BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009479
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/525 (47%), Positives = 347/525 (66%), Gaps = 17/525 (3%)
Query: 11 NTEVEKRFETLKAEIEKLLVS--NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQT 68
+ E EKR + LK E+ K++V+ N+ K +A ++ +QRLGV+YHF EI++ L+
Sbjct: 45 DAETEKRHQQLKEEVRKMIVAPMANSTQK-----LAFIDSVQRLGVSYHFTKEIEDELEN 99
Query: 69 IYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDA 128
IY + N D NDLY ++RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D
Sbjct: 100 IYHN--------NNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDV 151
Query: 129 KGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPR 188
+GLL LY+ASYLRV GE+IL+EA F PL ++V H+L+ + RG+PR
Sbjct: 152 RGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPR 211
Query: 189 LEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFAR 248
+EAR Y+S+Y+ D + N+ +LE AK+DFN+LQ LHR ELSEI RWWKD+DF KLP+AR
Sbjct: 212 VEARHYLSVYQ-DIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYAR 270
Query: 249 DRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWE 308
DR+VE YFWI GVYFEP+YS RK +TK+IA+AS++DD YD Y T EEL +T+AIERW+
Sbjct: 271 DRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD 330
Query: 309 VVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFH 368
+ +E+P+YM+ Y ALLDV +EM + + YAK A+ L ++Y VEAKW
Sbjct: 331 IKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTL 390
Query: 369 AKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARL 428
Y P+FEE N+ + GY MLA+ + VG+ D+ +T WA S PKII++S++I R
Sbjct: 391 QNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRF 449
Query: 429 DDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPP 488
DDV +K + R D S++ECY+++YGV+ +EA + VE W ++N+E P P
Sbjct: 450 MDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMP 509
Query: 489 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533
+ L SLNLAR+M VLY+ GDGYT K I SLL++P+ +
Sbjct: 510 TEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 330/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 46 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 100
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 101 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 153
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 154 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 213
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 214 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 272
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 273 YFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 332
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 333 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPP 392
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y +LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 393 VSEYLSNALATTTYYLLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 450
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 451 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 510
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 511 ILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 329/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 46 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 100
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 101 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 153
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 154 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 213
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 214 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 272
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 273 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 332
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 333 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 392
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 393 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 450
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 451 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 510
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 511 ILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 330/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
+ E LK + +L++ + L + + +++ ++RLG++YHFE EI E L IY+ N
Sbjct: 44 QEIEALKEQTRSMLLATG---RKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ--N 98
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 99 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 151
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 152 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
Query: 196 -SIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
SIY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 212 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 330
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 331 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 390
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 391 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 449 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 508
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 509 ILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 329/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 44 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 98
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 99 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 151
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 152 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 212 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 330
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 331 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 390
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 391 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 449 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 508
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 509 ILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 330/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
+ E LK + +L++ + L + + +++ ++RLG++YHFE EI E L IY+ N
Sbjct: 44 QEIEALKEQTRSMLLATG---RKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ--N 98
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 99 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 151
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 152 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
Query: 196 -SIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
SIY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 212 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 330
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 331 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 390
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 391 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 449 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 508
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 509 ILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 329/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 31 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 85
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 86 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 138
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 139 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 198
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 199 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 257
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 258 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 317
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 318 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 377
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 378 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 435
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 436 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 495
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 496 ILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/520 (42%), Positives = 329/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 44 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 98
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 99 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 151
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 152 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 212 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 330
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 331 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 390
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 391 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIIWRVIDDTAT 448
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 449 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 508
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 509 ILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/520 (42%), Positives = 328/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 44 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 98
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 99 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 151
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 152 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 212 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YF LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 271 YFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 330
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 331 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 390
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 391 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 449 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 508
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 509 ILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/520 (42%), Positives = 328/520 (63%), Gaps = 17/520 (3%)
Query: 16 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN 75
K E LK + +L++ L + + +++ ++RLG++YHFE EI + L IY+ N
Sbjct: 44 KEIEALKEQTRNMLLATGMK---LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--N 98
Query: 76 GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLY 135
NC NDL AL+FRLLRQHG+ +S +IF KF+DE G+FK L +D GLL LY
Sbjct: 99 SNC-------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLY 151
Query: 136 EASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYI 195
EAS++R ++ILE+A F +PL +QV H+LE LH+G+PR+E R +I
Sbjct: 152 EASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
Query: 196 S-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
S IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VEC
Sbjct: 212 SSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANE 314
YF LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T AI+RW++ +
Sbjct: 271 YFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR 330
Query: 315 LPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 374
LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y VE+ WF Y P
Sbjct: 331 LPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPP 390
Query: 375 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHT 434
E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S +I R+ DD T
Sbjct: 391 VSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEASVIIWRVIDDTAT 448
Query: 435 YKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 494
Y+VE+ RG + +EC ++ YG+S +EA K + M E W +INE + P ++L P
Sbjct: 449 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTP 508
Query: 495 SLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 533
LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 509 ILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 349 bits (895), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 188/496 (37%), Positives = 285/496 (57%), Gaps = 18/496 (3%)
Query: 45 IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN-----DLYIVALRFRLLR 99
+++ L+ LG++ F++EIKE L IY+ H C HNN DLY AL FRLLR
Sbjct: 60 LIHDLKYLGLSDFFQDEIKEILGVIYNEH---KCF----HNNEVEKMDLYFTALGFRLLR 112
Query: 100 QHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 158
QHG+ +S D+F F++EKG +FKA L D KG+L LYEAS+L +GE+ LE A EF
Sbjct: 113 QHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKC 172
Query: 159 XXXXXXXXXTPLVDQ----VEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAK 214
+ + + HSL++PLH + +EAR +I Y A N LI ELAK
Sbjct: 173 LQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAY-ARRPDMNPLIFELAK 231
Query: 215 LDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFM 274
L+FN++QA H+ EL ++SRWW + F KLPF RDRLVE +FW +G++ ++ RK
Sbjct: 232 LNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMA 291
Query: 275 TKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEME 334
II +A+VIDDIYDVYGTL+EL+LFT +RW+ + LP YMQ+CY+ + + + +
Sbjct: 292 ATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAA 351
Query: 335 DKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVE 394
++ + C+ Y ++++ LV+AYF EAKW+H+ Y P+ +E + + +S P +
Sbjct: 352 YDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISP 411
Query: 395 ALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQ 454
+ + +D I+ + +I RL DD+ T E RGD P +++CY+++
Sbjct: 412 TYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE 471
Query: 455 YGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTN 514
SEEEA +K ++ W ++N I P + + N+ R+ +Y +GDG+
Sbjct: 472 TNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGV 531
Query: 515 STGKTKDRIASLLVDP 530
KT + IA LL +P
Sbjct: 532 QHSKTYEHIAGLLFEP 547
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/513 (38%), Positives = 296/513 (57%), Gaps = 13/513 (2%)
Query: 21 LKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDV 80
L+AE+ + + + + TL E++ + +QRLG+ Y FE++I+ AL S G D
Sbjct: 49 LEAEVRREINNEKAEFLTLLELI---DNVQRLGLGYRFESDIRRALDRFVSS---GGFDG 102
Query: 81 NYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYL 140
L+ AL FRLLRQHG++VS + F F+D+ G F L D K +L LYEAS+L
Sbjct: 103 V--TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFL 160
Query: 141 RVQGENILEEACEFXXXXXXXXXXXXXTP-LVDQVEHSLEIPLHRGMPRLEARQYISIYE 199
++GENIL+EA F L +QV H+LE+PLHR RLEA I Y
Sbjct: 161 ALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYR 220
Query: 200 ADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWIL 259
N+++LELA LD+N++Q++++ +L E SRWW+ + ATKL FARDRL+E ++W +
Sbjct: 221 KKEDA-NQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAV 279
Query: 260 GVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYM 319
GV FEP+YS R + K+ + ++IDDIYDVYGTL+EL+LFT A+ERW+V A N+LP YM
Sbjct: 280 GVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYM 339
Query: 320 QVCYFALLDVVKEME-DKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 378
++C+ AL + + E+ D L +K Y K A L A+ EAKW + K PTF++
Sbjct: 340 KLCFLALYNTINEIAYDNLKDKGENILPYLTK-AWADLCNAFLQEAKWLYNKSTPTFDDY 398
Query: 379 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE 438
N+ SS P+ + A + I K ++ II S I RL +D+ + E
Sbjct: 399 FGNAWKSSSGPLQLIFAYFAVV-QNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAE 457
Query: 439 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 498
RG+ +SV CY++ G+SEE A + +++ W +N+E + ++ ++NL
Sbjct: 458 IARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINL 517
Query: 499 ARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 531
AR Y NGD +T+ T+ R+ S++ +P+
Sbjct: 518 ARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 186/493 (37%), Positives = 283/493 (57%), Gaps = 8/493 (1%)
Query: 43 VAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHNNDLYIVALRFRLLRQH 101
+ +++ LQR+G++ HF+NE KE L +IY D H N DLY +L FRLLR+H
Sbjct: 54 LELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK--EERDLYSTSLAFRLLREH 111
Query: 102 GYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXX 161
G++V+ ++F F++E+GEFK L++D +GLL LYEAS+L +GE LE A EF
Sbjct: 112 GFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEE 171
Query: 162 XXXXXXTP--LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNL 219
L+ ++ +SL+IPLH + R A +I Y N ++LELA LD N+
Sbjct: 172 KVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRK-RPDMNPVVLELAILDLNI 230
Query: 220 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIA 279
+QA + EL E RWW++ F KLPFARDRLVECYFW G+ ++++ R M K+ A
Sbjct: 231 VQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNA 290
Query: 280 IASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN 339
+ +VIDDIYDVYGTLEEL+ FT I RW++ + ++LP YMQ+C+ AL + V + ++
Sbjct: 291 LITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMK 350
Query: 340 KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL 399
++ + + Y +++ L Y VEA+WF+ + P+ EE +ENS S P + +
Sbjct: 351 EKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRV 410
Query: 400 EDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSE 459
D + TK +D ++R SS + RL DD+ T E RGD P S++CY+ Y SE
Sbjct: 411 TD-SFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASE 469
Query: 460 EEACNKIKGMVEIEWMNINEEIQDPNHP-PLQWLLPSLNLARMMVVLYQNGDGYTNSTGK 518
EA +K ++ W +N E + P ++ +++L RM ++Y NGDG+
Sbjct: 470 AEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPI 529
Query: 519 TKDRIASLLVDPL 531
++ L +P
Sbjct: 530 IHQQMTRTLFEPF 542
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 327 bits (839), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 186/472 (39%), Positives = 275/472 (58%), Gaps = 15/472 (3%)
Query: 45 IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYK 104
+++ L+RLG++ HFE EI E L + Y + N D DLY ALRFRLLRQ+ +
Sbjct: 89 LIDDLRRLGISCHFEREIVEILNSKY--YTNNEID-----ERDLYSTALRFRLLRQYDFS 141
Query: 105 VSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXX 163
VS ++F F++ KG +FK L +D +GLL LYEAS+L QGE L A +F
Sbjct: 142 VSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRV 201
Query: 164 XXXX-TPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 222
L+ +E +LE+P H + AR +I Y+ N +LELAKLDFN++QA
Sbjct: 202 LVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKR-RPDMNPTVLELAKLDFNMVQA 260
Query: 223 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIAS 282
+ EL E SRWW +LPF RDR+VECY+W GV ++ R +TKI A+ +
Sbjct: 261 QFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVT 320
Query: 283 VIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEP 342
IDD++D+YGTLEEL+LFT AI+RW++ + +LP YMQ+CY AL + V EM + +
Sbjct: 321 TIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKG 380
Query: 343 LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMS-SGYPMLAVEALVGLED 401
Y ++ GL+++Y +EAKW++ + P+ EE ++NS +S G P+L+ L D
Sbjct: 381 FDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS-HLFFRLTD 439
Query: 402 MAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 461
+I + A + I+R+S I RL DD+ T E ERGD P SV+CY+ + SEEE
Sbjct: 440 -SIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEE 498
Query: 462 ACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQN-GDGY 512
A ++ +++ W +N+E+ + ++ S NLARM +YQ+ DG+
Sbjct: 499 AREHVRSLIDQTWKMMNKEMMTSSFSKY-FVEVSANLARMAQWIYQHESDGF 549
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 179/527 (33%), Positives = 284/527 (53%), Gaps = 39/527 (7%)
Query: 39 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRF 95
L E + IV+ + RLG+ HFE EIKEAL +Y H N + + N DL AL F
Sbjct: 298 LLERLLIVDNIVRLGIYRHFEKEIKEALDYVY-RHWNER-GIGWGRLNPIADLETTALGF 355
Query: 96 RLLRQHGYKVSADIFKKFRDEKGEF---KAMLTNDAKGLLCLYEASYLRVQGENILEEAC 152
RLLR H Y VS IF F+D G+F D +L LY AS L GENIL+EA
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAK 415
Query: 153 EFXXXXXXXXXXXXXTP--------LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS- 203
F T L +++++L+ H +PR+EA++Y +Y D +
Sbjct: 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYAR 475
Query: 204 ----------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP---FARDR 250
NE LEL KLDFN++Q++H+ E+ ++ W++D + LP FAR+R
Sbjct: 476 IAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGLPLFTFARER 531
Query: 251 LVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV 310
+E YF + +EP+Y+ R TK+ + +V+DD+YD YGTL+ELKLFT A+ RW++
Sbjct: 532 PLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLS 591
Query: 311 AANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK 370
LP YM++CY D+V E+ + ++ + + ++ + + Y+ EA+W A+
Sbjct: 592 FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAE 651
Query: 371 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK---IIRSSSLIAR 427
YVPT +E ++N S G +L + ++ ++ +++ AL+ + P + +SLI+R
Sbjct: 652 YVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE-KVDYPGRRVLTELNSLISR 710
Query: 428 LDDDVHTYKVEQERGDAPSSVECYVQQYG-VSEEEACNKIKGMVEIEWMNINEEIQDPNH 486
L DD TYK E+ RG+ SS+ECY++ + +EEEA + I ++E + E P+
Sbjct: 711 LADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDD 770
Query: 487 PPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533
P R+ +V++++GDG+ S + KD I L++PLP+
Sbjct: 771 VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 168/514 (32%), Positives = 273/514 (53%), Gaps = 34/514 (6%)
Query: 46 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHG 102
V+ ++RLG+ HF+ EIKEAL +Y SH + + + N D+ A+ R+LR HG
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVY-SHWDER-GIGWARENPVPDIDDTAMGLRILRLHG 334
Query: 103 YKVSADIFKKFRDEKGEFKAMLTNDAKG---LLCLYEASYLRVQGENILEEA--C----- 152
Y VS+D+ K FRDE GEF L +G +L + S++ GE I+EEA C
Sbjct: 335 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYL 394
Query: 153 -EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS-------- 203
+ +VE++L+ P H+ MPRLEAR YI Y D+
Sbjct: 395 RNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYM 454
Query: 204 ---TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILG 260
NE LELAKLDFN +Q++H+ EL ++ RWWK F T L F R+R+ E YF
Sbjct: 455 MPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPAS 513
Query: 261 VYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQ 320
FEP++S R+ TK ++DD+YD +G+L++LKLFT +++RW++ +++P+ M+
Sbjct: 514 FIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMK 573
Query: 321 VCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVE 380
+C+ + ++ + ++ + Y + K ++AY EA+W AKYVP+F E +E
Sbjct: 574 ICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIE 633
Query: 381 NSTMSSGY-PMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ 439
N+++S ++ + AL E +T L + ++ L RL +D TY+ E+
Sbjct: 634 NASVSIALGTVVLISALFTGE--VLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAER 691
Query: 440 ERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 498
+G+ S+++CY++ + +SEEEA + ++E +N E + P + L
Sbjct: 692 GQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKRL-VFET 750
Query: 499 ARMMVVLYQNGDGYTNSTG-KTKDRIASLLVDPL 531
AR+M + Y GDG T S + K+ + + L P+
Sbjct: 751 ARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 158/514 (30%), Positives = 257/514 (50%), Gaps = 26/514 (5%)
Query: 39 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDH-NNDLYIVALRFRL 97
L E +++V+ ++ LG+ HF+ EIK AL +Y D DL AL R
Sbjct: 246 LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRT 305
Query: 98 LRQHGYKVSADIFKKFRDEKGEFKAMLTN---DAKGLLCLYEASYLRVQGENILEEACEF 154
LR HGY VS+D+ F+DE G F + + + ++ L+ AS L E +++A +F
Sbjct: 306 LRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKF 365
Query: 155 XX---XXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADN--------- 202
T L ++E+ +E P H +PRLEAR YI Y+ DN
Sbjct: 366 AEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYD-DNYVWQRKTLY 424
Query: 203 ---STRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWIL 259
S N LELAKLDFN++Q+LH+ EL ++RWWK+ A + F R R+ E YF
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF--S 481
Query: 260 GVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYM 319
FEP+YS TR TKI + + DD+ D++ TL+ELK FT ++RW+ +E+P+ M
Sbjct: 482 SATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECM 541
Query: 320 QVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECV 379
Q C+ +++E+ + +V + + + ++ + Y E +W A Y+PTFEE +
Sbjct: 542 QTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYL 601
Query: 380 ENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ 439
+ +S G ++ ++ + ++ + ++ + SL RL +D TY+ E+
Sbjct: 602 KTYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEK 660
Query: 440 ERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLN 497
RG S + CY++ G +EE+A I +V+ + E P N P+ N
Sbjct: 661 ARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFN 720
Query: 498 LARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 531
L + + Y+ DGY + + KD I + +DP+
Sbjct: 721 LRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 130/270 (48%), Gaps = 26/270 (9%)
Query: 39 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHV-NGNCDVNYDHNNDLYIVALRFRL 97
L E + IV++LQRLG++ +FE EIKE L ++ NG C H D+ A+ FRL
Sbjct: 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRL 304
Query: 98 LRQHGYKVSADIFKKFRDEKGEFKAML--TNDA-KGLLCLYEASYLRVQGENILEEACEF 154
LRQHGY+VSAD+FK F E GEF + +N A G+ LY AS L E IL+ A EF
Sbjct: 305 LRQHGYQVSADVFKNFEKE-GEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEF 363
Query: 155 XXXXXXXXXXXX--------XTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS--- 203
L ++ +LEIP + +PR+E R YI Y +N
Sbjct: 364 SYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWI 423
Query: 204 ---------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 254
N LELAK D+N QA H++E +W+++ + ++ R L+EC
Sbjct: 424 GKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSELLEC 482
Query: 255 YFWILGVYFEPKYSTTRKFMTKIIAIASVI 284
Y+ FE + S R K + I
Sbjct: 483 YYLAAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins
Length = 104
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 13 EVEKRFETLKAEIEKLLVSNNTAWKTL--EEIVAIVNQLQRL-GVAYHF-ENEIKEALQT 68
++++R E LKAEI+KL ++ ++L EE +A++ Q+Q G F +++++ A QT
Sbjct: 29 DLDQRTEDLKAEIDKLATEYXSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAXQT 88
Query: 69 --IYDSHV 74
D H+
Sbjct: 89 YEXVDKHI 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,387,306
Number of Sequences: 62578
Number of extensions: 613533
Number of successful extensions: 1600
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 26
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)