Query 009478
Match_columns 533
No_of_seqs 265 out of 1925
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 13:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 5.5E-88 1.2E-92 743.0 28.8 311 212-529 7-320 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2.2E-87 4.8E-92 746.7 29.7 310 216-529 19-331 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 2.3E-84 5E-89 722.5 29.1 309 214-529 4-315 (702)
4 KOG1157 Predicted guanosine po 100.0 9.2E-85 2E-89 670.2 23.2 361 130-529 6-368 (543)
5 TIGR00691 spoT_relA (p)ppGpp s 100.0 2.9E-80 6.4E-85 689.6 26.8 287 236-529 1-290 (683)
6 PF13328 HD_4: HD domain; PDB: 100.0 2.1E-39 4.5E-44 299.8 3.7 152 236-391 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 99.8 2.8E-21 6E-26 173.6 10.1 100 428-528 2-107 (129)
8 COG2357 PpGpp synthetase catal 99.8 9.4E-19 2E-23 172.4 8.7 86 444-529 52-143 (231)
9 PF04607 RelA_SpoT: Region fou 99.8 4.7E-19 1E-23 155.6 5.4 76 449-524 1-79 (115)
10 TIGR03276 Phn-HD phosphonate d 98.3 1.5E-06 3.3E-11 83.9 7.3 71 244-314 13-102 (179)
11 smart00471 HDc Metal dependent 94.8 0.025 5.5E-07 47.3 3.0 38 252-289 2-45 (124)
12 TIGR03401 cyanamide_fam HD dom 93.3 0.43 9.4E-06 48.0 8.9 127 227-374 35-182 (228)
13 PRK12703 tRNA 2'-O-methylase; 90.9 1.9 4.1E-05 46.1 10.6 74 232-311 171-257 (339)
14 PRK10119 putative hydrolase; P 87.4 3.2 7E-05 42.0 9.0 52 232-286 6-62 (231)
15 PF01966 HD: HD domain; Inter 85.1 0.46 9.9E-06 40.3 1.4 33 256-288 2-41 (122)
16 TIGR00295 conserved hypothetic 84.4 3.2 6.8E-05 39.5 6.9 57 253-309 12-86 (164)
17 COG1418 Predicted HD superfami 82.0 2.1 4.6E-05 42.9 4.9 52 251-302 33-97 (222)
18 COG4341 Predicted HD phosphohy 80.9 1.7 3.7E-05 42.1 3.6 34 251-284 25-60 (186)
19 PRK14707 hypothetical protein; 79.9 8 0.00017 49.7 9.5 83 446-531 2306-2400(2710)
20 cd00077 HDc Metal dependent ph 78.8 1.5 3.2E-05 37.1 2.2 35 254-288 2-44 (145)
21 PRK03826 5'-nucleotidase; Prov 71.4 9.9 0.00021 37.5 6.1 35 253-287 27-72 (195)
22 TIGR00277 HDIG uncharacterized 67.7 8.7 0.00019 30.4 4.1 34 253-286 3-41 (80)
23 COG1078 HD superfamily phospho 61.2 4.5 9.7E-05 44.4 1.6 30 255-284 52-95 (421)
24 COG1713 Predicted HD superfami 60.4 10 0.00023 37.4 3.8 37 253-289 16-57 (187)
25 COG1896 Predicted hydrolases o 57.3 21 0.00045 35.2 5.4 97 251-359 30-141 (193)
26 TIGR00488 putative HD superfam 55.8 13 0.00028 34.8 3.5 34 253-286 7-45 (158)
27 PRK14136 recX recombination re 54.9 8.4 0.00018 40.8 2.3 100 400-503 167-273 (309)
28 PRK14137 recX recombination re 54.9 14 0.00031 36.4 3.8 105 392-501 37-148 (195)
29 PF12917 HD_2: HD containing h 52.9 15 0.00034 37.0 3.7 97 253-359 28-142 (215)
30 PF13023 HD_3: HD domain; PDB: 51.2 9 0.0002 36.5 1.7 95 253-360 21-129 (165)
31 PRK00106 hypothetical protein; 49.6 18 0.0004 41.0 4.1 37 251-287 347-388 (535)
32 PRK09169 hypothetical protein; 49.2 48 0.001 43.4 7.8 96 432-530 1901-2009(2316)
33 PF09371 Tex_N: Tex-like prote 48.6 1.1E+02 0.0024 30.2 8.9 33 376-408 90-140 (193)
34 PF05153 DUF706: Family of unk 48.5 28 0.00061 35.9 4.8 53 232-284 40-93 (253)
35 PRK14707 hypothetical protein; 47.7 1.1E+02 0.0025 40.2 10.5 170 355-530 2416-2630(2710)
36 COG2316 Predicted hydrolase (H 46.9 44 0.00096 32.9 5.6 63 253-315 46-123 (212)
37 cd08780 Death_TRADD Death Doma 45.4 83 0.0018 27.8 6.5 75 367-443 2-81 (90)
38 PRK12705 hypothetical protein; 45.3 61 0.0013 36.7 7.3 37 251-287 320-361 (508)
39 PRK12704 phosphodiesterase; Pr 44.3 47 0.001 37.6 6.2 37 251-287 332-373 (520)
40 TIGR03319 YmdA_YtgF conserved 44.1 55 0.0012 37.0 6.7 35 252-286 327-366 (514)
41 PRK01286 deoxyguanosinetriphos 43.0 25 0.00055 37.6 3.7 33 254-286 62-99 (336)
42 PRK07152 nadD putative nicotin 41.5 26 0.00057 37.0 3.6 35 253-287 195-234 (342)
43 PRK03007 deoxyguanosinetriphos 38.7 51 0.0011 36.5 5.3 58 229-286 40-107 (428)
44 cd08318 Death_NMPP84 Death dom 38.5 1.3E+02 0.0029 25.6 6.8 74 366-443 6-79 (86)
45 KOG1573 Aldehyde reductase [Ge 34.9 87 0.0019 30.8 5.5 53 232-284 74-127 (204)
46 COG0079 HisC Histidinol-phosph 32.0 1.8E+02 0.0038 31.2 8.0 114 385-498 218-352 (356)
47 TIGR01353 dGTP_triPase deoxygu 31.3 62 0.0013 35.2 4.4 58 229-286 8-86 (381)
48 PRK13480 3'-5' exoribonuclease 30.5 49 0.0011 35.1 3.5 31 255-285 160-196 (314)
49 TIGR03812 tyr_de_CO2_Arch tyro 30.5 3.2E+02 0.0068 28.2 9.4 70 427-496 294-372 (373)
50 PRK05318 deoxyguanosinetriphos 29.6 37 0.0008 37.5 2.5 58 229-286 28-106 (432)
51 COG0466 Lon ATP-dependent Lon 26.0 7.8E+02 0.017 29.6 12.1 85 341-438 159-243 (782)
52 PF07091 FmrO: Ribosomal RNA m 25.6 1.8E+02 0.0039 30.2 6.3 142 364-511 7-166 (251)
53 PF06303 MatP: Organiser of ma 24.9 1.2E+02 0.0025 29.2 4.4 58 395-469 52-116 (148)
54 KOG0260 RNA polymerase II, lar 24.9 3.7E+02 0.0081 33.9 9.5 8 126-133 1571-1578(1605)
55 PRK13520 L-tyrosine decarboxyl 23.5 5.2E+02 0.011 26.5 9.5 70 429-498 291-369 (371)
56 KOG2874 rRNA processing protei 23.3 61 0.0013 34.2 2.5 61 421-481 66-145 (356)
57 TIGR03760 ICE_TraI_Pfluor inte 23.3 3.2E+02 0.0069 27.5 7.5 32 255-286 68-119 (218)
58 PRK01005 V-type ATP synthase s 21.9 4.1E+02 0.0088 26.6 7.9 92 383-483 74-176 (207)
59 COG0232 Dgt dGTP triphosphohyd 21.9 1.3E+02 0.0028 33.4 4.7 58 229-286 38-110 (412)
60 PF09824 ArsR: ArsR transcript 21.1 3.3E+02 0.0071 26.6 6.7 103 259-374 4-110 (160)
61 PRK10885 cca multifunctional t 20.6 4.3E+02 0.0094 29.0 8.5 33 254-286 227-259 (409)
62 COG4747 ACT domain-containing 20.5 2E+02 0.0043 27.0 5.0 46 447-492 10-60 (142)
63 PRK00117 recX recombination re 20.3 1E+02 0.0022 28.7 3.2 101 397-501 13-121 (157)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=5.5e-88 Score=742.97 Aligned_cols=311 Identities=42% Similarity=0.655 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhcccccCCCC
Q 009478 212 TYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291 (533)
Q Consensus 212 ~~~~~ll~~~~~~~~~~d~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVEDT~vT 291 (533)
..+.++++.+....+..+.+ +.+|+.||.++|.+|+|++|+|||.||++||.+|+++++|.++++||||||++|||++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t 85 (701)
T COG0317 7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVT 85 (701)
T ss_pred ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCC
Confidence 34567777777777766666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhChhHHHHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhcc-CceeehhhhhhhhhccccccCCCHHHH
Q 009478 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKR 370 (533)
Q Consensus 292 leeI~e~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAma-D~RAvLIKLADRLhNMrtL~~l~~ekq 370 (533)
.++|++.||++|++||+||||+..+.++. .....|+|++|+||++|. |+||++|||||||||||++..++++||
T Consensus 86 ~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 86 EELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999999999884221 223447999999999997 999999999999999999999889999
Q ss_pred HHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHhcCccccccc
Q 009478 371 QRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLC 448 (533)
Q Consensus 371 ~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~--~e~~I~~~~~~L~~~L~~~gI~~~~V~ 448 (533)
+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.+ ++.+|++++..|++.|.++||+++ |.
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~ 239 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VS 239 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EE
Confidence 999999999999999999999999999999999999999999999998876 678999999999999999999996 99
Q ss_pred ccccchHHHHHHHHhcCCCCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeCC
Q 009478 449 GRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYER 528 (533)
Q Consensus 449 gR~Ks~ySI~~Km~rk~~~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~~ 528 (533)
||+||+||||+||++|+..|++|+|++|+||||++..|||++||+||.+|+|+|+|||||||+||+||||||||+|..+.
T Consensus 240 gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~ 319 (701)
T COG0317 240 GRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPE 319 (701)
T ss_pred cCCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 009478 529 N 529 (533)
Q Consensus 529 ~ 529 (533)
.
T Consensus 320 g 320 (701)
T COG0317 320 G 320 (701)
T ss_pred C
Confidence 5
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.2e-87 Score=746.75 Aligned_cols=310 Identities=29% Similarity=0.486 Sum_probs=287.0
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhcccccCCCCHHHH
Q 009478 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYI 295 (533)
Q Consensus 216 ~ll~~~~~~~~~~d~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVEDT~vTleeI 295 (533)
+++..+..+. ..+.+.|++|+.||.++|.| |++|+|||.||++||.||+++++|.++|+||||||++|||++|.++|
T Consensus 19 ~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~i 95 (743)
T PRK10872 19 KWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVL 95 (743)
T ss_pred HHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHHH
Confidence 4555555444 56788999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhChhHHHHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhcc-CceeehhhhhhhhhccccccCCCHHHHHHHH
Q 009478 296 FRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFA 374 (533)
Q Consensus 296 ~e~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAma-D~RAvLIKLADRLhNMrtL~~l~~ekq~r~A 374 (533)
++.||++|+.||+||||++.+....+.........|+|++|||||||+ |+||++|||||||||||||..++++||+++|
T Consensus 96 ~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~iA 175 (743)
T PRK10872 96 RESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175 (743)
T ss_pred HHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 999999999999999999987542211000122458999999999997 9999999999999999999999999999999
Q ss_pred hhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHhcCccccccccccc
Q 009478 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHK 452 (533)
Q Consensus 375 ~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~--~e~~I~~~~~~L~~~L~~~gI~~~~V~gR~K 452 (533)
+||++||||||+||||++||||||||||+||+|++|+.|+++|.+.+ ++.+|+.+++.|++.|++.||+++ |.||.|
T Consensus 176 ~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~K 254 (743)
T PRK10872 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRPK 254 (743)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeecC
Confidence 99999999999999999999999999999999999999999998765 578999999999999999999995 999999
Q ss_pred chHHHHHHHHhcCCCCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeCCc
Q 009478 453 SLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYERN 529 (533)
Q Consensus 453 s~ySI~~Km~rk~~~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~~~ 529 (533)
++||||+||++|+++|++|+|++|+||||+++.|||++||+||++|+|+|++|||||++||+||||||||+|..+++
T Consensus 255 ~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~~~dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGYqSLHttv~~~~g 331 (743)
T PRK10872 255 HIYSIWRKMQKKSLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGG 331 (743)
T ss_pred CHHHHHHHHHHcCCCHHHhccceeEEEEECCHHHHHHHHHHHHhhccCCcchhhhcccCCCCCCcceeEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998665
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=2.3e-84 Score=722.48 Aligned_cols=309 Identities=38% Similarity=0.593 Sum_probs=291.4
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhcccccCCCCHH
Q 009478 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (533)
Q Consensus 214 ~~~ll~~~~~~~~~~d~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVEDT~vTle 293 (533)
+.+++.....+.+..+.+++.+|+.||.++|.||+|++|+||+.||++||.+|+++++|.++++||||||++|||++|.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~e 83 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQ 83 (702)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCHH
Confidence 35666666777777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhChhHHHHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhcc-CceeehhhhhhhhhccccccCCCHHHHHH
Q 009478 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (533)
Q Consensus 294 eI~e~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAma-D~RAvLIKLADRLhNMrtL~~l~~ekq~r 372 (533)
+|++.||++|+.+|++|||+..++... .+..|++++|+||++|+ |+||++|||||||||||+|..+++++|++
T Consensus 84 ~i~~~FG~~Va~lV~gvTk~~~l~~~~------~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~ 157 (702)
T PRK11092 84 DMEQLFGKSVAELVEGVSKLDKLKFRD------KKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR 157 (702)
T ss_pred HHHHHHCHHHHHHHHHHHhhccccccc------hhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH
Confidence 999999999999999999998876421 12347899999999997 99999999999999999999999999999
Q ss_pred HHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHhcCccccccccc
Q 009478 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (533)
Q Consensus 373 ~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~--~e~~I~~~~~~L~~~L~~~gI~~~~V~gR 450 (533)
+|+||++||||||+||||++||||||||||+||+|++|+.|++.|.+.+ ++++|+.+++.|++.|+++||+++ |.+|
T Consensus 158 iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~R 236 (702)
T PRK11092 158 IARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSGR 236 (702)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEec
Confidence 9999999999999999999999999999999999999999999998765 578999999999999999999996 9999
Q ss_pred ccchHHHHHHHHhcCCCCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeCCc
Q 009478 451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYERN 529 (533)
Q Consensus 451 ~Ks~ySI~~Km~rk~~~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~~~ 529 (533)
.|++||||+||++|+++|++|+|++|+||||++..|||++||+||++|+|+|++|||||++||+||||||||+|..+.+
T Consensus 237 ~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~v~g~~g 315 (702)
T PRK11092 237 EKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHG 315 (702)
T ss_pred cCCHHHHHHHHHHcCCChhHhccceeEEEEECCHHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987655
No 4
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-85 Score=670.25 Aligned_cols=361 Identities=62% Similarity=0.919 Sum_probs=341.0
Q ss_pred CCCcccccccccccccccccccCCCcchhhhhhhhhccccccCCCCcccccCCcccccCcchhhhhh-hhhccccccccc
Q 009478 130 SPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE-LTFNMEDNIVEG 208 (533)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 208 (533)
||||++.|+|+.. =||||||+|.|+||||+. +++|++| +.|.|+ .+
T Consensus 6 ~~pm~i~r~r~~~-------------~~~~~~rKae~~~v~~E~----------------~s~l~~ea~~~~me----ve 52 (543)
T KOG1157|consen 6 SPPMRISRDRNLD-------------GFNGFVRKAEGSCVDYEM----------------DSVLVDEALGFKME----VE 52 (543)
T ss_pred CCCCCCccccchh-------------hhcccCcccccccccccc----------------cccccccccCCcee----ee
Confidence 9999999999863 299999999999999992 2336778 899995 45
Q ss_pred hHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccCCC-cchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccc
Q 009478 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASG-DPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287 (533)
Q Consensus 209 ~~~~~~~~ll~~~~~~~~~~d~~~v~kA~~~A~~aH~GQ~RksG-ePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVED 287 (533)
...++.+++++.++.....++.+++.+|+.+|+.+|++|+|+++ +||++||+.+|.||+++++|+.+++||+|||||||
T Consensus 53 ~~~~~~r~~eR~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDD 132 (543)
T KOG1157|consen 53 LVGPYARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDD 132 (543)
T ss_pred ehhhhhhhhhhhhhhhhhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999999999999999965 59999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhChhHHHHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhccCceeehhhhhhhhhccccccCCCH
Q 009478 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (533)
Q Consensus 288 T~vTleeI~e~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAmaD~RAvLIKLADRLhNMrtL~~l~~ 367 (533)
|.+++++|++.||.+|++||++||+++.+++.+|.++ .|.+.++ |++++++.||+||||||+|||||+|..+||
T Consensus 133 t~~S~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-----~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpP 206 (543)
T KOG1157|consen 133 TFMSYEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-----TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPP 206 (543)
T ss_pred ccCCHHHHHHHhCccHHHHHHHHhcccchhHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Confidence 9999999999999999999999999999999888754 2456665 778889999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCcccccc
Q 009478 368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVL 447 (533)
Q Consensus 368 ekq~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~~e~~I~~~~~~L~~~L~~~gI~~~~V 447 (533)
-+|+++++|++.||+|+|+++|++.++.+||+|||+|++|-+|..+..+|+..+++++|+..+++|+++|..+||.++.|
T Consensus 207 vgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i 286 (543)
T KOG1157|consen 207 VGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVI 286 (543)
T ss_pred chhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cccccchHHHHHHHHhcCCCCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeC
Q 009478 448 CGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYE 527 (533)
Q Consensus 448 ~gR~Ks~ySI~~Km~rk~~~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~ 527 (533)
+||.|++||||+||.|++++.++|+||.|+|+||+++.|||+++|+||++|..+|++.||||++||.||||||||+|.++
T Consensus 287 ~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~d 366 (543)
T KOG1157|consen 287 KGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDNESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMVD 366 (543)
T ss_pred ecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcCchHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 009478 528 RN 529 (533)
Q Consensus 528 ~~ 529 (533)
+.
T Consensus 367 ~~ 368 (543)
T KOG1157|consen 367 GT 368 (543)
T ss_pred Cc
Confidence 65
No 5
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=2.9e-80 Score=689.63 Aligned_cols=287 Identities=44% Similarity=0.702 Sum_probs=274.4
Q ss_pred HHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhcccccCCCCHHHHHHHhChhHHHHHHhhhcccc
Q 009478 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (533)
Q Consensus 236 A~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVEDT~vTleeI~e~FG~eVA~LV~gVTKl~~ 315 (533)
|+.||.++|.||+|++|+||+.||++||.+|+++++|+++++||||||++|||++|.++|++.||++|+++|++|||++.
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~ 80 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITK 80 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHhhccccchHHHHHHHHHHHHhcc-CceeehhhhhhhhhccccccCCCHHHHHHHHhhhhhhhhchhcccCchhHH
Q 009478 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394 (533)
Q Consensus 316 l~~~~r~~~~~~~~~qae~lRkmLLAma-D~RAvLIKLADRLhNMrtL~~l~~ekq~r~A~ETl~IYAPLA~RLGi~~iK 394 (533)
+.+..+ +..|++++|+||++|+ |+||++|||||||||||+|..+++++|+++|+||+++|||||+||||++||
T Consensus 81 ~~~~~~------~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik 154 (683)
T TIGR00691 81 LKKKSR------QELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIK 154 (683)
T ss_pred cccchh------hHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 764222 2357899999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCCCCcCC
Q 009478 395 VQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIH 472 (533)
Q Consensus 395 ~ELEDL~fr~L~P~~y~~I~~~L~~~~--~e~~I~~~~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~~~~~I~ 472 (533)
||||||||+||+|++|+.|++.|.+.+ ++.+++.+.+.|++.|.+.||++. |++|.|++||||+||++|+.+|++|+
T Consensus 155 ~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k~~~~~~i~ 233 (683)
T TIGR00691 155 TELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRKGQNFDEIH 233 (683)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhcCCCHHHcc
Confidence 999999999999999999999998875 578999999999999999999985 99999999999999999999999999
Q ss_pred cceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeCCc
Q 009478 473 DIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYERN 529 (533)
Q Consensus 473 Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~~~ 529 (533)
|++|+||||++..|||++||+||+.|+|+|++|||||++||+||||||||+|..+++
T Consensus 234 Di~~~RIi~~~~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g 290 (683)
T TIGR00691 234 DLLAIRIIVKSELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKG 290 (683)
T ss_pred cceeEEEEECCHHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999998665
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=2.1e-39 Score=299.79 Aligned_cols=152 Identities=49% Similarity=0.727 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhcccccCCCCHHHHHHHhChhHHHHHHhhhcccc
Q 009478 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (533)
Q Consensus 236 A~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVEDT~vTleeI~e~FG~eVA~LV~gVTKl~~ 315 (533)
|+.||.++|.||++++|+||+.||++||.+|.++|.|+++++||||||++||+..+ ++|++.||++|+++|.++|+++.
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999666 99999999999999999999998
Q ss_pred cchHHhhccccchHHHHHHHHHHHHhcc-CceeehhhhhhhhhccccccCCCHHHHHHHHhhhhhhhhchhcccCch
Q 009478 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391 (533)
Q Consensus 316 l~~~~r~~~~~~~~~qae~lRkmLLAma-D~RAvLIKLADRLhNMrtL~~l~~ekq~r~A~ETl~IYAPLA~RLGi~ 391 (533)
+..... ......+.+++|+||+++. |+++++||||||+|||+++...++++++++|+||+++|+|||+|||||
T Consensus 80 ~~~~~~---~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 80 LSKKPW---EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp S-HH------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc---hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 876511 1123567899999999995 899999999999999999998999999999999999999999999997
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.85 E-value=2.8e-21 Score=173.62 Aligned_cols=100 Identities=38% Similarity=0.664 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCc---ccccccccccchHHHHHHHHhcCCCC---CcCCcceEEEEEeCChHHHHHHHHHHHhccCCC
Q 009478 428 SAIEKLEQALKDKNI---SFLVLCGRHKSLYSIHCKMLKKKLTM---DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (533)
Q Consensus 428 ~~~~~L~~~L~~~gI---~~~~V~gR~Ks~ySI~~Km~rk~~~~---~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~ 501 (533)
.+...|.+.|++.++ .+ .|.+|+|++.|+++||++++.+. ++|+|++|+||||++.+|||+++++|++.|++.
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~-~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~~~d~~~v~~~l~~~f~~~ 80 (129)
T cd05399 2 AALEEIADLLRDAGIIGRVA-SVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLFVDDCYRVLDLLHSLFKVI 80 (129)
T ss_pred hHHHHHHHHHHHcCCCCCCc-EEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeCHHHHHHHHHHHHhCCccc
Confidence 345677888888888 55 59999999999999999997776 899999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCceeEEEEEeCC
Q 009478 502 PGKMKDYITRPKFNGYIFSQVVLSYER 528 (533)
Q Consensus 502 p~r~kDYIa~PK~NGYrSLHtiV~~~~ 528 (533)
|++++|||++||+|||||+|++|..+.
T Consensus 81 ~~~~~D~~~~p~~~GYrslH~~~~~~~ 107 (129)
T cd05399 81 PGRVKDYIAEPKENGYQSLHLVVRGPE 107 (129)
T ss_pred CccccCCcCCCCCCCceEEEEEEEcCC
Confidence 999999999999999999999999876
No 8
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.76 E-value=9.4e-19 Score=172.39 Aligned_cols=86 Identities=30% Similarity=0.383 Sum_probs=79.3
Q ss_pred cccccccccchHHHHHHHHhcCCCC------CcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCC
Q 009478 444 FLVLCGRHKSLYSIHCKMLKKKLTM------DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517 (533)
Q Consensus 444 ~~~V~gR~Ks~ySI~~Km~rk~~~~------~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGY 517 (533)
.++|++|+|++.||..|++|||+++ +.|+||+|+||+|.+.+|.|.+..++.+.........||||.+||+|||
T Consensus 52 ie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F~~DI~~v~~~l~~~~d~~iv~~kDyi~n~k~~GY 131 (231)
T COG2357 52 IEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQFVDDIYRVVDLLKSRKDFTIVEEKDYIRNPKPNGY 131 (231)
T ss_pred hHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeehHhhHHHHHHHHhcccCccchhHHHHHhCCCCCCC
Confidence 4569999999999999999999543 6799999999999999999999999999887777899999999999999
Q ss_pred ceeEEEEEeCCc
Q 009478 518 IFSQVVLSYERN 529 (533)
Q Consensus 518 rSLHtiV~~~~~ 529 (533)
||+|++|.+|-.
T Consensus 132 RS~Hlive~pv~ 143 (231)
T COG2357 132 RSYHLILEVPVF 143 (231)
T ss_pred ceEEEEEeccch
Confidence 999999999865
No 9
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.76 E-value=4.7e-19 Score=155.58 Aligned_cols=76 Identities=36% Similarity=0.582 Sum_probs=67.4
Q ss_pred ccccchHHHHHHHHhcCC---CCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEE
Q 009478 449 GRHKSLYSIHCKMLKKKL---TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVL 524 (533)
Q Consensus 449 gR~Ks~ySI~~Km~rk~~---~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV 524 (533)
+|+|+++|+++|+.|++. .+++|+|++|+||||.+.+|||.++++|++.|.+.+.+++|||+.||.|||||+|++|
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~GYrs~H~~v 79 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNGYRSLHYIV 79 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS--EEEEEE
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHHHHHHHHHHHHHcCCcccccccccccccccCCcEeeEeee
Confidence 699999999999999864 7899999999999999999999999999999999999999999999999999999999
No 10
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.30 E-value=1.5e-06 Score=83.87 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=57.0
Q ss_pred hcCCccCCCc--chhHHHHHHHHHHHHcCCCHHHHHHHhhhcc---cccCCC--------------CHHHHHHHhChhHH
Q 009478 244 HRGQMRASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAFL--------------SYDYIFRTFGAGVA 304 (533)
Q Consensus 244 H~GQ~RksGe--PYI~HpleVA~iLa~lg~D~~tIaAALLHDv---VEDT~v--------------TleeI~e~FG~eVA 304 (533)
+.|+..-+|+ |++.|++++|.+....|.|++.|+||||||+ ++|+.. ..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 3344444564 7999999999988899999999999999998 776532 25778888999999
Q ss_pred HHHHhhhccc
Q 009478 305 DLVEGVSKLS 314 (533)
Q Consensus 305 ~LV~gVTKl~ 314 (533)
.+|..-..-+
T Consensus 93 ~lV~~Hv~aK 102 (179)
T TIGR03276 93 EPIRLHVQAK 102 (179)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 11
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=94.76 E-value=0.025 Score=47.28 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=29.3
Q ss_pred CcchhHHHHHHHHHHHHcC------CCHHHHHHHhhhcccccCC
Q 009478 252 GDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDAF 289 (533)
Q Consensus 252 GePYI~HpleVA~iLa~lg------~D~~tIaAALLHDvVEDT~ 289 (533)
+++.+.|.+.|+.+...+. .......||||||+-+...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 4678899999998887543 3456889999999977543
No 12
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=93.29 E-value=0.43 Score=48.01 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH--------cCCCHH-HHHHHhhhcccc-cCCCCHHHHH
Q 009478 227 IFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA--------IGANST-VVAAGLLHDTLD-DAFLSYDYIF 296 (533)
Q Consensus 227 ~~d~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~--------lg~D~~-tIaAALLHDvVE-DT~vTleeI~ 296 (533)
+-|..++++|.+++.+... ..-+.|.++|...... ++.|.+ ..+||||||+.. +.......+.
T Consensus 35 iPdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~~ 107 (228)
T TIGR03401 35 LPDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKMS 107 (228)
T ss_pred CCChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccCC
Confidence 3477788889999877643 2446899999653332 356665 558999999865 2222111111
Q ss_pred -HHhChhHH-HHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhc------c--Cceeehhhhhhhhhcccc-ccCC
Q 009478 297 -RTFGAGVA-DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM------A--DARAVLIKLADRLHNMMT-LDAL 365 (533)
Q Consensus 297 -e~FG~eVA-~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAm------a--D~RAvLIKLADRLhNMrt-L~~l 365 (533)
+..|...+ +++...+ +.+. .+.+.+...+... . ++.+.+|..||+++++-. ...+
T Consensus 108 fe~~ga~~A~~~L~~~~---G~~~-----------~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~~ 173 (228)
T TIGR03401 108 FEFYGGILALDVLKEQT---GANQ-----------DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDLV 173 (228)
T ss_pred HHHHHHHHHHHHHHHCC---CCCH-----------HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhhC
Confidence 12333322 2222221 1111 0112222111111 1 346889999999999853 4456
Q ss_pred CHHHHHHHH
Q 009478 366 PLCKRQRFA 374 (533)
Q Consensus 366 ~~ekq~r~A 374 (533)
+++.+..+.
T Consensus 174 ~~~~~~~v~ 182 (228)
T TIGR03401 174 HPDTVDAVN 182 (228)
T ss_pred CHHHHHHHH
Confidence 776665433
No 13
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=90.87 E-value=1.9 Score=46.09 Aligned_cols=74 Identities=22% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccccCCCC------HHHHHHH--
Q 009478 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDAFLS------YDYIFRT-- 298 (533)
Q Consensus 232 ~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVEDT~vT------leeI~e~-- 298 (533)
..++|+++-.+.+. .+..+.|.++|+.+... ++.|.+ .++||||||+-...... -.++.+.
T Consensus 171 ~~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G 244 (339)
T PRK12703 171 DEDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKEN 244 (339)
T ss_pred CHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCC
Confidence 34555555444322 22357899999876443 566765 45679999996543211 1234333
Q ss_pred hChhHHHHHHhhh
Q 009478 299 FGAGVADLVEGVS 311 (533)
Q Consensus 299 FG~eVA~LV~gVT 311 (533)
|.++|+++|+...
T Consensus 245 ~~e~i~~iIe~H~ 257 (339)
T PRK12703 245 IDDRVVSIVERHI 257 (339)
T ss_pred CCHHHHHHHHHHh
Confidence 5578888887654
No 14
>PRK10119 putative hydrolase; Provisional
Probab=87.45 E-value=3.2 Score=42.00 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccc
Q 009478 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 232 ~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVE 286 (533)
.+.++..|..+...+. .+|.. +.|..+|...... -+.|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 4455566666554442 22322 5677777544333 355654 668999999975
No 15
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=85.06 E-value=0.46 Score=40.27 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHcCCC------H-HHHHHHhhhcccccC
Q 009478 256 LLHCVETAMLLAAIGAN------S-TVVAAGLLHDTLDDA 288 (533)
Q Consensus 256 I~HpleVA~iLa~lg~D------~-~tIaAALLHDvVEDT 288 (533)
+.|.+.|+.+...+... . ...+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 67999999887764322 2 377999999987654
No 16
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=84.39 E-value=3.2 Score=39.48 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=35.2
Q ss_pred cchhHHHHHHHHHHHH----cC-----CCH-HHHHHHhhhcccccCCC--C----HHHHHHH--hChhHHHHHHh
Q 009478 253 DPYLLHCVETAMLLAA----IG-----ANS-TVVAAGLLHDTLDDAFL--S----YDYIFRT--FGAGVADLVEG 309 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg-----~D~-~tIaAALLHDvVEDT~v--T----leeI~e~--FG~eVA~LV~g 309 (533)
...+.|.+.|+.+... ++ .|. ...+||||||+-..... . -.+|.+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567899999875432 44 443 56789999998763221 1 1234344 45678888864
No 17
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=82.02 E-value=2.1 Score=42.90 Aligned_cols=52 Identities=27% Similarity=0.236 Sum_probs=36.7
Q ss_pred CCcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccccCCCCH--------HHHHHHhChh
Q 009478 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDDAFLSY--------DYIFRTFGAG 302 (533)
Q Consensus 251 sGePYI~HpleVA~iLa----~lg~D~~-tIaAALLHDvVEDT~vTl--------eeI~e~FG~e 302 (533)
+|..-+.|+++||.+.. +.|.|.+ +..||||||+..-..... .++.+.|+..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~~~ 97 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFLED 97 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHccc
Confidence 67778999999987554 3578876 557889999987544332 2566666655
No 18
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=80.91 E-value=1.7 Score=42.15 Aligned_cols=34 Identities=47% Similarity=0.694 Sum_probs=29.2
Q ss_pred CCcch--hHHHHHHHHHHHHcCCCHHHHHHHhhhcc
Q 009478 251 SGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 284 (533)
Q Consensus 251 sGePY--I~HpleVA~iLa~lg~D~~tIaAALLHDv 284 (533)
+|+|- ..|.++.|.+...-|.+.+.|+||||||+
T Consensus 25 ~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 25 SGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred ccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 66764 57999999877778999999999999996
No 19
>PRK14707 hypothetical protein; Provisional
Probab=79.88 E-value=8 Score=49.74 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=63.3
Q ss_pred cccccccchHHHHHHHHh----cCCCC----CcCCcceEEEEEeCC---hHHHHHHHHHHHhc-cCCCCCcccccccCCC
Q 009478 446 VLCGRHKSLYSIHCKMLK----KKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPK 513 (533)
Q Consensus 446 ~V~gR~Ks~ySI~~Km~r----k~~~~----~~I~Di~giRIIv~~---~~dCY~vl~~vh~~-~~p~p~r~kDYIa~PK 513 (533)
-...|+|+.-|+.+|+.. +++++ ..|.|.+-.-||++. ...+..+++.+... |..+ +++++- ..+
T Consensus 2306 GLe~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~~Fva~~r~Il~aL~~qGy~~v--kvkN~F-~~~ 2382 (2710)
T PRK14707 2306 GTQHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQGFTAGLRAVLAALDDQGHARV--KLTNQF-TEY 2382 (2710)
T ss_pred chHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCchhHHHHHHHHHHHHHHcCCeEE--EEeecc-cCC
Confidence 367899999999999963 45665 569999888899986 45777777766654 4443 788887 444
Q ss_pred CCCCceeEEEEEeCCcee
Q 009478 514 FNGYIFSQVVLSYERNIL 531 (533)
Q Consensus 514 ~NGYrSLHtiV~~~~~~~ 531 (533)
.++|..+++++..++++.
T Consensus 2383 ~~~YkGINvtL~~pdG~~ 2400 (2710)
T PRK14707 2383 SPSFKAINLTLRSPEGAL 2400 (2710)
T ss_pred CCCccceEEEEEcCCCcE
Confidence 589999999998877653
No 20
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=78.79 E-value=1.5 Score=37.11 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHcCC--------CHHHHHHHhhhcccccC
Q 009478 254 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 288 (533)
Q Consensus 254 PYI~HpleVA~iLa~lg~--------D~~tIaAALLHDvVEDT 288 (533)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999887765422 34678999999998864
No 21
>PRK03826 5'-nucleotidase; Provisional
Probab=71.35 E-value=9.9 Score=37.52 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHHH--------cC--CCH-HHHHHHhhhccccc
Q 009478 253 DPYLLHCVETAMLLAA--------IG--ANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 253 ePYI~HpleVA~iLa~--------lg--~D~-~tIaAALLHDvVED 287 (533)
+.--.|-+.||.+.-. .| .|. .++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 4456899999876432 22 344 46778999999993
No 22
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=67.70 E-value=8.7 Score=30.36 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhcccc
Q 009478 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLD 286 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVE 286 (533)
.+-..|.+.|+..... ++.|. ....||||||+=.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 3446788888776553 45665 4678999999744
No 23
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=61.17 E-value=4.5 Score=44.43 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHc----CC--CH--------HHHHHHhhhcc
Q 009478 255 YLLHCVETAMLLAAI----GA--NS--------TVVAAGLLHDT 284 (533)
Q Consensus 255 YI~HpleVA~iLa~l----g~--D~--------~tIaAALLHDv 284 (533)
-+.|++.|..+...+ +. ++ .+.+||||||+
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 378999998766643 21 11 48899999996
No 24
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=60.39 E-value=10 Score=37.42 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhcccccCC
Q 009478 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDDAF 289 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVEDT~ 289 (533)
++-+.|+++||....+ ++.|. ..-+||+|||.-.+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 4568999999886654 46775 4779999999887654
No 25
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=57.35 E-value=21 Score=35.16 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCcchhHHHHHHHHHHH-------HcC--CC-HHHHHHHhhhccccc--CCCC--HHHHHHHhChhHHHHHHhhhcccc-
Q 009478 251 SGDPYLLHCVETAMLLA-------AIG--AN-STVVAAGLLHDTLDD--AFLS--YDYIFRTFGAGVADLVEGVSKLSQ- 315 (533)
Q Consensus 251 sGePYI~HpleVA~iLa-------~lg--~D-~~tIaAALLHDvVED--T~vT--leeI~e~FG~eVA~LV~gVTKl~~- 315 (533)
.++.-..|-+.||.+-- ..| .+ ...+..||+||.-|- ++++ ............-+..+.+.+..-
T Consensus 30 ~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~~ 109 (193)
T COG1896 30 NPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFG 109 (193)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcccC
Confidence 45666778777765332 223 24 357888999999995 3333 112222222222222333322211
Q ss_pred cchHHhhccccchHHHHHHHHHHHHhccCceeehhhhhhhhhcc
Q 009478 316 LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359 (533)
Q Consensus 316 l~~~~r~~~~~~~~~qae~lRkmLLAmaD~RAvLIKLADRLhNM 359 (533)
++. .. .+-++.. +.-.+..+.+||.||++..+
T Consensus 110 ~p~----------e~-~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 110 LPE----------EL-LELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred CcH----------HH-HHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 010 00 1112221 22247889999999999987
No 26
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=55.85 E-value=13 Score=34.82 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhcccc
Q 009478 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLD 286 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVE 286 (533)
+.-+.|.+.||.+... ++.|+ ..-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3457899999875543 45654 5778999999876
No 27
>PRK14136 recX recombination regulator RecX; Provisional
Probab=54.87 E-value=8.4 Score=40.75 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=54.8
Q ss_pred HhhhcCChhHH--HHHHHHHHHHh-hhhhhhHHHHHHHHH--HHhcCccccccccc--ccchHHHHHHHHhcCCCCCcCC
Q 009478 400 LCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQA--LKDKNISFLVLCGR--HKSLYSIHCKMLKKKLTMDEIH 472 (533)
Q Consensus 400 L~fr~L~P~~y--~~I~~~L~~~~-~e~~I~~~~~~L~~~--L~~~gI~~~~V~gR--~Ks~ySI~~Km~rk~~~~~~I~ 472 (533)
.|+.||--..| .+|.++|.... .+..|+.+++.|++. |++.-.--..|..| .|...-|-.+|++||++-+-|.
T Consensus 167 kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIE 246 (309)
T PRK14136 167 RALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVE 246 (309)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHH
Confidence 34455544444 45666665542 344556666555431 11111000012222 2567789999999999866666
Q ss_pred cceEEEEEeCChHHHHHHHHHHHhccCCCCC
Q 009478 473 DIYGLRLIVENEEDCYQALRVVHQLWAEVPG 503 (533)
Q Consensus 473 Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~ 503 (533)
+.+. .+ .+++.-.+..++.+.|...+.
T Consensus 247 qALe--ei--eEDE~E~A~~L~eKK~~~~~~ 273 (309)
T PRK14136 247 SVGA--QL--RETEFERAQAVWRKKFGALPQ 273 (309)
T ss_pred HHHH--hc--cHhHHHHHHHHHHHHhcccCc
Confidence 6544 11 345666778888888865543
No 28
>PRK14137 recX recombination regulator RecX; Provisional
Probab=54.86 E-value=14 Score=36.44 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=65.8
Q ss_pred hHHHHHHHHhhhcCChhHH--HHHHHHHHHHh-hhhhhhHHHHHHHHH--HHhcCc--ccccccccccchHHHHHHHHhc
Q 009478 392 TWKVQLENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQA--LKDKNI--SFLVLCGRHKSLYSIHCKMLKK 464 (533)
Q Consensus 392 ~iK~ELEDL~fr~L~P~~y--~~I~~~L~~~~-~e~~I~~~~~~L~~~--L~~~gI--~~~~V~gR~Ks~ySI~~Km~rk 464 (533)
+....+.+.|+++|--..| .+|.++|.... ++..|+.+++.|.+. |++.-. .+ ...+-+.+.-|-.+|++|
T Consensus 37 e~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~~--~~~k~~Gp~rI~~eL~qK 114 (195)
T PRK14137 37 EAREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARAE--NSRRGVGALRVRQTLRRR 114 (195)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHhcCchHHHHHHHHHHc
Confidence 4556677777777766666 46777776543 456677777766532 222110 01 123456788899999999
Q ss_pred CCCCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCC
Q 009478 465 KLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (533)
Q Consensus 465 ~~~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~ 501 (533)
|++-+-|.+.+.- ++..++.-.+..++.+.|...
T Consensus 115 GI~~~lI~~al~~---~d~ede~e~a~~l~~KK~~~~ 148 (195)
T PRK14137 115 GVEETLIEETLAA---RDPQEEQQEARNLLERRWSSF 148 (195)
T ss_pred CCCHHHHHHHHHh---cCchhHHHHHHHHHHHhcccc
Confidence 9986666655431 133456667788888888654
No 29
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=52.86 E-value=15 Score=36.96 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHHHHc-------C--CCH-HHHHHHhhhcccccC------CCCHHHHHHHhChhHHHHHHhhhccccc
Q 009478 253 DPYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDDA------FLSYDYIFRTFGAGVADLVEGVSKLSQL 316 (533)
Q Consensus 253 ePYI~HpleVA~iLa~l-------g--~D~-~tIaAALLHDvVEDT------~vTleeI~e~FG~eVA~LV~gVTKl~~l 316 (533)
+.--.|.+.||.+..-+ | .|. .....||.||..|-- ++- .+.++...++..|-+...-
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVK------y~tPelr~~~~~VE~~m~~ 101 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVK------YATPELREMLAQVEEEMTE 101 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SS------SS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCccc------ccCHHHHHHHHHHHHHHHH
Confidence 34457999888765433 3 244 455889999999952 221 1233333333333332111
Q ss_pred chHHhhccccchHHHHHHHHHHHHhccC--ceeehhhhhhhhhcc
Q 009478 317 SKLARENNTASKTVEADRLHTMFLAMAD--ARAVLIKLADRLHNM 359 (533)
Q Consensus 317 ~~~~r~~~~~~~~~qae~lRkmLLAmaD--~RAvLIKLADRLhNM 359 (533)
..+... .....| +.++.++.--.| ....+||.||.++-+
T Consensus 102 ~~i~~~---iP~e~q-~~Y~~~l~E~KDdt~EG~Iv~~ADkidal 142 (215)
T PF12917_consen 102 NFIKKE---IPEEFQ-EAYRRRLKEGKDDTLEGQIVKAADKIDAL 142 (215)
T ss_dssp HHHHHH---S-GGGH-HHHHHHHS---SSSHHHHHHHHHHHHHHH
T ss_pred HHHHhh---CCHHHH-HHHHHHhhcCCcccHHHHHHHHHHHHHHH
Confidence 100000 000112 334555443333 678999999999866
No 30
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=51.19 E-value=9 Score=36.47 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHHH---H-cC--CCH-HHHHHHhhhccccc--CCCCHHH--HHHHhChhHHHHHHhhhcccccchHHh
Q 009478 253 DPYLLHCVETAMLLA---A-IG--ANS-TVVAAGLLHDTLDD--AFLSYDY--IFRTFGAGVADLVEGVSKLSQLSKLAR 321 (533)
Q Consensus 253 ePYI~HpleVA~iLa---~-lg--~D~-~tIaAALLHDvVED--T~vTlee--I~e~FG~eVA~LV~gVTKl~~l~~~~r 321 (533)
+.--.|...||.+.. . .+ .|. .++..+|+||+.|- ++++.-. ..+.+-..-...++.+... ++.
T Consensus 21 EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~--- 95 (165)
T PF13023_consen 21 ESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE--- 95 (165)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC---
T ss_pred ccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh---
Confidence 455679999887543 2 33 554 58888899999994 3444322 1111222222233322221 111
Q ss_pred hccccchHHHHHHHHHHHHhc---cCceeehhhhhhhhhccc
Q 009478 322 ENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (533)
Q Consensus 322 ~~~~~~~~~qae~lRkmLLAm---aD~RAvLIKLADRLhNMr 360 (533)
...+.++.++.-. ..+.+.+||.+|+|.-+-
T Consensus 96 --------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 --------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp --------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 0123344444322 378899999999998663
No 31
>PRK00106 hypothetical protein; Provisional
Probab=49.62 E-value=18 Score=41.00 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.4
Q ss_pred CCcchhHHHHHHHHHHH----HcCCC-HHHHHHHhhhccccc
Q 009478 251 SGDPYLLHCVETAMLLA----AIGAN-STVVAAGLLHDTLDD 287 (533)
Q Consensus 251 sGePYI~HpleVA~iLa----~lg~D-~~tIaAALLHDvVED 287 (533)
.|...+.|.++||.+.. .+|+| ...-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 46677899999988643 46887 457789999997655
No 32
>PRK09169 hypothetical protein; Validated
Probab=49.22 E-value=48 Score=43.44 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=64.5
Q ss_pred HHHHHHHhcCcccccccccccchHHHHHHHH----hcCCCC----CcCCcceEEEEEeCC---hHHHHHHHHHHHhc-cC
Q 009478 432 KLEQALKDKNISFLVLCGRHKSLYSIHCKML----KKKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WA 499 (533)
Q Consensus 432 ~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~----rk~~~~----~~I~Di~giRIIv~~---~~dCY~vl~~vh~~-~~ 499 (533)
.|+......+..-.....|+|+.-|+.+|+. ++++++ ..|.|.+-.=|+.+. ...+..+++.+... |.
T Consensus 1901 ~L~s~a~~~g~~L~Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~~ 1980 (2316)
T PRK09169 1901 MLRAAIEGIGGQLRGLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQTFVAGYRRILGALDEQGHT 1980 (2316)
T ss_pred HHHHHHHHhcCCccchHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCccHHHHHHHHHHHHHhCCCe
Confidence 3444444333322347889999999999997 456665 469998777777775 45677777777654 44
Q ss_pred CCCCcccccccCCCCCCCceeEEEE-EeCCce
Q 009478 500 EVPGKMKDYITRPKFNGYIFSQVVL-SYERNI 530 (533)
Q Consensus 500 p~p~r~kDYIa~PK~NGYrSLHtiV-~~~~~~ 530 (533)
.+ +++++-..+ .++|+.+|+++ ...+++
T Consensus 1981 ~V--kv~N~F~~~-~~~YkGVNv~l~~s~~g~ 2009 (2316)
T PRK09169 1981 RT--RVTNHFKKR-GPAFKGINVTLDATGEGV 2009 (2316)
T ss_pred EE--EEEeeeccC-CCCccceEEeeecCCCCc
Confidence 43 667755444 49999999999 444443
No 33
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=48.61 E-value=1.1e+02 Score=30.24 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=18.7
Q ss_pred hhhhhhhch----------hcccCchhHHHH--------HHHHhhhcCChh
Q 009478 376 ETLEIFVPL----------ANRLGISTWKVQ--------LENLCFKHLNPD 408 (533)
Q Consensus 376 ETl~IYAPL----------A~RLGi~~iK~E--------LEDL~fr~L~P~ 408 (533)
|--++|+|. |..+|+..+... ++..+-.|++|+
T Consensus 90 elEdlY~PyK~kr~T~A~~Are~GLeplA~~il~~~~~~~~~~a~~~v~~~ 140 (193)
T PF09371_consen 90 ELEDLYLPYKPKRKTRATIAREAGLEPLADKILEQPESDPEVEAKKFVNEE 140 (193)
T ss_dssp HHHHHHGGGS---S-HHHHHHHTTTHHHHHHHHH-TTS-HHHHHHTT-BGG
T ss_pred HHHHHHhhhccCcCCHHHHHHHcCCHHHHHHHHcCCccchHHHHHHHhCcc
Confidence 444666664 666777655443 344556666665
No 34
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=48.52 E-value=28 Score=35.89 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHH-HHHHHhhhcc
Q 009478 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANST-VVAAGLLHDT 284 (533)
Q Consensus 232 ~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~-tIaAALLHDv 284 (533)
.|.+|+++....-..--.....|-|.|++++|+.+..-..+++ ...+||+||.
T Consensus 40 ti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 40 TIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp -HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred eHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 4666766655544322223567999999999999987645555 4579999995
No 35
>PRK14707 hypothetical protein; Provisional
Probab=47.70 E-value=1.1e+02 Score=40.20 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=98.4
Q ss_pred hhhcc----cc--ccCCCHHHHHHHHhhhhhhhhchhcccCchh---HHHHHHHHhhhcCChhHHH----------HHHH
Q 009478 355 RLHNM----MT--LDALPLCKRQRFAKETLEIFVPLANRLGIST---WKVQLENLCFKHLNPDQHT----------ELSS 415 (533)
Q Consensus 355 RLhNM----rt--L~~l~~ekq~r~A~ETl~IYAPLA~RLGi~~---iK~ELEDL~fr~L~P~~y~----------~I~~ 415 (533)
++|++ +. +...++++++.+-.+..+.|....-=-|... |..|=-...+. ..|..-. .. .
T Consensus 2416 r~HdLYKQ~q~L~lqGAs~~~~ral~a~a~e~f~aVp~P~Gce~I~dW~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 2493 (2710)
T PRK14707 2416 RFHDLYKRTHALALGGASRAEQRTLQAPALEAFKRVASPPGCEEIDDWQEETVPALAG-TPPALASEQTPVNAGASPA-H 2493 (2710)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccCcccCcC-CCCccccccccccccccHH-H
Confidence 56766 22 4567888888888888888888766555543 32221111111 1121111 00 1
Q ss_pred HHHHH--hhhh----hhhHHHHHHHHHHHhcCcccccccccc---------cchHHHHHHHHhc---CCCC----CcCCc
Q 009478 416 KLVEC--FDEA----MVTSAIEKLEQALKDKNISFLVLCGRH---------KSLYSIHCKMLKK---KLTM----DEIHD 473 (533)
Q Consensus 416 ~L~~~--~~e~----~I~~~~~~L~~~L~~~gI~~~~V~gR~---------Ks~ySI~~Km~rk---~~~~----~~I~D 473 (533)
+|... .-|. .++.+...+...|...+ .+..-.||. |+..||.+|+.+. +++. ..|.|
T Consensus 2494 r~~~~a~~~~~~v~p~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ks~~Si~RKI~~~~~~~ls~eqAaarVrD 2572 (2710)
T PRK14707 2494 RVFNAATGKQASLTPVLNTLADGLGARLWGNV-RYKASQGRIEQVQQAPFQKSLASIKDKIRRHLRAGMTAEQATQSVGD 2572 (2710)
T ss_pred HHHHHhhhcccccChHHHHHHHHhhhhhcccC-ccccccchhhhhhhcccCCCHHHHHHHHHHHHhcCCCHHHHHHHhhh
Confidence 22111 0121 23333333443443322 221234555 9999999999753 5553 56999
Q ss_pred ceEEEEEeCCh---HHHHHHHHHHHhc-cCCCCCcccccccCCCCCCCceeEEEEEeCCce
Q 009478 474 IYGLRLIVENE---EDCYQALRVVHQL-WAEVPGKMKDYITRPKFNGYIFSQVVLSYERNI 530 (533)
Q Consensus 474 i~giRIIv~~~---~dCY~vl~~vh~~-~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~~~~ 530 (533)
.+-.-||.+.+ ...+.+.+.+... |+.+ ++|++-..|. +.|..+-+++....++
T Consensus 2573 alRYtviLp~e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~d-~tY~GvN~~~r~~~g~ 2630 (2710)
T PRK14707 2573 ALRYALELPSEGFVAKVQAAQDALRRQGMTCV--NLQNYFTSGD-GTYRGINASFTDAEGY 2630 (2710)
T ss_pred heeEEEEcCcchHHHHHHHHHHHHHhcCCeEE--EeeccccCCC-CcccceeeeEEcCCCC
Confidence 98888888864 5666666666654 5554 8999985543 7799999999776653
No 36
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=46.90 E-value=44 Score=32.88 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHH---H-HcCCCHH-HHHHHhhhccccc-C--------CCCHHHHHHH-hChhHHHHHHhhhcccc
Q 009478 253 DPYLLHCVETAMLL---A-AIGANST-VVAAGLLHDTLDD-A--------FLSYDYIFRT-FGAGVADLVEGVSKLSQ 315 (533)
Q Consensus 253 ePYI~HpleVA~iL---a-~lg~D~~-tIaAALLHDvVED-T--------~vTleeI~e~-FG~eVA~LV~gVTKl~~ 315 (533)
+..+-||+.|+... + ++|-|++ --.+|||||.=-+ | -.+++-|++. ..++|++.|.+-.....
T Consensus 46 e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~~~ 123 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAYTG 123 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhhhc
Confidence 56788999886543 3 5888876 4578999996322 1 1344445443 77889988887655443
No 37
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=45.44 E-value=83 Score=27.81 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhhhhhchhcccC-----chhHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcC
Q 009478 367 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKN 441 (533)
Q Consensus 367 ~ekq~r~A~ETl~IYAPLA~RLG-----i~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~~e~~I~~~~~~L~~~L~~~g 441 (533)
++..+.++...-.-|-.+|.+|| +.. .+++.+..+|-.-..|..+-+.|..-...+--..-+..|-++|.+.+
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 45667777777777888999999 654 36677776665444565555555543321111233445555666666
Q ss_pred cc
Q 009478 442 IS 443 (533)
Q Consensus 442 I~ 443 (533)
++
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 54
No 38
>PRK12705 hypothetical protein; Provisional
Probab=45.29 E-value=61 Score=36.71 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=27.8
Q ss_pred CCcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhccccc
Q 009478 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (533)
Q Consensus 251 sGePYI~HpleVA~iLa----~lg~D~~-tIaAALLHDvVED 287 (533)
.|...+.|.++||.+.. .+|+|++ ...||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 45567899999988654 4677754 6689999998764
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=44.29 E-value=47 Score=37.59 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=26.4
Q ss_pred CCcchhHHHHHHHHHHH----HcCCCH-HHHHHHhhhccccc
Q 009478 251 SGDPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 251 sGePYI~HpleVA~iLa----~lg~D~-~tIaAALLHDvVED 287 (533)
.+...+.|.++||.+.. .+|+|+ ....||||||+=.-
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~ 373 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKA 373 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcC
Confidence 34457789999987543 367765 46689999997553
No 40
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=44.06 E-value=55 Score=36.99 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=25.7
Q ss_pred CcchhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccc
Q 009478 252 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 252 GePYI~HpleVA~iLa----~lg~D~~-tIaAALLHDvVE 286 (533)
|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3346789999988644 4688764 557999999854
No 41
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=43.00 E-value=25 Score=37.62 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccc
Q 009478 254 PYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 254 PYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVE 286 (533)
.-++|.++|+.+... ++.+++ +-+|||+||+=.
T Consensus 62 tR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiGh 99 (336)
T PRK01286 62 TRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLGH 99 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 347999999986554 566554 447899999754
No 42
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=41.52 E-value=26 Score=36.99 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhccccc
Q 009478 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVED 287 (533)
++...|.+.||.+... +|.|+ +.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 4567899999876543 46554 67789999998664
No 43
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=38.70 E-value=51 Score=36.48 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHhcCCccC--CC---cchhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccc
Q 009478 229 REDFVIKAFYEAERAHRGQMRA--SG---DPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 229 d~~~v~kA~~~A~~aH~GQ~Rk--sG---ePYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVE 286 (533)
|.++|...-.|-.-.++.|.-. .+ ..-++|.++||.+-.. ++.+++ +.+|||+||+=.
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 4566777777777778888643 22 2346899999987654 565544 568899999754
No 44
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.47 E-value=1.3e+02 Score=25.65 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=45.0
Q ss_pred CHHHHHHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCcc
Q 009478 366 PLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNIS 443 (533)
Q Consensus 366 ~~ekq~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~~e~~I~~~~~~L~~~L~~~gI~ 443 (533)
+.+.-..+|..--.=|-.||.+||+.. .+++.+-- -+|+.+....+.|..-....--....+.|.++|.+.|+.
T Consensus 6 t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~~--~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 6 TGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIES--DSEDIKMQAKQLLVAWQDREGSQATPETLITALNAAGLN 79 (86)
T ss_pred CHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHHh--cCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHHcCcH
Confidence 444445566666666888999999975 35555443 356667777777765442211123456677778777654
No 45
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=34.93 E-value=87 Score=30.76 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHH-HHHHHhhhcc
Q 009478 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANST-VVAAGLLHDT 284 (533)
Q Consensus 232 ~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~-tIaAALLHDv 284 (533)
.|.+|+++-...-...--.-.+|-|.|+++.|+.+..-..|.+ .-.+||+||.
T Consensus 74 ~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 74 TIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred eHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4666766655543221112358999999999998887555555 3478899984
No 46
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=32.04 E-value=1.8e+02 Score=31.24 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=68.7
Q ss_pred hcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHH--hh-------hhhhhHHHHHHHHHHHhcCcc------cccccc
Q 009478 385 ANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FD-------EAMVTSAIEKLEQALKDKNIS------FLVLCG 449 (533)
Q Consensus 385 A~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~--~~-------e~~I~~~~~~L~~~L~~~gI~------~~~V~g 449 (533)
.-|+|..---.|+-+.-.+...|+--..+....... .+ -..+..-.+.|.+.|++.++. ...|--
T Consensus 218 GlRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv 297 (356)
T COG0079 218 GLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLV 297 (356)
T ss_pred hhceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEE
Confidence 447887544456666666677776554444433221 11 123444556677778776522 112334
Q ss_pred cccc--hHHHHHHHHhcCCCCCcCCc--c--eEEEEEeCChHHHHHHHHHHHhcc
Q 009478 450 RHKS--LYSIHCKMLKKKLTMDEIHD--I--YGLRLIVENEEDCYQALRVVHQLW 498 (533)
Q Consensus 450 R~Ks--~ySI~~Km~rk~~~~~~I~D--i--~giRIIv~~~~dCY~vl~~vh~~~ 498 (533)
|.+. -..++++|.++|+=+.+..+ . ..+||.|.+.+++-+++..+.+..
T Consensus 298 ~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een~~ll~AL~~~~ 352 (356)
T COG0079 298 RVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVL 352 (356)
T ss_pred ECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 4443 44689999998864433322 2 269999999999999998887643
No 47
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=31.30 E-value=62 Score=35.18 Aligned_cols=58 Identities=22% Similarity=0.141 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHhcCCccCCC-----cchhHHHHHHHHHHHHc----CC-----------CH-HHHHHHhhhcccc
Q 009478 229 REDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAAI----GA-----------NS-TVVAAGLLHDTLD 286 (533)
Q Consensus 229 d~~~v~kA~~~A~~aH~GQ~RksG-----ePYI~HpleVA~iLa~l----g~-----------D~-~tIaAALLHDvVE 286 (533)
|.++|.....|=.-.++.|.-..+ ..-++|.++||.+...+ +. +. -+-+|||+||+=.
T Consensus 8 D~dRii~s~~frRL~~ktQv~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiGh 86 (381)
T TIGR01353 8 DYDRIIHSSAFRRLQDKTQVFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIGN 86 (381)
T ss_pred hHHHHhCCHHHhhhccCceeCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCCC
Confidence 344555555555555666654322 24478999999876643 32 22 3668899999744
No 48
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=30.51 E-value=49 Score=35.08 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHc-----CCCHH-HHHHHhhhccc
Q 009478 255 YLLHCVETAMLLAAI-----GANST-VVAAGLLHDTL 285 (533)
Q Consensus 255 YI~HpleVA~iLa~l-----g~D~~-tIaAALLHDvV 285 (533)
.+.|-++|+.++..+ .+|.+ .+++|+|||+=
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 578999999887764 35655 66778999975
No 49
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=30.47 E-value=3.2e+02 Score=28.18 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcCcc------cccccccccchHHHHHHHHhcCCCCCcCCcceEEEEEeC---ChHHHHHHHHHHHh
Q 009478 427 TSAIEKLEQALKDKNIS------FLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE---NEEDCYQALRVVHQ 496 (533)
Q Consensus 427 ~~~~~~L~~~L~~~gI~------~~~V~gR~Ks~ySI~~Km~rk~~~~~~I~Di~giRIIv~---~~~dCY~vl~~vh~ 496 (533)
.+..+.|++.|++.+.. ...|..+.+....+.++|.++|+-+.....-..+||.+. +.+|+-+++..+.+
T Consensus 294 ~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 294 MENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 33444555566554432 113555667667899999888765443322347999995 78999998888754
No 50
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=29.64 E-value=37 Score=37.50 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHhcCCccC-C-C---cchhHHHHHHHHHHHH----c-C---------C-CHH-HHHHHhhhcccc
Q 009478 229 REDFVIKAFYEAERAHRGQMRA-S-G---DPYLLHCVETAMLLAA----I-G---------A-NST-VVAAGLLHDTLD 286 (533)
Q Consensus 229 d~~~v~kA~~~A~~aH~GQ~Rk-s-G---ePYI~HpleVA~iLa~----l-g---------~-D~~-tIaAALLHDvVE 286 (533)
|.++|...-.|=.-.++.|.-. . + ..-++|.++||.+... + + . +.+ +-+|||+||+=.
T Consensus 28 D~dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGh 106 (432)
T PRK05318 28 DRARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGH 106 (432)
T ss_pred HHHHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCC
Confidence 4455555555555566667422 1 1 2336899999887654 3 1 1 344 348899999754
No 51
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=25.97 E-value=7.8e+02 Score=29.60 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=44.0
Q ss_pred hccCceeehhhhhhhhhccccccCCCHHHHHHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 009478 341 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC 420 (533)
Q Consensus 341 AmaD~RAvLIKLADRLhNMrtL~~l~~ekq~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~ 420 (533)
.+.++. ||||.+.+...+ +.+..+.+ .|+.++---|-.-| .-++.|++.+- ++-+.-.++++.+++.
T Consensus 159 ~i~~~~----klad~iaa~l~~---~~~~kQ~i-Le~~~v~~Rlek~l--~~l~~ei~~~~---~ek~I~~kVk~~meK~ 225 (782)
T COG0466 159 SIDDPG----KLADTIAAHLPL---KLEEKQEI-LETLDVKERLEKLL--DLLEKEIDLLQ---LEKRIRKKVKEQMEKS 225 (782)
T ss_pred cccchH----HHHHHHHHhCCC---CHHHHHHH-HHhCCHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 445555 999999866544 33333332 33444333332222 23556666433 3344555666666666
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 009478 421 FDEAMVTSAIEKLEQALK 438 (533)
Q Consensus 421 ~~e~~I~~~~~~L~~~L~ 438 (533)
++|=++.+=+..|++.|-
T Consensus 226 QREyyL~EQlKaIqkELG 243 (782)
T COG0466 226 QREYYLREQLKAIQKELG 243 (782)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 666565554555555443
No 52
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=25.56 E-value=1.8e+02 Score=30.20 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcC-ChhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 009478 364 ALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-NPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNI 442 (533)
Q Consensus 364 ~l~~ekq~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L-~P~~y~~I~~~L~~~~~e~~I~~~~~~L~~~L~~~gI 442 (533)
.+.|+.-+|+++|++.-+-.+... +..-|..|...+-.|+ .+-.|.++.+++.+..+-.-.+.+.+.+++.|..+-
T Consensus 7 ~v~p~tV~rl~~~~~~~~~~~k~a--~k~~k~~LH~i~gay~~~~p~~~~ll~~l~~a~~~~D~e~~~~~~r~lL~~Ha- 83 (251)
T PF07091_consen 7 SVAPETVRRLAREALARRGDLKEA--VKATKRRLHQIFGAYLEGRPDYDALLRKLQEALDVGDPEAIRAWCRRLLAGHA- 83 (251)
T ss_dssp TB-HHHHHHHHHHHHCTTT-HHHH--HHHHHHHHHCCTCCCSSS---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTSH-
T ss_pred ccCHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccCcCCHHHHHHHHHHHHhhcc-
Confidence 456778888888887555555432 3357889999998898 444477777676663311111233444555665432
Q ss_pred ccccccccccchHHHHHHHHhcCCCCCcCCcc---------------eEEEEEeCCh-HHHHHHHHHHHhccCC-CCCcc
Q 009478 443 SFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDI---------------YGLRLIVENE-EDCYQALRVVHQLWAE-VPGKM 505 (533)
Q Consensus 443 ~~~~V~gR~Ks~ySI~~Km~rk~~~~~~I~Di---------------~giRIIv~~~-~dCY~vl~~vh~~~~p-~p~r~ 505 (533)
....|...+.-+|.++...=-+.+.|-|| -+.+.+-.++ ..+..+++.+-....+ .--++
T Consensus 84 ---ST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v 160 (251)
T PF07091_consen 84 ---STRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARV 160 (251)
T ss_dssp ---HHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ---chhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE
Confidence 47889999999999987642223334333 2345555443 4566666655443322 22355
Q ss_pred cccccC
Q 009478 506 KDYITR 511 (533)
Q Consensus 506 kDYIa~ 511 (533)
.|-...
T Consensus 161 ~Dl~~~ 166 (251)
T PF07091_consen 161 RDLLSD 166 (251)
T ss_dssp E-TTTS
T ss_pred eeeecc
Confidence 566654
No 53
>PF06303 MatP: Organiser of macrodomain of Terminus of chromosome; InterPro: IPR009390 Many bacteria have circular genomes that are large in comparison to their cellular dimensions; this imposes the necessity for compaction of the chromosome during cellular growth, replication, transcription, and segregation. Compaction of chromosomes results in the formation of structures called nucleoids. Nucleoids can be generated by a number of different processes: they include unrestrained DNA supercoiling, formation of a chromatin-like structure through the interaction of DNA binding proteins, condensation by structural maintenance of chromosomes (SMC)-like proteins, and macromolecular crowding []. Chromosome replication and segregation are intimately linked and tightly controlled to ensure that daughter cells each receive a complete copy of the genome. Chromosomes have replication origin (Ori) and termination (Ter) regions that are diametrically opposed. During the process of chromosome replication and cell division the Ori and Ter regions form two macrodomains (MDs), the Ori MD is centred on migS, a 25 bp sequence, that acts as the cis-acting site for the bipolar positioning of oriC []. The Ter MD is centred on dif (deletion-induced filamentation), which is a resolvase site that reduces chromosome multimers to monomers []. The Ori and Ter MDs are insulated from one and other by non-structural regions and other nucleoids. Chromosome replication initiates bidirectionally from oriC. Within the Ori MD with sister chromatids being located in separate cell halves and with the Ter macrodomain anchored to the cell pole. Cell division occurs with the completion of replication of the Ter region and the subsequent separation of the two sister chromatids [, ]. This entry contains MatP (YcbG), which is a component of the MatP/MatS site-specific system that organises the Ter macrodomain (MD) in Escherichia coli (strain K12) and related enterobacteria during replication of the chromosome. In E. coli there are 23 matS sequences, located in the Ter region which is centred on dif. The matS consensus is a palindromic sequence 5'-GTGAC[AG][CT]GTCAC, which is the recognition sequence for MatP. MatP binds to the matS sequences; and is critical for Ter MD formation. Inactivation of matP causes severe defects in chromosome segregation and cell division revealing its role as a major organiser of the Ter MD [].
Probab=24.93 E-value=1.2e+02 Score=29.17 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCcccccccccccch---HHHHHHHHh----cCCC
Q 009478 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSL---YSIHCKMLK----KKLT 467 (533)
Q Consensus 395 ~ELEDL~fr~L~P~~y~~I~~~L~~~~~e~~I~~~~~~L~~~L~~~gI~~~~V~gR~Ks~---ySI~~Km~r----k~~~ 467 (533)
.+++.-|-++++|+.-+++++.++..+.. ..+.+....|.|+| |.+|.++.+ .+++
T Consensus 52 ~~v~~WI~~~m~~~l~nklkQaIRArRkR-----------------~fnae~~~t~kKSIDLey~vW~rLS~lA~~~g~T 114 (148)
T PF06303_consen 52 VKVNEWIKKHMNPELWNKLKQAIRARRKR-----------------HFNAEHQHTRKKSIDLEYRVWQRLSALAQRRGMT 114 (148)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHh-----------------hccccccCCCcceeeecHHHHHHHHHHHHHcCCc
Confidence 46777788888888888888777665421 22223466777777 677777643 4666
Q ss_pred CC
Q 009478 468 MD 469 (533)
Q Consensus 468 ~~ 469 (533)
+.
T Consensus 115 LS 116 (148)
T PF06303_consen 115 LS 116 (148)
T ss_pred HH
Confidence 54
No 54
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=24.87 E-value=3.7e+02 Score=33.90 Aligned_cols=8 Identities=50% Similarity=0.837 Sum_probs=3.0
Q ss_pred cCCCCCCc
Q 009478 126 YSRSSPPI 133 (533)
Q Consensus 126 ~~~~~~~~ 133 (533)
||+.||+.
T Consensus 1571 ysptspsy 1578 (1605)
T KOG0260|consen 1571 YSPTSPSY 1578 (1605)
T ss_pred CCCCCCCc
Confidence 33333333
No 55
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=23.48 E-value=5.2e+02 Score=26.48 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCcc-c-----ccccccccchHHHHHHHHhcCCCCCcCCcceEEEEEe---CChHHHHHHHHHHHhcc
Q 009478 429 AIEKLEQALKDKNIS-F-----LVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIV---ENEEDCYQALRVVHQLW 498 (533)
Q Consensus 429 ~~~~L~~~L~~~gI~-~-----~~V~gR~Ks~ySI~~Km~rk~~~~~~I~Di~giRIIv---~~~~dCY~vl~~vh~~~ 498 (533)
..+.+.+.|++.|+. . ..+..+.+...-+.++|.++|+-+.....-..+||.+ .+++|+.++++.+.+..
T Consensus 291 ~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 291 NTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 334455556554543 1 1244455666778889988876544433334699977 47899999998887643
No 56
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=61 Score=34.25 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=40.6
Q ss_pred hhhhhhhHHHHHHHHHHHhcCcccc--------ccc-c-cccchHHHH-----HHHHhcCCCCCc----CCcceEEEEEe
Q 009478 421 FDEAMVTSAIEKLEQALKDKNISFL--------VLC-G-RHKSLYSIH-----CKMLKKKLTMDE----IHDIYGLRLIV 481 (533)
Q Consensus 421 ~~e~~I~~~~~~L~~~L~~~gI~~~--------~V~-g-R~Ks~ySI~-----~Km~rk~~~~~~----I~Di~giRIIv 481 (533)
++|.+|.+.-..+..+|.+.+|... .|. . -.-.+|.|. =||.-++++|++ ++|=++|.||=
T Consensus 66 YREkYlke~wp~v~raL~e~~i~c~lDL~egsm~V~TtRkT~DPyIiikArdlIKLlaRsVp~eqAvkiLqDev~CdiIk 145 (356)
T KOG2874|consen 66 YREKYLKECWPLVERALDEHHIKCVLDLVEGSMTVKTTRKTRDPYIIIKARDLIKLLARSVPFEQAVKILQDEVACDIIK 145 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceEEeeccceeEEeecccccCceeeeeHHHHHHHHHcCCCHHHHHHHHhhccceeeee
Confidence 3566778888888889999888742 011 1 122345554 367778888866 68888888874
No 57
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=23.26 E-value=3.2e+02 Score=27.54 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHc--C------CC------------HHHHHHHhhhcccc
Q 009478 255 YLLHCVETAMLLAAI--G------AN------------STVVAAGLLHDTLD 286 (533)
Q Consensus 255 YI~HpleVA~iLa~l--g------~D------------~~tIaAALLHDvVE 286 (533)
.+.|-++|+.....+ + .. ..+++||||||+=.
T Consensus 68 Ll~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK 119 (218)
T TIGR03760 68 LLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGK 119 (218)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhh
Confidence 578999997765542 1 11 24789999999743
No 58
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=21.93 E-value=4.1e+02 Score=26.62 Aligned_cols=92 Identities=25% Similarity=0.323 Sum_probs=53.6
Q ss_pred chhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHhcCcccc--cccccccchH----
Q 009478 383 PLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNISFL--VLCGRHKSLY---- 455 (533)
Q Consensus 383 PLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~-~e~~I~~~~~~L~~~L~~~gI~~~--~V~gR~Ks~y---- 455 (533)
-|+.|=-+-.+|.|+.+..|. ..+...+.... |.++++.++..+-......+.... .+-.+..++.
T Consensus 74 ~l~~R~~~l~aKqevi~~vf~-------~a~~~lv~~~~~d~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~ 146 (207)
T PRK01005 74 VQAGKRSLESLKQAVENKIFR-------ESLGEWLEHVLTDPEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNE 146 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHH
Confidence 344444455788888887764 12333444444 556677776665555544432211 1122222232
Q ss_pred ----HHHHHHHhcCCCCCcCCcceEEEEEeCC
Q 009478 456 ----SIHCKMLKKKLTMDEIHDIYGLRLIVEN 483 (533)
Q Consensus 456 ----SI~~Km~rk~~~~~~I~Di~giRIIv~~ 483 (533)
++-++|.++|+.+... ..|++|-..+
T Consensus 147 ~~~~~~~~~l~~~gv~~~~~--~gG~~v~~~d 176 (207)
T PRK01005 147 LLGKEVTKKLKEKGVSVGSF--VGGAQLKVEE 176 (207)
T ss_pred HHHHHHHHHHHHcCeEEecc--CCceEEEecC
Confidence 5678888999998876 6899987764
No 59
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=21.92 E-value=1.3e+02 Score=33.38 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhcCCccC--CCcc---hhHHHHHHHHHHH----HcCCC-----HHHH-HHHhhhcccc
Q 009478 229 REDFVIKAFYEAERAHRGQMRA--SGDP---YLLHCVETAMLLA----AIGAN-----STVV-AAGLLHDTLD 286 (533)
Q Consensus 229 d~~~v~kA~~~A~~aH~GQ~Rk--sGeP---YI~HpleVA~iLa----~lg~D-----~~tI-aAALLHDvVE 286 (533)
|..+|..--.|=.-.++.|.-. .|.- -++|-+|||.|-. .++.+ ++.+ +|||.||+=.
T Consensus 38 Dr~RIihSaAfRRLq~KTQVf~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiGh 110 (412)
T COG0232 38 DRDRIIHSAAFRRLQDKTQVFPLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIGH 110 (412)
T ss_pred cchhhhhhHHHHhhcccceecccccCCcccccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCCC
Confidence 3445555555555567777643 3333 3789999999765 46677 6554 6779999754
No 60
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=21.09 E-value=3.3e+02 Score=26.56 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhhcccccCCCCHHHHHHHhChhHHHHHHhhhcccccc-hH-Hhhcc-ccchHHHHHHH
Q 009478 259 CVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLS-KL-ARENN-TASKTVEADRL 335 (533)
Q Consensus 259 pleVA~iLa~lg~D~~tIaAALLHDvVEDT~vTleeI~e~FG~eVA~LV~gVTKl~~l~-~~-~r~~~-~~~~~~qae~l 335 (533)
|.+..-+|..++-+..- -+.|.+-+..+|.+||++.||.++.+.+.-|.|-.-+. +| ..+.. ...+ | +
T Consensus 4 p~eLVPll~~f~s~~~k----kV~~~Ls~~W~T~~El~e~~G~d~~~~L~~LkK~gLiE~qWrmP~pG~kPeK----E-Y 74 (160)
T PF09824_consen 4 PVELVPLLQTFNSEVYK----KVYDELSKGWMTEEELEEKYGKDVRESLLILKKGGLIESQWRMPEPGEKPEK----E-Y 74 (160)
T ss_pred HHHHHHHHHHhCCHHHH----HHHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHcCchhhccccCCCCCCchH----H-H
Confidence 44555555554433221 34567778899999999999999998888887755433 11 11111 0111 1 1
Q ss_pred HHHHHh-ccCceeehhhhhhhhhccccccCCCHHHHHHHH
Q 009478 336 HTMFLA-MADARAVLIKLADRLHNMMTLDALPLCKRQRFA 374 (533)
Q Consensus 336 RkmLLA-maD~RAvLIKLADRLhNMrtL~~l~~ekq~r~A 374 (533)
|...-. .++...-+.-|+|.++ +...+.+.-+.++
T Consensus 75 htsYs~vqaNFqcs~~DLsdii~----i~f~~deel~~~~ 110 (160)
T PF09824_consen 75 HTSYSKVQANFQCSMEDLSDIIY----IAFMSDEELRDYV 110 (160)
T ss_pred HhhHhheeeeeEeeHHHHHHHHh----eeecCHHHHHHHH
Confidence 211111 2577788888888885 4555665544444
No 61
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=20.61 E-value=4.3e+02 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHHcCCCHHHHHHHhhhcccc
Q 009478 254 PYLLHCVETAMLLAAIGANSTVVAAGLLHDTLD 286 (533)
Q Consensus 254 PYI~HpleVA~iLa~lg~D~~tIaAALLHDvVE 286 (533)
+-..|.+.|...+..+..+....-||||||+=.
T Consensus 227 dv~~Htl~~l~~~~~l~~~l~lr~AaLlHDlGK 259 (409)
T PRK10885 227 DTGIHTLMVLDQAAKLSPSLDVRFAALCHDLGK 259 (409)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHhccccC
Confidence 456899999888887777778889999999855
No 62
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.51 E-value=2e+02 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=37.4
Q ss_pred ccccccchHHHHHHHHhcCCCC-----CcCCcceEEEEEeCChHHHHHHHH
Q 009478 447 LCGRHKSLYSIHCKMLKKKLTM-----DEIHDIYGLRLIVENEEDCYQALR 492 (533)
Q Consensus 447 V~gR~Ks~ySI~~Km~rk~~~~-----~~I~Di~giRIIv~~~~dCY~vl~ 492 (533)
++.+.-++++...|+.+.|.++ .+--|..=+|.||+..+..|++|.
T Consensus 10 lENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Le 60 (142)
T COG4747 10 LENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLE 60 (142)
T ss_pred ecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHH
Confidence 6677778888899998887654 556777889999999999998864
No 63
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=20.34 E-value=1e+02 Score=28.68 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHHhhhcCChhHH--HHHHHHHHHHh-hhhhhhHHHHHHHHH--HHhcCc--cc-ccccccccchHHHHHHHHhcCCCC
Q 009478 397 LENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQA--LKDKNI--SF-LVLCGRHKSLYSIHCKMLKKKLTM 468 (533)
Q Consensus 397 LEDL~fr~L~P~~y--~~I~~~L~~~~-~e~~I~~~~~~L~~~--L~~~gI--~~-~~V~gR~Ks~ySI~~Km~rk~~~~ 468 (533)
..+.|+++|--..| .+|.++|.... .++.|+.+++.|.+. +++... .+ ..-..+-+...-|..+|.+||++.
T Consensus 13 a~~~al~~L~~r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~g~~~I~~~L~~kGi~~ 92 (157)
T PRK00117 13 ARARALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKGVDR 92 (157)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHcCCCH
Confidence 34455555554444 45667776542 455666666665531 222110 00 001235577889999999999987
Q ss_pred CcCCcceEEEEEeCChHHHHHHHHHHHhccCCC
Q 009478 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (533)
Q Consensus 469 ~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~ 501 (533)
+-|.++..-- + .++--.+..++.+.|...
T Consensus 93 ~~I~~~l~~~---~-~d~~e~a~~~~~k~~~~~ 121 (157)
T PRK00117 93 EIIEEALAEL---D-IDWEELARELARKKFRRP 121 (157)
T ss_pred HHHHHHHHHc---C-ccHHHHHHHHHHHHcCCC
Confidence 6666554421 1 222244455666666543
Done!