Query 009477
Match_columns 534
No_of_seqs 397 out of 3084
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.8E-64 2E-68 527.7 44.6 369 20-392 53-427 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 3E-60 1E-64 495.8 40.9 368 22-394 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 8.8E-60 3E-64 493.0 41.0 369 20-390 12-400 (417)
4 1s2m_A Putative ATP-dependent 100.0 6.9E-58 2.4E-62 476.2 42.5 370 19-394 17-386 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2.9E-58 1E-62 480.9 36.8 369 22-395 39-409 (414)
6 1xti_A Probable ATP-dependent 100.0 1.4E-56 4.8E-61 464.6 41.6 369 22-395 7-380 (391)
7 1hv8_A Putative ATP-dependent 100.0 3E-56 1E-60 457.4 42.0 360 21-392 4-364 (367)
8 3fht_A ATP-dependent RNA helic 100.0 1.9E-56 6.4E-61 466.7 40.1 366 21-393 23-400 (412)
9 3pey_A ATP-dependent RNA helic 100.0 1.1E-55 3.8E-60 457.8 42.1 363 22-393 4-378 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 4.3E-56 1.5E-60 484.6 38.1 371 20-390 14-415 (579)
11 3fmp_B ATP-dependent RNA helic 100.0 5.1E-58 1.7E-62 488.9 18.7 364 22-392 91-466 (479)
12 1fuu_A Yeast initiation factor 100.0 2E-57 6.8E-62 471.2 21.6 369 19-393 17-386 (394)
13 3i5x_A ATP-dependent RNA helic 100.0 2.8E-55 9.4E-60 477.2 38.2 368 23-390 68-466 (563)
14 2z0m_A 337AA long hypothetical 100.0 7.4E-53 2.5E-57 427.3 35.6 335 30-386 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 9.6E-53 3.3E-57 450.7 20.1 362 24-394 120-492 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 2.1E-50 7.3E-55 437.5 34.5 342 24-381 22-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-49 3.7E-54 427.5 35.6 338 23-381 2-351 (523)
18 3oiy_A Reverse gyrase helicase 100.0 6.6E-51 2.3E-55 425.9 25.1 325 34-386 10-376 (414)
19 1tf5_A Preprotein translocase 100.0 3.9E-48 1.3E-52 420.9 31.1 324 40-375 79-547 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 5.4E-47 1.9E-51 410.7 30.4 334 41-377 3-512 (556)
21 4ddu_A Reverse gyrase; topoiso 100.0 7E-47 2.4E-51 434.4 27.7 321 40-386 74-503 (1104)
22 3tbk_A RIG-I helicase domain; 100.0 2.9E-46 9.8E-51 404.6 30.3 333 45-381 4-515 (555)
23 2va8_A SSO2462, SKI2-type heli 100.0 1E-45 3.4E-50 412.7 33.3 338 21-374 6-409 (715)
24 2ykg_A Probable ATP-dependent 100.0 7.6E-47 2.6E-51 420.9 23.6 343 35-380 3-523 (696)
25 2fsf_A Preprotein translocase 100.0 5.5E-46 1.9E-50 402.9 28.6 341 20-374 47-584 (853)
26 2zj8_A DNA helicase, putative 100.0 1.8E-46 6.1E-51 418.8 25.0 336 23-377 1-391 (720)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.2E-45 7.4E-50 414.1 31.1 335 40-377 243-753 (797)
28 3l9o_A ATP-dependent RNA helic 100.0 7.8E-46 2.7E-50 425.8 26.9 331 23-374 162-598 (1108)
29 2p6r_A Afuhel308 helicase; pro 100.0 6.2E-46 2.1E-50 413.2 22.8 334 23-376 1-391 (702)
30 1nkt_A Preprotein translocase 100.0 1.8E-44 6.3E-49 391.2 33.3 324 40-375 107-619 (922)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 4.5E-46 1.5E-50 427.8 20.6 336 24-387 31-468 (1054)
32 1wp9_A ATP-dependent RNA helic 100.0 1.3E-43 4.5E-48 376.2 33.3 324 45-376 9-478 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 4.6E-44 1.6E-48 407.8 29.6 334 40-376 243-752 (936)
34 2xgj_A ATP-dependent RNA helic 100.0 9.7E-43 3.3E-47 396.9 36.0 322 38-381 80-508 (1010)
35 1gm5_A RECG; helicase, replica 100.0 1.3E-43 4.3E-48 392.5 25.0 328 32-381 356-705 (780)
36 2eyq_A TRCF, transcription-rep 100.0 3.7E-41 1.3E-45 389.2 37.5 325 27-374 585-923 (1151)
37 4gl2_A Interferon-induced heli 100.0 1.6E-43 5.6E-48 394.2 16.7 324 45-373 7-518 (699)
38 4a4z_A Antiviral helicase SKI2 100.0 2.4E-41 8.4E-46 385.4 30.3 311 40-371 35-490 (997)
39 2whx_A Serine protease/ntpase/ 100.0 5.1E-44 1.7E-48 388.7 7.6 318 24-385 150-493 (618)
40 2xau_A PRE-mRNA-splicing facto 100.0 4.8E-41 1.6E-45 374.1 27.1 337 20-375 69-445 (773)
41 2oca_A DAR protein, ATP-depend 100.0 3.3E-42 1.1E-46 369.7 17.2 313 44-371 112-453 (510)
42 2jlq_A Serine protease subunit 100.0 5E-42 1.7E-46 361.9 15.1 287 42-372 1-310 (451)
43 4f92_B U5 small nuclear ribonu 100.0 9.7E-40 3.3E-44 387.6 34.1 347 30-389 911-1321(1724)
44 2fwr_A DNA repair protein RAD2 100.0 1.5E-40 5E-45 353.5 17.3 293 45-374 93-455 (472)
45 4f92_B U5 small nuclear ribonu 100.0 3.6E-39 1.2E-43 382.7 27.4 334 42-381 76-481 (1724)
46 3o8b_A HCV NS3 protease/helica 100.0 1.1E-40 3.6E-45 359.8 12.7 279 45-377 217-518 (666)
47 1yks_A Genome polyprotein [con 100.0 2E-41 6.8E-46 355.9 4.7 280 56-385 4-314 (440)
48 2wv9_A Flavivirin protease NS2 100.0 6.3E-41 2.2E-45 366.7 7.8 306 37-385 202-548 (673)
49 3fe2_A Probable ATP-dependent 100.0 1.4E-37 4.8E-42 301.0 24.2 212 20-232 26-240 (242)
50 2z83_A Helicase/nucleoside tri 100.0 2.2E-39 7.4E-44 342.4 12.3 272 55-373 16-313 (459)
51 2v6i_A RNA helicase; membrane, 100.0 1.1E-37 3.9E-42 326.6 19.9 270 59-371 1-289 (431)
52 1vec_A ATP-dependent RNA helic 100.0 1.9E-36 6.4E-41 285.5 24.4 203 22-227 2-205 (206)
53 3ber_A Probable ATP-dependent 100.0 1.6E-36 5.4E-41 294.8 24.2 206 22-229 42-247 (249)
54 3fmo_B ATP-dependent RNA helic 100.0 8.5E-37 2.9E-41 304.6 20.6 205 22-231 91-299 (300)
55 3iuy_A Probable ATP-dependent 100.0 6.3E-37 2.1E-41 293.6 18.3 209 18-228 14-227 (228)
56 1wrb_A DJVLGB; RNA helicase, D 100.0 8.5E-37 2.9E-41 297.5 19.3 220 21-241 21-251 (253)
57 3h1t_A Type I site-specific re 100.0 2.8E-36 9.4E-41 329.3 24.9 301 45-362 178-545 (590)
58 2pl3_A Probable ATP-dependent 100.0 7.6E-36 2.6E-40 287.6 24.0 209 22-231 24-234 (236)
59 1q0u_A Bstdead; DEAD protein, 100.0 1.6E-36 5.4E-41 289.0 18.8 206 23-231 4-213 (219)
60 2oxc_A Probable ATP-dependent 100.0 6.6E-36 2.3E-40 287.0 22.8 206 20-229 21-228 (230)
61 3bor_A Human initiation factor 100.0 3.3E-36 1.1E-40 290.5 20.7 208 20-230 27-235 (237)
62 3ly5_A ATP-dependent RNA helic 100.0 5.1E-36 1.7E-40 293.5 21.1 205 22-226 51-259 (262)
63 3jux_A Protein translocase sub 100.0 8.2E-34 2.8E-38 301.7 37.4 319 41-374 72-588 (822)
64 2gxq_A Heat resistant RNA depe 100.0 2.9E-35 9.8E-40 277.5 22.9 203 24-229 2-205 (207)
65 1qde_A EIF4A, translation init 100.0 2.1E-35 7E-40 282.2 21.6 210 19-232 10-219 (224)
66 3dmq_A RNA polymerase-associat 100.0 1.8E-35 6.2E-40 337.5 23.6 318 44-371 152-611 (968)
67 3rc3_A ATP-dependent RNA helic 100.0 9.8E-36 3.4E-40 324.7 19.6 312 31-390 130-461 (677)
68 1t6n_A Probable ATP-dependent 100.0 6.5E-35 2.2E-39 278.0 22.3 206 20-228 11-219 (220)
69 1z63_A Helicase of the SNF2/RA 100.0 6.3E-34 2.2E-38 304.6 25.9 312 45-375 37-455 (500)
70 3dkp_A Probable ATP-dependent 100.0 2E-34 6.9E-39 279.3 17.4 212 20-232 22-243 (245)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.9E-33 1.7E-37 315.5 23.3 314 44-372 270-708 (1038)
72 3mwy_W Chromo domain-containin 100.0 1.9E-30 6.6E-35 291.7 29.3 320 45-375 236-686 (800)
73 2ipc_A Preprotein translocase 100.0 5.1E-29 1.7E-33 269.5 38.6 319 41-374 76-699 (997)
74 1z3i_X Similar to RAD54-like; 100.0 9.6E-30 3.3E-34 279.3 32.4 322 45-374 55-529 (644)
75 1c4o_A DNA nucleotide excision 100.0 8.3E-29 2.8E-33 271.8 27.3 176 198-382 379-559 (664)
76 2d7d_A Uvrabc system protein B 100.0 1.2E-27 4.1E-32 262.4 27.9 174 198-380 385-563 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 1.3E-27 4.6E-32 216.4 20.8 155 235-391 6-160 (163)
78 2p6n_A ATP-dependent RNA helic 100.0 3.9E-28 1.3E-32 225.6 16.8 171 217-390 8-179 (191)
79 1fuk_A Eukaryotic initiation f 100.0 4.9E-27 1.7E-31 213.1 19.8 154 238-393 3-157 (165)
80 3eaq_A Heat resistant RNA depe 99.9 2.5E-26 8.5E-31 217.2 23.4 158 239-398 6-165 (212)
81 2rb4_A ATP-dependent RNA helic 99.9 5.4E-27 1.8E-31 215.1 18.0 157 235-393 4-167 (175)
82 1t5i_A C_terminal domain of A 99.9 5.3E-27 1.8E-31 214.4 17.1 157 237-395 4-161 (172)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 7.7E-27 2.6E-31 215.8 17.0 160 231-391 12-171 (185)
84 3i32_A Heat resistant RNA depe 99.9 8.1E-26 2.8E-30 224.0 23.8 160 238-399 2-163 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.1E-26 3.6E-31 212.0 0.0 152 238-391 3-155 (170)
86 3b6e_A Interferon-induced heli 99.9 1.3E-24 4.3E-29 205.6 12.4 168 40-208 28-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 2.6E-23 8.7E-28 223.6 22.3 302 41-373 4-521 (540)
88 3llm_A ATP-dependent RNA helic 99.9 1.3E-23 4.5E-28 201.9 15.3 181 32-224 48-231 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 8.5E-22 2.9E-26 212.5 29.6 313 42-373 1-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 2.3E-22 7.9E-27 198.6 11.1 154 45-213 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 3.2E-19 1.1E-23 171.3 17.3 138 45-212 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 7.8E-19 2.7E-23 191.0 22.5 317 45-372 3-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.2E-18 4.1E-23 170.4 13.3 129 247-375 93-226 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 2.7E-09 9.1E-14 115.9 12.2 146 47-208 151-298 (608)
95 2xzl_A ATP-dependent helicase 98.4 4.1E-05 1.4E-09 85.3 25.4 71 43-117 358-428 (802)
96 4b3f_X DNA-binding protein smu 98.4 2.7E-05 9.2E-10 85.2 22.2 68 45-117 189-257 (646)
97 3lfu_A DNA helicase II; SF1 he 98.3 4.2E-05 1.4E-09 83.7 22.3 81 44-127 8-90 (647)
98 2gk6_A Regulator of nonsense t 98.2 1.2E-05 4.1E-10 87.5 14.3 70 43-116 178-247 (624)
99 3e1s_A Exodeoxyribonuclease V, 98.1 7.3E-06 2.5E-10 88.0 11.1 125 45-206 189-313 (574)
100 3upu_A ATP-dependent DNA helic 98.1 9.8E-06 3.3E-10 84.9 11.7 138 37-206 17-162 (459)
101 2wjy_A Regulator of nonsense t 98.1 2.6E-05 8.9E-10 86.8 13.9 70 43-116 354-423 (800)
102 3hgt_A HDA1 complex subunit 3; 97.7 0.00042 1.5E-08 67.9 13.0 125 248-377 107-241 (328)
103 1pjr_A PCRA; DNA repair, DNA r 97.6 0.0044 1.5E-07 68.4 21.4 83 44-129 10-94 (724)
104 2o0j_A Terminase, DNA packagin 97.3 0.0015 5.1E-08 66.1 11.5 71 45-118 163-233 (385)
105 3cpe_A Terminase, DNA packagin 97.0 0.0062 2.1E-07 65.6 14.0 146 45-211 163-315 (592)
106 3ec2_A DNA replication protein 96.8 0.0066 2.3E-07 54.3 10.5 32 47-78 16-56 (180)
107 3vkw_A Replicase large subunit 96.7 0.0022 7.5E-08 65.8 7.1 106 63-208 164-269 (446)
108 2orw_A Thymidine kinase; TMTK, 96.7 0.0006 2.1E-08 61.8 2.2 40 59-103 2-41 (184)
109 2kjq_A DNAA-related protein; s 96.4 0.0013 4.4E-08 57.3 2.7 20 59-78 35-54 (149)
110 1uaa_A REP helicase, protein ( 96.4 0.0041 1.4E-07 68.2 7.1 82 45-129 2-86 (673)
111 3kl4_A SRP54, signal recogniti 96.4 0.0096 3.3E-07 61.1 9.1 129 62-219 99-233 (433)
112 2b8t_A Thymidine kinase; deoxy 96.3 0.0038 1.3E-07 58.2 5.5 91 60-181 12-102 (223)
113 1xx6_A Thymidine kinase; NESG, 96.2 0.0026 9.1E-08 57.8 3.3 39 60-103 8-46 (191)
114 2j9r_A Thymidine kinase; TK1, 95.9 0.0029 9.8E-08 58.3 2.5 40 60-104 28-67 (214)
115 1l8q_A Chromosomal replication 95.9 0.03 1E-06 55.1 10.1 37 60-101 37-73 (324)
116 3u4q_A ATP-dependent helicase/ 95.9 0.012 4.3E-07 68.8 8.0 69 45-115 10-79 (1232)
117 3te6_A Regulatory protein SIR3 95.8 0.09 3.1E-06 51.6 12.9 27 60-87 45-71 (318)
118 2w58_A DNAI, primosome compone 95.6 0.033 1.1E-06 50.6 8.3 18 61-78 55-72 (202)
119 3n70_A Transport activator; si 95.6 0.037 1.3E-06 47.5 8.2 21 58-78 22-42 (145)
120 1d2n_A N-ethylmaleimide-sensit 95.5 0.065 2.2E-06 51.2 10.5 18 61-78 65-82 (272)
121 1a5t_A Delta prime, HOLB; zinc 95.5 0.031 1.1E-06 55.4 8.4 35 46-80 3-44 (334)
122 3dm5_A SRP54, signal recogniti 95.5 0.032 1.1E-06 57.3 8.4 129 62-219 102-234 (443)
123 2z4s_A Chromosomal replication 95.4 0.058 2E-06 55.7 10.3 41 168-208 194-236 (440)
124 1gm5_A RECG; helicase, replica 95.4 0.041 1.4E-06 60.9 9.4 81 263-343 414-499 (780)
125 3u61_B DNA polymerase accessor 95.2 0.091 3.1E-06 51.5 10.7 40 167-206 104-143 (324)
126 2orv_A Thymidine kinase; TP4A 95.2 0.019 6.5E-07 53.4 5.1 39 60-103 19-57 (234)
127 2v1u_A Cell division control p 95.2 0.037 1.3E-06 55.5 7.8 29 168-196 130-159 (387)
128 2zpa_A Uncharacterized protein 95.1 0.03 1E-06 60.3 7.0 112 45-209 175-288 (671)
129 1w4r_A Thymidine kinase; type 95.0 0.022 7.6E-07 51.5 4.9 38 60-102 20-57 (195)
130 2chg_A Replication factor C sm 94.8 0.2 6.8E-06 45.4 11.1 40 167-207 101-140 (226)
131 2p65_A Hypothetical protein PF 94.8 0.21 7.2E-06 43.9 10.9 19 60-78 43-61 (187)
132 3co5_A Putative two-component 94.7 0.1 3.4E-06 44.6 8.1 21 57-77 24-44 (143)
133 1jbk_A CLPB protein; beta barr 94.7 0.92 3.1E-05 39.7 14.9 19 60-78 43-61 (195)
134 3h4m_A Proteasome-activating n 94.5 0.11 3.9E-06 49.7 9.0 57 19-78 10-69 (285)
135 2qgz_A Helicase loader, putati 94.4 0.022 7.4E-07 55.9 3.6 19 60-78 152-170 (308)
136 1fnn_A CDC6P, cell division co 94.4 0.049 1.7E-06 54.8 6.3 17 62-78 46-62 (389)
137 1g5t_A COB(I)alamin adenosyltr 94.4 0.13 4.4E-06 46.5 8.4 133 61-218 29-172 (196)
138 3syl_A Protein CBBX; photosynt 94.4 0.1 3.5E-06 50.7 8.5 18 61-78 68-85 (309)
139 3e2i_A Thymidine kinase; Zn-bi 94.2 0.021 7.1E-07 52.5 2.7 98 60-193 28-125 (219)
140 4b4t_J 26S protease regulatory 94.2 0.38 1.3E-05 48.6 12.2 57 19-78 141-200 (405)
141 4b4t_M 26S protease regulatory 94.2 0.21 7.3E-06 51.1 10.4 57 19-78 174-233 (434)
142 3bos_A Putative DNA replicatio 94.2 0.084 2.9E-06 48.9 7.0 20 59-78 51-70 (242)
143 2qby_B CDC6 homolog 3, cell di 94.1 0.092 3.2E-06 52.6 7.6 18 61-78 46-63 (384)
144 1sxj_E Activator 1 40 kDa subu 94.1 0.1 3.6E-06 51.7 7.9 42 167-209 133-174 (354)
145 3oiy_A Reverse gyrase helicase 93.6 0.24 8.2E-06 50.2 9.7 80 263-342 61-147 (414)
146 2qby_A CDC6 homolog 1, cell di 93.5 0.36 1.2E-05 48.0 10.7 19 60-78 45-63 (386)
147 3cf0_A Transitional endoplasmi 93.1 0.24 8.2E-06 48.1 8.4 56 20-78 9-67 (301)
148 3eie_A Vacuolar protein sortin 93.0 0.19 6.4E-06 49.4 7.5 53 20-78 12-69 (322)
149 3pfi_A Holliday junction ATP-d 93.0 0.28 9.7E-06 48.2 8.8 18 61-78 56-73 (338)
150 2q6t_A DNAB replication FORK h 92.8 0.23 8E-06 51.1 8.3 114 60-183 200-325 (444)
151 2p6n_A ATP-dependent RNA helic 92.8 0.59 2E-05 42.0 10.0 73 93-176 54-130 (191)
152 1njg_A DNA polymerase III subu 92.8 0.9 3.1E-05 41.4 11.7 17 62-78 47-63 (250)
153 1iqp_A RFCS; clamp loader, ext 92.7 0.32 1.1E-05 47.3 8.7 39 167-206 109-147 (327)
154 1xwi_A SKD1 protein; VPS4B, AA 92.6 0.3 1E-05 48.0 8.3 53 20-78 6-63 (322)
155 2r6a_A DNAB helicase, replicat 92.6 0.38 1.3E-05 49.7 9.5 39 60-102 203-241 (454)
156 4b4t_L 26S protease subunit RP 92.5 0.61 2.1E-05 47.7 10.6 56 20-78 175-233 (437)
157 4b4t_H 26S protease regulatory 92.4 1.2 4.2E-05 45.7 12.6 56 20-78 203-261 (467)
158 2hjv_A ATP-dependent RNA helic 92.3 1.3 4.6E-05 38.3 11.5 74 93-177 35-112 (163)
159 3vfd_A Spastin; ATPase, microt 92.3 0.37 1.3E-05 48.6 8.8 19 60-78 148-166 (389)
160 1sxj_D Activator 1 41 kDa subu 92.3 0.2 6.7E-06 49.5 6.6 39 167-206 132-170 (353)
161 2gno_A DNA polymerase III, gam 92.2 0.32 1.1E-05 47.3 7.9 39 166-205 80-118 (305)
162 3hjh_A Transcription-repair-co 92.2 0.5 1.7E-05 49.1 9.7 87 59-156 13-115 (483)
163 2qz4_A Paraplegin; AAA+, SPG7, 92.1 1.1 3.7E-05 42.0 11.4 53 23-78 3-57 (262)
164 4ddu_A Reverse gyrase; topoiso 92.0 0.3 1E-05 56.2 8.6 91 251-342 106-204 (1104)
165 2eyq_A TRCF, transcription-rep 92.0 0.4 1.4E-05 55.6 9.5 77 263-339 649-730 (1151)
166 2l8b_A Protein TRAI, DNA helic 91.9 0.27 9.1E-06 43.7 6.2 135 46-222 35-176 (189)
167 4b4t_I 26S protease regulatory 91.9 1.4 4.8E-05 44.7 12.2 56 20-78 176-234 (437)
168 4b4t_K 26S protease regulatory 91.8 0.82 2.8E-05 46.6 10.6 57 19-78 165-224 (428)
169 1sxj_B Activator 1 37 kDa subu 91.7 0.25 8.6E-06 48.0 6.6 38 168-206 107-144 (323)
170 3b9p_A CG5977-PA, isoform A; A 91.6 0.31 1.1E-05 46.9 7.0 55 21-78 16-72 (297)
171 2dr3_A UPF0273 protein PH0284; 91.5 0.45 1.5E-05 44.1 7.8 52 59-116 22-73 (247)
172 3pvs_A Replication-associated 91.4 0.21 7.1E-06 51.6 5.8 18 61-78 51-68 (447)
173 2qp9_X Vacuolar protein sortin 91.3 0.4 1.4E-05 47.8 7.6 18 61-78 85-102 (355)
174 2rb4_A ATP-dependent RNA helic 91.3 0.71 2.4E-05 40.6 8.6 73 93-176 34-110 (175)
175 1fuk_A Eukaryotic initiation f 91.1 0.72 2.5E-05 40.1 8.3 74 93-177 30-107 (165)
176 1sxj_A Activator 1 95 kDa subu 91.0 0.53 1.8E-05 49.5 8.6 41 167-209 147-189 (516)
177 3uk6_A RUVB-like 2; hexameric 90.8 1.5 5.2E-05 43.4 11.4 18 61-78 71-88 (368)
178 1w5s_A Origin recognition comp 90.5 1 3.4E-05 45.3 9.9 18 61-78 51-70 (412)
179 2zan_A Vacuolar protein sortin 90.3 0.65 2.2E-05 47.8 8.3 18 61-78 168-185 (444)
180 2cvh_A DNA repair and recombin 90.3 0.77 2.6E-05 41.6 8.1 34 60-101 20-53 (220)
181 1sxj_C Activator 1 40 kDa subu 90.2 0.86 2.9E-05 44.9 8.8 38 167-205 109-146 (340)
182 3eaq_A Heat resistant RNA depe 90.2 2.6 8.9E-05 38.3 11.5 71 93-174 31-105 (212)
183 1t5i_A C_terminal domain of A 89.7 0.85 2.9E-05 40.1 7.5 74 93-177 31-108 (172)
184 1hqc_A RUVB; extended AAA-ATPa 89.6 0.86 3E-05 44.2 8.3 19 60-78 38-56 (324)
185 2w0m_A SSO2452; RECA, SSPF, un 89.6 1 3.5E-05 41.1 8.4 20 59-78 22-41 (235)
186 1jr3_A DNA polymerase III subu 89.4 1.9 6.6E-05 42.5 10.9 38 166-204 117-154 (373)
187 2z43_A DNA repair and recombin 89.2 1.4 4.7E-05 43.2 9.3 57 60-116 107-165 (324)
188 3hu3_A Transitional endoplasmi 88.7 1.5 5.1E-05 45.7 9.6 43 169-211 298-350 (489)
189 2ehv_A Hypothetical protein PH 88.5 0.66 2.3E-05 43.1 6.3 46 167-212 134-184 (251)
190 1n0w_A DNA repair protein RAD5 88.5 2.8 9.7E-05 38.4 10.6 22 60-81 24-45 (243)
191 2jgn_A DBX, DDX3, ATP-dependen 88.4 0.7 2.4E-05 41.2 6.1 90 69-175 28-121 (185)
192 2chq_A Replication factor C sm 88.0 0.23 7.8E-06 48.2 2.7 17 62-78 40-56 (319)
193 1ls1_A Signal recognition part 87.8 1.6 5.3E-05 42.2 8.6 46 167-212 179-225 (295)
194 2ce7_A Cell division protein F 87.5 0.51 1.8E-05 48.9 5.1 53 21-78 11-67 (476)
195 2fna_A Conserved hypothetical 86.6 14 0.00049 35.5 15.2 52 151-208 124-178 (357)
196 4a1f_A DNAB helicase, replicat 86.2 0.61 2.1E-05 46.0 4.6 39 59-102 45-83 (338)
197 3io5_A Recombination and repai 86.0 1.4 4.9E-05 42.9 7.0 91 62-181 30-124 (333)
198 1t6n_A Probable ATP-dependent 86.0 4.4 0.00015 36.5 10.3 72 266-340 82-164 (220)
199 2i4i_A ATP-dependent RNA helic 85.0 3.9 0.00013 40.9 10.2 72 92-174 275-350 (417)
200 3nwn_A Kinesin-like protein KI 84.7 0.65 2.2E-05 46.2 4.0 24 54-77 97-122 (359)
201 1qvr_A CLPB protein; coiled co 84.4 2.6 8.8E-05 47.2 9.3 18 61-78 192-209 (854)
202 3i32_A Heat resistant RNA depe 84.4 6.2 0.00021 38.0 10.8 74 93-177 28-105 (300)
203 3fe2_A Probable ATP-dependent 84.3 2.9 9.9E-05 38.6 8.3 73 265-341 101-183 (242)
204 3cf2_A TER ATPase, transitiona 84.3 1.1 3.6E-05 49.6 5.8 42 168-209 297-348 (806)
205 1oyw_A RECQ helicase, ATP-depe 83.9 1.8 6.2E-05 45.4 7.3 59 266-324 65-123 (523)
206 3cmu_A Protein RECA, recombina 83.9 1.5 5E-05 53.2 7.1 47 54-105 1415-1467(2050)
207 2ffh_A Protein (FFH); SRP54, s 83.8 2.6 8.9E-05 42.9 8.1 52 167-218 179-231 (425)
208 2d7d_A Uvrabc system protein B 83.7 5.9 0.0002 42.8 11.4 78 92-180 444-525 (661)
209 1r6b_X CLPA protein; AAA+, N-t 83.5 3.1 0.00011 45.8 9.3 19 60-78 207-225 (758)
210 1bg2_A Kinesin; motor protein, 83.4 0.83 2.8E-05 44.8 4.1 23 55-77 71-95 (325)
211 3e70_C DPA, signal recognition 83.4 4.8 0.00016 39.4 9.6 53 168-220 211-264 (328)
212 2v1x_A ATP-dependent DNA helic 83.3 1.9 6.5E-05 46.0 7.2 60 265-324 83-144 (591)
213 1e9r_A Conjugal transfer prote 83.2 1 3.6E-05 45.9 5.0 44 59-107 52-95 (437)
214 1xti_A Probable ATP-dependent 83.2 3.2 0.00011 41.1 8.6 76 92-178 249-328 (391)
215 1v8k_A Kinesin-like protein KI 82.9 0.86 2.9E-05 46.1 4.1 24 55-78 148-173 (410)
216 1hv8_A Putative ATP-dependent 82.8 3.5 0.00012 40.2 8.6 75 92-177 237-315 (367)
217 3dc4_A Kinesin-like protein NO 82.7 0.82 2.8E-05 45.2 3.8 23 55-77 88-112 (344)
218 3hr8_A Protein RECA; alpha and 82.6 0.62 2.1E-05 46.4 2.8 48 53-105 48-101 (356)
219 3cf2_A TER ATPase, transitiona 82.5 0.72 2.5E-05 50.9 3.6 54 22-78 473-529 (806)
220 2y65_A Kinesin, kinesin heavy 82.3 0.95 3.3E-05 45.1 4.1 23 55-77 78-102 (365)
221 2vvg_A Kinesin-2; motor protei 82.2 0.97 3.3E-05 44.8 4.1 23 55-77 83-107 (350)
222 3b6u_A Kinesin-like protein KI 82.1 0.97 3.3E-05 45.1 4.0 23 55-77 95-119 (372)
223 2nr8_A Kinesin-like protein KI 82.0 0.99 3.4E-05 44.9 4.0 24 54-77 96-121 (358)
224 1t5c_A CENP-E protein, centrom 82.0 0.99 3.4E-05 44.7 4.0 23 55-77 71-95 (349)
225 3gbj_A KIF13B protein; kinesin 81.9 0.98 3.4E-05 44.8 4.0 24 54-77 85-110 (354)
226 2zfi_A Kinesin-like protein KI 81.9 1 3.4E-05 45.0 4.1 23 55-77 83-107 (366)
227 3bor_A Human initiation factor 81.8 4.1 0.00014 37.4 8.2 73 265-340 97-179 (237)
228 2h58_A Kinesin-like protein KI 81.8 1 3.5E-05 44.2 4.1 25 53-77 72-98 (330)
229 4etp_A Kinesin-like protein KA 81.8 0.94 3.2E-05 45.8 3.9 26 53-78 132-159 (403)
230 4a14_A Kinesin, kinesin-like p 81.7 1 3.5E-05 44.5 4.1 23 55-77 77-101 (344)
231 3ber_A Probable ATP-dependent 81.7 4 0.00014 37.9 8.1 71 266-340 111-192 (249)
232 1goj_A Kinesin, kinesin heavy 81.7 1 3.5E-05 44.7 4.0 22 56-77 75-98 (355)
233 1x88_A Kinesin-like protein KI 81.7 0.97 3.3E-05 45.0 3.9 23 55-77 82-106 (359)
234 3t0q_A AGR253WP; kinesin, alph 81.7 0.92 3.1E-05 45.0 3.7 26 53-78 77-104 (349)
235 3lre_A Kinesin-like protein KI 81.6 1 3.5E-05 44.7 4.0 23 55-77 99-123 (355)
236 3pxi_A Negative regulator of g 81.4 3.3 0.00011 45.6 8.5 105 51-206 504-627 (758)
237 1wp9_A ATP-dependent RNA helic 81.2 5.5 0.00019 40.3 9.7 96 69-178 340-447 (494)
238 3i5x_A ATP-dependent RNA helic 81.2 12 0.00042 39.1 12.6 97 71-177 319-419 (563)
239 2heh_A KIF2C protein; kinesin, 81.1 1.1 3.6E-05 45.1 3.9 24 55-78 128-153 (387)
240 3fht_A ATP-dependent RNA helic 81.1 4.5 0.00015 40.3 8.8 73 93-176 266-342 (412)
241 1s2m_A Putative ATP-dependent 81.0 4.1 0.00014 40.5 8.5 73 93-176 258-334 (400)
242 3dmn_A Putative DNA helicase; 80.7 24 0.00083 30.6 12.5 114 211-343 9-123 (174)
243 2j37_W Signal recognition part 80.7 5.3 0.00018 41.6 9.2 35 62-101 103-137 (504)
244 2wbe_C Bipolar kinesin KRP-130 80.6 1.1 3.7E-05 44.9 3.8 22 56-77 95-118 (373)
245 1f9v_A Kinesin-like protein KA 80.6 0.95 3.2E-05 44.8 3.3 25 54-78 77-103 (347)
246 3cob_A Kinesin heavy chain-lik 80.5 1 3.4E-05 45.0 3.5 25 53-77 71-97 (369)
247 2pl3_A Probable ATP-dependent 80.5 4.9 0.00017 36.7 8.2 71 265-340 96-177 (236)
248 2xxa_A Signal recognition part 80.3 1.8 6E-05 44.3 5.4 35 62-100 102-136 (433)
249 3u06_A Protein claret segregat 80.1 1.1 3.8E-05 45.4 3.7 25 53-77 130-156 (412)
250 3lda_A DNA repair protein RAD5 80.1 4.4 0.00015 40.9 8.2 42 61-102 179-221 (400)
251 1c4o_A DNA nucleotide excision 80.0 7.2 0.00025 42.2 10.4 78 92-180 438-519 (664)
252 2owm_A Nckin3-434, related to 80.0 1.2 4.3E-05 45.5 4.1 23 55-77 130-154 (443)
253 2zts_A Putative uncharacterize 79.8 1.5 5E-05 40.5 4.3 50 60-114 30-79 (251)
254 3bfn_A Kinesin-like protein KI 79.6 1.1 3.8E-05 45.0 3.5 32 46-77 75-116 (388)
255 2gxq_A Heat resistant RNA depe 79.2 9.3 0.00032 33.8 9.5 72 265-340 71-150 (207)
256 3b85_A Phosphate starvation-in 79.2 1.9 6.5E-05 39.2 4.7 36 42-77 4-39 (208)
257 2bjv_A PSP operon transcriptio 78.8 2.9 0.0001 39.2 6.1 20 59-78 28-47 (265)
258 3pey_A ATP-dependent RNA helic 78.7 33 0.0011 33.4 14.3 77 92-179 242-322 (395)
259 3iuy_A Probable ATP-dependent 78.6 6.1 0.00021 35.9 8.2 72 265-340 93-173 (228)
260 1gku_B Reverse gyrase, TOP-RG; 78.5 4.4 0.00015 46.4 8.5 85 254-340 87-181 (1054)
261 2rep_A Kinesin-like protein KI 78.4 1.2 4.1E-05 44.6 3.3 24 54-77 108-133 (376)
262 2oca_A DAR protein, ATP-depend 78.2 14 0.00047 38.2 11.7 77 93-179 347-427 (510)
263 1vec_A ATP-dependent RNA helic 78.1 5.9 0.0002 35.2 7.8 72 265-340 70-152 (206)
264 1p9r_A General secretion pathw 77.7 2.8 9.6E-05 42.6 5.9 29 48-76 153-183 (418)
265 1ypw_A Transitional endoplasmi 77.7 8.8 0.0003 42.5 10.4 19 59-77 237-255 (806)
266 2yhs_A FTSY, cell division pro 77.6 8.3 0.00028 39.9 9.4 16 63-78 296-311 (503)
267 2yjt_D ATP-dependent RNA helic 79.1 0.47 1.6E-05 41.6 0.0 73 93-176 30-106 (170)
268 3sqw_A ATP-dependent RNA helic 77.5 17 0.00059 38.3 12.3 79 92-178 287-369 (579)
269 2oxc_A Probable ATP-dependent 77.4 4.1 0.00014 37.2 6.5 71 265-340 91-172 (230)
270 2oap_1 GSPE-2, type II secreti 77.2 6.2 0.00021 41.2 8.5 40 35-76 236-276 (511)
271 3ly5_A ATP-dependent RNA helic 77.1 9.8 0.00034 35.5 9.3 72 265-340 125-207 (262)
272 1ofh_A ATP-dependent HSL prote 75.6 5 0.00017 38.2 6.9 19 60-78 50-68 (310)
273 1kgd_A CASK, peripheral plasma 75.4 1.8 6E-05 38.2 3.3 20 59-78 4-23 (180)
274 3bh0_A DNAB-like replicative h 75.0 2.3 7.8E-05 41.4 4.2 49 60-114 68-116 (315)
275 1j8m_F SRP54, signal recogniti 75.0 5.3 0.00018 38.4 6.8 18 62-79 100-117 (297)
276 1vma_A Cell division protein F 74.4 4 0.00014 39.5 5.8 16 63-78 107-122 (306)
277 2v6i_A RNA helicase; membrane, 74.2 3.9 0.00013 41.6 5.9 68 93-172 171-238 (431)
278 2gza_A Type IV secretion syste 74.0 3.4 0.00012 41.0 5.3 20 57-76 172-191 (361)
279 1yks_A Genome polyprotein [con 73.9 3.5 0.00012 42.2 5.5 70 93-174 177-246 (440)
280 3a8t_A Adenylate isopentenyltr 73.8 1.8 6.1E-05 42.6 3.1 18 61-78 41-58 (339)
281 1u0j_A DNA replication protein 73.8 6.6 0.00023 37.1 6.9 46 30-78 71-122 (267)
282 3exa_A TRNA delta(2)-isopenten 73.7 1.7 5.8E-05 42.3 2.9 18 61-78 4-21 (322)
283 3nbx_X ATPase RAVA; AAA+ ATPas 73.6 4.3 0.00015 42.3 6.1 38 41-78 22-59 (500)
284 1ry6_A Internal kinesin; kines 73.5 2.3 7.8E-05 42.3 3.8 20 59-78 82-103 (360)
285 3vaa_A Shikimate kinase, SK; s 73.2 1.7 5.9E-05 38.9 2.7 20 59-78 24-43 (199)
286 3tau_A Guanylate kinase, GMP k 73.0 2.2 7.6E-05 38.5 3.4 20 59-78 7-26 (208)
287 3trf_A Shikimate kinase, SK; a 72.9 1.8 6E-05 38.1 2.6 19 60-78 5-23 (185)
288 3cmu_A Protein RECA, recombina 72.8 10 0.00035 46.0 9.7 120 59-209 1080-1217(2050)
289 2eyu_A Twitching motility prot 72.8 1.8 6.2E-05 40.9 2.8 21 57-77 22-42 (261)
290 2wv9_A Flavivirin protease NS2 72.6 4.3 0.00015 43.9 6.1 69 93-173 410-478 (673)
291 1lvg_A Guanylate kinase, GMP k 72.6 1.8 6.1E-05 38.9 2.6 19 59-77 3-21 (198)
292 2j0s_A ATP-dependent RNA helic 72.1 9.5 0.00032 38.0 8.2 73 93-176 276-352 (410)
293 1qhx_A CPT, protein (chloramph 72.1 1.9 6.4E-05 37.6 2.6 19 60-78 3-21 (178)
294 2pt7_A CAG-ALFA; ATPase, prote 72.0 4.1 0.00014 39.9 5.3 19 58-76 169-187 (330)
295 3foz_A TRNA delta(2)-isopenten 71.9 2.1 7.2E-05 41.5 3.0 17 62-78 12-28 (316)
296 2j41_A Guanylate kinase; GMP, 71.8 1.9 6.4E-05 38.6 2.6 21 58-78 4-24 (207)
297 4ag6_A VIRB4 ATPase, type IV s 71.6 3 0.0001 41.8 4.3 42 59-105 34-75 (392)
298 2r44_A Uncharacterized protein 71.5 2.3 7.9E-05 41.4 3.3 26 53-78 39-64 (331)
299 3lw7_A Adenylate kinase relate 71.4 1.8 6.3E-05 37.2 2.3 17 62-78 3-19 (179)
300 2ze6_A Isopentenyl transferase 71.3 2.2 7.7E-05 40.0 3.0 16 63-78 4-19 (253)
301 3iij_A Coilin-interacting nucl 71.2 1.5 5.1E-05 38.4 1.7 21 58-78 9-29 (180)
302 2qmh_A HPR kinase/phosphorylas 71.1 2 6.9E-05 38.8 2.5 19 60-78 34-52 (205)
303 1zp6_A Hypothetical protein AT 70.9 1.5 5.2E-05 38.7 1.7 20 58-77 7-26 (191)
304 3vkg_A Dynein heavy chain, cyt 70.9 7.5 0.00026 49.4 8.2 48 31-79 874-925 (3245)
305 1wrb_A DJVLGB; RNA helicase, D 70.8 9.7 0.00033 35.2 7.4 71 266-340 100-180 (253)
306 2qor_A Guanylate kinase; phosp 70.8 1.9 6.6E-05 38.7 2.4 22 57-78 9-30 (204)
307 2px0_A Flagellar biosynthesis 70.7 4.2 0.00014 39.1 4.9 37 60-100 105-141 (296)
308 2l82_A Designed protein OR32; 70.7 16 0.00054 28.8 7.2 52 269-320 5-56 (162)
309 3u4q_B ATP-dependent helicase/ 70.7 3.3 0.00011 48.0 4.9 47 63-112 4-50 (1166)
310 3tr0_A Guanylate kinase, GMP k 70.4 2.1 7.1E-05 38.2 2.5 20 59-78 6-25 (205)
311 3tbk_A RIG-I helicase domain; 70.2 9.2 0.00031 39.7 7.9 95 70-174 369-476 (555)
312 2ius_A DNA translocase FTSK; n 69.8 6.5 0.00022 40.9 6.4 42 60-102 167-208 (512)
313 3ney_A 55 kDa erythrocyte memb 69.5 2.9 0.0001 37.6 3.3 21 58-78 17-37 (197)
314 3a00_A Guanylate kinase, GMP k 69.5 2.4 8.3E-05 37.5 2.7 17 61-77 2-18 (186)
315 1tue_A Replication protein E1; 69.4 6.2 0.00021 35.8 5.3 45 32-78 28-76 (212)
316 1kht_A Adenylate kinase; phosp 69.1 2.4 8.1E-05 37.3 2.6 19 60-78 3-21 (192)
317 1ojl_A Transcriptional regulat 68.8 4.4 0.00015 39.1 4.6 20 59-78 24-43 (304)
318 3hws_A ATP-dependent CLP prote 68.6 4.2 0.00014 40.2 4.6 20 59-78 50-69 (363)
319 1kag_A SKI, shikimate kinase I 68.6 2.6 9E-05 36.4 2.7 19 60-78 4-22 (173)
320 4akg_A Glutathione S-transfera 68.3 8.2 0.00028 48.4 7.7 49 30-79 890-942 (2695)
321 1y63_A LMAJ004144AAA protein; 68.1 2.7 9.1E-05 37.1 2.7 20 59-78 9-28 (184)
322 2r2a_A Uncharacterized protein 68.0 3.3 0.00011 37.3 3.3 17 63-79 8-24 (199)
323 2db3_A ATP-dependent RNA helic 68.0 13 0.00044 37.7 8.2 68 96-174 303-374 (434)
324 1nks_A Adenylate kinase; therm 67.8 3.9 0.00013 35.8 3.8 17 62-78 3-19 (194)
325 4dzz_A Plasmid partitioning pr 67.7 3.8 0.00013 36.5 3.7 79 64-179 6-86 (206)
326 1ex7_A Guanylate kinase; subst 67.5 2.9 9.8E-05 37.3 2.7 17 61-77 2-18 (186)
327 2i1q_A DNA repair and recombin 67.5 5.4 0.00018 38.7 5.0 57 61-117 99-167 (322)
328 3dkp_A Probable ATP-dependent 67.3 2.3 7.9E-05 39.3 2.2 73 265-340 97-181 (245)
329 3crm_A TRNA delta(2)-isopenten 67.2 3 0.0001 40.7 3.0 17 62-78 7-23 (323)
330 1z6g_A Guanylate kinase; struc 67.1 3 0.0001 38.1 2.9 20 58-77 21-40 (218)
331 1m7g_A Adenylylsulfate kinase; 66.9 4.1 0.00014 36.7 3.7 32 46-78 12-43 (211)
332 1ly1_A Polynucleotide kinase; 66.7 2.6 9.1E-05 36.5 2.4 17 62-78 4-20 (181)
333 2iut_A DNA translocase FTSK; n 66.7 8.3 0.00028 40.6 6.4 42 61-103 215-256 (574)
334 3bgw_A DNAB-like replicative h 66.6 5.4 0.00018 40.8 5.0 38 60-102 197-234 (444)
335 4h1g_A Maltose binding protein 66.5 3.7 0.00013 44.9 3.9 25 53-77 454-480 (715)
336 2jlq_A Serine protease subunit 66.4 6.6 0.00023 40.1 5.7 69 93-173 188-256 (451)
337 3kb2_A SPBC2 prophage-derived 66.4 2.7 9.2E-05 36.1 2.3 17 62-78 3-19 (173)
338 1qde_A EIF4A, translation init 66.1 12 0.00042 33.6 6.9 71 265-340 81-161 (224)
339 2xau_A PRE-mRNA-splicing facto 66.1 34 0.0012 37.5 11.6 75 93-174 303-393 (773)
340 4f4c_A Multidrug resistance pr 65.8 8.5 0.00029 45.2 7.0 41 166-206 1233-1273(1321)
341 1lv7_A FTSH; alpha/beta domain 65.5 2.8 9.7E-05 39.1 2.4 55 21-78 7-63 (257)
342 1cr0_A DNA primase/helicase; R 65.4 5.5 0.00019 38.0 4.6 39 59-101 34-72 (296)
343 2x8a_A Nuclear valosin-contain 65.4 1.3 4.5E-05 42.2 0.1 54 21-77 5-61 (274)
344 1znw_A Guanylate kinase, GMP k 64.8 3.4 0.00011 37.2 2.7 22 56-77 16-37 (207)
345 1c9k_A COBU, adenosylcobinamid 64.6 4.1 0.00014 36.1 3.1 43 63-114 2-44 (180)
346 2r8r_A Sensor protein; KDPD, P 64.6 6.8 0.00023 36.1 4.7 23 62-84 8-30 (228)
347 3d3q_A TRNA delta(2)-isopenten 64.4 3.7 0.00013 40.4 3.1 17 62-78 9-25 (340)
348 4eun_A Thermoresistant glucoki 64.3 3.4 0.00012 36.9 2.7 20 59-78 28-47 (200)
349 2ewv_A Twitching motility prot 64.2 3.2 0.00011 41.4 2.6 20 58-77 134-153 (372)
350 3cmw_A Protein RECA, recombina 64.1 13 0.00043 44.5 8.0 88 61-181 1432-1522(1706)
351 1s96_A Guanylate kinase, GMP k 64.1 3.5 0.00012 37.8 2.7 21 57-77 13-33 (219)
352 4a2p_A RIG-I, retinoic acid in 63.7 12 0.00041 38.9 7.2 72 266-341 55-137 (556)
353 3eph_A TRNA isopentenyltransfe 63.6 3.7 0.00013 41.3 2.9 17 62-78 4-20 (409)
354 3jvv_A Twitching mobility prot 63.5 3.8 0.00013 40.6 3.0 19 59-77 122-140 (356)
355 4gp7_A Metallophosphoesterase; 63.5 3.1 0.00011 36.3 2.1 20 59-78 8-27 (171)
356 3cm0_A Adenylate kinase; ATP-b 63.4 2.6 8.9E-05 36.9 1.6 20 59-78 3-22 (186)
357 3t15_A Ribulose bisphosphate c 63.2 3.2 0.00011 39.8 2.3 18 61-78 37-54 (293)
358 1w36_B RECB, exodeoxyribonucle 62.9 10 0.00035 44.0 6.9 54 62-115 18-78 (1180)
359 1knq_A Gluconate kinase; ALFA/ 62.8 3.3 0.00011 36.0 2.1 19 60-78 8-26 (175)
360 2c95_A Adenylate kinase 1; tra 62.0 4.6 0.00016 35.5 3.1 21 58-78 7-27 (196)
361 1xjc_A MOBB protein homolog; s 61.9 3.5 0.00012 36.1 2.2 16 62-77 6-21 (169)
362 1rj9_A FTSY, signal recognitio 61.8 7.4 0.00025 37.5 4.7 19 60-78 102-120 (304)
363 1tf7_A KAIC; homohexamer, hexa 61.7 12 0.00042 39.0 6.7 49 59-113 280-328 (525)
364 4f4c_A Multidrug resistance pr 61.6 21 0.00072 41.8 9.3 35 166-200 570-604 (1321)
365 1tev_A UMP-CMP kinase; ploop, 61.5 3.4 0.00012 36.3 2.1 19 60-78 3-21 (196)
366 2yvu_A Probable adenylyl-sulfa 61.1 3.4 0.00012 36.3 2.0 19 60-78 13-31 (186)
367 3mwy_W Chromo domain-containin 60.9 44 0.0015 36.8 11.4 77 92-178 571-653 (800)
368 1f2t_A RAD50 ABC-ATPase; DNA d 60.6 4.2 0.00014 34.6 2.4 16 62-77 25-40 (149)
369 3t61_A Gluconokinase; PSI-biol 60.2 4.1 0.00014 36.4 2.4 18 61-78 19-36 (202)
370 2bdt_A BH3686; alpha-beta prot 60.2 4.1 0.00014 35.8 2.4 17 62-78 4-20 (189)
371 1zuh_A Shikimate kinase; alpha 60.0 4.4 0.00015 34.9 2.5 18 61-78 8-25 (168)
372 2zr9_A Protein RECA, recombina 59.9 8.7 0.0003 37.9 4.9 45 53-102 48-98 (349)
373 3sxu_A DNA polymerase III subu 59.9 24 0.00082 30.0 7.0 82 251-344 24-105 (150)
374 2rhm_A Putative kinase; P-loop 59.8 4.1 0.00014 35.7 2.3 19 60-78 5-23 (193)
375 1u94_A RECA protein, recombina 59.8 8.9 0.0003 37.9 4.9 39 60-103 63-101 (356)
376 3fmo_B ATP-dependent RNA helic 59.8 11 0.00036 36.2 5.4 82 253-341 147-242 (300)
377 3uie_A Adenylyl-sulfate kinase 59.5 4 0.00014 36.4 2.2 32 46-78 12-43 (200)
378 2yan_A Glutaredoxin-3; oxidore 59.4 33 0.0011 26.7 7.5 63 257-320 8-76 (105)
379 1um8_A ATP-dependent CLP prote 59.3 4.5 0.00015 40.2 2.7 19 60-78 72-90 (376)
380 1q57_A DNA primase/helicase; d 59.2 4.8 0.00016 41.9 3.0 40 59-102 241-280 (503)
381 2v54_A DTMP kinase, thymidylat 59.2 4.3 0.00015 36.1 2.3 20 59-78 3-22 (204)
382 4fcw_A Chaperone protein CLPB; 58.8 5.2 0.00018 38.2 3.0 17 62-78 49-65 (311)
383 3eiq_A Eukaryotic initiation f 58.7 34 0.0012 33.7 9.2 75 265-342 107-191 (414)
384 3ipz_A Monothiol glutaredoxin- 58.6 38 0.0013 26.7 7.8 55 256-311 8-68 (109)
385 3p32_A Probable GTPase RV1496/ 58.3 61 0.0021 31.6 10.9 17 62-78 81-97 (355)
386 2c9o_A RUVB-like 1; hexameric 58.3 4.5 0.00015 41.5 2.6 18 61-78 64-81 (456)
387 1ixz_A ATP-dependent metallopr 58.3 4.5 0.00015 37.6 2.4 55 20-77 10-66 (254)
388 1w9i_A Myosin II heavy chain; 58.3 24 0.00081 38.6 8.3 57 22-78 126-190 (770)
389 3b9q_A Chloroplast SRP recepto 58.2 7.8 0.00027 37.3 4.1 17 62-78 102-118 (302)
390 3nwj_A ATSK2; P loop, shikimat 58.1 7.1 0.00024 36.5 3.7 20 59-78 47-66 (250)
391 2ykg_A Probable ATP-dependent 58.1 12 0.00041 40.4 6.1 79 92-177 397-488 (696)
392 1via_A Shikimate kinase; struc 58.1 5.1 0.00017 34.7 2.6 17 62-78 6-22 (175)
393 1nij_A Hypothetical protein YJ 58.1 6.9 0.00023 38.0 3.7 33 63-102 7-39 (318)
394 3qf7_A RAD50; ABC-ATPase, ATPa 57.8 4.4 0.00015 40.2 2.4 17 62-78 25-41 (365)
395 3hix_A ALR3790 protein; rhodan 57.7 12 0.00042 29.4 4.6 39 262-300 48-87 (106)
396 3fb4_A Adenylate kinase; psych 57.6 4.8 0.00016 36.2 2.4 17 62-78 2-18 (216)
397 3o8b_A HCV NS3 protease/helica 57.4 11 0.00039 40.5 5.5 67 92-173 395-461 (666)
398 3lnc_A Guanylate kinase, GMP k 57.4 3.9 0.00013 37.5 1.7 20 59-78 26-45 (231)
399 2iyv_A Shikimate kinase, SK; t 57.1 5.7 0.0002 34.6 2.8 18 61-78 3-20 (184)
400 1e6c_A Shikimate kinase; phosp 57.0 5.1 0.00017 34.5 2.4 18 61-78 3-20 (173)
401 1qf9_A UMP/CMP kinase, protein 56.8 5 0.00017 35.1 2.3 17 62-78 8-24 (194)
402 1v5w_A DMC1, meiotic recombina 56.8 7.9 0.00027 38.0 4.0 56 61-116 123-180 (343)
403 2bwj_A Adenylate kinase 5; pho 56.8 5.4 0.00019 35.2 2.6 20 59-78 11-30 (199)
404 2z0m_A 337AA long hypothetical 56.8 17 0.0006 34.6 6.5 71 92-177 219-293 (337)
405 3zyw_A Glutaredoxin-3; metal b 56.8 38 0.0013 26.9 7.5 46 265-310 14-65 (111)
406 3d8b_A Fidgetin-like protein 1 56.7 5.1 0.00017 39.6 2.6 19 60-78 117-135 (357)
407 3kta_A Chromosome segregation 56.6 5.1 0.00017 34.9 2.3 16 62-77 28-43 (182)
408 1z5z_A Helicase of the SNF2/RA 56.6 17 0.00057 34.3 6.1 96 68-178 92-193 (271)
409 2jtq_A Phage shock protein E; 56.5 29 0.001 25.7 6.5 37 264-300 39-75 (85)
410 1fuu_A Yeast initiation factor 56.4 50 0.0017 32.1 10.0 73 265-342 88-170 (394)
411 1gvn_B Zeta; postsegregational 56.3 4.5 0.00015 38.7 2.0 17 62-78 35-51 (287)
412 2r62_A Cell division protease 56.0 2.8 9.5E-05 39.3 0.5 19 60-78 44-62 (268)
413 3dl0_A Adenylate kinase; phosp 56.0 5.3 0.00018 36.0 2.4 17 62-78 2-18 (216)
414 1xp8_A RECA protein, recombina 55.9 12 0.00041 37.1 5.1 46 53-103 61-112 (366)
415 1cke_A CK, MSSA, protein (cyti 55.8 5.3 0.00018 36.2 2.4 18 61-78 6-23 (227)
416 1zd8_A GTP:AMP phosphotransfer 55.7 5.2 0.00018 36.5 2.3 19 60-78 7-25 (227)
417 1aky_A Adenylate kinase; ATP:A 55.6 6 0.0002 35.8 2.7 19 60-78 4-22 (220)
418 2plr_A DTMP kinase, probable t 55.6 4.9 0.00017 35.8 2.1 20 59-78 3-22 (213)
419 2pez_A Bifunctional 3'-phospho 55.5 5.2 0.00018 34.8 2.2 20 59-78 4-23 (179)
420 2whx_A Serine protease/ntpase/ 55.4 15 0.0005 39.3 6.1 69 93-173 355-423 (618)
421 2qt1_A Nicotinamide riboside k 55.3 3 0.0001 37.4 0.6 20 59-78 20-39 (207)
422 3asz_A Uridine kinase; cytidin 55.3 5.1 0.00017 35.9 2.2 18 60-77 6-23 (211)
423 3l9o_A ATP-dependent RNA helic 55.3 11 0.00037 43.3 5.3 69 261-340 222-296 (1108)
424 1ukz_A Uridylate kinase; trans 54.7 5.8 0.0002 35.3 2.4 17 62-78 17-33 (203)
425 2pt5_A Shikimate kinase, SK; a 54.6 5.8 0.0002 33.9 2.3 17 62-78 2-18 (168)
426 3c8u_A Fructokinase; YP_612366 54.5 4.8 0.00017 36.2 1.8 18 60-77 22-39 (208)
427 1zak_A Adenylate kinase; ATP:A 54.5 6.5 0.00022 35.6 2.7 18 61-78 6-23 (222)
428 3iwh_A Rhodanese-like domain p 54.4 7 0.00024 30.9 2.6 38 263-300 53-90 (103)
429 3auy_A DNA double-strand break 54.3 5.4 0.00018 39.7 2.3 16 62-77 27-42 (371)
430 2fsf_A Preprotein translocase 54.2 31 0.0011 38.0 8.4 82 252-340 102-200 (853)
431 2cdn_A Adenylate kinase; phosp 54.1 5.9 0.0002 35.2 2.4 18 61-78 21-38 (201)
432 1zu4_A FTSY; GTPase, signal re 54.0 5.1 0.00018 39.0 2.0 16 63-78 108-123 (320)
433 4a2q_A RIG-I, retinoic acid in 54.0 20 0.00069 39.5 7.1 72 266-341 296-378 (797)
434 1jjv_A Dephospho-COA kinase; P 53.9 6 0.0002 35.3 2.4 16 63-78 5-20 (206)
435 2if2_A Dephospho-COA kinase; a 53.8 5.9 0.0002 35.2 2.3 17 62-78 3-19 (204)
436 1ak2_A Adenylate kinase isoenz 53.6 6.4 0.00022 36.0 2.6 19 60-78 16-34 (233)
437 2jaq_A Deoxyguanosine kinase; 53.6 6.1 0.00021 34.9 2.3 17 62-78 2-18 (205)
438 1iy2_A ATP-dependent metallopr 53.5 5.9 0.0002 37.4 2.4 55 21-78 35-91 (278)
439 2va8_A SSO2462, SKI2-type heli 53.4 45 0.0015 36.0 9.7 77 92-175 251-363 (715)
440 2wwf_A Thymidilate kinase, put 53.2 6.8 0.00023 35.0 2.6 20 59-78 9-28 (212)
441 4anj_A Unconventional myosin-V 53.2 13 0.00045 42.2 5.4 64 22-86 97-169 (1052)
442 2pbr_A DTMP kinase, thymidylat 52.8 6.4 0.00022 34.4 2.4 16 63-78 3-18 (195)
443 3tif_A Uncharacterized ABC tra 52.7 6.1 0.00021 36.5 2.2 18 59-76 30-47 (235)
444 3g5j_A Putative ATP/GTP bindin 52.6 21 0.00072 29.0 5.5 46 255-301 78-125 (134)
445 3gk5_A Uncharacterized rhodane 52.5 9.4 0.00032 30.2 3.1 38 263-300 52-89 (108)
446 4a74_A DNA repair and recombin 52.5 6.3 0.00021 35.6 2.3 19 60-78 25-43 (231)
447 2og2_A Putative signal recogni 52.5 11 0.00036 37.4 4.1 16 63-78 160-175 (359)
448 1nn5_A Similar to deoxythymidy 52.2 7.3 0.00025 34.8 2.7 20 59-78 8-27 (215)
449 1in4_A RUVB, holliday junction 52.1 8.5 0.00029 37.5 3.3 18 61-78 52-69 (334)
450 1ye8_A Protein THEP1, hypothet 52.0 8.7 0.0003 33.7 3.0 16 62-77 2-17 (178)
451 1q0u_A Bstdead; DEAD protein, 51.7 17 0.00057 32.6 5.1 71 266-340 72-156 (219)
452 3tqc_A Pantothenate kinase; bi 51.6 26 0.00091 33.9 6.7 15 63-77 95-109 (321)
453 2z0h_A DTMP kinase, thymidylat 51.4 7 0.00024 34.3 2.4 16 63-78 3-18 (197)
454 1e4v_A Adenylate kinase; trans 51.4 6.8 0.00023 35.2 2.3 17 62-78 2-18 (214)
455 3foj_A Uncharacterized protein 51.1 9.3 0.00032 29.7 2.8 38 263-300 53-90 (100)
456 3a4m_A L-seryl-tRNA(SEC) kinas 51.0 6.9 0.00024 36.6 2.4 18 61-78 5-22 (260)
457 1yrb_A ATP(GTP)binding protein 50.9 9.9 0.00034 35.2 3.4 33 62-100 16-48 (262)
458 3tlx_A Adenylate kinase 2; str 50.8 8.2 0.00028 35.7 2.8 19 60-78 29-47 (243)
459 3sr0_A Adenylate kinase; phosp 50.8 9.2 0.00031 34.5 3.1 16 63-78 3-18 (206)
460 1uf9_A TT1252 protein; P-loop, 50.4 7.2 0.00024 34.5 2.3 17 62-78 10-26 (203)
461 1nlf_A Regulatory protein REPA 50.3 8.1 0.00028 36.5 2.8 25 57-81 27-51 (279)
462 1g8p_A Magnesium-chelatase 38 50.2 4.4 0.00015 39.5 0.8 19 60-78 45-63 (350)
463 3pxg_A Negative regulator of g 50.1 9.5 0.00032 39.2 3.4 19 60-78 201-219 (468)
464 2bbw_A Adenylate kinase 4, AK4 50.0 7.4 0.00025 35.9 2.4 19 60-78 27-45 (246)
465 2v9p_A Replication protein E1; 49.9 9.1 0.00031 36.9 3.1 19 59-77 125-143 (305)
466 2vli_A Antibiotic resistance p 49.9 5.6 0.00019 34.5 1.5 19 60-78 5-23 (183)
467 3b6e_A Interferon-induced heli 49.9 11 0.00039 33.4 3.6 56 265-324 81-140 (216)
468 2cbz_A Multidrug resistance-as 49.8 7.2 0.00025 36.1 2.2 18 59-76 30-47 (237)
469 1gmx_A GLPE protein; transfera 49.8 19 0.00064 28.3 4.5 39 263-301 55-94 (108)
470 3be4_A Adenylate kinase; malar 49.7 8.2 0.00028 34.8 2.6 19 60-78 5-23 (217)
471 2z83_A Helicase/nucleoside tri 49.7 9.4 0.00032 39.1 3.3 69 93-173 190-258 (459)
472 4edh_A DTMP kinase, thymidylat 49.7 8.7 0.0003 34.9 2.7 21 58-78 4-24 (213)
473 3eme_A Rhodanese-like domain p 49.5 9.3 0.00032 29.8 2.6 38 263-300 53-90 (103)
474 1tf5_A Preprotein translocase 49.4 47 0.0016 36.6 8.8 69 265-339 123-208 (844)
475 1g8x_A Myosin II heavy chain f 49.2 22 0.00077 40.2 6.5 57 22-78 126-190 (1010)
476 3qks_A DNA double-strand break 49.0 8 0.00027 34.7 2.4 16 62-77 25-40 (203)
477 1sgw_A Putative ABC transporte 49.0 7.8 0.00027 35.2 2.3 18 59-76 34-51 (214)
478 1w7j_A Myosin VA; motor protei 48.8 54 0.0018 36.0 9.2 57 22-78 110-174 (795)
479 2xb4_A Adenylate kinase; ATP-b 48.8 7.9 0.00027 35.2 2.3 17 62-78 2-18 (223)
480 2f1r_A Molybdopterin-guanine d 48.8 7 0.00024 34.1 1.9 16 62-77 4-19 (171)
481 2i3b_A HCR-ntpase, human cance 48.6 12 0.0004 33.2 3.4 42 166-210 103-146 (189)
482 1lkx_A Myosin IE heavy chain; 48.6 17 0.0006 39.2 5.3 57 22-78 48-112 (697)
483 3dmq_A RNA polymerase-associat 48.4 23 0.00078 40.1 6.5 77 92-178 502-584 (968)
484 1wv9_A Rhodanese homolog TT165 48.3 15 0.0005 28.1 3.5 37 264-301 52-88 (94)
485 3umf_A Adenylate kinase; rossm 48.2 10 0.00035 34.5 3.0 18 61-78 30-47 (217)
486 2v26_A Myosin VI; calmodulin-b 47.8 21 0.00072 39.2 5.8 57 22-78 93-158 (784)
487 1g41_A Heat shock protein HSLU 47.6 8.7 0.0003 39.2 2.6 19 60-78 50-68 (444)
488 1vht_A Dephospho-COA kinase; s 47.6 8.5 0.00029 34.6 2.3 17 62-78 6-22 (218)
489 3k1j_A LON protease, ATP-depen 47.6 13 0.00044 39.6 4.1 24 55-78 55-78 (604)
490 1rz3_A Hypothetical protein rb 47.4 8.6 0.00029 34.3 2.3 17 62-78 24-40 (201)
491 2ff7_A Alpha-hemolysin translo 47.1 8.2 0.00028 35.9 2.2 18 59-76 34-51 (247)
492 3gfo_A Cobalt import ATP-bindi 47.0 8 0.00027 36.7 2.1 18 59-76 33-50 (275)
493 1np6_A Molybdopterin-guanine d 47.0 8.6 0.00029 33.7 2.2 16 62-77 8-23 (174)
494 2ghi_A Transport protein; mult 46.9 8.4 0.00029 36.2 2.2 18 59-76 45-62 (260)
495 2pze_A Cystic fibrosis transme 46.9 8.3 0.00028 35.4 2.2 18 59-76 33-50 (229)
496 1gtv_A TMK, thymidylate kinase 46.8 4.3 0.00015 36.3 0.2 15 63-77 3-17 (214)
497 2grj_A Dephospho-COA kinase; T 46.7 9.3 0.00032 34.0 2.4 16 63-78 15-30 (192)
498 2v3c_C SRP54, signal recogniti 46.5 4.4 0.00015 41.3 0.2 34 62-100 101-134 (432)
499 3fmp_B ATP-dependent RNA helic 46.5 4.2 0.00014 41.8 0.0 70 93-173 333-406 (479)
500 2dfs_A Myosin-5A; myosin-V, in 46.4 61 0.0021 37.0 9.6 57 22-78 110-174 (1080)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.8e-64 Score=527.73 Aligned_cols=369 Identities=34% Similarity=0.575 Sum_probs=337.0
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCCCeEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~---~~~g~~~ 96 (534)
+...+|++++|++.++++|.++||..|||+|++++|.+++|+|+++.|+||||||++|++|+++.+.... ...++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 3456899999999999999999999999999999999999999999999999999999999999987642 2346789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
|||+|||+|+.|+.+.+++++...++++..++||.....+...+..+++|+|+||++|.+++.+ ....+.++++||+||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDE 211 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEET
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEcc
Confidence 9999999999999999999998889999999999999999888889999999999999999986 457799999999999
Q ss_pred CCccccCChHHHHHHHHHhc--CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHH
Q 009477 177 ADCLFGMGFAEQLHKILGQL--SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~--~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ 254 (534)
||++++++|...+..++..+ +..+|+++||||+|+.+..++..++.++..+.+.........+.+.+..+....+...
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 291 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK 291 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHH
T ss_pred HhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHH
Confidence 99999999999999999875 6789999999999999999999999999988887766667788889999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCC
Q 009477 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (534)
Q Consensus 255 L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~ 334 (534)
|..++.+. ..++||||+|+..++.+++.|...|+.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|+
T Consensus 292 l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~ 368 (434)
T 2db3_A 292 LIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKN 368 (434)
T ss_dssp HHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCccc
Confidence 99998875 334999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecc-ccHHHHHHHHHHhCCCccCC
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAA 392 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~-~e~~~~~~l~~~~~~~~~~~ 392 (534)
+++||+||+|.+..+|+||+||+||+|+.|.+++|+++ ++...+.++...+.......
T Consensus 369 v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~v 427 (434)
T 2db3_A 369 IKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427 (434)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999995 46666777766665444433
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3e-60 Score=495.82 Aligned_cols=368 Identities=32% Similarity=0.562 Sum_probs=339.2
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|++++|++.+++++...||..|+|+|+++++.++.|+++++.++||||||++|++|+++.+... ..+.++||++|
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 113 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAP 113 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcC
Confidence 4679999999999999999999999999999999999999999999999999999999999887532 24578999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
|++|+.|+.+.++.++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||+||||++.
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHH
Confidence 99999999999999999999999999999999988888888999999999999999886 46778999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhh-HHHHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMIR 260 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~~l~ 260 (534)
+++|...+..++..++...|++++|||+|+.+..+...++.+|..+...........+.+.+..+.... +...+..++.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHH
Confidence 999999999999999999999999999999998888899999988877666666667777777776554 7888888887
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~ 340 (534)
.. ..+++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 273 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 273 TL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 350 (410)
T ss_dssp HH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE
T ss_pred hc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE
Confidence 65 4579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 009477 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 341 ~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
||+|.++..|+||+||+||.|++|.+++|+++.|...+.+++.+++..+...|.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999988876653
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.8e-60 Score=493.04 Aligned_cols=369 Identities=31% Similarity=0.532 Sum_probs=331.2
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC---------
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--------- 90 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--------- 90 (534)
+...+|++++|++.++++|..+||..|||+|++++|.++.|+|+++.||||||||++|++|+++.+.....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 45668999999999999999999999999999999999999999999999999999999999998765421
Q ss_pred -------CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC
Q 009477 91 -------QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED 163 (534)
Q Consensus 91 -------~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~ 163 (534)
..++++||++||++|+.|+.+.++.++...++++..++||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 2246799999999999999999999998889999999999999998888888999999999999999886 45
Q ss_pred CCCCCeeEEEEcCCCccccCChHHHHHHHHHh--cCC--CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCc
Q 009477 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (534)
Q Consensus 164 ~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~--~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 239 (534)
+.+.++++||+||||++.+++|...+..++.. ++. ..|++++|||+|+.+..+...++.++..+...........+
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 77899999999999999999999999999874 333 67899999999999999999999999888777666667788
Q ss_pred eEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEE
Q 009477 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (534)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~i 319 (534)
.+.+..+....+...+..++... ..++++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 251 TQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred eEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 88888888888999888888764 46789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCcc
Q 009477 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 320 LI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~ 390 (534)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++.|...+.++...+.....
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999888888777654433
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.9e-58 Score=476.20 Aligned_cols=370 Identities=30% Similarity=0.514 Sum_probs=334.1
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li 98 (534)
.....+|++++|++.++++|.++||..|+|+|+++++.++.++++++.+|||||||++|++|+++.+... ..+.++||
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 94 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALI 94 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999887643 23568999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
++||++|+.|+.+.++.++...++++..++|+.....+...+..+++|+|+||++|.+.+.. ....+.++++||+||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 95 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEAD 173 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHH
T ss_pred EcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCch
Confidence 99999999999999999998889999999999998888777778999999999999998875 45678999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHH
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (534)
++.+.+|...+..++..++...|++++|||+|..+..+...++.+|..+..... .....+...+..+....+...+..+
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHH
Confidence 999888999999999999989999999999999999999999988876654432 3345667777777888888888888
Q ss_pred HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE
Q 009477 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (534)
Q Consensus 259 l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V 338 (534)
+... .++++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 253 FSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred Hhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 8764 56799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 009477 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 339 I~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
|++++|.++..|+||+||+||.|++|.|+++++++|...+..++..++.++...|.
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 99999999999999999999999999999999999999999999999988876653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-58 Score=480.86 Aligned_cols=369 Identities=33% Similarity=0.577 Sum_probs=323.6
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|+++++++.+++.+.+.||..|+|+|+++++.++.|+++++.++||||||++|++|+++.+.... .+.++||++|
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P 116 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAP 116 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--CSCCEEEECS
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--CceeEEEEeC
Confidence 46899999999999999999999999999999999999999999999999999999999999876532 3567999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|++|+.|+.+.++.++...++.+..++||.....+...+. .+++|+|+||++|++.+.. ..+.+.++++||+||||++
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHh
Confidence 9999999999999999989999999999999888777766 6889999999999999986 5677889999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhh-HHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMI 259 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~~l 259 (534)
.+.+|...+..++..++.+.|++++|||+++.+..+...++.++..+...........+.+.+..+...+ +...+..++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877766666677777777776544 777787877
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
... ..+++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 276 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 276 ETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 754 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 009477 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (534)
Q Consensus 340 ~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p~~ 395 (534)
++++|.+...|+||+||+||.|++|.|+.++++.|...+.+++.+++..+...|..
T Consensus 354 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999999999999999999999999888776643
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-56 Score=464.55 Aligned_cols=369 Identities=29% Similarity=0.503 Sum_probs=329.6
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
+.+|++++|++.++++|.+.||..|+|+|+++++.++.++++++.+|||+|||++|++|+++.+... ..+.++||++|
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 84 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCH 84 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEECC
Confidence 4679999999999999999999999999999999999999999999999999999999999887543 23568999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhC-CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
|++|+.|+.+.++++.... ++++..++||.....+...+.. .++|+|+||+++...+.. ..+.+.++++||+||||+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHH
Confidence 9999999999999998765 7999999999988777666654 589999999999998876 456789999999999999
Q ss_pred cccC-ChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccc-cCCCceEEEEEechhhHHHHHHH
Q 009477 180 LFGM-GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAALLY 257 (534)
Q Consensus 180 l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~k~~~L~~ 257 (534)
+.+. ++...+..++...+...|++++|||+++.+..+...++.+|..+....... ....+...+..+....+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 243 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHH
Confidence 9874 788889999999988999999999999999999999999998777655433 33466777888888889999988
Q ss_pred HHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCE
Q 009477 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (534)
Q Consensus 258 ~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~ 337 (534)
++... .++++||||+++.+++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 244 ~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 244 LLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 88865 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc-cHHHHHHHHHHhCCCccCCCCh
Q 009477 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (534)
Q Consensus 338 VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~-e~~~~~~l~~~~~~~~~~~p~~ 395 (534)
||++++|.++..|+||+||+||.|++|.+++++++. +...+.+++..++.++...|..
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999986 4566788888888877766643
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-56 Score=457.45 Aligned_cols=360 Identities=34% Similarity=0.638 Sum_probs=328.4
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
...+|++++|++.+.++|.+.||..|+|+|+++++.++++ +++++.+|||||||++|++|+++.+... .+.++||+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~lil 80 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---NGIEAIIL 80 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCCEEEE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---CCCcEEEE
Confidence 4568999999999999999999999999999999999988 7999999999999999999999887643 46789999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+|+++|+.|+.+.++.+....++.+..++||.....+...+. +++|+|+||++|.+.+.. ....+.++++||+||||+
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchH
Confidence 999999999999999998888899999999998877766654 789999999999998876 456789999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHH
Q 009477 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (534)
Q Consensus 180 l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (534)
+.+.+|...+..++...+...+++++|||+++........++.++..+.... ...+...+..+...++...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888876665433 336777888888888888888877
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
. ..+.++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 235 ~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 235 K---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp C---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred h---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 5 4678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCC
Q 009477 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (534)
Q Consensus 340 ~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 392 (534)
++++|.++..|.||+||+||.|++|.+++++++.|...+..++..++.++...
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999999999988876643
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.9e-56 Score=466.69 Aligned_cols=366 Identities=31% Similarity=0.530 Sum_probs=325.3
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li 98 (534)
...+|+++++++.+++++.+.||..|+|+|.++++.++.+ +++++.||||||||++|++|+++.+... ..+.++||
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~li 100 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 100 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCEEE
Confidence 4568999999999999999999999999999999999987 8999999999999999999999988654 23568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcc-CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 99 LSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
++||++|+.|+.+.+++++.. .++.+....++....... ...++|+|+||++|.+++...+.+.+.++++||+|||
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 999999999999999998876 378888888877654321 3468999999999999997656677899999999999
Q ss_pred Ccccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHHH
Q 009477 178 DCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAAL 255 (534)
Q Consensus 178 h~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L 255 (534)
|++.+ .++...+..+...++.+.|++++|||+++.+..+...++.++..+.+.........+...+..+.. ..+...+
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHH
Confidence 99987 688899999999999999999999999999999999999999988887777777777777776654 5577777
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v 335 (534)
..++... .++++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 258 ~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 258 CNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 7777765 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC------ChhhhHHhhccCCCCCCcceEEEEecccc-HHHHHHHHHHhCCCccCCC
Q 009477 336 DNVINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 336 ~~VI~~~~p~------s~~~~~qr~GR~gR~g~~G~~i~~~~~~e-~~~~~~l~~~~~~~~~~~p 393 (534)
++||+||+|. +...|+||+||+||.|+.|.+++++++.+ ..++..++..++..+...+
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999994 66899999999999999999999999765 7788888888888776654
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-55 Score=457.75 Aligned_cols=363 Identities=30% Similarity=0.559 Sum_probs=319.4
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
..+|+++||++.+++++.+.||..|+|+|+++++.++.+ +++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 81 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAICL 81 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEEE
Confidence 578999999999999999999999999999999999998 8999999999999999999999987643 246689999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+||++|+.|+.+.+++++...++.+...+++...... ..+++|+|+||++|.+.+.. ....+.++++||+||||+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhh
Confidence 9999999999999999998888998888887543322 34789999999999998876 557789999999999999
Q ss_pred ccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHHHHH
Q 009477 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (534)
Q Consensus 180 l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (534)
+.+ .++...+..+...++...|++++|||+++.+..+....+.++..+...........+...+..+.. ..+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 987 788999999999999999999999999999999999999999888777766666777777777644 445566655
Q ss_pred HHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCE
Q 009477 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (534)
Q Consensus 258 ~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~ 337 (534)
++... .++++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 ~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 237 LYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 55433 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhhhHHhhccCCCCCCcceEEEEeccc-cHHHHHHHHHHhC-CCccCCC
Q 009477 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLS-KPIRAAP 393 (534)
Q Consensus 338 VI~~~~p~------s~~~~~qr~GR~gR~g~~G~~i~~~~~~-e~~~~~~l~~~~~-~~~~~~p 393 (534)
||+||+|. ++..|+||+||+||.|++|.+++++.+. +...+..++..++ ..+...|
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 99999998 9999999999999999999999999875 4566677777776 4444433
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.3e-56 Score=484.59 Aligned_cols=371 Identities=33% Similarity=0.511 Sum_probs=314.7
Q ss_pred CCCCCcCCCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--C
Q 009477 20 SKSGGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--Q 91 (534)
Q Consensus 20 ~~~~~f~~l~----l~~~l~~~l~~~g~~~~~~~Q~~ai~~il--~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--~ 91 (534)
....+|+++. |++++++++..+||..|+|+|.++++.++ .++|+++.||||||||++|++|+++.+..... .
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 4456777775 99999999999999999999999999999 78899999999999999999999998876532 2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhc----cCCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHhcCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSL 166 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~----~~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~l 166 (534)
.+.++|||+||++|+.|+.+.++.+.. ...+.+..++||.....+...+. .+++|+|+||++|++++.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 356899999999999999999998763 24577889999998888777764 4899999999999999876434568
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcC-------CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccc----cc
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-------ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KI 235 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~-------~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~----~~ 235 (534)
.++++||+||||++++++|...+..++..++ ..+|+++||||+++.+..++..++.++..+.+.... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8999999999999999999999888877653 367999999999999999999999988777664322 22
Q ss_pred CCCceEEEEEech-hhHHHHHHHHHHHh---cCCCCeEEEEEcChhhHHHHHHHHHHc---CCCceeecCCCCHHHHHHH
Q 009477 236 SPDLKLAFFTLRQ-EEKHAALLYMIREH---ISSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIH 308 (534)
Q Consensus 236 ~~~~~~~~~~~~~-~~k~~~L~~~l~~~---~~~~~~~IVF~~t~~~~e~l~~~L~~~---~~~~~~l~g~~~~~~r~~~ 308 (534)
...+.+.+..... ..+...++..+... ...+.++||||+|+.+++.+++.|... ++.+..+||++++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 3345555555443 22332333332221 145789999999999999999999987 8999999999999999999
Q ss_pred HHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCC
Q 009477 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (534)
Q Consensus 309 ~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~ 388 (534)
++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||+|+.|.|++|+++.|..++..++...+.+
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred cc
Q 009477 389 IR 390 (534)
Q Consensus 389 ~~ 390 (534)
+.
T Consensus 414 ~~ 415 (579)
T 3sqw_A 414 IA 415 (579)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.1e-58 Score=488.93 Aligned_cols=364 Identities=31% Similarity=0.531 Sum_probs=181.2
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
..+|++++|++.++++|.++||..|+|+|.+++|.++.+ +++++.|+||||||++|++|+++.+.... .++++|||
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--~~~~~lil 168 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--KYPQCLCL 168 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--CSCCEEEE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--CCCcEEEE
Confidence 358999999999999999999999999999999999987 89999999999999999999998876542 35589999
Q ss_pred cCcHHHHHHHHHHHHHhhcc-CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 100 SPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
+||++|+.|+.+.++.++.. .++.+....++....... ...++|+|+||++|.+++.+.+.+++.++++||+||||
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 99999999999999998876 467888888876543321 34678999999999999977666788999999999999
Q ss_pred cccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEech-hhHHHHHH
Q 009477 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALL 256 (534)
Q Consensus 179 ~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~ 256 (534)
++++ .+|...+..+...++.++|++++|||++..+..++..++.+|..+.+.........+.+.+..+.. ..+...+.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHH
Confidence 9987 689999999999999999999999999999999999999999998887776666666666666654 45666777
Q ss_pred HHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCC
Q 009477 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (534)
Q Consensus 257 ~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~ 336 (534)
.++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 326 ~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 326 NLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 766644 467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------ChhhhHHhhccCCCCCCcceEEEEecccc-HHHHHHHHHHhCCCccCC
Q 009477 337 NVINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAA 392 (534)
Q Consensus 337 ~VI~~~~p~------s~~~~~qr~GR~gR~g~~G~~i~~~~~~e-~~~~~~l~~~~~~~~~~~ 392 (534)
+||+||+|. +...|+||+||+||+|+.|.+++|+++.+ ..++..++..++..+...
T Consensus 404 ~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 999999995 56899999999999999999999998765 677777777777665544
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2e-57 Score=471.22 Aligned_cols=369 Identities=32% Similarity=0.549 Sum_probs=189.4
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li 98 (534)
.+...+|++++|++.+++++...||..|+|+|+++++.++.++++++.+|||||||++|++|+++.+... ..+.++||
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~li 94 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALM 94 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEE
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEE
Confidence 3556789999999999999999999999999999999999999999999999999999999999887653 24668999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
++||++|+.|+.+.++.+....++++..++|+.........+. +++|+|+||++|.+.+.. ..+.+.++++||+||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEAD 172 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHH
T ss_pred EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChH
Confidence 9999999999999999998888999999999998877665554 689999999999998876 45778899999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhh-HHHHHHH
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLY 257 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~ 257 (534)
++.+.+|...+..++..++...|++++|||+++.+..+...++.+|..+...........+...+..+.... +...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877665555555555555555443 5566666
Q ss_pred HHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCE
Q 009477 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (534)
Q Consensus 258 ~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~ 337 (534)
++... ..+++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 253 ~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 253 LYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCE
Confidence 66543 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCC
Q 009477 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 338 VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p 393 (534)
||++++|.++..|+||+||+||.|++|.|+++++++|...+..++.+++.++...|
T Consensus 331 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 331 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 99999999999999999999999999999999999999999888888877665544
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.8e-55 Score=477.16 Aligned_cols=368 Identities=32% Similarity=0.510 Sum_probs=310.5
Q ss_pred CCcCCCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CCCe
Q 009477 23 GGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGV 94 (534)
Q Consensus 23 ~~f~~l~----l~~~l~~~l~~~g~~~~~~~Q~~ai~~il--~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--~~g~ 94 (534)
.+|+++. |++.+++++...||..|+|+|.++++.++ .++|+++.||||||||++|++|+++.+..... ..+.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3566654 99999999999999999999999999999 67899999999999999999999999876532 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcc----CCCeEEEEEcCCCHHHHHHHH-hCCCCEEEECchHHHHHHHhcCCCCCCCe
Q 009477 95 RALILSPTRDLALQTLKFTKELGRY----TDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (534)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~~----~~l~~~~~~gg~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~ 169 (534)
++|||+||++|+.|+.+.++.+... ....+..++||.....+...+ ..+++|+|+||++|++++.+.....++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999887532 356788899999888777666 45899999999999998876434468889
Q ss_pred eEEEEcCCCccccCChHHHHHHHHHhcC-------CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecccc----ccCCC
Q 009477 170 EYVVFDEADCLFGMGFAEQLHKILGQLS-------ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KISPD 238 (534)
Q Consensus 170 ~~iViDEah~l~~~~~~~~~~~i~~~~~-------~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~----~~~~~ 238 (534)
++||+||||++++++|...+..++..++ ..+|+++||||+|+.+..++..++.++..+.+.... .....
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 9999999999999999999888876653 377999999999999999999999988777664322 22334
Q ss_pred ceEEEEEech-hhHHHHHHHHHHHh---cCCCCeEEEEEcChhhHHHHHHHHHHc---CCCceeecCCCCHHHHHHHHHH
Q 009477 239 LKLAFFTLRQ-EEKHAALLYMIREH---ISSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSR 311 (534)
Q Consensus 239 ~~~~~~~~~~-~~k~~~L~~~l~~~---~~~~~~~IVF~~t~~~~e~l~~~L~~~---~~~~~~l~g~~~~~~r~~~~~~ 311 (534)
+.+.+..... ..+...++..+... ...+.++||||+|+..++.+++.|... ++.+..+||++++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 4555554443 22333333333222 246789999999999999999999987 8999999999999999999999
Q ss_pred HhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCcc
Q 009477 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 312 F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~ 390 (534)
|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|+.|.|++|+++.|..++..++...+.++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887776554
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.4e-53 Score=427.33 Aligned_cols=335 Identities=35% Similarity=0.606 Sum_probs=292.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
|++.+.+++.++||..|+|+|+++++.+++++++++.+|||||||++|++|+++. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998874 46799999999999999
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHH
Q 009477 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (534)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~ 189 (534)
.+.+++++...++++..++|+.....+...+. +++|+|+||++|.+.+.. ..+.+.++++||+||||++.++++...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHH
Confidence 99999999888999999999998887776654 499999999999998875 4567889999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeE
Q 009477 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (534)
Q Consensus 190 ~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~ 269 (534)
..++...+...+++++|||+|+.+......++.++..+... .....+...+..+....+. ....+.. ..++++
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 223 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRE--NKDKGV 223 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHT--CCCSSE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHh--CCCCcE
Confidence 99999999999999999999999999999998888766432 2234455666665544332 2344443 367899
Q ss_pred EEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhh
Q 009477 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (534)
Q Consensus 270 IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~ 349 (534)
||||+++++++.+++.|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..
T Consensus 224 lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~ 299 (337)
T 2z0m_A 224 IVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRT 299 (337)
T ss_dssp EEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHH
Confidence 999999999999998886 5789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhC
Q 009477 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (534)
Q Consensus 350 ~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~ 386 (534)
|+||+||+||.|++|.+++|+. .|...+.+++..++
T Consensus 300 ~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 300 YIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred hhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999 78777777765554
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-53 Score=450.71 Aligned_cols=362 Identities=26% Similarity=0.483 Sum_probs=267.6
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
.|...++++.+++.+.+.||..|+++|+++++.++++ +++++.++||||||++|++|+++.+... ..+.++||++|
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P 197 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAP 197 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEEC
Confidence 4666789999999999999999999999999999998 9999999999999999999999988654 23568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
+++|+.|+.+.++.++...++.+....++..... ...+++|+|+||++|++.+.. ..+.+.++++||+||||++.
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhc
Confidence 9999999999999998877777776666544322 234789999999999998876 56778999999999999998
Q ss_pred c-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEec-hhhHHHHHHHHH
Q 009477 182 G-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMI 259 (534)
Q Consensus 182 ~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~L~~~l 259 (534)
+ .++...+..+...++.+.|++++|||+++.+..+...++.++..+.+.........+...+..+. ...+...+..++
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHH
Confidence 7 68999999999999999999999999999999999999999988877666655566666666654 345666666666
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 543 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CChhhhHHhhccCCCCCCcceEEEEecc-ccHHHHHHHHHHhCCCccCCCC
Q 009477 340 NWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAPS 394 (534)
Q Consensus 340 ~~~~p------~s~~~~~qr~GR~gR~g~~G~~i~~~~~-~e~~~~~~l~~~~~~~~~~~p~ 394 (534)
++|+| .++..|+||+||+||.|++|.+++|+.+ ++...+..++.+++..+...|.
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999 7899999999999999999999999985 5667788888888887776553
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.1e-50 Score=437.48 Aligned_cols=342 Identities=18% Similarity=0.244 Sum_probs=279.6
Q ss_pred CcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 24 GFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.|+++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. +.++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 35568999999999998 69999999999999999999999999999999999999999752 3479999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH------hCCCCEEEECchHHH------HHHHhcCCCCCCCee
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGRLM------HHLSEVEDMSLKSVE 170 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~------~~~~~IiV~Tp~~l~------~~l~~~~~~~l~~~~ 170 (534)
++|+.|+.+.++.+ ++.+..+.|+....+....+ ..+++|+|+||++|. +.+.. ...+.+++
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~ 167 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFT 167 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCc
Confidence 99999999999887 48889999988776554322 457899999999874 23332 24577899
Q ss_pred EEEEcCCCccccCC--hHHHHHH--HHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEe
Q 009477 171 YVVFDEADCLFGMG--FAEQLHK--ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL 246 (534)
Q Consensus 171 ~iViDEah~l~~~~--~~~~~~~--i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (534)
+|||||||+++++| |...+.. ++....++.+++++|||+++.+...+...+..+....+... ...+++...+...
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQK 246 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEEC
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeC
Confidence 99999999999887 5544433 34444457899999999999888777777665443333221 2233443333322
Q ss_pred c--hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC
Q 009477 247 R--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (534)
Q Consensus 247 ~--~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td 324 (534)
. ...+...|..++... ..++++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 247 ~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 133455566665432 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 325 v~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
++++|+|+|++++||+|++|.+...|+||+||+||.|++|.|+.++++.|...+..+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887765543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-49 Score=427.46 Aligned_cols=338 Identities=21% Similarity=0.331 Sum_probs=280.3
Q ss_pred CCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 23 GGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..|++++|++.+.+.|++ .||..|+|+|.++++.+++|+|+++.+|||||||++|++|++.. +..+||++|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 479999999999999998 89999999999999999999999999999999999999998853 246899999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH----HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
+++|+.|+.+.++.+ ++.+..+.|+....++.. ...+.++|+|+||++|...... ..+...++++||||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEA 148 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCc
Confidence 999999999988876 478888888877665432 2345799999999999632111 1244578999999999
Q ss_pred CccccCC--hHHH---HHHHHHhcCCCCcEEEEEeeCCHHHHHHHH--hcCCCCeEEEeccccccCCCceEEEEEechhh
Q 009477 178 DCLFGMG--FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (534)
Q Consensus 178 h~l~~~~--~~~~---~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~--~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (534)
|+++++| |... +..+...+| +.+++++|||+++....... ..+.+|..+.... ..+++ .+.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l--~~~v~~~~~ 222 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYMLMEKFK 222 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC---CCTTE--EEEEEECSS
T ss_pred cccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC---CCCce--EEEEEeCCC
Confidence 9999887 5333 334455554 68899999999987655333 3345555443221 22333 344445566
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
+...+...+.+. +++++||||+|+..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 778888888765 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 331 Dip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
|+|++++||++++|.+...|.||+||+||.|++|.++.++++.|...+..+
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766554
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.6e-51 Score=425.95 Aligned_cols=325 Identities=20% Similarity=0.265 Sum_probs=265.8
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 009477 34 VFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (534)
Q Consensus 34 l~~~l~~-~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (534)
+.+.+++ .|| +|+|+|.++++.+++|+|+++.||||||||++|++|++..+. .+.++|||+||++|+.|+.+.
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHH
Confidence 3444444 377 699999999999999999999999999999999999887662 467899999999999999999
Q ss_pred HHHhhccCCCeEEEEEcCCCH---HHHHHHHhCC-CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc------
Q 009477 113 TKELGRYTDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG------ 182 (534)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~---~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~------ 182 (534)
++.++. .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.+
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhh
Confidence 999988 88999999999988 5555566554 99999999999988874 6678999999999986653
Q ss_pred -----CChHHH-HHHHHHhcC-----------CCCcEEEEEee-CCHHHH-HHHHhcCCCCeEEEeccccccCCCceEEE
Q 009477 183 -----MGFAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALA-EFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (534)
Q Consensus 183 -----~~~~~~-~~~i~~~~~-----------~~~q~ll~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 243 (534)
++|... +..++..++ ...|++++||| +|..+. .+....+. +.+.........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 677777 788888776 78999999999 555433 22222221 12222233344566665
Q ss_pred EEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCce-eecCCCCHHHHHHHHHHHhcCCcEEEEE
Q 009477 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV 322 (534)
Q Consensus 244 ~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~-~l~g~~~~~~r~~~~~~F~~g~~~iLI~ 322 (534)
..+ ++...|..++... ++++||||+++.+++.+++.|...|+.+. .+||+ +|+ ++.|++|+.+||||
T Consensus 236 ~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 236 ISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp ESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred ecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 554 4566677777763 48999999999999999999999999998 88984 344 99999999999999
Q ss_pred ----eCcccccCCCCC-CCEEEEcCCC--CChhhhHHhhccCCCCC----CcceEEEEeccccHHHHHHHHHHhC
Q 009477 323 ----TDVAARGIDIPL-LDNVINWDFP--PKPKIFVHRVGRAARAG----RTGTAFSFVTSEDMAYLLDLHLFLS 386 (534)
Q Consensus 323 ----Tdv~a~GlDip~-v~~VI~~~~p--~s~~~~~qr~GR~gR~g----~~G~~i~~~~~~e~~~~~~l~~~~~ 386 (534)
|+++++|+|+|+ +++||+||+| .++..|+||+||+||.| +.|.+++++ +|...+..++..++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 589999999 66677777776666
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.9e-48 Score=420.85 Aligned_cols=324 Identities=20% Similarity=0.245 Sum_probs=261.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..|| .|||+|..++|.+++|+ |+.++||+|||++|.+|++.... .|++++||+||++||.|.++++..+.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-----~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-----TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 89999999999999998 99999999999999999985433 2567999999999999999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-cCC--------
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GMG-------- 184 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~~~-------- 184 (534)
.++++++++||.+...+. ...+++|+|||||+| ++++... ..+.+..+.++|+||||+|+ +++
T Consensus 151 lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 999999999998765543 335799999999999 7776542 23567899999999999987 653
Q ss_pred -------hHHHHHHHHHhcC---------CCCcEE-----------------EEEeeCCHH---HHHH--HHhcCC-CCe
Q 009477 185 -------FAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSA---LAEF--AKAGLR-DPH 225 (534)
Q Consensus 185 -------~~~~~~~i~~~~~---------~~~q~l-----------------l~SAT~~~~---~~~~--~~~~l~-~~~ 225 (534)
|...+..|+..++ ..+|++ +||||++.. +... ++.++. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 7789999999997 478888 999998743 3222 222222 221
Q ss_pred EEE-------ec-----------------------------cccc-----------------------------------
Q 009477 226 LVR-------LD-----------------------------VDTK----------------------------------- 234 (534)
Q Consensus 226 ~i~-------~~-----------------------------~~~~----------------------------------- 234 (534)
++. ++ .+..
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 110 00 0000
Q ss_pred ---------cCCCce---EEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCH
Q 009477 235 ---------ISPDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (534)
Q Consensus 235 ---------~~~~~~---~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~ 302 (534)
..+... ..++.+...+|..+|+..+.+....+.++||||+|+..++.++..|...|+++..+||++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 000000 11344567789999999887655567899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCcccccCCCC--------CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip--------~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
.+|..+.+.|+.| .|+||||+|+||+||+ ++.+||||++|.+...|+||+||+||+|.+|.+++|++.+|
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887777666665 5999999999999999 78899999999999999999999999999999999999876
Q ss_pred H
Q 009477 375 M 375 (534)
Q Consensus 375 ~ 375 (534)
.
T Consensus 547 ~ 547 (844)
T 1tf5_A 547 E 547 (844)
T ss_dssp S
T ss_pred H
Confidence 3
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.4e-47 Score=410.66 Aligned_cols=334 Identities=19% Similarity=0.244 Sum_probs=209.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
++..+|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++.++...
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34567999999999999999999999999999999999999998877544447789999999999999999999998888
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCChHHHHH-HHHHh---
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQ--- 195 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~~~~~~~-~i~~~--- 195 (534)
++++..++|+.....++..+..+++|+|+||++|.+++.. ..+ .+.++++||+||||++.+.+....+. ..+..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh-CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 9999999999887777777777899999999999999876 445 78999999999999999887544432 22222
Q ss_pred -cCCCCcEEEEEeeCCH-----------HHHHHHHh------------------cCCCCeEEEeccccccCCCce-----
Q 009477 196 -LSENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPDLK----- 240 (534)
Q Consensus 196 -~~~~~q~ll~SAT~~~-----------~~~~~~~~------------------~l~~~~~i~~~~~~~~~~~~~----- 240 (534)
..+..+++++|||++. .+..+... +...|................
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 1456899999999953 11111111 111121111111000000000
Q ss_pred --------------E-EEEE------------------------------------------------------------
Q 009477 241 --------------L-AFFT------------------------------------------------------------ 245 (534)
Q Consensus 241 --------------~-~~~~------------------------------------------------------------ 245 (534)
. .+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 0000
Q ss_pred ----------------------------------------------echhhHHHHHHHHHHHhc--CCCCeEEEEEcChh
Q 009477 246 ----------------------------------------------LRQEEKHAALLYMIREHI--SSDQQTLIFVSTKH 277 (534)
Q Consensus 246 ----------------------------------------------~~~~~k~~~L~~~l~~~~--~~~~~~IVF~~t~~ 277 (534)
.....|...|..++.+.. ..+.++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 001335556666666544 56789999999999
Q ss_pred hHHHHHHHHHHc------------CCCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEeCcccccCCCCCCCEEEEcCCC
Q 009477 278 HVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (534)
Q Consensus 278 ~~e~l~~~L~~~------------~~~~~~l~g~~~~~~r~~~~~~F~~-g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p 344 (534)
.++.+++.|... |.....+||++++.+|..++++|++ |+++|||||+++++|+|+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4555666788999999999999999 999999999999999999999999999999
Q ss_pred CChhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 345 ~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
+++..|+||+|| ||. ++|.++.+++..+...
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999 998 8899999999876543
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=7e-47 Score=434.37 Aligned_cols=321 Identities=20% Similarity=0.248 Sum_probs=263.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..||. |||+|++++|.++.|+|+++.|+||||||++|++|+++.+. .+.++|||+||++|+.|+.+.++.++ .
T Consensus 74 ~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----~~~~~Lil~PtreLa~Q~~~~l~~l~-~ 146 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLERLQKLA-D 146 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHHHHTTS-C
T ss_pred hcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----cCCeEEEEechHHHHHHHHHHHHHhh-C
Confidence 46884 99999999999999999999999999999999988887762 46789999999999999999999988 7
Q ss_pred CCCeEEEEEcCCCH---HHHHHHHhCC-CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc----------c-CC
Q 009477 120 TDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF----------G-MG 184 (534)
Q Consensus 120 ~~l~~~~~~gg~~~---~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~----------~-~~ 184 (534)
.++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++. + +|
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 78999999999987 6666677665 99999999999988874 667899999999997655 4 78
Q ss_pred hHHH-HHHHHHhcC-----------CCCcEEEEEee-CCHHHH-HHHHhcCCCCeEEEeccccccCCCceEEEEEechhh
Q 009477 185 FAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALA-EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (534)
Q Consensus 185 ~~~~-~~~i~~~~~-----------~~~q~ll~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (534)
|..+ +..++..++ ..+|+++|||| .|..+. .+....+. +.+.........+.+.+..+ +
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 8888 888888877 88999999999 555443 23333322 22333333445666666555 4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCce-eecCCCCHHHHHHHHHHHhcCCcEEEEE----eCc
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV----TDV 325 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~-~l~g~~~~~~r~~~~~~F~~g~~~iLI~----Tdv 325 (534)
+...|..++... ++++||||+++..++.++..|...|+.+. .+||+ |++ ++.|++|+.+|||| |++
T Consensus 297 k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 297 SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp CHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 666777777763 48999999999999999999999999998 99982 555 99999999999999 999
Q ss_pred ccccCCCCC-CCEEEEcCCCC-----------------------------------------------------------
Q 009477 326 AARGIDIPL-LDNVINWDFPP----------------------------------------------------------- 345 (534)
Q Consensus 326 ~a~GlDip~-v~~VI~~~~p~----------------------------------------------------------- 345 (534)
+++|+|+|+ |++|||||+|.
T Consensus 368 larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~ 447 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRG 447 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCS
T ss_pred eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccce
Confidence 999999999 99999999998
Q ss_pred -------------ChhhhHHhhccCCCCCCcc--eEEEEeccccHHHHHHHHHHhC
Q 009477 346 -------------KPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLS 386 (534)
Q Consensus 346 -------------s~~~~~qr~GR~gR~g~~G--~~i~~~~~~e~~~~~~l~~~~~ 386 (534)
++.+|+||+|||||.|..| .+++++..+|...+..++..++
T Consensus 448 l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 448 VVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999965432 3455555577777777776654
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.9e-46 Score=404.60 Aligned_cols=333 Identities=20% Similarity=0.238 Sum_probs=236.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeE
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (534)
+|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++.++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 59999999999999999999999999999999999999998876444477899999999999999999999988889999
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCChHHH-HHHHHHhc-----C
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQL-----S 197 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~~~~~-~~~i~~~~-----~ 197 (534)
..++|+.....++..+..+++|+|+||++|.+++.. ..+ .+.++++||+||||++.+.+.... +...+... .
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN-GAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT-SSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc-CcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 999999977776666677899999999999999886 334 788999999999999998763333 33333332 2
Q ss_pred CCCcEEEEEeeCCHH-----------HHHHHHhcCCCCeEEEecccc----ccCCCceEEEEEec---------------
Q 009477 198 ENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVDT----KISPDLKLAFFTLR--------------- 247 (534)
Q Consensus 198 ~~~q~ll~SAT~~~~-----------~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~~~~~--------------- 247 (534)
...+++++|||++.. +..+.. .+..+......... .........+..+.
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 567999999999541 111111 12211111110000 00000000111000
Q ss_pred --------------------------------------------------------------------------------
Q 009477 248 -------------------------------------------------------------------------------- 247 (534)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (534)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred -----------------------------------------------hhhHHHHHHHHHHHhc--CCCCeEEEEEcChhh
Q 009477 248 -----------------------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHH 278 (534)
Q Consensus 248 -----------------------------------------------~~~k~~~L~~~l~~~~--~~~~~~IVF~~t~~~ 278 (534)
...|...|..++.+.. .++.++||||+++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 1235556666665543 346899999999999
Q ss_pred HHHHHHHHHHcC------------CCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEeCcccccCCCCCCCEEEEcCCCC
Q 009477 279 VEFLNVLFREEG------------LEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPP 345 (534)
Q Consensus 279 ~e~l~~~L~~~~------------~~~~~l~g~~~~~~r~~~~~~F~~-g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~ 345 (534)
++.++..|...+ .....+||+|++.+|..++++|++ |+++|||||+++++|+|+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999999864 334455669999999999999999 9999999999999999999999999999999
Q ss_pred ChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 346 KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 346 s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
|+..|+||+|| ||. +.|.++.|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 998 88999999998876555433
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-45 Score=412.66 Aligned_cols=338 Identities=22% Similarity=0.273 Sum_probs=266.0
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
...+|+++||++.+.+.+.+.||..|+|+|.++++. +.++++++++||||||||+++.+|+++.+... |.+++|+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i 81 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYV 81 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEE
Confidence 446899999999999999999999999999999998 78899999999999999999999999887642 5689999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+|+++|+.|+++.++.+.. .+++++.++|+...... ...+++|+|+||+++..++.. ....++++++||+||+|+
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhh
Confidence 9999999999998866653 47899999987654332 124789999999999998876 334488999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEE------------EEEec
Q 009477 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA------------FFTLR 247 (534)
Q Consensus 180 l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~------------~~~~~ 247 (534)
+.+.++...+..++..++ +.|++++|||+++. ..++... ..+ .+.... ...+ +... .....
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~-~~~~~~--r~~~-l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAE-PVATNW--RPVP-LIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCE-EEECCC--CSSC-EEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCC-ccCCCC--CCCC-ceEEEEecCCcccceeeecCc
Confidence 998888888888888877 79999999999752 4444433 211 111111 1111 1111 11111
Q ss_pred hh----hHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcC---------------------------------
Q 009477 248 QE----EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG--------------------------------- 290 (534)
Q Consensus 248 ~~----~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~--------------------------------- 290 (534)
.. .........+.+.+..++++||||+++++++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 00 00122334444444578999999999999999999998642
Q ss_pred ---CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----cC-------CCCChhhhHHhhcc
Q 009477 291 ---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-------FPPKPKIFVHRVGR 356 (534)
Q Consensus 291 ---~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~~-------~p~s~~~~~qr~GR 356 (534)
..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 24789999999999999999999999999999999999999999999999 99 89999999999999
Q ss_pred CCCCCC--cceEEEEecccc
Q 009477 357 AARAGR--TGTAFSFVTSED 374 (534)
Q Consensus 357 ~gR~g~--~G~~i~~~~~~e 374 (534)
|||.|. .|.|+.+++..+
T Consensus 390 aGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGG
T ss_pred cCCCCCCCCceEEEEeCCch
Confidence 999884 799999998776
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.6e-47 Score=420.86 Aligned_cols=343 Identities=21% Similarity=0.260 Sum_probs=229.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 009477 35 FRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (534)
Q Consensus 35 ~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (534)
..++..+||..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999998876543334679999999999999999999
Q ss_pred HhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCChHH-HHHHH
Q 009477 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAE-QLHKI 192 (534)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~~~~-~~~~i 192 (534)
+++...++++..++||.....++..+..+++|+|+||++|.+.+.. ..+ .+.++++|||||||++.+..... .+...
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT-TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc-CcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 9988889999999999877666666667899999999999999886 334 68899999999999998665322 22222
Q ss_pred HHh-----cCCCCcEEEEEeeCC-------HH-HHHHHH---------------------hcCCCCeEEEecccccc---
Q 009477 193 LGQ-----LSENRQTLLFSATLP-------SA-LAEFAK---------------------AGLRDPHLVRLDVDTKI--- 235 (534)
Q Consensus 193 ~~~-----~~~~~q~ll~SAT~~-------~~-~~~~~~---------------------~~l~~~~~i~~~~~~~~--- 235 (534)
+.. .+...+++++|||+. .. +..+.. .+...|...........
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 222 246789999999996 11 111111 11112211110000000
Q ss_pred --------------------------------------------------------------------------------
Q 009477 236 -------------------------------------------------------------------------------- 235 (534)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (534)
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence
Q ss_pred ----------------------------CCCceEEEEE-------------e---chhhHHHHHHHHHHHhc--CCCCeE
Q 009477 236 ----------------------------SPDLKLAFFT-------------L---RQEEKHAALLYMIREHI--SSDQQT 269 (534)
Q Consensus 236 ----------------------------~~~~~~~~~~-------------~---~~~~k~~~L~~~l~~~~--~~~~~~ 269 (534)
...+.+.+.. . ....|...|..++.+.. .+++++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 0000000000 0 12346667777777653 356899
Q ss_pred EEEEcChhhHHHHHHHHHHcC----CCceee--------cCCCCHHHHHHHHHHHhc-CCcEEEEEeCcccccCCCCCCC
Q 009477 270 LIFVSTKHHVEFLNVLFREEG----LEPSVC--------YGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLD 336 (534)
Q Consensus 270 IVF~~t~~~~e~l~~~L~~~~----~~~~~l--------~g~~~~~~r~~~~~~F~~-g~~~iLI~Tdv~a~GlDip~v~ 336 (534)
||||+++..++.+++.|...+ +.+..+ ||+|++.+|..++++|++ |+.+|||||+++++|+|+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999987 888888 559999999999999998 9999999999999999999999
Q ss_pred EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHH
Q 009477 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (534)
Q Consensus 337 ~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~ 380 (534)
+||+||+|.++..|+||+|| ||+ +.|.++.+++..+......
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHH
Confidence 99999999999999999999 998 7899999999877654433
No 25
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5.5e-46 Score=402.89 Aligned_cols=341 Identities=20% Similarity=0.261 Sum_probs=243.9
Q ss_pred CCCCCcCCCCCCHHHHHHHHH-----CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCe
Q 009477 20 SKSGGFESLNLSPNVFRAIKR-----KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~-----~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~ 94 (534)
+++.+++++ | ++.+..+.+ .|. .|+|+|..++|.++.|+ |+.++||||||++|++|++.... .|+
T Consensus 47 ~~g~~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----~g~ 116 (853)
T 2fsf_A 47 EKGEVLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----TGK 116 (853)
T ss_dssp HTTCCHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----TSS
T ss_pred HcCCChhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----cCC
Confidence 345556664 3 334433333 465 69999999999999998 99999999999999999986543 256
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcC-----CCCCCC
Q 009477 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKS 168 (534)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~l~~ 168 (534)
+++||+||++||.|.++++..++++.++++++++||.+... +.+..+++|+|||||+| ++++...- .+.+.+
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~ 194 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRK 194 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCS
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccC
Confidence 79999999999999999999999999999999999987643 34445799999999999 88887521 256789
Q ss_pred eeEEEEcCCCccc-cC---------------ChHHHHHHHHHhcCC--------------------CCcEE---------
Q 009477 169 VEYVVFDEADCLF-GM---------------GFAEQLHKILGQLSE--------------------NRQTL--------- 203 (534)
Q Consensus 169 ~~~iViDEah~l~-~~---------------~~~~~~~~i~~~~~~--------------------~~q~l--------- 203 (534)
+.++|+||||+|+ +. +|...+..|+..++. .+|++
T Consensus 195 l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~ 274 (853)
T 2fsf_A 195 LHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLI 274 (853)
T ss_dssp CCEEEESCHHHHTTTTTTCEEEEEEC------------------------------------------------------
T ss_pred CcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHH
Confidence 9999999999998 43 367788888888874 56654
Q ss_pred ---------------EEEeeCCHHHHHH---H--HhcCC--------C-------------------------C----eE
Q 009477 204 ---------------LFSATLPSALAEF---A--KAGLR--------D-------------------------P----HL 226 (534)
Q Consensus 204 ---------------l~SAT~~~~~~~~---~--~~~l~--------~-------------------------~----~~ 226 (534)
+||||.+.....+ . ...+. + + ..
T Consensus 275 e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~ 354 (853)
T 2fsf_A 275 EELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEG 354 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhccc
Confidence 8999976421111 0 11110 0 0 11
Q ss_pred EEeccccccCCCce-----------------------------------------------EEEEEechhhHHHHHHHHH
Q 009477 227 VRLDVDTKISPDLK-----------------------------------------------LAFFTLRQEEKHAALLYMI 259 (534)
Q Consensus 227 i~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~k~~~L~~~l 259 (534)
+.+..+......+. ..++.+...+|..++...+
T Consensus 355 v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i 434 (853)
T 2fsf_A 355 VQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDI 434 (853)
T ss_dssp --CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHH
T ss_pred ceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHH
Confidence 11111110000011 1134556788999999999
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC----
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---- 335 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v---- 335 (534)
......+.++||||+|+..++.++..|...|+++.++||++.+.++..+.+.|+.| .|+|||++|+||+||+..
T Consensus 435 ~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~ 512 (853)
T 2fsf_A 435 KERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQ 512 (853)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHH
T ss_pred HHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchH
Confidence 77666788999999999999999999999999999999999888888888899988 599999999999999974
Q ss_pred ---------------------------------CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 336 ---------------------------------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 336 ---------------------------------~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
.+||++++|.|...|.||+||+||+|.+|.+++|++..|
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 513 AEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999876
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-46 Score=418.79 Aligned_cols=336 Identities=22% Similarity=0.275 Sum_probs=270.7
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
.+|+++||++.+.+.+++.||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+... |.+++|++|
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P 76 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVP 76 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECS
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcC
Confidence 3699999999999999999999999999999998 88899999999999999999999999887743 568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
+++|+.|+++.++.+.. .+++++.++|+...... ...+++|+|+||+++..++.. ....++++++||+||+|.+.
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccC
Confidence 99999999998876654 47899999997654432 134789999999999988876 34458899999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEE-----Ee-c-----hhh
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-----TL-R-----QEE 250 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~-----~~-~-----~~~ 250 (534)
+.++...+..++..++.+.|++++|||+++. ..+... +..+ .+... .... .+...+. .. . ...
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~-l~~~-~~~~~--~rp~-~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEW-LNAE-LIVSD--WRPV-KLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHH-TTEE-EEECC--CCSS-EEEEEEEETTEEEETTSCEEECSS
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHH-hCCc-ccCCC--CCCC-cceEEEEeCCeeeccccchhhhhH
Confidence 8888999999998887789999999999753 444443 3211 11111 1111 1111111 01 1 122
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc------------------C---------------CCceeec
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------G---------------LEPSVCY 297 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~------------------~---------------~~~~~l~ 297 (534)
....+.+. +.+++++||||++++.++.++..|.+. + ..+..+|
T Consensus 226 ~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 226 WEELVYDA----IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp TTHHHHHH----HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHH----HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 23333333 346799999999999999999988753 1 2478999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----cC----CCCChhhhHHhhccCCCCC--CcceEE
Q 009477 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD----FPPKPKIFVHRVGRAARAG--RTGTAF 367 (534)
Q Consensus 298 g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~~----~p~s~~~~~qr~GR~gR~g--~~G~~i 367 (534)
|++++.+|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 76 5899999999999999998 479999
Q ss_pred EEeccccHHH
Q 009477 368 SFVTSEDMAY 377 (534)
Q Consensus 368 ~~~~~~e~~~ 377 (534)
.++++.+...
T Consensus 382 ~l~~~~~~~~ 391 (720)
T 2zj8_A 382 IVSTSDDPRE 391 (720)
T ss_dssp EECSSSCHHH
T ss_pred EEecCccHHH
Confidence 9999887443
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.2e-45 Score=414.07 Aligned_cols=335 Identities=19% Similarity=0.238 Sum_probs=216.5
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..|+..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++.++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 45899999999999999999999999999999999999999999988764344778999999999999999999999888
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCChHHHHH-HHHHhc-
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQL- 196 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~~~~~~~-~i~~~~- 196 (534)
.++++..++|+.....+...+..+++|+|+||++|.+.+.. ..+ .+.++++||+||||++.+.+....+. ..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS-SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh-ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 88999999999987777777778899999999999999886 445 78899999999999999876433332 333221
Q ss_pred ---CCCCcEEEEEeeCCH-----------HHHHHHH------------------hcCCCCeEEEeccccccCCC------
Q 009477 197 ---SENRQTLLFSATLPS-----------ALAEFAK------------------AGLRDPHLVRLDVDTKISPD------ 238 (534)
Q Consensus 197 ---~~~~q~ll~SAT~~~-----------~~~~~~~------------------~~l~~~~~i~~~~~~~~~~~------ 238 (534)
.+..+++++|||++. .+..+.. .++..|..............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 556899999999852 2222111 11122221111111000000
Q ss_pred ---------------------ceEEEEE-------e--------------------------------------------
Q 009477 239 ---------------------LKLAFFT-------L-------------------------------------------- 246 (534)
Q Consensus 239 ---------------------~~~~~~~-------~-------------------------------------------- 246 (534)
.....+. +
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000000 0
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHHhc--CCCCeEEEEEcCh
Q 009477 247 ------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (534)
Q Consensus 247 ------------------------------------------------~~~~k~~~L~~~l~~~~--~~~~~~IVF~~t~ 276 (534)
....|...|..++.+.. .++.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 01224555666666533 5678999999999
Q ss_pred hhHHHHHHHHHHc------------CCCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEeCcccccCCCCCCCEEEEcCC
Q 009477 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (534)
Q Consensus 277 ~~~e~l~~~L~~~------------~~~~~~l~g~~~~~~r~~~~~~F~~-g~~~iLI~Tdv~a~GlDip~v~~VI~~~~ 343 (534)
..++.++..|... |.....+||++++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 5556677889999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 344 p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
|+|+..|+||+|| ||. +.|.++.|++..+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999 998 8899999999876543
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-46 Score=425.79 Aligned_cols=331 Identities=17% Similarity=0.199 Sum_probs=264.9
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
..|+.+++++.+...+...++..|+|+|.++++.++.|++++++|+||||||++|.+|+++.+. .|.+++|++||
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-----~g~rvlvl~Pt 236 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----NKQRVIYTSPI 236 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEcCc
Confidence 4677888888888777777888899999999999999999999999999999999999998874 36789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
++|+.|+++.++.+.. .++.++|+.+. ..+++|+|+||++|.+++.. ....+.++++|||||||++.+
T Consensus 237 raLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccc
Confidence 9999999999888763 67778887763 35689999999999999886 445588999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEeeCCHH--HHHHHHhcCCCCeEEEeccccccCCCceEEEEEec---------h---
Q 009477 183 MGFAEQLHKILGQLSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------Q--- 248 (534)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---------~--- 248 (534)
+++...+..++..++...|+++||||+|+. +..+.......|..+...... ...+...++... .
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccc
Confidence 999999999999999999999999999874 446666666666544333221 111222221100 0
Q ss_pred -------------------------------------------hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHH
Q 009477 249 -------------------------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVL 285 (534)
Q Consensus 249 -------------------------------------------~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~ 285 (534)
..+...++..+.. ....++||||+++..++.++..
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHH
Confidence 1122223333332 2456999999999999999988
Q ss_pred HHHcCCC---------------------------------------ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc
Q 009477 286 FREEGLE---------------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (534)
Q Consensus 286 L~~~~~~---------------------------------------~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~ 326 (534)
|...++. +..+||+|++..|..+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 7543222 6889999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCCC--------ChhhhHHhhccCCCCC--CcceEEEEecccc
Q 009477 327 ARGIDIPLLDNVINWDFPP--------KPKIFVHRVGRAARAG--RTGTAFSFVTSED 374 (534)
Q Consensus 327 a~GlDip~v~~VI~~~~p~--------s~~~~~qr~GR~gR~g--~~G~~i~~~~~~e 374 (534)
++|+|+|++++||+++.|. ++..|+||+||+||.| ..|.|+.++.+..
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 9999999999999887744 5667999999999999 5788988888763
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.2e-46 Score=413.23 Aligned_cols=334 Identities=21% Similarity=0.254 Sum_probs=263.6
Q ss_pred CCcCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 23 GGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 23 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
.+|++++ |++.+.+.+++.||..|+|+|.++++.++++++++++||||||||++|.+|+++.+.. +.+++|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~ 75 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVV 75 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEe
Confidence 3689999 9999999999999999999999999999999999999999999999999999988763 46799999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|+++|+.|+++.++.+.. .+++++.++|+...... ...+++|+|+||+++..++.+ ....++++++||+||+|++
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeec
Confidence 999999999998866543 47899999987654332 124789999999999998876 3344889999999999999
Q ss_pred ccCChHHHHHHHHHhc---CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEE------Eechh--
Q 009477 181 FGMGFAEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF------TLRQE-- 249 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~---~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~------~~~~~-- 249 (534)
.+.++...+..++..+ .+..|++++|||+++ ...++.. +..+ .+..+.. .. .+...+. .....
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~-~~~~~~r--~~-~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDAD-YYVSDWR--PV-PLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCE-EEECCCC--SS-CEEEEEECSSEEEEEETTEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCC-cccCCCC--Cc-cceEEEeeCCeeeccCcchh
Confidence 9888777777766555 578999999999985 3455543 3322 2221111 11 1111110 11111
Q ss_pred -----hHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc------------------------------CCCce
Q 009477 250 -----EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------------------GLEPS 294 (534)
Q Consensus 250 -----~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~------------------------------~~~~~ 294 (534)
.....+... +.+++++||||+++++++.++..|... +..+.
T Consensus 225 ~~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 225 TSRRVKFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEECCHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 133333333 346799999999999999999888753 23578
Q ss_pred eecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----cC---CCCChhhhHHhhccCCCCC--Ccce
Q 009477 295 VCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FPPKPKIFVHRVGRAARAG--RTGT 365 (534)
Q Consensus 295 ~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~~---~p~s~~~~~qr~GR~gR~g--~~G~ 365 (534)
.+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 8999999999999999999999999999999999999999999998 66 7899999999999999998 4799
Q ss_pred EEEEeccccHH
Q 009477 366 AFSFVTSEDMA 376 (534)
Q Consensus 366 ~i~~~~~~e~~ 376 (534)
|+.+++..+..
T Consensus 381 ~~~l~~~~~~~ 391 (702)
T 2p6r_A 381 AIIIVGKRDRE 391 (702)
T ss_dssp EEEECCGGGHH
T ss_pred EEEEecCccHH
Confidence 99999988744
No 30
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.8e-44 Score=391.24 Aligned_cols=324 Identities=20% Similarity=0.265 Sum_probs=262.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..|+ .|+|+|..++|.++.|+ |+.++||+|||++|.+|++.... .|.+++||+||++||.|.++++..+.++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-----~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-----AGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-----TTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-----hCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3698 79999999999999998 99999999999999999975443 2567999999999999999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-c----------
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G---------- 182 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-~---------- 182 (534)
.++++++++||.+.... ....+++|+||||++| ++++... ..+.+..+.++|+||||+|+ +
T Consensus 179 lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg 256 (922)
T 1nkt_A 179 LGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISG 256 (922)
T ss_dssp TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecC
Confidence 99999999999875443 3344799999999999 8888752 23667899999999999998 3
Q ss_pred -----CChHHHHHHHHHhcC---------CCCcEE-----------------EEEeeCCHH---HHHHHHh--cCC-C--
Q 009477 183 -----MGFAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSA---LAEFAKA--GLR-D-- 223 (534)
Q Consensus 183 -----~~~~~~~~~i~~~~~---------~~~q~l-----------------l~SAT~~~~---~~~~~~~--~l~-~-- 223 (534)
++|...+..++..++ ..+|++ +||||++.. +....++ .+. +
T Consensus 257 ~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d 336 (922)
T 1nkt_A 257 PADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD 336 (922)
T ss_dssp ECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT
T ss_pred CCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc
Confidence 358899999999998 678888 999998753 2222211 221 1
Q ss_pred -----CeEEEeccc-----------------------------ccc----------------------------------
Q 009477 224 -----PHLVRLDVD-----------------------------TKI---------------------------------- 235 (534)
Q Consensus 224 -----~~~i~~~~~-----------------------------~~~---------------------------------- 235 (534)
+..+.++.- ...
T Consensus 337 YiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY 416 (922)
T 1nkt_A 337 YIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY 416 (922)
T ss_dssp EEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh
Confidence 111111100 000
Q ss_pred ----------CCCce---EEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCH
Q 009477 236 ----------SPDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (534)
Q Consensus 236 ----------~~~~~---~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~ 302 (534)
.+... ..++.+...+|..++...+.+....+.++||||+|+..++.++..|...|+++.++||+..+
T Consensus 417 ~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~ 496 (922)
T 1nkt_A 417 KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHE 496 (922)
T ss_dssp CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHH
T ss_pred CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 00000 01344566778999999887765667899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCcccccCCCCCC-----------------------------------------------
Q 009477 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----------------------------------------------- 335 (534)
Q Consensus 303 ~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v----------------------------------------------- 335 (534)
.++..+.+.|+.| .|+|||++|+||+||+..
T Consensus 497 rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 574 (922)
T 1nkt_A 497 QEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEV 574 (922)
T ss_dssp HHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 8888888888887 599999999999999975
Q ss_pred -----CEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccH
Q 009477 336 -----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (534)
Q Consensus 336 -----~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~ 375 (534)
.+||+++.|.|...|.||+||+||+|.+|.+++|++.+|.
T Consensus 575 ~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 575 IEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998764
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.5e-46 Score=427.82 Aligned_cols=336 Identities=18% Similarity=0.229 Sum_probs=267.5
Q ss_pred CcCCCCCCHHHH-----HHHH-HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEE
Q 009477 24 GFESLNLSPNVF-----RAIK-RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (534)
Q Consensus 24 ~f~~l~l~~~l~-----~~l~-~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~L 97 (534)
.+...++++.+. +.+. ..||. | |+|.+++|.++.|+|+++.|+||||||+ |.+|++..+.. .+.++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~l 103 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCY 103 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEE
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEE
Confidence 455666655443 3343 47999 9 9999999999999999999999999998 89999888765 367899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCC----eEEEEEcCCCHHHH---HHHHhCCCCEEEECchHHHHHHHhcCCCCCCCee
Q 009477 98 ILSPTRDLALQTLKFTKELGRYTDL----RISLLVGGDSMESQ---FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (534)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l----~~~~~~gg~~~~~~---~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~ 170 (534)
||+||++|+.|+.+.++.++...++ ++..++||.+...+ ...+.. ++|+|+||++|.+++.+ +++++
T Consensus 104 il~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~ 177 (1054)
T 1gku_B 104 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFD 177 (1054)
T ss_dssp EEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCS
T ss_pred EEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCC
Confidence 9999999999999999999988888 89999999887764 344445 99999999999987653 66999
Q ss_pred EEEEcCCCccccCChHHHHHHHHHhc-----------CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCc
Q 009477 171 YVVFDEADCLFGMGFAEQLHKILGQL-----------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (534)
Q Consensus 171 ~iViDEah~l~~~~~~~~~~~i~~~~-----------~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 239 (534)
+||+||||++++ +...+..++..+ +..+|++++|||+++. ..+...++.++..+.+.........+
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i 254 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNV 254 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCE
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCc
Confidence 999999999998 456677777665 4578999999999876 43333333333333333333334455
Q ss_pred eEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEE
Q 009477 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (534)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~i 319 (534)
.+.+. ...+...|..++... ++++||||+|+..++.+++.|... +.+..+||++ ..+++.|++|+.+|
T Consensus 255 ~~~~~---~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~V 322 (1054)
T 1gku_B 255 EDVAV---NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDH 322 (1054)
T ss_dssp EEEEE---SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSE
T ss_pred eEEEe---chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcE
Confidence 55554 345666666776543 578999999999999999999988 9999999998 36789999999999
Q ss_pred EEE----eCcccccCCCCCC-CEEEEcCCC--------------------------------------------------
Q 009477 320 LIV----TDVAARGIDIPLL-DNVINWDFP-------------------------------------------------- 344 (534)
Q Consensus 320 LI~----Tdv~a~GlDip~v-~~VI~~~~p-------------------------------------------------- 344 (534)
||| |+++++|+|+|+| ++||++|+|
T Consensus 323 LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1054)
T 1gku_B 323 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK 402 (1054)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHH
T ss_pred EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999995 999999999
Q ss_pred ---------------------CChhhhHHhhccCCCCCCcc--eEEEEeccccHHHHHHHHHHhCC
Q 009477 345 ---------------------PKPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLSK 387 (534)
Q Consensus 345 ---------------------~s~~~~~qr~GR~gR~g~~G--~~i~~~~~~e~~~~~~l~~~~~~ 387 (534)
.+..+|+||+||+||.|..| .+++++..+|...+..++..++.
T Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 403 VMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48889988888888888877764
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-43 Score=376.22 Aligned_cols=324 Identities=21% Similarity=0.280 Sum_probs=255.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeE
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (534)
+|+|+|.++++.++.+ ++++.++||+|||++++.++.+.+.. .+.++||++|+++|+.|+.+.++++....+.++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 5999999999999999 99999999999999999999987762 356799999999999999999999875555689
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
..++|+......... ..+++|+|+||++|...+.. ..+.+.++++||+||||++.+......+...+.......++++
T Consensus 84 ~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 84 VALTGEKSPEERSKA-WARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred EEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 999998877654433 34689999999999998875 4577899999999999999877666666666666677899999
Q ss_pred EEeeCCHH---HHHHHHhcCCCCeEEEecccccc---CCCceEEEEEe--------------------------------
Q 009477 205 FSATLPSA---LAEFAKAGLRDPHLVRLDVDTKI---SPDLKLAFFTL-------------------------------- 246 (534)
Q Consensus 205 ~SAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~---~~~~~~~~~~~-------------------------------- 246 (534)
+|||++.. +..+................... .......+...
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999743 33333332211111110000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009477 247 -------------------------------------------------------------------------------- 246 (534)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (534)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------chhhHHHHHHHHHHHhc--CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecC--------
Q 009477 247 ------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG-------- 298 (534)
Q Consensus 247 ------------------~~~~k~~~L~~~l~~~~--~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g-------- 298 (534)
....|...|..++.+.. ..+.++||||+++..++.+++.|...|+.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 12235566667776654 56899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHH
Q 009477 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (534)
Q Consensus 299 ~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~ 376 (534)
++++.+|..+++.|++|+.+|||+|+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.++++++..
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999988654
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-44 Score=407.79 Aligned_cols=334 Identities=19% Similarity=0.239 Sum_probs=215.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
-.|+..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++.++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999998877654333678999999999999999999999888
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCChHHHH-HHHHHh--
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQL-HKILGQ-- 195 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~~~~~~-~~i~~~-- 195 (534)
.++++..++|+.....+...+..+++|+|+||++|.+++.. ..+ .+.++++||+||||++.+.+....+ ..++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~-~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS-SSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc-CccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 89999999999877766666667799999999999999886 344 6889999999999999977543332 233332
Q ss_pred --cCCCCcEEEEEeeCCH-----------HHHHHHH------------------hcCCCCeEEEeccccccCCC------
Q 009477 196 --LSENRQTLLFSATLPS-----------ALAEFAK------------------AGLRDPHLVRLDVDTKISPD------ 238 (534)
Q Consensus 196 --~~~~~q~ll~SAT~~~-----------~~~~~~~------------------~~l~~~~~i~~~~~~~~~~~------ 238 (534)
..+..+++++|||++. .+..+.. .+...|..............
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 1456899999999852 1111111 11222222211111000000
Q ss_pred ---------------------ceEEEEEe---------------------------------------------------
Q 009477 239 ---------------------LKLAFFTL--------------------------------------------------- 246 (534)
Q Consensus 239 ---------------------~~~~~~~~--------------------------------------------------- 246 (534)
+....+..
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00000000
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHHhc--CCCCeEEEEEcCh
Q 009477 247 ------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (534)
Q Consensus 247 ------------------------------------------------~~~~k~~~L~~~l~~~~--~~~~~~IVF~~t~ 276 (534)
....|...|..++.+.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 01224445556666543 4578999999999
Q ss_pred hhHHHHHHHHHHc------------CCCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEeCcccccCCCCCCCEEEEcCC
Q 009477 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (534)
Q Consensus 277 ~~~e~l~~~L~~~------------~~~~~~l~g~~~~~~r~~~~~~F~~-g~~~iLI~Tdv~a~GlDip~v~~VI~~~~ 343 (534)
..++.+++.|... |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999986 5555666888999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhHHhhccCCCCCCcceEEEEeccccHH
Q 009477 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (534)
Q Consensus 344 p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~ 376 (534)
|+|+..|+||+|| ||. +.|.++.+++..+..
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999 998 789999999887654
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-43 Score=396.91 Aligned_cols=322 Identities=18% Similarity=0.238 Sum_probs=255.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 38 l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
....+|. |+|+|.++++.+.+|+++++.||||||||++|.+|++..+. .|.++||++||++|+.|+++.++.+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----NKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----cCCeEEEECChHHHHHHHHHHHHHHh
Confidence 3445786 99999999999999999999999999999999999998774 36789999999999999999988866
Q ss_pred ccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcC
Q 009477 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (534)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~ 197 (534)
. .++.++|+.... .+++|+|+||++|.+++.+ ....+.++++|||||||++.++++...+..++..++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 3 677888876542 3689999999999988876 456789999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCHHHH--HHHHhcCCCCeEEEeccccccCCCceEEEEE---------ech------------------
Q 009477 198 ENRQTLLFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLAFFT---------LRQ------------------ 248 (534)
Q Consensus 198 ~~~q~ll~SAT~~~~~~--~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~---------~~~------------------ 248 (534)
...|++++|||+|+... .+.......+..+...... . ..+.+.++. +..
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r-p-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-P-TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC-S-SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-c-ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 99999999999987532 4443333444443332211 1 122222221 100
Q ss_pred ----------------------------hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCC--------
Q 009477 249 ----------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-------- 292 (534)
Q Consensus 249 ----------------------------~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~-------- 292 (534)
......++..+... ...++||||+|+..++.++..|...++.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11122233333322 3458999999999999999988765442
Q ss_pred -------------------------------ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE-
Q 009477 293 -------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN- 340 (534)
Q Consensus 293 -------------------------------~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~- 340 (534)
+..+||+|++..|+.+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred ---cCC----CCChhhhHHhhccCCCCCC--cceEEEEeccc-cHHHHHHH
Q 009477 341 ---WDF----PPKPKIFVHRVGRAARAGR--TGTAFSFVTSE-DMAYLLDL 381 (534)
Q Consensus 341 ---~~~----p~s~~~~~qr~GR~gR~g~--~G~~i~~~~~~-e~~~~~~l 381 (534)
||. |.++..|+||+||+||.|. .|.|+.++++. +...+..+
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 8999999999999999997 49999999876 54444443
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-43 Score=392.53 Aligned_cols=328 Identities=19% Similarity=0.213 Sum_probs=252.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 32 ~~l~~~l~~~g~~~~~~~Q~~ai~~il~~------~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
+.+.+-+...|| .||++|+++++.++.+ .+++++|+||||||++|++|+++.+.. |.+++|++||++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 445555678899 7999999999998875 589999999999999999999988753 5789999999999
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH---HHHhC-CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 106 a~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
+.|+++.++++....++++..++|+.+..+.. ..+.. .++|+|+||+.+.+ .+.+.++++||+||+|++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhh
Confidence 99999999999888899999999998876543 33333 59999999997753 4678999999999999953
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHH
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 261 (534)
. .. ...+......+++++||||+++....... ..+.....++........+... +....+...+...+.+
T Consensus 504 ~---~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~---~~~~~~~~~l~~~i~~ 573 (780)
T 1gm5_A 504 V---KQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTM---LVPMDRVNEVYEFVRQ 573 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEEC---CCCSSTHHHHHHHHHH
T ss_pred H---HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEE---EeccchHHHHHHHHHH
Confidence 2 11 22233344578999999998765443333 3332222222111111222221 2233445667777877
Q ss_pred hcCCCCeEEEEEcCh--------hhHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 262 HISSDQQTLIFVSTK--------HHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 262 ~~~~~~~~IVF~~t~--------~~~e~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
.+..+++++|||++. ..++.+++.|.. .++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 778899999999965 447788888877 478899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-ChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHH
Q 009477 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (534)
Q Consensus 331 Dip~v~~VI~~~~p~-s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l 381 (534)
|+|++++||+++.|. +...|.||+||+||.|++|.|+.++.+.+......+
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 999999999999985 688899999999999999999999885444333333
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.7e-41 Score=389.24 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=262.5
Q ss_pred CCCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhc----CC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 27 SLNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILS----GA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 27 ~l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~il~----~~--d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
.+++++...+.+. ..||. |||+|.++++.++. ++ |++++|+||||||++++.+++..+. .|++++|+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----~g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----NHKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----TTCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----hCCeEEEE
Confidence 4567888888775 46887 79999999999886 65 8999999999999999999887654 36799999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH---HHHhC-CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
+||++|+.|+++.++++....++++..++|..+..++. ..+.. .++|+|+||+.+. ..+.++++++||+|
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEe
Confidence 99999999999999887777788999998877655443 33333 6999999998664 45778999999999
Q ss_pred CCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHH
Q 009477 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (534)
Q Consensus 176 Eah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (534)
|||++ ......++..++.+.+++++|||+++........++.++..+..... ....+...+..... ..+
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~~----~~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYDS----MVV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECCH----HHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCCH----HHH
Confidence 99993 34456667777788999999999987777777777665544332211 11223333333222 223
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip 333 (534)
...+...+..+++++|||+++.+++.+++.|... +..+..+||+|++.+|+.++++|++|+.+|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3333334457899999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-CCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 334 LLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 334 ~v~~VI~~~~-p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
++++||+++. +++...|.||+||+||.|+.|.|+.++.+++
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999988 5788999999999999999999999987653
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.6e-43 Score=394.18 Aligned_cols=324 Identities=21% Similarity=0.238 Sum_probs=227.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC-CCCeEEEEEcCcHHHHHHH-HHHHHHhhccCCC
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSPTRDLALQT-LKFTKELGRYTDL 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~-~~g~~~Lil~PtreLa~Q~-~~~~~~~~~~~~l 122 (534)
.|+|+|.++++.++.|+++++.++||+|||++|++|+++.+..... ..+.++|||+|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 5999999999999999999999999999999999999988765421 2236799999999999999 9999998755 58
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHh-----cCCCCCCCeeEEEEcCCCccccCChH-HHHHHHHHh-
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLFGMGFA-EQLHKILGQ- 195 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-----~~~~~l~~~~~iViDEah~l~~~~~~-~~~~~i~~~- 195 (534)
++..++|+.....++..+..+++|+|+||++|.+.+.. ...+.+.++++|||||||++...++. ..+...+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 99999998877666666668899999999999988732 23467889999999999998654322 222222221
Q ss_pred ---c---------CCCCcEEEEEeeCCHH-----------HHHHHHhcCCCCeEEEeccc-c---ccCCCceEEEEEec-
Q 009477 196 ---L---------SENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD-T---KISPDLKLAFFTLR- 247 (534)
Q Consensus 196 ---~---------~~~~q~ll~SAT~~~~-----------~~~~~~~~l~~~~~i~~~~~-~---~~~~~~~~~~~~~~- 247 (534)
. .+..+++++|||++.. +..+.... ........... . .........+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANL-DAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHH-TCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhc-CCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 1567999999999862 22221111 11000000000 0 00000001111100
Q ss_pred --------------------------------------------------------------------------------
Q 009477 248 -------------------------------------------------------------------------------- 247 (534)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (534)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------hhhHHHHHHHHHHHhcC--C-CCeEE
Q 009477 248 ------------------------------------------------------QEEKHAALLYMIREHIS--S-DQQTL 270 (534)
Q Consensus 248 ------------------------------------------------------~~~k~~~L~~~l~~~~~--~-~~~~I 270 (534)
...|...|..++.+... + ++++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00112223333433221 2 78999
Q ss_pred EEEcChhhHHHHHHHHHHc------CCCceeecCC--------CCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCC
Q 009477 271 IFVSTKHHVEFLNVLFREE------GLEPSVCYGD--------MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (534)
Q Consensus 271 VF~~t~~~~e~l~~~L~~~------~~~~~~l~g~--------~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~ 336 (534)
|||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc
Q 009477 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 337 ~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
+||+||+|+|+..|+||+||+||. |.+++++.+.
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 999999999999999999997654 3555555543
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.4e-41 Score=385.36 Aligned_cols=311 Identities=20% Similarity=0.260 Sum_probs=242.8
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (534)
..+|. |+|+|.++++.+++|+++++.|+||||||++|++|+...+. .+.+++|++|+++|+.|+++.++.+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----~g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----NMTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----TTCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 34676 89999999999999999999999999999999999887654 36789999999999999999888754
Q ss_pred CCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCC
Q 009477 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (534)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~ 199 (534)
.++.++.++|+... ...++|+|+||++|.+.+.. ....+.++++|||||||++.++++...+.+++..++..
T Consensus 107 ~~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 107 DDVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp --CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 26889999997753 24589999999999998876 44568899999999999999999999999999999999
Q ss_pred CcEEEEEeeCCHHH--HHHHHhcCCCCeEEEeccccccCCCceEEEE---------------------------------
Q 009477 200 RQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFF--------------------------------- 244 (534)
Q Consensus 200 ~q~ll~SAT~~~~~--~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~--------------------------------- 244 (534)
.|++++|||+|+.. ..+.......+..+.. .... ...+.+.+.
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~-~~~r-~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIS-TPKR-PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE-CSSC-SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEe-cCCC-CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 99999999998653 2222211111111111 1110 011111110
Q ss_pred ------------------------------------------------------------EechhhHHHHHHHHHHHhcC
Q 009477 245 ------------------------------------------------------------TLRQEEKHAALLYMIREHIS 264 (534)
Q Consensus 245 ------------------------------------------------------------~~~~~~k~~~L~~~l~~~~~ 264 (534)
......+...++..+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-- 334 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-- 334 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHT--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--
Confidence 011223355666666654
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHcCC---------------------------------------CceeecCCCCHHHH
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREEGL---------------------------------------EPSVCYGDMDQDAR 305 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~~~---------------------------------------~~~~l~g~~~~~~r 305 (534)
...++||||+|+..++.++..|...++ .+..+||+|++..|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 467999999999999999999876555 46899999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCC---------ChhhhHHhhccCCCCC--CcceEEEEec
Q 009477 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP---------KPKIFVHRVGRAARAG--RTGTAFSFVT 371 (534)
Q Consensus 306 ~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~---------s~~~~~qr~GR~gR~g--~~G~~i~~~~ 371 (534)
..+++.|++|+++|||||+++++|+|+|+ ..||.++.|. ++..|+||+|||||.| ..|.|+.++.
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999999 5555555554 9999999999999998 4577887774
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.1e-44 Score=388.72 Aligned_cols=318 Identities=15% Similarity=0.173 Sum_probs=241.5
Q ss_pred CcCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 24 GFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 24 ~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.|.. +++++.++++|... ...++|+|+.++|.+++|+|+++.|+||||||++|++|+++.+.. .+.++|||+||
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Pt 224 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPT 224 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESS
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcCh
Confidence 3455 77888887777654 588999999899999999999999999999999999999998875 36789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
|+|+.|+.+.++. ..+. +.++. .. .....+..+.++|.+.+.+.+.. ...++++++||+||||++ +
T Consensus 225 reLa~Qi~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 225 RVVAAEMEEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-C
Confidence 9999999877652 3333 22211 00 00112456778888888877664 356899999999999998 6
Q ss_pred CChHHHHHHHHHhcC-CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHH
Q 009477 183 MGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (534)
Q Consensus 183 ~~~~~~~~~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 261 (534)
++|...+..++..++ .++|+++||||++..+..++. .++..+.+..... ..+...++..+.+
T Consensus 291 ~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~--------------~~~~~~ll~~l~~ 353 (618)
T 2whx_A 291 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP--------------ERSWNTGFDWITD 353 (618)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC--------------SSCCSSSCHHHHH
T ss_pred ccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC--------------HHHHHHHHHHHHh
Confidence 677778888877775 689999999999877543322 2444444332210 0111123333333
Q ss_pred hcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEE---
Q 009477 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV--- 338 (534)
Q Consensus 262 ~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~V--- 338 (534)
.++++||||+|+++++.+++.|...++.+..+||+ +|..+++.|++|+.+||||||++++|+|+| +++|
T Consensus 354 ---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 ---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp ---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred ---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEEC
Confidence 36799999999999999999999999999999984 678899999999999999999999999998 8988
Q ss_pred -----------------EEcCCCCChhhhHHhhccCCCCCC-cceEEEEec---cccHHHHHHHHHHh
Q 009477 339 -----------------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVT---SEDMAYLLDLHLFL 385 (534)
Q Consensus 339 -----------------I~~~~p~s~~~~~qr~GR~gR~g~-~G~~i~~~~---~~e~~~~~~l~~~~ 385 (534)
|+|+.|.+..+|+||+||+||+|. +|.+++|++ ++|...+..++..+
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 777889999999999999999965 899999998 77777777766654
No 40
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.8e-41 Score=374.10 Aligned_cols=337 Identities=18% Similarity=0.246 Sum_probs=252.8
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li 98 (534)
....+|+++++++.+.+.+..+| ..|+++|+++|+.++. ++++++.|+||||||+ ++|++-.........|.+++|
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 45678999999999999999988 7799999999987775 5679999999999999 566552221111112678999
Q ss_pred EcCcHHHHHHHHHHHHH-hhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 99 LSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~-~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
++|+|+|+.|+++.+.. ++...+..++.-...... ...+++|+++|||++.+.+.. ...+.++++||+||+
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEa 217 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEA 217 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSG
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCc
Confidence 99999999999876544 332333333322221111 124689999999999988875 356899999999999
Q ss_pred Cc-cccCChH-HHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHH
Q 009477 178 DC-LFGMGFA-EQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (534)
Q Consensus 178 h~-l~~~~~~-~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (534)
|. .++..+. ..+..+... .+..|++++|||++.. .+.. ++.++..+.+.... ..+.+.|......+.....
T Consensus 218 h~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l~~-~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~ 290 (773)
T 2xau_A 218 HERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KFQR-YFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSA 290 (773)
T ss_dssp GGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HHHH-HTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHH
T ss_pred cccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HHHH-HhcCCCcccccCcc---cceEEEEecCCchhHHHHH
Confidence 95 5553332 333444433 3578999999999643 3443 45555555544332 2345555444444444444
Q ss_pred HHHHHHhc--CCCCeEEEEEcChhhHHHHHHHHHH-----------cCCCceeecCCCCHHHHHHHHHHHh-----cCCc
Q 009477 256 LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE-----------EGLEPSVCYGDMDQDARKIHVSRFR-----ARKT 317 (534)
Q Consensus 256 ~~~l~~~~--~~~~~~IVF~~t~~~~e~l~~~L~~-----------~~~~~~~l~g~~~~~~r~~~~~~F~-----~g~~ 317 (534)
+..+.... ..++++||||+++.+++.+++.|.. .++.+..+||++++.+|..+++.|+ +|+.
T Consensus 291 l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 291 IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce
Confidence 33333221 2578999999999999999999975 5778999999999999999999999 9999
Q ss_pred EEEEEeCcccccCCCCCCCEEEEcCC------------------CCChhhhHHhhccCCCCCCcceEEEEeccccH
Q 009477 318 MFLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (534)
Q Consensus 318 ~iLI~Tdv~a~GlDip~v~~VI~~~~------------------p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~ 375 (534)
+|||||+++++|+|+|++++||++++ |.+...|+||+||+||. ++|.|+.++++.+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999888 89999999999999999 78999999987654
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.3e-42 Score=369.74 Aligned_cols=313 Identities=15% Similarity=0.175 Sum_probs=241.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCe
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~ 123 (534)
.+|+|+|.++++.++.+++++++++||||||++++.|+...+... +.++|||+||++|+.|+.+.+++++...++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 379999999999999999999999999999999999988877542 3489999999999999999999998777788
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEE
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~l 203 (534)
+..++|+.+...+ ....++|+|+||+++... ....+.++++||+||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 9999998776544 456799999999987643 224577899999999999875 45677788888889999
Q ss_pred EEEeeCCHHHHHHH-HhcCCCCeEEEeccccc----cCCCce--EEEEEech---------------------hhHHHHH
Q 009477 204 LFSATLPSALAEFA-KAGLRDPHLVRLDVDTK----ISPDLK--LAFFTLRQ---------------------EEKHAAL 255 (534)
Q Consensus 204 l~SAT~~~~~~~~~-~~~l~~~~~i~~~~~~~----~~~~~~--~~~~~~~~---------------------~~k~~~L 255 (534)
++||||++...... ...+.++..+.+..... ...... ......+. ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 99999976532211 11122233332222111 011111 11111111 1233445
Q ss_pred HHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-CcccccCCCCC
Q 009477 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIPL 334 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-dv~a~GlDip~ 334 (534)
..++......+++.+|++.+..+++.+++.|...+..+..+||++++.+|+.+++.|++|+.+||||| +++++|+|+|+
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~ 416 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN 416 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccccc
Confidence 56666555555555555555889999999999998899999999999999999999999999999999 99999999999
Q ss_pred CCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEec
Q 009477 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 335 v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
+++||+++.|.++..|.||+||+||.|+.|.++.+++
T Consensus 417 v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 417 LHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999998775554544
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5e-42 Score=361.92 Aligned_cols=287 Identities=17% Similarity=0.199 Sum_probs=218.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 42 GYKVPTPIQRKTMPLILSGADV-VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~-i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
|+.+|+|+|+ ++|.+++++++ ++.|+||||||++|++|+++.+.. .+.++||++|||+|+.|+.+.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7899999986 89999999887 999999999999999999987765 36789999999999999988764
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHH-HhcCCC
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL-GQLSEN 199 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~-~~~~~~ 199 (534)
++.+....+.... ....+..|.++|++.+.+.+.. ...+.++++||+||||++ +..+...+..+. ...+.+
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCC
Confidence 2333322222111 1124567999999999988875 366889999999999987 333333222222 223567
Q ss_pred CcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhH
Q 009477 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV 279 (534)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~ 279 (534)
+|+++||||+|.....+ ...++..+...... +.. .+ ..+...+.+ .++++||||+|++++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~~--~~---------~~~~~~l~~---~~~~~lVF~~s~~~a 201 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PER--SW---------NTGFDWITD---YQGKTVWFVPSIKAG 201 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CSS--CC---------SSSCHHHHH---CCSCEEEECSSHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccC---Cch--hh---------HHHHHHHHh---CCCCEEEEcCCHHHH
Confidence 99999999998754322 23344444332111 100 00 112233333 367999999999999
Q ss_pred HHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcC-----------------
Q 009477 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----------------- 342 (534)
Q Consensus 280 e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~----------------- 342 (534)
+.+++.|...|+.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~ 276 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVIL 276 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeee
Confidence 9999999999999999999754 56899999999999999999999999999 9999999
Q ss_pred ---CCCChhhhHHhhccCCCCCC-cceEEEEecc
Q 009477 343 ---FPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (534)
Q Consensus 343 ---~p~s~~~~~qr~GR~gR~g~-~G~~i~~~~~ 372 (534)
.|.+...|+||+||+||.|+ +|.++.|...
T Consensus 277 ~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 277 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.7e-40 Score=387.56 Aligned_cols=347 Identities=17% Similarity=0.222 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (534)
|....++++...+|..++|+|.++++.++. +++++++||||||||++|.+|+++.+.+. .+.+++|++|+++|+.|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 456788888889999999999999999976 56799999999999999999999998765 45679999999999999
Q ss_pred HHHHHH-HhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC-CCCCCeeEEEEcCCCccccCChH
Q 009477 109 TLKFTK-ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFA 186 (534)
Q Consensus 109 ~~~~~~-~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-~~l~~~~~iViDEah~l~~~~~~ 186 (534)
.++.++ .|+...+++++.++|+...+.. ...+++|+|+||+++..++.+... ..++++++||+||+|.+.+. ..
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg 1063 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NG 1063 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-TH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CC
Confidence 998775 5777789999999987654332 224589999999998776654222 23678999999999998875 34
Q ss_pred HHHHHH-------HHhcCCCCcEEEEEeeCCHHHHHHHHhc-CCCCeEEEeccccccCCCceEEEEEechhhHH------
Q 009477 187 EQLHKI-------LGQLSENRQTLLFSATLPSALAEFAKAG-LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH------ 252 (534)
Q Consensus 187 ~~~~~i-------~~~~~~~~q~ll~SAT~~~~~~~~~~~~-l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~------ 252 (534)
..+..+ ....+.+.|++++|||+++. .+++... ......+.+.....+. .+...+.........
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPv-pL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPV-PLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSS-CEEEEEEEECCCSHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCC-CeEEEEEeccCCCchhhhhhh
Confidence 444333 34457789999999999864 4444433 2333334443333222 233333333322211
Q ss_pred -HHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc----------------------------------CCCceeec
Q 009477 253 -AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----------------------------------GLEPSVCY 297 (534)
Q Consensus 253 -~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~----------------------------------~~~~~~l~ 297 (534)
..+...+.. ...++++||||+|+..++.++..|... ...++.+|
T Consensus 1142 ~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1142 AKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp HHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred cchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 222333333 346789999999999999887665321 13477899
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----c------CCCCChhhhHHhhccCCCCCC--cce
Q 009477 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----W------DFPPKPKIFVHRVGRAARAGR--TGT 365 (534)
Q Consensus 298 g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~------~~p~s~~~~~qr~GR~gR~g~--~G~ 365 (534)
++|++.+|..+.+.|++|.++|||||+++++|+|+|..++||. | ..|.++.+|.|++|||||+|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999999883 2 236789999999999999997 699
Q ss_pred EEEEeccccHHHHHHHHHHhCCCc
Q 009477 366 AFSFVTSEDMAYLLDLHLFLSKPI 389 (534)
Q Consensus 366 ~i~~~~~~e~~~~~~l~~~~~~~~ 389 (534)
|+.++.+.+..++.. ++..+.
T Consensus 1301 avll~~~~~~~~~~~---ll~~~~ 1321 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK---FLYEPL 1321 (1724)
T ss_dssp EEEEEEGGGHHHHHH---HTTSCB
T ss_pred EEEEecchHHHHHHH---HhCCCC
Confidence 999998887766543 455443
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-40 Score=353.49 Aligned_cols=293 Identities=17% Similarity=0.187 Sum_probs=226.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCe-
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~- 123 (534)
.|+|+|.++++.++.++++++.++||+|||++|+.++... +.++|||+|+++|+.||.+.+++| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5999999999999999999999999999999999988764 457999999999999999888775 577
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEE
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~l 203 (534)
+..++|+.. ...+|+|+||+++...+... ..++++||+||||++.+.+|.. ++..+ ...+++
T Consensus 161 v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEE
T ss_pred eEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEE
Confidence 888887664 35799999999998776532 2468999999999999887754 44444 467899
Q ss_pred EEEeeCCH-------------------HHHHHHHhcCCCCeEEEecccccc--------------------------CCC
Q 009477 204 LFSATLPS-------------------ALAEFAKAGLRDPHLVRLDVDTKI--------------------------SPD 238 (534)
Q Consensus 204 l~SAT~~~-------------------~~~~~~~~~l~~~~~i~~~~~~~~--------------------------~~~ 238 (534)
++||||+. ....+...++.++....+..+... ...
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 99999972 233332233333322211110000 000
Q ss_pred ceEE---------------------EEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeec
Q 009477 239 LKLA---------------------FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (534)
Q Consensus 239 ~~~~---------------------~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~ 297 (534)
.... .+.+....|...|..++.. ..++++||||+++..++.+++.|. +..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 0000 0001233466777777876 367899999999999999999873 66899
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCc---ceEEEEecccc
Q 009477 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT---GTAFSFVTSED 374 (534)
Q Consensus 298 g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~---G~~i~~~~~~e 374 (534)
|++++.+|+.+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..|.||+||+||.|+. ..+|.+++.+.
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853 34566776553
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-39 Score=382.68 Aligned_cols=334 Identities=19% Similarity=0.290 Sum_probs=249.7
Q ss_pred CCCCCcHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCC------CCCeEEEEEcCcHHHHHHHHHHHH
Q 009477 42 GYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPTRDLALQTLKFTK 114 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~-~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~------~~g~~~Lil~PtreLa~Q~~~~~~ 114 (534)
||+.++++|.+++|.++. ++|++++||||||||++|.+|+++.+.++.. ..+.++||++|+++|+.|+.+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999998875 7899999999999999999999999876432 346789999999999999999998
Q ss_pred HhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC-CCCCCeeEEEEcCCCccccCChHHHHHHHH
Q 009477 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (534)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-~~l~~~~~iViDEah~l~~~~~~~~~~~i~ 193 (534)
+.....|+++..++|+....... ..+++|+|+||+++..++.+... ..++++++||+||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 87777899999999987654321 24689999999998554433111 1268899999999997765 4454444443
Q ss_pred -------HhcCCCCcEEEEEeeCCHHHHHHHHhcCCCC--eEEEeccccccCCCceEEEEEechhh---HHHHHHHHHHH
Q 009477 194 -------GQLSENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQEE---KHAALLYMIRE 261 (534)
Q Consensus 194 -------~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~---k~~~L~~~l~~ 261 (534)
...+...|++++|||+|+ ..++++..-.++ ....++.... +..+...++.+.... +...+...+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGC-SSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCc-cCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 345778999999999986 355555432222 1222222222 223444444443322 12222222221
Q ss_pred ---hcCCCCeEEEEEcChhhHHHHHHHHHHc-------------------------------------CCCceeecCCCC
Q 009477 262 ---HISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGDMD 301 (534)
Q Consensus 262 ---~~~~~~~~IVF~~t~~~~e~l~~~L~~~-------------------------------------~~~~~~l~g~~~ 301 (534)
....++++||||+|++.++.++..|.+. ...++++||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 1234679999999999998888777531 123678999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE----cC------CCCChhhhHHhhccCCCCCC--cceEEEE
Q 009477 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD------FPPKPKIFVHRVGRAARAGR--TGTAFSF 369 (534)
Q Consensus 302 ~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~----~~------~p~s~~~~~qr~GR~gR~g~--~G~~i~~ 369 (534)
+.+|..+.+.|++|.++|||||+++++|+|+|..++||. |+ .|.++.+|.||+|||||.|. .|.++.+
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999984 43 35689999999999999875 5999999
Q ss_pred eccccHHHHHHH
Q 009477 370 VTSEDMAYLLDL 381 (534)
Q Consensus 370 ~~~~e~~~~~~l 381 (534)
..+++..+...+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 998887665543
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.1e-40 Score=359.84 Aligned_cols=279 Identities=19% Similarity=0.282 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeE
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (534)
.++++|..+++.+..++++++.|+||||||++|.+|+++ .+.++||++|||+||.|+++.+.+.. +..+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~v 285 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDP 285 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCe
Confidence 355666666666667889999999999999999999886 25689999999999999988665533 4556
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCc--E
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ--T 202 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q--~ 202 (534)
...+|+.. ...+++|+|+||++|+ . ...+.++++++|||||||. ++++|...+..+++.++..++ +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceE
Confidence 67777654 3567999999999984 2 2567788999999999964 667788889999999988777 6
Q ss_pred EEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHH
Q 009477 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282 (534)
Q Consensus 203 ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l 282 (534)
+++|||++..+. ...+....+.... ...+. +. ..... +. ...++++||||+|++.++.+
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~--~~~i~--~~--~~~~~-------l~--~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSN--TGEIP--FY--GKAIP-------IE--AIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBS--CSSEE--ET--TEEEC-------GG--GSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecc--cchhH--HH--Hhhhh-------hh--hccCCcEEEEeCCHHHHHHH
Confidence 778999987421 2223222221111 11111 10 00000 11 12578999999999999999
Q ss_pred HHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE----------EcC----------
Q 009477 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----------NWD---------- 342 (534)
Q Consensus 283 ~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI----------~~~---------- 342 (534)
++.|...++.+..+||++++.+ |.++..+||||||++++|||+| +++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999875 5567779999999999999998 99988 787
Q ss_pred -CCCChhhhHHhhccCCCCCCcceEEEEeccccHHH
Q 009477 343 -FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (534)
Q Consensus 343 -~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~ 377 (534)
.|.+...|+||+||+|| |++|. +.|+++.|...
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999887654
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2e-41 Score=355.90 Aligned_cols=280 Identities=18% Similarity=0.255 Sum_probs=196.3
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHH
Q 009477 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135 (534)
Q Consensus 56 ~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~ 135 (534)
.+++|+|+++.|+||||||++|++|+++.+... +.+++|++||++|+.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~---- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF---- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc----
Confidence 357899999999999999999999999987653 678999999999999999877643 232221110
Q ss_pred HHHHHhCCCCEEEECchHHHHHHHh-------cCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhc-CCCCcEEEEEe
Q 009477 136 QFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSA 207 (534)
Q Consensus 136 ~~~~~~~~~~IiV~Tp~~l~~~l~~-------~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~-~~~~q~ll~SA 207 (534)
-.|+||+++.+++.. .....+.++++||+||+|++ +.++...+..+.... +.++|+++|||
T Consensus 70 ----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 70 ----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp ----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred ----------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 036666655432221 12345889999999999998 333332222222222 36799999999
Q ss_pred eCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHH
Q 009477 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR 287 (534)
Q Consensus 208 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~ 287 (534)
|+++.+..+... ......+.. .+..... ..++..+.+ .++++||||++++.++.+++.|.
T Consensus 139 T~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~-~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~ 198 (440)
T 1yks_A 139 TPPGTSDEFPHS---NGEIEDVQT-------------DIPSEPW-NTGHDWILA---DKRPTAWFLPSIRAANVMAASLR 198 (440)
T ss_dssp SCTTCCCSSCCC---SSCEEEEEC-------------CCCSSCC-SSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCchhhhhhhc---CCCeeEeee-------------ccChHHH-HHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHH
Confidence 998764332221 111111110 1111111 112233332 36899999999999999999999
Q ss_pred HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE-------------------cCCCCChh
Q 009477 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------------------WDFPPKPK 348 (534)
Q Consensus 288 ~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~-------------------~~~p~s~~ 348 (534)
..++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..
T Consensus 199 ~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~ 273 (440)
T 1yks_A 199 KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISAS 273 (440)
T ss_dssp HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHH
T ss_pred HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHH
Confidence 99999999999 3578899999999999999999999999999 999986 88999999
Q ss_pred hhHHhhccCCCC-CCcceEEEEe---ccccHHHHHHHHHHh
Q 009477 349 IFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (534)
Q Consensus 349 ~~~qr~GR~gR~-g~~G~~i~~~---~~~e~~~~~~l~~~~ 385 (534)
+|+||+||+||. |++|.|++|+ ++.|...+..++..+
T Consensus 274 ~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 274 SAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 999999999998 6899999996 677777676666544
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.3e-41 Score=366.67 Aligned_cols=306 Identities=17% Similarity=0.217 Sum_probs=219.9
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 37 AIKRKGYK-----VPTPIQR-----KTMPLIL------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 37 ~l~~~g~~-----~~~~~Q~-----~ai~~il------~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
++..+||. .||++|+ ++||.++ .++|+++.|+||||||++|++|+++.+.. .+.++||++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 56667887 8999999 9999888 89999999999999999999999988765 367899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
||++|+.|+.+.++.+. +. ...+ .... .-..+.-+-+.+.+.+.+.+.. ...+.++++||+||||++
T Consensus 278 PTr~La~Q~~~~l~~~~----i~--~~~~--~l~~---v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGLP----VR--YLTP--AVQR---EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp SSHHHHHHHHHHTTTSC----CE--ECCC-----C---CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhcCC----ee--eecc--cccc---cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc
Confidence 99999999988776542 22 1111 0000 0011223445555555555543 356899999999999998
Q ss_pred ccCChHHHHHHHHHhc-CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHH
Q 009477 181 FGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (534)
+..+...+..+.... +..+|+++||||+++.+..+... +.....+... +... ....++..+
T Consensus 345 -~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~-------------~~~~-~~~~~l~~l 406 (673)
T 2wv9_A 345 -DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSE-------------IPDR-AWSSGFEWI 406 (673)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECC-------------CCSS-CCSSCCHHH
T ss_pred -CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeee-------------cCHH-HHHHHHHHH
Confidence 222222333333333 26799999999998764332211 1111111110 1111 111122333
Q ss_pred HHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEE
Q 009477 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 260 ~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI 339 (534)
. ..++++||||+++++++.+++.|...++.+..+||+ +|+.+++.|++|+.+|||||+++++|+|+| +++||
T Consensus 407 ~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 T---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp H---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred H---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 2 257899999999999999999999999999999994 788999999999999999999999999999 99999
Q ss_pred E--------------------cCCCCChhhhHHhhccCCCC-CCcceEEEEe---ccccHHHHHHHHHHh
Q 009477 340 N--------------------WDFPPKPKIFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (534)
Q Consensus 340 ~--------------------~~~p~s~~~~~qr~GR~gR~-g~~G~~i~~~---~~~e~~~~~~l~~~~ 385 (534)
+ |++|.+..+|+||+||+||. |++|.|++|+ ++.|...+..++..+
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 8 67899999999999999999 7899999996 566766665555443
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-37 Score=301.04 Aligned_cols=212 Identities=36% Similarity=0.573 Sum_probs=196.2
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCCCeEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~---~~~g~~~ 96 (534)
+...+|+++++++.+++++.+.||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+.... ...++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999887532 1346789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcC
Q 009477 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (534)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDE 176 (534)
||++||++|+.|+.+.++.++...++++..++||.....+...+..+++|+|+||++|.+++.. ....+.++++||+||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDE 184 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeC
Confidence 9999999999999999999998889999999999999999888888999999999999999986 567899999999999
Q ss_pred CCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccc
Q 009477 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (534)
Q Consensus 177 ah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (534)
||++.+++|...+..++..+++++|+++||||+|+.+..+++.++.+|..+.+...
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999998887643
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.2e-39 Score=342.36 Aligned_cols=272 Identities=18% Similarity=0.228 Sum_probs=199.6
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHH
Q 009477 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (534)
Q Consensus 55 ~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 134 (534)
..+.+++++++.|+||||||++|++|+++.+.. .+.++||++|||+|+.|+.+.++ ++.+....+....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~- 84 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR- 84 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc-
Confidence 345668999999999999999999999988765 36789999999999999988776 2333322221111
Q ss_pred HHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc-----ccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-----FGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 135 ~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l-----~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
.-..+..+.++|.+.+.+.+.. ...++++++||+||||++ +..+|..... .+...|+++||||+
T Consensus 85 ----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~ 153 (459)
T 2z83_A 85 ----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATP 153 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSC
T ss_pred ----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCC
Confidence 0123456888999988877764 466899999999999984 3333332221 23679999999999
Q ss_pred CHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc
Q 009477 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE 289 (534)
Q Consensus 210 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~ 289 (534)
|..+..+... ..|... +... ++ ......+...+.+ .++++||||+|+..++.+++.|...
T Consensus 154 ~~~~~~~~~~--~~pi~~-~~~~-------------~~-~~~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHD-LQDE-------------IP-DRAWSSGYEWITE---YAGKTVWFVASVKMGNEIAMCLQRA 213 (459)
T ss_dssp TTCCCSSCCC--SSCEEE-EECC-------------CC-SSCCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CcchhhhccC--CCCeEE-eccc-------------CC-cchhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHHHHhc
Confidence 8764332211 222221 1100 00 0111112233333 2679999999999999999999999
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEE--------------------cCCCCChhh
Q 009477 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN--------------------WDFPPKPKI 349 (534)
Q Consensus 290 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~--------------------~~~p~s~~~ 349 (534)
++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.+..+
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999999985 6778899999999999999999999999999 99999 779999999
Q ss_pred hHHhhccCCCCCC-cceEEEEeccc
Q 009477 350 FVHRVGRAARAGR-TGTAFSFVTSE 373 (534)
Q Consensus 350 ~~qr~GR~gR~g~-~G~~i~~~~~~ 373 (534)
|+||+||+||.|+ +|.+++|+.+.
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999997 89999999875
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.1e-37 Score=326.59 Aligned_cols=270 Identities=17% Similarity=0.218 Sum_probs=197.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (534)
+|+++++.|+||||||++|++|+++.+.. .|.+++|++||++|+.|+.+.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 37899999999999999999999977654 36789999999999999887664 4556655553221
Q ss_pred HHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHh-cCCCCcEEEEEeeCCHHHHHHH
Q 009477 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ-LSENRQTLLFSATLPSALAEFA 217 (534)
Q Consensus 139 ~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~-~~~~~q~ll~SAT~~~~~~~~~ 217 (534)
.-..+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +.++......+... .+.++|+++||||+++.+..+.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1123566788899998877765 466899999999999997 43334343333333 2568999999999987532211
Q ss_pred HhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeec
Q 009477 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (534)
Q Consensus 218 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~ 297 (534)
. .++....+... + ...+...+...+.+ .++++||||+++++++.+++.|...++.+..+|
T Consensus 143 ~---~~~~i~~~~~~-------------~-~~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 143 P---SNSPIIDEETR-------------I-PDKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp C---CSSCCEEEECC-------------C-CSSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred C---CCCceeecccc-------------C-CHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 1 11111111110 0 11111223344443 367999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCE-----------------EEEcCCCCChhhhHHhhccCCCC
Q 009477 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------------VINWDFPPKPKIFVHRVGRAARA 360 (534)
Q Consensus 298 g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~-----------------VI~~~~p~s~~~~~qr~GR~gR~ 360 (534)
|+ .|+.+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 577899999999999999999999999999 655 67889999999999999999999
Q ss_pred CC-cceEEEEec
Q 009477 361 GR-TGTAFSFVT 371 (534)
Q Consensus 361 g~-~G~~i~~~~ 371 (534)
|. .|.++.+..
T Consensus 278 g~~~~~~~~~~~ 289 (431)
T 2v6i_A 278 PEKLGDIYAYSG 289 (431)
T ss_dssp TTCCCCEEEECS
T ss_pred CCCCCeEEEEcC
Confidence 85 566666653
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-36 Score=285.45 Aligned_cols=203 Identities=32% Similarity=0.615 Sum_probs=187.5
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
+.+|++++|++.+++++.++||..|+|+|+++++.+++++++++.+|||||||++|++|+++.+... ..+.++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 5689999999999999999999999999999999999999999999999999999999999987643 24578999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc
Q 009477 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l 180 (534)
|++|+.|+.+.++.+.... ++.+..++|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHh
Confidence 9999999999999998776 7899999999998888888888999999999999998876 4567889999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEE
Q 009477 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (534)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i 227 (534)
.+.+|...+..++..++.++|++++|||+|+.+..+++.++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999899999999999999999999999998655
No 53
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=294.81 Aligned_cols=206 Identities=37% Similarity=0.635 Sum_probs=191.7
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
..+|+++++++.+++++..+||..|+++|+++++.+++|+++++.|+||||||++|++|+++.+.... .+.++||++|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--~~~~~lil~P 119 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--QRLFALVLTP 119 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--CSSCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--CCceEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999887642 3567999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
|++|+.|+.+.++.++...++++..++||.....+...+..+++|+|+||++|.+.+.....+.+.++++||+||||++.
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999999998889999999999998888888888999999999999999886556778999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEe
Q 009477 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (534)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~ 229 (534)
+++|...+..++..++.++|+++||||+++.+..+++.++.+|..+.+
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999988765
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.5e-37 Score=304.64 Aligned_cols=205 Identities=33% Similarity=0.573 Sum_probs=185.0
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
..+|++++|++.++++|..+||..|||+|.+++|.++.| +|++++|+||||||++|++|+++.+... ..++++|||
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~lil 168 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 168 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEEE
Confidence 458999999999999999999999999999999999997 9999999999999999999999998654 246689999
Q ss_pred cCcHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
+|||+||.|+.+.++.++... ++.+...+||....... ..+++|+|+||++|.+++.+.+.+.++++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999998764 78899999887654332 45789999999999999976566789999999999999
Q ss_pred cccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecc
Q 009477 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (534)
Q Consensus 179 ~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~ 231 (534)
++++ .+|...+..++..++.++|+++||||+|+.+..+++.++.+|..+.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9997 7899999999999999999999999999999999999999999887753
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.3e-37 Score=293.64 Aligned_cols=209 Identities=36% Similarity=0.608 Sum_probs=183.8
Q ss_pred cCCCCCCcCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CCC
Q 009477 18 KKSKSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQG 92 (534)
Q Consensus 18 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~----~~~ 92 (534)
..+...+|++ +++++.+++++.+.||..|+|+|.++++.+++|+|+++.||||||||++|++|++..+.... ...
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3456778999 79999999999999999999999999999999999999999999999999999998876421 125
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.++||++||++|+.|+.+.++.++ ..++++..++||.....+...+..+++|+|+||+++.+++.. ....+.++++|
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~l 171 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYL 171 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEE
Confidence 7789999999999999999999986 568899999999988888888889999999999999998876 56778999999
Q ss_pred EEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEE
Q 009477 173 VFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (534)
Q Consensus 173 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~ 228 (534)
|+||||++.+++|...+..++..++.++|++++|||+|+.+..+++.++.+|..+.
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999998764
No 56
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=8.5e-37 Score=297.49 Aligned_cols=220 Identities=37% Similarity=0.597 Sum_probs=190.6
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-------CCCC
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGG 93 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-------~~~g 93 (534)
...+|++++|++.++++|..+||..|+|+|.++++.+++|+|+++.|+||||||++|++|+++.+.... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 456799999999999999999999999999999999999999999999999999999999999886532 1235
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEE
Q 009477 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (534)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iV 173 (534)
.++||++||++|+.|+.+.++.++...++++..++||.....+...+..+++|+|+||++|.+++.. ..+.++++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEE
Confidence 6899999999999999999999998889999999999998888888888999999999999999886 456789999999
Q ss_pred EcCCCccccCChHHHHHHHHHh--cCC--CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceE
Q 009477 174 FDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241 (534)
Q Consensus 174 iDEah~l~~~~~~~~~~~i~~~--~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~ 241 (534)
+||||++.+++|...+..++.. .+. .+|+++||||+|+.+..+++.++.+|..+.+.......+.+++
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999985 444 6899999999999999999999999998888766544444443
No 57
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.8e-36 Score=329.31 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=190.2
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCCCeEEEEEcCcHHHHHHHH-HHH
Q 009477 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTL-KFT 113 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~----~-~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-----~~~g~~~Lil~PtreLa~Q~~-~~~ 113 (534)
.|+|+|.++++.++. + +++++.++||||||++++..+. .+.... ...++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998876 4 6699999999999999765444 443321 114678999999999999998 666
Q ss_pred HHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHh---cCCCCCCCeeEEEEcCCCccccCChHHHHH
Q 009477 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE---VEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (534)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~---~~~~~l~~~~~iViDEah~l~~~~~~~~~~ 190 (534)
+.|+ ..+..+.++. ...+.+|+|+||++|...... ...+....+++||+||||++...+ ...+.
T Consensus 257 ~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 6654 3344443322 235789999999999877542 123567789999999999987643 34566
Q ss_pred HHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCC------------------CeEEEeccccccC-------------CCc
Q 009477 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRD------------------PHLVRLDVDTKIS-------------PDL 239 (534)
Q Consensus 191 ~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~------------------~~~i~~~~~~~~~-------------~~~ 239 (534)
.++..++ +.+++++||||...........++. +..+.+....... ..+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777776 5789999999874322212222222 2222222111000 000
Q ss_pred eEEEEEech-------hhHHHHHHHH----HHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCC--------ceeecCCC
Q 009477 240 KLAFFTLRQ-------EEKHAALLYM----IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE--------PSVCYGDM 300 (534)
Q Consensus 240 ~~~~~~~~~-------~~k~~~L~~~----l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~--------~~~l~g~~ 300 (534)
....+.... ..+...+... +... ...+++||||+++.+++.+++.|...+.. +..+||++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000000000 1122232222 3322 45689999999999999999999876432 66788887
Q ss_pred CHHHHHHHHHHHhcCCcE---EEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCC
Q 009477 301 DQDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (534)
Q Consensus 301 ~~~~r~~~~~~F~~g~~~---iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~ 362 (534)
++ +|+.++++|++|+.+ |||+|+++++|+|+|++++||++++|.++..|+||+||+||.+.
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 799999999998876 88999999999999999999999999999999999999999764
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=287.61 Aligned_cols=209 Identities=36% Similarity=0.669 Sum_probs=188.0
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC--CCCCeEEEEE
Q 009477 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALIL 99 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~--~~~g~~~Lil 99 (534)
..+|+++++++.+++++.+.||..|+|+|.++++.+++|+++++.++||||||++|++|+++.+.... ...+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999876432 1246789999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
+||++|+.|+.+.++.++...++++..++||.....+...+ .+++|+|+||++|.+.+.....+.+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988889999999998877666555 57999999999999998875457788999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecc
Q 009477 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (534)
Q Consensus 180 l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~ 231 (534)
+.+++|...+..++..++..+|++++|||+|+.+..+++.++.+|..+.++.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999998887643
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-36 Score=289.02 Aligned_cols=206 Identities=32% Similarity=0.584 Sum_probs=186.8
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.+|+++++++.+++++.+.||..|+|+|+++++.+++|+++++.++||||||++|++|+++.+... ..+.++||++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPT 81 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCc
Confidence 579999999999999999999999999999999999999999999999999999999999987653 235789999999
Q ss_pred HHHHHHHHHHHHHhhccC----CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 103 RDLALQTLKFTKELGRYT----DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~----~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
++|+.|+.+.+++++... ++.+..++||.....+...+..+++|+|+||+++.+.+.. ..+.+.++++||+||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCch
Confidence 999999999999988766 7889999999877766655566899999999999998876 55778899999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEecc
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~ 231 (534)
++.+++|...+..++..++...|++++|||+|+++..+++.++.+|..+.+..
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999999999999999999999999998876543
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.6e-36 Score=286.99 Aligned_cols=206 Identities=33% Similarity=0.534 Sum_probs=185.3
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
....+|+++++++.+.+.+.+.||..|+|+|.++++.+++|+|+++.++||||||++|++|+++.+... ..+.++||+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~lil 98 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQILIL 98 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999987643 246789999
Q ss_pred cCcHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
+||++|+.|+.+.++.++... ++++..++||.....+...+ .+++|+|+||++|.+++.. ..+.+.++++||+||||
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEAD 176 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCch
Confidence 999999999999999998664 89999999998887776655 5799999999999998875 55778899999999999
Q ss_pred ccccCC-hHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEe
Q 009477 179 CLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (534)
Q Consensus 179 ~l~~~~-~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~ 229 (534)
++.+++ |...+..++..++..+|++++|||+|+.+..++..++.+|..+.+
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999997 999999999999999999999999999999999999999987754
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.3e-36 Score=290.50 Aligned_cols=208 Identities=33% Similarity=0.577 Sum_probs=179.0
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
....+|++++|++.+++++.+.||..|+|+|.++++.+++|+|+++.|+||||||++|++|+++.+... ..+.++||+
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil 104 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVL 104 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999987643 235689999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCC-CCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
+||++|+.|+.+.++.++...++.+..++||.....+...+..+ ++|+|+||++|.+.+.. ..+.+.++++||+||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCch
Confidence 99999999999999999988889999999998877776666555 89999999999999876 45778899999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEec
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (534)
++.+++|...+..++..++..+|++++|||+|+.+..+++.++.+|..+.++
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999887654
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=293.48 Aligned_cols=205 Identities=39% Similarity=0.623 Sum_probs=184.4
Q ss_pred CCCcCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC--CCCCeEEE
Q 009477 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRAL 97 (534)
Q Consensus 22 ~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~--~~~g~~~L 97 (534)
..+|++++ +++.+++++.++||..|+|+|.++++.++.|+|++++|+||||||++|++|+++.+.... ...+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 34677777 999999999999999999999999999999999999999999999999999999887532 12467899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
|++||++|+.|+.+.+++++...++.+..++||.....+...+..+++|+|+||+++.+++.....+.+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999888999999999999888888888889999999999999988755678899999999999
Q ss_pred CccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeE
Q 009477 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHL 226 (534)
Q Consensus 178 h~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~ 226 (534)
|++.+++|...+..++..++..+|+++||||+|+.+..+++.++.++..
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999999886543
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=8.2e-34 Score=301.72 Aligned_cols=319 Identities=20% Similarity=0.225 Sum_probs=243.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|.. |++.|.-..-.+..|+ |+...||+|||+++.+|++-... .|+.+.|++|++.||.|-++++..+..+.
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-----~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-----IGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-----cCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 5776 9999999988888886 99999999999999999975543 26679999999999999999999999999
Q ss_pred CCeEEEEEcC--------------------------------------------------CCHHHHHHHHhCCCCEEEEC
Q 009477 121 DLRISLLVGG--------------------------------------------------DSMESQFEELAQNPDIIIAT 150 (534)
Q Consensus 121 ~l~~~~~~gg--------------------------------------------------~~~~~~~~~~~~~~~IiV~T 150 (534)
|+++++++.. .+..+ +.-.-.+||.+||
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCEEcc
Confidence 9999999982 11111 1112357999999
Q ss_pred chHH-HHHHHhc-----CCCCCCCeeEEEEcCCCccc-----------cC--C---hHHHHHHHHHhc------------
Q 009477 151 PGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-----------GM--G---FAEQLHKILGQL------------ 196 (534)
Q Consensus 151 p~~l-~~~l~~~-----~~~~l~~~~~iViDEah~l~-----------~~--~---~~~~~~~i~~~~------------ 196 (534)
...| ++.|..+ ...-...+.+.|+||+|.++ .+ . ....+..++..+
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9876 5555532 11224568899999999654 00 0 011111111100
Q ss_pred --------------------------------------------CC----------------------------------
Q 009477 197 --------------------------------------------SE---------------------------------- 198 (534)
Q Consensus 197 --------------------------------------------~~---------------------------------- 198 (534)
..
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 00
Q ss_pred ---------------------------CCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceE-EEEEechhh
Q 009477 199 ---------------------------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL-AFFTLRQEE 250 (534)
Q Consensus 199 ---------------------------~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~ 250 (534)
-.++.+||||...+..+|.+.|.- ..+.++..... ..... ..+.....+
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~IPtnkp~-~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVIPTHKPM-IRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEECCCSSCC-CCEECCCEEESSHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEECCCCCc-ceeecCcEEEecHHH
Confidence 025889999999988888887743 34555443322 22222 345567788
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
|..+++..+.+....+.++||||+|++.++.++..|...|+++..+||+..+.++..+...++.| .|+|||++|+||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 99999999987666688999999999999999999999999999999995555555555666665 5999999999999
Q ss_pred CCC--------CCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 331 DIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 331 Dip--------~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
||+ +..+||++++|.+...|+||+||+||+|.+|.+++|++.+|
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 998 66799999999999999999999999999999999999887
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.9e-35 Score=277.46 Aligned_cols=203 Identities=39% Similarity=0.638 Sum_probs=186.0
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCc
Q 009477 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPT 102 (534)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-~~~g~~~Lil~Pt 102 (534)
+|+++++++.+++.+.+.||..|+|+|+++++.+++++++++.+|||||||.+|++|+++.+.... ...+.++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 699999999999999999999999999999999999999999999999999999999999886422 2346789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc
Q 009477 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (534)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~ 182 (534)
++|+.|+.+.++.+... +++..++||.....+...+..+++|+|+||+++.+.+.. ..+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999998754 788899999988888888888999999999999999886 567789999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEe
Q 009477 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (534)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~ 229 (534)
.+|...+..++..++..+|++++|||+|+.+..+++.++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999988765
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.1e-35 Score=282.16 Aligned_cols=210 Identities=31% Similarity=0.547 Sum_probs=180.9
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Li 98 (534)
.+...+|+++++++.+++.+.+.||..|+|+|+++++.+++|+++++.+|||||||.+|++|+++.+... ..+.++||
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~li 87 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALM 87 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEE
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988654 24578999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
++||++|+.|+.+.++.++...++++..++||.....+...+.. ++|+|+||++|.+.+.. ....+.++++||+||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEAD 165 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChh
Confidence 99999999999999999998889999999999877766655544 99999999999998876 56778999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccc
Q 009477 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (534)
Q Consensus 179 ~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (534)
++.+++|...+..++..++...|++++|||+|+.+..+++.++.+|..+.++.+
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999988876543
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.8e-35 Score=337.51 Aligned_cols=318 Identities=19% Similarity=0.192 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 009477 44 KVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~--~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (534)
.+|+|+|.+++..++.. .++++.++||+|||.+++..+.+.+... ...++|||||+ .|+.||.+.+.+.. +
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~f---~ 224 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRRF---N 224 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHHS---C
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHHh---C
Confidence 36999999999988764 5799999999999999988777665543 23479999999 99999998875543 5
Q ss_pred CeEEEEEcCCCHHHHHHH---HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChH-HHHHHHHHh-c
Q 009477 122 LRISLLVGGDSMESQFEE---LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA-EQLHKILGQ-L 196 (534)
Q Consensus 122 l~~~~~~gg~~~~~~~~~---~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~-~~~~~i~~~-~ 196 (534)
+++..+.|+.. ...... .....+|+|+|++.+.........+...++++||+||||++.+.+.. ......+.. .
T Consensus 225 l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 225 LRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 66666655332 211111 11257899999998864321111233557999999999999764421 111222222 2
Q ss_pred CCCCcEEEEEeeCCH----HHHH----------------------------HHHhcCCC---------------------
Q 009477 197 SENRQTLLFSATLPS----ALAE----------------------------FAKAGLRD--------------------- 223 (534)
Q Consensus 197 ~~~~q~ll~SAT~~~----~~~~----------------------------~~~~~l~~--------------------- 223 (534)
....+++++||||.. ++.. ........
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 245679999999832 0000 00000000
Q ss_pred -------------------------------CeEEEecccc-ccC--CCceEEEE-------------------------
Q 009477 224 -------------------------------PHLVRLDVDT-KIS--PDLKLAFF------------------------- 244 (534)
Q Consensus 224 -------------------------------~~~i~~~~~~-~~~--~~~~~~~~------------------------- 244 (534)
...++..... ... ........
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 0000000000 000 00000011
Q ss_pred --------------------EechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHH-cCCCceeecCCCCHH
Q 009477 245 --------------------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQD 303 (534)
Q Consensus 245 --------------------~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~-~~~~~~~l~g~~~~~ 303 (534)
.+....|...|..++.. ..++++||||+++.+++.++..|.. .|+.+..+||++++.
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 11223467788888876 3688999999999999999999995 599999999999999
Q ss_pred HHHHHHHHHhcCC--cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEec
Q 009477 304 ARKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (534)
Q Consensus 304 ~r~~~~~~F~~g~--~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~ 371 (534)
+|+.+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.++++..
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999998 9999999999999999999999999999999999999999999999986655543
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=9.8e-36 Score=324.74 Aligned_cols=312 Identities=17% Similarity=0.209 Sum_probs=219.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 009477 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (534)
Q Consensus 31 ~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~ 110 (534)
..+.++++.+.++ |..+ ......+++++++++||||||||+ ++++.+... .+.+|++|||+||.|++
T Consensus 130 ~~d~l~~i~dl~~--p~~~--~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-----~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNW--YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----KSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp CHHHHHHHTBCCC--GGGG--CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----SSEEEEESSHHHHHHHH
T ss_pred CHHHHHHHhhccC--hhhh--CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----CCeEEEeCHHHHHHHHH
Confidence 3444555544332 3322 223345688999999999999998 334444432 23599999999999999
Q ss_pred HHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHH
Q 009477 111 KFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (534)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~ 190 (534)
+.++.. ++.+..++|+..... ..-....+++++|++.+. ....+++|||||||++.+.++...+.
T Consensus 197 ~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~ 261 (677)
T 3rc3_A 197 EKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWT 261 (677)
T ss_dssp HHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHH
Confidence 988876 578888988765300 000012456666654321 24678999999999999999999999
Q ss_pred HHHHhcC-CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeE
Q 009477 191 KILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (534)
Q Consensus 191 ~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~ 269 (534)
.++..++ ...+++++|||. +.+..+.... ..+..+... ... ... .+. .. . +..+.. .....
T Consensus 262 ~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~--~r~-~~l--~~~--~~--~----l~~l~~---~~~g~ 323 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY--KRL-TPI--SVL--DH--A----LESLDN---LRPGD 323 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC--CCS-SCE--EEC--SS--C----CCSGGG---CCTTE
T ss_pred HHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe--eec-chH--HHH--HH--H----HHHHHh---cCCCC
Confidence 9998887 678999999995 3344444433 222222111 110 011 010 00 0 001111 13456
Q ss_pred EEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc--CCcEEEEEeCcccccCCCCCCCEEEEcCC----
Q 009477 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDF---- 343 (534)
Q Consensus 270 IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~--g~~~iLI~Tdv~a~GlDip~v~~VI~~~~---- 343 (534)
||||+|++.++.+++.|...++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|+|+ ++++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred ----------CCChhhhHHhhccCCCCCCc---ceEEEEeccccHHHHHHHHHHhCCCcc
Q 009477 344 ----------PPKPKIFVHRVGRAARAGRT---GTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 344 ----------p~s~~~~~qr~GR~gR~g~~---G~~i~~~~~~e~~~~~~l~~~~~~~~~ 390 (534)
|.+..+|+||+||+||.|.. |.|+.+ .+.+...+..+......++.
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCCC
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchhh
Confidence 88999999999999999965 655544 45555566555444433333
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.5e-35 Score=277.95 Aligned_cols=206 Identities=29% Similarity=0.562 Sum_probs=183.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil 99 (534)
....+|++++|++.+++++.+.||..|+|+|.++++.+++++++++.++||||||.+|++|+++.+... ..+.++||+
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 88 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVM 88 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEE
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEE
Confidence 345679999999999999999999999999999999999999999999999999999999999987543 234589999
Q ss_pred cCcHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHHHHHhC-CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
+||++|+.|+.+.++++.... ++++..++||.....+...+.. .++|+|+||+++.+.+.. ..+.+.+++++|+|||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDEC 167 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESH
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCH
Confidence 999999999999999998775 8999999999988777766654 579999999999998876 5577899999999999
Q ss_pred Ccccc-CChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEE
Q 009477 178 DCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (534)
Q Consensus 178 h~l~~-~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~ 228 (534)
|++.+ .+|...+..++...+.++|++++|||+|+.+..+++.++.+|..+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 5788899999999998999999999999999999999999997764
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.3e-34 Score=304.56 Aligned_cols=312 Identities=17% Similarity=0.241 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|+|+|.++++.+. .++++++.++||+|||.+++..+....... ...++|||||+ .|+.||.+.++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~---~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN---ELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT---CCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---CCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 59999999998763 478899999999999999765544433222 34579999995 688999999999863
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCC
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~ 200 (534)
++++..+.|+... ......+|+|+||+++..... +....+++||+||||++.+.+ ......+..++ ..
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 4667766665532 112467999999999875543 334578999999999998764 23344555554 46
Q ss_pred cEEEEEeeCCHH-HHHH---H---------------------------------HhcCCCCeEEEecccc----ccCCCc
Q 009477 201 QTLLFSATLPSA-LAEF---A---------------------------------KAGLRDPHLVRLDVDT----KISPDL 239 (534)
Q Consensus 201 q~ll~SAT~~~~-~~~~---~---------------------------------~~~l~~~~~i~~~~~~----~~~~~~ 239 (534)
+.+++||||... +.++ . ...+ .|..++-.... ...+..
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCC
Confidence 789999998431 1111 1 1111 12222211100 011111
Q ss_pred eEEEEEec---------------------------------------------------------hhhHHHHHHHHHHHh
Q 009477 240 KLAFFTLR---------------------------------------------------------QEEKHAALLYMIREH 262 (534)
Q Consensus 240 ~~~~~~~~---------------------------------------------------------~~~k~~~L~~~l~~~ 262 (534)
....+.+. ...|...+.+++.+.
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 11112111 123455566777776
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcC-CcE-EEEEeCcccccCCCCCCCEEE
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIVTDVAARGIDIPLLDNVI 339 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~-iLI~Tdv~a~GlDip~v~~VI 339 (534)
...+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ +.+ +|++|+++++|+|+|.+++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 678899999999999999999999885 99999999999999999999999998 555 789999999999999999999
Q ss_pred EcCCCCChhhhHHhhccCCCCCCcceE--EEEeccccH
Q 009477 340 NWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (534)
Q Consensus 340 ~~~~p~s~~~~~qr~GR~gR~g~~G~~--i~~~~~~e~ 375 (534)
++|+|+++..|.||+||++|.|+.+.+ +.++..+..
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 999999999999999999999987554 666766543
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=279.25 Aligned_cols=212 Identities=34% Similarity=0.553 Sum_probs=181.2
Q ss_pred CCCCCcCCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeE
Q 009477 20 SKSGGFESL----NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95 (534)
Q Consensus 20 ~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~ 95 (534)
....+|+++ ++++.+++++.++||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+.... ..+.+
T Consensus 22 ~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~ 100 (245)
T 3dkp_A 22 DPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-NKGFR 100 (245)
T ss_dssp CCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-SSSCC
T ss_pred CcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-cCCce
Confidence 345678887 8999999999999999999999999999999999999999999999999999999886432 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHH-HHHhCCCCEEEECchHHHHHHHhcC-CCCCCCeeEEE
Q 009477 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-EELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVV 173 (534)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~-~~~~~~~~IiV~Tp~~l~~~l~~~~-~~~l~~~~~iV 173 (534)
+||++||++|+.|+.+.+++++...++++..++|+......+ .....+++|+|+||++|.+++.... .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 999999999999999999999988889888887764333222 1223578999999999999987632 46789999999
Q ss_pred EcCCCcccc---CChHHHHHHHHHhc-CCCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccc
Q 009477 174 FDEADCLFG---MGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (534)
Q Consensus 174 iDEah~l~~---~~~~~~~~~i~~~~-~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (534)
+||||++.+ .+|...+..++..+ +.+.|+++||||+|+++..+++.++.+|..+.+...
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999987 67899999998776 457899999999999999999999999998887654
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=4.9e-33 Score=315.48 Aligned_cols=314 Identities=17% Similarity=0.143 Sum_probs=216.4
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 009477 44 KVPTPIQRKTMPLILS--------------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~--------------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (534)
..|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ....++|||+|+++|+.|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~ 346 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQT 346 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHH
Confidence 3599999999998875 368999999999999997 6666555432 2346899999999999999
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh-CCCCEEEECchHHHHHHHhcCCC-CCCCeeEEEEcCCCccccCChHH
Q 009477 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAE 187 (534)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~-~l~~~~~iViDEah~l~~~~~~~ 187 (534)
.+.++.++.. .+.++.+...+...+. .+++|+|+||++|...+.....+ .+....+||+||||++.. ..
T Consensus 347 ~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~ 417 (1038)
T 2w00_A 347 MKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GE 417 (1038)
T ss_dssp HHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HH
T ss_pred HHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hH
Confidence 9998888643 1235555556655564 57899999999999887653222 356789999999999763 33
Q ss_pred HHHHHHHhcCCCCcEEEEEeeCCHH--------HHH-------------HHHhcCCCCeEEEecc-cccc----CC-C--
Q 009477 188 QLHKILGQLSENRQTLLFSATLPSA--------LAE-------------FAKAGLRDPHLVRLDV-DTKI----SP-D-- 238 (534)
Q Consensus 188 ~~~~i~~~~~~~~q~ll~SAT~~~~--------~~~-------------~~~~~l~~~~~i~~~~-~~~~----~~-~-- 238 (534)
....+...+| +.++++|||||... ... ....+..-|..+.... .... .. .
T Consensus 418 ~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~ 496 (1038)
T 2w00_A 418 AQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEK 496 (1038)
T ss_dssp HHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHH
T ss_pred HHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHH
Confidence 4556667776 57999999998642 111 1112222222211110 0000 00 0
Q ss_pred ----ceEEEEEechhhHHHHHHHHHHHhc----------CCCCeEEEEEcChhhHHHHHHHHHHcC------------CC
Q 009477 239 ----LKLAFFTLRQEEKHAALLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEG------------LE 292 (534)
Q Consensus 239 ----~~~~~~~~~~~~k~~~L~~~l~~~~----------~~~~~~IVF~~t~~~~e~l~~~L~~~~------------~~ 292 (534)
+.... .+....+...+...+.+.. ..+.++||||+|+.+|..+++.|...+ ++
T Consensus 497 ~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 497 KLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 00000 0011223333333222211 134689999999999999999998754 45
Q ss_pred ce-eecCC----------C----------CHH-----------------------------HHHHHHHHHhcCCcEEEEE
Q 009477 293 PS-VCYGD----------M----------DQD-----------------------------ARKIHVSRFRARKTMFLIV 322 (534)
Q Consensus 293 ~~-~l~g~----------~----------~~~-----------------------------~r~~~~~~F~~g~~~iLI~ 322 (534)
+. ++||+ + ++. .|+.++++|++|+++|||+
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 54 44432 2 221 4788899999999999999
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCc----ceEEEEecc
Q 009477 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT----GTAFSFVTS 372 (534)
Q Consensus 323 Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~----G~~i~~~~~ 372 (534)
|+++.+|+|+|.+ +++++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999999 789999999999999999999998753 888888864
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=291.71 Aligned_cols=320 Identities=17% Similarity=0.229 Sum_probs=232.8
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~~il----~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
+|+|+|.+++..++ .++++|+..+||+|||...+..+...+.... .+.++||||| ..|+.||.+.+.+++ .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--QNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--CCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--CCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 69999999998665 6889999999999999987766655443322 2345899999 678899999998886 4
Q ss_pred CCeEEEEEcCCCHHHHHHHH------------hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHH
Q 009477 121 DLRISLLVGGDSMESQFEEL------------AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~------------~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~ 188 (534)
++++..++|+.......... ....+|+|+|++.+...... +.-..+++||+||||++-+.. ..
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--hH
Confidence 57788777776554443322 23578999999999876543 333468999999999997643 34
Q ss_pred HHHHHHhcCCCCcEEEEEeeCC----HHHHHHHHhcCC-----------------------------CCeEEEecccccc
Q 009477 189 LHKILGQLSENRQTLLFSATLP----SALAEFAKAGLR-----------------------------DPHLVRLDVDTKI 235 (534)
Q Consensus 189 ~~~i~~~~~~~~q~ll~SAT~~----~~~~~~~~~~l~-----------------------------~~~~i~~~~~~~~ 235 (534)
....+..++ ....+++||||- .++..+.+.... .|..++-......
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 445555554 455799999982 222222211110 1111111111000
Q ss_pred --CCCceEEEEEec------------------------------------------------------------------
Q 009477 236 --SPDLKLAFFTLR------------------------------------------------------------------ 247 (534)
Q Consensus 236 --~~~~~~~~~~~~------------------------------------------------------------------ 247 (534)
.+......+.+.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 111111111111
Q ss_pred ---------hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc-
Q 009477 248 ---------QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT- 317 (534)
Q Consensus 248 ---------~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~- 317 (534)
...|...|..++......+.++|||+.....++.+...|...|+.+..+||+++..+|..+++.|+++..
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 1235566777777777788999999999999999999999999999999999999999999999998665
Q ss_pred --EEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCc--ceEEEEeccccH
Q 009477 318 --MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (534)
Q Consensus 318 --~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~--G~~i~~~~~~e~ 375 (534)
.+|++|++++.|+|++.+++||+||+|+|+..+.||+||++|.|+. ..++.|++.+-+
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 4899999999999999999999999999999999999999999986 455777777643
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=5.1e-29 Score=269.53 Aligned_cols=319 Identities=19% Similarity=0.220 Sum_probs=242.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
.|+ .|+|+|..++|.+++|+ |+.++||||||++|.+|++.... .|.+++|++||++||.|.++++..+.++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 799 79999999999999998 99999999999999999965443 25679999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHH-HHHHHhcC-----CCCCC---CeeEEEEcCCCccc-cCC------
Q 009477 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLK---SVEYVVFDEADCLF-GMG------ 184 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~l~---~~~~iViDEah~l~-~~~------ 184 (534)
++++++++||.+.... ....+++|+||||++| ++++...- .+.+. ++.++|+||+|+++ +.+
T Consensus 148 GLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 148 GLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp TCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 9999999999875433 3345799999999999 88887631 24577 89999999999876 211
Q ss_pred ---------hHHHHHHHHHhcCC---------------------------------------------------------
Q 009477 185 ---------FAEQLHKILGQLSE--------------------------------------------------------- 198 (534)
Q Consensus 185 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 198 (534)
....+..++..++.
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 11122222222110
Q ss_pred ------------------------------------------------------------------------CCcEEEEE
Q 009477 199 ------------------------------------------------------------------------NRQTLLFS 206 (534)
Q Consensus 199 ------------------------------------------------------------------------~~q~ll~S 206 (534)
-.++.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 01477899
Q ss_pred eeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHH
Q 009477 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF 286 (534)
Q Consensus 207 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L 286 (534)
+|...+-.+|.+.|--+ .+.++........-....+.....+|..++...+.+....+.++||+|.|....|.++..|
T Consensus 386 GTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L 463 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQML 463 (997)
T ss_dssp SSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHH
Confidence 99888877887777544 3444443322221122234456678999999888888788999999999999999999999
Q ss_pred H----------------------------------------------------------------------------HcC
Q 009477 287 R----------------------------------------------------------------------------EEG 290 (534)
Q Consensus 287 ~----------------------------------------------------------------------------~~~ 290 (534)
. ..|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 543 (997)
T 2ipc_A 464 KEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQG 543 (997)
T ss_dssp HCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcC
Confidence 8 567
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCC-cEEEEEeCcccccCCCCCC-------------------C--------------
Q 009477 291 LEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL-------------------D-------------- 336 (534)
Q Consensus 291 ~~~~~l~g~~~~~~r~~~~~~F~~g~-~~iLI~Tdv~a~GlDip~v-------------------~-------------- 336 (534)
++..++.......+-+.+-+ .|+ -.|-|||.||+||.||.-- .
T Consensus 544 I~H~VLNAK~he~EAeIIAq---AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (997)
T 2ipc_A 544 IPHQVLNAKHHAREAEIVAQ---AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGK 620 (997)
T ss_dssp CCCCEECSSSHHHHHHHHHT---TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTC
T ss_pred CCeeeccccchHHHHHHHHh---cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccc
Confidence 77777776643333222222 233 4599999999999999743 1
Q ss_pred -----------------------------------------EEEEcCCCCChhhhHHhhccCCCCCCcceEEEEecccc
Q 009477 337 -----------------------------------------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (534)
Q Consensus 337 -----------------------------------------~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e 374 (534)
+||.-..+.|...=.|..||+||.|.+|.+..|++-+|
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 621 EEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred hhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78988899999999999999999999999988887655
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.6e-30 Score=279.28 Aligned_cols=322 Identities=17% Similarity=0.200 Sum_probs=223.1
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CCCeEEEEEcCcHHHHHHHHHHH
Q 009477 45 VPTPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 45 ~~~~~Q~~ai~~il---------~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~--~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
.|+|+|.+++..+. .+..+|+..+||+|||..++..+...+..... ....++||++|+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999998874 34679999999999999988777665543321 123469999997 8899999999
Q ss_pred HHhhccCCCeEEEEEcCCCHHH--HHHHHhC------CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCCh
Q 009477 114 KELGRYTDLRISLLVGGDSMES--QFEELAQ------NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (534)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~--~~~~~~~------~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~ 185 (534)
.++... .+.+..+.+|..... ....... ..+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh-
Confidence 988654 466666777654322 1112111 47899999999876543 3455678999999999998754
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeeCCHH-------H------------HHHHHhcC-------------------------
Q 009477 186 AEQLHKILGQLSENRQTLLFSATLPSA-------L------------AEFAKAGL------------------------- 221 (534)
Q Consensus 186 ~~~~~~i~~~~~~~~q~ll~SAT~~~~-------~------------~~~~~~~l------------------------- 221 (534)
......+..+. ....+++||||-.+ + ..|.+.+.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 23333444453 45789999998321 0 01111000
Q ss_pred ----CCCeEEEeccccc--cCCCceEEEEEec------------------------------------------------
Q 009477 222 ----RDPHLVRLDVDTK--ISPDLKLAFFTLR------------------------------------------------ 247 (534)
Q Consensus 222 ----~~~~~i~~~~~~~--~~~~~~~~~~~~~------------------------------------------------ 247 (534)
-.|..++-..+.. ..+......+.+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000111000000 0111111111111
Q ss_pred ------------------------------hhhHHHHHHHHHHHhc-CCCCeEEEEEcChhhHHHHHHHHHHcCCCceee
Q 009477 248 ------------------------------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (534)
Q Consensus 248 ------------------------------~~~k~~~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l 296 (534)
...|...|..++.... ..+.++|||+++...++.+...|...|+.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0112223333333221 247899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCc---EEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcc--eEEEEec
Q 009477 297 YGDMDQDARKIHVSRFRARKT---MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVT 371 (534)
Q Consensus 297 ~g~~~~~~r~~~~~~F~~g~~---~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G--~~i~~~~ 371 (534)
||++++.+|..++++|++++. .+|++|+++++|+|++.+++||+||+|+++..+.|++||++|.|+.. .++.+++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 999999999999999999876 48999999999999999999999999999999999999999999864 5566777
Q ss_pred ccc
Q 009477 372 SED 374 (534)
Q Consensus 372 ~~e 374 (534)
.+.
T Consensus 527 ~~t 529 (644)
T 1z3i_X 527 TGT 529 (644)
T ss_dssp TTS
T ss_pred CCC
Confidence 664
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=8.3e-29 Score=271.78 Aligned_cols=176 Identities=20% Similarity=0.204 Sum_probs=138.6
Q ss_pred CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChh
Q 009477 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (534)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~ 277 (534)
...|++++|||+++..... . ...+............. +.......+...++..+......+.++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDPL--VRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCCe--EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3578999999998653221 0 11222221111111111 11223345566777777776667889999999999
Q ss_pred hHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC-----CCChhhhHH
Q 009477 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (534)
Q Consensus 278 ~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~-----p~s~~~~~q 352 (534)
.++.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhccCCCCCCcceEEEEeccccHHHHHHHH
Q 009477 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (534)
Q Consensus 353 r~GR~gR~g~~G~~i~~~~~~e~~~~~~l~ 382 (534)
|+||+||.| .|.+++|+++.+......++
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999985 79999999987766555544
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.2e-27 Score=262.41 Aligned_cols=174 Identities=19% Similarity=0.178 Sum_probs=137.3
Q ss_pred CCCcEEEEEeeCCHHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChh
Q 009477 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (534)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~ 277 (534)
..+|+++||||+++..... . ... +............. +.......+...++..+......+.++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~--~--~~~--~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH--T--DEM--VEQIIRPTGLLDPL--IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH--C--SSC--EEECCCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh--h--hCe--eeeeecccCCCCCe--EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 4678999999998653222 1 111 11111111111111 11223345566777777777777889999999999
Q ss_pred hHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC-----CCChhhhHH
Q 009477 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (534)
Q Consensus 278 ~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~-----p~s~~~~~q 352 (534)
.++.+++.|...|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred hhccCCCCCCcceEEEEeccccHHHHHH
Q 009477 353 RVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (534)
Q Consensus 353 r~GR~gR~g~~G~~i~~~~~~e~~~~~~ 380 (534)
|+||+||. ..|.+++|+++.+......
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999998 7899999999876554433
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.3e-27 Score=216.43 Aligned_cols=155 Identities=33% Similarity=0.509 Sum_probs=146.2
Q ss_pred cCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 009477 235 ISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (534)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~ 314 (534)
..+++.+.++.+....|...|..++... .++++||||+++.+++.+++.|...|+.+..+||++++.+|..+++.|++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3456899999999999999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccC
Q 009477 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (534)
Q Consensus 315 g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~ 391 (534)
|+.+|||+|+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.|..++..++..++.++..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876643
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=225.58 Aligned_cols=171 Identities=28% Similarity=0.436 Sum_probs=136.5
Q ss_pred HHhcCCCCeEEEeccccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceee
Q 009477 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (534)
Q Consensus 217 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l 296 (534)
.+.++.+|..+.+........++.+.++.+....|...|..++... ++++||||+++..++.+++.|...|+.+..+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4567888988888777777788999999999999999999988753 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc-cH
Q 009477 297 YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DM 375 (534)
Q Consensus 297 ~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~-e~ 375 (534)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|++|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 67
Q ss_pred HHHHHHHHHhCCCcc
Q 009477 376 AYLLDLHLFLSKPIR 390 (534)
Q Consensus 376 ~~~~~l~~~~~~~~~ 390 (534)
.++..++..++....
T Consensus 165 ~~~~~l~~~l~~~~~ 179 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 777777776654433
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=4.9e-27 Score=213.15 Aligned_cols=154 Identities=35% Similarity=0.580 Sum_probs=139.5
Q ss_pred CceEEEEEechhh-HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 009477 238 DLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (534)
Q Consensus 238 ~~~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~ 316 (534)
.+.+.|+.+...+ |...|..++... .++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5778888888777 999999999875 5689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCCC
Q 009477 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (534)
Q Consensus 317 ~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~p 393 (534)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++++++.+...+..++.+++..+...|
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776655
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=2.5e-26 Score=217.19 Aligned_cols=158 Identities=26% Similarity=0.403 Sum_probs=143.4
Q ss_pred ceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcE
Q 009477 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (534)
Q Consensus 239 ~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~ 318 (534)
+...++.+....|...|..++... .++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 455667778889999999999865 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCC--CChH
Q 009477 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSEE 396 (534)
Q Consensus 319 iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~--p~~~ 396 (534)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|++|.|++|+++.+...+..++..++..+... |..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877654 4444
Q ss_pred HH
Q 009477 397 EV 398 (534)
Q Consensus 397 ~~ 398 (534)
++
T Consensus 164 ei 165 (212)
T 3eaq_A 164 EV 165 (212)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=215.05 Aligned_cols=157 Identities=27% Similarity=0.512 Sum_probs=141.1
Q ss_pred cCCCceEEEEEechhh-HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHh
Q 009477 235 ISPDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313 (534)
Q Consensus 235 ~~~~~~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~ 313 (534)
....+.+.|+.++..+ |...|..++... .++++||||+++.+++.++..|...|+.+..+||++++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3457888999988765 999999888764 5689999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeCcccccCCCCCCCEEEEcCCC------CChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 009477 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (534)
Q Consensus 314 ~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p------~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~ 387 (534)
+|+.+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+++.+...+..++..++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999998888
Q ss_pred CccCCC
Q 009477 388 PIRAAP 393 (534)
Q Consensus 388 ~~~~~p 393 (534)
++...|
T Consensus 162 ~~~~~~ 167 (175)
T 2rb4_A 162 SIKQLN 167 (175)
T ss_dssp CCEEEC
T ss_pred cccccC
Confidence 766544
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=5.3e-27 Score=214.36 Aligned_cols=157 Identities=27% Similarity=0.431 Sum_probs=144.6
Q ss_pred CCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 009477 237 PDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (534)
Q Consensus 237 ~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~ 316 (534)
..+.+.|+.+....|...|..++... .++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46888999999999999999999865 5679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccc-cHHHHHHHHHHhCCCccCCCCh
Q 009477 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (534)
Q Consensus 317 ~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~-e~~~~~~l~~~~~~~~~~~p~~ 395 (534)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..++..++.++...|..
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999976 5677888888888887766643
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=7.7e-27 Score=215.83 Aligned_cols=160 Identities=31% Similarity=0.478 Sum_probs=130.6
Q ss_pred cccccCCCceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHH
Q 009477 231 VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (534)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~ 310 (534)
.+....+++.+.++.+....|...|..++... .+++++||||+++..++.+++.|...|+.+..+||++++.+|..+++
T Consensus 12 ~~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~ 90 (185)
T 2jgn_A 12 FQGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 90 (185)
T ss_dssp ----CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHH
T ss_pred ccCCCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHH
Confidence 34445678999999999999999999999874 35789999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCcc
Q 009477 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (534)
Q Consensus 311 ~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~ 390 (534)
.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...+..++..++....
T Consensus 91 ~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 170 (185)
T 2jgn_A 91 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 170 (185)
T ss_dssp HHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888777755443
Q ss_pred C
Q 009477 391 A 391 (534)
Q Consensus 391 ~ 391 (534)
.
T Consensus 171 ~ 171 (185)
T 2jgn_A 171 E 171 (185)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=8.1e-26 Score=223.97 Aligned_cols=160 Identities=27% Similarity=0.409 Sum_probs=143.1
Q ss_pred CceEEEEEechhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc
Q 009477 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317 (534)
Q Consensus 238 ~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~ 317 (534)
.+.+.++.+....|...|.+++... .++++||||+|+..++.+++.|...|+.+..+||++++.+|..+++.|++|+.
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 3577888899999999999999876 47899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccCC--CCh
Q 009477 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSE 395 (534)
Q Consensus 318 ~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~~--p~~ 395 (534)
+|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|++|.|+.|+++.+...+..++..++..+... |..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~ 159 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTP 159 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCH
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877644 444
Q ss_pred HHHH
Q 009477 396 EEVL 399 (534)
Q Consensus 396 ~~~~ 399 (534)
+++.
T Consensus 160 ~ei~ 163 (300)
T 3i32_A 160 EEVL 163 (300)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.1e-26 Score=212.05 Aligned_cols=152 Identities=34% Similarity=0.592 Sum_probs=138.6
Q ss_pred CceEEEEEech-hhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 009477 238 DLKLAFFTLRQ-EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (534)
Q Consensus 238 ~~~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~ 316 (534)
++.+.++.+.. ..|...|..++... .++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 45666777777 77888888888753 5679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceEEEEeccccHHHHHHHHHHhCCCccC
Q 009477 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (534)
Q Consensus 317 ~~iLI~Tdv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~i~~~~~~e~~~~~~l~~~~~~~~~~ 391 (534)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++.+.+...+..++.+++..+..
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 999999999999999999999999999999999999999999999999999999999988888888777765543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=205.57 Aligned_cols=168 Identities=21% Similarity=0.200 Sum_probs=124.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHH-HHHHHHHhh
Q 009477 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQ-TLKFTKELG 117 (534)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-~~~g~~~Lil~PtreLa~Q-~~~~~~~~~ 117 (534)
..+...|+|+|.++++.++.++++++.++||+|||++++.++.+.+.... ...+.++||++|+++|+.| +.+.++.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34556799999999999999999999999999999999999998775431 1235689999999999999 778888887
Q ss_pred ccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCC-----CCCCCeeEEEEcCCCccccCChHHHHH-H
Q 009477 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-----MSLKSVEYVVFDEADCLFGMGFAEQLH-K 191 (534)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-----~~l~~~~~iViDEah~l~~~~~~~~~~-~ 191 (534)
.. ++++..+.|+......+..+..+++|+|+||++|.+.+..... ..+.++++||+||||++.+.++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6888888887765555555556799999999999998875322 567889999999999998776555543 3
Q ss_pred HHHhc-------------CCCCcEEEEEee
Q 009477 192 ILGQL-------------SENRQTLLFSAT 208 (534)
Q Consensus 192 i~~~~-------------~~~~q~ll~SAT 208 (534)
++... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 22221 157899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=2.6e-23 Score=223.63 Aligned_cols=302 Identities=16% Similarity=0.217 Sum_probs=172.6
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 41 KGYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~----il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 578 699999998654 4578999999999999999999998764 468999999999999999877764
Q ss_pred hccCCCeEEEEEcCCCHH--------------------------------HHH---------------HHHhCCCCEEEE
Q 009477 117 GRYTDLRISLLVGGDSME--------------------------------SQF---------------EELAQNPDIIIA 149 (534)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~--------------------------------~~~---------------~~~~~~~~IiV~ 149 (534)
++++..+.|..... ..+ +.....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 35555544432100 000 111245799999
Q ss_pred CchHHHHHHHhcCCC-------CCCCeeEEEEcCCCccccCC-----------h---HH---------------------
Q 009477 150 TPGRLMHHLSEVEDM-------SLKSVEYVVFDEADCLFGMG-----------F---AE--------------------- 187 (534)
Q Consensus 150 Tp~~l~~~l~~~~~~-------~l~~~~~iViDEah~l~~~~-----------~---~~--------------------- 187 (534)
|++.|++.... +.+ .+....++||||||++.+.. + ..
T Consensus 151 n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 151 TYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp ETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999986543 111 24567899999999884210 0 00
Q ss_pred ------------------------------HHHHHHHh------------------------------------cCC---
Q 009477 188 ------------------------------QLHKILGQ------------------------------------LSE--- 198 (534)
Q Consensus 188 ------------------------------~~~~i~~~------------------------------------~~~--- 198 (534)
.+..++.. .|.
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 00001000 000
Q ss_pred ---------CCcEEEEEeeCCHHHHHHHHhcCCCCeE-EEeccccccCCCceEEEEE--ech--hh---HHHHHHHHHHH
Q 009477 199 ---------NRQTLLFSATLPSALAEFAKAGLRDPHL-VRLDVDTKISPDLKLAFFT--LRQ--EE---KHAALLYMIRE 261 (534)
Q Consensus 199 ---------~~q~ll~SAT~~~~~~~~~~~~l~~~~~-i~~~~~~~~~~~~~~~~~~--~~~--~~---k~~~L~~~l~~ 261 (534)
...+|++|||+++.+ .+. ..+ ..+. ... .....+.. ++. .. ....+...+.+
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~------~~~-~~f~~~~~--~~~--g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~ 378 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESL------TLT-NSYKIVVN--ESY--GRGEYYYCPNVTSELRKRNSNIPIYSILLKR 378 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTC------CCT-TEEEEECC--CC---CCCEEEECTTCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCc------ccc-hhcCCchh--hee--cCCcceeccccCCCcccccCHHHHHHHHHHH
Confidence 112488888887720 000 011 1110 000 01111110 110 11 11344444444
Q ss_pred hc-CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEE--EeCcccccCCCCC----
Q 009477 262 HI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI--VTDVAARGIDIPL---- 334 (534)
Q Consensus 262 ~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI--~Tdv~a~GlDip~---- 334 (534)
.. ..++.+|||++|...++.+++.+.. . ...++|.. ..|..+++.|+++. .||+ +|+.+++|||+|+
T Consensus 379 ~~~~~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 379 IYENSSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHTCSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 32 2467999999999999999988754 2 34555553 46888999999865 6777 8899999999997
Q ss_pred CCEEEEcCCCCChh------------------------------hhHHhhccCCCCCCcceEEEEeccc
Q 009477 335 LDNVINWDFPPKPK------------------------------IFVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 335 v~~VI~~~~p~s~~------------------------------~~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
+++||++++|.... .+.|.+||+-|...+--++.+++..
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 88999999995322 1379999999975543344455443
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=201.87 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=134.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 009477 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (534)
Q Consensus 32 ~~l~~~l~~~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~ 111 (534)
+.+.+.....+...++++|.++++.+..|+++++.|+||||||+++.+++++.+.......+.++++++|+++|+.|+.+
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~ 127 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAE 127 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHH
Confidence 33333344444556899999999999999999999999999999999999887665433335589999999999999988
Q ss_pred HHHH-hhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcc-ccCChH-HH
Q 009477 112 FTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFA-EQ 188 (534)
Q Consensus 112 ~~~~-~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l-~~~~~~-~~ 188 (534)
.+.. ++...+..++.-....... ...+++|+|+|||+|.+++.. .++++++||+||||++ .+++|. ..
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 128 RVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHH
Confidence 7655 3334455554433222110 014578999999999999875 4889999999999986 677776 45
Q ss_pred HHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhcCCCC
Q 009477 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224 (534)
Q Consensus 189 ~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~ 224 (534)
+..++... ++.|+++||||++.+. +.+.+...|
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 56666555 4789999999999875 555554444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=8.5e-22 Score=212.47 Aligned_cols=313 Identities=18% Similarity=0.146 Sum_probs=204.1
Q ss_pred CCCCCcHHHHHHHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 42 GYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~----il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
|| +++|.|.+.+.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 45 599999997764 4578999999999999999999999972 5689999999999999999999888
Q ss_pred ccCCCeEEEEEcCCCH---------------------------------HHHH------------------HHHhCCCCE
Q 009477 118 RYTDLRISLLVGGDSM---------------------------------ESQF------------------EELAQNPDI 146 (534)
Q Consensus 118 ~~~~l~~~~~~gg~~~---------------------------------~~~~------------------~~~~~~~~I 146 (534)
+..++++..+.|+.++ .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888888774332 1111 223457899
Q ss_pred EEECchHHHHHHHhcCCCCC-CCeeEEEEcCCCccccCC-----------------------------------------
Q 009477 147 IIATPGRLMHHLSEVEDMSL-KSVEYVVFDEADCLFGMG----------------------------------------- 184 (534)
Q Consensus 147 iV~Tp~~l~~~l~~~~~~~l-~~~~~iViDEah~l~~~~----------------------------------------- 184 (534)
||+|++.|++...+. .+.+ ....++||||||++.+ .
T Consensus 152 VV~~~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 152 IALTYPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEETHHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEeCchHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999886542 2333 4678999999998764 1
Q ss_pred --------------hHHHHH----------------------------HHHH----------------------------
Q 009477 185 --------------FAEQLH----------------------------KILG---------------------------- 194 (534)
Q Consensus 185 --------------~~~~~~----------------------------~i~~---------------------------- 194 (534)
+...+. ..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 000000 0000
Q ss_pred hcCCC-CcEEEEEeeCCHHHHHHHHhcCCCCeEE----EeccccccCCCceEEEEE--ech------hhHHHHHHHHHHH
Q 009477 195 QLSEN-RQTLLFSATLPSALAEFAKAGLRDPHLV----RLDVDTKISPDLKLAFFT--LRQ------EEKHAALLYMIRE 261 (534)
Q Consensus 195 ~~~~~-~q~ll~SAT~~~~~~~~~~~~l~~~~~i----~~~~~~~~~~~~~~~~~~--~~~------~~k~~~L~~~l~~ 261 (534)
.+... +.+|++|||+++ ...+.+...-++... .+...... ..-...++. ++. ..-...+.+.+.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 01223 689999999987 444555433231221 12222222 222222222 111 1123445555544
Q ss_pred hcC-CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe--CcccccCCCC-----
Q 009477 262 HIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT--DVAARGIDIP----- 333 (534)
Q Consensus 262 ~~~-~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T--dv~a~GlDip----- 333 (534)
... .++.++||++|....+.+++. .+..+..-..+++ +...++.|+.+...||+|| ...++|||+|
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 322 467999999999999999872 3433333223444 3456778864445899998 6999999999
Q ss_pred CCCEEEEcCCCCChh------------------h------------hHHhhccCCCCCCcceEEEEeccc
Q 009477 334 LLDNVINWDFPPKPK------------------I------------FVHRVGRAARAGRTGTAFSFVTSE 373 (534)
Q Consensus 334 ~v~~VI~~~~p~s~~------------------~------------~~qr~GR~gR~g~~G~~i~~~~~~ 373 (534)
.++.||...+|.... . +.|.+||+-|...+--++.+++..
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 377899888774211 1 268899999986654455555543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.3e-22 Score=198.61 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=127.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeE
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (534)
+|+|+|.++++.++.+++.++.++||+|||.+++.++...+... +.++||++||++|+.|+.+.+++++...+..+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----CCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 79999999999999888899999999999999998887766532 34799999999999999999999987777788
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
..+.+|..... ......+|+|+||+++.... ...+.++++||+||||++.+ ..+..++..+....++++
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEE
Confidence 88888765432 22256899999999886432 23467899999999999874 477788888878899999
Q ss_pred EEeeCCHHH
Q 009477 205 FSATLPSAL 213 (534)
Q Consensus 205 ~SAT~~~~~ 213 (534)
+|||+++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999998653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=3.2e-19 Score=171.29 Aligned_cols=138 Identities=19% Similarity=0.144 Sum_probs=111.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCe-
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~- 123 (534)
.|+++|.++++.++.+++++++++||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 6999999999999999999999999999999998776642 456999999999999999888774 577
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEE
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~l 203 (534)
+..+.|+.. ...+|+|+||+.+....... ..++++||+||||++.+..+. .++..++ ..+++
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRL 222 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEE
Confidence 777777654 36799999999998776532 246899999999999887654 3444444 67899
Q ss_pred EEEeeCCHH
Q 009477 204 LFSATLPSA 212 (534)
Q Consensus 204 l~SAT~~~~ 212 (534)
++|||+++.
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999998754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=7.8e-19 Score=191.02 Aligned_cols=317 Identities=17% Similarity=0.194 Sum_probs=193.5
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 009477 45 VPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (534)
Q Consensus 45 ~~~~~Q~~ai~----~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (534)
+|+|.|++.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 58999998885 445799999999999999999999999987653 5689999999999999999999888766
Q ss_pred CCeEEEEEcCCCHHH------------------HH---------------------------------------------
Q 009477 121 DLRISLLVGGDSMES------------------QF--------------------------------------------- 137 (534)
Q Consensus 121 ~l~~~~~~gg~~~~~------------------~~--------------------------------------------- 137 (534)
++++..+.|+.++.- ..
T Consensus 79 ~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~ 158 (620)
T 4a15_A 79 KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYG 158 (620)
T ss_dssp CCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHH
T ss_pred CeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHh
Confidence 788777766432111 00
Q ss_pred -----------HHHhCCCCEEEECchHHHHHHHhcC---CC-CCCCeeEEEEcCCCccccC-------------------
Q 009477 138 -----------EELAQNPDIIIATPGRLMHHLSEVE---DM-SLKSVEYVVFDEADCLFGM------------------- 183 (534)
Q Consensus 138 -----------~~~~~~~~IiV~Tp~~l~~~l~~~~---~~-~l~~~~~iViDEah~l~~~------------------- 183 (534)
+.....+||||+.+.-|++...+.. .+ ....-.++||||||++.+.
T Consensus 159 ~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~ 238 (620)
T 4a15_A 159 ERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADR 238 (620)
T ss_dssp HHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHH
T ss_pred hhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHH
Confidence 1112247899999988776543211 01 1234569999999986310
Q ss_pred -------Ch----------HHH----HH-----------------------------------H-------HHH------
Q 009477 184 -------GF----------AEQ----LH-----------------------------------K-------ILG------ 194 (534)
Q Consensus 184 -------~~----------~~~----~~-----------------------------------~-------i~~------ 194 (534)
.+ ... +. . +..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 318 (620)
T 4a15_A 239 EAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEK 318 (620)
T ss_dssp HHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 000 00 0 000
Q ss_pred --h--------------------cC------------------------------CCCcEEEEEeeCCHHHHHHHHhcCC
Q 009477 195 --Q--------------------LS------------------------------ENRQTLLFSATLPSALAEFAKAGLR 222 (534)
Q Consensus 195 --~--------------------~~------------------------------~~~q~ll~SAT~~~~~~~~~~~~l~ 222 (534)
. .. ....+|++|||+.+ ...+.+...-
T Consensus 319 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lGl 397 (620)
T 4a15_A 319 EKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITGF 397 (620)
T ss_dssp HHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHCC
T ss_pred cccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhCC
Confidence 0 00 01245899999986 4445443322
Q ss_pred CCeEEEeccccccCCCceEEEEEe--c------hhhHHHHHHHHHHHhc-CCCCeEEEEEcChhhHHHHHHHHHHcCCCc
Q 009477 223 DPHLVRLDVDTKISPDLKLAFFTL--R------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEP 293 (534)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~--~------~~~k~~~L~~~l~~~~-~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~ 293 (534)
++....++ ......-...++.. + ...-...+...+.+.. ..++.++||++|....+.+++.+. ....
T Consensus 398 ~~~~~~~~--spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~ 473 (620)
T 4a15_A 398 EIPFKKIG--EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHM 473 (620)
T ss_dssp CCCEEECC--CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCE
T ss_pred CceeeecC--CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcch
Confidence 23333332 22222112222211 1 1111233333333322 136789999999999999988876 2222
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCcEEEEEeC--cccccCCCCC--CCEEEEcCCCCChh---------------------
Q 009477 294 SVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNVINWDFPPKPK--------------------- 348 (534)
Q Consensus 294 ~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td--v~a~GlDip~--v~~VI~~~~p~s~~--------------------- 348 (534)
. ...+++...+...+++|+ ++..||++|. ..++|||+|+ ++.||...+|....
T Consensus 474 ~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~ 551 (620)
T 4a15_A 474 K-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEY 551 (620)
T ss_dssp E-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHH
T ss_pred h-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchH
Confidence 2 334455668899999999 8889999985 8999999996 67899998885321
Q ss_pred --------hhHHhhccCCCCCCcceEEEEecc
Q 009477 349 --------IFVHRVGRAARAGRTGTAFSFVTS 372 (534)
Q Consensus 349 --------~~~qr~GR~gR~g~~G~~i~~~~~ 372 (534)
...|.+||+-|...+--++.+++.
T Consensus 552 ~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 552 SVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred HhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 127999999997665444555544
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.2e-18 Score=170.35 Aligned_cols=129 Identities=18% Similarity=0.316 Sum_probs=104.0
Q ss_pred chhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcC-CcE-EEEEe
Q 009477 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIVT 323 (534)
Q Consensus 247 ~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~-iLI~T 323 (534)
....|...|..++.+....+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ +.+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567899999999887778899999999999999999999885 99999999999999999999999999 677 78999
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhhhHHhhccCCCCCCcceE--EEEeccccH
Q 009477 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (534)
Q Consensus 324 dv~a~GlDip~v~~VI~~~~p~s~~~~~qr~GR~gR~g~~G~~--i~~~~~~e~ 375 (534)
+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+ +.+++.+..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999999999999999999999999987654 667776543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.95 E-value=2.7e-09 Score=115.87 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCChHH--HHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeE
Q 009477 47 TPIQRKTMPLILSGADVVAMARTGSGKT--AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (534)
Q Consensus 47 ~~~Q~~ai~~il~~~d~i~~a~TGsGKT--~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (534)
++.|+.|++.++.++.+++.|++||||| .+++++.+..+.. ..+.++++++||..++.++.+.+...+...++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 7899999999999999999999999999 6677777765532 2466899999999999999887776554443321
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
.... +.. .... .-..++-.+|+... +...... ...++++|+|||+. .+ ...+..++..++...|+++
T Consensus 228 ~~~~-~~~--~~~~---Tih~ll~~~~~~~~--~~~~~~~-~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 228 EQKK-RIP--EDAS---TLHRLLGAQPGSQR--LRHHAGN-PLHLDVLVVDEASM-ID---LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CCCC-SCS--CCCB---TTTSCC-------------CTTS-CCSCSEEEECSGGG-CB---HHHHHHHHHTCCTTCEEEE
T ss_pred HHHh-ccc--hhhh---hhHhhhccCCCchH--HHhccCC-CCCCCEEEEechhh-CC---HHHHHHHHHhCCCCCEEEE
Confidence 1000 000 0000 00011112222110 1111112 22789999999994 44 4567888889998899888
Q ss_pred EEee
Q 009477 205 FSAT 208 (534)
Q Consensus 205 ~SAT 208 (534)
+.=.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 7644
No 95
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.1e-05 Score=85.31 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
+..+++.|.+|+..++.+.-+++.||+|||||.+..-. +..+... .+.++|+++||...+.++.+.+...+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 45689999999999988777999999999999875433 3333322 25679999999999999998887653
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.37 E-value=2.7e-05 Score=85.17 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 009477 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d-~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (534)
.+++-|++|+..++..++ .++.||+|||||.+..-.+.+.+. .|.++|+++||..-+.++.+.+...+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-----~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-----QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 589999999999887665 789999999999876544444333 36789999999999999888776543
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.32 E-value=4.2e-05 Score=83.65 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc--CC
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY--TD 121 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~--~~ 121 (534)
..+++.|++++.. .+..+++.|+.|||||.+.+--+...+..... ...++|++++|+..+.++.+.+...... .+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~ 84 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-SPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGG 84 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CGGGEEEEESSHHHHHHHHHHHHHHHCSCCTT
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-ChhhEEEEeccHHHHHHHHHHHHHHhccccCC
Confidence 4689999999973 35679999999999999866555554443221 2357999999999999999988776322 33
Q ss_pred CeEEEE
Q 009477 122 LRISLL 127 (534)
Q Consensus 122 l~~~~~ 127 (534)
+.+..+
T Consensus 85 ~~v~Tf 90 (647)
T 3lfu_A 85 MWVGTF 90 (647)
T ss_dssp CEEEEH
T ss_pred cEEEcH
Confidence 444444
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.20 E-value=1.2e-05 Score=87.53 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
+..+++.|.+|+..++.+.-+++.||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS---SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999988887899999999999987543 33344332 3568999999999999988877654
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.15 E-value=7.3e-06 Score=88.00 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeE
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (534)
.+++.|++++..++.++.+++.|+.|||||.+.. .++..+.. .|.++++++||...+..+.+.+. ...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~~~-------~~a 256 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES----LGLEVGLCAPTGKAARRLGEVTG-------RTA 256 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH----TTCCEEEEESSHHHHHHHHHHHT-------SCE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh----cCCeEEEecCcHHHHHHhHhhhc-------ccH
Confidence 4899999999999999999999999999997633 33444433 36789999999988877655321 111
Q ss_pred EEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 125 ~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
..++ .. +... |+.+ .. ........++||+||++.+. ...+..++..++...++++
T Consensus 257 ~Tih------~l---l~~~-------~~~~----~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 257 STVH------RL---LGYG-------PQGF----RH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp EEHH------HH---TTEE-------TTEE----SC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEE
T ss_pred HHHH------HH---HcCC-------cchh----hh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEE
Confidence 1110 00 0000 0000 00 11223367899999999764 3456677777877777666
Q ss_pred EE
Q 009477 205 FS 206 (534)
Q Consensus 205 ~S 206 (534)
+.
T Consensus 312 vG 313 (574)
T 3e1s_A 312 VG 313 (574)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.14 E-value=9.8e-06 Score=84.89 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=79.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcC----C-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 009477 37 AIKRKGYKVPTPIQRKTMPLILSG----A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (534)
Q Consensus 37 ~l~~~g~~~~~~~Q~~ai~~il~~----~-d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~ 111 (534)
...-+.|..|++.|++++..++.. + .+++.|+.|||||.+. ..++..+... ...++++++||...+..+.+
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHh
Confidence 345568999999999999876542 3 7999999999999764 3444444442 12369999999888776554
Q ss_pred HHHHhhccCCCeEEEEEcCCCHHHHHHHH---hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHH
Q 009477 112 FTKELGRYTDLRISLLVGGDSMESQFEEL---AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (534)
Q Consensus 112 ~~~~~~~~~~l~~~~~~gg~~~~~~~~~~---~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~ 188 (534)
.+ +..+..++ ...... ......... .....+...++||+||++.+. ...
T Consensus 93 ~~-------~~~~~T~h------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~iiiDE~~~~~----~~~ 144 (459)
T 3upu_A 93 LS-------GKEASTIH------SILKINPVTYEENVLFEQ-----------KEVPDLAKCRVLICDEVSMYD----RKL 144 (459)
T ss_dssp HH-------SSCEEEHH------HHHTEEEEECSSCEEEEE-----------CSCCCCSSCSEEEESCGGGCC----HHH
T ss_pred hh-------ccchhhHH------HHhccCcccccccchhcc-----------cccccccCCCEEEEECchhCC----HHH
Confidence 43 12221111 000000 000000000 012345678999999999754 345
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 009477 189 LHKILGQLSENRQTLLFS 206 (534)
Q Consensus 189 ~~~i~~~~~~~~q~ll~S 206 (534)
+..++..++...+++++.
T Consensus 145 ~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 145 FKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHhccCCCEEEEEC
Confidence 555666666555554443
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=2.6e-05 Score=86.82 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 43 ~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
...+++.|.+|+..++.+.-+++.|++|+|||.+.. .++..+... .+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 446899999999999888889999999999998754 334444432 3568999999999999988877654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.67 E-value=0.00042 Score=67.87 Aligned_cols=125 Identities=12% Similarity=0.068 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccc
Q 009477 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (534)
Q Consensus 248 ~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a 327 (534)
...|+..|-+++......+.+++||+......+.+..+|...++....+.|.....+++ -.+....+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 45688888888888878899999999999999999999999999999999985543221 1245666666676666
Q ss_pred ccCC-----CCCCCEEEEcCCCCChhhh-HHhhccCCCCC----CcceEEEEeccccHHH
Q 009477 328 RGID-----IPLLDNVINWDFPPKPKIF-VHRVGRAARAG----RTGTAFSFVTSEDMAY 377 (534)
Q Consensus 328 ~GlD-----ip~v~~VI~~~~p~s~~~~-~qr~GR~gR~g----~~G~~i~~~~~~e~~~ 377 (534)
-|+| +...+.||.||.-+++..= +|.+-|+.|.| ++-.+|-+++.+-.+.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6676 5678999999999999884 89888888873 3567888998876554
No 103
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.58 E-value=0.0044 Score=68.43 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc-c-CC
Q 009477 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-Y-TD 121 (534)
Q Consensus 44 ~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~-~-~~ 121 (534)
..++|.|++|+.. ....+++.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+..+.. . .+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~ 86 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-APWNILAITFTNKAAREMRERVQSLLGGAAED 86 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-CGGGEEEEESSHHHHHHHHHHHHHHHGGGGTT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHhcccccC
Confidence 4699999999975 35679999999999999866555555443211 235699999999999999887776532 1 24
Q ss_pred CeEEEEEc
Q 009477 122 LRISLLVG 129 (534)
Q Consensus 122 l~~~~~~g 129 (534)
+.+..+++
T Consensus 87 ~~v~Tfhs 94 (724)
T 1pjr_A 87 VWISTFHS 94 (724)
T ss_dssp SEEEEHHH
T ss_pred cEEeeHHH
Confidence 55555443
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.26 E-value=0.0015 Score=66.11 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (534)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+... .|..++++.||++-|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS---SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 58999999998765556789999999999998776666544432 467899999999999888877776544
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.01 E-value=0.0062 Score=65.58 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC--C
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--L 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~--l 122 (534)
.|+|+|+..+..+...+.+++.++-|+|||.+....++..+... .+.+++++.|+++.|..+.+.++.+..... +
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 48999999998775567799999999999998766555555443 366899999999999998887777655432 1
Q ss_pred eEEEE-EcCCCHHHHHHHHhCCCCEEEEC--chHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCC-
Q 009477 123 RISLL-VGGDSMESQFEELAQNPDIIIAT--PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (534)
Q Consensus 123 ~~~~~-~gg~~~~~~~~~~~~~~~IiV~T--p~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~- 198 (534)
..... ...... .+.++..|.+.+ |+.+. . . +.+++|+||+|..-+ ..+.+..+...+..
T Consensus 240 ~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lr----G---~---~~~~~iiDE~~~~~~--~~~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 240 QPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVR----G---N---SFAMIYIEDCAFIPN--FHDSWLAIQPVISSG 302 (592)
T ss_dssp SCCEEEECSSEE-----EETTSCEEEEEECCHHHHH----H---S---CCSEEEEETGGGCTT--HHHHHHHHHHHHSSS
T ss_pred ccccccCCccEE-----EecCCCEEEEEeCCCCCcc----C---C---CcceEEEehhccCCc--hhHHHHHHHHHhccC
Confidence 11111 011100 012344444433 33222 1 1 367899999998654 22333333333332
Q ss_pred -CCcEEEEEeeCCH
Q 009477 199 -NRQTLLFSATLPS 211 (534)
Q Consensus 199 -~~q~ll~SAT~~~ 211 (534)
+.+ +++..|+..
T Consensus 303 ~~~~-ii~isTP~~ 315 (592)
T 3cpe_A 303 RRSK-IIITTTPNG 315 (592)
T ss_dssp SCCE-EEEEECCCT
T ss_pred CCce-EEEEeCCCC
Confidence 344 444446543
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.83 E-value=0.0066 Score=54.30 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEcCCCChHHHHHH
Q 009477 47 TPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 47 ~~~Q~~ai~~il---------~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.|.+++..+. .|+.+++.||+|+|||....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665443 36789999999999998543
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.73 E-value=0.0022 Score=65.77 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=62.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhC
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~ 142 (534)
.++.|+.|+|||.... .+... .+.+|++||++++..+.+.+...+.. .
T Consensus 164 ~~I~G~aGsGKTt~I~-----~~~~~-----~~~lVlTpT~~aa~~l~~kl~~~~~~----------------------~ 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-----SRVNF-----EEDLILVPGRQAAEMIRRRANASGII----------------------V 211 (446)
T ss_dssp EEEEECTTSCHHHHHH-----HHCCT-----TTCEEEESCHHHHHHHHHHHTTTSCC----------------------C
T ss_pred EEEEcCCCCCHHHHHH-----HHhcc-----CCeEEEeCCHHHHHHHHHHhhhcCcc----------------------c
Confidence 7899999999999654 22221 24799999999998877766432100 1
Q ss_pred CCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 143 ~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
....-|.|-++++-. ......-..+++|||||-. .+.+. +..++...+. .+++++.=+
T Consensus 212 ~~~~~V~T~dsfL~~---~~~~~~~~~d~liiDE~sm-~~~~~---l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLMN---YGKGARCQFKRLFIDEGLM-LHTGC---VNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHHT---TTSSCCCCCSEEEEETGGG-SCHHH---HHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhcC---CCCCCCCcCCEEEEeCccc-CCHHH---HHHHHHhCCC-CEEEEecCc
Confidence 122346776665421 1112222478999999974 44333 3333444433 455554433
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.0006 Score=61.79 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
.|+-.++.|++|+|||+..+--+.. +.. .|.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~-~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI-YKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH-HHH----TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH-HHH----CCCeEEEEeecc
Confidence 3556789999999999976533332 222 356799999974
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.43 E-value=0.0013 Score=57.35 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.++.+++.|++|+|||...-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67889999999999998543
No 110
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.40 E-value=0.0041 Score=68.18 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc---CC
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY---TD 121 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~---~~ 121 (534)
.++|.|++++.. .+..+++.|..|||||.+..--+...+..... ...++|+|+.|+..+.++.+.+...... .+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~ 78 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHcCcccccC
Confidence 489999999975 35679999999999999866555555544221 2356999999999999999988775432 24
Q ss_pred CeEEEEEc
Q 009477 122 LRISLLVG 129 (534)
Q Consensus 122 l~~~~~~g 129 (534)
+.+..+++
T Consensus 79 ~~v~Tfhs 86 (673)
T 1uaa_A 79 LMISTFHT 86 (673)
T ss_dssp SEEEEHHH
T ss_pred CEEEeHHH
Confidence 55655543
No 111
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.36 E-value=0.0096 Score=61.14 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=73.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
-+++.|++|+|||+.....+. .+.. .|.+++++. +.|.-+. +.+..++...++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~----~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~-------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK----RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQ-------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCS--------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccC--------
Confidence 377889999999987553332 2222 355676665 3343332 234445444455433222111
Q ss_pred HhCCCCEEEECchHHH-HHHHhcCCCCCCCeeEEEEcCCCccc---cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHH
Q 009477 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLF---GMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~-~~l~~~~~~~l~~~~~iViDEah~l~---~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (534)
.|..+. ..+.. +...++++||+|++-++. +..+...+..+.....+..-++.++|+...+...
T Consensus 163 ----------dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 163 ----------NPIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp ----------CHHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred ----------CHHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 122222 22222 334578999999998754 3446677777777776666678888886555444
Q ss_pred HHHh
Q 009477 216 FAKA 219 (534)
Q Consensus 216 ~~~~ 219 (534)
.++.
T Consensus 230 ~a~~ 233 (433)
T 3kl4_A 230 LASR 233 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.0038 Score=58.19 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
|.-.++.|++|+|||++.+-.+. ++.. .|.+++++.|...= . . ...+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~-r~~~----~g~kVli~~~~~d~--r-~--~~~i~srlG~~---------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH-RLEY----ADVKYLVFKPKIDT--R-S--IRNIQSRTGTS---------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCCG--G-G--CSSCCCCCCCS----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHH-HHHh----cCCEEEEEEeccCc--h-H--HHHHHHhcCCC----------------
Confidence 45588899999999987654333 3332 36679999876420 0 0 00111111211
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
-..+-+.+...++..+.. ...-..+++||+||++.+.
T Consensus 66 ---~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ---LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ---SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSC
T ss_pred ---ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCc
Confidence 012345566667766653 2333468999999999754
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.16 E-value=0.0026 Score=57.82 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
|+-.++.|++|||||++.+-.+. +... .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~-r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIR-RAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-HHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHHH----CCCEEEEEEecc
Confidence 45578899999999987663333 3322 467899999973
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.94 E-value=0.0029 Score=58.33 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptre 104 (534)
|+-.++.|+.|||||++.+--+... .. .|.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QF----AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HH----TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH----CCCEEEEEEeccC
Confidence 3446789999999998766444333 22 4678999999753
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.93 E-value=0.03 Score=55.11 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
+..+++.|++|+|||...- .+...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~----~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR----GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT----TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC----CCEEEEEEH
Confidence 3579999999999998643 223333222 344666654
No 116
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.86 E-value=0.012 Score=68.76 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
.+|+.|+++|.. .++++++.|..|||||.+.+--++..+.... .-...++|++++|+..+..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 489999999975 3789999999999999987766666665532 11235799999999999999987766
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.09 Score=51.59 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhh
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQ 87 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~ 87 (534)
+.++++.|++|+|||.+.- .++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4679999999999998654 33444443
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.61 E-value=0.033 Score=50.56 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.|++|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 119
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.61 E-value=0.037 Score=47.48 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l 78 (534)
..+.++++.|++|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 356789999999999998654
No 120
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.54 E-value=0.065 Score=51.20 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.|++|+|||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998654
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.51 E-value=0.031 Score=55.39 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEcCCCChHHHHHHHH
Q 009477 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVP 80 (534)
Q Consensus 46 ~~~~Q~~ai~~il----~~~---d~i~~a~TGsGKT~~~l~p 80 (534)
+.|+|.+++..+. +|+ ..++.|+.|+|||......
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 4688888876554 343 3899999999999876533
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.49 E-value=0.032 Score=57.32 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=70.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
-+++.|++|+|||+...-.+. .+.. .|.+++++. |.|.-+. +.++.++...++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~----~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~-------- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQK----RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEK-------- 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHT----TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCC--------
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHH----CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCC--------
Confidence 377899999999997653332 2322 366677666 4444332 345555555566543322221
Q ss_pred HhCCCCEEEECchHHH-HHHHhcCCCCCCCeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHH
Q 009477 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~-~~l~~~~~~~l~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (534)
.|..+. +.+.. +.-..+++||+|.+=++... .....+..+.....+..-++.++||........+
T Consensus 166 ----------dp~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 166 ----------DAIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp ----------CHHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred ----------CHHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 122221 22221 11235789999998654422 2445556665555555667888888765554444
Q ss_pred Hh
Q 009477 218 KA 219 (534)
Q Consensus 218 ~~ 219 (534)
+.
T Consensus 233 ~~ 234 (443)
T 3dm5_A 233 LA 234 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.42 E-value=0.058 Score=55.65 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=25.2
Q ss_pred CeeEEEEcCCCccccC-ChHHHHHHHHHhcC-CCCcEEEEEee
Q 009477 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSAT 208 (534)
Q Consensus 168 ~~~~iViDEah~l~~~-~~~~~~~~i~~~~~-~~~q~ll~SAT 208 (534)
+.+++++||+|.+... .....+..++..+. .+.++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4679999999998864 23445555555433 34555554443
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.36 E-value=0.041 Score=60.88 Aligned_cols=81 Identities=16% Similarity=0.056 Sum_probs=67.9
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-cccccCCCCCCCE
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-VAARGIDIPLLDN 337 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-v~a~GlDip~v~~ 337 (534)
+..+.+++|.++|+.-++.+++.+... ++.+..+||+++..++...++...+|+.+|+|+|. .+...+++.++++
T Consensus 414 l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 414 YEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp HHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 345789999999999888877776643 78999999999999999999999999999999995 4456788889999
Q ss_pred EEEcCC
Q 009477 338 VINWDF 343 (534)
Q Consensus 338 VI~~~~ 343 (534)
||.-..
T Consensus 494 VVIDEa 499 (780)
T 1gm5_A 494 VIIDEQ 499 (780)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 885443
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.24 E-value=0.091 Score=51.53 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=26.5
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
...+++++||+|.+........+..++...+.+.++++.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999872234555666666655556555533
No 126
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.19 E-value=0.019 Score=53.40 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
|+-.+..|+.|||||++.+--+.... ..|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-----~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-----IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-----TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeecC
Confidence 55578899999999987664433332 2477899998864
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.18 E-value=0.037 Score=55.49 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=19.7
Q ss_pred CeeEEEEcCCCccccCC-hHHHHHHHHHhc
Q 009477 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQL 196 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~-~~~~~~~i~~~~ 196 (534)
...+||+||+|.+.... ....+..+++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 46699999999987652 345555555544
No 128
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.10 E-value=0.03 Score=60.33 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 45 VPTPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 45 ~~~~~Q~~ai~~il~--~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
.+|..|++++..++. ..-.++.|.-|.|||++..+.+-. +.. +++|.+|+.+=+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-------~~~vtAP~~~a~~~l~~----~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-------RAIVTAPAKASTDVLAQ----FAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-------CEEEECSSCCSCHHHHH----HHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-------CcEEECCCHHHHHHHHH----HhhC---
Confidence 689999999998876 334789999999999766544433 221 26999999876554333 2211
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcE
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 202 (534)
.|-+..|..+.. .....+++|||||=.+- ...+..++. ....
T Consensus 240 ----------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSE
T ss_pred ----------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCe
Confidence 133446665431 13358899999996543 344455544 3346
Q ss_pred EEEEeeC
Q 009477 203 LLFSATL 209 (534)
Q Consensus 203 ll~SAT~ 209 (534)
++||.|.
T Consensus 282 v~~~tTv 288 (671)
T 2zpa_A 282 TLLTTTV 288 (671)
T ss_dssp EEEEEEB
T ss_pred EEEEecC
Confidence 8888887
No 129
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.02 E-value=0.022 Score=51.52 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
++-.++.|++|||||+-.+-.+-.... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~-----~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI-----AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-----TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEccc
Confidence 556889999999999754433333222 35779999887
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.81 E-value=0.2 Score=45.36 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEe
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SA 207 (534)
....+||+||+|.+... ....+..++...+.+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 46789999999997643 34556666666555555554443
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.79 E-value=0.21 Score=43.89 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|++|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999998644
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.67 E-value=0.1 Score=44.62 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~ 77 (534)
...+.++++.|++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999854
No 133
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.66 E-value=0.92 Score=39.68 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
.+.+++.|++|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999998643
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.52 E-value=0.11 Score=49.74 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--hcCCcEEEEcCCCChHHHHHH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPLI--LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q-~~ai~~i--l~~~d~i~~a~TGsGKT~~~l 78 (534)
....-+|++++-.+...+.|.+.=. .+.+ .+.+..+ ...+.+++.|++|+|||...-
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3456689999877777777754210 1111 1122221 235679999999999998543
No 135
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.43 E-value=0.022 Score=55.94 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
++++++.|++|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998654
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.41 E-value=0.049 Score=54.76 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|++|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998643
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.41 E-value=0.13 Score=46.54 Aligned_cols=133 Identities=13% Similarity=0.196 Sum_probs=75.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc------CcHHHHHHHHHHHHHhhccCCCeEEEEEcCC---
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS------PTRDLALQTLKFTKELGRYTDLRISLLVGGD--- 131 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~------PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~--- 131 (534)
-.+++...+|.|||.+++-.++..+. .|.+|+|+- .+-|. +.++.+ ++.+...-.|-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-----~G~rV~~vQF~Kg~~~~gE~-----~~l~~L----~v~~~~~g~gf~~~ 94 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-----HGKNVGVVQFIKGTWPNGER-----NLLEPH----GVEFQVMATGFTWE 94 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-----TTCCEEEEESSCCSSCCHHH-----HHHGGG----TCEEEECCTTCCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEeeCCCCCccHH-----HHHHhC----CcEEEEcccccccC
Confidence 46999999999999998877776554 377888883 22121 122233 12221111110
Q ss_pred CHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCC--hHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 132 ~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~--~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
......... ..-.. +....+ .+.-..+++||+||.--....+ -.+.+.+++...|...-+|+.+--+
T Consensus 95 ~~~~~~~~~--------~a~~~-l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 95 TQNREADTA--------ACMAV-WQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp GGGHHHHHH--------HHHHH-HHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CCCcHHHHH--------HHHHH-HHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 000000000 00111 222221 1333679999999996544433 2466777888888888888888888
Q ss_pred CHHHHHHHH
Q 009477 210 PSALAEFAK 218 (534)
Q Consensus 210 ~~~~~~~~~ 218 (534)
|+++.+.+.
T Consensus 164 p~~l~e~AD 172 (196)
T 1g5t_A 164 HRDILDLAD 172 (196)
T ss_dssp CHHHHHHCS
T ss_pred cHHHHHhCc
Confidence 888877664
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.40 E-value=0.1 Score=50.65 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.|++|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998654
No 139
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.24 E-value=0.021 Score=52.52 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (534)
|.-.++.|+.|||||+..+--+ .+... .|.+++|+.|...--. -........++..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~----~g~kvli~kp~~D~R~----~~~~I~Sr~G~~~--------------- 83 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY----AKQKVVVFKPAIDDRY----HKEKVVSHNGNAI--------------- 83 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH----TTCCEEEEEEC---------------CBTTBCC---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH----cCCceEEEEeccCCcc----hhhhHHHhcCCce---------------
Confidence 4557899999999998655333 33333 3567999999653110 0111222222211
Q ss_pred HhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHH
Q 009477 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (534)
Q Consensus 140 ~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~ 193 (534)
..+.|..+..++.. + ..++++|+||||+-+.+ ...+.+..+.
T Consensus 84 ----~a~~v~~~~di~~~------i-~~~~dvV~IDEaQFf~~-~~v~~l~~la 125 (219)
T 3e2i_A 84 ----EAINISKASEIMTH------D-LTNVDVIGIDEVQFFDD-EIVSIVEKLS 125 (219)
T ss_dssp ----EEEEESSGGGGGGS------C-CTTCSEEEECCGGGSCT-HHHHHHHHHH
T ss_pred ----eeEEeCCHHHHHHH------H-hcCCCEEEEechhcCCH-HHHHHHHHHH
Confidence 12334444334322 1 24688999999997543 3555555555
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.38 Score=48.56 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhcCCcEEEEcCCCChHHHHHH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPL--ILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~ai~~--il~~~d~i~~a~TGsGKT~~~l 78 (534)
+.+.-+|++.|=-+...+.|.+. --+|... +.+.. +...+.+++.||+|+|||..+-
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 34567899997666677766543 1122221 11111 1124679999999999998543
No 141
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.21 Score=51.08 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=36.8
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
+++.-+|++.|--+...+.|.+. .+..|--++...+ ...+.+++.||+|+|||...-
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 35667899998888888887643 1222222222111 124679999999999998543
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.16 E-value=0.084 Score=48.87 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.++.+++.|++|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35779999999999998543
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.092 Score=52.65 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.|++|+|||....
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999998643
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.08 E-value=0.1 Score=51.72 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
.+.+++|+||+|. ++......+.+++...+.+..+++.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999999 44445566777777766665555555443
No 145
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.56 E-value=0.24 Score=50.24 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=66.2
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCccc----ccCCCCCC
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA----RGIDIPLL 335 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a----~GlDip~v 335 (534)
...+.++||.+||+.-+..+++.+.. .++.+..++|+.+..++....+.+..++.+|+|+|+-.. .-++...+
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccc
Confidence 35678999999999999999999988 578999999999999988888999999999999994321 12556678
Q ss_pred CEEEEcC
Q 009477 336 DNVINWD 342 (534)
Q Consensus 336 ~~VI~~~ 342 (534)
++||.-.
T Consensus 141 ~~iViDE 147 (414)
T 3oiy_A 141 DFVFVDD 147 (414)
T ss_dssp SEEEESC
T ss_pred cEEEEeC
Confidence 8888544
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.36 Score=48.04 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+..+++.|++|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.13 E-value=0.24 Score=48.10 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=33.2
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhcCCcEEEEcCCCChHHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPL--ILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~ai~~--il~~~d~i~~a~TGsGKT~~~l 78 (534)
...-+|++++-.+.+.+.|.+.- -+|... +.+.. +..++.+++.||+|+|||...-
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34567888877777777665420 011111 01111 1235679999999999998644
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.98 E-value=0.19 Score=49.35 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=33.5
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCcEEEEcCCCChHHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il-----~~~d~i~~a~TGsGKT~~~l 78 (534)
....+|++++-.+...+.|.+.=. +|.. .|.+. ..+.+++.||+|+|||...-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 455679998777777777764310 1111 11111 13569999999999998654
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.97 E-value=0.28 Score=48.22 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.|++|+|||...-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999998654
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.84 E-value=0.23 Score=51.13 Aligned_cols=114 Identities=21% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEE-EcCCCHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL-VGGDSMESQFE 138 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~-~gg~~~~~~~~ 138 (534)
|.-+++.|++|+|||...+-.+...... .|.++++++..-. ..|+...+.......+. ..+ .|..+.+++.+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~--~~l~~g~l~~~~~~~ 272 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLEMP-AAQLTLRMMCSEARIDM--NRVRLGQLTDRDFSR 272 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESSSC-HHHHHHHHHHHHTTCCT--TTCCGGGCCHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECCCC-HHHHHHHHHHHHcCCCH--HHHhCCCCCHHHHHH
Confidence 3458999999999998655433333222 2556888876422 23444332211111111 001 12222222211
Q ss_pred ------HHhCCCCEEEE-----CchHHHHHHHhcCCCCCCCeeEEEEcCCCccccC
Q 009477 139 ------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (534)
Q Consensus 139 ------~~~~~~~IiV~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~ 183 (534)
.+. ...+.|- |...+...+.+.. .-..+++||||..+.+...
T Consensus 273 ~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 273 LVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCCC
Confidence 122 2345553 3344443333210 0125889999999988753
No 151
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.83 E-value=0.59 Score=41.99 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=55.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCccc
Confidence 346999999999999998888776 47899999988766544333 35789999992 222 4688888
Q ss_pred eeEEEEcC
Q 009477 169 VEYVVFDE 176 (534)
Q Consensus 169 ~~~iViDE 176 (534)
+++||.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 98888743
No 152
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.81 E-value=0.9 Score=41.39 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|++|+|||...-
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998543
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.32 Score=47.26 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+||+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999998643 3445556666655555555443
No 154
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.61 E-value=0.3 Score=47.96 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=32.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCcEEEEcCCCChHHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il-----~~~d~i~~a~TGsGKT~~~l 78 (534)
....+|++++=.+.+.+.|.+.= -+|.+ .|.+. ..+.+++.||+|+|||...-
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34568999877777777765320 01111 01221 13679999999999998544
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.58 E-value=0.38 Score=49.66 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
|.-+++.|++|+|||...+-.+...... .|..++++...
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECC
Confidence 4558999999999998655433333222 25568888754
No 156
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.61 Score=47.73 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=33.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhcCCcEEEEcCCCChHHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPL--ILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~ai~~--il~~~d~i~~a~TGsGKT~~~l 78 (534)
++.-+|++.|=-+...+.|.+.= -+|... +.+.. +.-.+.+++.||+|+|||..+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v---~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVI---ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 45668999976667666665420 111111 11111 1124679999999999998644
No 157
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.37 E-value=1.2 Score=45.65 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--hcCCcEEEEcCCCChHHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI--LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~ai~~i--l~~~d~i~~a~TGsGKT~~~l 78 (534)
++.-+|++.|=-+...+.|.+.= -.|... +.+..+ .-.+.+++.||+|+|||+..-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V---~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVV---ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHH---HHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 55678999987778888776531 112111 122211 234779999999999998543
No 158
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.33 E-value=1.3 Score=38.25 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=55.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+- ..+++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~------~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VAA------RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GGT------TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhh------cCCchhc
Confidence 457999999999999988888775 48899999987766544333 34678999993 222 4578888
Q ss_pred eeEEEEcCC
Q 009477 169 VEYVVFDEA 177 (534)
Q Consensus 169 ~~~iViDEa 177 (534)
+++||.-+.
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888887543
No 159
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.31 E-value=0.37 Score=48.56 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
.+.+++.|++|+|||...-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 160
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.29 E-value=0.2 Score=49.53 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=25.6
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
....+|++||+|.+... ....+...+...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 45689999999997643 3455666666655555555544
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.23 E-value=0.32 Score=47.35 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~ 205 (534)
....+++|+||+|.|.... ...+.+.+..-|+...+++.
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 3468899999999986433 33445555544434433333
No 162
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.19 E-value=0.5 Score=49.11 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=55.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCC-------
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD------- 131 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~------- 131 (534)
.+....+.|-||||||++.. .+... .+..+|||+|+...|.|+++.++.|... .+..+..-+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-----~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~ 81 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-----EIAER---HAGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSF 81 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-----HHHHH---SSSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSS
T ss_pred CCCeEEEeCCCchHHHHHHH-----HHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCccccccccc
Confidence 35668899999999998543 22222 2345999999999999999999987532 233222210
Q ss_pred --CHH---HHH----HHHhCCCCEEEECchHHHH
Q 009477 132 --SME---SQF----EELAQNPDIIIATPGRLMH 156 (534)
Q Consensus 132 --~~~---~~~----~~~~~~~~IiV~Tp~~l~~ 156 (534)
..+ ... ........|+|+|...++.
T Consensus 82 ~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp CCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred CCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 011 111 1123456799999888873
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.12 E-value=1.1 Score=41.98 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=29.2
Q ss_pred CCcCCCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 23 GGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
.+|+++.-.+.+.+.+.+.- +..+..+... .+...+.+++.|++|+|||...-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHHH
Confidence 46777766666666665320 1111111110 01234679999999999998644
No 164
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.03 E-value=0.3 Score=56.24 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc--
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-- 325 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-- 325 (534)
|....+-.+......+.++||.++|+.-+..+++.+.. .++.+..+||+.+..++....+.+.+|+.+|+|+|.-
T Consensus 106 KTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL 185 (1104)
T 4ddu_A 106 KTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV 185 (1104)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHH
Confidence 44333333333446788999999999999999999988 4678999999999988888899999999999999942
Q ss_pred ---ccccCCCCCCCEEEEcC
Q 009477 326 ---AARGIDIPLLDNVINWD 342 (534)
Q Consensus 326 ---~a~GlDip~v~~VI~~~ 342 (534)
+.. +++.++++||.-+
T Consensus 186 ~~~l~~-l~~~~l~~lViDE 204 (1104)
T 4ddu_A 186 SKNREK-LSQKRFDFVFVDD 204 (1104)
T ss_dssp HHSHHH-HHTSCCSEEEESC
T ss_pred HHHHHh-hcccCcCEEEEeC
Confidence 222 5567888888544
No 165
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.96 E-value=0.4 Score=55.56 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=65.3
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-CcccccCCCCCCCE
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIPLLDN 337 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-dv~a~GlDip~v~~ 337 (534)
...+.+++|.++|+.-++.+++.+... ++.+..+++..+..++...++....|+.+|+|+| +.+...+.+.++++
T Consensus 649 ~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~l 728 (1151)
T 2eyq_A 649 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 728 (1151)
T ss_dssp HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEE
T ss_pred HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccce
Confidence 446789999999999888888777643 5778899999999999999999999999999999 55666788888888
Q ss_pred EE
Q 009477 338 VI 339 (534)
Q Consensus 338 VI 339 (534)
||
T Consensus 729 vI 730 (1151)
T 2eyq_A 729 LI 730 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 166
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.93 E-value=0.27 Score=43.71 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=77.4
Q ss_pred CcHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCe
Q 009477 46 PTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~--d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~ 123 (534)
..+-|..++..++..+ -.++.+.-|++||...+.-++..... .|+++.+|+|+..-.....+ ..++.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----~Gr~V~vLAp~~~s~~~l~~-------~~~l~ 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----QGREVQIIAADRRSQMNMKQ-------DERLS 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----TTCCEEEECSTTHHHHHHSC-------TTTCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----cCeEEEEEcCchHHHHHHHh-------hcCcC
Confidence 3467899999887643 47789999999998854333332222 68999999999776554322 21111
Q ss_pred EEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHh-cCCCCcE
Q 009477 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ-LSENRQT 202 (534)
Q Consensus 124 ~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~-~~~~~q~ 202 (534)
- +++ |...+. ....+|..=+.+|||||-.|+- .++..++.. ...+.|+
T Consensus 104 ~--------------------~t~--t~~~ll-----~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqv 152 (189)
T 2l8b_A 104 G--------------------ELI--TGRRQL-----LEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQV 152 (189)
T ss_dssp S--------------------CSS--STTTTT-----TTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCE
T ss_pred c--------------------cee--ehhhhh-----cCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEE
Confidence 0 000 211111 1334455666899999998763 333333332 2345777
Q ss_pred EEEEeeC----CHHHHHHHHhcCC
Q 009477 203 LLFSATL----PSALAEFAKAGLR 222 (534)
Q Consensus 203 ll~SAT~----~~~~~~~~~~~l~ 222 (534)
||+--+= .+.+.-+.+.++.
T Consensus 153 vll~~~~RqG~GnAl~vl~~agv~ 176 (189)
T 2l8b_A 153 LITDSGQRTGTGSALMAMKDAGVN 176 (189)
T ss_dssp EEEESSTTTCSHHHHHHHHHTTCC
T ss_pred EEeCCcccccCCCHHHHHHhCCCc
Confidence 6664431 2344445555443
No 167
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=1.4 Score=44.74 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
...-+|++.|=-+...+.|.+. .+..|--++...+ .-.+.+++.||+|+|||..+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 4567899997555666666542 1222222222111 124679999999999998543
No 168
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.82 Score=46.64 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=33.8
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 19 KSKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
+++.-+|++.|=-+...+.|.+. .+..|--++... +...+.+++.||+|+|||...-
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH
Confidence 35567899997666766666542 111111111111 1124679999999999998543
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.74 E-value=0.25 Score=47.97 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=24.0
Q ss_pred CeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 168 ~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
...+||+||+|.+... ....+...+...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999997643 2334555555555555555544
No 170
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.64 E-value=0.31 Score=46.94 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=31.4
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-hcCCcEEEEcCCCChHHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI-LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~ai~~i-l~~~d~i~~a~TGsGKT~~~l 78 (534)
...+|+++.=.+...+.+.+.= . .|... +.+..+ ..++.+++.||+|+|||...-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV-I--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT-H--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH-H--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4567888876777766665321 0 00000 000001 125679999999999998643
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.47 E-value=0.45 Score=44.13 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (534)
.|.-+++.|++|+|||...+-.+...+. .+.+++++.-.. -..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEccC-CHHHHHHHHHHc
Confidence 3566899999999999865533333322 244577776543 234544444433
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.42 E-value=0.21 Score=51.57 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998644
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.32 E-value=0.4 Score=47.78 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998654
No 174
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.31 E-value=0.71 Score=40.56 Aligned_cols=73 Identities=22% Similarity=0.159 Sum_probs=54.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|.- + . ..+++.+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-~----~--~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-C----A--RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-C----C--TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-h----h--cCCCccc
Confidence 458999999999999988877764 57899999988766554333 347899999932 1 1 3578889
Q ss_pred eeEEEEcC
Q 009477 169 VEYVVFDE 176 (534)
Q Consensus 169 ~~~iViDE 176 (534)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99998533
No 175
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.07 E-value=0.72 Score=40.08 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=55.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+....+ .+...|+|+|.- + . ..+++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~----~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-L----A--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-G----T--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-h----h--cCCCccc
Confidence 457999999999999988888775 47889999988766544333 357889999932 2 2 4578888
Q ss_pred eeEEEEcCC
Q 009477 169 VEYVVFDEA 177 (534)
Q Consensus 169 ~~~iViDEa 177 (534)
+++||.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888887544
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.03 E-value=0.53 Score=49.45 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCeeEEEEcCCCccccC--ChHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 167 KSVEYVVFDEADCLFGM--GFAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~--~~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
....+|+|||+|.+... +....+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 35679999999998753 334556666554 345677777764
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.78 E-value=1.5 Score=43.35 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999998654
No 178
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.46 E-value=1 Score=45.33 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.4
Q ss_pred CcEEE--EcCCCChHHHHHH
Q 009477 61 ADVVA--MARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~--~a~TGsGKT~~~l 78 (534)
..+++ .|++|+|||...-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35778 8999999998643
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.34 E-value=0.65 Score=47.78 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998644
No 180
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.28 E-value=0.77 Score=41.64 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
|.-+++.|++|+|||......+. . .+..++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~----~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L----SGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H----HCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H----cCCcEEEEEC
Confidence 45689999999999986553333 1 2455777764
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.18 E-value=0.86 Score=44.85 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEE
Q 009477 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~ 205 (534)
...+++|+||+|.+... -...+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 45789999999987643 344566666665555554443
No 182
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.16 E-value=2.6 Score=38.28 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=54.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.||++.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 457999999999999988888776 48899999998876655433 34688999993 222 4588889
Q ss_pred eeEEEE
Q 009477 169 VEYVVF 174 (534)
Q Consensus 169 ~~~iVi 174 (534)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 998885
No 183
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.69 E-value=0.85 Score=40.06 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=55.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|.- +- ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~------~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-FG------RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-CS------TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-hh------cCcchhh
Confidence 457999999999999988888775 47889999988766544333 357889999942 21 3577888
Q ss_pred eeEEEEcCC
Q 009477 169 VEYVVFDEA 177 (534)
Q Consensus 169 ~~~iViDEa 177 (534)
+.+||.-+.
T Consensus 100 ~~~Vi~~d~ 108 (172)
T 1t5i_A 100 VNIAFNYDM 108 (172)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEECC
Confidence 888887443
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.63 E-value=0.86 Score=44.23 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|++|+|||...-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999998644
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.58 E-value=1 Score=41.08 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|.-+++.|++|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 35668899999999997544
No 186
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.40 E-value=1.9 Score=42.54 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll 204 (534)
.....+|||||+|.+... ....+...+...+....+++
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il 154 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLL 154 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEE
Confidence 345689999999997643 23445555555444333333
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.19 E-value=1.4 Score=43.16 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhc-CCCCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDL-ALQTLKFTKEL 116 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~-~~~~g~~~Lil~PtreL-a~Q~~~~~~~~ 116 (534)
|.-+++.|++|+|||...+-.+.+..... ....+.+++++.-...+ ..++...++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35589999999999986654333321110 00114568888765432 33444444444
No 188
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.70 E-value=1.5 Score=45.66 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=28.7
Q ss_pred eeEEEEcCCCccccCC----------hHHHHHHHHHhcCCCCcEEEEEeeCCH
Q 009477 169 VEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLPS 211 (534)
Q Consensus 169 ~~~iViDEah~l~~~~----------~~~~~~~i~~~~~~~~q~ll~SAT~~~ 211 (534)
.++|++||+|.+.... ....+...+........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999887421 234455556666666677888888443
No 189
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.51 E-value=0.66 Score=43.06 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCcccc-----CChHHHHHHHHHhcCCCCcEEEEEeeCCHH
Q 009477 167 KSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (534)
Q Consensus 167 ~~~~~iViDEah~l~~-----~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~ 212 (534)
.+.+++|+||.-..++ ......+..++..+.....+++++.-....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4678999999987664 334444666666654333455555544333
No 190
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.47 E-value=2.8 Score=38.42 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPM 81 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~ 81 (534)
|.-+++.|++|+|||......+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4668999999999998665433
No 191
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=88.45 E-value=0.7 Score=41.19 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=52.8
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHH----HhCCC
Q 009477 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE----LAQNP 144 (534)
Q Consensus 69 TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~----~~~~~ 144 (534)
..+.|... +.-++.. . ..+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+.... ..+..
T Consensus 28 ~~~~K~~~-L~~ll~~---~--~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~ 97 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNA---T--GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKS 97 (185)
T ss_dssp CGGGHHHH-HHHHHHH---C---CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSS
T ss_pred CcHHHHHH-HHHHHHh---c--CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 35677654 3233332 1 13567999999999999988888774 4788889987654433222 23578
Q ss_pred CEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 145 ~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
.|+|+|. .+- ..+++.++++||.=
T Consensus 98 ~vLvaT~-~~~------~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 98 PILVATA-VAA------RGLDISNVKHVINF 121 (185)
T ss_dssp SEEEEEC-------------CCCSBSEEEES
T ss_pred eEEEEcC-hhh------cCCCcccCCEEEEe
Confidence 8999993 222 35778888888863
No 192
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.00 E-value=0.23 Score=48.17 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.||+|+|||....
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999998644
No 193
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.82 E-value=1.6 Score=42.18 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHH
Q 009477 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (534)
Q Consensus 167 ~~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~ 212 (534)
.++++||+||.=.+. +......+..+.....+..-++.+.++...+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~ 225 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 225 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH
Confidence 467899999995433 2122344444444443333344566664433
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.50 E-value=0.51 Score=48.93 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCCCcCCCCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRK--GYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~il--~~~d~i~~a~TGsGKT~~~l 78 (534)
...+|+++.=.+...+.+.+. .+..+. .+..+- -.+.+++.||+|+|||...-
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 456899987666766666542 011111 111111 12569999999999998643
No 195
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.62 E-value=14 Score=35.54 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=29.9
Q ss_pred chHHHHHHHhcCCCCCCCeeEEEEcCCCcccc---CChHHHHHHHHHhcCCCCcEEEEEee
Q 009477 151 PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG---MGFAEQLHKILGQLSENRQTLLFSAT 208 (534)
Q Consensus 151 p~~l~~~l~~~~~~~l~~~~~iViDEah~l~~---~~~~~~~~~i~~~~~~~~q~ll~SAT 208 (534)
...+++.+.... . .--+|||||+|.+.+ ..+...+..+....+ +. .++++++
T Consensus 124 ~~~l~~~l~~~~--~--~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQAS--K--DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTC--S--SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEES
T ss_pred HHHHHHHHHhcC--C--CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcC
Confidence 345555555421 1 245899999999864 356666666655542 33 3455555
No 196
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.25 E-value=0.61 Score=46.04 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.|.-+++.|++|+|||...+-.+..... .|..+++++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-----~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-----DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCC
Confidence 3455899999999999865543333322 35678998764
No 197
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.04 E-value=1.4 Score=42.86 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=52.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
-+.+.|++|+|||...+-.+.+..... .|.+++++.....+... .+++++-. .
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g---~g~~vlyId~E~s~~~~---ra~~lGvd--~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY---PDAVCLFYDSEFGITPA---YLRSMGVD--P------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC---TTCEEEEEESSCCCCHH---HHHHTTCC--G-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CCceEEEEeccchhhHH---HHHHhCCC--H-------------------
Confidence 478999999999987665444433221 25679999887665432 34555411 1
Q ss_pred CCCCEEEECchHH----HHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 142 QNPDIIIATPGRL----MHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 142 ~~~~IiV~Tp~~l----~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
.++++..|..+ +..+.....+.-..+++||+|-+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444333 222221111233468999999998876
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.01 E-value=4.4 Score=36.55 Aligned_cols=72 Identities=8% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-c-----cccCCCCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPL 334 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-~-----a~GlDip~ 334 (534)
+.++||.++|+..++.+++.+... +..+..++|+.+..... +.+.++..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998887765 67888999998866544 3445567789999942 1 23456667
Q ss_pred CCEEEE
Q 009477 335 LDNVIN 340 (534)
Q Consensus 335 v~~VI~ 340 (534)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 199
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.96 E-value=3.9 Score=40.91 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.|++++-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcc
Confidence 4668999999999999988888775 47899999988766554333 35788999994 333 468899
Q ss_pred CeeEEEE
Q 009477 168 SVEYVVF 174 (534)
Q Consensus 168 ~~~~iVi 174 (534)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998886
No 200
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.73 E-value=0.65 Score=46.19 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 54 i~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
+..+++|.+ +++.|+||||||...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 345567877 788999999999864
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.44 E-value=2.6 Score=47.17 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.++++.|++|+|||...-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 469999999999998644
No 202
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.37 E-value=6.2 Score=38.00 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=54.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+|++-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCccccc
Confidence 457999999999988887777654 58899999997766654433 35789999993 222 4578889
Q ss_pred eeEEEEcCC
Q 009477 169 VEYVVFDEA 177 (534)
Q Consensus 169 ~~~iViDEa 177 (534)
+.+||.=+.
T Consensus 97 v~~VI~~d~ 105 (300)
T 3i32_A 97 VDLVVHYRM 105 (300)
T ss_dssp CSEEEESSC
T ss_pred eeEEEEcCC
Confidence 998885443
No 203
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.33 E-value=2.9 Score=38.62 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=52.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-----ccc-ccCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPL 334 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-----v~a-~GlDip~ 334 (534)
.+.++||.++|+.-++.+.+.+.. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 456799999999998888776654 48889999999887765544432 478999994 222 2346777
Q ss_pred CCEEEEc
Q 009477 335 LDNVINW 341 (534)
Q Consensus 335 v~~VI~~ 341 (534)
+++||.-
T Consensus 177 ~~~lViD 183 (242)
T 3fe2_A 177 TTYLVLD 183 (242)
T ss_dssp CCEEEET
T ss_pred ccEEEEe
Confidence 7777643
No 204
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.31 E-value=1.1 Score=49.60 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=26.2
Q ss_pred CeeEEEEcCCCccccC------C----hHHHHHHHHHhcCCCCcEEEEEeeC
Q 009477 168 SVEYVVFDEADCLFGM------G----FAEQLHKILGQLSENRQTLLFSATL 209 (534)
Q Consensus 168 ~~~~iViDEah~l~~~------~----~~~~~~~i~~~~~~~~q~ll~SAT~ 209 (534)
...+|+|||+|.+... . ...++...+..+.....++++-||-
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 4578999999988732 1 1233344445555556677777773
No 205
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.93 E-value=1.8 Score=45.42 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=54.8
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td 324 (534)
.+.+||.++++.-++...+.|...|+.+..++|+.+..++......+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999988889999999999999994
No 206
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.86 E-value=1.5 Score=53.16 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 54 MPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 54 i~~il~------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
+..++. ++.+++.||+|+|||......+.+... .|.+++++...-.+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEccccc
Confidence 566665 678999999999999876654444332 36678888876433
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.80 E-value=2.6 Score=42.87 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCccccC-ChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHH
Q 009477 167 KSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (534)
Q Consensus 167 ~~~~~iViDEah~l~~~-~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (534)
..+++||+|=+=++... .....+..+.....+..-++.+.|+-..+....++
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~ 231 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHH
Confidence 45788999966544321 12344444444444444456666665444444433
No 208
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.71 E-value=5.9 Score=42.79 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=60.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.|+|+.-+..+.+.+++. ++++..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccC
Confidence 3678999999999999988888876 47888888877665544332 25789999984 222 468899
Q ss_pred CeeEEEEcCCCcc
Q 009477 168 SVEYVVFDEADCL 180 (534)
Q Consensus 168 ~~~~iViDEah~l 180 (534)
++++||+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998764
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.53 E-value=3.1 Score=45.79 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.++++.|++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999998644
No 210
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=83.40 E-value=0.83 Score=44.80 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=18.5
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 44567877 788999999999864
No 211
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.38 E-value=4.8 Score=39.38 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=34.8
Q ss_pred CeeEEEEcCCCccc-cCChHHHHHHHHHhcCCCCcEEEEEeeCCHHHHHHHHhc
Q 009477 168 SVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (534)
Q Consensus 168 ~~~~iViDEah~l~-~~~~~~~~~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~ 220 (534)
..+++++|.+-+.- .......+..+.+.+.+...++.+.+|........++.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 35678899887643 334566777776666666677788888766655555443
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.26 E-value=1.9 Score=46.05 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=54.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHH--hcCCcEEEEEeC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF--RARKTMFLIVTD 324 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F--~~g~~~iLI~Td 324 (534)
.++.+||.++++.-++...+.|...|+.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 357999999999999999999999999999999999999988888888 568899999996
No 213
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.23 E-value=1 Score=45.94 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=32.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (534)
...++++.|+||||||... .+++..+.. .|..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 3568999999999999974 344444443 3567999999988854
No 214
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.22 E-value=3.2 Score=41.08 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+ .+...|+|+|.- +. ..+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~--~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----CS--SCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----hh--cCCCcc
Confidence 3568999999999999988888775 47888999987766544333 247889999942 21 468889
Q ss_pred CeeEEEEcCCC
Q 009477 168 SVEYVVFDEAD 178 (534)
Q Consensus 168 ~~~~iViDEah 178 (534)
++++||.-..-
T Consensus 318 ~~~~Vi~~~~p 328 (391)
T 1xti_A 318 RVNIAFNYDMP 328 (391)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99999976543
No 215
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=82.93 E-value=0.86 Score=46.07 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=18.9
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~l 78 (534)
..++.|.+ +++.|+||||||.+..
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEee
Confidence 34567876 7889999999998754
No 216
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.82 E-value=3.5 Score=40.21 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=55.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.|++++-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS--RGIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH--HHCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCCcc
Confidence 4567999999999999988888775 47888999987766544332 34788999994 222 247788
Q ss_pred CeeEEEEcCC
Q 009477 168 SVEYVVFDEA 177 (534)
Q Consensus 168 ~~~~iViDEa 177 (534)
++++||.-..
T Consensus 306 ~~~~Vi~~~~ 315 (367)
T 1hv8_A 306 DLNCVINYHL 315 (367)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEecC
Confidence 8888886443
No 217
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=82.74 E-value=0.82 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33456776 788999999999974
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.57 E-value=0.62 Score=46.37 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=30.2
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 53 ai~~il~------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
.+..++. |.-+++.|++|+|||...+..+ ..+.. .+.+++++.....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la-~~~~~----~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAI-AEAQK----MGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHH-HHHHH----TTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHH-HHHHh----cCCeEEEEeccccc
Confidence 4556665 3458899999999998554333 23222 24568888765443
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.47 E-value=0.72 Score=50.95 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCCcCCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESLNLSPNVFRAIKRKG---YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
.-+|+++|.-.+..+.|.+.= ...|.-++. + -+...+.+++.||+|+|||+.+-
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~--~-g~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK--F-GMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSS--S-CCCCCSCCEEESSTTSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHh--c-CCCCCceEEEecCCCCCchHHHH
Confidence 346888888888888876541 111111110 0 01123569999999999997543
No 220
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.31 E-value=0.95 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.2
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567876 788999999999864
No 221
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=82.24 E-value=0.97 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.2
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567876 788999999999864
No 222
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=82.09 E-value=0.97 Score=45.15 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34567877 778999999999864
No 223
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=81.96 E-value=0.99 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 54 i~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
+..++.|.+ +++.|+||||||.+.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344567877 778999999999864
No 224
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.96 E-value=0.99 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 44567876 778999999999864
No 225
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=81.92 E-value=0.98 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 54 i~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
+..++.|.+ +++.|+||||||...
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345567877 778999999999864
No 226
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=81.87 E-value=1 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=18.4
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 44567877 778999999999864
No 227
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.85 E-value=4.1 Score=37.43 Aligned_cols=73 Identities=12% Similarity=0.243 Sum_probs=43.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-----cccc-cCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAAR-GIDIPL 334 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-----v~a~-GlDip~ 334 (534)
.+.++||.++|+..+..+.+.+... +..+..++|+.+... ....+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888765 456667777654332 23455567789999993 3322 345556
Q ss_pred CCEEEE
Q 009477 335 LDNVIN 340 (534)
Q Consensus 335 v~~VI~ 340 (534)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666654
No 228
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=81.83 E-value=1 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 53 ai~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
.+..++.|.+ +++.|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678877 778999999999864
No 229
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.79 E-value=0.94 Score=45.83 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHHH
Q 009477 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (534)
Q Consensus 53 ai~~il~~~d--~i~~a~TGsGKT~~~l 78 (534)
.+..++.|.+ +++.|+||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4456678877 7789999999999753
No 230
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=81.74 E-value=1 Score=44.52 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34567877 788999999999864
No 231
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=81.72 E-value=4 Score=37.94 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=51.4
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----cc--ccCCCCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA--RGIDIPL 334 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~a--~GlDip~ 334 (534)
+.++||.++|+..+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999998888777654 78889999988866544332 246789999942 11 3566777
Q ss_pred CCEEEE
Q 009477 335 LDNVIN 340 (534)
Q Consensus 335 v~~VI~ 340 (534)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 777664
No 232
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=81.71 E-value=1 Score=44.74 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=17.9
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q 009477 56 LILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 56 ~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
.++.|.+ +++.|+||||||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4567776 788999999999864
No 233
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=81.68 E-value=0.97 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=18.4
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 44567877 788999999999864
No 234
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=81.67 E-value=0.92 Score=44.97 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHHH
Q 009477 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (534)
Q Consensus 53 ai~~il~~~d--~i~~a~TGsGKT~~~l 78 (534)
.+..++.|.+ +++.|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4555677877 7789999999999753
No 235
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=81.61 E-value=1 Score=44.74 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 44567877 788999999999864
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.41 E-value=3.3 Score=45.57 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCc--------EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCC
Q 009477 51 RKTMPLILSGAD--------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (534)
Q Consensus 51 ~~ai~~il~~~d--------~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (534)
..++.....+.. +++.||||+|||...- .+.......+...+.+-.+ .+......
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~-----ala~~l~~~~~~~i~i~~s------------~~~~~~~~ 566 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR-----ALAESIFGDEESMIRIDMS------------EYMEKHST 566 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH-----HHHHHHHSCTTCEEEEEGG------------GGCSSCCC
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH-----HHHHHhcCCCcceEEEech------------hccccccc
Q ss_pred eEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCccccCChHHHHHHHHHh-------
Q 009477 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ------- 195 (534)
Q Consensus 123 ~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~~~~~~~~~~i~~~------- 195 (534)
. .+.+...+... ..++|+|||+|.+ .......+..++..
T Consensus 567 ~---------------------------~~~l~~~~~~~------~~~vl~lDEi~~~-~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 567 S---------------------------GGQLTEKVRRK------PYSVVLLDAIEKA-HPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp C------------------------------CHHHHHHC------SSSEEEEECGGGS-CHHHHHHHHHHHHHSBCC---
T ss_pred c---------------------------cchhhHHHHhC------CCeEEEEeCcccc-CHHHHHHHHHHhccCeEEcCC
Q ss_pred ----cCCCCcEEEEE
Q 009477 196 ----LSENRQTLLFS 206 (534)
Q Consensus 196 ----~~~~~q~ll~S 206 (534)
...+..+++.|
T Consensus 613 g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 613 GRTVDFRNTILIMTS 627 (758)
T ss_dssp --CCBCTTCEEEEEE
T ss_pred CCEeccCCeEEEEeC
No 237
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=81.25 E-value=5.5 Score=40.30 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEc--------CCCHHHHHHHH
Q 009477 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEEL 140 (534)
Q Consensus 69 TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~~~~~~~ 140 (534)
..++|..... -++...... ..+.++||.++++.-+..+.+.++.. ++.+..++| +.+..++...+
T Consensus 340 ~~~~k~~~l~-~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDKLK-EIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHHHH-HHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHHHH-HHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH
Confidence 4566765433 333332211 13567999999999999988888775 578888888 44443332222
Q ss_pred ----hCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 141 ----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 141 ----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
.+..+|+|+|. .+- ..+++..+++||+-+..
T Consensus 413 ~~F~~~~~~vLv~T~-~~~------~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 DEFARGEFNVLVATS-VGE------EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHTSCSEEEECG-GGG------GGGGSTTCCEEEESSCC
T ss_pred HHHhcCCceEEEECC-ccc------cCCCchhCCEEEEeCCC
Confidence 35688999993 222 35788889988865544
No 238
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.17 E-value=12 Score=39.11 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCE
Q 009477 71 SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDI 146 (534)
Q Consensus 71 sGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~I 146 (534)
..+....+-.+...+... ..+.++||.|+|+.-+..+++.++.... .++.+..++|+....+....+ .+..+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp THHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred HhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 344443343344444332 2466899999999999999998887632 357899999988776544333 357899
Q ss_pred EEECchHHHHHHHhcCCCCCCCeeEEEEcCC
Q 009477 147 IIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 147 iV~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 177 (534)
+|||. .+. ..+++.++++||.-..
T Consensus 396 LvaT~-----~~~--~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 396 LVCTD-----VGA--RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp EEECG-----GGT--SSCCCTTCCEEEEESC
T ss_pred EEEcc-----hhh--cCCCcccCCEEEEECC
Confidence 99995 222 4688889998886553
No 239
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=81.14 E-value=1.1 Score=45.08 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=18.9
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~l 78 (534)
..++.|.+ +++.|+||||||.+..
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 44567876 7889999999998753
No 240
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=81.13 E-value=4.5 Score=40.26 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=55.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 457999999999999998888876 47788999988766654333 35788999994 222 4688999
Q ss_pred eeEEEEcC
Q 009477 169 VEYVVFDE 176 (534)
Q Consensus 169 ~~~iViDE 176 (534)
+++||.-.
T Consensus 335 ~~~Vi~~~ 342 (412)
T 3fht_A 335 VSVVINFD 342 (412)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99988533
No 241
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.01 E-value=4.1 Score=40.48 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=55.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|++++-+..+++.++..+ +.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 4579999999999999998888764 7788899988766544333 34678999994 222 4688889
Q ss_pred eeEEEEcC
Q 009477 169 VEYVVFDE 176 (534)
Q Consensus 169 ~~~iViDE 176 (534)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888643
No 242
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=80.74 E-value=24 Score=30.56 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCCeEEEeccccccCCCceEEEEEe-chhhHHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc
Q 009477 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE 289 (534)
Q Consensus 211 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~ 289 (534)
..+..++...+.+...+... .. ......+..+ ...+-...+...+.......+.+-|.+++..++..+.+.|...
T Consensus 9 ~~Il~~An~li~~~~~~~~~--~~--~G~~p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~ 84 (174)
T 3dmn_A 9 QQITDFTKEILVNGEAVTAF--DR--QGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKAR 84 (174)
T ss_dssp HHHHHHHHTTSCC----------C--CCCCCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcccCC--CC--CCCCCEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHc
Confidence 56667777766543211111 11 1111223333 2333444555555442123567889999999999999999999
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccCCCCCCCEEEEcCC
Q 009477 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (534)
Q Consensus 290 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~GlDip~v~~VI~~~~ 343 (534)
|+++..+.++.. ...-.|.|.|--.++|+.+ +.||.+++
T Consensus 85 gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 85 GEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 988777765431 1134699999999999998 66776664
No 243
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.69 E-value=5.3 Score=41.57 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
.+++.|++|+|||..+.-.+. .+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~----~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQR----KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH----TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh----CCCeEEEEec
Confidence 377889999999987653332 2222 3566777765
No 244
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=80.61 E-value=1.1 Score=44.89 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=17.8
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q 009477 56 LILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 56 ~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
.++.|.+ +++.|+||||||...
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 4566776 788999999999864
No 245
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.60 E-value=0.95 Score=44.82 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=19.4
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHHH
Q 009477 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (534)
Q Consensus 54 i~~il~~~d--~i~~a~TGsGKT~~~l 78 (534)
+..++.|.+ +++.|+||||||....
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344567877 7789999999998754
No 246
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=80.54 E-value=1 Score=44.98 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 53 ai~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
.+..++.|.+ +++.|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4456678877 778999999999864
No 247
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.53 E-value=4.9 Score=36.75 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-c----cc--cCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----AR--GIDIP 333 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-~----a~--GlDip 333 (534)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+.......+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4678999999999999998888765 36788888887654433222 46789999942 1 12 24555
Q ss_pred CCCEEEE
Q 009477 334 LLDNVIN 340 (534)
Q Consensus 334 ~v~~VI~ 340 (534)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6666554
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.27 E-value=1.8 Score=44.31 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=22.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
.+++.|++|+|||+...-.+.. +... .|.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~-l~~~---~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKF-LREK---HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHHT---SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHh---cCCeEEEEe
Confidence 3667899999999876533332 2221 166777765
No 249
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.15 E-value=1.1 Score=45.39 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 53 ai~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
.+..++.|.+ +++.|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4566778877 788999999999864
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.08 E-value=4.4 Score=40.88 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=24.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhc-CCCCCeEEEEEcCc
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPT 102 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~-~~~~g~~~Lil~Pt 102 (534)
.-+.+.|++|+|||......++..+... ....+..++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4588999999999986553333322211 01124467777643
No 251
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=80.00 E-value=7.2 Score=42.16 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.|+|+.-+..+.+.+.+. ++++..++|+....+....+ .+..+|+|||.- + . ..+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-l----~--~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-L----R--EGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-C----C--TTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-h----h--cCccCC
Confidence 3668999999999999988888876 47888888887665544332 256899999832 2 2 468889
Q ss_pred CeeEEEEcCCCcc
Q 009477 168 SVEYVVFDEADCL 180 (534)
Q Consensus 168 ~~~~iViDEah~l 180 (534)
++++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888754
No 252
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=79.96 E-value=1.2 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 009477 55 PLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 55 ~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
..++.|.+ +++.|+||||||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34467877 788999999999864
No 253
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.79 E-value=1.5 Score=40.55 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (534)
|.-+++.|++|+|||...+-.+.+.+... +..+++++-.- -..++...+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~----~~~v~~~s~E~-~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY----GEPGVFVTLEE-RARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH----CCCEEEEESSS-CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc----CCCceeecccC-CHHHHHHHHH
Confidence 45689999999999986554444333332 44577776542 2334444443
No 254
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=79.65 E-value=1.1 Score=44.97 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred CcHHHHHHHH--------HHhcCCc--EEEEcCCCChHHHHH
Q 009477 46 PTPIQRKTMP--------LILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 46 ~~~~Q~~ai~--------~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
+..-|.+++. .++.|.+ +++.|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4445666664 3456776 778999999999864
No 255
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.23 E-value=9.3 Score=33.81 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=49.8
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----cc-ccCCCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPLLD 336 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~a-~GlDip~v~ 336 (534)
.+.++||.++|+..+..+.+.+... .+.+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4668999999999999999988876 466778888876554433322 25789999941 11 235566666
Q ss_pred EEEE
Q 009477 337 NVIN 340 (534)
Q Consensus 337 ~VI~ 340 (534)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 256
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=79.17 E-value=1.9 Score=39.21 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 009477 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 42 g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~ 77 (534)
.+..-+.-|..++..+..|.-+.+.|+.|||||+.+
T Consensus 4 ~i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 344445667788888888988999999999999854
No 257
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.80 E-value=2.9 Score=39.15 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+..+++.|++|+|||...-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45789999999999998543
No 258
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.75 E-value=33 Score=33.43 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3567999999999999988888775 47788899988766544333 34688999994 222 468899
Q ss_pred CeeEEEEcCCCc
Q 009477 168 SVEYVVFDEADC 179 (534)
Q Consensus 168 ~~~~iViDEah~ 179 (534)
++++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999999866554
No 259
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.63 E-value=6.1 Score=35.86 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc---CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----c-cccCCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----A-ARGIDIPLL 335 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~---~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~-a~GlDip~v 335 (534)
.+.++||.++|+.-++.+++.+... ++.+..++|+.+...+... +. ...+|+|+|.- . ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 5678999999999999999888874 6778888887765543322 22 34789999942 1 234556666
Q ss_pred CEEEE
Q 009477 336 DNVIN 340 (534)
Q Consensus 336 ~~VI~ 340 (534)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 66664
No 260
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=78.47 E-value=4.4 Score=46.40 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHc----CC----CceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-
Q 009477 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD- 324 (534)
Q Consensus 254 ~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~----~~----~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td- 324 (534)
..+-.+......+.++||.++|+.-+..+++.+... ++ .+..++|+.+...+....+.+++ .+|+|+|+
T Consensus 87 ~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~ 164 (1054)
T 1gku_B 87 FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQ 164 (1054)
T ss_dssp HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHH
T ss_pred HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHH
Confidence 333344444456789999999999999888877653 55 78899999998888777777776 89999994
Q ss_pred cccccCC-CCCCCEEEE
Q 009477 325 VAARGID-IPLLDNVIN 340 (534)
Q Consensus 325 v~a~GlD-ip~v~~VI~ 340 (534)
.+..-+. +..+++||.
T Consensus 165 ~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 165 FLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp HHHHCSTTSCCCSEEEE
T ss_pred HHHHHHHHhccCCEEEE
Confidence 2222222 557778774
No 261
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=78.40 E-value=1.2 Score=44.58 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 54 i~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
+..++.|.+ +++.|+||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344567776 788999999999864
No 262
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=78.16 E-value=14 Score=38.16 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=53.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.+.+|++.+++-+..+.+.+.+.+ .++..++|+....+....+ .+..+|+|+|+..+- ..+++.+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------ccccccc
Confidence 3345555555666666666655543 4888899887765543322 457789999977665 4688999
Q ss_pred eeEEEEcCCCc
Q 009477 169 VEYVVFDEADC 179 (534)
Q Consensus 169 ~~~iViDEah~ 179 (534)
+.+||+.....
T Consensus 417 v~~vi~~~~~~ 427 (510)
T 2oca_A 417 LHHVVLAHGVK 427 (510)
T ss_dssp EEEEEESSCCC
T ss_pred CcEEEEeCCCC
Confidence 99999988873
No 263
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.12 E-value=5.9 Score=35.16 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=48.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----ccc-cCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR-GIDIP 333 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~a~-GlDip 333 (534)
.+.++||.++|+..++.+++.+... +..+..++|+.+...... .+ .+..+|+|+|.- +.+ .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999999988887654 567788888887654332 22 346789999952 222 23455
Q ss_pred CCCEEEE
Q 009477 334 LLDNVIN 340 (534)
Q Consensus 334 ~v~~VI~ 340 (534)
.+++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 5666553
No 264
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.72 E-value=2.8 Score=42.57 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhc--CCcEEEEcCCCChHHHH
Q 009477 48 PIQRKTMPLILS--GADVVAMARTGSGKTAA 76 (534)
Q Consensus 48 ~~Q~~ai~~il~--~~d~i~~a~TGsGKT~~ 76 (534)
+-+..++..++. +.-+++.||||||||+.
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 345555655443 34478999999999985
No 265
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=77.70 E-value=8.8 Score=42.51 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~ 77 (534)
.++.+++.|++|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999854
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.64 E-value=8.3 Score=39.92 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+.+.|++|||||+..-
T Consensus 296 I~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCcccHHHHHH
Confidence 7789999999998543
No 267
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.10 E-value=0.47 Score=41.61 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=50.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+- ..+++.+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~------~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VAA------RGIDIPD 98 (170)
Confidence 467999999999999888877665 47788888876554433222 23678999993 222 3467777
Q ss_pred eeEEEEcC
Q 009477 169 VEYVVFDE 176 (534)
Q Consensus 169 ~~~iViDE 176 (534)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77777643
No 268
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.52 E-value=17 Score=38.28 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=59.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.|+|+.-+..+++.++.... .++.+..++|+....+....+ .+..+|+|||.- +. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hh--cCCCcc
Confidence 356899999999999999998887532 357889999988766544333 357889999952 22 468888
Q ss_pred CeeEEEEcCCC
Q 009477 168 SVEYVVFDEAD 178 (534)
Q Consensus 168 ~~~~iViDEah 178 (534)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 99998876543
No 269
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.37 E-value=4.1 Score=37.22 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-c-----cccCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIP 333 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-~-----a~GlDip 333 (534)
.+.++||.++|+.-++.+.+.+... ++.+..++|+.+...+...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999998888764 57788899988876554332 35789999942 1 1234455
Q ss_pred CCCEEEE
Q 009477 334 LLDNVIN 340 (534)
Q Consensus 334 ~v~~VI~ 340 (534)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 5555553
No 270
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.21 E-value=6.2 Score=41.19 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCChHHHH
Q 009477 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAA 76 (534)
Q Consensus 35 ~~~l~~~g~~~~~~~Q~~ai~~-il~~~d~i~~a~TGsGKT~~ 76 (534)
+..+.+.|. +++.+..-+.. +..|..+++.|+||||||+.
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555563 34444444543 45678899999999999985
No 271
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.11 E-value=9.8 Score=35.54 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-----ccc--ccCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA--RGIDIP 333 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-----v~a--~GlDip 333 (534)
.+.++||.++|+.-++.+.+.+... +..+..++|+......... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999988888764 5667788888776554332 3333 78999993 222 246677
Q ss_pred CCCEEEE
Q 009477 334 LLDNVIN 340 (534)
Q Consensus 334 ~v~~VI~ 340 (534)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 272
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.59 E-value=5 Score=38.21 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|++|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999998644
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=75.35 E-value=1.8 Score=38.17 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|+-+++.||+|||||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999998543
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=75.03 E-value=2.3 Score=41.41 Aligned_cols=49 Identities=20% Similarity=-0.013 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (534)
|.-+++.|++|+|||...+-.+..... .|..+++++.. +-..|+...+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-----~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-----NDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-----TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEECC-CCHHHHHHHHH
Confidence 455999999999999765543333322 24678888865 22344444433
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=74.95 E-value=5.3 Score=38.43 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLV 79 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~ 79 (534)
-+.+.|++|+|||.....
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 366789999999986553
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.43 E-value=4 Score=39.49 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+.+.|++|+|||+...
T Consensus 107 i~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCChHHHHHH
Confidence 6789999999998654
No 277
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.16 E-value=3.9 Score=41.65 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=47.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.+++|.||+++-+..+++.++.. ++++..++|+...........+..+|+|+|. .+. ..+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e--~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISE--MGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGG--TSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHH--cCcccC-CcEE
Confidence 447999999999999988888876 5889999987443332233346889999994 233 246665 4444
No 278
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.96 E-value=3.4 Score=41.03 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAA 76 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~ 76 (534)
+..|..+++.|+||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44688999999999999984
No 279
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=73.90 E-value=3.5 Score=42.16 Aligned_cols=70 Identities=17% Similarity=0.042 Sum_probs=48.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.++||.||+++-+..+++.++.. ++++..++|............+..+|+|+|. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE--MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STT--CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceEE
Confidence 567999999999999998888875 4789999986544433333346789999994 222 357777 8777
Q ss_pred EE
Q 009477 173 VF 174 (534)
Q Consensus 173 Vi 174 (534)
|.
T Consensus 245 I~ 246 (440)
T 1yks_A 245 LD 246 (440)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 280
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.83 E-value=1.8 Score=42.56 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+-+++.||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998655
No 281
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.76 E-value=6.6 Score=37.09 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH-HHHHHhcCC-----cEEEEcCCCChHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQRK-TMPLILSGA-----DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~-ai~~il~~~-----d~i~~a~TGsGKT~~~l 78 (534)
--..+.+-|+-.||. |++-. ++..++.++ .+++.||+|+|||..+.
T Consensus 71 ~~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 345788888888877 55543 356666654 38999999999998665
No 282
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=73.69 E-value=1.7 Score=42.25 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+-+++.||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999998655
No 283
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.56 E-value=4.3 Score=42.28 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=26.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 41 ~g~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
.++.--...-..+.-.+..+.++++.||+|+|||...-
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 34443444445555666778999999999999998543
No 284
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=73.54 E-value=2.3 Score=42.26 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=16.4
Q ss_pred cCCc--EEEEcCCCChHHHHHH
Q 009477 59 SGAD--VVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d--~i~~a~TGsGKT~~~l 78 (534)
.|.+ +++.|+||||||....
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3776 6899999999998653
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.20 E-value=1.7 Score=38.87 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.++.+++.|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998654
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.00 E-value=2.2 Score=38.55 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|+-+++.||+|||||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45668899999999998644
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.95 E-value=1.8 Score=38.08 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999999655
No 288
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.77 E-value=10 Score=46.04 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=65.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC-CCeEEEEEcCCCHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQF 137 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~ 137 (534)
.++.+++.|++|+|||......+.+.+. .|.+++++.-. ++..++. .+.++-.. ++. +..-.. .+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k-----~Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~---~~~pd~-~e-- 1145 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAE-HALDPIY--ARKLGVDIDNLL---CSQPDT-GE-- 1145 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTT-SCCCHHH--HHHTTCCTTTCE---EECCSS-HH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEEcc-ccHHHHH--HHHcCCChhHhe---eecCcc-hH--
Confidence 4678999999999999877655555443 36678888654 3334433 33443221 111 111000 00
Q ss_pred HHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCcccc-------C-----C-----hHHHHHHHHHhcCCCC
Q 009477 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-------M-----G-----FAEQLHKILGQLSENR 200 (534)
Q Consensus 138 ~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~l~~-------~-----~-----~~~~~~~i~~~~~~~~ 200 (534)
...++.+.+.+ ....++||+||...+.. + | +...+.++...+....
T Consensus 1146 ------------~~~~i~~~l~~-----~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~ 1208 (2050)
T 3cmu_A 1146 ------------QALEICDALAR-----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1208 (2050)
T ss_dssp ------------HHHHHHHHHHH-----HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------HHHHHHHHHHH-----hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 01122333332 34688999999876621 1 2 2233555666666666
Q ss_pred cEEEEEeeC
Q 009477 201 QTLLFSATL 209 (534)
Q Consensus 201 q~ll~SAT~ 209 (534)
-++++|...
T Consensus 1209 stiI~tN~~ 1217 (2050)
T 3cmu_A 1209 TLLIFINQI 1217 (2050)
T ss_dssp CEEEEEECC
T ss_pred eEEEEecCC
Confidence 677777654
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.75 E-value=1.8 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~ 77 (534)
+..|.-+.+.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 445667899999999999853
No 290
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=72.58 E-value=4.3 Score=43.94 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=48.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.++||.||+++-+..+++.++.. ++++..++|............+..+|+|+|. .+. ..+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e--~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISE--MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGG--TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhh--cceeeC-CcEE
Confidence 567999999999999888877765 5889999985332222222235789999993 222 357777 7776
Q ss_pred E
Q 009477 173 V 173 (534)
Q Consensus 173 V 173 (534)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.58 E-value=1.8 Score=38.90 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~ 77 (534)
.|+-+++.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999854
No 292
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=72.14 E-value=9.5 Score=37.96 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=55.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.|+++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|.- +. ..+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----WA--RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----GS--SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----hh--CcCCccc
Confidence 347999999999999988888775 47888999988766544333 357889999942 22 4688999
Q ss_pred eeEEEEcC
Q 009477 169 VEYVVFDE 176 (534)
Q Consensus 169 ~~~iViDE 176 (534)
+++||.-.
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99988643
No 293
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.07 E-value=1.9 Score=37.59 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
++-+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999654
No 294
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=72.04 E-value=4.1 Score=39.90 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 009477 58 LSGADVVAMARTGSGKTAA 76 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~ 76 (534)
..|..+.+.|+||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688999999999999984
No 295
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.92 E-value=2.1 Score=41.51 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-++++||||||||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999998655
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.80 E-value=1.9 Score=38.57 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l 78 (534)
..|.-+++.|++|||||+..-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 456778999999999998543
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=71.56 E-value=3 Score=41.77 Aligned_cols=42 Identities=24% Similarity=0.473 Sum_probs=28.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreL 105 (534)
.+.++++.|+||||||...-..+.+ +.. .|.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~-~~~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR-EYM----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH-HHT----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH-HHH----CCCEEEEEeCCcCH
Confidence 4678999999999999865433332 222 35668888887653
No 298
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.53 E-value=2.3 Score=41.42 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=20.1
Q ss_pred HHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 53 TMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 53 ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
....+..+.++++.|++|+|||...-
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 33445568899999999999998543
No 299
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.40 E-value=1.8 Score=37.20 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999654
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.28 E-value=2.2 Score=39.96 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
++++|+||||||....
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999998543
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=71.16 E-value=1.5 Score=38.44 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l 78 (534)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356779999999999999654
No 302
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.07 E-value=2 Score=38.79 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
++-+++.|+||+|||...+
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999998655
No 303
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=70.91 E-value=1.5 Score=38.72 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~ 77 (534)
..|.-+++.|++|||||+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999854
No 304
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.89 E-value=7.5 Score=49.35 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=33.5
Q ss_pred CHHHHHHHHHCCCCCCcHHHH-HHH---HHHhcCCcEEEEcCCCChHHHHHHH
Q 009477 31 SPNVFRAIKRKGYKVPTPIQR-KTM---PLILSGADVVAMARTGSGKTAAFLV 79 (534)
Q Consensus 31 ~~~l~~~l~~~g~~~~~~~Q~-~ai---~~il~~~d~i~~a~TGsGKT~~~l~ 79 (534)
...+.+.+.++|+. ++|.+. +++ ..+.....+++.||||||||.++-+
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 45566677788887 555544 444 3333466799999999999998753
No 305
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.80 E-value=9.7 Score=35.15 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=48.4
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-c-----cccCCCCCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-~-----a~GlDip~v 335 (534)
+.++||.++|+..+..+.+.+... ++.+..++|+.+....... . ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888877654 4667788888765543322 2 346789999942 1 123456666
Q ss_pred CEEEE
Q 009477 336 DNVIN 340 (534)
Q Consensus 336 ~~VI~ 340 (534)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76664
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=70.80 E-value=1.9 Score=38.71 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=17.8
Q ss_pred HhcCCcEEEEcCCCChHHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~l 78 (534)
+..++-++++|++|||||...-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 3457789999999999998543
No 307
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.73 E-value=4.2 Score=39.14 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
++-+.+.|++|+|||+.....+.. +... .|.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~-l~~~---~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI-SMLE---KHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH-HHHT---TCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHHh---cCCEEEEEe
Confidence 455888999999999865533322 2211 355566654
No 308
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.71 E-value=16 Score=28.84 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=42.6
Q ss_pred EEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 009477 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (534)
Q Consensus 269 ~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iL 320 (534)
.+||.+......++...++..|..+..+|++.+...|..-++.|.....++-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 3567777777777888888899999999999999999999999987665544
No 309
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=70.70 E-value=3.3 Score=48.00 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=32.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (534)
-+|.|..|||||.+.+--+...+.... .+.++|+|||+. ++-++.+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~--~~~~il~lVP~q-~TFt~~~r 50 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP--FGKPIIFLVPDQ-MTFLMEYE 50 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT--TSSCEEEECCGG-GHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC--CCCcEEEEecCc-ccHHHHHH
Confidence 368899999999987766665555432 356799999986 34443333
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.44 E-value=2.1 Score=38.24 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|.-+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56678899999999998543
No 311
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=70.19 E-value=9.2 Score=39.69 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=54.8
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEc--------CCCHHHHHH---
Q 009477 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFE--- 138 (534)
Q Consensus 70 GsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~~~~~--- 138 (534)
.++|..... -++..+... ..+.++||.|+++.-+..+.+.++..+...++++..++| +.+..++..
T Consensus 369 ~~~k~~~l~-~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 369 ENPKLRDLY-LVLQEEYHL--KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp CCHHHHHHH-HHHHHHHHH--CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CCHHHHHHH-HHHHHHhcc--CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 366765433 333332221 134679999999999999999998876444455555555 433333222
Q ss_pred HHh--CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEE
Q 009477 139 ELA--QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (534)
Q Consensus 139 ~~~--~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iVi 174 (534)
... +..+|+|+|. .+. ..+++.++++||.
T Consensus 446 ~F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 446 AFRASGDNNILIATS-----VAD--EGIDIAECNLVIL 476 (555)
T ss_dssp ------CCSEEEECC-----CTT--CCEETTSCSEEEE
T ss_pred HHhcCCCeeEEEEcc-----hhh--cCCccccCCEEEE
Confidence 222 4578999994 222 4578888888876
No 312
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.82 E-value=6.5 Score=40.92 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
+.++++.|.||||||.+.-..+...+.... ....+++++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~-p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQ-PEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCC-TTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCC-CceEEEEEECCc
Confidence 457999999999999875544444444332 224455555554
No 313
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.51 E-value=2.9 Score=37.63 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l 78 (534)
..|+-+++.||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 467789999999999998543
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=69.46 E-value=2.4 Score=37.46 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 009477 61 ADVVAMARTGSGKTAAF 77 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~ 77 (534)
+-+.+.||+|||||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 315
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.37 E-value=6.2 Score=35.80 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHH
Q 009477 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 32 ~~l~~~l~~~g~~~~~~~Q~~ai~~il~~----~d~i~~a~TGsGKT~~~l 78 (534)
..+.+-|+-.|+. +... ..++..++.+ +.+++.||+|+|||..+.
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 4666666655544 4344 4455555554 248999999999998654
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=69.13 E-value=2.4 Score=37.27 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|+.|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568999999999998643
No 317
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.79 E-value=4.4 Score=39.11 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
....+++.|++|+|||.+.-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35679999999999998643
No 318
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=68.62 E-value=4.2 Score=40.18 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
....+++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998654
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.58 E-value=2.6 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+..+++.|+.|||||+..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 320
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.32 E-value=8.2 Score=48.41 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHhcCCcEEEEcCCCChHHHHHHH
Q 009477 30 LSPNVFRAIKRKGYKVPTPIQ-RKTM---PLILSGADVVAMARTGSGKTAAFLV 79 (534)
Q Consensus 30 l~~~l~~~l~~~g~~~~~~~Q-~~ai---~~il~~~d~i~~a~TGsGKT~~~l~ 79 (534)
+.+.+.+.+.+.|+. +++.+ .+++ ..+..++.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344566677778887 56655 3333 3334567899999999999997653
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.06 E-value=2.7 Score=37.09 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+..+++.|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998654
No 322
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.02 E-value=3.3 Score=37.29 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.4
Q ss_pred EEEEcCCCChHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLV 79 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~ 79 (534)
.++.|+.|||||.....
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 68999999999997543
No 323
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.95 E-value=13 Score=37.66 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=53.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCCeeE
Q 009477 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (534)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~ 171 (534)
+||.|+|+.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCCE
Confidence 999999999999988888765 47899999988766554433 34789999995 222 4688999999
Q ss_pred EEE
Q 009477 172 VVF 174 (534)
Q Consensus 172 iVi 174 (534)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=67.82 E-value=3.9 Score=35.83 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|+.|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998643
No 325
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=67.73 E-value=3.8 Score=36.47 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=42.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHh
Q 009477 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (534)
Q Consensus 64 i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~ 141 (534)
+..+.-|+|||....-.+... .. .|.+++++=. ...+... +... .
T Consensus 6 v~s~kgG~GKTt~a~~la~~l-a~----~g~~vlliD~D~~~~~~~~-------~~~~---------------------~ 52 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATAL-SR----SGYNIAVVDTDPQMSLTNW-------SKAG---------------------K 52 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHH-HH----TTCCEEEEECCTTCHHHHH-------HTTS---------------------C
T ss_pred EEeCCCCccHHHHHHHHHHHH-HH----CCCeEEEEECCCCCCHHHH-------HhcC---------------------C
Confidence 345678999998766443332 22 3566777753 2222211 1100 1
Q ss_pred CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEcCCCc
Q 009477 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (534)
Q Consensus 142 ~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah~ 179 (534)
.+.+++-+.+..+...+... -..+++||+|=.-.
T Consensus 53 ~~~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 53 AAFDVFTAASEKDVYGIRKD----LADYDFAIVDGAGS 86 (206)
T ss_dssp CSSEEEECCSHHHHHTHHHH----TTTSSEEEEECCSS
T ss_pred CCCcEEecCcHHHHHHHHHh----cCCCCEEEEECCCC
Confidence 12445555556676666542 23578999996543
No 326
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.50 E-value=2.9 Score=37.31 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 009477 61 ADVVAMARTGSGKTAAF 77 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~ 77 (534)
|-+|++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999854
No 327
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.48 E-value=5.4 Score=38.67 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=32.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhc-------CCCCC----eEEEEEcCcHHH-HHHHHHHHHHhh
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-------VPQGG----VRALILSPTRDL-ALQTLKFTKELG 117 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~-------~~~~g----~~~Lil~PtreL-a~Q~~~~~~~~~ 117 (534)
.-+++.|++|+|||...+-.+.+..... ....| .+++++.-...+ ..++...++.++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 4589999999999986654433321110 00123 678888865432 345554555543
No 328
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.35 E-value=2.3 Score=39.28 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----ccc---cCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR---GIDI 332 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~a~---GlDi 332 (534)
.+.++||.++|+.-+..+++.+... ++.+..++|+..... .......+..+|+|+|.- +.+ ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4568999999999999998888765 555665554421111 111223456789999932 212 3666
Q ss_pred CCCCEEEE
Q 009477 333 PLLDNVIN 340 (534)
Q Consensus 333 p~v~~VI~ 340 (534)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77777664
No 329
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.21 E-value=3 Score=40.70 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-++++|+||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998654
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=67.10 E-value=3 Score=38.06 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~ 77 (534)
..|+-+.+.||+|||||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999843
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=66.93 E-value=4.1 Score=36.75 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
.++.++... .+..+.-+++.|+.|||||...-
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 456666663 35567778899999999998543
No 332
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=66.71 E-value=2.6 Score=36.52 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|++|||||...-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37899999999998654
No 333
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=66.68 E-value=8.3 Score=40.63 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
.++++.|.||||||.+.-..+...+..+. ....+++++=|-.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~s-P~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKST-PSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCC-TTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCC-CcceEEEEeCCCh
Confidence 57999999999999875555554444332 2346666666653
No 334
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.60 E-value=5.4 Score=40.83 Aligned_cols=38 Identities=24% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
|.-+++.|++|+|||...+--+..... .|.++++++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~-----~g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD-----NDDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH-----TTCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH-----cCCEEEEEECC
Confidence 455999999999999866544443332 25678998865
No 335
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=66.51 E-value=3.7 Score=44.90 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.7
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 009477 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (534)
Q Consensus 53 ai~~il~~~d--~i~~a~TGsGKT~~~ 77 (534)
.+..+++|.+ ++..|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788887 677899999999864
No 336
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=66.39 E-value=6.6 Score=40.13 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=47.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.++||.|||+.-+.++++.++.. ++.+..++|............+..+|+|+|. .+. ..+++.+ .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHH--hCcCCCC-CEE
Confidence 347999999999999988887664 5788888886543222222235789999994 233 3577777 666
Q ss_pred E
Q 009477 173 V 173 (534)
Q Consensus 173 V 173 (534)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
No 337
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=66.37 E-value=2.7 Score=36.15 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|+.|||||++.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 338
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=66.13 E-value=12 Score=33.56 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcc------cccCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA------ARGIDIPL 334 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~------a~GlDip~ 334 (534)
.+.++||.++++..++.+++.+... +..+..++|+.+....... +. +.+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888877754 6777888887665443322 22 37899999421 23445555
Q ss_pred CCEEEE
Q 009477 335 LDNVIN 340 (534)
Q Consensus 335 v~~VI~ 340 (534)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666553
No 339
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.09 E-value=34 Score=37.55 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=56.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhh-------ccCCCeEEEEEcCCCHHHHHHHHh---------CCCCEEEECchHHHH
Q 009477 93 GVRALILSPTRDLALQTLKFTKELG-------RYTDLRISLLVGGDSMESQFEELA---------QNPDIIIATPGRLMH 156 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~-------~~~~l~~~~~~gg~~~~~~~~~~~---------~~~~IiV~Tp~~l~~ 156 (534)
+.++||.+|++.-+..+++.+.+.. ...++.+..++|+....++...+. +...|+|+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 4579999999999999998887522 235788999999998877765543 24579999942
Q ss_pred HHHhcCCCCCCCeeEEEE
Q 009477 157 HLSEVEDMSLKSVEYVVF 174 (534)
Q Consensus 157 ~l~~~~~~~l~~~~~iVi 174 (534)
+. ..+++.++.+||-
T Consensus 379 -ae--~GidIp~v~~VId 393 (773)
T 2xau_A 379 -AE--TSLTIDGIVYVVD 393 (773)
T ss_dssp -HH--HTCCCTTEEEEEE
T ss_pred -HH--hCcCcCCeEEEEe
Confidence 22 2588889988774
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.78 E-value=8.5 Score=45.18 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCCcEEEEE
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~q~ll~S 206 (534)
+.+-+++|+|||=.-+|..-...+.+.++....++-++..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 44667899999977777666667777777665555444433
No 341
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.47 E-value=2.8 Score=39.06 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=31.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
...+|+++.-.+...+.+.+.- +..+..++... ....+.+++.|++|+|||...-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 4568888877777776665320 00111000000 0123569999999999998543
No 342
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=65.43 E-value=5.5 Score=37.97 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~P 101 (534)
.|.-+++.|++|+|||......+.. +... .|.+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~---~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ-WGTA---MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH-HHHT---SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHH---cCCeEEEEeC
Confidence 4667899999999999865433222 2211 2545777654
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=65.37 E-value=1.3 Score=42.16 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=28.6
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHHh--cCCcEEEEcCCCChHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLIL--SGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~ai~~il--~~~d~i~~a~TGsGKT~~~ 77 (534)
..-+|+++|--+.+.+.|.+.= .+|+.. +++..+- -.+.+++.||+|+|||...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3457888887777777776421 123222 2333221 1345999999999999853
No 344
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=64.84 E-value=3.4 Score=37.21 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=16.8
Q ss_pred HHhcCCcEEEEcCCCChHHHHH
Q 009477 56 LILSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 56 ~il~~~d~i~~a~TGsGKT~~~ 77 (534)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888999999999999854
No 345
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=64.65 E-value=4.1 Score=36.10 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=24.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (534)
+++.|++|||||.-.. ++... +.+++++......-..+.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~----~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD----APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS----CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHH-----HHHhc----CCCeEEEecCCCCCHHHHHHHH
Confidence 6889999999998554 33332 3457888875543333333333
No 346
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.63 E-value=6.8 Score=36.06 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=17.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQR 84 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~ 84 (534)
++++.++.|+|||...+-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999866444433
No 347
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.44 E-value=3.7 Score=40.36 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|+||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998654
No 348
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=64.31 E-value=3.4 Score=36.87 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|.-+++.|+.|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 349
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.18 E-value=3.2 Score=41.45 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~ 77 (534)
..|..+++.|+||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999853
No 350
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.13 E-value=13 Score=44.54 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=53.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~ 140 (534)
+-+.+.||.|||||...+-.+.+. .. .|..++++.+..+|.... ++.++-. +.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~-~~----~g~~~~~i~~e~~~~~~~---~~~~Gv~--~~----------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAA-QR----EGKTCAFIDAEHALDPIY---ARKLGVD--ID----------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-HH----TTCCEEEECTTSCCCHHH---HHHTTCC--GG-----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-Hh----cCCeEEEEecCCCCCHHH---HHHcCCC--HH-----------------
Confidence 558999999999999766444332 22 366799999988777663 5555411 11
Q ss_pred hCCCCEEEECchHH---HHHHHhcCCCCCCCeeEEEEcCCCccc
Q 009477 141 AQNPDIIIATPGRL---MHHLSEVEDMSLKSVEYVVFDEADCLF 181 (534)
Q Consensus 141 ~~~~~IiV~Tp~~l---~~~l~~~~~~~l~~~~~iViDEah~l~ 181 (534)
+++|.-|+.- +..++. .+.-..+++||+|..-.+.
T Consensus 1485 ----~l~~~~p~~~e~~l~~~~~--~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 ----NLLCSQPDTGEQALEICDA--LARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ----GCEEECCSSHHHHHHHHHH--HHHHTCCSEEEESCSTTCC
T ss_pred ----HeEEeCCCcHHHHHHHHHH--HHHcCCCCEEEEccHHhCC
Confidence 2555555332 222111 0112357899999998766
No 351
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.07 E-value=3.5 Score=37.76 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=16.5
Q ss_pred HhcCCcEEEEcCCCChHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~ 77 (534)
+-.|+-+++.||.|||||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446777999999999999854
No 352
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=63.68 E-value=12 Score=38.89 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----cccc-C-CCCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AARG-I-DIPL 334 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~a~G-l-Dip~ 334 (534)
+.++||.++|+.-+..+.+.+... ++.+..++|+.+...+...+. ...+|+|+|.- +..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888777664 899999999986554332221 13679999932 2222 3 6777
Q ss_pred CCEEEEc
Q 009477 335 LDNVINW 341 (534)
Q Consensus 335 v~~VI~~ 341 (534)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8888743
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=63.57 E-value=3.7 Score=41.33 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-++++||||||||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36889999999998654
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.53 E-value=3.8 Score=40.62 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~ 77 (534)
.+.-+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456889999999999853
No 355
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.49 E-value=3.1 Score=36.26 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|.-+.+.|++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567899999999998544
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.39 E-value=2.6 Score=36.93 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|..+++.|+.|||||+..-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999998654
No 357
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=63.19 E-value=3.2 Score=39.84 Aligned_cols=18 Identities=17% Similarity=0.064 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 358
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=62.95 E-value=10 Score=43.98 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=40.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcC-------CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGVRALILSPTRDLALQTLKFTKE 115 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~-------~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (534)
..++.|..|||||.+..--++..+.... .-.-.++|+|+=|+.-|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999988777777765321 11124699999999999988886654
No 359
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=62.76 E-value=3.3 Score=35.95 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|+.|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998643
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.00 E-value=4.6 Score=35.51 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l 78 (534)
..+.-+++.|+.|||||+..-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678999999999999654
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=61.91 E-value=3.5 Score=36.08 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-+.+.|+.|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 362
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=61.81 E-value=7.4 Score=37.53 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+.+.|++|||||+..-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457789999999998543
No 363
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.66 E-value=12 Score=39.02 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=28.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (534)
.|.-+++.|++|+|||......+-. +.. .|.+++++++... ..|+...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~-~~~----~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN-ACA----NKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH-HHT----TTCCEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH-HHh----CCCCEEEEEEeCC-HHHHHHHH
Confidence 3566889999999999855433222 221 2556777776532 23444433
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=61.58 E-value=21 Score=41.85 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=25.1
Q ss_pred CCCeeEEEEcCCCccccCChHHHHHHHHHhcCCCC
Q 009477 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (534)
Q Consensus 166 l~~~~~iViDEah~l~~~~~~~~~~~i~~~~~~~~ 200 (534)
+++-+++|+||+=.-+|..-...+.+.+..+..++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 56778999999988777766666666666554444
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.48 E-value=3.4 Score=36.27 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|++|||||+..-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998654
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=61.11 E-value=3.4 Score=36.29 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|..|||||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4558899999999998654
No 367
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=60.91 E-value=44 Score=36.80 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=52.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhC----CCC--EEEECchHHHHHHHhcCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ----NPD--IIIATPGRLMHHLSEVEDMS 165 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~----~~~--IiV~Tp~~l~~~l~~~~~~~ 165 (534)
.|.++||.+..+..+..+.+.+... ++.+..+.|+.+..+....+.. +.. +++.+....- ..++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg------~GlN 640 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG------LGIN 640 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT------TTCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc------CCCC
Confidence 4678999999998877777766654 5888899999887776655542 222 3444433332 4688
Q ss_pred CCCeeEEEEcCCC
Q 009477 166 LKSVEYVVFDEAD 178 (534)
Q Consensus 166 l~~~~~iViDEah 178 (534)
+...+.||+=+.+
T Consensus 641 L~~a~~VI~~D~~ 653 (800)
T 3mwy_W 641 LMTADTVVIFDSD 653 (800)
T ss_dssp CTTCCEEEESSCC
T ss_pred ccccceEEEecCC
Confidence 8888888875554
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.56 E-value=4.2 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-.++.|++|||||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999853
No 369
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=60.25 E-value=4.1 Score=36.36 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.-+++.|+.|||||+..-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998654
No 370
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.24 E-value=4.1 Score=35.83 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|++|||||+..-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999998544
No 371
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=59.97 E-value=4.4 Score=34.86 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+++++.|..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999999654
No 372
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=59.92 E-value=8.7 Score=37.86 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=29.4
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 53 ai~~il~------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.+..++. |+-+++.|++|||||...+..+..... .|.+++++.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECC
Confidence 4555555 456899999999999876544433322 24567887754
No 373
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=59.89 E-value=24 Score=30.03 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCcccccC
Q 009477 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (534)
Q Consensus 251 k~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv~a~Gl 330 (534)
+....++++.+....+.+++|.|.+...++.+-+.|=...-....=|+-..... .....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------RGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------TTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------CCCCCEEEeCCCCC---
Confidence 567778899888889999999999999999999999765444443343211100 13567999985321
Q ss_pred CCCCCCEEEEcCCC
Q 009477 331 DIPLLDNVINWDFP 344 (534)
Q Consensus 331 Dip~v~~VI~~~~p 344 (534)
.-+.-+++||.+.-
T Consensus 92 ~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 SSSRRDILISLRTS 105 (150)
T ss_dssp CCSCCSEEEECCSS
T ss_pred CCCcCCEEEECCCC
Confidence 11235689998853
No 374
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=59.85 E-value=4.1 Score=35.75 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|+.|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999999654
No 375
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=59.84 E-value=8.9 Score=37.92 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
|+-+++.|++|+|||...+-.+.+... .|.+++++....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCC
Confidence 456899999999999876644443322 245688887643
No 376
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.78 E-value=11 Score=36.22 Aligned_cols=82 Identities=13% Similarity=0.012 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcC--CCCeEEEEEcChhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc
Q 009477 253 AALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (534)
Q Consensus 253 ~~L~~~l~~~~~--~~~~~IVF~~t~~~~e~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv 325 (534)
..++-++..... .+.++||.++|+.-+..++..+... ++.+..++|+.+.... .....+|+|+|.-
T Consensus 147 a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~ 219 (300)
T 3fmo_B 147 AFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPG 219 (300)
T ss_dssp HHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHH
T ss_pred HHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHH
Confidence 344455554332 2347999999999999988888764 3556666665543221 1345689999943
Q ss_pred c-----c--ccCCCCCCCEEEEc
Q 009477 326 A-----A--RGIDIPLLDNVINW 341 (534)
Q Consensus 326 ~-----a--~GlDip~v~~VI~~ 341 (534)
- . ..+++..+.++|.-
T Consensus 220 ~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 220 TVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp HHHHHHTTTCCCCGGGCSEEEET
T ss_pred HHHHHHHhcCCCChhhceEEEEe
Confidence 2 1 35667777777743
No 377
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=59.54 E-value=4 Score=36.41 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 009477 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 46 ~~~~Q~~ai~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
.+..++..+ ....|.-+++.|+.|||||...-
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHH
Confidence 445555433 22346668899999999998643
No 378
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=59.41 E-value=33 Score=26.68 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCeEEEEE------cChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 009477 257 YMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (534)
Q Consensus 257 ~~l~~~~~~~~~~IVF~------~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iL 320 (534)
..+.+.+. ..+++||. +++..|..+...|...++....+.-+.+...+....+.+....+..+
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 33344333 34688887 57899999999999999887777666666666555444433333333
No 379
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=59.29 E-value=4.5 Score=40.16 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|++|+|||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998654
No 380
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.17 E-value=4.8 Score=41.88 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=26.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
.|.-+++.|++|+|||...+-.+.+.... .|.++++++-.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEecc
Confidence 34568999999999998665433333221 25668888764
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.16 E-value=4.3 Score=36.08 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.-+++.|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999999643
No 382
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=58.76 E-value=5.2 Score=38.22 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|++|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999998654
No 383
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.66 E-value=34 Score=33.72 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=53.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-----ccc-ccCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPL 334 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-----v~a-~GlDip~ 334 (534)
.+.++||.++++..+..+++.+... +..+..++|+.+.... ......+..+|+|+|. .+. ..++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999999888888764 5667777777654433 4556667889999993 232 3356677
Q ss_pred CCEEEEcC
Q 009477 335 LDNVINWD 342 (534)
Q Consensus 335 v~~VI~~~ 342 (534)
+++||.-.
T Consensus 184 ~~~vViDE 191 (414)
T 3eiq_A 184 IKMFVLDE 191 (414)
T ss_dssp CCEEEECS
T ss_pred CcEEEEEC
Confidence 88877533
No 384
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=58.64 E-value=38 Score=26.69 Aligned_cols=55 Identities=4% Similarity=-0.034 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCeEEEEEc------ChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHH
Q 009477 256 LYMIREHISSDQQTLIFVS------TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311 (534)
Q Consensus 256 ~~~l~~~~~~~~~~IVF~~------t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~ 311 (534)
...+++.+ ...+++||.. .+..+..+...|...|+....++-..+...++...+.
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 34444443 3568999987 5999999999999999887766655555555554443
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.30 E-value=61 Score=31.59 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|.+|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998654
No 386
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.30 E-value=4.5 Score=41.50 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.||+|+|||...-
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999998654
No 387
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=58.27 E-value=4.5 Score=37.59 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=32.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc--CCcEEEEcCCCChHHHHH
Q 009477 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS--GADVVAMARTGSGKTAAF 77 (534)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il~--~~d~i~~a~TGsGKT~~~ 77 (534)
...-+|++++-.+.....+++.-.. . -...++..+-- .+.+++.||+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456899987777776666543110 0 01123332211 245999999999999854
No 388
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=58.25 E-value=24 Score=38.62 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCcCCCCC-CHHHHHHHHHCCCCCCcH----HHHHHHHHHhc-C--CcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESLNL-SPNVFRAIKRKGYKVPTP----IQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l~l-~~~l~~~l~~~g~~~~~~----~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l 78 (534)
-++|..+++ ++.++.....+....+-| +=..|+..++. + +.+|+.|..|+|||.+.=
T Consensus 126 vNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred ecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 357888774 677777766544333322 33456655544 3 449999999999998754
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.21 E-value=7.8 Score=37.33 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+.+.|++|||||+..-
T Consensus 102 vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 37789999999998543
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.12 E-value=7.1 Score=36.49 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|+.+++.|++|||||.+.-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48899999999999999654
No 391
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=58.09 E-value=12 Score=40.37 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=45.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEc--------CCCHHHHHHH---H-h-CCCCEEEECchHHHHHH
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEE---L-A-QNPDIIIATPGRLMHHL 158 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~~~~~~---~-~-~~~~IiV~Tp~~l~~~l 158 (534)
.+.++||.++++.-+..+.+.++..+...++++..++| +.+..++... . . +..+|+|+|.- +
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v-----~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV-----A 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES-----S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech-----h
Confidence 45679999999999999999998876544577777765 4444333322 2 2 46789999932 2
Q ss_pred HhcCCCCCCCeeEEEEcCC
Q 009477 159 SEVEDMSLKSVEYVVFDEA 177 (534)
Q Consensus 159 ~~~~~~~l~~~~~iViDEa 177 (534)
. ..+++.++++||.-+.
T Consensus 472 ~--~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 D--EGIDIAQCNLVILYEY 488 (696)
T ss_dssp C--CC---CCCSEEEEESC
T ss_pred h--cCCcCccCCEEEEeCC
Confidence 2 3578888998886443
No 392
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=58.08 E-value=5.1 Score=34.73 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999998654
No 393
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=58.06 E-value=6.9 Score=37.97 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=23.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 009477 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Pt 102 (534)
+++.|+.|||||+..- .+.... .+.++.||.|+
T Consensus 7 ~~i~G~~GaGKTTll~-----~l~~~~--~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLR-----HILNEQ--HGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHH-----HHHHSC--CCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHH-----HHHhhc--CCCcEEEEEec
Confidence 6789999999998532 232221 36678888885
No 394
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=57.83 E-value=4.4 Score=40.24 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|+||||||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47799999999998653
No 395
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=57.70 E-value=12 Score=29.38 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.6
Q ss_pred hcCCCCeEEEEEcChhhHHHHHHHHHHcCCC-ceeecCCC
Q 009477 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDM 300 (534)
Q Consensus 262 ~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~-~~~l~g~~ 300 (534)
.+.++.+++|+|.+-..+...+..|...|+. +..+.|++
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4567788999999988899999999999996 66777763
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=57.62 E-value=4.8 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998654
No 397
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=57.42 E-value=11 Score=40.50 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=49.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeE
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~ 171 (534)
.+.++||.+||++-+.++++.+++. ++.+..++|+....+. ..++.+|+|+|. .+.. .++++ +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcE
Confidence 3568999999999999988887764 5889999998876542 235668999994 2322 35664 777
Q ss_pred EE
Q 009477 172 VV 173 (534)
Q Consensus 172 iV 173 (534)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 398
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.41 E-value=3.9 Score=37.46 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=12.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|.-+.+.||+|||||...-
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCCEEEEECSCC----CHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999998543
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=57.15 E-value=5.7 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.|++|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999999654
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.96 E-value=5.1 Score=34.46 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+.+++.|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 401
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.84 E-value=5 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|+.|||||+..-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999654
No 402
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=56.83 E-value=7.9 Score=37.97 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=30.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 009477 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDL-ALQTLKFTKEL 116 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l~p~l~~l~~~~-~~~g~~~Lil~PtreL-a~Q~~~~~~~~ 116 (534)
.-+++.|++|||||...+-.+........ ...+.+++++.-...+ ..++...++.+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 34889999999999866533332211110 0124568888765421 23333444443
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=56.81 E-value=5.4 Score=35.15 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.-+++.|++|||||...-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35668999999999998654
No 404
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.81 E-value=17 Score=34.58 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~ 167 (534)
.+.++||.+++++-+..+.+.++ .+..++|+....+....+ .+..+|+|+|. .+. ..+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCcc
Confidence 45679999999998877655443 466778877665544333 34688999994 333 468888
Q ss_pred CeeEEEEcCC
Q 009477 168 SVEYVVFDEA 177 (534)
Q Consensus 168 ~~~~iViDEa 177 (534)
++++||.-..
T Consensus 284 ~~~~Vi~~~~ 293 (337)
T 2z0m_A 284 LVEKVINFDA 293 (337)
T ss_dssp CBSEEEESSC
T ss_pred CCCEEEEecC
Confidence 9998887443
No 405
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=56.78 E-value=38 Score=26.86 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=35.3
Q ss_pred CCCeEEEEE------cChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHH
Q 009477 265 SDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (534)
Q Consensus 265 ~~~~~IVF~------~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~ 310 (534)
...+++||. +++..|..+...|...|+....+.-+.+...++...+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 356899998 6899999999999999988777665556666555433
No 406
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=56.72 E-value=5.1 Score=39.59 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
.+.+++.|++|+|||...-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=56.59 E-value=5.1 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-.++.|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999854
No 408
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=56.58 E-value=17 Score=34.30 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH---hC--
Q 009477 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL---AQ-- 142 (534)
Q Consensus 68 ~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~---~~-- 142 (534)
...+||..+. .-++..+.. .+.++||.+.++..+..+...+... .++.+..++|+.+..+....+ ..
T Consensus 92 ~~~s~K~~~L-~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 92 VRRSGKMIRT-MEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNP 163 (271)
T ss_dssp STTCHHHHHH-HHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCT
T ss_pred cccCHHHHHH-HHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 3467787643 333333332 3567999999999888888777662 146777888887765543322 22
Q ss_pred CCC-EEEECchHHHHHHHhcCCCCCCCeeEEEEcCCC
Q 009477 143 NPD-IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (534)
Q Consensus 143 ~~~-IiV~Tp~~l~~~l~~~~~~~l~~~~~iViDEah 178 (534)
... ++++| ...- ..+++...+.||+=+..
T Consensus 164 ~~~v~L~st-~~~g------~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 164 SVKFIVLSV-KAGG------FGINLTSANRVIHFDRW 193 (271)
T ss_dssp TCCEEEEEC-CTTC------CCCCCTTCSEEEECSCC
T ss_pred CCCEEEEeh-hhhc------CCcCcccCCEEEEECCC
Confidence 345 45555 3221 35778888877765544
No 409
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=56.53 E-value=29 Score=25.69 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 264 ~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
.++.+++|+|.+-..+...+..|...|+....+.|++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCH
Confidence 5678899999998889999999999998744433654
No 410
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.43 E-value=50 Score=32.13 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----c-cccCCCCC
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----A-ARGIDIPL 334 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~-a~GlDip~ 334 (534)
.+.++||.++++.-++.+++.+... ++.+..++|+.+.......+. ..+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888877653 677888999988766554433 4679999932 1 23455667
Q ss_pred CCEEEEcC
Q 009477 335 LDNVINWD 342 (534)
Q Consensus 335 v~~VI~~~ 342 (534)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 88877533
No 411
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=56.34 E-value=4.5 Score=38.71 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-++++|++|||||+..-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998654
No 412
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.04 E-value=2.8 Score=39.34 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
.+.+++.|++|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998654
No 413
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=56.01 E-value=5.3 Score=35.98 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999654
No 414
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=55.87 E-value=12 Score=37.14 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 009477 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (534)
Q Consensus 53 ai~~il~------~~d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~Ptr 103 (534)
.+..++. |.-+++.|++|+|||...+-.+.+. .. .|.+++++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~-~~----~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA-QK----AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH-HH----TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHH-HH----CCCeEEEEECCC
Confidence 4555555 3558899999999998655433332 22 245688887654
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.79 E-value=5.3 Score=36.19 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+.+.|++|||||+..-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998654
No 416
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=55.75 E-value=5.2 Score=36.46 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|++|||||...-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999999643
No 417
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.61 E-value=6 Score=35.79 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+..+++.|+.|||||+..-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 418
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=55.56 E-value=4.9 Score=35.84 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.-+++.|+.|||||+..-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35568899999999998644
No 419
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=55.49 E-value=5.2 Score=34.81 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.|.-+++.|+.|||||.+.-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998543
No 420
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=55.38 E-value=15 Score=39.33 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=49.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.++||.|+|+.-+..+++.++.. ++++..++|............+..+|+|+|. .+. ..+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~--rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGG--TTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHH--cCcccC-ceEE
Confidence 457999999999999998888875 4788888886443332233346789999995 222 356774 7766
Q ss_pred E
Q 009477 173 V 173 (534)
Q Consensus 173 V 173 (534)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 421
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=55.35 E-value=3 Score=37.39 Aligned_cols=20 Identities=25% Similarity=0.026 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.-+.+.|++|||||+..-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557899999999998543
No 422
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=55.31 E-value=5.1 Score=35.88 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 009477 60 GADVVAMARTGSGKTAAF 77 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~ 77 (534)
+.-+.+.|++|||||+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 444778999999999854
No 423
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=55.25 E-value=11 Score=43.35 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=52.6
Q ss_pred HhcCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-----CcccccCC-CCC
Q 009477 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----DVAARGID-IPL 334 (534)
Q Consensus 261 ~~~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~T-----dv~a~GlD-ip~ 334 (534)
..+..+.++||.++|+.-+...+..|....-.+..++|+.+ .+++.+|+|+| +++.+|-. +.+
T Consensus 222 ~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~ 290 (1108)
T 3l9o_A 222 QSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMRE 290 (1108)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHH
T ss_pred HHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccccc
Confidence 33456789999999999999999999887668888999876 34678899999 44544433 556
Q ss_pred CCEEEE
Q 009477 335 LDNVIN 340 (534)
Q Consensus 335 v~~VI~ 340 (534)
+.+||.
T Consensus 291 l~lVVI 296 (1108)
T 3l9o_A 291 VAWVIF 296 (1108)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 777774
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.70 E-value=5.8 Score=35.28 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+++.|+.|||||+..-
T Consensus 17 ~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 425
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=54.57 E-value=5.8 Score=33.90 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 426
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=54.54 E-value=4.8 Score=36.16 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 009477 60 GADVVAMARTGSGKTAAF 77 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~ 77 (534)
|.-+.+.|++|||||+..
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778999999999843
No 427
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=54.53 E-value=6.5 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.|+.|||||...-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999999654
No 428
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=54.44 E-value=7 Score=30.90 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.6
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
++++.+++|+|.+-..+...+..|...|++...+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 46778999999998889999999999999888777763
No 429
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=54.31 E-value=5.4 Score=39.66 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999853
No 430
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=54.25 E-value=31 Score=37.98 Aligned_cols=82 Identities=11% Similarity=-0.056 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcChhhHHHHHHHHH----HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc--
Q 009477 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-- 325 (534)
Q Consensus 252 ~~~L~~~l~~~~~~~~~~IVF~~t~~~~e~l~~~L~----~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-- 325 (534)
...++-++...+ .+.+++|.++|+.-|...++.+. ..|+.+..++|+++...|.... .++|+|+|+-
T Consensus 102 laf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl 174 (853)
T 2fsf_A 102 LTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEY 174 (853)
T ss_dssp HHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHH
T ss_pred HHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchh
Confidence 334444443332 46789999999998877666554 4589999999999976554332 3789999952
Q ss_pred ----cccc-------CCCCCCCEEEE
Q 009477 326 ----AARG-------IDIPLLDNVIN 340 (534)
Q Consensus 326 ----~a~G-------lDip~v~~VI~ 340 (534)
+..+ ++...+.++|.
T Consensus 175 ~fDyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 175 GFDYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred hHHHHHhhhhccHhHhcccCCcEEEE
Confidence 2233 45567777663
No 431
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.08 E-value=5.9 Score=35.20 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.|+.|||||+..-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999999654
No 432
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=54.02 E-value=5.1 Score=39.01 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+.+.|++|+|||....
T Consensus 108 I~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998654
No 433
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=53.98 E-value=20 Score=39.49 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-----cccc-C-CCCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AARG-I-DIPL 334 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-----~a~G-l-Dip~ 334 (534)
+.++||.++|+..+..+...+... ++.+..++|+.+...+...+. +..+|+|+|.- +.++ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 789999999999988887777664 899999999986555432221 25789999932 2222 3 5667
Q ss_pred CCEEEEc
Q 009477 335 LDNVINW 341 (534)
Q Consensus 335 v~~VI~~ 341 (534)
+++||.-
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7888743
No 434
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=53.88 E-value=6 Score=35.29 Aligned_cols=16 Identities=38% Similarity=0.268 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+.+.|+.|||||++.-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 435
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.85 E-value=5.9 Score=35.24 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+.+.|+.|||||+..-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47889999999998543
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=53.56 E-value=6.4 Score=36.03 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+..+++.|++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4569999999999998654
No 437
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.55 E-value=6.1 Score=34.93 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||+..-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37899999999998543
No 438
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=53.51 E-value=5.9 Score=37.40 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=32.8
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHH
Q 009477 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~il--~~~d~i~~a~TGsGKT~~~l 78 (534)
..-+|+++.-.+.....+...-.. . -...++..+- -.+.+++.||+|+|||...-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 456788887777777766543110 0 0112233221 12459999999999998543
No 439
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=53.37 E-value=45 Score=36.05 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=54.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcc--------------------------------CCCeEEEEEcCCCHHHHHHH
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRY--------------------------------TDLRISLLVGGDSMESQFEE 139 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~--------------------------------~~l~~~~~~gg~~~~~~~~~ 139 (534)
.+.++||.+|++.-+..+++.+...... ....+..++||.+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3567999999999999999888764321 01348889999887766543
Q ss_pred Hh----CCCCEEEECchHHHHHHHhcCCCCCCCeeEEEEc
Q 009477 140 LA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (534)
Q Consensus 140 ~~----~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~iViD 175 (534)
.. +..+|+|+|.- +. ..+++..+.+||-+
T Consensus 331 ~~~f~~g~~~vlvaT~~-----l~--~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPT-----LA--AGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEECGG-----GG--GSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEChH-----Hh--cccCCCceEEEEeC
Confidence 33 57889999942 22 35788888876643
No 440
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=53.22 E-value=6.8 Score=34.96 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.-+++.|+.|||||+..-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35668999999999998644
No 441
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=53.21 E-value=13 Score=42.18 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=42.8
Q ss_pred CCCcCCCC-C-CHHHHHHHHHCCCCCCcH----HHHHHHHHHhc-C--CcEEEEcCCCChHHHHHHHHHHHHhh
Q 009477 22 SGGFESLN-L-SPNVFRAIKRKGYKVPTP----IQRKTMPLILS-G--ADVVAMARTGSGKTAAFLVPMLQRLN 86 (534)
Q Consensus 22 ~~~f~~l~-l-~~~l~~~l~~~g~~~~~~----~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l~p~l~~l~ 86 (534)
-++|..++ + ++..++.........+-| +=..|+..++. + +.+|+.|.+|||||.+.=. +++.+.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 46788885 4 888888887665544333 44556665543 3 4599999999999998643 334443
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.79 E-value=6.4 Score=34.43 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 443
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.71 E-value=6.1 Score=36.51 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.||.|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999983
No 444
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=52.57 E-value=21 Score=28.95 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCC-CeEEEEE-cChhhHHHHHHHHHHcCCCceeecCCCC
Q 009477 255 LLYMIREHISSD-QQTLIFV-STKHHVEFLNVLFREEGLEPSVCYGDMD 301 (534)
Q Consensus 255 L~~~l~~~~~~~-~~~IVF~-~t~~~~e~l~~~L~~~~~~~~~l~g~~~ 301 (534)
+...+.. +.++ .+++|+| .+-..+...+..|...|+++..+.|++.
T Consensus 78 ~~~~~~~-~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 78 IYLQAAE-LALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHH-HHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHH-hccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3333433 2455 7899999 5777788999999999998888888754
No 445
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=52.52 E-value=9.4 Score=30.25 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=33.1
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
+.++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 46678999999998889999999999999888888874
No 446
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.50 E-value=6.3 Score=35.62 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
|.-+.+.|++|||||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998544
No 447
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=52.49 E-value=11 Score=37.39 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+.+.|++|||||+..-
T Consensus 160 i~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEEcCCCChHHHHHH
Confidence 7789999999998543
No 448
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.25 E-value=7.3 Score=34.79 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~l 78 (534)
.+.-+++.|+.|||||+..-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999998654
No 449
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.09 E-value=8.5 Score=37.52 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999998543
No 450
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.97 E-value=8.7 Score=33.70 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
.+.+.|+.|||||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 451
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.67 E-value=17 Score=32.60 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=45.2
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHc--------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC-----cccc-cCC
Q 009477 266 DQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAAR-GID 331 (534)
Q Consensus 266 ~~~~IVF~~t~~~~e~l~~~L~~~--------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td-----v~a~-GlD 331 (534)
+.++||.++|+..++.+++.+... ++.+..++|+.+...... .+ .+..+|+|+|. .+.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999999888877653 567778888765433211 11 23567999993 2222 234
Q ss_pred CCCCCEEEE
Q 009477 332 IPLLDNVIN 340 (534)
Q Consensus 332 ip~v~~VI~ 340 (534)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 455555553
No 452
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=51.57 E-value=26 Score=33.89 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHH
Q 009477 63 VVAMARTGSGKTAAF 77 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~ 77 (534)
+-+.|++|||||+..
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 668999999999854
No 453
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=51.44 E-value=7 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998654
No 454
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=51.38 E-value=6.8 Score=35.25 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 455
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=51.06 E-value=9.3 Score=29.68 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=32.5
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
++++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 35678999999998889999999999999888887763
No 456
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=50.98 E-value=6.9 Score=36.62 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
.-+++.|.+|||||...-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 358899999999998644
No 457
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=50.88 E-value=9.9 Score=35.20 Aligned_cols=33 Identities=24% Similarity=0.121 Sum_probs=21.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
-+++.+..|+|||....-.+. .+. .|.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~-~l~-----~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGR-YLE-----DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHT-----TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHH-HHH-----CCCeEEEEe
Confidence 378899999999986552222 221 255676665
No 458
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.85 E-value=8.2 Score=35.68 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|+.|||||+..-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999998654
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=50.81 E-value=9.2 Score=34.51 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+++.||+||||++..-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998554
No 460
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.41 E-value=7.2 Score=34.46 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+.+.|++|||||.+.-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37789999999998654
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=50.29 E-value=8.1 Score=36.46 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.6
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHH
Q 009477 57 ILSGADVVAMARTGSGKTAAFLVPM 81 (534)
Q Consensus 57 il~~~d~i~~a~TGsGKT~~~l~p~ 81 (534)
+..|.-+++.|++|||||......+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567779999999999998655443
No 462
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.17 E-value=4.4 Score=39.53 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
...+++.|++|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999998543
No 463
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.13 E-value=9.5 Score=39.22 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
..++++.|++|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3579999999999998654
No 464
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.96 E-value=7.4 Score=35.94 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|+.|||||+..-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 465
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=49.94 E-value=9.1 Score=36.93 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 009477 59 SGADVVAMARTGSGKTAAF 77 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~~ 77 (534)
.|.-+.+.||+|||||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4677889999999999843
No 466
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.93 E-value=5.6 Score=34.54 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=11.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+.-+++.|..|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999999654
No 467
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=49.93 E-value=11 Score=33.36 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=34.4
Q ss_pred CCCeEEEEEcChhhHHH-HHHHHHHc---CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeC
Q 009477 265 SDQQTLIFVSTKHHVEF-LNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~-l~~~L~~~---~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Td 324 (534)
.+.++||+++++..++. +.+.+... ++.+..++|+.+...+...+. +..+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 36799999999988877 65555443 677888887654332211111 1467999983
No 468
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=49.81 E-value=7.2 Score=36.05 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.|+.|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999984
No 469
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=49.78 E-value=19 Score=28.27 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=32.7
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHcCCC-ceeecCCCC
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~-~~~l~g~~~ 301 (534)
++++.+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 55 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 567889999999988899999999999996 667777743
No 470
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=49.74 E-value=8.2 Score=34.84 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
+..+++.|++|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998654
No 471
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=49.68 E-value=9.4 Score=39.10 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=46.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHhCCCCEEEECchHHHHHHHhcCCCCCCCeeEE
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~l~~~~~i 172 (534)
+.++||.+|++.-+..+++.++.. ++.+..++|............+..+|+|+|.- +. ..+++.+ .+|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v-----~~--~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTDI-----SE--MGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESSC-----C-----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECCh-----HH--hCeecCC-CEE
Confidence 457999999999999988888775 57888888864432222222356889999942 22 2466766 555
Q ss_pred E
Q 009477 173 V 173 (534)
Q Consensus 173 V 173 (534)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=49.68 E-value=8.7 Score=34.86 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 009477 58 LSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 58 l~~~d~i~~a~TGsGKT~~~l 78 (534)
+.|.-+++.|+.|||||...-
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHH
Confidence 456778999999999998643
No 473
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=49.49 E-value=9.3 Score=29.85 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.4
Q ss_pred cCCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCC
Q 009477 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (534)
Q Consensus 263 ~~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~ 300 (534)
++++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 35678899999998889999999999999888887763
No 474
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=49.37 E-value=47 Score=36.61 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=50.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHHH----HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeCc-c-----c-------
Q 009477 265 SDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----A------- 327 (534)
Q Consensus 265 ~~~~~IVF~~t~~~~e~l~~~L~----~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~iLI~Tdv-~-----a------- 327 (534)
.+.+++|.++|+.-|...++.+. ..|+.+.+++|+++...|.... ..+|+++|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 36789999999998887766554 4589999999999987665432 3689999951 1 1
Q ss_pred ccCCCCCCCEEE
Q 009477 328 RGIDIPLLDNVI 339 (534)
Q Consensus 328 ~GlDip~v~~VI 339 (534)
..++...+.++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 235667777766
No 475
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=49.19 E-value=22 Score=40.21 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=38.1
Q ss_pred CCCcCCCCC-CHHHHHHHHHCCCCCCcH----HHHHHHHHHhc-C--CcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESLNL-SPNVFRAIKRKGYKVPTP----IQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l~l-~~~l~~~l~~~g~~~~~~----~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l 78 (534)
.++|..+++ ++.++..........+-| +=..|+..++. + +.+|+.|..|+|||.+.=
T Consensus 126 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 190 (1010)
T 1g8x_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (1010)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHH
T ss_pred ecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHH
Confidence 367888874 677777776554444333 33456655543 3 449999999999998754
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=49.01 E-value=8 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-.++.|++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999854
No 477
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=48.99 E-value=7.8 Score=35.25 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.||.|||||+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999984
No 478
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=48.77 E-value=54 Score=36.01 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCCcCCCCC-CHHHHHHHHHCCCCCCc----HHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESLNL-SPNVFRAIKRKGYKVPT----PIQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l~l-~~~l~~~l~~~g~~~~~----~~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l 78 (534)
-++|..+++ ++.+++.........+- .+=..|+..++. + +.+|+.|..|+|||.+.=
T Consensus 110 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 174 (795)
T 1w7j_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAK 174 (795)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred ecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHH
Confidence 367888764 56777766554433322 344456665544 3 459999999999998754
No 479
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=48.77 E-value=7.9 Score=35.18 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 480
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.76 E-value=7 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-+.+.|++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3668899999999854
No 481
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.64 E-value=12 Score=33.24 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCeeEEEEcCCCcc--ccCChHHHHHHHHHhcCCCCcEEEEEeeCC
Q 009477 166 LKSVEYVVFDEADCL--FGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (534)
Q Consensus 166 l~~~~~iViDEah~l--~~~~~~~~~~~i~~~~~~~~q~ll~SAT~~ 210 (534)
..+.+++|+||+..+ .+..|...+.+++.. ...+++.+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 566789999998777 344477777777663 233566677753
No 482
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=48.56 E-value=17 Score=39.24 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=37.0
Q ss_pred CCCcCCCCC-CHHHHHHHHHCCCCC--C--cHHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESLNL-SPNVFRAIKRKGYKV--P--TPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l~l-~~~l~~~l~~~g~~~--~--~~~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l 78 (534)
-++|..+++ ++..++......... | +.+=..|+..++. + +.+|+.|..|+|||.+.=
T Consensus 48 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 112 (697)
T 1lkx_A 48 TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASK 112 (697)
T ss_dssp ECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred EcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHH
Confidence 367888875 677777765443322 2 2344456665543 3 449999999999998754
No 483
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=48.43 E-value=23 Score=40.10 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=56.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHH---HHhCC---CCEEEECchHHHHHHHhcCCCC
Q 009477 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELAQN---PDIIIATPGRLMHHLSEVEDMS 165 (534)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~~~~~---~~IiV~Tp~~l~~~l~~~~~~~ 165 (534)
.+.+++|.|+++.-+..+.+.++. ..++++..++|+.+..+... .+..+ .+|+|+| ..+- ..++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~~------~GlD 571 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIGS------EGRN 571 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCTT------CSSC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chhh------cCCC
Confidence 456799999999998887777664 23688999999877654433 23333 8999999 3332 5688
Q ss_pred CCCeeEEEEcCCC
Q 009477 166 LKSVEYVVFDEAD 178 (534)
Q Consensus 166 l~~~~~iViDEah 178 (534)
+.++.+||+-+..
T Consensus 572 l~~~~~VI~~d~p 584 (968)
T 3dmq_A 572 FQFASHMVMFDLP 584 (968)
T ss_dssp CTTCCEEECSSCC
T ss_pred cccCcEEEEecCC
Confidence 9999999987766
No 484
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=48.32 E-value=15 Score=28.11 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcChhhHHHHHHHHHHcCCCceeecCCCC
Q 009477 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (534)
Q Consensus 264 ~~~~~~IVF~~t~~~~e~l~~~L~~~~~~~~~l~g~~~ 301 (534)
++ .+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 88999999988889999999999999777777653
No 485
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=48.24 E-value=10 Score=34.52 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 009477 61 ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 61 ~d~i~~a~TGsGKT~~~l 78 (534)
+-+++.||+||||++..-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 447889999999998654
No 486
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=47.76 E-value=21 Score=39.20 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCCcCCC-CC-CHHHHHHHHHCCCCCC----cHHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESL-NL-SPNVFRAIKRKGYKVP----TPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l-~l-~~~l~~~l~~~g~~~~----~~~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l 78 (534)
-++|..+ ++ ++..++....+....+ +.+=..|+..++. + +.+|+.|..|+|||.+.=
T Consensus 93 VNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 158 (784)
T 2v26_A 93 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 158 (784)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred ecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHH
Confidence 3678888 44 7778777765544333 3344456665544 3 459999999999998754
No 487
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.63 E-value=8.7 Score=39.21 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 009477 60 GADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 60 ~~d~i~~a~TGsGKT~~~l 78 (534)
.+++++.||+|+|||...-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3679999999999998653
No 488
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.61 E-value=8.5 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+.+.|+.|||||++.-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 489
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=47.61 E-value=13 Score=39.64 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHH
Q 009477 55 PLILSGADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 55 ~~il~~~d~i~~a~TGsGKT~~~l 78 (534)
..+..+..+++.||+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 445678899999999999998543
No 490
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.37 E-value=8.6 Score=34.25 Aligned_cols=17 Identities=24% Similarity=-0.013 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 009477 62 DVVAMARTGSGKTAAFL 78 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l 78 (534)
-+.+.|+.|||||+..-
T Consensus 24 ~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998543
No 491
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=47.08 E-value=8.2 Score=35.92 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.|+.|||||+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999984
No 492
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.03 E-value=8 Score=36.71 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.||.|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356688999999999984
No 493
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=46.99 E-value=8.6 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 009477 62 DVVAMARTGSGKTAAF 77 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~ 77 (534)
-+++.|+.|||||...
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999853
No 494
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=46.94 E-value=8.4 Score=36.16 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.|+.|||||+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999984
No 495
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=46.91 E-value=8.3 Score=35.39 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHH
Q 009477 59 SGADVVAMARTGSGKTAA 76 (534)
Q Consensus 59 ~~~d~i~~a~TGsGKT~~ 76 (534)
.|.-+.+.|+.|||||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999984
No 496
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=46.79 E-value=4.3 Score=36.35 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHHH
Q 009477 63 VVAMARTGSGKTAAF 77 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~ 77 (534)
+++.|+.|||||+..
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999854
No 497
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=46.71 E-value=9.3 Score=34.04 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.8
Q ss_pred EEEEcCCCChHHHHHH
Q 009477 63 VVAMARTGSGKTAAFL 78 (534)
Q Consensus 63 ~i~~a~TGsGKT~~~l 78 (534)
+.+.|..|||||++.-
T Consensus 15 IgltG~~GSGKSTva~ 30 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999754
No 498
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=46.52 E-value=4.4 Score=41.31 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=22.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 009477 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (534)
Q Consensus 62 d~i~~a~TGsGKT~~~l~p~l~~l~~~~~~~g~~~Lil~ 100 (534)
.+++.|++|+|||......+... .. .|.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l-~~----~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYI-QK----RGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHH-HH----HHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH----cCCeEEEEe
Confidence 58889999999998665433322 22 245576665
No 499
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=46.49 E-value=4.2 Score=41.84 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHH----hCCCCEEEECchHHHHHHHhcCCCCCCC
Q 009477 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (534)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IiV~Tp~~l~~~l~~~~~~~l~~ 168 (534)
+.++||.||++.-+..+++.+... +..+..++|+....+....+ .+..+|+|||. .+. ..+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~--~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc--cCCcccc
Confidence 457999999999988888777665 46777888876554433222 24678999993 222 3577888
Q ss_pred eeEEE
Q 009477 169 VEYVV 173 (534)
Q Consensus 169 ~~~iV 173 (534)
+.+||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 88876
No 500
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.43 E-value=61 Score=36.97 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=36.9
Q ss_pred CCCcCCCCC-CHHHHHHHHHCCCCCCc----HHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHH
Q 009477 22 SGGFESLNL-SPNVFRAIKRKGYKVPT----PIQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (534)
Q Consensus 22 ~~~f~~l~l-~~~l~~~l~~~g~~~~~----~~Q~~ai~~il~-~--~d~i~~a~TGsGKT~~~l 78 (534)
-++|..+++ ++.++..........+- .+=..|+..++. + +.+|+.|..|+|||.+.=
T Consensus 110 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 174 (1080)
T 2dfs_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAK 174 (1080)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred ecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHH
Confidence 367888764 67777766554333322 333456655543 3 459999999999998754
Done!