Query 009478
Match_columns 533
No_of_seqs 265 out of 1925
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 4.8E-87 1.6E-91 701.2 24.6 309 214-529 9-320 (393)
2 3nqw_A CG11900; stringent resp 100.0 5.5E-35 1.9E-39 277.5 8.0 166 228-404 4-176 (179)
3 3nr1_A HD domain-containing pr 100.0 5.1E-33 1.8E-37 263.9 13.1 145 229-384 3-156 (178)
4 3l9d_A SMU.1046C, putative GTP 100.0 3.9E-32 1.3E-36 270.8 7.6 136 379-527 19-158 (255)
5 2be3_A GTP pyrophosphokinase; 99.9 1E-24 3.5E-29 214.0 9.4 82 446-527 44-129 (226)
6 3dto_A BH2835 protein; all alp 93.6 0.33 1.1E-05 47.0 10.1 55 230-287 4-63 (223)
7 3b57_A LIN1889 protein; Q92AN1 93.5 0.21 7.3E-06 47.3 8.4 55 231-288 5-64 (209)
8 2pjq_A Uncharacterized protein 92.8 0.32 1.1E-05 47.0 8.5 56 228-286 7-67 (231)
9 3djb_A Hydrolase, HD family; a 92.2 0.38 1.3E-05 46.5 8.2 55 230-287 4-63 (223)
10 2qgs_A Protein Se1688; alpha-h 92.1 3 0.0001 39.8 14.4 54 231-287 5-64 (225)
11 2paq_A 5'-deoxynucleotidase YF 90.5 1.1 3.8E-05 42.6 9.5 95 252-359 29-144 (201)
12 2ibn_A Inositol oxygenase; red 80.9 1.5 5.1E-05 43.5 4.8 55 231-285 36-91 (250)
13 3gw7_A Uncharacterized protein 76.0 1.4 4.6E-05 43.2 2.8 32 256-287 27-63 (239)
14 2pq7_A Predicted HD superfamil 74.2 4.8 0.00016 37.9 6.1 50 232-284 14-68 (220)
15 2ogi_A Hypothetical protein SA 65.7 4.6 0.00016 37.6 3.9 33 255-287 27-64 (196)
16 3kh1_A Predicted metal-depende 64.1 5.8 0.0002 37.9 4.3 57 231-287 8-80 (200)
17 3ccg_A HD superfamily hydrolas 63.8 5.3 0.00018 36.9 3.9 33 255-287 20-57 (190)
18 2o08_A BH1327 protein; putativ 63.7 5.4 0.00018 36.8 3.9 34 254-287 18-56 (188)
19 4dmb_A HD domain-containing pr 63.4 6.3 0.00021 37.8 4.4 91 253-359 44-148 (204)
20 2dqb_A Deoxyguanosinetriphosph 59.1 6.7 0.00023 40.9 4.0 33 254-286 75-112 (376)
21 2cqz_A 177AA long hypothetical 57.3 9.1 0.00031 35.3 4.2 35 253-287 31-75 (177)
22 3m1t_A Putative phosphohydrola 55.0 63 0.0022 31.3 10.1 33 253-285 104-141 (275)
23 2hek_A Hypothetical protein; p 48.4 11 0.00037 39.1 3.5 35 253-287 49-89 (371)
24 2huo_A Inositol oxygenase; pro 46.1 22 0.00076 35.8 5.1 54 231-284 75-129 (289)
25 2gz4_A Hypothetical protein AT 43.6 18 0.00063 34.7 4.0 35 253-287 54-90 (207)
26 1xx7_A Oxetanocin-like protein 34.0 31 0.001 32.3 3.8 34 253-286 36-79 (184)
27 4a5p_A Protein MXIA, protein V 33.3 73 0.0025 33.3 6.9 190 271-480 173-380 (383)
28 2q14_A Phosphohydrolase; BT420 33.3 15 0.00051 38.7 1.7 33 254-286 55-100 (410)
29 3ssb_I IMPI alpha, inducible m 32.8 6.8 0.00023 27.0 -0.6 15 158-172 11-25 (32)
30 3irh_A HD domain protein; phos 30.1 18 0.00062 39.0 1.7 32 254-285 86-137 (480)
31 3tm8_A BD1817, uncharacterized 29.3 33 0.0011 34.4 3.4 35 251-285 162-206 (328)
32 1ynb_A Hypothetical protein AF 29.2 82 0.0028 29.3 5.8 34 253-286 37-78 (173)
33 3u1n_A SAM domain and HD domai 28.5 20 0.00069 39.1 1.7 33 254-286 65-112 (528)
34 4i1u_A Dephospho-COA kinase; s 26.5 48 0.0016 31.5 3.8 40 261-304 24-66 (210)
35 3a5i_A Flagellar biosynthesis 23.8 51 0.0017 34.6 3.7 182 272-479 180-382 (389)
36 3bg2_A DGTP triphosphohydrolas 22.6 59 0.002 34.6 4.0 56 231-286 36-120 (444)
37 3kq5_A Hypothetical cytosolic 21.1 1.3E+02 0.0046 31.5 6.1 30 255-284 76-115 (393)
38 3hc1_A Uncharacterized HDOD do 20.1 1.3E+02 0.0045 29.4 5.7 33 253-285 117-155 (305)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=4.8e-87 Score=701.16 Aligned_cols=309 Identities=37% Similarity=0.570 Sum_probs=279.2
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhcccccCCCCHH
Q 009478 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (533)
Q Consensus 214 ~~~ll~~~~~~~~~~d~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D~~tIaAALLHDvVEDT~vTle 293 (533)
+.+++..+..+.+..+.+++.+|+.||.++|.||+|++|+|||.||++||.+|+++|+|+++++||||||++|||++|.+
T Consensus 9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e 88 (393)
T 1vj7_A 9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD 88 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence 35677888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhChhHHHHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhcc-CceeehhhhhhhhhccccccCCCHHHHHH
Q 009478 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (533)
Q Consensus 294 eI~e~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAma-D~RAvLIKLADRLhNMrtL~~l~~ekq~r 372 (533)
+|++.||++|+.||++|||++.+++..+ ...|++++|+||++|+ |+||++||||||+||||++..+++++|++
T Consensus 89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~~------~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~ 162 (393)
T 1vj7_A 89 NIEFDFGKDVRDIVDGVTKLGKVEYKSH------EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER 162 (393)
T ss_dssp HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred HHHHHhCHHHHHHHHHHHhcccCCcccH------HHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence 9999999999999999999998864221 2357899999999996 99999999999999999999999999999
Q ss_pred HHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHhcCccccccccc
Q 009478 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (533)
Q Consensus 373 ~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~--~e~~I~~~~~~L~~~L~~~gI~~~~V~gR 450 (533)
+|+||++||||||+||||++||||||||||+||+|+.|+.|.++|.+.+ ++.+++.+.+.|++.|.+.||.+. |++|
T Consensus 163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R 241 (393)
T 1vj7_A 163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR 241 (393)
T ss_dssp HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence 9999999999999999999999999999999999999999999998765 578899999999999999999985 9999
Q ss_pred ccchHHHHHHHHhcCCCCCcCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeCCc
Q 009478 451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYERN 529 (533)
Q Consensus 451 ~Ks~ySI~~Km~rk~~~~~~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~~~ 529 (533)
+|++||||+||+||+.+|++|+|++||||||++.+|||+++++||+.|+|+|++|||||++||+||||||||+|..+.+
T Consensus 242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~ 320 (393)
T 1vj7_A 242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG 320 (393)
T ss_dssp CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS
T ss_pred eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-35 Score=277.50 Aligned_cols=166 Identities=25% Similarity=0.359 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHHHHHhcCCccC--CCcchhHHHHHHHHHHH-HcCC-CHHHHHHHhhhcccccCCCCHHHHHHHhChhH
Q 009478 228 FREDFVIKAFYEAERAHRGQMRA--SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (533)
Q Consensus 228 ~d~~~v~kA~~~A~~aH~GQ~Rk--sGePYI~HpleVA~iLa-~lg~-D~~tIaAALLHDvVEDT~vTleeI~e~FG~eV 303 (533)
.|.+++.+|+.||.++|.||+|+ +|+|||.||++||.+|+ ++|+ |+++++||||||++|||.+|.++|++.||++|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~V 83 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDV 83 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 45678999999999999999998 69999999999999999 8998 99999999999999999999999999999999
Q ss_pred HHHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhccCceeehhhhhhhhhccccccCCCHHHH-HHHHhhhhhhhh
Q 009478 304 ADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFV 382 (533)
Q Consensus 304 A~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAmaD~RAvLIKLADRLhNMrtL~~l~~ekq-~r~A~ETl~IYA 382 (533)
+.+|++|||++.+++..+ +..|.+++|+ .|+||++||||||+||||++...++++| ..-+++....+.
T Consensus 84 a~lV~gvtk~~~~~~~~~------~~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~ 152 (179)
T 3nqw_A 84 CGLVREVTDDKSLEKQER------KRLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAK 152 (179)
T ss_dssp HHHHHHTCCCTTSCHHHH------HHHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCHHHH------HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Confidence 999999999998876433 2335566552 6999999999999999999887766543 223445666666
Q ss_pred chhccc--CchhHHHHHHHHhhhc
Q 009478 383 PLANRL--GISTWKVQLENLCFKH 404 (533)
Q Consensus 383 PLA~RL--Gi~~iK~ELEDL~fr~ 404 (533)
+++..| +-..+..+|.++.-+|
T Consensus 153 ~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 153 KVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Confidence 677666 3335666666665443
No 3
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.1e-33 Score=263.86 Aligned_cols=145 Identities=32% Similarity=0.424 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHHhcCCccCC--CcchhHHHHHHHHHH-HHcCC-CHHHHHHHhhhcccccCCCCHHHHHHHhChhHH
Q 009478 229 REDFVIKAFYEAERAHRGQMRAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (533)
Q Consensus 229 d~~~v~kA~~~A~~aH~GQ~Rks--GePYI~HpleVA~iL-a~lg~-D~~tIaAALLHDvVEDT~vTleeI~e~FG~eVA 304 (533)
|.+++.+|+.||.++|.||+|++ |+|||.||++||.+| .++|+ |+++++||||||++|||++|+++|++.||++|+
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va 82 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVR 82 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHH
Confidence 56789999999999999999986 999999999999999 58996 999999999999999999999999999999999
Q ss_pred HHHHhhhcccccchHHhhccccchHHHHHHHHHHHHhccCceeehhhhhhhhhccccccCCCHH-----HHHHHHhhhhh
Q 009478 305 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLC-----KRQRFAKETLE 379 (533)
Q Consensus 305 ~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLLAmaD~RAvLIKLADRLhNMrtL~~l~~e-----kq~r~A~ETl~ 379 (533)
.+|++|||++.+++..+ +..|.++++ ..|+||++||||||+||||++...+++ +.++|.+|...
T Consensus 83 ~lV~gvTk~~~~~~~~~------~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~ 151 (178)
T 3nr1_A 83 RLVEEVTDDKTLPKLER------KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQ 151 (178)
T ss_dssp HHHHHTCCCTTSCHHHH------HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhhH------HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHH
Confidence 99999999998875433 233455543 369999999999999999998765443 44566666655
Q ss_pred hhhch
Q 009478 380 IFVPL 384 (533)
Q Consensus 380 IYAPL 384 (533)
|..-|
T Consensus 152 v~~~l 156 (178)
T 3nr1_A 152 VVKGL 156 (178)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 4
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=99.97 E-value=3.9e-32 Score=270.76 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=97.9
Q ss_pred hhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcCcccccccccccchHHHH
Q 009478 379 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 458 (533)
Q Consensus 379 ~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~~e~~I~~~~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~ 458 (533)
.||||||+||||.++|.|+|++.+.|. ..+.+++.+|+. +.+.+...+....|. .|++|+|+++||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~--~a~~el~~kl~~---------l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYI--QAVGELKIKFRG---------IRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHH--HHHHHHHHHHHH---------HHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------HHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 799999999999999999999988654 355555544432 222223233334443 5999999999999
Q ss_pred HHHHhcCCCCC----cCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeEEEEEeC
Q 009478 459 CKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQVVLSYE 527 (533)
Q Consensus 459 ~Km~rk~~~~~----~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLHtiV~~~ 527 (533)
+||+|++.+++ +|+||+||||||.+.+|||+++++||+.|.+.|.++||||++||+|||||||++|.++
T Consensus 86 ~Km~Rk~~~~~~~~~~I~Di~GiRII~~~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~nGYrSlH~iv~~p 158 (255)
T 3l9d_A 86 EKMVLRGIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINNLKPSGYRSYHVIVEYP 158 (255)
T ss_dssp HHHHHHTCCGGGHHHHCSCSEEEEEEESSTTHHHHHHHHHHTCSSSEEEEEEEESCC-CCCSCCEEEEEEEEE
T ss_pred HHHHhcCCCccchhhhccccceEEEEEeCHHHHHHHHHHHHhcCCCceeeeeccccCCCCCCceeEEEEEEcc
Confidence 99999999987 7999999999999999999999999999999999999999999999999999999864
No 5
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=99.91 E-value=1e-24 Score=213.99 Aligned_cols=82 Identities=32% Similarity=0.484 Sum_probs=79.3
Q ss_pred cccccccchHHHHHHHHhcCCCCC----cCCcceEEEEEeCChHHHHHHHHHHHhccCCCCCcccccccCCCCCCCceeE
Q 009478 446 VLCGRHKSLYSIHCKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYIFSQ 521 (533)
Q Consensus 446 ~V~gR~Ks~ySI~~Km~rk~~~~~----~I~Di~giRIIv~~~~dCY~vl~~vh~~~~p~p~r~kDYIa~PK~NGYrSLH 521 (533)
.|++|+|+++||++||+|++.+++ +|+||+|+||||.+.+|||+++++||+.|.+.|.++||||++||+|||||||
T Consensus 44 ~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~~~d~y~v~~~i~~~~~~~~~~~kDyI~~PK~nGYrSlH 123 (226)
T 2be3_A 44 FVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYRSYH 123 (226)
T ss_dssp EEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESCGGGHHHHHHHHHTCSSEEEEEEEETTTTCCTTSCCCEE
T ss_pred eEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcCHHHHHHHHHHHHhccCCceeeecchhhcCCCCCceEEE
Confidence 499999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC
Q 009478 522 VVLSYE 527 (533)
Q Consensus 522 tiV~~~ 527 (533)
++|.++
T Consensus 124 ~~v~~p 129 (226)
T 2be3_A 124 VVVEYT 129 (226)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 999864
No 6
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=93.61 E-value=0.33 Score=47.00 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH----cCCCHH-HHHHHhhhccccc
Q 009478 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDD 287 (533)
Q Consensus 230 ~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVED 287 (533)
.+.++++..|+.+.+.+. ....=+.|..+|+.+... .+.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDD 63 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 467888899998887654 222347899999775543 366754 6688999999853
No 7
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=93.52 E-value=0.21 Score=47.26 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccccC
Q 009478 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 288 (533)
Q Consensus 231 ~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVEDT 288 (533)
+++.++..+......++ ....-+.|.++|+.+... .+.|.+ +.+||||||+....
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 45666666666554422 111227899999886654 367765 56899999997653
No 8
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=92.79 E-value=0.32 Score=47.00 Aligned_cols=56 Identities=23% Similarity=0.123 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH----cCCCHH-HHHHHhhhcccc
Q 009478 228 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 228 ~d~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~----lg~D~~-tIaAALLHDvVE 286 (533)
.+.+.+.++..+......++. ...-+.|.+.|+..... .+.|.+ +.+||||||+..
T Consensus 7 ~~~~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 7 ITETQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp CCHHHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 455667777777766655321 11237899999876654 366765 558999999985
No 9
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=92.20 E-value=0.38 Score=46.54 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHc----CCCHH-HHHHHhhhccccc
Q 009478 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLDD 287 (533)
Q Consensus 230 ~~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~l----g~D~~-tIaAALLHDvVED 287 (533)
.+.++++..|+.+.+.+.. ...=+.|..+|+.+...+ +.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKDA---SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSS---CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHHHHhhcCC---CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 3578889999988876542 223488999998866654 55654 6689999999863
No 10
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=92.07 E-value=3 Score=39.83 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHc-----CCCH-HHHHHHhhhccccc
Q 009478 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI-----GANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 231 ~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~l-----g~D~-~tIaAALLHDvVED 287 (533)
+.+.++..+......++ ....-+.|.+.|+.....+ +.|. .+.+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 45666777776665532 1123478999998874333 5554 46699999999874
No 11
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=90.54 E-value=1.1 Score=42.61 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred CcchhHHHHHHHHHHHH--------c--CCCH-HHHHHHhhhccccc--CCC-C-H----HHHHHHhChhHHHHHHhhhc
Q 009478 252 GDPYLLHCVETAMLLAA--------I--GANS-TVVAAGLLHDTLDD--AFL-S-Y----DYIFRTFGAGVADLVEGVSK 312 (533)
Q Consensus 252 GePYI~HpleVA~iLa~--------l--g~D~-~tIaAALLHDvVED--T~v-T-l----eeI~e~FG~eVA~LV~gVTK 312 (533)
++.-..|.++||.+..- + +.|. .++.+|||||+.|- +++ | . .++.+.++..=..+++.+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 46677899999875432 2 3554 57788999999882 222 1 1 23333333222222332221
Q ss_pred ccccchHHhhccccchHHHHHHHHHHHHhc--cCceeehhhhhhhhhcc
Q 009478 313 LSQLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNM 359 (533)
Q Consensus 313 l~~l~~~~r~~~~~~~~~qae~lRkmLLAm--aD~RAvLIKLADRLhNM 359 (533)
.++. .+.+.++.+.... ..+.+.+||.||++.-+
T Consensus 109 --~Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 --MVPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp --TSCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred --hCCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1111 0123344444333 24678999999999765
No 12
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=80.89 E-value=1.5 Score=43.46 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCC-HHHHHHHhhhccc
Q 009478 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDTL 285 (533)
Q Consensus 231 ~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D-~~tIaAALLHDvV 285 (533)
..|.+|+++-.......-.....|-+.|+++.|....+-|.| +-.+.||||||+=
T Consensus 36 mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDLG 91 (250)
T 2ibn_A 36 MTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 91 (250)
T ss_dssp ECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTGG
T ss_pred CcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhccH
Confidence 346777666555544432234567799999999999988998 5555999999963
No 13
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=75.97 E-value=1.4 Score=43.22 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHc----CCCH-HHHHHHhhhccccc
Q 009478 256 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 256 I~HpleVA~iLa~l----g~D~-~tIaAALLHDvVED 287 (533)
+.|.++|+.....+ +.|. .+.+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999998877664 3454 57789999999764
No 14
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=74.23 E-value=4.8 Score=37.92 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhcc
Q 009478 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDT 284 (533)
Q Consensus 232 ~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~----lg~D~-~tIaAALLHDv 284 (533)
.+.++.++..+...+. ....-+.|.+.|+.+... .+.|. .+..||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3556667776655432 223447899999876643 46665 46689999999
No 15
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=65.69 E-value=4.6 Score=37.59 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHH----cCCCH-HHHHHHhhhccccc
Q 009478 255 YLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 255 YI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVED 287 (533)
.+.|.+.||.+... +|.|+ ...+||||||+=.-
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 56899999876543 67775 45689999998654
No 16
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=64.08 E-value=5.8 Score=37.87 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhc--CCccCC-------CcchhHHHHHHHHHHHHc------CCCH-HHHHHHhhhccccc
Q 009478 231 DFVIKAFYEAERAHR--GQMRAS-------GDPYLLHCVETAMLLAAI------GANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 231 ~~v~kA~~~A~~aH~--GQ~Rks-------GePYI~HpleVA~iLa~l------g~D~-~tIaAALLHDvVED 287 (533)
+.+.+-+.|...+++ .+.|.+ .+.--.|-+.||.+..-+ +.|. .++..||+||+.|-
T Consensus 8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~ 80 (200)
T 3kh1_A 8 SRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEI 80 (200)
T ss_dssp HHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHH
Confidence 345556666655543 223321 144568999998764432 2565 68889999999993
No 17
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=63.84 E-value=5.3 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHH----cCCCH-HHHHHHhhhccccc
Q 009478 255 YLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 255 YI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVED 287 (533)
.+.|.+.||.+... +|.|+ ...+||||||+=.-
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 46899999875543 57775 46689999998653
No 18
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=63.70 E-value=5.4 Score=36.77 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHHH----cCCCH-HHHHHHhhhccccc
Q 009478 254 PYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDD 287 (533)
Q Consensus 254 PYI~HpleVA~iLa~----lg~D~-~tIaAALLHDvVED 287 (533)
..+.|.+.||.+... +|.|+ ...+||||||+=.-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 356899999875543 57775 45689999998654
No 19
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=63.37 E-value=6.3 Score=37.82 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHHHcC---CCH-HHHHHHhhhccccc--CCCCHHHHHHHhChhHH-----HHHHhhhcccccchHHh
Q 009478 253 DPYLLHCVETAMLLAAIG---ANS-TVVAAGLLHDTLDD--AFLSYDYIFRTFGAGVA-----DLVEGVSKLSQLSKLAR 321 (533)
Q Consensus 253 ePYI~HpleVA~iLa~lg---~D~-~tIaAALLHDvVED--T~vTleeI~e~FG~eVA-----~LV~gVTKl~~l~~~~r 321 (533)
+.--.|-+.||.+..-+. .|. .++..||+||+.|- +++|+-+ ..+.+.. ..++.+. ..++.
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~k---~~~~~~k~~~E~~A~~~l~--~~LP~--- 115 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPAD---NIPKEEKHRREEEAMKQIT--QLLPE--- 115 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGGG---CCCHHHHHHHHHHHHHHHH--TTSCH---
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCcccc---ccchhhhHHHHHHHHHHHH--HhCCH---
Confidence 556689999997766543 564 67889999999994 3444210 0111100 1111111 11221
Q ss_pred hccccchHHHHHHHHHHHHhc---cCceeehhhhhhhhhcc
Q 009478 322 ENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNM 359 (533)
Q Consensus 322 ~~~~~~~~~qae~lRkmLLAm---aD~RAvLIKLADRLhNM 359 (533)
.+.+.++.++... ..+.+.+||-+|++.-+
T Consensus 116 --------~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~l 148 (204)
T 4dmb_A 116 --------DLRKELYELWEEYETQSSAEAKFVKQLDQCEMI 148 (204)
T ss_dssp --------HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1234455554433 36789999999999865
No 20
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=59.15 E-value=6.7 Score=40.92 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHH----HcCCCHH-HHHHHhhhcccc
Q 009478 254 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 254 PYI~HpleVA~iLa----~lg~D~~-tIaAALLHDvVE 286 (533)
.-++|.++||.+.. .+|.+++ +-+||||||+=.
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh 112 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGH 112 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC
Confidence 44689999998654 4787765 458899999874
No 21
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=57.34 E-value=9.1 Score=35.35 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHH---HH------cCCCHH-HHHHHhhhccccc
Q 009478 253 DPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 287 (533)
Q Consensus 253 ePYI~HpleVA~iL---a~------lg~D~~-tIaAALLHDvVED 287 (533)
+.-..|.+.||.+. +. -+.|.. ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 45568999998765 43 356765 6889999999873
No 22
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=54.97 E-value=63 Score=31.28 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHH----cCCCH-HHHHHHhhhccc
Q 009478 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTL 285 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~D~-~tIaAALLHDvV 285 (533)
..++.|.+.||.+... ++.+. +...||||||+=
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiG 141 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIG 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 4588999999876553 46664 577999999963
No 23
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=48.35 E-value=11 Score=39.10 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHHHHH----cCCCH--HHHHHHhhhccccc
Q 009478 253 DPYLLHCVETAMLLAA----IGANS--TVVAAGLLHDTLDD 287 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~D~--~tIaAALLHDvVED 287 (533)
...+.|.+.||.+... ++.+. .+.+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 4568999999875543 57665 57899999998764
No 24
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=46.13 E-value=22 Score=35.79 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCCccCCCcchhHHHHHHHHHHHHcCCC-HHHHHHHhhhcc
Q 009478 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 284 (533)
Q Consensus 231 ~~v~kA~~~A~~aH~GQ~RksGePYI~HpleVA~iLa~lg~D-~~tIaAALLHDv 284 (533)
..|.+|+++-.......-.....|-|.|++++|+.+.+-|.+ .=...+||+||.
T Consensus 75 MtIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 75 MTIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp ECHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred CcHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 347777777665555443345689999999999999987877 446778999995
No 25
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=43.56 E-value=18 Score=34.71 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=27.5
Q ss_pred cchhHHHHHHHHHHHHc--CCCHHHHHHHhhhccccc
Q 009478 253 DPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 287 (533)
Q Consensus 253 ePYI~HpleVA~iLa~l--g~D~~tIaAALLHDvVED 287 (533)
+.--.|.+.||.+...+ +.|...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 44568999999876543 457789999999999984
No 26
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=34.03 E-value=31 Score=32.29 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=25.6
Q ss_pred cchhHHHHHHHHH---HHH------cCCCHH-HHHHHhhhcccc
Q 009478 253 DPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLD 286 (533)
Q Consensus 253 ePYI~HpleVA~i---La~------lg~D~~-tIaAALLHDvVE 286 (533)
+.--.|.+.||.+ |+. -+.|.+ ++..||+||+.|
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHH
Confidence 4556899998874 344 356774 788999999988
No 27
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=33.35 E-value=73 Score=33.30 Aligned_cols=190 Identities=12% Similarity=0.179 Sum_probs=109.4
Q ss_pred CCHHHHHHHhhhcccccC---CCCHHHHHH---HhChhHHHHHHhhhcccccchHHhhccccchHHHHHHHHHHHH---h
Q 009478 271 ANSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (533)
Q Consensus 271 ~D~~tIaAALLHDvVEDT---~vTleeI~e---~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qae~lRkmLL---A 341 (533)
.|+.+++|--|..++... .++.+|++. ...++--+||+.+.+.-.+..+ .+-++++|- .
T Consensus 173 vd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl~~~l~l~~i------------~~VLq~LL~E~Vs 240 (383)
T 4a5p_A 173 XSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEVFRHVTIQRI------------SEVLQRLLGENIS 240 (383)
T ss_dssp BCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHHHTTCCHHHH------------HHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHHHccCCHHHH------------HHHHHHHHhCCCC
Confidence 378888888888888764 356655443 3455555667766533222211 245666552 3
Q ss_pred ccCceeehhhhhhhhhccccccCCCHHHHHHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 009478 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF 421 (533)
Q Consensus 342 maD~RAvLIKLADRLhNMrtL~~l~~ekq~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~~ 421 (533)
+-|.+.++=-|||.-..-+....+...-|+++++.-..-|++- ..|-+..+-.++|++-..-+.+..... .+ ..
T Consensus 241 IRdlrtIlEtLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~-~~L~vi~L~p~lE~~l~~si~~t~~g~---~l--aL 314 (383)
T 4a5p_A 241 VRNLKLIMESLALWAPREXDVITLVEHVRASLSRYICSKIAVS-GEIXVVMLSGYIEDAIRXGIRQTSGGS---FL--NM 314 (383)
T ss_dssp CSCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCBT-TEEEEEECCHHHHHHHHHTEECC-----------CC
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCHHHHHHHHHHhcccCCCC---cc--CC
Confidence 4478888878888776666555566666777777655555544 556677788888888766655322110 11 11
Q ss_pred hhhhhhHHHHHHHHHHHh---cCcccccccccccchHHHHHHHHhcCC------CCCcCCcceEEEEE
Q 009478 422 DEAMVTSAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 480 (533)
Q Consensus 422 ~e~~I~~~~~~L~~~L~~---~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~~I~Di~giRII 480 (533)
+....+++++.+++.+++ .|.....++.-. +-...+|+.++.. ++.+|.+=.-++++
T Consensus 315 ~P~~~~~l~~~l~~~~~~~~~~g~~pVLLts~~--iR~~lrrlle~~~p~l~VLS~~EI~~~~~i~~v 380 (383)
T 4a5p_A 315 DIEVSDEVMETLAHALRELRNAXXNFVLLVSVD--IRRFVXRLIDNRFXSILVISYAEIDEAYTINVL 380 (383)
T ss_dssp EECCCHHHHHHHHHHHHHHHSSSCCCEEEECTT--THHHHHHHHHTTCSSSCEEETTSCCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCeEEEcCHH--HHHHHHHHHHHhcCCceEEeHHHcCCCCceEEE
Confidence 233345566666666543 344432233322 3345677776643 46888887777764
No 28
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.31 E-value=15 Score=38.70 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHH----cC-----CC----HHHHHHHhhhcccc
Q 009478 254 PYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTLD 286 (533)
Q Consensus 254 PYI~HpleVA~iLa~----lg-----~D----~~tIaAALLHDvVE 286 (533)
.-+.|.++|+.+... ++ .+ ..+.+||||||+=-
T Consensus 55 tRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh 100 (410)
T 2q14_A 55 TRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGH 100 (410)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTC
T ss_pred CeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC
Confidence 568999999886654 33 23 34679999999743
No 29
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=32.84 E-value=6.8 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=12.5
Q ss_pred hhhhhhhhccccccC
Q 009478 158 NGFVRNALGSCVDYD 172 (533)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (533)
.|||||.-|.||--+
T Consensus 11 ~G~vrn~~G~CV~~~ 25 (32)
T 3ssb_I 11 DGYARDVNGKCIPIK 25 (32)
T ss_dssp TTEEECTTSCEEEGG
T ss_pred CCcEECCCCCEECHH
Confidence 699999999998543
No 30
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=30.09 E-value=18 Score=38.97 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHcC----------------CCH----HHHHHHhhhccc
Q 009478 254 PYLLHCVETAMLLAAIG----------------ANS----TVVAAGLLHDTL 285 (533)
Q Consensus 254 PYI~HpleVA~iLa~lg----------------~D~----~tIaAALLHDvV 285 (533)
--++|.++|+.+...++ .++ .+.+||||||+=
T Consensus 86 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 86 SRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 34789999988664321 221 256999999974
No 31
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=29.26 E-value=33 Score=34.40 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCcchh-HHHHHHHHHHHH----cCCCH----H-HHHHHhhhccc
Q 009478 251 SGDPYL-LHCVETAMLLAA----IGANS----T-VVAAGLLHDTL 285 (533)
Q Consensus 251 sGePYI-~HpleVA~iLa~----lg~D~----~-tIaAALLHDvV 285 (533)
...||. .|.+.||.+... +|++. . ...||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445665 699999876543 57654 3 45699999984
No 32
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=29.25 E-value=82 Score=29.26 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHH---HHH-cCCCH----HHHHHHhhhcccc
Q 009478 253 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLD 286 (533)
Q Consensus 253 ePYI~HpleVA~i---La~-lg~D~----~tIaAALLHDvVE 286 (533)
+.--.|-..||.+ |+. .|.|. .++..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 4456899999887 655 35666 4577899999988
No 33
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=28.45 E-value=20 Score=39.09 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHc-----------CCCH----HHHHHHhhhcccc
Q 009478 254 PYLLHCVETAMLLAAI-----------GANS----TVVAAGLLHDTLD 286 (533)
Q Consensus 254 PYI~HpleVA~iLa~l-----------g~D~----~tIaAALLHDvVE 286 (533)
--++|.++|+.+...+ +.+. .+.+||||||+=-
T Consensus 65 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiGH 112 (528)
T 3u1n_A 65 NRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGH 112 (528)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccCC
Confidence 4489999998766543 1222 2568999999743
No 34
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=26.52 E-value=48 Score=31.54 Aligned_cols=40 Identities=35% Similarity=0.404 Sum_probs=31.9
Q ss_pred HHHHHHHHcCC---CHHHHHHHhhhcccccCCCCHHHHHHHhChhHH
Q 009478 261 ETAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (533)
Q Consensus 261 eVA~iLa~lg~---D~~tIaAALLHDvVEDT~vTleeI~e~FG~eVA 304 (533)
.|+.+|+++|. |.+.++ |++++......++|.+.||+++.
T Consensus 24 tv~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~~ 66 (210)
T 4i1u_A 24 TVADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAFV 66 (210)
T ss_dssp HHHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGGB
T ss_pred HHHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhhc
Confidence 35778888875 666665 88888888899999999999863
No 35
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=23.82 E-value=51 Score=34.55 Aligned_cols=182 Identities=16% Similarity=0.245 Sum_probs=99.5
Q ss_pred CHHHHHHHhhhcccccC---CCCHHHHH---HHhChhHHHHHHhhh-cccccchHHhhccccchHHHHHHHHHHHH---h
Q 009478 272 NSTVVAAGLLHDTLDDA---FLSYDYIF---RTFGAGVADLVEGVS-KLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (533)
Q Consensus 272 D~~tIaAALLHDvVEDT---~vTleeI~---e~FG~eVA~LV~gVT-Kl~~l~~~~r~~~~~~~~~qae~lRkmLL---A 341 (533)
|+.+++|--|..++... .++.+|++ +...++--+||+.|. +.-.+..+ .+-++++|- .
T Consensus 180 d~~tViaTHLsevi~~~a~ellg~qEvq~LLd~L~~~~p~LVeEl~p~~l~l~~i------------~~VLq~LL~E~Vs 247 (389)
T 3a5i_A 180 EASTVVATHLNHLIGQFSAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTTL------------HKVLQNLLAEKVP 247 (389)
T ss_dssp EHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHTTCHHHHHTTTTTTSCHHHH------------HHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHhccCCcCHHHH------------HHHHHHHHhCCCC
Confidence 55666666666665543 24555433 335555556777764 33333221 245666552 3
Q ss_pred ccCceeehhhhhhhhhccccccCCCHHHHHHHHhhhhhhhhchhcccCchhHHHHHHHHhhhcCChhHHHHHHHHHHHH-
Q 009478 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC- 420 (533)
Q Consensus 342 maD~RAvLIKLADRLhNMrtL~~l~~ekq~r~A~ETl~IYAPLA~RLGi~~iK~ELEDL~fr~L~P~~y~~I~~~L~~~- 420 (533)
+-|.+.++=-|||.-..-+....+...-|.++++.-..-|++-...|-+..+-.++|++-.. .++..
T Consensus 248 IRdlrtIlEaLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~~~~L~vi~L~p~lE~~l~~------------si~qt~ 315 (389)
T 3a5i_A 248 IRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQ------------ALQGGG 315 (389)
T ss_dssp CCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHHSCTTCCEECBCCCTTHHHHHHH------------HHHSSS
T ss_pred cccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCHHHHHHHHH------------HhcccC
Confidence 45888888888888776666656666677777776656565555556666666666665442 22211
Q ss_pred -hhhhhhhHHHHHHHHHHH---hcCcccccccccccchHHHHHHHHhcCC------CCCcCCcceEEEE
Q 009478 421 -FDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRL 479 (533)
Q Consensus 421 -~~e~~I~~~~~~L~~~L~---~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~~I~Di~giRI 479 (533)
.+....+++++.+++.+. ..|.....++ .-.+-...+||.++.. ++.+|.+=.-+++
T Consensus 316 GL~P~~~~~l~~~l~~~~~~~~~~g~~pVLL~--s~~iR~~lr~lle~~~p~l~VLS~~EI~~~~~I~~ 382 (389)
T 3a5i_A 316 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV--NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 382 (389)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHTCCCEEEE--CTTTHHHHHHHHTTTCTTCEEEETTTSCTTCCEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEe--CHHHHHHHHHHHHHHCCCCEEEehHhcCCCCeeEE
Confidence 222334445555555443 3344432233 2233345677766543 3577776655554
No 36
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=22.61 E-value=59 Score=34.57 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCccCCC-----cchhHHHHHHHHHHHH----cCC---------------C-----HHHHHHHhh
Q 009478 231 DFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAA----IGA---------------N-----STVVAAGLL 281 (533)
Q Consensus 231 ~~v~kA~~~A~~aH~GQ~RksG-----ePYI~HpleVA~iLa~----lg~---------------D-----~~tIaAALL 281 (533)
++|...-.|=.-.+..|.-..+ .--++|.++|+.+... ++. . .-+.+|||+
T Consensus 36 ~rii~s~~frRL~~ktQv~~~~~~~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~ 115 (444)
T 3bg2_A 36 DRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALA 115 (444)
T ss_dssp HHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHhhhccCCccCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHh
Confidence 3444444444445666653221 2347999999876543 211 1 235689999
Q ss_pred hcccc
Q 009478 282 HDTLD 286 (533)
Q Consensus 282 HDvVE 286 (533)
||+=.
T Consensus 116 HDiGH 120 (444)
T 3bg2_A 116 HDIGN 120 (444)
T ss_dssp TTTTC
T ss_pred cccCC
Confidence 99743
No 37
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=21.11 E-value=1.3e+02 Score=31.54 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=20.2
Q ss_pred hhHHHHH-HHHHHHHc------CCC---HHHHHHHhhhcc
Q 009478 255 YLLHCVE-TAMLLAAI------GAN---STVVAAGLLHDT 284 (533)
Q Consensus 255 YI~Hple-VA~iLa~l------g~D---~~tIaAALLHDv 284 (533)
.+.|-++ |+.....+ +.+ ..+++||||||+
T Consensus 76 LLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDI 115 (393)
T 3kq5_A 76 LMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEV 115 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcc
Confidence 4689999 86554432 111 156899999996
No 38
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=20.11 E-value=1.3e+02 Score=29.38 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=24.2
Q ss_pred cchhHHHHHHHHHHHH----cCC-C-HHHHHHHhhhccc
Q 009478 253 DPYLLHCVETAMLLAA----IGA-N-STVVAAGLLHDTL 285 (533)
Q Consensus 253 ePYI~HpleVA~iLa~----lg~-D-~~tIaAALLHDvV 285 (533)
..++.|.+.||.+... +|. + .....||+|||+=
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIG 155 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVG 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 4567899999876553 455 3 4577999999974
Done!