BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009478
(533 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 180/289 (62%), Gaps = 9/289 (3%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
+ +AF A H Q R SG+PY+ H V A LL +G + ++AAG LHD ++D +S
Sbjct: 53 LICRAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDIS 112
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
+ I FG A LVEGV+KLS+ N +++ +A+ MFLAMA D R +++
Sbjct: 113 IEQIEALFGEETASLVEGVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVV 166
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TLDAL K++R A+ET +IF PLANRLGI +K +LE+L FK+L PD +
Sbjct: 167 KLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSY 226
Query: 411 TELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
++ S +VE E+ + + + L L+D+ I L GR K LY I+ KM +
Sbjct: 227 RKIQSLVVEKRGDRESRLETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKMTSQDKAF 286
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
+EI+DI LR+IVE++ +CY+AL VVH ++ +PG+ KDYI PK N Y
Sbjct: 287 EEIYDIAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRY 335
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 218 bits (556), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 182/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSY 85
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F +A +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 86 TFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 139
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R +KETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 140 VKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQ 199
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA +T+AI K++ + N+S + GR K +YSI+ KM+K+K
Sbjct: 200 YFRIVNLMKKKRSEREAYITNAINKIKNEMTKMNLSGEI-NGRPKHIYSIYRKMIKQKKQ 258
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 259 FDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFKDYIAMPKQNMY 308
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 218 bits (556), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 182/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSY 85
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F +A +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 86 TFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 139
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R +KETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 140 VKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQ 199
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA +T+AI K++ + N+S + GR K +YSI+ KM+K+K
Sbjct: 200 YFRIVNLMKKKRSEREAYITNAINKIKNEMTKMNLSGEI-NGRPKHIYSIYRKMIKQKKQ 258
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 259 FDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFKDYIAMPKQNMY 308
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 176/290 (60%), Gaps = 7/290 (2%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
D + KA+ + + H+GQ+R SG+PYL+H +E A +L + + + GLLHDT++D
Sbjct: 39 DIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGILGELKLDEASIVTGLLHDTIEDTLA 98
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+ + + FG+ VA LV+GV+KLS+ S A + + + +A+ M +AMA D R +L
Sbjct: 99 TEEELTELFGSEVAHLVDGVTKLSKFSASA---SLSQEEKQAENFRKMIIAMAQDIRVIL 155
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADR HNM TLD + K+ R A+ETL+I+ PLANRLGIS K +LE+L F+++ P +
Sbjct: 156 VKLADRTHNMRTLDHMSEEKQARIAQETLDIYAPLANRLGISWIKTELEDLSFRYVKPQE 215
Query: 410 HTELSSKL--VECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
L +KL + E + + + L ++ + V GR K +YSI+ K+ + +
Sbjct: 216 FFALQAKLNKRKKEREKYIEDTCDLIRSKLAERGLKGEV-SGRFKHVYSIYKKIKSQGID 274
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+IHDI R+I CY+AL +VH++W VPG+ KD+I PK N Y
Sbjct: 275 FDQIHDIIAFRIIAPTAPSCYEALGLVHEMWKPVPGRFKDFIAIPKPNMY 324
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 176/289 (60%), Gaps = 10/289 (3%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
FV KA+ AE AHR Q R SG+PY++H ++ A +L + + + +A G LHD ++D ++
Sbjct: 27 FVEKAYLYAEDAHREQYRKSGEPYIIHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDVT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
D + F VA LV+GV+KL ++ ++E +A+ MF+AMA D R +LI
Sbjct: 87 LDDLKEAFSEEVAMLVDGVTKLGKIKYKSQEEQ------QAENHRKMFVAMAQDIRVILI 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TL LP K++R + ETLEIF PLA+RLGIS K +LE+ ++LNP Q+
Sbjct: 141 KLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQY 200
Query: 411 TELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
+ + K E V + ++++ +++ NI GR K +YSI+ KM+ +
Sbjct: 201 YRIVNLMKKKRAERELYVDEVVNEVKKRVEEVNIK-ADFSGRPKHIYSIYRKMVLQNKQF 259
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
+EI+D+ +R++V + +DCY L ++H W +PG+ KDYI PK N Y
Sbjct: 260 NEIYDLLAVRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMY 308
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQ 265
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 266 FDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLY 315
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 179/306 (58%), Gaps = 12/306 (3%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + HR Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHRSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITR 511
K +S+ KM K L+ +++ DI+G R++V+ +DCY+AL ++H W+ VPG+ KDYI+
Sbjct: 238 KKPWSVFRKMESKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYIST 297
Query: 512 PKFNGY 517
PK N Y
Sbjct: 298 PKQNDY 303
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQ 265
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 266 FDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLY 315
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQ 265
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 266 FDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLY 315
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQ 265
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 266 FDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLY 315
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQ 265
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 266 FDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLY 315
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 211 bits (538), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 174/289 (60%), Gaps = 18/289 (6%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ AER HRGQ R SGDPY+ H + +LA +G + + AGLLHDT++D +
Sbjct: 129 RAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDTVEDTEYGLED 188
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ R FG V LV+GV+KL ++ + +A+ + M +AMA D R ++IKLA
Sbjct: 189 LRRDFGDVVTLLVDGVTKLDKVK--------FGEAAQAETVRKMVVAMAKDPRVLVIKLA 240
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ L K+++ A+ETLEI+ PLA+RLG++T K +LE+L F L P + E+
Sbjct: 241 DRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEI 300
Query: 414 SSKLVE---CFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
+ E DE A+VT ++++Q L+ I V GR K YS++ KM+ +
Sbjct: 301 VRLVAERAPKRDEYLAVVT---DEVQQDLRAARIKATV-TGRPKHYYSVYQKMIVRGRDF 356
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
EI+D+ G+R++V+ DCY AL VH W VPG+ KDYI PKFN Y
Sbjct: 357 AEIYDLVGIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMY 405
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 169/286 (59%), Gaps = 10/286 (3%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A AH GQ R+SG+PY+ H V A +LA + + + A LLHD ++D +Y
Sbjct: 25 QAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQD 84
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ + FG VA+LVEGVSKL +L + K +A+ M +AM D R +LIKLA
Sbjct: 85 MEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLA 138
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DR HNM TL +L KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ +
Sbjct: 139 DRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVI 198
Query: 414 SS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEI 471
K + M+ + ++E L++ I V GR K LYSI+CKM+ K+ I
Sbjct: 199 KEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMVLKEQRFHSI 257
Query: 472 HDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
DIY R+IV + + CY+ L +H L+ PG++KDYI PK NGY
Sbjct: 258 MDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGY 303
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 169/286 (59%), Gaps = 10/286 (3%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A AH GQ R+SG+PY+ H V A +LA + + + A LLHD ++D +Y
Sbjct: 25 QAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQD 84
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ + FG VA+LVEGVSKL +L + K +A+ M +AM D R +LIKLA
Sbjct: 85 MEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLA 138
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DR HNM TL +L KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ +
Sbjct: 139 DRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVI 198
Query: 414 SS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEI 471
K + M+ + ++E L++ I V GR K LYSI+CKM+ K+ I
Sbjct: 199 KEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMVLKEQRFHSI 257
Query: 472 HDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
DIY R+IV + + CY+ L +H L+ PG++KDYI PK NGY
Sbjct: 258 MDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGY 303
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 169/286 (59%), Gaps = 10/286 (3%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A AH GQ R+SG+PY+ H V A +LA + + + A LLHD ++D +Y
Sbjct: 25 QAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQD 84
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ + FG VA+LVEGVSKL +L + K +A+ M +AM D R +LIKLA
Sbjct: 85 MEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLA 138
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DR HNM TL +L KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ +
Sbjct: 139 DRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVI 198
Query: 414 SS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEI 471
K + M+ + ++E L++ I V GR K LYSI+CKM+ K+ I
Sbjct: 199 KEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMVLKEQRFHSI 257
Query: 472 HDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
DIY R+IV + + CY+ L +H L+ PG++KDYI PK NGY
Sbjct: 258 MDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGY 303
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 179/290 (61%), Gaps = 10/290 (3%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+ LGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHHLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMKQKKQ 265
Query: 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R+IV + DCY L +VH LW +PG+ KDYI PK N Y
Sbjct: 266 FDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLY 315
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 178/306 (58%), Gaps = 12/306 (3%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITR 511
K +S+ KM K L+ +++ DI+G R++V+ +DCY+AL ++H W+ VPG+ KDYI+
Sbjct: 238 KKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYIST 297
Query: 512 PKFNGY 517
PK N Y
Sbjct: 298 PKQNDY 303
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 178/306 (58%), Gaps = 12/306 (3%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITR 511
K +S+ KM K L+ +++ DI+G R++V+ +DCY+AL ++H W+ VPG+ KDYI+
Sbjct: 238 KKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYIST 297
Query: 512 PKFNGY 517
PK N Y
Sbjct: 298 PKQNDY 303
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 178/306 (58%), Gaps = 12/306 (3%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITR 511
K +S+ KM K L+ +++ DI+G R++V+ +DCY+AL ++H W+ VPG+ KDYI+
Sbjct: 238 KKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYIST 297
Query: 512 PKFNGY 517
PK N Y
Sbjct: 298 PKQNDY 303
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 173/289 (59%), Gaps = 18/289 (6%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
KA+ AER HRGQ R SGDPY+ H + +LA +G + + AGLLHD+ +D D
Sbjct: 126 KAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDSREDTEYGLDD 185
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ R FG V LV+GV+KL ++ + +A+ + M +AMA D R ++IKLA
Sbjct: 186 LRRDFGDVVGLLVDGVTKLDKVK--------FGEAAQAETVRKMVVAMAKDPRVLVIKLA 237
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ L K+++ A+ETLEI+ PLA+RLG++T K +LE+L F L P + E+
Sbjct: 238 DRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEI 297
Query: 414 SSKLVE---CFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
+ E DE A+VT ++++ L+ + I V GR K YS++ K++ +
Sbjct: 298 VRLVAERAPKRDEYLAIVT---DEVQSDLRARRIKATV-TGRPKHYYSVYQKIIVRGRDF 353
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
EI+D+ G+R++V+ DCY AL VH W VPG+ KDYI PKFN Y
Sbjct: 354 AEIYDLVGIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMY 402
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 179/286 (62%), Gaps = 12/286 (4%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ AER H G +R SGDPY+ H + A + A IG ++T + A LLHDT++D S D
Sbjct: 57 RAYDTAERLHDGVIRKSGDPYITHPLAVATIAAEIGMDTTTLVAALLHDTVEDTDYSLDD 116
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ R FG VA LV+GV+KL +++ A EA+ + M +AM+ D R ++IK+A
Sbjct: 117 LTRDFGEEVARLVDGVTKLDKVALGA--------AAEAETIRKMIVAMSQDPRVLVIKVA 168
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ LP K+ + A++TLE+ PLA+RLG+++ K +LE+L F L P ++ E+
Sbjct: 169 DRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMASVKWELEDLSFAILYPKKYEEI 228
Query: 414 SSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEI 471
+ + + + I+++ L++ NI+ VL GR K +SI+ KM+ + D+I
Sbjct: 229 VRLVADRAPSRDRYLKEIIDQVTGGLRENNIAAEVL-GRPKHYWSIYQKMIVRGRDFDDI 287
Query: 472 HDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+ G+R++V+N +CY A+ VVH L+ +PG+ KDYI+ P+F Y
Sbjct: 288 FDLVGIRILVDNVNNCYAAIGVVHSLFNALPGRFKDYISAPRFGVY 333
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 175/289 (60%), Gaps = 10/289 (3%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
FV KA A AH Q+R SG+PY++H ++ A +LA + ++ VA G LHD ++D ++
Sbjct: 27 FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
D I FG V D+V+GV+KL ++ + E A + M +AM+ D R +L+
Sbjct: 87 LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLA------ENHRKMLMAMSKDIRVILV 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TL L K++R ++ET+EI+ PLA+RLGIS K +LE+L F++LN +
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 411 TELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
++S + E EA+V + K++ ++ + F + GR K +YSI+ KM KK
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKMRDKKKRF 259
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
D+I D+ +R ++E + D Y + +H+LW +PG+ KDYI PK NGY
Sbjct: 260 DQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGY 308
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 208 bits (529), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 178/306 (58%), Gaps = 12/306 (3%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMCEDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITR 511
K +S+ KM K L+ +++ DI+G R++V+ +DCY+AL ++H W+ VPG+ KDYI+
Sbjct: 238 KKPWSVFRKMETKGLSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYIST 297
Query: 512 PKFNGY 517
PK N Y
Sbjct: 298 PKQNDY 303
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 168/282 (59%), Gaps = 12/282 (4%)
Query: 240 AERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTF 299
A AH GQ R+SG+PY+ H V A ++A + + V A LLHD ++D + + + F
Sbjct: 3 ARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDHEAVMAALLHDVIEDTPYTEEQLKEEF 62
Query: 300 GAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHN 358
GA VA++V+GVSKL +L R+ + + M LAM D R VLIKLADR HN
Sbjct: 63 GASVAEIVDGVSKLDKLKFRTRQE------AQVENFRKMILAMTRDIRVVLIKLADRTHN 116
Query: 359 MMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLV 418
M TL +L KR+R AKETLEI+ PLA+RLGI K +LE+L F+ ++P ++ E+ KLV
Sbjct: 117 MRTLGSLRPDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSFQAMHPHRY-EVLKKLV 175
Query: 419 ECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIY 475
+ + IE++ Q +K + + F + GR K LY I+ KM K I DIY
Sbjct: 176 DV-ARSNRQDLIERISQEIKVRLENSGIFARVWGREKHLYKIYQKMRIKDQEFHSIMDIY 234
Query: 476 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
R+IV+N +DCY+ L +H L+ PG++KDYI PK NGY
Sbjct: 235 AFRVIVKNVDDCYRVLGQMHNLYKPRPGRVKDYIAVPKANGY 276
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 181/312 (58%), Gaps = 17/312 (5%)
Query: 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA 268
+L+ A+E+L Q++ R+ +V+ A AH GQ R+SG+PY++H V A +LA
Sbjct: 6 SLKDVAQEYLTEPQIE--ALRQSYVV-----ARDAHEGQTRSSGEPYIIHPVAVARILAE 58
Query: 269 IGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASK 328
+ + + A LLHD ++D ++ + + FG+ VA+LV+GVSKL +L R K
Sbjct: 59 MRLDLETLQAALLHDVIEDCDVTKEDLDAHFGSSVAELVDGVSKLDKLKFRDR------K 112
Query: 329 TVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANR 387
+A+ M LAM D R +LIKLADR NM TL AL K++R A+ETLEI+ PLA+R
Sbjct: 113 EAQAENFRKMVLAMVQDIRVILIKLADRTPNMRTLGALRPDKKRRIARETLEIYAPLAHR 172
Query: 388 LGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFL 445
LGI K +LE L F+ L P+++ L K + M+ ++E L++ +
Sbjct: 173 LGIHNIKTELEELGFEALYPNRYRVLKEVVKAARGNRKEMIQRIHSEIEGRLQEVGLPAR 232
Query: 446 VLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKM 505
V+ GR K+L+SI+ KM K+ I DIY R++V+ + CY+ L VH L+ P +M
Sbjct: 233 VV-GREKNLFSIYNKMKTKEQRFHTIMDIYAFRIVVDTADTCYRVLGQVHSLYKPRPARM 291
Query: 506 KDYITRPKFNGY 517
KDYI PK NGY
Sbjct: 292 KDYIAVPKANGY 303
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 202 bits (513), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 164/293 (55%), Gaps = 10/293 (3%)
Query: 228 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287
F + KA AE+ H GQ R SG+PY++H + ++ LA + AGLLHD L+D
Sbjct: 35 FERKSIFKALEIAEQLHYGQYRESGEPYIIHPIMVSLFLAKFQLDFKATIAGLLHDVLED 94
Query: 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DAR 346
+ + I + F + L++GV+K+ L +N EA+ + MF AM D R
Sbjct: 95 TNVEKEEIVKEFDEEILSLIDGVTKIHDL------HNKTRSIKEANTISKMFFAMTHDIR 148
Query: 347 AVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 406
++IKLAD+LHNM TL LP ++ R AK+ L +VP+A RLGIS+ K LE+L FKHL
Sbjct: 149 IIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLGISSLKTYLEDLSFKHLY 208
Query: 407 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKK 464
P + E+ + L E E + +E+ L+ I + R K YSI KM +
Sbjct: 209 PKDYKEIKNFLSETKIEREKKLYKGKLSIEKELQKSGIEAEITV-RSKHFYSIFRKMQTR 267
Query: 465 KLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
+ +I D G+R+I + +++CY+ L +VH++W +PG++KDYI PK N Y
Sbjct: 268 TNKLTQIFDTLGIRIICKKQKECYEILEIVHRVWKPIPGRLKDYIASPKENKY 320
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 173/315 (54%), Gaps = 37/315 (11%)
Query: 215 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANST 274
KEF A L V +AF A++ H Q+R SGDPY+ H + A +LA +G + T
Sbjct: 69 KEFYPKANLS-------IVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAELGMDIT 121
Query: 275 VVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADR 334
+ A LLHDT++D + + + FG V LV+GV+KL ++ E +
Sbjct: 122 TLVAALLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV--------VLGSAAEGET 173
Query: 335 LHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTW 393
+ M AMA D R ++IK+ADRLHNM T+ LP K+ R A+ETLE+ PLA+RLG+++
Sbjct: 174 IRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASV 233
Query: 394 KVQLENLCFKHLNPDQHTEL-----------SSKLVECFDEAMVTSAIEKLEQALKDKNI 442
K +LE+L F L+P ++ E+ + L + E + T K++ ++
Sbjct: 234 KWELEDLSFAILHPKKYEEIVRLVAGRAPSRDTYLAKVRAEIISTLGASKIKATVE---- 289
Query: 443 SFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVP 502
GR K +SI+ KM+ K D+IHD+ G+R++ + DCY A+ VVH LW +
Sbjct: 290 ------GRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDEIRDCYAAVGVVHSLWQPMA 343
Query: 503 GKMKDYITRPKFNGY 517
G+ KDYI +P++ Y
Sbjct: 344 GRFKDYIAQPRYGVY 358
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 168/295 (56%), Gaps = 30/295 (10%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A++ H Q+R SGDPY+ H + A +LA +G ++T + A LLHDT++D + +
Sbjct: 85 RAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEA 144
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ FG V LV+GV+KL ++ E + + M AMA D R ++IK+A
Sbjct: 145 LTEEFGEEVGHLVDGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVA 196
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ LP K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+
Sbjct: 197 DRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 256
Query: 414 -----------SSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ L + E + T K++ ++ GR K +SI+ KM+
Sbjct: 257 VRLVAGRAPSRDTYLAKVRAEIVNTLTASKIKATVE----------GRPKHYWSIYQKMI 306
Query: 463 KKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
K D+IHD+ G+R++ + DCY A+ VVH LW + G+ KDYI +P++ Y
Sbjct: 307 VKGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVY 361
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 170/287 (59%), Gaps = 14/287 (4%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A+ H Q R +G+PY++H + A+ LA +G + + A LLHDTL+D +Y+
Sbjct: 29 RAYEFAKEKHGEQKRKTGEPYIIHPLNVALKLAELGMDHETIIAALLHDTLEDTDTTYEE 88
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
I FG VA LVEGV+K+ ++ K+ +A+ + LA A D R +L+KL+
Sbjct: 89 IKERFGERVAKLVEGVTKIGKIK---------YKSEQAENYRKLILATAEDPRVILLKLS 139
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRL N+ TL KR++ AKET+EI+ PLA+RLG+ + K +LE+ FK+L P+++ ++
Sbjct: 140 DRLDNVKTLWVFREEKRKKIAKETMEIYAPLAHRLGVWSIKNELEDWAFKYLYPEEYEKV 199
Query: 414 SSKLVEC---FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDE 470
+ + E +E + I K+ + L+ I + R K YSI K +K + +++
Sbjct: 200 RNFVKESRKNLEEYLRKYVIPKVRKELEKYGIEAEIKY-RSKHYYSIWEKTRRKGIRLED 258
Query: 471 IHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
+HDI G+R+IV +CY L ++H L+ VPGK KDYI+ PK N Y
Sbjct: 259 VHDILGVRIIVNTVPECYTVLGIIHSLFRPVPGKFKDYISLPKPNLY 305
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 168/295 (56%), Gaps = 30/295 (10%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A++ H Q+R SGDPY+ H + A +LA +G ++T + A LLHDT++D + +
Sbjct: 33 RAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEA 92
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ FG V LV+GV+KL ++ E + + M AMA D R ++IK+A
Sbjct: 93 LTEEFGEEVGHLVDGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVA 144
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ LP K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+
Sbjct: 145 DRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 204
Query: 414 -----------SSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ L + E + T K++ ++ GR K +SI+ KM+
Sbjct: 205 VRLVAGRAPSRDTYLAKVRAEIVNTLTASKIKATVE----------GRPKHYWSIYQKMI 254
Query: 463 KKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
K D+IHD+ G+R++ + DCY A+ VVH LW + G+ KDYI +P++ Y
Sbjct: 255 VKGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVY 309
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 173/287 (60%), Gaps = 11/287 (3%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
KA+ AE H GQ+R SG Y++H + T LA + AGLLHD L+D +++
Sbjct: 29 KAYEYAEEKHHGQVRNSGARYIIHPLWTTFFLAQWRMGPKTLIAGLLHDVLEDTPATFEE 88
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ FG +A+LVEGV+K+S A+EN T ++A L ++L+MA D R +++KLA
Sbjct: 89 LQELFGIEIANLVEGVTKVSYF---AKENRTQ---IKAQYLRKLYLSMAKDIRVIIVKLA 142
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHN+ T+ L ++Q A+E+LEI+ +A+RLG+ K ++E++ FK +NP Q+ ++
Sbjct: 143 DRLHNLKTIGYLKPERQQIIARESLEIYSAIAHRLGMKAVKQEIEDISFKIINPVQYNKI 202
Query: 414 SSKLVECFD---EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDE 470
S L+E + E + IE+L++ L + + + GR KS+YSI+ KM + D+
Sbjct: 203 VS-LLESSNKERENTINQKIEELKKILITEKKMSVKVYGRSKSIYSIYRKMNQFGKNFDD 261
Query: 471 IHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
IHDI +R+I + +DCY+ L VHQ + + + KDYI PK N Y
Sbjct: 262 IHDILAVRIITNSVDDCYKVLGFVHQHYTPLNNRFKDYIATPKHNLY 308
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 161/289 (55%), Gaps = 4/289 (1%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
+ KA +++ H Q R SG+P+ +H + TA+ L +S V AGLLHD ++D ++
Sbjct: 39 LITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDSNTVCAGLLHDIIEDTQVT 98
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL-AMADARAVLI 350
+ FG + DLV V+K++ SK R+ N + + L + + + + A+++
Sbjct: 99 EADLTAIFGKEITDLVVKVTKITSESKKQRQLNRKKEDLNLKSLVNIAMSSQQEVNALVL 158
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRL N+ +++ L + K++ AKETLE++ +A R+G+ K QL +L FK L+P
Sbjct: 159 KLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVLDPKNF 218
Query: 411 TELSSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
SK+ + F + + ++LE+ L+ I + L R K +YS + K+ + +
Sbjct: 219 NNTLSKINQQKVFYDNEWGNFKKQLEEMLEQNQIEYR-LESRIKGIYSTYQKLTFHEQNI 277
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
+IHD++ +RLIV++E DCY L ++H + + KDYI PK N Y
Sbjct: 278 AKIHDLFAIRLIVKSELDCYHLLGLIHLNFTVLMKHFKDYIASPKQNFY 326
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 144/270 (53%), Gaps = 4/270 (1%)
Query: 251 SGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGV 310
+G L E +L + ++ + A LL+ ++ S D + + + LV+GV
Sbjct: 50 NGPLLLWRGRELVEILVTLSMDADTLIAALLYPLVEGGCYSTDALKEEYSGTILHLVQGV 109
Query: 311 SKLSQLSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCK 369
++ +S+L ++ + D + M L+M D R V+IKLA+R+ N+ + P
Sbjct: 110 EQMCAISQLKSTAEETAQAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEV 169
Query: 370 RQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVT 427
R+ A+E I+ PLANRLGI K ++E+ F++ +PD + +++ +L E E +T
Sbjct: 170 RRAAAQECANIYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLSERRIDREDYIT 229
Query: 428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDC 487
++ L A+K NI V GR K +YSI KM KK L DE+ D+ +R++ E +DC
Sbjct: 230 HFVDDLSDAMKASNIRAEVQ-GRPKHIYSIWRKMQKKSLEFDELFDVRAVRIVAEELQDC 288
Query: 488 YQALRVVHQLWAEVPGKMKDYITRPKFNGY 517
Y AL VVH + +P + DY+ PK NGY
Sbjct: 289 YAALGVVHTKYRHLPKEFDDYVANPKPNGY 318
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 4/265 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 492
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 493 VVHQLWAEVPGKMKDYITRPKFNGY 517
+VH + +P + DY+ PK NGY
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGY 319
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 4/265 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 492
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 493 VVHQLWAEVPGKMKDYITRPKFNGY 517
+VH + +P + DY+ PK NGY
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGY 319
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 4/265 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 492
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 493 VVHQLWAEVPGKMKDYITRPKFNGY 517
+VH + +P + DY+ PK NGY
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGY 319
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 4/265 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALR 492
L +K + + V GR K +YSI KM KK L DE+ D+ +R++ E +DCY AL
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALG 294
Query: 493 VVHQLWAEVPGKMKDYITRPKFNGY 517
+VH + +P + DY+ PK NGY
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGY 319
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 160/305 (52%), Gaps = 4/305 (1%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
+FLA K + + KAFY A+ H Q R SG+P+ +H + TA+ L +
Sbjct: 10 DFLAKIAQKFTNAEIELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSLVEWNMDPIT 69
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+ AGLLHD ++D + I F +A+LV V+K++ SK R + +
Sbjct: 70 ICAGLLHDIIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNKKENLNLKSF 129
Query: 336 HTMFL-AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ + + + +++KLADRL N+ +++ LP+ K++ AKETLE++ +A R+G+ K
Sbjct: 130 VNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYPVK 189
Query: 395 VQLENLCFKHLNPDQHTELSSKL--VECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHK 452
+L +L FK L+ + SK+ + F + + ++L++ L I + L R K
Sbjct: 190 TKLADLSFKVLDLKNYDNTLSKINKQKVFYDNEWDNFKQQLKKILAQNQIEY-QLESRIK 248
Query: 453 SLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRP 512
+YS + K+ + + +IHD++ +RLI ++E DCY L ++H + KDYI P
Sbjct: 249 GIYSTYKKLTVHEQNISKIHDLFAIRLITKSELDCYHILGLIHLNFLIDSKYFKDYIASP 308
Query: 513 KFNGY 517
K N Y
Sbjct: 309 KQNLY 313
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 141/264 (53%), Gaps = 11/264 (4%)
Query: 260 VETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKL 319
VE +L + ++ + +L + + ++ + FGA + L++GV ++ + +L
Sbjct: 63 VEMVEILHELNMDAETLLTAMLFPIVANKLTDWESLKEKFGAKITKLLKGVLEMDNIRQL 122
Query: 320 ARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQR---FAK 375
+ ++ ++ D + M LAM D R V+IKLA+R+ DA C + K
Sbjct: 123 NASH--SANALQVDNVRRMLLAMVDDFRCVIIKLAERI--TFLRDAEHRCAEEDKVLAVK 178
Query: 376 ETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKL 433
E I+ PLANRLGI K +LE+ CF++L+P+Q+ ++ L E E + + +L
Sbjct: 179 ECSYIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRAIAKLLQERRLDREHYIADFVSEL 238
Query: 434 EQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRV 493
L++ NI + + GR K +YSI KM KK L ++D+ +R+IV+ +DCY AL +
Sbjct: 239 SGYLRE-NIEQVEVYGRPKHIYSIWRKMQKKHLEFSGLYDVRAVRIIVQKLQDCYTALGI 297
Query: 494 VHQLWAEVPGKMKDYITRPKFNGY 517
VH + +P + DY+ PK NGY
Sbjct: 298 VHTQFKHLPKEFDDYVANPKPNGY 321
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 240 AERAHRGQMR--ASGDPYLLHCVETAMLLAAIG--ANSTVVAAGLLHDTLDDAFLSYDYI 295
A HR Q G PY+ H + A +L+ G + V+ A LLHDT++D +++ +
Sbjct: 16 AAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEITDVEVIQAALLHDTVEDTDTTFEEL 75
Query: 296 FRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADR 355
FGA VA +V+GV+ L K RE R +A L+KLAD+
Sbjct: 76 ESVFGATVARIVQGVTDDKSLPKAERE-----------RQQVEHAPHCSHQAKLVKLADK 124
Query: 356 LHNMMTLD 363
L+N+ L+
Sbjct: 125 LYNLRDLN 132
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 23/173 (13%)
Query: 240 AERAHRGQMR--ASGDPYLLHCVETAMLL---AAIGANSTVVAAGLLHDTLDDAFLSYDY 294
A R HR Q R G PY+ H + A +L A I + V+ A LLHDT++D + D
Sbjct: 15 AARKHRQQRRKDPEGTPYINHPIGVARILTHEAGI-TDIVVLQAALLHDTVEDTDTTLDE 73
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLAD 354
+ FGA V LVE V+ L KL R+ RL + A L+KLAD
Sbjct: 74 VELHFGAQVRRLVEEVTDDKTLPKLERK-----------RLQVEQAPHSSPGAKLVKLAD 122
Query: 355 RLHNMMTLDALPLCKRQRFAKETLEIFVPLANRL--GISTWKVQLENLCFKHL 405
+L+N+ L+ C + +++ ++ + A ++ G+ QLE KHL
Sbjct: 123 KLYNLRDLNR---CTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEE-ALKHL 171
>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1
Length = 1179
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 21/291 (7%)
Query: 241 ERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFG 300
E H+ + P +H + A+ L +S+ A LLH+ + L DY F
Sbjct: 17 ELYHKYCYDKTTYPDQIHTITKALQL-----DSSSFTAVLLHENIQHLNLE-DY--NHFN 68
Query: 301 AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMM 360
+ LV+ ++KLS + A + + L A+L L LH +
Sbjct: 69 NNIIYLVDVINKLSTIHYKPY----AEQYIHFHELLLTINPKLQETAILTSLVPLLHKVS 124
Query: 361 TLD-ALPLCKRQRFAKETLEIFVP-LANRLGISTWKVQLENLCFKHLNPDQHTELSSKLV 418
+ Q ++ ++P L + + L++LCFK P++ + +
Sbjct: 125 IFNLEYNNTNAQHISEIITNCYIPYLLSYTAHNDLAYLLQDLCFKIQYPEERNRILHYMY 184
Query: 419 ECFDEAMVTSAIEKLEQAL----KDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDI 474
+ + + + I +EQ + NI L R KS YSI K L K + + ++DI
Sbjct: 185 WLYPD--IDNIIHNIEQQFGNIFRKLNIK-ASLSYRIKSPYSIWIKTLVKDIHITALNDI 241
Query: 475 YGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLS 525
R IV N++ CY +++H + + + DYI PK NGY +V+S
Sbjct: 242 LAFRAIVPNKKACYDVSKLIHLHYNTITSQFVDYIRYPKNNGYQSIHLVIS 292
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 240 AERAHRGQMRA-SGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRT 298
A RAH Q R G PY++H + A ++ ++ ++AA LLHDT++D + I
Sbjct: 21 ATRAHGEQKRKYDGRPYIVHPIAVAEIVRSVPHTPEMIAAALLHDTVEDTDATLLEIKEA 80
Query: 299 FGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHN 358
FG VA L V+ L+ +S N K E DR H LA A A A +KLAD + N
Sbjct: 81 FGPKVATL---VAWLTDISTPFHGNRQVRK--ELDRQH---LASAPAAAKTVKLADLIDN 132
Query: 359 MMTLDA 364
+ + A
Sbjct: 133 AIAIKA 138
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 232 FVIKAFYEAERAHRGQMRASGD--PYLLHCVETAMLLAAIGA--NSTVVAAGLLHDTLDD 287
+++A A H+ Q R + PY+ H + A +L+ G ++ V+ A LLHDT++D
Sbjct: 7 LILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALLHDTVED 66
Query: 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARA 347
+++ I FG V ++VE V+ L K+ R+ RL +A
Sbjct: 67 TNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMERK-----------RLQMEHAPHCSQKA 115
Query: 348 VLIKLADRLHNMMTL 362
L+KLAD+L+N+ L
Sbjct: 116 KLVKLADKLYNLRDL 130
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 244 HRGQMRASGD--PYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYIFRTF 299
HR Q R PY+ H + + +L+ A + V+ A LLHD ++D S++ + + F
Sbjct: 20 HRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLF 79
Query: 300 GAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359
G V LV V+ L K R+ RL A + RA LIKLAD+L N+
Sbjct: 80 GPDVCGLVREVTDDKSLEKQERK-----------RLQIENAAKSSCRAKLIKLADKLDNL 128
Query: 360 MTL 362
L
Sbjct: 129 RDL 131
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 240 AERAHRGQMR--ASGDPYLLHCVETAMLL---AAIGANSTVVAAGLLHDTLDDAFLSYDY 294
A HR Q R G PY+ H + A +L A I + V+ A LLHDT++D + D
Sbjct: 15 AAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGI-TDIVVLQAALLHDTVEDTDTTLDE 73
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLAD 354
+ FGA V LVE V+ L KL R+ + + A L+KLAD
Sbjct: 74 VELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQA-----------PHSSPGAKLVKLAD 122
Query: 355 RLHNMMTLD 363
+L+N+ L+
Sbjct: 123 KLYNLRDLN 131
>sp|P39583|YWAC_BACSU GTP pyrophosphokinase YwaC OS=Bacillus subtilis (strain 168)
GN=ywaC PE=1 SV=1
Length = 210
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 449 GRHKSLYSIHCKMLKK------KLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVP 502
R KS SI K+++K K + IHDI G+R+I D Y + V+ Q
Sbjct: 57 SRVKSFESIVNKLMRKGCEITTKEMKEHIHDIAGVRIICSFISDIYNVVNVLKQHEDLRI 116
Query: 503 GKMKDYITRPKFNGY 517
K+KDYI PK NGY
Sbjct: 117 VKVKDYIQTPKPNGY 131
>sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 PE=1 SV=3
Length = 2179
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 238 YEAERAHRGQMRASG--DPY----LLHCVETAMLLAAIGANSTVVAAGL--LHDTLDDAF 289
Y R G M+ G +P +L C+ + L G + V A + L ++
Sbjct: 944 YYPSRFQAGVMKGVGPAEPGDCGGILRCIHGPIGLLTAGGSGYVCFADIRQLECIAEEQG 1003
Query: 290 LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADAR 346
LS DYI R FG G D + +K+++L ++A++ T ++ + + M A
Sbjct: 1004 LS-DYITGLGRAFGVGFTDQIS--TKVTELQEVAKDFLTT-------KVLSKVVKMVSAL 1053
Query: 347 AVLIKLADRLHNMMTLDALPLCK--RQRFAKETL--EIFVPLANRLGISTWKVQLENLCF 402
++ + D L + AL C RF K + VP R W + + C
Sbjct: 1054 VIICRNHDDLVTVTATLALLGCDGSPWRFLKMYISKHFQVPYIERQANDGWFRKFNDACN 1113
Query: 403 KHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFL 445
+ SKL+E ++ A EKLE K K + L
Sbjct: 1114 AAKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDIL 1156
>sp|Q5BK71|ARL11_RAT ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus
GN=Arl11 PE=2 SV=1
Length = 173
Score = 32.7 bits (73), Expect = 6.7, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 391 STWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNIS---FLVL 447
+TWK LE + +L +++ DEA + A+ +LE+ L+D N++ FLVL
Sbjct: 70 ATWKDYLEGI-----------DLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVL 118
Query: 448 CGRHKSLYSIHCKMLKKKLTMDEIHD 473
+ ++ ++ ++ +L ++ D
Sbjct: 119 ANKQEAPDALPLLEIRNRLDLERFQD 144
>sp|Q7A638|FLIPR_STAAN FPRL1 inhibitory protein OS=Staphylococcus aureus (strain N315)
GN=flr PE=3 SV=1
Length = 133
Score = 32.7 bits (73), Expect = 6.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 273 STVVAAGLLHDTLD-DAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVE 331
STV+AAGLL T D AF SY++ +AD + ++ KL +E++ +
Sbjct: 12 STVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLAD--QAKKDDERIDKLMKESDKNLTPYK 69
Query: 332 ADRLHTMF-----LAMADARAVLIKLAD 354
A+ ++ ++ L+ D + ++++ D
Sbjct: 70 AETVNDLYLIVKKLSQGDVKKAVVRIKD 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,001,408
Number of Sequences: 539616
Number of extensions: 7251156
Number of successful extensions: 22670
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 21112
Number of HSP's gapped (non-prelim): 687
length of query: 533
length of database: 191,569,459
effective HSP length: 122
effective length of query: 411
effective length of database: 125,736,307
effective search space: 51677622177
effective search space used: 51677622177
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)