=48.91 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=81.2
Q ss_pred CcHHHHHHHHHHh---cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC-
Q 009477 46 PTPIQRKTMPLIL---SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD- 121 (534)
Q Consensus 46 ~~~~Q~~ai~~il---~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~- 121 (534)
|+|.=.+=|..+. ..+-.++.+|-|-|||.+..+.+...+.. .|.+++|.+|...-+.++.+.++.+....+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~ 245 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQH 245 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHHHHhcc
Confidence 3444444444433 45668899999999999876555533321 367899999999999998887776654221
Q ss_pred -------CeEEEEEcCCCH-HHHH-HHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHH
Q 009477 122 -------LRISLLVGGDSM-ESQF-EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (534)
Q Consensus 122 -------l~~~~~~gg~~~-~~~~-~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~ 191 (534)
-.+..+.||... .-.. .... +...|..++.+. ....-.+++++|+|||.-+-.. ....+.-
T Consensus 246 ~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~--------~s~RG~~~DLLIVDEAAfI~~~-~l~aIlP 316 (752)
T PHA03333 246 KPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSP--------NAARGQNPDLVIVDEAAFVNPG-ALLSVLP 316 (752)
T ss_pred ccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccC--------CCcCCCCCCEEEEECcccCCHH-HHHHHHH
Confidence 111222222210 0000 0000 012333333221 1122235689999999987652 3333444
Q ss_pred HHHhcCCCCcEEEEEeeC
Q 009477 192 ILGQLSENRQTLLFSATL 209 (534)
Q Consensus 192 i~~~~~~~~q~ll~SAT~ 209 (534)
++.. .+.+++++|.+-
T Consensus 317 ~l~~--~~~k~IiISS~~ 332 (752)
T PHA03333 317 LMAV--KGTKQIHISSPV 332 (752)
T ss_pred HHcc--CCCceEEEeCCC
Confidence 4433 356667777774
No 342
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.65 E-value=0.48 Score=48.48 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
.....+|||||+|.|.... ...+.++++.-+.+..++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 3467899999999987543 44566666665555555666533
No 343
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.53 E-value=0.33 Score=44.08 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=43.9
Q ss_pred CCCeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHh
Q 009477 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (534)
-..+++||+||+-...+.++ .+.+.+++...|+..-+++..-.+|+.+.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 45789999999998777664 4677788888888888888888899988877654
No 344
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.52 E-value=0.66 Score=46.24 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=73.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEE-EcCCCHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLL-VGGDSMESQFEE 139 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~-~gg~~~~~~~~~ 139 (534)
+++.|..|+|||+... ++.......|.++++.+- -|+=|.. +++.+++..++.+..- .|++...-
T Consensus 142 il~vGVNG~GKTTTIa-----KLA~~l~~~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~DpAaV---- 209 (340)
T COG0552 142 ILFVGVNGVGKTTTIA-----KLAKYLKQQGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADPAAV---- 209 (340)
T ss_pred EEEEecCCCchHhHHH-----HHHHHHHHCCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCcHHH----
Confidence 6789999999999755 222222235777777764 2443332 3444444445655442 23322211
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCc-----EEEE-EeeCCHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQ-----TLLF-SATLPSA 212 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q-----~ll~-SAT~~~~ 212 (534)
.++.+.. ..-.++++|++|=|=||-+. ...+.+.+|.+-+.+... +++. -||...+
T Consensus 210 --------------afDAi~~---Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 210 --------------AFDAIQA---AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred --------------HHHHHHH---HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 2333332 33457788888888887653 456777777766654432 4444 8888766
Q ss_pred HHHHHHhc
Q 009477 213 LAEFAKAG 220 (534)
Q Consensus 213 ~~~~~~~~ 220 (534)
-..-++.+
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 55544443
No 345
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.52 Score=47.52 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=27.9
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
-...+++|||+||.|.... ...+.++++.=|+...+++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3568899999999988643 45556666664555555554444
No 346
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.49 E-value=0.1 Score=49.87 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=15.8
Q ss_pred EEEeCcccccCCCCCCCEEEEcC
Q 009477 320 LIVTDVAARGIDIPLLDNVINWD 342 (534)
Q Consensus 320 LI~Tdv~a~GlDip~v~~VI~~~ 342 (534)
-+.|---+.|..++.+.+++.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 45666667899998776666544
No 347
>PRK06904 replicative DNA helicase; Validated
Probab=93.46 E-value=0.88 Score=48.55 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=59.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcC--CCHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG--DSMESQ 136 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg--~~~~~~ 136 (534)
.|.=+|+.|+||.|||...+ -+...+... .|..+++++.. .=..|+...+-.. ..++....+..| .+.+++
T Consensus 220 ~G~LiiIaarPg~GKTafal-nia~~~a~~---~g~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAM-NLCENAAMA---SEKPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred CCcEEEEEeCCCCChHHHHH-HHHHHHHHh---cCCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccCCCCCHHHH
Confidence 34558899999999998554 222222211 36678888765 3344544433222 122322222223 223332
Q ss_pred H------HHHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC
Q 009477 137 F------EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (534)
Q Consensus 137 ~------~~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~ 183 (534)
. ..+...+.+.|- |+..+...+.+.. .....+++||||=.+.+...
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCCC
Confidence 2 223234556663 3344443332211 01125789999988877543
No 348
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.42 E-value=1.1 Score=47.23 Aligned_cols=57 Identities=23% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
|+.+.++.=.+.+.-+..|.-+++.|+||+|||...+--+...... .|..+++++..
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSlE 232 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSLE 232 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECC
Confidence 4443333333333333345568999999999998665443333222 36678888843
No 349
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.89 Score=50.02 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
+...++|||||+|.|.... ...+.+.+..-+... ++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 4578899999999876533 233444444444333 3333333
No 350
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.36 Score=49.85 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=33.1
Q ss_pred CeeEEEEcCCCccccC-ChHHHHHHHHHhcCCC-CcEEEEEeeCCHHHH
Q 009477 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSEN-RQTLLFSATLPSALA 214 (534)
Q Consensus 168 ~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~-~q~ll~SAT~~~~~~ 214 (534)
++++++||.++.+... ...+.+-.++..+..+ .|+++.|-.+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999988765 3555666666665544 477777777776654
No 351
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=0.85 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQR 84 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~ 84 (534)
..+++||.|+|||.++.+.+-..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999776544333
No 352
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.31 E-value=1 Score=50.77 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcC-CCCcEEEEEee
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSAT 208 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~-~~~q~ll~SAT 208 (534)
..+.+|||||+|.+...+ ...+..+++... ...++++...+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346789999999988642 344444444321 23455544444
No 353
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.28 E-value=0.75 Score=47.82 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHH
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~ 212 (534)
....+++||||+|+|.... ...+.+.++.-+++.. +++.+|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~-fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTV-WLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCe-EEEEECChHH
Confidence 3567899999999987543 3445556655444544 4444443333
No 354
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.25 E-value=0.12 Score=55.49 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhc
Q 009477 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~ 88 (534)
+|+.||.+.+..+. .|+-.|..+|||+|||+..+-..+.+|..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 49999998876543 588899999999999999888888877543
No 355
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.20 E-value=0.47 Score=47.72 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
...++||+||||.|... -...+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 57899999999998763 2444445555545555555544
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.16 E-value=0.88 Score=43.41 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
|..+++.|++|+|||...+..+.+.+. .|..+++++-. +-..++.+..+.+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e-~~~~~i~~~~~~~ 70 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTE-ESRESIIRQAAQF 70 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEcc-CCHHHHHHHHHHh
Confidence 567999999999999865543333332 35567777753 2334544444444
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.51 Score=51.03 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
.....++||||+|++.... ...+.+.+..-|....+++.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987543 345556666655555555443
No 358
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.04 E-value=0.17 Score=53.18 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHhcCCc--EEEEcCCCChHHHHHHHHHHHHhhh
Q 009477 46 PTPIQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQ 87 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d--~i~~a~TGsGKT~~~l~p~l~~l~~ 87 (534)
+++.|.+.+..++.... +++.||||||||.. +..+++.+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 36788888877776544 78899999999986 4455555443
No 359
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=1.3 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQ 83 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~ 83 (534)
..++.||.|+|||.++.+.+-.
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999977644443
No 360
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=93.02 E-value=0.49 Score=47.01 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCH-HHHHHHH-hCCCCEEEECchHHHHHH
Q 009477 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM-ESQFEEL-AQNPDIIIATPGRLMHHL 158 (534)
Q Consensus 81 ~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~-~~~~~~~-~~~~~IiV~Tp~~l~~~l 158 (534)
.+.++.+.....|..+||.+|+++...|++..++.- ....+++.+++.+.. .+....+ .+..+|+|+| ..+
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~--~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TIL 365 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKK--LPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TIL 365 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhh--CCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehh
Confidence 344444444456888999999999999999988553 234555666654432 2233333 3567899998 344
Q ss_pred HhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHH
Q 009477 159 SEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (534)
Q Consensus 159 ~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~ 194 (534)
+ ..+.+.+++++|++-.|+++.. ..+.+|.-
T Consensus 366 E--RGVTfp~vdV~Vlgaeh~vfTe---saLVQIaG 396 (441)
T COG4098 366 E--RGVTFPNVDVFVLGAEHRVFTE---SALVQIAG 396 (441)
T ss_pred h--cccccccceEEEecCCcccccH---HHHHHHhh
Confidence 4 3688999999999999998753 34444443
No 361
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.99 E-value=0.37 Score=48.17 Aligned_cols=67 Identities=25% Similarity=0.377 Sum_probs=43.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHH-hcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 35 FRAIKRKGYKVPTPIQRKTMPLI-LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 35 ~~~l~~~g~~~~~~~Q~~ai~~i-l~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
+..+.+.|. +++.|.+.+..+ ..+++++++|+||||||... -.++..+... ..+.+++++-.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc--CCCceEEEECCchhhc
Confidence 444555564 456666676544 44678999999999999853 3344443321 1256789998888874
No 362
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.98 E-value=0.39 Score=48.19 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=55.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
..+|++||+|+|||..+- .+.........+.+=++-|..-+..+.+.++.--+
T Consensus 163 pSmIlWGppG~GKTtlAr-----lia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~---------------------- 215 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLAR-----LIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN---------------------- 215 (554)
T ss_pred CceEEecCCCCchHHHHH-----HHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH----------------------
Confidence 369999999999998543 22223333345566666665544444433332110
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
.......-.++.+||.|+ |....+.++--.-++--+++..||-
T Consensus 216 ---------------------~~~l~krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 216 ---------------------EKSLTKRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred ---------------------HHhhhcceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEeccc
Confidence 001122345788999999 5555555544333566788888884
No 363
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.96 E-value=0.63 Score=47.86 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
.....++||||+|.|... -...+.+.++.-+....++++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356789999999987653 3445556666655556566655553
No 364
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.95 E-value=0.62 Score=50.46 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+++||||+|.|....+ ..+.+.+..-|....+++.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999999876433 34455555555555555544
No 365
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.80 E-value=0.18 Score=48.11 Aligned_cols=131 Identities=20% Similarity=0.211 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc-------CCCeEEEEEcCCC
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------TDLRISLLVGGDS 132 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~-------~~l~~~~~~gg~~ 132 (534)
|..+++.|++|||||...+--+.+.+... |.++++++-. +-..++.+.++.++-. ..+.+.-......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 45699999999999987665555554431 4568888843 3345555555554311 0111111110000
Q ss_pred HHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc----CChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG----MGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 133 ~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~----~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
.. . -..++.+...+.. .+.-...+.+|+|-...+.. ..+...+..+...+.....+.++++.
T Consensus 94 --~~--------~--~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 94 --GW--------S--PNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp --T---------T--SCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred --cc--------c--ccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00 0 1122333333322 01111237899998887621 22455566666666666667777777
Q ss_pred C
Q 009477 209 L 209 (534)
Q Consensus 209 ~ 209 (534)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 366
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.73 E-value=0.13 Score=56.11 Aligned_cols=168 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHhcCCc----------EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 46 PTPIQRKTMPLILSGAD----------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d----------~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
++..|.+++-..-+-.+ +++-...|-||-....--|++...+. .+++|+++-+..|--.....+..
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG----RKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG----RKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc----cceeEEEEeccccccchhhchhh
Q ss_pred hhccCCCeEEEEEcCCCHHHHHHHHhC-CCCEEEECchHH--------------HHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 116 LGRYTDLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRL--------------MHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~~~~-~~~IiV~Tp~~l--------------~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
.+ .+++.+..+.--......-..-.+ .-.|+++|+..| +.-+.. .+.-+.=++|||||||+.
T Consensus 341 ig-A~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllq--W~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 341 IG-ATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQ--WCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred cC-CCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHH--HhhhccceeEEehhhhhh
Q ss_pred cc---------CChHHHHHHHHHhcCCCCcEEEEEeeC---CHHHHHHHHhcC
Q 009477 181 FG---------MGFAEQLHKILGQLSENRQTLLFSATL---PSALAEFAKAGL 221 (534)
Q Consensus 181 ~~---------~~~~~~~~~i~~~~~~~~q~ll~SAT~---~~~~~~~~~~~l 221 (534)
-+ ......+.++-..+| +.+++.-|||= |+++.-..+.++
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMaYM~RLGl 469 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMAYMVRLGL 469 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhhhhhhhcc
No 367
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.67 E-value=0.51 Score=49.13 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=82.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 009477 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (534)
Q Consensus 33 ~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (534)
.++..|++ .+-.+-..|+++.=..-.|+. .+.|-.|||||.....-+.+. +...+..++++.+=|+.|+.|+...
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l---h~knPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL---HSKNPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH---hcCCCCceEEEEeehHHHHHHHHHH
Confidence 45555554 344455677777644455655 678888999998655433332 3445678899999999999999987
Q ss_pred HHHhhcc-----C---CCeEEEEEcCCCHHHH---HHHHhCCCCEEEECc-----hHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 113 TKELGRY-----T---DLRISLLVGGDSMESQ---FEELAQNPDIIIATP-----GRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 113 ~~~~~~~-----~---~l~~~~~~gg~~~~~~---~~~~~~~~~IiV~Tp-----~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
+.+|... . .+.++.-.||.+.+.. +...+....+-++-. +....++.. .-+..-+++|.+||
T Consensus 226 v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~--~~~~~~yD~ilIDE 303 (660)
T COG3972 226 VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD--INNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh--hhccccccEEEecc
Confidence 7776521 1 2333444455544332 222233333333322 122233332 12366789999999
Q ss_pred CCc
Q 009477 177 ADC 179 (534)
Q Consensus 177 ah~ 179 (534)
++.
T Consensus 304 ~QD 306 (660)
T COG3972 304 SQD 306 (660)
T ss_pred ccc
Confidence 998
No 368
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.66 E-value=0.74 Score=46.32 Aligned_cols=136 Identities=18% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCcHHHHHHHHHHhc----CC---cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh-
Q 009477 45 VPTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL- 116 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~----~~---d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~- 116 (534)
.++|+|+..+..+.. ++ -.++.|+.|.||+..+...+-..+..... .+ ..=-|+ .++.+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~--~Cg~C~----------sC~~~~ 69 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SE--ACGFCH----------SCELMQ 69 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CC--CCCCCH----------HHHHHH
Confidence 367888888876643 33 48899999999998665444444443311 11 000111 12222
Q ss_pred -hccCCCeEEEEEc-CCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHH
Q 009477 117 -GRYTDLRISLLVG-GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (534)
Q Consensus 117 -~~~~~l~~~~~~g-g~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~ 194 (534)
+...++....-.+ |.. |-|-.--.+.+.+.. .......+++|||+||+|.... ...+.++++
T Consensus 70 ~g~HPD~~~i~p~~~~~~-------------I~vdqiR~l~~~~~~--~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLE 133 (319)
T PRK06090 70 SGNHPDLHVIKPEKEGKS-------------ITVEQIRQCNRLAQE--SSQLNGYRLFVIEPADAMNESA-SNALLKTLE 133 (319)
T ss_pred cCCCCCEEEEecCcCCCc-------------CCHHHHHHHHHHHhh--CcccCCceEEEecchhhhCHHH-HHHHHHHhc
Confidence 2223333221110 111 111111111222221 1234568999999999987543 455566666
Q ss_pred hcCCCCcEEEEEeeC
Q 009477 195 QLSENRQTLLFSATL 209 (534)
Q Consensus 195 ~~~~~~q~ll~SAT~ 209 (534)
.=|++..+++.|..+
T Consensus 134 EPp~~t~fiL~t~~~ 148 (319)
T PRK06090 134 EPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCCCCeEEEEEECCh
Confidence 655555555555543
No 369
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.65 E-value=1.8 Score=43.33 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
..++|++||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988643 2445666666666666655544
No 370
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.60 E-value=0.45 Score=53.61 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=27.9
Q ss_pred eeEEEEcCCCccccCCh----HHHHHHHHHhcCCCCcEEEEEeeCCHHH
Q 009477 169 VEYVVFDEADCLFGMGF----AEQLHKILGQLSENRQTLLFSATLPSAL 213 (534)
Q Consensus 169 ~~~iViDEah~l~~~~~----~~~~~~i~~~~~~~~q~ll~SAT~~~~~ 213 (534)
-.+++|||+|.+...+- ...+..++..+-....+.+..||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 45899999999875432 2334445554444556667777755553
No 371
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.51 E-value=0.68 Score=47.01 Aligned_cols=136 Identities=17% Similarity=0.088 Sum_probs=67.8
Q ss_pred CcHHHHHHHHHHhc----CC---cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh-
Q 009477 46 PTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG- 117 (534)
Q Consensus 46 ~~~~Q~~ai~~il~----~~---d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~- 117 (534)
++|+|+.++..+.+ |+ -.++.||.|+||+..+...+-..+.......+ .-=-|+ .++.+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~--~Cg~C~----------sC~~~~~ 70 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK--SCGHCR----------GCQLMQA 70 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCCCCH----------HHHHHHc
Confidence 57888888876643 33 47899999999998766444444443211111 111122 222222
Q ss_pred -ccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhc
Q 009477 118 -RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (534)
Q Consensus 118 -~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~ 196 (534)
...++....-.++. ..|-|-.--.+.+.+.. .......+++|||+||.|.... ...+.++++.=
T Consensus 71 g~HPD~~~i~p~~~~------------~~I~idqiR~l~~~~~~--~~~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEP 135 (334)
T PRK07993 71 GTHPDYYTLTPEKGK------------SSLGVDAVREVTEKLYE--HARLGGAKVVWLPDAALLTDAA-ANALLKTLEEP 135 (334)
T ss_pred CCCCCEEEEeccccc------------ccCCHHHHHHHHHHHhh--ccccCCceEEEEcchHhhCHHH-HHHHHHHhcCC
Confidence 22333322111110 01111111112222221 1224578999999999987643 45555666654
Q ss_pred CCCCcEEEEEee
Q 009477 197 SENRQTLLFSAT 208 (534)
Q Consensus 197 ~~~~q~ll~SAT 208 (534)
|++..++|.|.-
T Consensus 136 p~~t~fiL~t~~ 147 (334)
T PRK07993 136 PENTWFFLACRE 147 (334)
T ss_pred CCCeEEEEEECC
Confidence 445555555544
No 372
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.53 Score=47.95 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=32.6
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~ 76 (534)
+.+..+|+..=|++.+-+.|...-..+-+-- .+----++++..||+|+|||.+
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATANTK-----KHQAPFRNILFYGPPGTGKTMF 400 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhcccc-----cccchhhheeeeCCCCCCchHH
Confidence 3445678888888888777764322110000 0000126899999999999985
No 373
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=0.86 Score=49.79 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=26.3
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+++||||+|.|.... ...+.+.+...|....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4578899999999987654 334455666555555445444
No 374
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=2.1 Score=46.99 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=25.5
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+++||||+|.|.... ...+.+.+..-|+...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4578999999999877533 345555566555444444433
No 375
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.42 E-value=0.67 Score=45.24 Aligned_cols=138 Identities=27% Similarity=0.304 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt---reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~ 136 (534)
|.=+++.|+||.|||...+-.+.+.+.. .+..+++++.. .+++..+... .+ ++....+..|.-....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~----~~~~vly~SlEm~~~~l~~R~la~---~s---~v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN----GGYPVLYFSLEMSEEELAARLLAR---LS---GVPYNKIRSGDLSDEE 88 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT----TSSEEEEEESSS-HHHHHHHHHHH---HH---TSTHHHHHCCGCHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHH---hh---cchhhhhhccccCHHH
Confidence 3458899999999998766555544443 25779999975 3443333222 11 1211112222222222
Q ss_pred HH-------HHhCCCCEEEECch----HHHHHHHhcCCCCCCCeeEEEEcCCCccccC----ChHHHHHHHHHhcC----
Q 009477 137 FE-------ELAQNPDIIIATPG----RLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----GFAEQLHKILGQLS---- 197 (534)
Q Consensus 137 ~~-------~~~~~~~IiV~Tp~----~l~~~l~~~~~~~l~~~~~iViDEah~l~~~----~~~~~~~~i~~~~~---- 197 (534)
+. .+....-.+..+|+ .+...+..... ....+++||||=.|.+... +....+..+.+.+.
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 22233333345443 44444443211 1268899999999987753 23344444433221
Q ss_pred -CCCcEEEEEee
Q 009477 198 -ENRQTLLFSAT 208 (534)
Q Consensus 198 -~~~q~ll~SAT 208 (534)
-+..++++|-.
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 24556665554
No 376
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=1.9 Score=42.26 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=68.8
Q ss_pred HHHhcCC-----cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEc
Q 009477 55 PLILSGA-----DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129 (534)
Q Consensus 55 ~~il~~~-----d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g 129 (534)
|++..|+ .+++.||+|+||++.+-.-+-+ .+ ...+-+.+..|+..|.-.-.++.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--------An-STFFSvSSSDLvSKWmGESEkLVk----------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--------AN-STFFSVSSSDLVSKWMGESEKLVK----------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--------cC-CceEEeehHHHHHHHhccHHHHHH-----------
Confidence 6666664 4999999999998743311111 12 356666777776655443333220
Q ss_pred CCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC---hHHHHH----HHHHhcC----C
Q 009477 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLH----KILGQLS----E 198 (534)
Q Consensus 130 g~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~---~~~~~~----~i~~~~~----~ 198 (534)
.|+.+.. -+..+.|.|||.|.+...+ -.+... +++-++. .
T Consensus 216 -----------------------nLFemAR------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d 266 (439)
T KOG0739|consen 216 -----------------------NLFEMAR------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND 266 (439)
T ss_pred -----------------------HHHHHHH------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC
Confidence 0233332 2345689999999776432 111222 2232332 3
Q ss_pred CCcEEEEEeeCCH-HHHHHHHhcCCCCeEEEec
Q 009477 199 NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLD 230 (534)
Q Consensus 199 ~~q~ll~SAT~~~-~~~~~~~~~l~~~~~i~~~ 230 (534)
+-.++.+.||--+ .+...++.-+....+|.++
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred CCceEEEecCCCchhHHHHHHHHhhcceeccCC
Confidence 4567888888544 3444555544444444443
No 377
>PHA00729 NTP-binding motif containing protein
Probab=92.29 E-value=1.4 Score=41.93 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHH----HHHHHHHhcCCCCcEEEEEeeCCHHHHHHHH
Q 009477 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAE----QLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (534)
Q Consensus 144 ~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~----~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (534)
....+.+.+.++..+.... -.....+++|+||+=--. ...++. ....+...+.....++.+...-|..+....+
T Consensus 59 ~~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CcEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 3455555555665554311 112345789999943111 111221 1112223333345666666666677766666
Q ss_pred hc
Q 009477 219 AG 220 (534)
Q Consensus 219 ~~ 220 (534)
.-
T Consensus 138 ~R 139 (226)
T PHA00729 138 EK 139 (226)
T ss_pred hC
Confidence 53
No 378
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=0.59 Score=52.92 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=24.0
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~ 205 (534)
...+++||||+|+|.... ...+.+++..-|....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999986433 34445555554544544443
No 379
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.59 Score=50.24 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.1
Q ss_pred EEEEcCCCChHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVP 80 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p 80 (534)
+++.||.|+|||.+..+.
T Consensus 39 ~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 599999999999976543
No 380
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=0.57 Score=51.38 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
..++++||||+|+|....|.. +.+.+..-|....+++ .+|-
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL-~Ttd 163 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVL-ATTD 163 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEE-EECC
Confidence 468899999999988655433 4444444444444444 3343
No 381
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.01 E-value=1.3 Score=47.24 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCcHHHHHHHHHHhc------C----CcEEEEcCCCChHHHHHHHHHHH-HhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 009477 45 VPTPIQRKTMPLILS------G----ADVVAMARTGSGKTAAFLVPMLQ-RLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~------~----~d~i~~a~TGsGKT~~~l~p~l~-~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
.+-|+|.-++-.+.. | +-+++.-+-+-|||......++. .+..+ ..|....|++|+.+-+.+..+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 488999999988873 1 23666666777999755433333 33333 35778999999999999988877
Q ss_pred HHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECch---HHHHHHHh-cCCCCCCCeeEEEEcCCCccccCChHHHH
Q 009477 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPG---RLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (534)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~---~l~~~l~~-~~~~~l~~~~~iViDEah~l~~~~~~~~~ 189 (534)
+....... +... ......+-...+.. ..+..+.. ....+=.+..+.|+||.|.....+ +.+
T Consensus 139 r~mv~~~~----------~l~~---~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 139 RDMVKRDD----------DLRD---LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHhCc----------chhh---hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 76553322 0000 00111111111111 11111111 112334466789999999976642 444
Q ss_pred HHHHHhc--CCCCcEEEEEe
Q 009477 190 HKILGQL--SENRQTLLFSA 207 (534)
Q Consensus 190 ~~i~~~~--~~~~q~ll~SA 207 (534)
..+...+ .++.+++..|-
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 5554443 34556666554
No 382
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.01 E-value=1.5 Score=50.99 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
..--+||||++|.+.+......+..+++..|.+..+++.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 344589999999987777777888999999999999888877543
No 383
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.90 E-value=1.6 Score=49.37 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.++++.|++|+|||...-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999998654
No 384
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.89 E-value=1.1 Score=41.31 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=24.6
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
.....+|||||+|++.... ...+...+..-++... +.+.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~-~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTL-FILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeE-EEEEEC
Confidence 4567899999999987532 3445555555443333 334433
No 385
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.85 E-value=1.3 Score=46.74 Aligned_cols=112 Identities=19% Similarity=0.088 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCC-CHHHH--
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQ-- 136 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~-~~~~~-- 136 (534)
|.-+++.|+||+|||...+--+...... .|..+++++..- =..|+...+-... .++....+..|. ...++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlEm-~~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLEM-SAEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCcC-CHHHHHHHHHHHh--cCCCHHHhccCCCCHHHHHH
Confidence 4458899999999998655333332222 356788887642 2334333332222 223222222222 22222
Q ss_pred ----HHHHhCCCCEEE-EC----chHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 137 ----FEELAQNPDIII-AT----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 137 ----~~~~~~~~~IiV-~T----p~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
...+.. ..+.| .+ +..+...+.... .-..+++||||=.+.+.
T Consensus 268 ~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 268 LTSAAGKLSE-APLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 122222 33444 23 334444333211 11347899999988765
No 386
>PF14516 AAA_35: AAA-like domain
Probab=91.76 E-value=2 Score=43.61 Aligned_cols=129 Identities=23% Similarity=0.337 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH----H--HHHHHH-HHHHhhcc
Q 009477 48 PIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD----L--ALQTLK-FTKELGRY 119 (534)
Q Consensus 48 ~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre----L--a~Q~~~-~~~~~~~~ 119 (534)
|+.++++..+.+ |.-+.+.||-.+|||.... -+.+.+.. .|.+++.+.-... + ..++.. .+..+++.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~-~l~~~l~~----~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~ 92 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSLLL-RLLERLQQ----QGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQ 92 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHHHH-HHHHHHHH----CCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHH
Confidence 489999999887 8999999999999998533 33334333 3666776654321 0 112222 22334444
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHh
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQ 195 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~ 195 (534)
.++. ....+.+.. .++.+.++...+++.---..+.-=++++||+|.+++. .+...+...++.
T Consensus 93 L~l~-------~~l~~~w~~-------~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~ 155 (331)
T PF14516_consen 93 LKLD-------EKLDEYWDE-------EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRS 155 (331)
T ss_pred cCCC-------hhHHHHHHH-------hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHH
Confidence 4433 122333321 1234444444443200001123348999999999973 333344444433
No 387
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.70 E-value=0.64 Score=48.38 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
.++.-+|+++|--+...+.+.+. .+..|.-++... +...+.+++.||+|+|||...-
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHHH
Confidence 34566788886666666555432 223222222111 1235779999999999998643
No 388
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.70 E-value=1.6 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=17.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQ 83 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~ 83 (534)
-.+++||.|+|||.++-+.+-.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999877654433
No 389
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.69 E-value=0.41 Score=43.88 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=27.1
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
+..++++++.|++|+|||..+...+- .+.. .|..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~-~~~~----~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIAN-EAIR----KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHH-HHHH----TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHH-Hhcc----CCcceeEe-ecCceecc
Confidence 34578899999999999987554333 3333 35666665 44566554
No 390
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.68 E-value=1.8 Score=47.75 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=24.4
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
+...+++||||+|.+.... ...+.+.+..-|...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4578899999999987533 334444555544444444443
No 391
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.60 E-value=0.56 Score=49.96 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred EEEEcCCCChHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVP 80 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p 80 (534)
++++||+|+|||..+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999876543
No 392
>PRK08840 replicative DNA helicase; Provisional
Probab=91.60 E-value=2 Score=45.70 Aligned_cols=132 Identities=13% Similarity=0.049 Sum_probs=62.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
|+.+.++.--+.+.-+..|.-+++.|+||.|||...+--+...... .|..+++.+..= =..|+...+-.. ..+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~----~~~~v~~fSlEM-s~~ql~~Rlla~--~s~ 271 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD----QDKPVLIFSLEM-PAEQLMMRMLAS--LSR 271 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh----CCCeEEEEeccC-CHHHHHHHHHHh--hCC
Confidence 4444433333333333345558899999999998654333322222 366788887652 244444432221 122
Q ss_pred CeEEEEE-cCCCHHHHHH------HHhCCCCEEEE-Cc----hHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 122 LRISLLV-GGDSMESQFE------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 122 l~~~~~~-gg~~~~~~~~------~~~~~~~IiV~-Tp----~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
+....+. |..+.+++.+ .+.....+.|- +| ..+...+.+.. .....+++||||=.|.+.
T Consensus 272 v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 272 VDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 2222222 2223333322 22223445553 22 23333222211 111257899999888775
No 393
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.49 E-value=1.1 Score=49.54 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQR 84 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~ 84 (534)
...++.|+.|+|||.++...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 347999999999999766444433
No 394
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.48 E-value=2 Score=41.20 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
|.-+++.|++|+|||......+.+.+. .|.+++++.=... ..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-----QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-----CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 355889999999999866544443332 3667888876533 345555555554
No 395
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.48 E-value=3.3 Score=42.57 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHh-cCCCCcEEEEEeeCCHHH
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQ-LSENRQTLLFSATLPSAL 213 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~-~~~~~q~ll~SAT~~~~~ 213 (534)
+...++.|||.|-. +.+-.--+..++.. +..+.-++..|-++|.++
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 35668999999842 22222233333333 245677788888887763
No 396
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.36 E-value=0.5 Score=48.64 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
+..++++|+||||||... ..++..+.... .+.+++.+=-..|+
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~~~~--~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCGETY--PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHhcC--CCceEEEEecCchh
Confidence 446899999999999853 44555554321 23456666544454
No 397
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.31 E-value=0.64 Score=42.91 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=28.8
Q ss_pred HHHCCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCChHHHHH
Q 009477 38 IKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 38 l~~~g~~~~~~~Q~~ai~~il-~~~d~i~~a~TGsGKT~~~ 77 (534)
|.+.| .+++.|.+.+.... .+..+++.|+||||||...
T Consensus 4 l~~~g--~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQG--TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 44455 45788888887554 4788999999999999854
No 398
>PRK08506 replicative DNA helicase; Provisional
Probab=91.26 E-value=0.95 Score=48.36 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEE-cCCCHHHHH-
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQF- 137 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~-gg~~~~~~~- 137 (534)
|.-+++.|+||.|||...+--+.+. .. .|..+++++.. .=..|+...+-.. ..++....+. |..+..++.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~-~~----~g~~V~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~~~ 263 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKA-LN----QDKGVAFFSLE-MPAEQLMLRMLSA--KTSIPLQNLRTGDLDDDEWER 263 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHH-Hh----cCCcEEEEeCc-CCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHHH
Confidence 4458899999999998665444433 22 36678888765 3344544433221 1222222222 222222221
Q ss_pred -----HHHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 138 -----~~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
..+.. ..+.|- |+..+...+.+... ....+++||||=.+.+.
T Consensus 264 ~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 264 LSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 22223 345443 33344433332111 12358899999998775
No 399
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.23 E-value=1.3 Score=47.82 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=27.0
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+++||||+|+|.... ...+.+.+..-|+...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578999999999987543 344556666656666555544
No 400
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.23 E-value=0.12 Score=61.36 Aligned_cols=94 Identities=28% Similarity=0.380 Sum_probs=74.2
Q ss_pred eEEEEEcChhhHHHHHHHHHHcC-CCceeecCCCC-----------HHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 268 QTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMD-----------QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 268 ~~IVF~~t~~~~e~l~~~L~~~~-~~~~~l~g~~~-----------~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
-.|+|++....+-...+.+.... ..+..+.|.+. +..+..++..|...++++|++|.++.+|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899998888877777776542 22222333221 1235678999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhHHhhccCCCCC
Q 009477 336 DNVINWDFPPKPKIFVHRVGRAARAG 361 (534)
Q Consensus 336 ~~VI~~~~p~s~~~~~qr~GR~gR~g 361 (534)
+.|+.++.|.....|+|..||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997764
No 401
>PRK13764 ATPase; Provisional
Probab=91.23 E-value=0.33 Score=52.86 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
.+++++++|+||||||... ..++..+.. .+..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~~----~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYAD----MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhh----CCCEEEEECCCccc
Confidence 3678999999999999853 445555542 34445555555666
No 402
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.23 E-value=1.3 Score=48.32 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=24.8
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
...+++|+||+|.|.... ...+...+..-|....+++ .+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL-~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIF-ATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEE-ECCChH
Confidence 457899999999876432 3345555555444443344 334333
No 403
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.22 E-value=1.6 Score=45.17 Aligned_cols=130 Identities=20% Similarity=0.193 Sum_probs=79.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
++..|=-|||||++..-.+. ++.+ .|.++++++. .|.-|. +.++.++...++.+-....+.+..+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk----~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~Pv~----- 169 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKK----KGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKDPVE----- 169 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHH----cCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCCHHH-----
Confidence 66789999999998663332 2222 4566666653 333333 3566666666666544421221111
Q ss_pred hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHh
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (534)
|+ ..-+. .+....+++||+|=|-|+- +...-..+.+|-..+.+.--++..-|+........+++
T Consensus 170 -------Ia-----k~al~---~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 170 -------IA-----KAALE---KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred -------HH-----HHHHH---HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 11 11111 1233457889999888765 34466778888888877777888889988877777776
Q ss_pred c
Q 009477 220 G 220 (534)
Q Consensus 220 ~ 220 (534)
+
T Consensus 235 F 235 (451)
T COG0541 235 F 235 (451)
T ss_pred H
Confidence 5
No 404
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.21 E-value=0.13 Score=46.97 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCcccc
Q 009477 138 EELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 138 ~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~ 182 (534)
+......+|||+++.-|++-....... ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444567999999999988765431111 123447899999998764
No 405
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.19 E-value=0.16 Score=45.05 Aligned_cols=116 Identities=20% Similarity=0.328 Sum_probs=66.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeE-EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR-ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~-~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
.+++.|++|+|||+..+ -+.+.+... |.+ .-+++|. +++=++..++++.-+..|...- +..
T Consensus 7 ki~ITG~PGvGKtTl~~-ki~e~L~~~----g~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~--la~- 68 (179)
T COG1618 7 KIFITGRPGVGKTTLVL-KIAEKLREK----GYKVGGFITPE----------VREGGKRIGFKIVDLATGEEGI--LAR- 68 (179)
T ss_pred EEEEeCCCCccHHHHHH-HHHHHHHhc----CceeeeEEeee----------eecCCeEeeeEEEEccCCceEE--EEE-
Confidence 58899999999998644 444454443 322 4566773 4456667788887776544211 000
Q ss_pred hCCCCEEEECchHHHHHHHhcCCC----CCCCeeEEEEcCCCccc--cCChHHHHHHHHHh
Q 009477 141 AQNPDIIIATPGRLMHHLSEVEDM----SLKSVEYVVFDEADCLF--GMGFAEQLHKILGQ 195 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l~~~l~~~~~~----~l~~~~~iViDEah~l~--~~~~~~~~~~i~~~ 195 (534)
.+....-|+-++-..+.+++.-.. .+..-++||+||.--|- ...|.+.+.+++..
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 011233344444444433321000 13446899999998654 45688888887754
No 406
>PRK05748 replicative DNA helicase; Provisional
Probab=90.99 E-value=1.9 Score=45.72 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhhccCCCeEEEEEcCC-CHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGD-SMESQF 137 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~~~~~~l~~~~~~gg~-~~~~~~ 137 (534)
|.-+++.|+||+|||...+--+...... .|..+++++.. .-..|+...+ ...+ ++....+..|. ...++.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~----~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK----TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh----CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHH
Confidence 4558999999999998655333332222 35678888754 2233444433 2222 22222122222 222221
Q ss_pred ------HHHhCCCCEEEE-Cc----hHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 138 ------EELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 138 ------~~~~~~~~IiV~-Tp----~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
..+. +..+.|. +| ..+...+.+... ...++++||||=.+.+.
T Consensus 275 ~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 275 KLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 1222 3345553 33 344443332110 01268899999999875
No 407
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.98 E-value=1.2 Score=43.59 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
|.-+++.|++|+|||...+-.+.+.+. .|.++++++-.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEec
Confidence 455899999999999866644443322 36678888843
No 408
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.98 E-value=0.99 Score=43.27 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=36.3
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHH---HHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHhh
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKT---MPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLN 86 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~a---i~~il~~~-d~i~~a~TGsGKT~~~l~p~l~~l~ 86 (534)
-+|+.+|++..+...+. ..+.+.++.. -+.+..|+ -+.++|+.|||||.+-- .+.+.+.
T Consensus 14 ~g~~~~pf~~~~~~~~~----~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 14 FGFSRLPFSWDIQPGLD----YWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred hhhccCCCccchhhhhh----hhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 46777777766655542 2234444432 24555666 57789999999998765 4444433
No 409
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.93 E-value=1.6 Score=49.50 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=31.2
Q ss_pred CCCCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~ 77 (534)
..-+|++++--+..++.+.+. .+. .|...+.+ -+..++.+++.||+|+|||...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~--~~~~~~~~-gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMK--HPELFEHL-GIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhc-CCCCCceEEEECCCCCChHHHH
Confidence 456788886655665555432 111 11111111 0123577999999999999754
No 410
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=90.87 E-value=1 Score=44.98 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=44.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
-+.-.|+-|..-+..+.+..-+++.||-|+|||+.......+.+..... .++|.-=|
T Consensus 125 ~I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v---~rIiLtRP 181 (348)
T COG1702 125 SIIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQV---RRIILTRP 181 (348)
T ss_pred ceEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhccc---ceeeecCc
Confidence 3556799999999988888889999999999999888777777766532 34555556
No 411
>PRK08006 replicative DNA helicase; Provisional
Probab=90.79 E-value=2.7 Score=44.90 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=57.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEE-cCCCHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQFE 138 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~-gg~~~~~~~~ 138 (534)
|.-+++.|++|.|||...+--+...... .|..+++.+.. .=..|+...+-.. ..++....+. |..+.++|.+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlE-M~~~ql~~Rlla~--~~~v~~~~i~~~~l~~~e~~~ 296 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLE-MPGEQIMMRMLAS--LSRVDQTRIRTGQLDDEDWAR 296 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecc-CCHHHHHHHHHHH--hcCCCHHHhhcCCCCHHHHHH
Confidence 4458889999999998655333332222 36678888765 2234444332221 1223222222 3333333322
Q ss_pred ------HHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 139 ------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 139 ------~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
.+.....+.|- |+..+...+.+.. .....+++||||=.|.+.
T Consensus 297 ~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 297 ISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 22133445554 3333333332210 011258899999998765
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.71 E-value=0.51 Score=46.24 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=37.1
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhc-C-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 37 AIKRKGYKVPTPIQRKTMPLILS-G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 37 ~l~~~g~~~~~~~Q~~ai~~il~-~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
.+.+.|+ .+.|.+.+..++. . ..+++.|+||||||... ..++..+.. .+.+++.+--..|+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~----~~~~iitiEdp~E~ 120 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT----PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC----CCCeEEEECCCcee
Confidence 3455563 5667777765554 3 35889999999999854 334444432 24456666555553
No 413
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.57 E-value=0.69 Score=47.44 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre 104 (534)
.+.-++++||||||||... ..++..+.... ..+.+++.+-...|
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~~~~-~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELAEAP-DSHRKILTYEAPIE 176 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhhcC-CCCcEEEEeCCCce
Confidence 4566999999999999853 34444443321 12334555444334
No 414
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.55 E-value=2 Score=45.62 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
.....+|||||+|.+.... ...+.+.+..-+....+++
T Consensus 119 ~~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred cCCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 3567899999999986432 3344555555444443333
No 415
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.53 E-value=1.4 Score=44.65 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHhcCCc------EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc-----HHHHHHHHHHHH
Q 009477 46 PTPIQRKTMPLILSGAD------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT-----RDLALQTLKFTK 114 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d------~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt-----reLa~Q~~~~~~ 114 (534)
.+..|...+..++..++ +++.|.+|||||.+-. .+..+. +...+++.|- +-|-.++.....
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-----~~l~~~---n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-----QLLRKL---NLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-----HHHhhc---CCcceeeehHHhccHHHHHHHHHHHhc
Confidence 46788888888877654 4899999999998643 222221 2335666652 233333322221
Q ss_pred HhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCC--hHHHHHH
Q 009477 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK 191 (534)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~--~~~~~~~ 191 (534)
.+.. .|...+.....+.. +...+...... ..+.--++|+|-||.+-+++ ....+-+
T Consensus 82 -~~d~---------dg~~~~~~~en~~d-----------~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~ 140 (438)
T KOG2543|consen 82 -LADK---------DGDKVEGDAENFSD-----------FIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFR 140 (438)
T ss_pred -cCCC---------chhhhhhHHHHHHH-----------HHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHH
Confidence 0100 01111111111111 11122110001 11334589999999999886 2334444
Q ss_pred HHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEec
Q 009477 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (534)
Q Consensus 192 i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (534)
....++.+.-.+.+|+++++... ..+.+..++..+.++
T Consensus 141 L~el~~~~~i~iils~~~~e~~y-~~n~g~~~i~~l~fP 178 (438)
T KOG2543|consen 141 LYELLNEPTIVIILSAPSCEKQY-LINTGTLEIVVLHFP 178 (438)
T ss_pred HHHHhCCCceEEEEeccccHHHh-hcccCCCCceEEecC
Confidence 44455556667889999876521 222344445444443
No 416
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.50 E-value=0.33 Score=49.41 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=30.6
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
+..+.+++++|+||||||... -.++..+. ...+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~-----~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIP-----PQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccC-----CCCCEEEECCCcccc
Confidence 445789999999999999843 23333222 245688888888874
No 417
>CHL00176 ftsH cell division protein; Validated
Probab=90.44 E-value=0.77 Score=50.77 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998543
No 418
>PRK13695 putative NTPase; Provisional
Probab=90.43 E-value=1.4 Score=40.07 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998665
No 419
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.43 E-value=0.47 Score=45.70 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
|..+++.|++|+|||...+-.+.+.+. .|.++++++-. +-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-----~ge~~lyvs~e-e~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGIYVALE-EHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEee-CCHHHHHHHHHHhC
Confidence 466999999999999866644444432 36678888843 55666666666654
No 420
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.40 E-value=1 Score=47.81 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 53 ai~~il~-----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
-+..++. |.-+++.|++|+|||...+..+.+ +.. .|.+++++... +-..|+.....+++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~-~a~----~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ-LAK----NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH-HHh----cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 3555554 345889999999999866533332 222 34568998875 44566666555553
No 421
>PRK07004 replicative DNA helicase; Provisional
Probab=90.34 E-value=1.5 Score=46.70 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEE-cCCCHHHHH-
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQF- 137 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~-gg~~~~~~~- 137 (534)
|.-+++.|+||+|||...+--+...... .|..+++++..= =..|+...+- +...++....+. |..+.+++.
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlEM-~~~ql~~R~l--a~~~~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSMEM-PGTQLAMRML--GSVGRLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCCC-CHHHHHHHHH--HhhcCCCHHHHhcCCCCHHHHHH
Confidence 4558899999999998655333322222 356688887532 1233333221 111122222222 222333322
Q ss_pred -----HHHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 138 -----~~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
..+. +..+.|. |+..+.....+... ....+++||||=.+.+..
T Consensus 286 ~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 286 LTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhccC
Confidence 2222 3456553 33334333322110 123578999999988763
No 422
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.30 E-value=1.2 Score=48.03 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=54.3
Q ss_pred EEEEEcChhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-----Cccccc-CCCCCCCE
Q 009477 269 TLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----DVAARG-IDIPLLDN 337 (534)
Q Consensus 269 ~IVF~~t~~~~e~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-----dv~a~G-lDip~v~~ 337 (534)
+||+++|++.|..+++.+... ++.+..++|+.+...+... ++.| .+|+||| |.+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888653 4667899999887766544 4446 9999999 467777 88889998
Q ss_pred EE
Q 009477 338 VI 339 (534)
Q Consensus 338 VI 339 (534)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 87
No 423
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.30 E-value=2.8 Score=41.18 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=18.3
Q ss_pred HHHHHhc-C--CcEEEEcCCCChHHHHH
Q 009477 53 TMPLILS-G--ADVVAMARTGSGKTAAF 77 (534)
Q Consensus 53 ai~~il~-~--~d~i~~a~TGsGKT~~~ 77 (534)
.++.+.. + +++++.|++|||||..+
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLL 128 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHH
Confidence 3454543 2 57899999999999843
No 424
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.18 E-value=1.1 Score=48.07 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 009477 60 GADVVAMARTGSGKTAAF 77 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~ 77 (534)
.+.+++.||+|+|||...
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999853
No 425
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.14 E-value=2.3 Score=43.44 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
..++.||.|+|||....
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 426
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.13 E-value=3 Score=42.00 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.6
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
....+++|||+||.|.... ...+.+++..-| +..+++.|..
T Consensus 122 ~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 3578999999999986543 455666666655 5555555443
No 427
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.07 E-value=1.1 Score=44.31 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.8
Q ss_pred CeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcE-EEEEee
Q 009477 168 SVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQT-LLFSAT 208 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~-ll~SAT 208 (534)
.+.++||||.|.++.-.. ...+...++.+.+..++ +..-+|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 688999999999875432 33444555555544332 333356
No 428
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.00 E-value=0.33 Score=51.90 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=39.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
.++++.|+||||||..+++|.+-. . .+ .++|.=|--||...+....++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~---~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y---PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c---cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999996632 2 22 58999999999888777666654
No 429
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=89.97 E-value=0.84 Score=51.66 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=51.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----C-CCcee-ecCCCCHHHHHHHHHHHhcCCcEEEEEeCc
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----G-LEPSV-CYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~-~~~~~-l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv 325 (534)
++.++++.+||..-+.+.++.|... + ..+.. .||.|+..+++..+++|.+|+.+|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5789999999999888888877654 2 44433 899999999999999999999999999954
No 430
>PRK09087 hypothetical protein; Validated
Probab=89.94 E-value=1.2 Score=42.52 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=24.7
Q ss_pred eEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee-CCHH
Q 009477 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT-LPSA 212 (534)
Q Consensus 170 ~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT-~~~~ 212 (534)
+++++|+.|.+.. -...+-.++..+......++++++ .|+.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 3799999997632 245566677666554334555554 4443
No 431
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.93 E-value=0.75 Score=49.23 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=29.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcC-Cc-EEEEcCCCChHHHHHHHHHHHHh
Q 009477 37 AIKRKGYKVPTPIQRKTMPLILSG-AD-VVAMARTGSGKTAAFLVPMLQRL 85 (534)
Q Consensus 37 ~l~~~g~~~~~~~Q~~ai~~il~~-~d-~i~~a~TGsGKT~~~l~p~l~~l 85 (534)
.+.+.|| .+.|.+.+..+... +. +++.||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3445554 56777777766554 33 789999999999864 3344444
No 432
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.92 E-value=0.23 Score=51.68 Aligned_cols=49 Identities=29% Similarity=0.404 Sum_probs=37.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
++++.|+||||||..+++|-+-. . +..++|+=|--|+...+....+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~----~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W----PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C----CCCEEEEccchhHHHHHHHHHHHcC
Confidence 47899999999999999886543 2 2358999999999987776655543
No 433
>PHA00012 I assembly protein
Probab=89.91 E-value=7.2 Score=39.08 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=34.8
Q ss_pred CCCeeEEEEcCCCccccCC-h----HHHHHHHHHhc-CCCCcEEEEEeeCCHHHHHHHHhcCCCCe
Q 009477 166 LKSVEYVVFDEADCLFGMG-F----AEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPH 225 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~-~----~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~~~~~~l~~~~ 225 (534)
...-+++|+||||..++.. + ...+.+.+... ....-++++|-. |..+...++..+....
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~-ps~VDs~IR~ll~eH~ 143 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQD-ISIMDKQAREALAEHV 143 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCC-HHHHhHHHHHhhhheE
Confidence 3566799999999988532 1 13344433333 334445555555 3567777776665543
No 434
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.83 E-value=1.1 Score=49.03 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQR 84 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~ 84 (534)
..|+.|+.|+|||.+..+.+-..
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc
Confidence 47889999999999876544333
No 435
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.79 E-value=2.9 Score=42.56 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=61.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH-HHHHHHHH---HHHHhhcc-CCCeEEEEEcCCCHHHHHH
Q 009477 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR-DLALQTLK---FTKELGRY-TDLRISLLVGGDSMESQFE 138 (534)
Q Consensus 64 i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr-eLa~Q~~~---~~~~~~~~-~~l~~~~~~gg~~~~~~~~ 138 (534)
++.++.|+|||.+....++..+.... .+..+++. ||. ++...+.. .+..+... ..............
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII----- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE-----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE-----
Confidence 47889999999998877777766542 12456666 555 44444222 33333333 12222211111000
Q ss_pred HHhCCCCEEEECchH--HHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC--CHHHH
Q 009477 139 ELAQNPDIIIATPGR--LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL--PSALA 214 (534)
Q Consensus 139 ~~~~~~~IiV~Tp~~--l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~--~~~~~ 214 (534)
+.++..|.+.+-+. -..-+. =..++++++||+-...+..+...+........ ....+++|.|+ ...+.
T Consensus 73 -~~nG~~i~~~~~~~~~~~~~~~------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 73 -LPNGSRIQFRGADSPDSGDNIR------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFY 144 (384)
T ss_dssp -ETTS-EEEEES-----SHHHHH------TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHH
T ss_pred -ecCceEEEEecccccccccccc------ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCcee
Confidence 03455566665321 111111 14678999999887765444444433333322 22222555543 23344
Q ss_pred HHHHhcCCC
Q 009477 215 EFAKAGLRD 223 (534)
Q Consensus 215 ~~~~~~l~~ 223 (534)
.+......+
T Consensus 145 ~~~~~~~~~ 153 (384)
T PF03237_consen 145 EIFQRNLDD 153 (384)
T ss_dssp HHHHHHHCT
T ss_pred eeeehhhcC
Confidence 444444433
No 436
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.78 E-value=5.8 Score=44.18 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.|.+++|.|+|+..+..+.+.+.+.+ +.+..++|+....+....+ .+..+|+||| +.+. ..+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g----i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~--rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG----IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc----cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc--CCeeeC
Confidence 57889999999999999888887764 7888888876654433222 3568899988 2232 468899
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcC--CCCcEEEEEeeCCHHHH
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSALA 214 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~--~~~q~ll~SAT~~~~~~ 214 (534)
++++||+-+++...-......+.+.+-+.. ....++++--..+..+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQ 558 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHH
Confidence 999998888776433222333433332221 12344555445544433
No 437
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=3.1 Score=45.91 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
+...+++||||+|.+.... ...+.+.+...|.... +++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeE-EEEEeC
Confidence 5678999999999987532 3445556665554443 444444
No 438
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.63 E-value=1.6 Score=46.36 Aligned_cols=108 Identities=18% Similarity=0.312 Sum_probs=77.1
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-----Cccccc-CCCCCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----DVAARG-IDIPLL 335 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-----dv~a~G-lDip~v 335 (534)
+..+||.++|++.+..+...+.+. ++.+.+++|+.+...+...++ ..++|+||| |.+..| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 557999999999999999988775 355889999988776554443 257899999 445444 578888
Q ss_pred CEEE--------EcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHH
Q 009477 336 DNVI--------NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (534)
Q Consensus 336 ~~VI--------~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~ 380 (534)
+++| ..++-......++.++|.-| .-..++..-+.+...+..
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~lA~ 290 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQLAE 290 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHHHH
Confidence 8887 44455567778888888877 234444445666655543
No 439
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=89.63 E-value=1.2 Score=48.49 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=78.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC--CCeEEEEEcCCCHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQFE 138 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~--~l~~~~~~gg~~~~~~~~ 138 (534)
+-.++..|--.|||.... +++..+... ..|.++++.+|.+.-+..+++.+..+.+.. .-.+..+.| +.. - -
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s--~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--~-i 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT--FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--S-F 327 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh--CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--E-E
Confidence 457788888889999655 555544432 147899999999999999999887765432 111111112 111 0 0
Q ss_pred HHhCC--CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 139 ELAQN--PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 139 ~~~~~--~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
...++ ..|.+++- .+.....=.+++++|+|||+.+-+.-+..-+ -.+.. .++++++.|.|-+.
T Consensus 328 ~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 328 SFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred EecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCCC
Confidence 00111 24444421 1111233347899999999987764333333 33322 38899999988544
No 440
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.63 E-value=0.93 Score=47.18 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 569999999999998643
No 441
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.59 E-value=4.6 Score=46.66 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=26.3
Q ss_pred CeeEEEEcCCCccccCChH---HHHHHHHHhcCCCCcEEEEEeeCCHHH
Q 009477 168 SVEYVVFDEADCLFGMGFA---EQLHKILGQLSENRQTLLFSATLPSAL 213 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~---~~~~~i~~~~~~~~q~ll~SAT~~~~~ 213 (534)
.-.+++|||+|.+...|.. .+...++...-....+.+.-||-+++.
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 3468999999998753321 223344433333445666666655544
No 442
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=89.55 E-value=2.2 Score=38.77 Aligned_cols=142 Identities=23% Similarity=0.269 Sum_probs=66.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhC
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~ 142 (534)
+.+.-..|=|||.+++-.++..+. .|.+|+++-=-..- ...-...-+.+..++.+.. .|.........-
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G-----~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~--~g~~f~~~~~~~-- 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAG-----HGMRVLIVQFLKGG--RYSGELKALKKLPNVEIER--FGKGFVWRMNEE-- 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHC-----TT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----GGGH--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh-----CCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEE--cCCcccccCCCc--
Confidence 455666899999998866665544 46788887422220 0001112222222233222 111111000000
Q ss_pred CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHh
Q 009477 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (534)
Q Consensus 143 ~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (534)
..+ .......++...+ .+.-..+++||+||+-...+.++ .+.+.+++...|...-+|+.--.+|+++.+.+..
T Consensus 75 ~~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 75 EED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp HHH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred HHH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 000 0111112222221 23346799999999988877775 5678888888888888888888888888777653
No 443
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=89.45 E-value=1.4 Score=38.48 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=60.4
Q ss_pred eEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEE
Q 009477 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (534)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~i 319 (534)
+..|+..........++.++.+....+.+++|+|++...++.+-+.|-...-....=|+-.+.. ......|
T Consensus 3 ~v~Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV 73 (137)
T PF04364_consen 3 RVDFYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPV 73 (137)
T ss_dssp EEEEEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SE
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeE
Confidence 3455666555556888899999999999999999999999999999977655544445432211 1223579
Q ss_pred EEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccH
Q 009477 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (534)
Q Consensus 320 LI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~ 375 (534)
+|+++... -..+.-+++||.+... ..+..+. ..++-++..++.
T Consensus 74 ~i~~~~~~--~~~~~~~vLinL~~~~--p~~~~~f---------~rvieiv~~~~~ 116 (137)
T PF04364_consen 74 LITWDQEA--NPNNHADVLINLSGEV--PPFFSRF---------ERVIEIVDQDDE 116 (137)
T ss_dssp EEE-TTS------S--SEEEE--SS----GGGGG----------SEEEEEE-SSHH
T ss_pred EEecCccc--CCCCCCCEEEECCCCC--cchhhcc---------cEEEEEecCCHH
Confidence 99987632 1223368899987543 2332222 355777776653
No 444
>PRK10436 hypothetical protein; Provisional
Probab=89.40 E-value=0.69 Score=49.06 Aligned_cols=39 Identities=36% Similarity=0.434 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 009477 47 TPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLN 86 (534)
Q Consensus 47 ~~~Q~~ai~~il~--~~d~i~~a~TGsGKT~~~l~p~l~~l~ 86 (534)
.+.|.+.+..+.. +--+++.||||||||... ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 4556666665544 335889999999999864 34455543
No 445
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.37 E-value=0.28 Score=53.63 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
.++++.||||||||..+++|-+-.+ +..++|+=|--|+...+....++.|
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4699999999999999999977653 2349999999999999888777765
No 446
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.34 E-value=0.31 Score=47.95 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHHHHH-hcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 49 IQRKTMPLI-LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 49 ~Q~~ai~~i-l~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
...+.+... ..+.++++.|+||||||... ..++..+... ..+++++-.+.|+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE----DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT----TSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc----ccceEEeccccce
Confidence 333444433 34678999999999999864 3444444432 3678888877776
No 447
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.33 E-value=0.99 Score=49.37 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=29.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHh
Q 009477 38 IKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRL 85 (534)
Q Consensus 38 l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l 85 (534)
+.+.|| .+.|.+.+..+... --++++||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 445564 46677777655543 34789999999999864 3455554
No 448
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.31 E-value=1.1 Score=50.93 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 488 ~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998544
No 449
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.25 E-value=2.4 Score=47.34 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
....+++||||+|.|.... ...+...+..-|.... +++.+|
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~ti-fILaTt 156 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVI-FILATT 156 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceE-EEEEcC
Confidence 4578899999999977532 3334444444443333 334444
No 450
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.24 E-value=1.1 Score=42.27 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 53 ai~~il~-----~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
.+..++. |.-+++.|++|||||...+-.+.+... .|.+++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-----~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG-----QGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 3555554 345889999999999876644443322 356788884
No 451
>PRK05636 replicative DNA helicase; Provisional
Probab=89.22 E-value=1.8 Score=46.56 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=23.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
.-+++.|+||+|||...+--+...... .|..+++.+.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~----~g~~v~~fSl 302 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK----HNKASVIFSL 302 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEEe
Confidence 347889999999998655333322222 3566888754
No 452
>PF12846 AAA_10: AAA-like domain
Probab=89.22 E-value=0.58 Score=46.34 Aligned_cols=43 Identities=30% Similarity=0.543 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
++++++.|.||||||.... .++..+.. .|..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~----~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR----RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH----cCCCEEEEcCCchHHH
Confidence 3578999999999998766 44444443 3567888877766544
No 453
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=0.77 Score=52.56 Aligned_cols=144 Identities=20% Similarity=0.175 Sum_probs=80.6
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCC-CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKV-PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~-~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
..-+|++.|....++..|+++=+.- ++|-+-.-+ .|-.-+.++.+||.|+|||+..- .+.......+.++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ar-----aLa~~~s~~~~ki--- 330 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMAR-----ALAAACSRGNRKI--- 330 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHH-----hhhhhhccccccc---
Confidence 3558999999999999998874431 233222211 12234679999999999998543 1111111111111
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
..|.+...- --.--|+..+|=+.++.+ ...-.....|.+||.|-
T Consensus 331 --------------sffmrkgaD--------------------~lskwvgEaERqlrllFe--eA~k~qPSIIffdeIdG 374 (1080)
T KOG0732|consen 331 --------------SFFMRKGAD--------------------CLSKWVGEAERQLRLLFE--EAQKTQPSIIFFDEIDG 374 (1080)
T ss_pred --------------chhhhcCch--------------------hhccccCcHHHHHHHHHH--HHhccCceEEecccccc
Confidence 111100000 011234555555555543 23344567899999995
Q ss_pred cccC----------ChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 180 LFGM----------GFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 180 l~~~----------~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
+.-. .....+..++..++...|+++.+||.
T Consensus 375 lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 375 LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 4321 13344555666677889999999995
No 454
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.06 E-value=0.33 Score=45.96 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=25.1
Q ss_pred eEEEEcCCCccc-c----CChHHHHHHHHHhcCC-CCcEEEEEeeC
Q 009477 170 EYVVFDEADCLF-G----MGFAEQLHKILGQLSE-NRQTLLFSATL 209 (534)
Q Consensus 170 ~~iViDEah~l~-~----~~~~~~~~~i~~~~~~-~~q~ll~SAT~ 209 (534)
-+|||||+|.+. . ..+...+..++..... ....+.++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999998 2 2355666666666332 33445566664
No 455
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=0.64 Score=46.79 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=30.3
Q ss_pred CcCCCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 24 GFESLNLSPNVFRAIKRKGYK-VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
+|++.|=-+.+..++++.=.- --+|-.-.--+.+..-+.++++||+|+|||..+-
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 566666555666666543211 1122211111222223679999999999998543
No 456
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.92 E-value=5.8 Score=42.08 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH----Hhc---C-----CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCe
Q 009477 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMPL----ILS---G-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (534)
Q Consensus 27 ~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~----il~---~-----~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~ 94 (534)
.+|.+++-+......|.-.-.|.-.+.+.. +.+ . ..+++.||.|||||+.+. .+...+ .-+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S--~FP 565 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSS--DFP 565 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhc--CCC
Confidence 468888888888888877655555444432 111 1 249999999999998544 222221 245
Q ss_pred EEEEEcCc
Q 009477 95 RALILSPT 102 (534)
Q Consensus 95 ~~Lil~Pt 102 (534)
.+=|++|.
T Consensus 566 FvKiiSpe 573 (744)
T KOG0741|consen 566 FVKIISPE 573 (744)
T ss_pred eEEEeChH
Confidence 57777775
No 457
>PRK08760 replicative DNA helicase; Provisional
Probab=88.91 E-value=2.7 Score=44.98 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEE-cCCCHHHHH-
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQF- 137 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~-gg~~~~~~~- 137 (534)
|.-+++.|+||+|||...+--+...... .|..+++.+..=. ..|+...+..... ++....+. |..+.+++.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~----~g~~V~~fSlEMs-~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK----SKKGVAVFSMEMS-ASQLAMRLISSNG--RINAQRLRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh----cCCceEEEeccCC-HHHHHHHHHHhhC--CCcHHHHhcCCCCHHHHHH
Confidence 3448899999999998655333332222 3566888876422 3344444333221 12211122 222222222
Q ss_pred -----HHHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 138 -----~~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
..+. +..+.|- |++.+...+.+.. .-..+++||||=.+.+.
T Consensus 302 ~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 2222 2445444 2344444333211 12357899999988775
No 458
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.87 E-value=1.4 Score=44.77 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=30.5
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
+..+++++++|+||||||.. +-.++..+. ...+++.+=-+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip-----~~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP-----AIERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC-----CCCeEEEecCCCcccc
Confidence 34578999999999999984 333343332 2457777767777643
No 459
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.86 E-value=3.2 Score=42.07 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEe
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SA 207 (534)
....+++||||+|++.... ...+.+.++.-|+...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999987543 4456666666555555555333
No 460
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.84 E-value=3.4 Score=41.53 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=25.4
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+++||||+|.|.... ...+.+.+..-|+...+++.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 4578899999999986543 445555555544445444443
No 461
>PRK06321 replicative DNA helicase; Provisional
Probab=88.80 E-value=4.6 Score=43.12 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=55.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEE-cCCCHHHHH--
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQF-- 137 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~-gg~~~~~~~-- 137 (534)
.=+++.|++|+|||...+- +...+... .|..+++.+..= =..|+...+-. ...++....+. |..+.+++.
T Consensus 227 ~LiiiaarPgmGKTafal~-ia~~~a~~---~g~~v~~fSLEM-s~~ql~~Rlla--~~s~v~~~~i~~~~l~~~e~~~~ 299 (472)
T PRK06321 227 NLMILAARPAMGKTALALN-IAENFCFQ---NRLPVGIFSLEM-TVDQLIHRIIC--SRSEVESKKISVGDLSGRDFQRI 299 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHHh---cCCeEEEEeccC-CHHHHHHHHHH--hhcCCCHHHhhcCCCCHHHHHHH
Confidence 4478899999999986553 33333211 356688887532 23343333322 12223322222 222223332
Q ss_pred ----HHHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 138 ----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 138 ----~~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
..+. +..+.|- |...+...+.... .-..+++||||=.+.+.
T Consensus 300 ~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 300 VSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcC
Confidence 2222 3346554 3334444333321 12358899999998875
No 462
>PRK05595 replicative DNA helicase; Provisional
Probab=88.75 E-value=2.7 Score=44.56 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
|.-+++.|+||+|||...+--+...... .|.++++++..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~----~g~~vl~fSlE 239 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR----EGKSVAIFSLE 239 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH----cCCcEEEEecC
Confidence 3447889999999998655333322222 36778888875
No 463
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=88.74 E-value=3 Score=36.63 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=28.9
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
..+.+++++||.-.-++......+.+.++.+. . +++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 44678999999998888777777877777662 3 4555444
No 464
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=0.34 Score=47.79 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
..|+++.||||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3579999999999998544
No 465
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.54 E-value=0.85 Score=46.25 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998654
No 466
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.54 E-value=5.3 Score=37.23 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcC-C--CCcEEEEEeeC
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-E--NRQTLLFSATL 209 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~-~--~~q~ll~SAT~ 209 (534)
+.+-+++++||...-++......+.+++.... . ..+++++|.--
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 46788999999999888777777777666542 2 34677776543
No 467
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.13 E-value=1 Score=48.57 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=29.7
Q ss_pred CCCCcCCCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
...+|++++-.+.+...+.+.- +..+..++... ....+.+++.||+|+|||...-
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHHH
Confidence 3557777765555554443210 11121111110 1123569999999999998543
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.08 E-value=1.2 Score=47.71 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 53 TMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 53 ai~~il~~-----~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
.+..++.| .-+++.|++|+|||...+--+.+.+. .|.++++++- -|-..|+...++.++
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-----~ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-----NKERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 45555553 45999999999999865544333322 4667888884 466778777777765
No 469
>PRK09165 replicative DNA helicase; Provisional
Probab=87.99 E-value=3.6 Score=44.24 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=56.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcC----------CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcC
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV----------PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~----------~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg 130 (534)
.-+++.|+||+|||...+--+.+...... ...|..+++++..= =..|+...+-... .++....+..|
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM-s~~ql~~R~la~~--s~v~~~~i~~~ 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM-SAEQLATRILSEQ--SEISSSKIRRG 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC-CHHHHHHHHHHHh--cCCCHHHHhcC
Confidence 44889999999999865543333322211 11367788887642 2344444332221 22322222222
Q ss_pred CCHHHHHHHHh------CCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 131 DSMESQFEELA------QNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 131 ~~~~~~~~~~~------~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
.-.+..+..+. ....+.|- |+..+...+.+.. .-..+++||||=.+.+.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcc
Confidence 22222222111 12345543 2334444443211 12358899999999765
No 470
>PRK14701 reverse gyrase; Provisional
Probab=87.90 E-value=2.7 Score=51.42 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv 325 (534)
++.++||.+||+.-+..+.+.|... ++.+..+||+++..++...++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4679999999999999998888763 456788999999999999999999999999999964
No 471
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.87 E-value=2.9 Score=38.24 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCCeeEEEEcCCCccccCCh--HHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHh
Q 009477 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~--~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (534)
-..+++||+||.--.+..++ .+.+.+++..-|...-+|+..-..|+++.+.+..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 34799999999998776664 5778888888887777777777788888887765
No 472
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.82 E-value=1.4 Score=48.35 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=28.5
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~ 205 (534)
+.+-.++|+|||-.-+|..-...+.+.+..+.+++-++..
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 5666899999999888877777777777665555434443
No 473
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=4.2 Score=40.47 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=64.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHH-----------HHHHHHHHHHHhhccCCCeEEEEE
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRD-----------LALQTLKFTKELGRYTDLRISLLV 128 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~-~g~~~Lil~Ptre-----------La~Q~~~~~~~~~~~~~l~~~~~~ 128 (534)
|-+++.||+|+|||.. .-.+.+++.-+... ..+..||=..... |+.++++.++++....+.-+.++.
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4488999999999964 44555565432221 1223455444444 555666667777777777777766
Q ss_pred cCC---------------CHH---------HHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 129 GGD---------------SME---------SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 129 gg~---------------~~~---------~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
... ..+ .|...++..++|+|-|.+-|.+- ++.-.+|-||-.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s-----------iD~AfVDRADi~~y 323 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS-----------IDVAFVDRADIVFY 323 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH-----------HHHHhhhHhhheee
Confidence 421 111 24556666777777766555533 34456777775543
No 474
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.74 E-value=0.81 Score=42.73 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
+++.||||||||.... .++..+... .+.+++.+--..|+
T Consensus 4 ilI~GptGSGKTTll~-~ll~~~~~~---~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTLA-AMIDYINKN---KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHHH-HHHHHhhhc---CCcEEEEEcCCccc
Confidence 6889999999998643 334443322 23456666655454
No 475
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.32 E-value=2.5 Score=48.28 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+..+++.||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458999999999998544
No 476
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.13 E-value=4.7 Score=41.52 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.++++||.|+|||....
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997654
No 477
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.12 E-value=9 Score=35.97 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=68.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc---CcHHHHHHHHHH----HHHhhccCCCeEEEE--EcCCC
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLKF----TKELGRYTDLRISLL--VGGDS 132 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~---PtreLa~Q~~~~----~~~~~~~~~l~~~~~--~gg~~ 132 (534)
=+++.|+.|+|||...+ ++.......|.++.+++ |+|+...|+... ...|... .+.+..+ .+-..
T Consensus 30 L~lIEGd~~tGKSvLsq-----r~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~~~~~~ 103 (235)
T COG2874 30 LILIEGDNGTGKSVLSQ-----RFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNLEPVNW 103 (235)
T ss_pred EEEEECCCCccHHHHHH-----HHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEeccccccc
Confidence 48999999999998655 44333334577888887 566777775541 2222211 1222221 11111
Q ss_pred HHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHH---HHHHhcCCCCcEEEEEeeC
Q 009477 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH---KILGQLSENRQTLLFSATL 209 (534)
Q Consensus 133 ~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~---~i~~~~~~~~q~ll~SAT~ 209 (534)
...+ ...+++.+.+ .....+-+++|+|-.....-..-...+. ..++.+...-+++++|+-+
T Consensus 104 ~~~~--------------~~~~L~~l~~--~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 104 GRRS--------------ARKLLDLLLE--FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred ChHH--------------HHHHHHHHHh--hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 1111 1223444432 2335567899999888665433222222 3344555677899999875
No 478
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=87.07 E-value=5.6 Score=34.94 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=64.4
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 009477 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (534)
Q Consensus 241 ~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iL 320 (534)
..|+......+...++.++.+....+.+++|.|++...++.+-+.|=...-....=|+-.... ......|+
T Consensus 4 v~FY~l~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~ 74 (142)
T PRK05728 4 ADFYHLTLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVL 74 (142)
T ss_pred EEEEecCchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEE
Confidence 445555667788889999999999999999999999999999999977655555555532211 12356889
Q ss_pred EE-eCcccccCCCCCCCEEEEcCC
Q 009477 321 IV-TDVAARGIDIPLLDNVINWDF 343 (534)
Q Consensus 321 I~-Tdv~a~GlDip~v~~VI~~~~ 343 (534)
|+ ++. -+.+.-+++||.+.
T Consensus 75 l~~~~~----~~~~~~~~LinL~~ 94 (142)
T PRK05728 75 LTWPGK----RNANHRDLLINLDG 94 (142)
T ss_pred EEcCCC----CCCCCCcEEEECCC
Confidence 87 321 24455678898874
No 479
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=2.1 Score=44.44 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCeeEEEEcCCCccccCC--------hHHHHHHH----HHhcCCCCcEEEEEee-CCHHHHHHHHhcCC
Q 009477 167 KSVEYVVFDEADCLFGMG--------FAEQLHKI----LGQLSENRQTLLFSAT-LPSALAEFAKAGLR 222 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~--------~~~~~~~i----~~~~~~~~q~ll~SAT-~~~~~~~~~~~~l~ 222 (534)
....+|++||+|.++... .......+ ......+-++++++|| +|-++.+-++..+.
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~ 312 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV 312 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh
Confidence 356778899999887321 11111111 1222344578888888 46666666555443
No 480
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.01 E-value=3.9 Score=44.66 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.1
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPM 81 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~ 81 (534)
-.++.|+.|+|||.++.+.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999766433
No 481
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.99 E-value=1.2 Score=48.31 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=25.6
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
+.+-+++|+||+-.-+|..-...+.+.+....+++-++.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 567778888988877776666666666665544443333
No 482
>PHA02542 41 41 helicase; Provisional
Probab=86.85 E-value=1.8 Score=46.08 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=24.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
-+++.|++|.|||...+--+.... ..|..+++++-
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a-----~~g~~Vl~fSL 226 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYL-----QQGYNVLYISM 226 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEEec
Confidence 478899999999987664443332 24667888873
No 483
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.84 E-value=1.8 Score=44.02 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=41.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 009477 35 FRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (534)
Q Consensus 35 ~~~l~~~g~~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa 106 (534)
+..+.+.|+ +++.+.+.+..+.. +.++++.|+||||||...- .++..+. ...+++++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i~-----~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALVA-----PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccCC-----CCCcEEEECCcceec
Confidence 445556665 35677777765544 6789999999999998432 2222221 235678888777873
No 484
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=86.70 E-value=1.7 Score=48.66 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
.+++.|++|+... ...+++.|..|||||.+..--+...+...... -.++|.++=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~-p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVD-PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcC-hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5899999999765 55688999999999998765555555443222 23599999999999999988888664
No 485
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.60 E-value=1.9 Score=49.56 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVP 80 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p 80 (534)
+++++.|++|+|||...-..
T Consensus 201 ~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 57999999999999876433
No 486
>PHA00350 putative assembly protein
Probab=86.56 E-value=1.7 Score=44.96 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLV 79 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~ 79 (534)
.++.|..|||||+..+-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47899999999987664
No 487
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.34 E-value=2.3 Score=40.91 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=60.4
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCC----cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCC-CCCCcc
Q 009477 290 GLEPSVCYGDMDQDARKIHVSRFRARK----TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA-RAGRTG 364 (534)
Q Consensus 290 ~~~~~~l~g~~~~~~r~~~~~~F~~g~----~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~g-R~g~~G 364 (534)
++.+..++++.+.+. -.|.++. ..|+|+=+.++||+.++++.......-+...+++.|+.---| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455555555443322 2233333 789999999999999999999988888888888888765444 666667
Q ss_pred eEEEEeccccHHHHHHH
Q 009477 365 TAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 365 ~~i~~~~~~e~~~~~~l 381 (534)
.|-.+.+++-...+..+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 88777776655555444
No 488
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.33 E-value=0.98 Score=41.41 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCC-CcEEEEEee
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSAT 208 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~-~q~ll~SAT 208 (534)
+.+.+++++||...-++......+.+.+..+... .++++.|--
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567899999999988877777776776665333 556665544
No 489
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.31 E-value=0.57 Score=51.96 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=39.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
.++++.|+||||||..+++|-+-.+ +..++|+=|--|+...+....+..+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4799999999999999999965542 1248888898888888777666654
No 490
>PRK09354 recA recombinase A; Provisional
Probab=86.28 E-value=2.7 Score=42.79 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 53 ai~~il~------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
.+..++. |+-+.+.|++|||||...+..+.+... .|..++++.....+-..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHHH
Confidence 4555565 345889999999999877655444332 36678999887776653
No 491
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.21 E-value=4 Score=44.80 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=56.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.|+|+..+.++++.+... ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a--rGIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA--RGLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh--cCCCcc
Confidence 4668999999999999988888765 47899999987766554433 24789999993 333 368889
Q ss_pred CeeEEEEcCC
Q 009477 168 SVEYVVFDEA 177 (534)
Q Consensus 168 ~~~~iViDEa 177 (534)
++++||.-+.
T Consensus 325 ~V~~VInyd~ 334 (572)
T PRK04537 325 GVKYVYNYDL 334 (572)
T ss_pred CCCEEEEcCC
Confidence 9998886543
No 492
>PRK04328 hypothetical protein; Provisional
Probab=86.16 E-value=1.3 Score=43.01 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
|.-+++.|++|+|||...+--+.+.+. .|.++++++ +.+-..++.+.++.++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~-----~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 456889999999999865544444332 356677777 3344555666666654
No 493
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.06 E-value=4.1 Score=47.00 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.+.++.|++|+|||...-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999998654
No 494
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.88 E-value=1.3 Score=42.02 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTR 103 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-~~~g~~~Lil~Ptr 103 (534)
|.-+.+.|++|+|||...+..+...+.... ...+..++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 455889999999999876644433322210 00125678887654
No 495
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.82 E-value=0.89 Score=47.26 Aligned_cols=46 Identities=28% Similarity=0.521 Sum_probs=31.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
...+++++.|.||||||.+ +.+++..+... |.+++|.=|.-+....
T Consensus 13 ~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~----g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQA-IRHLLDQIRAR----GDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT----T-EEEEEEETTHHHHH
T ss_pred hhhCcEEEECCCCCCHHHH-HHHHHHHHHHc----CCEEEEEECCchHHHH
Confidence 4567899999999999974 55666666543 6778998898776443
No 496
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.74 E-value=24 Score=37.92 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh----CC
Q 009477 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QN 143 (534)
Q Consensus 68 ~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~ 143 (534)
-.+.||+..-++.+.+.+... -.+.+||.+-+.+=|.|++..+. .+.++.+..++|..+..+..+.+. +.
T Consensus 365 lvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred heeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 347777777777777776655 34679999999999999887765 456899999999877665544433 46
Q ss_pred CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 144 ~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
..++||| +++.+ .+++.++.+||-+..-.
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCCc
Confidence 7899998 55553 58999999999976643
No 497
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.55 E-value=3 Score=44.88 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCCeeEEEEcCCCccccC-------ChHHHHHHHHHh---cCCCCcEEEEEeeCCHH
Q 009477 166 LKSVEYVVFDEADCLFGM-------GFAEQLHKILGQ---LSENRQTLLFSATLPSA 212 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~-------~~~~~~~~i~~~---~~~~~q~ll~SAT~~~~ 212 (534)
-+..++|.|||.|.+... .-...+..++.. +....++..+-||--++
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 456789999999987632 122334444433 44567788889995444
No 498
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.50 E-value=4.5 Score=46.60 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHh----c--CCcEEEEcCCCChHHHHHH
Q 009477 46 PTPIQRKTMPLIL----S--GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 46 ~~~~Q~~ai~~il----~--~~d~i~~a~TGsGKT~~~l 78 (534)
|---|.+-+..+. . ..+.++.|+.|+|||...-
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 3333665565543 2 2579999999999998653
No 499
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=85.38 E-value=7.1 Score=34.78 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=66.3
Q ss_pred eEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEE
Q 009477 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (534)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~i 319 (534)
+..|+.+....+...+++++.+.+..+.+++|.|++...++.|-+.|=...-....=|+...... .....|
T Consensus 3 ~v~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV 73 (154)
T PRK06646 3 QFSIYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPI 73 (154)
T ss_pred eeEEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCE
Confidence 45677778888999999999999999999999999999999999999766555555565422111 235679
Q ss_pred EEEeCcccccCCCCCCCEEEEcCC
Q 009477 320 LIVTDVAARGIDIPLLDNVINWDF 343 (534)
Q Consensus 320 LI~Tdv~a~GlDip~v~~VI~~~~ 343 (534)
+|+++. . +.+.-+.+||.+.
T Consensus 74 ~L~~~~--~--~p~~~~vLiNL~~ 93 (154)
T PRK06646 74 YITDEL--Q--NPNNASVLVIISP 93 (154)
T ss_pred EEecCC--C--CCCCCCEEEECCC
Confidence 988542 1 2225567888875
No 500
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=85.28 E-value=4.6 Score=38.78 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhh-------cCCCCCeEEEEEcCc
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQ-------HVPQGGVRALILSPT 102 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~-------~~~~~g~~~Lil~Pt 102 (534)
.++.|+.|+|||...+-.++.-... .....+.+|+|+.-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 6889999999998766544432211 111235579999843
Done!