Query 009479
Match_columns 533
No_of_seqs 197 out of 895
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 4E-159 1E-163 1292.5 52.1 512 7-533 41-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1E-158 5E-163 1287.0 49.9 509 8-533 38-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 5E-158 2E-162 1285.3 47.8 515 7-532 35-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 5E-154 2E-158 1260.7 52.7 518 7-532 22-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 4E-153 1E-157 1253.0 48.3 517 7-532 26-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 3E-152 1E-156 1249.6 43.3 510 7-532 55-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 3E-143 9E-148 1214.8 46.7 492 38-533 297-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 8E-143 3E-147 1203.4 49.7 490 38-533 245-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 1E-142 4E-147 1205.4 47.8 490 38-532 269-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 5E-107 2E-111 904.5 37.5 453 16-532 221-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 5.1E-51 1.8E-55 422.2 19.1 251 221-481 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 1.5E-48 5.2E-53 396.9 21.1 242 223-481 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 4.9E-47 1.7E-51 389.7 21.6 244 221-481 25-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 7.8E-46 2.7E-50 390.7 21.1 243 231-481 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.8E-33 6.2E-38 299.8 20.0 245 227-481 130-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 8.5E-19 2.9E-23 183.3 15.5 228 230-479 34-275 (374)
17 3acx_A Dehydrosqualene synthas 89.4 17 0.00059 35.7 18.8 193 269-492 38-244 (293)
18 3ipi_A Geranyltranstransferase 89.1 1.9 6.4E-05 43.1 10.3 142 345-502 128-279 (295)
19 3lmd_A Geranylgeranyl pyrophos 88.0 3.6 0.00012 42.3 11.7 103 345-455 161-275 (360)
20 4hd1_A Squalene synthase HPNC; 84.6 32 0.0011 33.8 18.9 186 271-492 41-239 (294)
21 3oyr_A Trans-isoprenyl diphosp 82.0 15 0.0005 37.4 12.9 87 344-437 151-239 (345)
22 3mzv_A Decaprenyl diphosphate 81.8 21 0.0007 36.2 14.0 87 344-437 139-227 (341)
23 3rmg_A Octaprenyl-diphosphate 81.1 12 0.00041 37.8 11.9 88 344-437 133-221 (334)
24 1rtr_A Geranyltranstransferase 80.6 7.9 0.00027 38.6 10.2 111 354-479 148-271 (301)
25 3ts7_A Geranyltranstransferase 78.6 18 0.00061 36.5 12.1 112 354-479 158-282 (324)
26 2ftz_A Geranyltranstransferase 78.3 21 0.00072 35.2 12.4 120 345-479 135-264 (284)
27 3p8l_A Geranyltranstransferase 77.6 12 0.00042 37.2 10.5 110 355-479 157-279 (302)
28 3m0g_A Farnesyl diphosphate sy 77.5 12 0.00042 37.1 10.5 111 354-479 147-269 (297)
29 1wy0_A Geranylgeranyl pyrophos 77.3 19 0.00064 36.4 12.0 87 345-437 138-225 (342)
30 2h8o_A Geranyltranstransferase 77.0 15 0.00051 37.2 11.1 111 354-479 192-315 (335)
31 3lsn_A Geranyltranstransferase 76.9 17 0.00059 36.2 11.4 123 356-500 154-289 (304)
32 3p8r_A Geranyltranstransferase 74.2 12 0.00042 37.3 9.4 112 354-479 158-282 (302)
33 3pko_A Geranylgeranyl pyrophos 74.2 36 0.0012 34.3 13.1 102 345-454 144-258 (334)
34 4f62_A Geranyltranstransferase 70.7 26 0.00088 35.2 10.9 111 355-479 152-275 (317)
35 4dhd_A Polyprenyl synthetase; 70.7 32 0.0011 35.0 11.8 86 345-436 133-231 (358)
36 3apz_A Geranyl diphosphate syn 68.1 30 0.001 35.0 10.9 88 344-437 153-241 (348)
37 3npk_A Geranyltranstransferase 64.6 53 0.0018 32.4 11.6 113 353-479 144-266 (291)
38 1wmw_A Geranylgeranyl diphosph 61.6 88 0.003 31.2 12.9 84 345-436 131-218 (330)
39 3lom_A Geranyltranstransferase 60.1 62 0.0021 32.3 11.3 113 354-479 158-283 (313)
40 3uca_A Geranyltranstransferase 59.1 43 0.0015 33.7 9.9 112 354-479 180-304 (324)
41 2j1p_A Geranylgeranyl pyrophos 58.5 15 0.00053 36.3 6.4 108 355-479 161-272 (293)
42 1rqj_A Geranyltranstransferase 57.8 53 0.0018 32.4 10.3 113 354-479 152-276 (299)
43 3pde_A Farnesyl-diphosphate sy 57.1 47 0.0016 33.1 9.7 110 355-479 156-278 (309)
44 3nf2_A Putative polyprenyl syn 56.8 52 0.0018 33.3 10.2 86 345-436 144-230 (352)
45 3llw_A Geranyltranstransferase 53.8 32 0.0011 34.4 7.9 113 354-479 159-281 (311)
46 1pd3_A Nonstructural protein N 53.2 11 0.00038 27.4 3.1 32 17-52 17-48 (58)
47 3tc1_A Octaprenyl pyrophosphat 51.3 1.6E+02 0.0053 29.3 12.5 84 344-437 122-207 (315)
48 3aqb_B Component B of hexapren 50.0 2E+02 0.0069 28.4 15.1 89 344-437 130-218 (325)
49 3vj8_A Squalene synthase; farn 40.0 3E+02 0.01 27.5 17.2 224 270-513 38-284 (343)
50 3lk5_A Geranylgeranyl pyrophos 39.7 3.2E+02 0.011 27.8 13.7 79 351-436 182-263 (380)
51 2qis_A Farnesyl pyrophosphate 38.8 1.9E+02 0.0065 29.3 11.2 88 345-437 177-271 (374)
52 1uby_A FPS, farnesyl diphospha 38.8 1.1E+02 0.0038 31.1 9.3 88 345-437 170-264 (367)
53 2e8v_A Geranylgeranyl pyrophos 35.5 67 0.0023 32.3 7.0 87 345-437 132-221 (340)
54 2azj_A Geranylgeranyl pyrophos 34.8 1.2E+02 0.0041 29.8 8.5 132 345-500 136-274 (289)
55 1v4e_A Octoprenyl-diphosphate 33.4 1.1E+02 0.0038 30.1 8.1 84 344-438 127-212 (299)
56 2q80_A Geranylgeranyl pyrophos 30.5 2E+02 0.007 28.1 9.5 86 344-437 111-196 (301)
57 1yhl_A Farnesyl pyrophosphate 29.7 1.7E+02 0.0059 29.4 9.0 88 345-437 152-257 (362)
58 3kra_B Geranyl diphosphate syn 28.4 61 0.0021 31.6 5.1 70 355-432 150-221 (274)
59 2her_A Fragment, farnesyl pyro 25.9 1.3E+02 0.0045 30.6 7.3 86 345-436 169-260 (368)
60 1c07_A Protein (epidermal grow 25.0 1.9E+02 0.0064 22.5 6.8 73 23-108 10-86 (95)
61 3mav_A Farnesyl pyrophosphate 24.5 4.4E+02 0.015 26.7 11.0 89 345-437 179-293 (395)
62 3fau_A NEDD4-binding protein 2 23.6 62 0.0021 25.2 3.4 23 455-477 6-28 (82)
63 2ee7_A Sperm flagellar protein 22.1 72 0.0025 27.5 3.8 66 223-289 12-85 (127)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.8e-159 Score=1292.55 Aligned_cols=512 Identities=48% Similarity=0.862 Sum_probs=484.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhh-ccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 009479 7 RYYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHN 85 (533)
Q Consensus 7 ~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~ 85 (533)
.+|..+.+.+|+++||++||+||.+ .+ |++++|+|||+||||||+|||++||+++|+++|++ + ... .
T Consensus 41 ~~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~---~--~~~---~ 108 (554)
T 3g4d_A 41 DKNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN---N--NDA---E 108 (554)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS---C--CCT---T
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc---c--CCC---C
Confidence 4677889999999999999999975 45 99999999999999999999999999999999985 1 111 3
Q ss_pred CchHHHHHHHHHhhhcCcceehhhhhcccccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc
Q 009479 86 NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH 165 (533)
Q Consensus 86 ~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~ 165 (533)
.||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||++||++||++++.+
T Consensus 109 ~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~ 188 (554)
T 3g4d_A 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVAS 188 (554)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCh
Q 009479 166 LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP 245 (533)
Q Consensus 166 ~~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~ 245 (533)
++++|+++|+|||+.|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||++++|||+++||.++||
T Consensus 189 ~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~ 267 (554)
T 3g4d_A 189 LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLP 267 (554)
T ss_dssp CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCT
T ss_pred cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCC
Confidence 888999999999999999999999999999999999 9999999999999999999999999999999999999988999
Q ss_pred hhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHH
Q 009479 246 FARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFA 325 (533)
Q Consensus 246 faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~a 325 (533)
|||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+
T Consensus 268 faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~a 347 (554)
T 3g4d_A 268 YARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKA 347 (554)
T ss_dssp TCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcC
Q 009479 326 LLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAI 404 (533)
Q Consensus 326 l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~l 404 (533)
|+++++|+++++.+ |++ ++++|++++|+++++||++||+|+.+||+||+||||+||++|+|+++++++++++||+. +
T Consensus 348 l~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-l 425 (554)
T 3g4d_A 348 LLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-V 425 (554)
T ss_dssp HHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTT-S
T ss_pred HHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCC-C
Confidence 99999999999888 888 89999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009479 405 TKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP 484 (533)
Q Consensus 405 p~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~ 484 (533)
|+++++|++++|+|+++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|+++
T Consensus 426 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 505 (554)
T 3g4d_A 426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP 505 (554)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 009479 485 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533 (533)
Q Consensus 485 ~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~~ 533 (533)
+++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 506 ~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 506 TEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 8999999999999999999999999999999778999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.4e-158 Score=1287.00 Aligned_cols=509 Identities=44% Similarity=0.820 Sum_probs=489.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhh-ccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 009479 8 YYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN 86 (533)
Q Consensus 8 ~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~~ 86 (533)
+|..+.+.+|+++||++||+||.+ .+ |++++|+|||+||||||+|||++||+++|+++|++|.. ..
T Consensus 38 ~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~---------~~ 104 (550)
T 3m00_A 38 NQVAEKYAKEIEALKEQTRNMLLATGM----KLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN---------CN 104 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC---------CS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc---------CC
Confidence 556778999999999999999975 45 99999999999999999999999999999999998721 36
Q ss_pred chHHHHHHHHHhhhcCcceehhhhhcccccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhcC
Q 009479 87 DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHL 166 (533)
Q Consensus 87 dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~ 166 (533)
||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||++||++||++++.++
T Consensus 105 dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~ 184 (550)
T 3m00_A 105 DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 184 (550)
T ss_dssp SHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCchHHHHHHHccCCccCCcchHHHhhhHH-hhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCh
Q 009479 167 STPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP 245 (533)
Q Consensus 167 ~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~-~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~ 245 (533)
+++|+++|+|||+.|||+++||+|||+||+ +|+++ +++|++||||||||||+||++||+||++++|||+++||.++||
T Consensus 185 ~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~ 263 (550)
T 3m00_A 185 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKE-QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLP 263 (550)
T ss_dssp CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHST
T ss_pred CccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccC
Confidence 889999999999999999999999999999 99999 9999999999999999999999999999999999999988999
Q ss_pred hhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHH
Q 009479 246 FARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFA 325 (533)
Q Consensus 246 faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~a 325 (533)
|||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+
T Consensus 264 faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~a 343 (550)
T 3m00_A 264 YARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 343 (550)
T ss_dssp TSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHH
T ss_pred cHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcC
Q 009479 326 LLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAI 404 (533)
Q Consensus 326 l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~l 404 (533)
|+++++|+++++.+ |++ ++++|++++|+++++||++||+|+++||+||+||||+||++|+|++++++++++|+ +. +
T Consensus 344 l~~~~~E~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~-l 420 (550)
T 3m00_A 344 ILDLYKDYEKELSSAGRS-HIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KS-A 420 (550)
T ss_dssp HHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TT-C
T ss_pred HHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CC-C
Confidence 99999999998888 888 89999999999999999999999999999999999999999999999999998887 66 9
Q ss_pred cHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009479 405 TKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP 484 (533)
Q Consensus 405 p~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~ 484 (533)
|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||++|++|+++
T Consensus 421 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 500 (550)
T 3m00_A 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 500 (550)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHHHhhhcccCCC
Q 009479 485 NHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDPLPM 533 (533)
Q Consensus 485 ~~~p~~~~~~~lN~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~ll~~pi~~ 533 (533)
+++|++|+++++|+||++++||+++ ||||.|+..||++|++||++|||+
T Consensus 501 ~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 501 TPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp CSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 8999999999999999999999998 999999768999999999999996
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=5.2e-158 Score=1285.32 Aligned_cols=515 Identities=37% Similarity=0.653 Sum_probs=487.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 009479 7 RYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN 86 (533)
Q Consensus 7 ~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~~ 86 (533)
.+|..+.+++|+++||++||+||.+.++ +++++|+|||+||||||+|||++||+++|++||+. ..++++ . ..
T Consensus 35 ~~~~~~~~~~~~e~Lk~eVr~~l~~~~~---~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~-~~~~~~-~---~~ 106 (555)
T 3n0f_A 35 TDESIEVYKDKAKKLEAEVRREINNEKA---EFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSS-GGFDGV-T---KT 106 (555)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCTTS---CHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHT-CHHHHH-T---TT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhh-cccccc-c---cC
Confidence 4677889999999999999999975321 79999999999999999999999999999999973 001112 1 36
Q ss_pred chHHHHHHHHHhhhcCcceehhhhhcccccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhh-c
Q 009479 87 DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS-H 165 (533)
Q Consensus 87 dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~-~ 165 (533)
||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||++.+. +
T Consensus 107 DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~ 186 (555)
T 3n0f_A 107 SLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEK 186 (555)
T ss_dssp CHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHH
T ss_pred CHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999765 5
Q ss_pred CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCh
Q 009479 166 LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP 245 (533)
Q Consensus 166 ~~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~ 245 (533)
++++|+++|++||++|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||++++|||+++||.+++|
T Consensus 187 ~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~-~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~ 265 (555)
T 3n0f_A 187 IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK-EDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLH 265 (555)
T ss_dssp HCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCT
T ss_pred CCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCC
Confidence 688899999999999999999999999999999999 9999999999999999999999999999999999999988999
Q ss_pred hhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHH
Q 009479 246 FARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFA 325 (533)
Q Consensus 246 faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~a 325 (533)
|||||+++||||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+
T Consensus 266 faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~a 345 (555)
T 3n0f_A 266 FARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLA 345 (555)
T ss_dssp TCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcC
Q 009479 326 LLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAI 404 (533)
Q Consensus 326 l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~l 404 (533)
|++++++++.++.+ ++. ++.++++++|+++++||++||+|+.+||+||+||||+||.+|+|+++++++++++||.. +
T Consensus 346 L~~~~~e~~~~~~~~~g~-~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-l 423 (555)
T 3n0f_A 346 LYNTINEIAYDNLKDKGE-NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQN-I 423 (555)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSS-C
T ss_pred HHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCC-C
Confidence 99999999998888 777 79999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009479 405 TKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP 484 (533)
Q Consensus 405 p~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~ 484 (533)
|+++++|+.++|+|+++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|+++
T Consensus 424 t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 503 (555)
T 3n0f_A 424 KKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGG 503 (555)
T ss_dssp CHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 009479 485 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 532 (533)
Q Consensus 485 ~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~ 532 (533)
+++|++|+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 504 ~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 504 SLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999876899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=4.6e-154 Score=1260.70 Aligned_cols=518 Identities=37% Similarity=0.633 Sum_probs=499.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 009479 7 RYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN 86 (533)
Q Consensus 7 ~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~~ 86 (533)
++|..++++++++.||++||+|+.+.. |++++|+|||+||||||+|||++||+++|++||++|..+++|+... ..
T Consensus 22 ~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~-~~ 96 (543)
T 2ong_A 22 SDYKEDKHVIRASELVTLVKMELEKET----DQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKE-ER 96 (543)
T ss_dssp CSSCSTHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCC-CC
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccc-cC
Confidence 457778999999999999999998776 8999999999999999999999999999999999985454443311 36
Q ss_pred chHHHHHHHHHhhhcCcceehhhhhcccccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc-
Q 009479 87 DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH- 165 (533)
Q Consensus 87 dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~- 165 (533)
||++|||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++|||+|||||++||++||++++.+
T Consensus 97 dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~ 176 (543)
T 2ong_A 97 DLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEG 176 (543)
T ss_dssp CHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCC
Q 009479 166 L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKL 244 (533)
Q Consensus 166 ~-~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l 244 (533)
+ +++|+++|++||++|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||++++|||+++||.+++
T Consensus 177 ~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl 255 (543)
T 2ong_A 177 GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR-PDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKL 255 (543)
T ss_dssp CSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred CCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccC-ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 5 78999999999999999999999999999999999 999999999999999999999999999999999999998789
Q ss_pred hhhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHH
Q 009479 245 PFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYF 324 (533)
Q Consensus 245 ~faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~ 324 (533)
||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.
T Consensus 256 ~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~ 335 (543)
T 2ong_A 256 PFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFL 335 (543)
T ss_dssp CSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCc
Q 009479 325 ALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMA 403 (533)
Q Consensus 325 al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~ 403 (533)
++++++++++.++.+ +++ +++++++++|++++++|++||+|+.+||+||++|||++|.+|+|+++++++++++||..
T Consensus 336 aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~- 413 (543)
T 2ong_A 336 ALNNFVDDTSYDVMKEKGV-NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDS- 413 (543)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCC-
Confidence 999999999999888 777 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh-c
Q 009479 404 ITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI-Q 482 (533)
Q Consensus 404 lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~-l 482 (533)
+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++| +
T Consensus 414 ~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l 493 (543)
T 2ong_A 414 FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVS 493 (543)
T ss_dssp CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 009479 483 DPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 532 (533)
Q Consensus 483 ~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~ 532 (533)
+++++|++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 494 ~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 494 KDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred CCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 98899999999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=3.8e-153 Score=1252.97 Aligned_cols=517 Identities=38% Similarity=0.670 Sum_probs=482.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 009479 7 RYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN 86 (533)
Q Consensus 7 ~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~~ 86 (533)
++|..++++++++.||++||+|+.+.. |++++|+|||+||||||+|||++||+++|++||++|..+ +.+.....
T Consensus 26 ~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~--~~~~~~~~ 99 (549)
T 1n1b_A 26 TPYTEERHLDRKAELIVQVRILLKEKM----EPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCF--HNNEVEKM 99 (549)
T ss_dssp CSTTSHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHH--HHCCCCSC
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccc--cccccccC
Confidence 457778999999999999999998766 899999999999999999999999999999999986110 00100146
Q ss_pred chHHHHHHHHHhhhcCcceehhhhhccccccc-ccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc
Q 009479 87 DLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH 165 (533)
Q Consensus 87 dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g-~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~ 165 (533)
||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||+++|||+|||||++||++||++++.+
T Consensus 100 dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~ 179 (549)
T 1n1b_A 100 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDE 179 (549)
T ss_dssp CHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC-
T ss_pred ChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999875
Q ss_pred ---C-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCC
Q 009479 166 ---L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFA 241 (533)
Q Consensus 166 ---~-~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~ 241 (533)
+ +++|+++|++||++|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||++++|||+++||.
T Consensus 180 ~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~ 258 (549)
T 1n1b_A 180 GGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR-PDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFP 258 (549)
T ss_dssp -----CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5 78899999999999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred CCChhhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHH
Q 009479 242 TKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQV 321 (533)
Q Consensus 242 ~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~ 321 (533)
+++||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+
T Consensus 259 ~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~ 338 (549)
T 1n1b_A 259 EKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQL 338 (549)
T ss_dssp HHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcC
Q 009479 322 CYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLE 400 (533)
Q Consensus 322 ~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g 400 (533)
||.++++++++++.++.+ +++ ++..+++++|++++++|++||+|+.+||+||++|||++|.+|+|+++++++++++||
T Consensus 339 ~~~aL~d~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g 417 (549)
T 1n1b_A 339 CYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFA 417 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcC
Confidence 999999999999999877 777 799999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcHHH-HHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 401 DMAITKRA-LDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 401 ~~~lp~e~-~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
.. +|+++ ++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||++|+
T Consensus 418 ~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 418 NA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp TC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 009479 480 EIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 532 (533)
Q Consensus 480 e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~ 532 (533)
+|++++++|++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 497 e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 497 AIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99998899999999999999999999999999999977899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.8e-152 Score=1249.62 Aligned_cols=510 Identities=37% Similarity=0.633 Sum_probs=468.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHH-hhcCCCCCCCCCCCC
Q 009479 7 RYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHN 85 (533)
Q Consensus 7 ~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~-~~~~~~~~~~~~~~~ 85 (533)
.+|..++++++++.||++||+||.+.. |++++|+|||+||||||+|||++||+++|++|| +++.. . .
T Consensus 55 ~~~~~~~~~~~~~~Lk~~Vr~~~~~~~----d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~-----~---~ 122 (569)
T 2j5c_A 55 SEYKEEKHLMRAAGMIDQVKMMLQEEV----DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEI-----D---E 122 (569)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCS-----C---T
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCc-----c---c
Confidence 356667899999999999999998776 899999999999999999999999999999999 76411 1 5
Q ss_pred CchHHHHHHHHHhhhcCcceehhhhhccccccc-ccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhh
Q 009479 86 NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS 164 (533)
Q Consensus 86 ~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g-~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~ 164 (533)
.||++|||+|||||||||+||||||++|||++| +|++++++||+|||||||||||++|||+|||||++||++||++++.
T Consensus 123 ~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~ 202 (569)
T 2j5c_A 123 RDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVL 202 (569)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC-
T ss_pred CChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999 9999999999999999999999999999999999999999999887
Q ss_pred cC-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCC
Q 009479 165 HL-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 243 (533)
Q Consensus 165 ~~-~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~ 243 (533)
++ +++|+++|++||++|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||++++|||+++||.++
T Consensus 203 ~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~k 281 (569)
T 2j5c_A 203 VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR-PDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHE 281 (569)
T ss_dssp ---CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC-ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77 78899999999999999999999999999999999 99999999999999999999999999999999999999888
Q ss_pred ChhhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHH
Q 009479 244 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCY 323 (533)
Q Consensus 244 l~faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~ 323 (533)
+||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||
T Consensus 282 l~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~ 361 (569)
T 2j5c_A 282 LPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICY 361 (569)
T ss_dssp CC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCC
Q 009479 324 FALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDM 402 (533)
Q Consensus 324 ~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~ 402 (533)
.++++++++++.++.+ +++ +++++++++|++++++|++||+|+.+||+||++|||++|.+|+|+++++++++++||..
T Consensus 362 ~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~ 440 (569)
T 2j5c_A 362 LALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDS 440 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCC
Confidence 9999999999999888 777 79999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 009479 403 AITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 482 (533)
Q Consensus 403 ~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l 482 (533)
+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|+
T Consensus 441 -lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l 519 (569)
T 2j5c_A 441 -IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMM 519 (569)
T ss_dssp -CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHHHhhhcccCC
Q 009479 483 DPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDPLP 532 (533)
Q Consensus 483 ~~~~~p~~~~~~~lN~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~ll~~pi~ 532 (533)
+ +++|++|+++++|+||+++++|+++ ||||.|++.||++|++||++|||
T Consensus 520 ~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 520 T-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp H-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred c-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9 8899999999999999999999999 99999977899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.6e-143 Score=1214.77 Aligned_cols=492 Identities=36% Similarity=0.635 Sum_probs=460.7
Q ss_pred ChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHhhhcCcceehhhhhccccc
Q 009479 38 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 116 (533)
Q Consensus 38 d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~-~~~~~~~~~~~~~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~ 116 (533)
|++++|++||+||||||+|||++||+++|+++|++| ++|+++++.+...||++|||+|||||||||+||||||++|+|+
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 376 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhc
Confidence 899999999999999999999999999999999999 6666543211146999999999999999999999999999999
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc--------CCCchHHHHHHHccCCccCC
Q 009479 117 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 185 (533)
Q Consensus 117 ~g~F~~~l---~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 185 (533)
+|+|++++ .+|++||||||||||+++|||+|||||++||++||++.+.+ ++++|++||+|||++|||++
T Consensus 377 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 377 NGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp --CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 99999865 69999999999999999999999999999999999998753 23789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc------------ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhh
Q 009479 186 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 253 (533)
Q Consensus 186 ~~r~e~r~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdR~~e 253 (533)
+||+|||+||++|+++ +. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++|
T Consensus 457 l~Rlear~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 534 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLE 534 (817)
T ss_dssp CHHHHHHHHHTTCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHH
T ss_pred ChHHHHHHHHHHhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999999
Q ss_pred hhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHH
Q 009479 254 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEM 333 (533)
Q Consensus 254 ~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~ 333 (533)
||||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|+
T Consensus 535 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~ 614 (817)
T 3sdr_A 535 FYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEV 614 (817)
T ss_dssp HHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhh-HHHHHHHhcCCCcCcHHHHHh
Q 009479 334 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM-LAVEALVGLEDMAITKRALDW 411 (533)
Q Consensus 334 ~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~-~~~~~~~~~g~~~lp~e~~e~ 411 (533)
+.++.+ ++. ++.++++++|++++++|++||+|+.+||+||+||||+||.+|+|+++ ++.++++++|.. +|+++++|
T Consensus 615 ~~~~~~~~g~-~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~-lt~e~~e~ 692 (817)
T 3sdr_A 615 AWEAEKEQGR-ELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQL-LSQEALEK 692 (817)
T ss_dssp HHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCC-CCHHHHHT
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCC-CCHHHHhc
Confidence 998887 666 79999999999999999999999999999999999999999999999 888889999999 99999999
Q ss_pred hc--chhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 009479 412 AI--SVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPP 488 (533)
Q Consensus 412 ~~--~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~-gvs~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p 488 (533)
+. +.|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+||++|++++++|
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p 772 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 76 456999999999999999999999999999999999999999 799999999999999999999999999988999
Q ss_pred hhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 009479 489 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533 (533)
Q Consensus 489 ~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~~ 533 (533)
++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 773 ~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=8.5e-143 Score=1203.42 Aligned_cols=490 Identities=32% Similarity=0.559 Sum_probs=460.6
Q ss_pred ChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHhhhcCcceehhhhhccccc
Q 009479 38 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 116 (533)
Q Consensus 38 d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~-~~~~~~~~~~~~~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~ 116 (533)
|++++|++||+||||||+|||++||+++|+++|++| ++|+++++.+...||++|||+|||||||||+||||||++|+|+
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 324 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDE 324 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcC
Confidence 899999999999999999999999999999999999 6665543211146999999999999999999999999999999
Q ss_pred ccccccc---cccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhh---cCCCchHHHHHHHccCCccCCcchHH
Q 009479 117 KGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS---HLSTPLVDQVEHSLEIPLHRGMPRLE 190 (533)
Q Consensus 117 ~g~F~~~---l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~---~~~~~l~~~V~~aL~~P~~~~~~r~e 190 (533)
+|+|+++ +.+|++||||||||||+++|||+|||||++||++||++++. .++++|++||+|||++|||+++||+|
T Consensus 325 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 404 (764)
T 3p5p_A 325 NGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLE 404 (764)
T ss_dssp TSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHH
T ss_pred CCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHH
Confidence 9999974 68999999999999999999999999999999999999876 35788999999999999999999999
Q ss_pred HhhhHHhhhcCCcc------------ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhh
Q 009479 191 ARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWI 258 (533)
Q Consensus 191 ~r~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdR~~e~yf~~ 258 (533)
||+||++|+++ +. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++|||||+
T Consensus 405 ar~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~ 482 (764)
T 3p5p_A 405 ARSYIDSYDDN-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSS 482 (764)
T ss_dssp HHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHH
Confidence 99999999988 65 499999999999999999999999999999999999 69999999999999999
Q ss_pred hccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHh
Q 009479 259 LGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLV 338 (533)
Q Consensus 259 ~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~ 338 (533)
+| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|++.++.
T Consensus 483 ~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~ 560 (764)
T 3p5p_A 483 AT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVV 560 (764)
T ss_dssp CC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhH
Q 009479 339 N-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK 417 (533)
Q Consensus 339 ~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~ 417 (533)
+ ++. ++.+|++++|++++++|++||+|+.+||+||+||||+||.+|+|++++++.+++++|.. +|+++++|+..+|+
T Consensus 561 ~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~ 638 (764)
T 3p5p_A 561 KVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPSN 638 (764)
T ss_dssp HHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSC-CCGGGHHHHSTTSH
T ss_pred HhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCC-CcHHHHhhhhhhHH
Confidence 7 555 79999999999999999999999999999999999999999999999999999999999 99999999766699
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCChhHHHHH
Q 009479 418 IIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQD-PNHPPLQWLLPS 495 (533)
Q Consensus 418 l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~-gvs~eeA~~~i~~~i~~~wk~ln~e~l~-~~~~p~~~~~~~ 495 (533)
|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++ ++++|++|++++
T Consensus 639 l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~ 718 (764)
T 3p5p_A 639 MFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFI 718 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 7999999999999999999999999997 788999999999
Q ss_pred HHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 009479 496 LNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533 (533)
Q Consensus 496 lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~~ 533 (533)
+|+||++++||+++||||.|+..||++|++||++||++
T Consensus 719 ~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 719 FNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 99999999999999999998767999999999999984
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.1e-142 Score=1205.41 Aligned_cols=490 Identities=33% Similarity=0.593 Sum_probs=463.4
Q ss_pred ChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHhhhcCcceehhhhhccccc
Q 009479 38 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 116 (533)
Q Consensus 38 d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~-~~~~~~~~~~~~~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~ 116 (533)
|++++|++||+||||||+|||++||+++|+++|++| ++|++++......||++|||+|||||||||+||||||++|+|+
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 348 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 899999999999999999999999999999999999 6565443211146999999999999999999999999999999
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc--------CCCchHHHHHHHccCCccCC
Q 009479 117 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 185 (533)
Q Consensus 117 ~g~F~~~l---~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 185 (533)
+|+|++++ .+|++||||||||||+++|||+|||||++||++||++.+.. ++++|++||+|||++|||++
T Consensus 349 ~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp TSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 99999866 69999999999999999999999999999999999998752 56789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc------------ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhh
Q 009479 186 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 253 (533)
Q Consensus 186 ~~r~e~r~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdR~~e 253 (533)
+||+|||+||++|+++ +. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++|
T Consensus 429 l~RleaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 506 (785)
T 3s9v_A 429 MPRLEARSYIENYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTE 506 (785)
T ss_dssp CHHHHHHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHH
T ss_pred chHHHHHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999999
Q ss_pred hhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHH
Q 009479 254 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEM 333 (533)
Q Consensus 254 ~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~ 333 (533)
||||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|+
T Consensus 507 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei 586 (785)
T 3s9v_A 507 IYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDI 586 (785)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhh
Q 009479 334 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWA 412 (533)
Q Consensus 334 ~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~ 412 (533)
+.++.+ ++. ++.+|++++|++++++|++||+|+.+||+||+||||+||++|+|+++++++++++||.. +|+++++|+
T Consensus 587 ~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~-lt~e~~e~~ 664 (785)
T 3s9v_A 587 AKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEV-LTDEVLSKI 664 (785)
T ss_dssp HHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSC-CCHHHHTTT
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCC-CCHHHHhcc
Confidence 998877 555 79999999999999999999999999999999999999999999999999999999999 999999997
Q ss_pred cchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhH
Q 009479 413 ISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQW 491 (533)
Q Consensus 413 ~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~-gvs~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~ 491 (533)
..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+||++|++++ +|++|
T Consensus 665 ~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~ 743 (785)
T 3s9v_A 665 DRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIY 743 (785)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHH
T ss_pred cccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHH
Confidence 6669999999999999999999999999999999999999999 999999999999999999999999999988 99999
Q ss_pred HHHHHHHhhhhchhcccCCCCCCCCh-hHHHHHHhhhcccCC
Q 009479 492 LLPSLNLARMMVVLYQNGDGYTNSTG-KTKDRIASLLVDPLP 532 (533)
Q Consensus 492 ~~~~lN~aR~~~~~Y~~~D~~t~~~~-~~k~~i~~ll~~pi~ 532 (533)
+++++|+||++++||+++||||.|+. .||++|++||++||.
T Consensus 744 ~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 744 KRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999999965 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=5.1e-107 Score=904.54 Aligned_cols=453 Identities=24% Similarity=0.342 Sum_probs=390.7
Q ss_pred HHHHHHHHHHHHHHhh-----ccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchH
Q 009479 16 KRFETLKAEIEKLLVS-----NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLY 89 (533)
Q Consensus 16 ~~~~~lk~~v~~~l~~-----~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~-~~~~~~~~~~~~~dl~ 89 (533)
+-.+-|+..|++...+ .. |++++|++||+||||||+|||++||+++|+++|++| ++|++++......||+
T Consensus 221 ~~l~YL~~~v~k~~g~VP~~yP~----d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~ 296 (727)
T 3pya_A 221 NCLEYLRNAVKRFNGGVPNVFPV----DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDID 296 (727)
T ss_dssp HHHHHHHHHHHHTTTCCCSSCCC----HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCC----cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHH
Confidence 3445588888776532 24 899999999999999999999999999999999999 6665443211146999
Q ss_pred HHHHHHHHhhhcCcceehhhhhcccccccccccc---cccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhh--
Q 009479 90 IVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS-- 164 (533)
Q Consensus 90 ~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~---l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~-- 164 (533)
+|||+|||||||||+||||||++|+ ++|+|++. +.+|++||||||||||+++|||+|||||++||++||++.+.
T Consensus 297 ~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~ 375 (727)
T 3pya_A 297 DTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRERE 375 (727)
T ss_dssp HHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 88999953 46899999999999999999999999999999999999875
Q ss_pred c------CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCcc-------------ccHHHHHHHHhhhHHHHHhhH
Q 009479 165 H------LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQALHR 225 (533)
Q Consensus 165 ~------~~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~-------------~n~~lLelAkldFn~~Q~~hq 225 (533)
. ++++|+++|+|||++|||+++||+|||+||++|+++ ++ +|++||||||||||+||++||
T Consensus 376 ~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq 454 (727)
T 3pya_A 376 ELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQ 454 (727)
T ss_dssp CCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHhH
Confidence 2 257899999999999999999999999999999976 54 699999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHH
Q 009479 226 IELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE 305 (533)
Q Consensus 226 ~El~~lsrWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~ 305 (533)
+||++++|||+++|| .++||||||++|||||++|++|||+||.+|+++||.+++++++||+||+|| ||++.||+||+
T Consensus 455 ~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~ 531 (727)
T 3pya_A 455 LEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFH 531 (727)
T ss_dssp HHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHH
T ss_pred HHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHH
Confidence 999999999999999 579999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhh---------hhcc---CChh--HHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCC
Q 009479 306 RWEVV---------AANE---LPKY--MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK 370 (533)
Q Consensus 306 rWd~~---------~~~~---lPe~--mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g 370 (533)
|||.+ +.+. +|+| ||+||.+|++++++++.++.+ +|. ++.++++++|.++++++++||+ +
T Consensus 532 rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~-~v~~~l~~~W~~~l~s~~~Ea~-~--- 606 (727)
T 3pya_A 532 EYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGR-DVNNLLYLSWGDWMEKWKLYGD-E--- 606 (727)
T ss_dssp HHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHSS-C---
T ss_pred hcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHhcc-c---
Confidence 99974 3222 3877 999999999999999998888 555 6999999999999999999987 2
Q ss_pred CCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHH
Q 009479 371 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVEC 450 (533)
Q Consensus 371 ~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~c 450 (533)
+| |. +++..+.+..|.. +++ ++.+ +.+..|.++++.||||+||+.+|++|+
T Consensus 607 -----~E---------Ae-llv~~I~l~sG~~-l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~----------- 657 (727)
T 3pya_A 607 -----GE---------GE-LMVKMIILMKNND-LTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE----------- 657 (727)
T ss_dssp -----CH---------HH-HHHHHHHHHSSSC-GGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------
T ss_pred -----cc---------ee-eeeeeeecCCCcc-hHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------
Confidence 33 22 4444555555877 888 6655 566669999999999999999999977
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhc
Q 009479 451 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPN--HPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLV 528 (533)
Q Consensus 451 yMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~ 528 (533)
.+++.+.|+..|+++++.+++++ .+|++| |+.+|++.||.. ||++|+ |..+|.++|+
T Consensus 658 ------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl~ 716 (727)
T 3pya_A 658 ------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVLF 716 (727)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHHc
Confidence 55889999999999999999854 799999 999999999986 999995 9999999999
Q ss_pred ccCC
Q 009479 529 DPLP 532 (533)
Q Consensus 529 ~pi~ 532 (533)
+||-
T Consensus 717 ~~~~ 720 (727)
T 3pya_A 717 QKVG 720 (727)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 9973
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=5.1e-51 Score=422.18 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=227.9
Q ss_pred HHhhHHHHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHHHHHHHHhhhhhhcccc--CCHHH
Q 009479 221 QALHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY--GTLEE 296 (533)
Q Consensus 221 Q~~hq~El~~ls-rWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl-~~ak~~~l~~viDD~fD~~--gt~eE 296 (533)
+..|.+|+++.+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 455777887777 6999999965 59999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCC-Ch
Q 009479 297 LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVP-TF 375 (533)
Q Consensus 297 l~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vP-s~ 375 (533)
++.|++++.+|+.+ .+|+++++++.++.+++++++..+.+ ....++++.|++|++++++||+|+.+|++| |+
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 99999999999864 47999999999999999999765433 468999999999999999999999999999 99
Q ss_pred HHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhc
Q 009479 376 EECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY 455 (533)
Q Consensus 376 eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~ 455 (533)
+||+++|++|+|++++++++++++|.. +|+++++. +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++
T Consensus 167 eEYl~~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999 99998876 5666899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 009479 456 GVSEEEACNKIKGMVEIEWMNINEEI 481 (533)
Q Consensus 456 gvs~eeA~~~i~~~i~~~wk~ln~e~ 481 (533)
|+|+|+|++++.++++++||++|+..
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.5e-48 Score=396.89 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=222.2
Q ss_pred hhHHHHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHHHHHHHHhhhhhhccccCCHHHHHHH
Q 009479 223 LHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLF 300 (533)
Q Consensus 223 ~hq~El~~ls-rWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl-~~ak~~~l~~viDD~fD~~gt~eEl~~f 300 (533)
-|.+|+++.+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 4678888877 588999996 579999999999999999888999999999 999999999999999999 789999999
Q ss_pred HHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHh
Q 009479 301 THAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVE 380 (533)
Q Consensus 301 t~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~ 380 (533)
++++.+|+.+ +.+|++++++++++++++++++..++ .+.++.|+.++++++ |++|+.+|++||++|||+
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999985 47899999999999999999986641 345667999999997 899999999999999999
Q ss_pred hhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CCchHHHHH
Q 009479 381 NSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVECYV 452 (533)
Q Consensus 381 ~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~cyM 452 (533)
+|++|+|++++++++++++|.. +|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLR-LSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 9999999999999999999999 9999998 459999999999999999999999999999 779999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 009479 453 QQYGVSEEEACNKIKGMVEIEWMNINEEI 481 (533)
Q Consensus 453 ke~gvs~eeA~~~i~~~i~~~wk~ln~e~ 481 (533)
+++|+|+|+|+++++++++++||++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=4.9e-47 Score=389.66 Aligned_cols=244 Identities=16% Similarity=0.115 Sum_probs=219.5
Q ss_pred HHhhHHHHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHHHHHHHHhhhhhhccccCCHHHHH
Q 009479 221 QALHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEELK 298 (533)
Q Consensus 221 Q~~hq~El~~ls-rWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl-~~ak~~~l~~viDD~fD~~gt~eEl~ 298 (533)
...|.+|+++.+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~ 102 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGS 102 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHH
Confidence 345777888887 58899999755 9999999999999998888999999999 999999999999999999 8899999
Q ss_pred HHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHH
Q 009479 299 LFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 378 (533)
Q Consensus 299 ~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEY 378 (533)
.|++++.+|+.+ +.+|+++++++.++++++++++..+ + .+.++.|+.++ ++++|++|+.+|++||++||
T Consensus 103 ~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeY 171 (320)
T 3bny_A 103 AYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGY 171 (320)
T ss_dssp HHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHH
T ss_pred HHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHH
Confidence 999999999975 4679999999999999999998654 1 23445566677 59999999999999999999
Q ss_pred HhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CCchHHH
Q 009479 379 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVEC 450 (533)
Q Consensus 379 l~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~c 450 (533)
+++|++|+|++++++++++++|.. +|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|
T Consensus 172 l~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~ 247 (320)
T 3bny_A 172 LEYRERDVGKELLAALMRFSMGLK-LSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQI 247 (320)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHH
Confidence 999999999999999999999999 9999998 469999999999999999999999999998 7899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 009479 451 YVQQYGVSEEEACNKIKGMVEIEWMNINEEI 481 (533)
Q Consensus 451 yMke~gvs~eeA~~~i~~~i~~~wk~ln~e~ 481 (533)
||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 248 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 248 LAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999855
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=7.8e-46 Score=390.68 Aligned_cols=243 Identities=11% Similarity=-0.034 Sum_probs=223.0
Q ss_pred HHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHHHHHHHHhhhhhhccc--cC-CHHHHHHHHHHHHh
Q 009479 231 ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDV--YG-TLEELKLFTHAIER 306 (533)
Q Consensus 231 lsrWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl-~~ak~~~l~~viDD~fD~--~g-t~eEl~~ft~av~r 306 (533)
+.+||+++|+.. .+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.+++++.+
T Consensus 66 ~~~W~~~~gl~~-~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLMP-ADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSSC-HHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 457999999953 47899999999999999999999999999 999999999999999996 66 99999999999988
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhcccc
Q 009479 307 WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSS 386 (533)
Q Consensus 307 Wd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ss 386 (533)
+-.. ...+|++++++++++.+++++++..+.+ ....+++++|+++++++++||+|+.+|++||++|||++|++|+
T Consensus 145 ~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HhcC-CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 5222 2235889999999999999999755433 3589999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHH
Q 009479 387 GYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKI 466 (533)
Q Consensus 387 g~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i 466 (533)
|+.++++++++++|.. +|++++++ +..++|++++++++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++
T Consensus 220 g~~~~~~l~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v 297 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEV 297 (382)
T ss_dssp THHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999 99999988 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009479 467 KGMVEIEWMNINEEI 481 (533)
Q Consensus 467 ~~~i~~~wk~ln~e~ 481 (533)
+++++++||+||+..
T Consensus 298 ~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 298 RRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=1.8e-33 Score=299.80 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=190.4
Q ss_pred HHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCc-chhhH-HHHHHHHHHhhhhhh-ccccC-CHHHH-HHH
Q 009479 227 ELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKY-STTRK-FMTKIIAIASVIDDI-YDVYG-TLEEL-KLF 300 (533)
Q Consensus 227 El~~ls-rWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~-s~~Rl-~~ak~~~l~~viDD~-fD~~g-t~eEl-~~f 300 (533)
|++.-. .|..++++... +-.|+++..+.|..++++..|.. +..|+ +++||++|+|++||. +|..| +.+.+ ..+
T Consensus 130 ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l 208 (433)
T 3v1v_A 130 EVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRL 208 (433)
T ss_dssp HHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHH
Confidence 555444 69999876433 34688888888855555555999 79999 999999999999999 59755 33221 122
Q ss_pred HH---HHHhhh----hhh--hccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 009479 301 TH---AIERWE----VVA--ANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKY 371 (533)
Q Consensus 301 t~---av~rWd----~~~--~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~ 371 (533)
.. ++.... ... ....+ -.++..+++++++++.+.+.+ ....++++.|++|+++|++||+|+.+|+
T Consensus 209 ~~a~~~~d~l~~~~~g~p~~~~~~~--~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 209 LLAHTAIDHFHSTAEYTPTWQASLA--ADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHTTTSCCCCCTTTHHHHHHHTT--SSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhcccCCCCccccccC--CchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22 111110 000 00001 124578999999999877555 4689999999999999999999999999
Q ss_pred CCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcC-CCCchHHH
Q 009479 372 VPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVEC 450 (533)
Q Consensus 372 vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G-~~~n~V~c 450 (533)
+||++|||++|+.| |+.++++++.+++|.. +|++++++ +...+|++++++++||+|||+||+||+++| +++|+|.|
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~ 359 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYE-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVV 359 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCC-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHH
Confidence 99999999999999 7777777788999999 99999887 566789999999999999999999999995 78899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 009479 451 YVQQYGVSEEEACNKIKGMVEIEWMNINEEI 481 (533)
Q Consensus 451 yMke~gvs~eeA~~~i~~~i~~~wk~ln~e~ 481 (533)
||+++|+|+|+|++++.++++++++++.+..
T Consensus 360 ~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 360 IAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887653
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.79 E-value=8.5e-19 Score=183.29 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=169.1
Q ss_pred HHHHHHHHhC------------CCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHHHHHHHHhhhhhhccccCCHHH
Q 009479 230 EISRWWKDID------------FATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEE 296 (533)
Q Consensus 230 ~lsrWw~~~~------------l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl-~~ak~~~l~~viDD~fD~~gt~eE 296 (533)
+..+|..+.| +. .-|-..++++.+-.|.++..| |..+...+ .++++.+|+|++||++|..+ ++
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 4447888888 53 234466777888888666665 99999988 89999999999999999654 66
Q ss_pred HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChH
Q 009479 297 LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFE 376 (533)
Q Consensus 297 l~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~e 376 (533)
+..|.+.+.+ ... |+ .++..++.+.+.++.+.+ ++ .+..++.++|.+++.++.+|+.. .+..|+.+
T Consensus 110 l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~~~~---~p-~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~ 175 (374)
T 1yyq_A 110 MVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVLRHF---GP-FCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSH 175 (374)
T ss_dssp HTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHHTTS---CH-HHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCT
T ss_pred HHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHHHhc---CH-HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHH
Confidence 6667666543 211 11 255667777776665443 33 67899999999999999999873 67789999
Q ss_pred HHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhh-cCCCCchHHHHHHhc
Q 009479 377 ECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQE-RGDAPSSVECYVQQY 455 (533)
Q Consensus 377 EYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~-~G~~~n~V~cyMke~ 455 (533)
+|...++.++|+.-.... +.++.. +.++.. ..+....++.....++.|+|||.||.||.. .|+.+|+|.+++.++
T Consensus 176 ~Y~~~rR~~sG~~E~~~~--~~~P~~-~~~e~~-~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~ 251 (374)
T 1yyq_A 176 DYPQFLRRMNGLGHCVGA--SLWPKE-QFNERS-LFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSD 251 (374)
T ss_dssp THHHHHHHHHHCHHHHHH--TTCCTT-TCCTTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHH--hhcccc-ccchhh-cchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcC
Confidence 999998888887543332 222222 221111 112234567777779999999999999998 499999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 456 GVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 456 gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
|+|.++|++++..++..+..++-.
T Consensus 252 g~S~~eAl~~v~~~~~~~~~r~~~ 275 (374)
T 1yyq_A 252 EISLHEALEKLTQDTLHSSKQMVA 275 (374)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888855
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=89.43 E-value=17 Score=35.71 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHh-hhhhhh--ccCChhHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 009479 269 TTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER-WEVVAA--NELPKYMQVCYFALLDVVKEMEDKLVNKEPLCC 345 (533)
Q Consensus 269 ~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~r-Wd~~~~--~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~ 345 (533)
..|-.+.-+-.|.-.+||+=|....+.+++.+-+.+.. .+.... ...|+ .++..++.+++.+.. -+
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~------l~--- 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKN------IA--- 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSC------CC---
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhC------CC---
Confidence 34555556777777889999976655445555555543 111110 00022 367777777665431 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHH
Q 009479 346 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 425 (533)
Q Consensus 346 ~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i 425 (533)
++.+.+++.++-. +......+|++|+......+.|+-..+.+-.+|. . -.++..+ .....+..
T Consensus 107 ----~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~--~-~~~~~~~-------~A~~lG~A 169 (293)
T 3acx_A 107 ----FQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSD--H-ETHQTYD-------VARRLGES 169 (293)
T ss_dssp ----HHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCS--S-CCHHHHH-------HHHHHHHH
T ss_pred ----HHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCC--C-CcHHHHH-------HHHHHHHH
Confidence 2344566666643 3334567899999998888887666655545533 2 1122222 22223333
Q ss_pred HHHhcCccchhhhhhcCCC--CchHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 009479 426 ARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWL 492 (533)
Q Consensus 426 ~RL~NDi~S~~~E~~~G~~--~n~V~cyMke~gvs~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 492 (533)
.-|.|=|........+|-+ +. =.|.++|+|.++- .+-+..++..+..-+.+..--...+|....
T Consensus 170 lQltNilRDv~eD~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 170 LQLINILRDVGEDFENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp HHHHHHHHCHHHHHHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred HHHHHHHHHHHHHHhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 3333323333344556654 32 2467789998762 234556666666555443222234665443
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=89.10 E-value=1.9 Score=43.14 Aligned_cols=142 Identities=6% Similarity=-0.050 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
....+.++...++.+-..+..|... .||.++|+..-..-+|.....++ ..| ++. .+++..+.+ ..+-+..
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~lag--~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTGG--AEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4556667777788888888888643 48999999887665555433222 222 122 355544333 5677778
Q ss_pred HHHHHHhcCccchhhhh-----hcCCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hHHHH
Q 009479 423 SLIARLDDDVHTYKVEQ-----ERGDAPSSVECYVQQYGV--SEEEACNKIKGMVEIEWMNINEEIQDPNHPPL-QWLLP 494 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~E~-----~~G~~~n~V~cyMke~gv--s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~ 494 (533)
....-+.||+..+.... ..|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +-++.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHH
Confidence 88889999998885433 2233 2666666654321 1555666666666666655543 553 44555
Q ss_pred HHHHhhhh
Q 009479 495 SLNLARMM 502 (533)
Q Consensus 495 ~lN~aR~~ 502 (533)
..++++.+
T Consensus 272 L~~l~~~~ 279 (295)
T 3ipi_A 272 LFQITDYI 279 (295)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 56666543
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=87.97 E-value=3.6 Score=42.28 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh-cCCCcCcHHHHHhhcchhHHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 423 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~-~g~~~lp~e~~e~~~~~p~l~~~~~ 423 (533)
....+.+++..++.+-..+..|.... ||.++|+..-..-+|.....++-.-+ ++. .+++..+.+ ..+-....
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~lG 233 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 56778888899999999999997655 99999999876655555433322211 122 355544333 56777888
Q ss_pred HHHHHhcCccchhhh-----------hhcCCCCchHHHHHHhc
Q 009479 424 LIARLDDDVHTYKVE-----------QERGDAPSSVECYVQQY 455 (533)
Q Consensus 424 ~i~RL~NDi~S~~~E-----------~~~G~~~n~V~cyMke~ 455 (533)
...-+.||+..+.-+ ...|.. +...+|.-++
T Consensus 234 ~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 234 MIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 888899999887532 223433 6666665444
No 20
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=84.64 E-value=32 Score=33.82 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHhhhhhhccccC-C-HHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 009479 271 RKFMTKIIAIASVIDDIYDVYG-T-LEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYY 348 (533)
Q Consensus 271 Rl~~ak~~~l~~viDD~fD~~g-t-~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~ 348 (533)
|-.+.-+-.|.=.+||+-|... . ...|+.+-+.+.+.-. .-|. .+++.++.+++.+.. -+ .
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~----g~~~--~pv~~al~~~~~~~~------l~---~-- 103 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFA----GEAT--TPAFRALQFTIATCN------LP---M-- 103 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHH----TCCC--SHHHHHHHHHHHHHT------CC---S--
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHcC------CC---H--
Confidence 3333455566677899999643 2 2334444444433111 1132 267788887766542 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHH
Q 009479 349 AKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARL 428 (533)
Q Consensus 349 ~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL 428 (533)
+.+.+++.++..... ....+|++|+......+.|+--.+.+-.+ |.. +++.... ....+...-|
T Consensus 104 --~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~--~~~~~~~-------A~~lG~AlQl 167 (294)
T 4hd1_A 104 --EPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL--DDERARL-------SDATCTALQV 167 (294)
T ss_dssp --HHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC--SHHHHHH-------HHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC--CHHHHHH-------HHHHHHHHHH
Confidence 234556666654332 34568998888887777766554444444 332 2332222 2222333334
Q ss_pred hcCccchhhhhhcCCC--CchHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 009479 429 DDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWL 492 (533)
Q Consensus 429 ~NDi~S~~~E~~~G~~--~n~V~cyMke~gvs~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 492 (533)
.|=+.......++|-+ +. -.|.++|+|.++- ..-+..+++.+-.-+.+..--...+|..+.
T Consensus 168 tNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 168 ANHMQDIDRDLALGRIYVPR---ADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred HHHHHhchhhhccCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4433333444566653 32 3577899998762 223344444444333332221234776544
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=81.95 E-value=15 Score=37.41 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 421 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~ 421 (533)
.....+.++...++.+-..+..|.. +..||.++|+..-..-+|.....++ ..| ++. .+++..+.+ ..+-+.
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~l---~~~g~~ 223 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAG--VDVAKSEAL---RDYGLN 223 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHH
Confidence 4567788888889999998888853 3458999999987766665433322 222 122 455544333 567778
Q ss_pred HHHHHHHhcCccchhh
Q 009479 422 SSLIARLDDDVHTYKV 437 (533)
Q Consensus 422 ~~~i~RL~NDi~S~~~ 437 (533)
.....-+.||+..+.-
T Consensus 224 lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 224 LGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999988754
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=81.76 E-value=21 Score=36.21 Aligned_cols=87 Identities=10% Similarity=-0.000 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 421 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~ 421 (533)
.....+.++...++.+-..+..|.. +..||.++|+..-..-+|.....++ ..| ++. .+++..+.+ ..+-..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~l---~~~g~~ 211 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAAT-EVGGIIGG--APEDQVQAL---FDYGDA 211 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHH
Confidence 4567778888889999999988864 4468999999986665555433222 222 122 355544333 567778
Q ss_pred HHHHHHHhcCccchhh
Q 009479 422 SSLIARLDDDVHTYKV 437 (533)
Q Consensus 422 ~~~i~RL~NDi~S~~~ 437 (533)
.....-+.||+..+.-
T Consensus 212 lG~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 212 LGIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888889999887753
No 23
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=81.12 E-value=12 Score=37.80 Aligned_cols=88 Identities=7% Similarity=0.008 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh-cCCCcCcHHHHHhhcchhHHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~-~g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
.....+.++...++.|-..+..|.. ...||.++|+..-..-+|.....++-.-+ ++. .+++..+. ...+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4577788888999999999988854 34589999999877666655433322111 122 35554433 35677788
Q ss_pred HHHHHHhcCccchhh
Q 009479 423 SLIARLDDDVHTYKV 437 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~ 437 (533)
....-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 888899999988863
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=80.64 E-value=7.9 Score=38.61 Aligned_cols=111 Identities=9% Similarity=0.076 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|... .+|.++|+..-..-+|.....++ ..| ++ . .+++..+.+ .++-.......-+.||
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~la-g-~~~~~~~~l---~~~g~~lG~aFQI~DD 219 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAV-MSAADIA-N-VDDTTKEHL---ESYSYHLGMMFQIKDD 219 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHH-T-CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHHHHc-C-CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5567777777777543 78999999997765555433322 222 11 1 355544433 5677788888899999
Q ss_pred ccchhhhh-----------hcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E~-----------~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+. ..|.. +.+.++- .+.|.+.+.+.++++.+.+..
T Consensus 220 ilD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 220 LLDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 12222 5554443 578888999999988877765
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=78.64 E-value=18 Score=36.48 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.|-..+..|.. ..||.++|+..-..-+|.....+ ...| ++.. .+++..+.+ ..+-+......-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~l---~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRAS-VRLACLARPG-LPAEQFDRL---DHYAKCIGLAFQIQDD 230 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTT-CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCC-CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 356777777777754 37899999998554444433222 2332 2332 355544333 5677778888889999
Q ss_pred ccchhhh-----------hhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E-----------~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+ ...|.. +.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 282 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLAG 282 (324)
T ss_dssp HHHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9887542 122322 555554 4789999999999988876653
No 26
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=78.31 E-value=21 Score=35.20 Aligned_cols=120 Identities=10% Similarity=-0.011 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
....+.++...++.+-..+..|......||.++|+..-..-+|.....++ ..| ++. .+++ ...++-...
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~-~~ga~lag--~~~~------~l~~~g~~l 205 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCF-SAPFILXG--XDHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT--CCCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhC--CChh------HHHHHHHHH
Confidence 45667777788899999899997654478999999987665555433222 221 111 2322 125577778
Q ss_pred HHHHHHhcCccchhhhh-hcCC-----C--CchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 423 SLIARLDDDVHTYKVEQ-ERGD-----A--PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~E~-~~G~-----~--~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
....-+.||+..+.-+. ..|. . .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999886542 2333 1 2333333 3688999999999999988876
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=77.59 E-value=12 Score=37.25 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 009479 355 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 432 (533)
Q Consensus 355 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi 432 (533)
.++.+-..+..|. +..||.++|...-..-+|.....+ ...| ++. .+++..+.+ ..+-.......-+.||+
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFA-LIAGGVLAN--QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566767677774 347899999998544334333222 2222 122 455544333 56777788888899999
Q ss_pred cchhhh-----------hhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 433 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 433 ~S~~~E-----------~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
..+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887432 222222 444444 4789999999999999988775
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=77.52 E-value=12 Score=37.12 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|...+..||.++|+..-..-+|.....++ ..| ++. .+++ ....+-.......-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~-~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAA-QAGAILAG--ADRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHH-HHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHH
Confidence 45777878888887657789999999986554444332221 222 111 2333 124567778888899999
Q ss_pred ccchhhhh-hcCC-----C----CchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVEQ-ERGD-----A----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E~-~~G~-----~----~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+. ..|. . .+.+.++ ..+.|.+.+.+.++++.+.++.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp CC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99885432 1221 1 1444444 3477888899999988877764
No 29
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=77.30 E-value=19 Score=36.43 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh-cCCCcCcHHHHHhhcchhHHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 423 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~-~g~~~lp~e~~e~~~~~p~l~~~~~ 423 (533)
....+.++...++.+-..+..|.... ..|.++|+..-..-+|.....++..-+ ++. .+++..+.+ ..+-....
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 45667777788999999999996533 459999999877655554433322211 111 355544333 56778888
Q ss_pred HHHHHhcCccchhh
Q 009479 424 LIARLDDDVHTYKV 437 (533)
Q Consensus 424 ~i~RL~NDi~S~~~ 437 (533)
...-+.||+..+.-
T Consensus 212 ~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 212 IAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88899999988753
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=76.99 E-value=15 Score=37.18 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|... .+|.++|+..-..-+|.....++ ..| ++. .+++..+.+ .++-.......-+.||
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~-~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFAC-EAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADD 263 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4567777777788654 78999999987765555433222 222 111 355544433 5677788888899999
Q ss_pred ccchhhhh-----------hcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E~-----------~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+. ..|.. +.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 264 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 264 LLDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 12222 555444 2688999999999999887765
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=76.93 E-value=17 Score=36.20 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcC-cHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 009479 356 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAI-TKRALDWAISVPKIIRSSSLIARLDDDV 432 (533)
Q Consensus 356 ~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~l-p~e~~e~~~~~p~l~~~~~~i~RL~NDi 432 (533)
++.+-..+..|.. ..||.++|+..-..-+|.....+ ...| ++. . +++..+.+ ..+-.......-+.||+
T Consensus 154 ~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag--~~~~~~~~~l---~~~g~~lGlaFQI~DDi 225 (304)
T 3lsn_A 154 MVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEAS-VILGALASG--RAEKGELKAL---QTYAQAIGLAFQVQDDI 225 (304)
T ss_dssp HHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC--CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6677777777754 35899999998554444333322 2222 122 3 55544433 56777888888999999
Q ss_pred cchhhhh-hcCC-----C----CchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhh
Q 009479 433 HTYKVEQ-ERGD-----A----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLAR 500 (533)
Q Consensus 433 ~S~~~E~-~~G~-----~----~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR 500 (533)
..+.-+. ..|. . .+.+.+| ..+.|.+.+.+.++++.+.++. +|.. ......++.
T Consensus 226 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~-------l~~~-~~~L~~l~~ 289 (304)
T 3lsn_A 226 LDVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALRP-------FDAA-AEPLRELAR 289 (304)
T ss_dssp HHHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTTT-------SCGG-GHHHHHHHH
T ss_pred HhccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh-------Cchh-HHHHHHHHH
Confidence 8885432 2222 1 2555444 4688999999999988877654 5542 444445544
No 32
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=74.18 E-value=12 Score=37.26 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|. +..||.++|+..-..-+|.....+ ...| ++.. .+++..+ ...++-.......-+.||
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~-~~~~~~~---~l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGE-KGRAMLP---HLDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHTTHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCC-CCHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777788885 457899999998654444433222 2222 1221 2333222 235577778888889999
Q ss_pred ccchhhhh-----------hcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E~-----------~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 22222 555554 3688899999999988887764
No 33
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=74.17 E-value=36 Score=34.27 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhc--CCCcCcHHHHHhhcchhHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~--g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
....+.+....++.+-+.+..|.. +..||.++|+..-..-+|.....+ +..|. +. .+++..+.+ ..+-...
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~l---~~~g~~l 216 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG--APQSVIDRT---RDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 456677788888888888877753 456899999988665555543322 22221 22 455544333 5566777
Q ss_pred HHHHHHhcCccchhh-----------hhhcCCCCchHHHHHHh
Q 009479 423 SLIARLDDDVHTYKV-----------EQERGDAPSSVECYVQQ 454 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~-----------E~~~G~~~n~V~cyMke 454 (533)
....-+.||+..+.- +...|.. +...+|.-+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 778888888877643 2344554 666566544
No 34
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=70.74 E-value=26 Score=35.16 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 009479 355 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 432 (533)
Q Consensus 355 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi 432 (533)
.++.|-..+..|. +..||.++|+..-..-+|.....+ ...| ++.. .+++..+.+ ..+-+......-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~l---~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQ-VKPEQLAKL---DAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4667777777775 445999999998654444433222 2222 2332 355544333 56777888888999999
Q ss_pred cchhhh-----------hhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 433 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 433 ~S~~~E-----------~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
..+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887533 122322 555555 3688999999999999887765
No 35
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=70.73 E-value=32 Score=35.02 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCChHHHHhhhccccchhhHHHHHHHhc--CCCcCcHHHHHh
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFH----------AKY-VPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDW 411 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~----------~g~-vPs~eEYl~~~~~Ssg~~~~~~~~~~~~--g~~~lp~e~~e~ 411 (533)
....+.++...++.|-..+..|.. .+. .||.++|+..-..-+|.....++ ..|. +. .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~ 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVS--DDRGLAEA 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHH
Confidence 466778888899999999999862 233 67999999987665555533322 2221 11 35554433
Q ss_pred hcchhHHHHHHHHHHHHhcCccchh
Q 009479 412 AISVPKIIRSSSLIARLDDDVHTYK 436 (533)
Q Consensus 412 ~~~~p~l~~~~~~i~RL~NDi~S~~ 436 (533)
+ ..+-.......-+.||+..+.
T Consensus 210 l---~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 A---WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHhc
Confidence 3 567778888888899988774
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=68.10 E-value=30 Score=34.99 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh-cCCCcCcHHHHHhhcchhHHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~-~g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
.+...+.++...++.+-..+..|.. +..||.++|+..-..-+|.....++..-+ ++. .+++..+.+ ..+-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 3566777788888888888877643 23579999999866544444333221111 222 455544333 5567778
Q ss_pred HHHHHHhcCccchhh
Q 009479 423 SLIARLDDDVHTYKV 437 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~ 437 (533)
....-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 888899999988754
No 37
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=64.60 E-value=53 Score=32.43 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhc
Q 009479 353 IKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 430 (533)
Q Consensus 353 ~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~N 430 (533)
....+.+-..+..|. +..||.++|...-..-+|.....++ ..| ++. .+++..+. ...+-+......-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEICE--LNNEESNQ---IYKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 445666666666764 3578999999986544444333222 222 122 45554433 3567778888889999
Q ss_pred Cccchhhh-hhcCCCC-------chHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 431 DVHTYKVE-QERGDAP-------SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 431 Di~S~~~E-~~~G~~~-------n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
|+..+.-+ ...|... +.+.++ ..+.|.++.+++++++.+.++.
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 99887643 2333321 333332 3678888888888888877764
No 38
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=61.63 E-value=88 Score=31.22 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhCCCCCChHHHHhhhccccchh-hHHHHHH--HhcCCCcCcHHHHHhhcchhHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKW-FHAKYVPTFEECVENSTMSSGYP-MLAVEAL--VGLEDMAITKRALDWAISVPKIIR 420 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW-~~~g~vPs~eEYl~~~~~Ssg~~-~~~~~~~--~~~g~~~lp~e~~e~~~~~p~l~~ 420 (533)
....+.++...++.+-..+..| ......||.++|+..-..-+|.. ...++.. ...|. +++.. ...+-.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~---~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK---TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC---CHHHH-----HHHHHH
Confidence 4666778888999999999999 65435689999999877655544 3322211 12232 22222 256777
Q ss_pred HHHHHHHHhcCccchh
Q 009479 421 SSSLIARLDDDVHTYK 436 (533)
Q Consensus 421 ~~~~i~RL~NDi~S~~ 436 (533)
......-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7888888899988875
No 39
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=60.15 E-value=62 Score=32.26 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhc-cccchhhHHHHHHHhc-CCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~Ssg~~~~~~~~~~~~-g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|... ..||.++|...-. .|++...+.+.+ ..+ |.. .+++..+.+ ..+-.......-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~-a~~~~~~~l---~~~g~~lGlaFQI~DD 231 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHE-VSEQIKSAL---RTYGKHIGLVFQMQDD 231 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSS-CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCC-CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3566777777777532 3789999999865 454432222222 222 321 245444333 5677788888899999
Q ss_pred ccchhhhh-----------hcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E~-----------~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.+..
T Consensus 232 ilD~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 283 (313)
T 3lom_A 232 YLDLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLRL 283 (313)
T ss_dssp HHHHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 22222 444333 4789999999999988876653
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=59.10 E-value=43 Score=33.67 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|... ..||.++|...-..-+|.....+ ...| ++. .+++..+.+ ..+-.......-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLAE--ASEGDIKKL---EGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3567777777777532 36899999998544334333222 2222 122 455544333 5677778888899999
Q ss_pred ccchhhh-----------hhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E-----------~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9887432 122222 444443 4689999999999999888765
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=58.50 E-value=15 Score=36.30 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhCC-CCCChHHHHhhhc-cccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhc
Q 009479 355 GLVKAYFVEAKWFHAK-YVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 430 (533)
Q Consensus 355 ~~~~a~l~EAkW~~~g-~vPs~eEYl~~~~-~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~N 430 (533)
.++.+-..+..|...+ ..+|.++|+..-. .|++. ...+ ...| ++. .+++..+.+ ..+-.......-+.|
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L-~~~a-~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~D 233 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEAS-AVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVD 233 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHH-HHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4566666666664321 3468899998854 45443 2222 2222 122 455544433 567778888889999
Q ss_pred CccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 431 DVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 431 Di~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
|+..+..+. -.+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 234 DiLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 234 DILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999886443 23555444 4678888888888888877654
No 42
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=57.76 E-value=53 Score=32.41 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcC--CCcCcHHHHHhhcchhHHHHHHHHHHHHhcC
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLE--DMAITKRALDWAISVPKIIRSSSLIARLDDD 431 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g--~~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 431 (533)
..++.+-..+..|... .+|.++|+..-..-+|.....+ ...|.- -. .+++..+. ..++-.......-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 7899999999765554443322 222211 12 34444433 35677788888899999
Q ss_pred ccchhhhh-hcCCC---------CchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 432 VHTYKVEQ-ERGDA---------PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 432 i~S~~~E~-~~G~~---------~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
+..+.-+. ..|.. .+...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 22321 24544442 477888999999999888766
No 43
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=57.15 E-value=47 Score=33.14 Aligned_cols=110 Identities=8% Similarity=-0.011 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 009479 355 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 432 (533)
Q Consensus 355 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi 432 (533)
.++.+-..+..|. +..||.++|...-..-+|.....++ ..| ++. .+++..+. ...+-.......-+.||+
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566666666774 4468999999985444444332222 222 122 34443322 256777788888899999
Q ss_pred cchhhh-----------hhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 009479 433 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 433 ~S~~~E-----------~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~ 479 (533)
..+.-+ ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 887432 222222 454444 3578888999999988887764
No 44
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=56.78 E-value=52 Score=33.34 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhc-CCCcCcHHHHHhhcchhHHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSS 423 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~-g~~~lp~e~~e~~~~~p~l~~~~~ 423 (533)
....+.++...++.+-..+..|... ..||.++|+.+-..-+|.....++ ..|. --. .+++..+.+ ..+-+...
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGG-ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 4566777888899999989898643 368999999987665555543332 2221 012 455554433 56778888
Q ss_pred HHHHHhcCccchh
Q 009479 424 LIARLDDDVHTYK 436 (533)
Q Consensus 424 ~i~RL~NDi~S~~ 436 (533)
...-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8889999998774
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=53.79 E-value=32 Score=34.40 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhc--CCCcCcHHHH-HhhcchhHHHHHHHHHHHHhc
Q 009479 354 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRAL-DWAISVPKIIRSSSLIARLDD 430 (533)
Q Consensus 354 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~--g~~~lp~e~~-e~~~~~p~l~~~~~~i~RL~N 430 (533)
..++.+-..+..|. +..||.++|+..-..-+|.....++ ..|. +. .+++.. +.+ ..+-+......-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45666766676775 5678999999885544444332222 2221 11 233333 333 567778888889999
Q ss_pred Cccchhhh-hhcCCCCchHHHHHHhcCC------CHHHHHHHHHHHHHHHHHHHHH
Q 009479 431 DVHTYKVE-QERGDAPSSVECYVQQYGV------SEEEACNKIKGMVEIEWMNINE 479 (533)
Q Consensus 431 Di~S~~~E-~~~G~~~n~V~cyMke~gv------s~eeA~~~i~~~i~~~wk~ln~ 479 (533)
|+..+.-+ ...|..... ++... ..+.|.+..+++++++.+.+..
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888643 333443211 22222 3688888899999988877754
No 46
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=53.17 E-value=11 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhccCCccChhhHHHHHHHHHHh
Q 009479 17 RFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRL 52 (533)
Q Consensus 17 ~~~~lk~~v~~~l~~~~~~~~d~~~~l~liD~lqrL 52 (533)
++.=|++|||..|..++ +.++++-++.+||-|
T Consensus 17 eIRwlIeE~Rh~Lk~Te----nsfeQItfmqalQLl 48 (58)
T 1pd3_A 17 EIRWLIEEVRHRLKITE----NSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHTCCCCT----TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHH
Confidence 34448888888887777 889999999998864
No 47
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=51.27 E-value=1.6e+02 Score=29.29 Aligned_cols=84 Identities=7% Similarity=-0.122 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 421 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~ 421 (533)
.....+.++...++.+-..+..|.. ...||.++|+..-..-+|.....++ ..| ++. .+.+ ....+-..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~------~l~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASL-KSMAILLN--KDAK------IYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--SCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHH-HHHHHHcC--CCHH------HHHHHHHH
Confidence 3566777888889999999999864 3468999999876655554433222 222 122 2311 22556777
Q ss_pred HHHHHHHhcCccchhh
Q 009479 422 SSLIARLDDDVHTYKV 437 (533)
Q Consensus 422 ~~~i~RL~NDi~S~~~ 437 (533)
.....-+.||+..+.-
T Consensus 192 lG~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 192 FGMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcccC
Confidence 8888888998887743
No 48
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=50.05 E-value=2e+02 Score=28.44 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 423 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~ 423 (533)
.....+.++...++.|-..+..|.. +..||.++|+..-..-+|.....++..-++--. .+++..+.+ ..+-....
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYHI---KQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 3567777888899999999988864 335899999998776555553333222211112 455544333 56777888
Q ss_pred HHHHHhcCccchhh
Q 009479 424 LIARLDDDVHTYKV 437 (533)
Q Consensus 424 ~i~RL~NDi~S~~~ 437 (533)
...-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88889999988753
No 49
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=39.97 E-value=3e+02 Score=27.50 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHhhhhhhccccC-CHHH----HHHHHHHHHh--hhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCC
Q 009479 270 TRKFMTKIIAIASVIDDIYDVYG-TLEE----LKLFTHAIER--WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEP 342 (533)
Q Consensus 270 ~Rl~~ak~~~l~~viDD~fD~~g-t~eE----l~~ft~av~r--Wd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~ 342 (533)
.|-.+.-+-.|.=..||+-|... +.++ |+.|-+.+.. |... +..|.. +.++..+-.+...+.. ++.
T Consensus 38 ~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~--~~~~~~-~~ll~~~p~v~~~f~~-l~~--- 110 (343)
T 3vj8_A 38 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFM--ESKEKD-RQVLEDFPTISLEFRN-LAE--- 110 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCC--CCCSTT-THHHHTHHHHHHHHHH-SCH---
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhc--CCChhh-HHHHhcCcHHHHHHHH-hHH---
Confidence 34445567777888999999764 4433 3333333321 2111 111221 2222211112222210 000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHH
Q 009479 343 LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
.......+....++.++.. +. ....+|++|+......+.|+-....+-.++.... -++. .+ .........
T Consensus 111 -~~~~~i~~~~~~m~~gm~~---dl-~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~-~~~~-~~---~~~~~A~~l 180 (343)
T 3vj8_A 111 -KYQTVIADICRRMGIGMAE---FL-DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF-EDPL-VG---EDTERANSM 180 (343)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---GG-GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS-SCHH-HH---HCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH---hc-cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCC-ccch-hh---hHHHHHHHH
Confidence 0111222333445555532 22 3567899999888888877766666555554321 1111 11 112344455
Q ss_pred HHHHHHhcCccchhhhhhcCCC--CchHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChh-
Q 009479 423 SLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNHPPLQ- 490 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~E~~~G~~--~n~V~cyMke~gvs~e---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~- 490 (533)
+...-+.|=|.....+..+|-+ +. =.|.++|++.+ .+..-+..++..+..-+.+..--...+|..
T Consensus 181 G~AlQltNilRDv~eD~~~gR~YlP~---e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~ 257 (343)
T 3vj8_A 181 GLFLQKTNIIRDYLEDQQGGREFWPQ---EVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQS 257 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCCSCH---HHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHhHHHHhCCCeeCCH---HHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 5555555555555566667754 32 24567898765 344556666666665444322111235543
Q ss_pred HHHHH---HHHhh-hhchhcccCCCCC
Q 009479 491 WLLPS---LNLAR-MMVVLYQNGDGYT 513 (533)
Q Consensus 491 ~~~~~---lN~aR-~~~~~Y~~~D~~t 513 (533)
....+ +-+|. .+.-+|++.|-|.
T Consensus 258 ~~~~~~ip~~lA~~tL~~i~~~~~v~~ 284 (343)
T 3vj8_A 258 VFNFCAIPQVMAIATLAACYNNQQVFK 284 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGT
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcccc
Confidence 11111 23333 4445677666553
No 50
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=39.73 E-value=3.2e+02 Score=27.77 Aligned_cols=79 Identities=8% Similarity=-0.006 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchh-hHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHH
Q 009479 351 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYP-MLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIAR 427 (533)
Q Consensus 351 ~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~-~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~R 427 (533)
....+++.+-..+..|.... .||.++|+.+-..-+|.. ...+ ...| ++. .+++..+.+ ..+-.......-
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~-~~~Ga~lag--a~~~~~~~l---~~~G~~lG~AFQ 254 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARP-LHLGASIAG--GSPQLIDAL---LHYGHDIGIAFQ 254 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHH-HHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHH
Confidence 33356777888888887543 679999999866555544 2222 1221 122 455544433 567778888889
Q ss_pred HhcCccchh
Q 009479 428 LDDDVHTYK 436 (533)
Q Consensus 428 L~NDi~S~~ 436 (533)
+.||+..+-
T Consensus 255 I~DDiLd~~ 263 (380)
T 3lk5_A 255 LRDDLLGVF 263 (380)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999998774
No 51
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=38.83 E-value=1.9e+02 Score=29.33 Aligned_cols=88 Identities=9% Similarity=-0.087 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCC----CCChHHHHhhhccccchh-hHHHH--HHHhcCCCcCcHHHHHhhcchhH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKY----VPTFEECVENSTMSSGYP-MLAVE--ALVGLEDMAITKRALDWAISVPK 417 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~----vPs~eEYl~~~~~Ssg~~-~~~~~--~~~~~g~~~lp~e~~e~~~~~p~ 417 (533)
....+.+.....+.+-..+..|...+. .+|.++|+..-..-+|+. ...++ .-+ ++.. .+++..+.+ ..
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~-lag~-a~~~~~~~l---~~ 251 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMY-MAGI-DGEKEHANA---KK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTC-CCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHH-HcCC-CcHHHHHHH---HH
Confidence 466677778888999999999876544 389999999977655554 22221 112 2331 344544333 56
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 009479 418 IIRSSSLIARLDDDVHTYKV 437 (533)
Q Consensus 418 l~~~~~~i~RL~NDi~S~~~ 437 (533)
+-.......-+.||+..+.-
T Consensus 252 ~g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 77888888899999988753
No 52
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=38.78 E-value=1.1e+02 Score=31.06 Aligned_cols=88 Identities=8% Similarity=-0.101 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCC----CCChHHHHhhhccccchh-hHHH--HHHHhcCCCcCcHHHHHhhcchhH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKY----VPTFEECVENSTMSSGYP-MLAV--EALVGLEDMAITKRALDWAISVPK 417 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~----vPs~eEYl~~~~~Ssg~~-~~~~--~~~~~~g~~~lp~e~~e~~~~~p~ 417 (533)
....+.+.....+.|-..+..|...+. .+|.++|+..-..-+|.. ...+ +.-+..|. .+++..+.+ ..
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~--~~~~~~~~l---~~ 244 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI--DSKEEHENA---KA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC--CCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--ccHHHHHHH---HH
Confidence 466677778888999999999976543 589999999977655554 2222 11122231 244444333 56
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 009479 418 IIRSSSLIARLDDDVHTYKV 437 (533)
Q Consensus 418 l~~~~~~i~RL~NDi~S~~~ 437 (533)
+-.......-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77888888899999988754
No 53
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=35.50 E-value=67 Score=32.29 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCC--CCCChHHHHhhhccccchhhHHHHHHHh-cCCCcCcHHHHHhhcchhHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAK--YVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRS 421 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g--~vPs~eEYl~~~~~Ssg~~~~~~~~~~~-~g~~~lp~e~~e~~~~~p~l~~~ 421 (533)
....+.+....++.+-..+..|.... ..||.++|+.+-..-+|.....++..-+ ++. .+++ . .....+-..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 45567777888899999999997655 5789999999977655544333222111 121 2322 2 233667888
Q ss_pred HHHHHHHhcCccchhh
Q 009479 422 SSLIARLDDDVHTYKV 437 (533)
Q Consensus 422 ~~~i~RL~NDi~S~~~ 437 (533)
.....-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888999999988753
No 54
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=34.78 E-value=1.2e+02 Score=29.76 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 422 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~ 422 (533)
....+.++...++.|-..+..| .++|+..-..-+|.....++ ..| ++ . +++..+. ...+-...
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~-~~ga~la-~--~~~~~~~---l~~~g~~l 200 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLST-VLSAYAS-K--HYNTKQQ---MLDVGKYL 200 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHH-HHHHHHT-T--CGGGHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHH-HHHHHHc-C--CHHHHHH---HHHHHHHH
Confidence 4555666677777777655543 68899886655554433222 222 22 2 3333222 25567777
Q ss_pred HHHHHHhcCccchhhhh----hcCCCCchHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q 009479 423 SLIARLDDDVHTYKVEQ----ERGDAPSSVECYVQQYGVSEEEA-CNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLN 497 (533)
Q Consensus 423 ~~i~RL~NDi~S~~~E~----~~G~~~n~V~cyMke~gvs~eeA-~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN 497 (533)
....-+.||+..+.-+. ..|. .+...+| . ..+.++| ...+.+.++++.+.+.. + | .|.+.++...+
T Consensus 201 G~aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~--l-p--~~~~~~~~L~~ 271 (289)
T 2azj_A 201 GIIYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN--I-P--FQSKYLSEIRS 271 (289)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT--S-C--CCGGGHHHHHT
T ss_pred HHHHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh--C-C--CCcHHHHHHHH
Confidence 88888999988875432 2222 3666666 3 3345777 45677777777776654 1 1 21234555555
Q ss_pred Hhh
Q 009479 498 LAR 500 (533)
Q Consensus 498 ~aR 500 (533)
+++
T Consensus 272 l~~ 274 (289)
T 2azj_A 272 LPE 274 (289)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 55
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=33.38 E-value=1.1e+02 Score=30.12 Aligned_cols=84 Identities=14% Similarity=-0.039 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHH--HhcCCCcCcHHHHHhhcchhHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL--VGLEDMAITKRALDWAISVPKIIRS 421 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~--~~~g~~~lp~e~~e~~~~~p~l~~~ 421 (533)
.....+.++...++.+-..+..|.... ||.++|+..-..-+|.....++.. ...|.. + +. + ..+-..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~-~~---l---~~~g~~ 195 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGEL--G-ED---L---YNLGVT 195 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC--C-HH---H---HHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCC--H-HH---H---HHHHHH
Confidence 356778888899999999999997544 999999998776555543322211 112332 2 21 2 456667
Q ss_pred HHHHHHHhcCccchhhh
Q 009479 422 SSLIARLDDDVHTYKVE 438 (533)
Q Consensus 422 ~~~i~RL~NDi~S~~~E 438 (533)
.....-+.||+..+.-+
T Consensus 196 lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 196 IGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCc
Confidence 77777888888877543
No 56
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=30.53 E-value=2e+02 Score=28.14 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHH
Q 009479 344 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 423 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~ 423 (533)
.....+.+.+.+++.+-..+..|......||.++|+..-..-+|.....++..-+.--. .++ ....+-....
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 45667888889999999999999876668999999999776555443322222111111 222 2255677778
Q ss_pred HHHHHhcCccchhh
Q 009479 424 LIARLDDDVHTYKV 437 (533)
Q Consensus 424 ~i~RL~NDi~S~~~ 437 (533)
...-+.||+..+.-
T Consensus 183 ~aFQi~DD~ld~~~ 196 (301)
T 2q80_A 183 LFFQIRDDYANLHS 196 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhcC
Confidence 88888999887743
No 57
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=29.70 E-value=1.7e+02 Score=29.38 Aligned_cols=88 Identities=9% Similarity=-0.027 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCChHHHHhhhccccchh-hHHHH--HHHhcCCCcCcH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWF-----------HAKY----VPTFEECVENSTMSSGYP-MLAVE--ALVGLEDMAITK 406 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~-----------~~g~----vPs~eEYl~~~~~Ssg~~-~~~~~--~~~~~g~~~lp~ 406 (533)
....+.+....++.|-..+..|. ..+. .+|.++|+..-..-+|.. ...++ .-+..| . .++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~-~~~ 229 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-A-AAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-C-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-C-CCH
Confidence 46667777888999999998887 3223 489999999977655544 22221 112223 1 233
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhcCccchhh
Q 009479 407 RALDWAISVPKIIRSSSLIARLDDDVHTYKV 437 (533)
Q Consensus 407 e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~ 437 (533)
+..+. ...+-.......-+.||+..+.-
T Consensus 230 ~~~~~---l~~~g~~lG~aFQi~DD~lD~~~ 257 (362)
T 1yhl_A 230 VEMNL---VERVAHLIGEYFQVQDDVMDCFT 257 (362)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence 32222 25677788888899999988753
No 58
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=28.42 E-value=61 Score=31.59 Aligned_cols=70 Identities=7% Similarity=0.003 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHh--cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 009479 355 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 432 (533)
Q Consensus 355 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~--~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi 432 (533)
.++.+-..+..|... .||.++|...-..-+|.....++ ..| ++. .+++..+.+ .++-.......-+.||+
T Consensus 150 ~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~-~lGailag--a~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 150 GMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGA-ACGAILGG--AAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp THHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 355666666666433 79999999875544444433222 222 122 455544433 56777788888899997
No 59
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=25.94 E-value=1.3e+02 Score=30.60 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh-HHHHhhhccccchh-hHHH--HHHHhcCCCcCcHHH--HHhhcchhHH
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTF-EECVENSTMSSGYP-MLAV--EALVGLEDMAITKRA--LDWAISVPKI 418 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~-eEYl~~~~~Ssg~~-~~~~--~~~~~~g~~~lp~e~--~e~~~~~p~l 418 (533)
....+.++...++.+-..+..|...+..+++ ++|+.+-..-+|.. ...+ +.-+..|. +++. . .....+
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~---~~~~~~~---~~l~~~ 242 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI---QVSSAQL---NLIEAI 242 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC---CCCCSST---TTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC---ChhHHHH---HHHHHH
Confidence 4566777888899999988888766634555 99999866555544 2222 11222232 2221 2 223567
Q ss_pred HHHHHHHHHHhcCccchh
Q 009479 419 IRSSSLIARLDDDVHTYK 436 (533)
Q Consensus 419 ~~~~~~i~RL~NDi~S~~ 436 (533)
-.......-+.||+..+-
T Consensus 243 g~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 243 LYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888889999998875
No 60
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.99 E-value=1.9e+02 Score=22.53 Aligned_cols=73 Identities=5% Similarity=0.098 Sum_probs=38.0
Q ss_pred HHHHHHHhh---ccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHhh
Q 009479 23 AEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLR 99 (533)
Q Consensus 23 ~~v~~~l~~---~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~~dl~~~al~FrlLR 99 (533)
+++++.|.. ..+ ..+..=.+...+.++|+. +.|+++++..+=. ++ .+... ..+. ..+|.-.-.+
T Consensus 10 ~~~~~~F~~~D~d~d---G~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~---d~--dG~i~-~~EF-~~~~~~~~~~ 76 (95)
T 1c07_A 10 AKYDEIFLKTDKDMD---GFVSGLEVREIFLKTGLP---STLLAHIWSLCDT---KD--CGKLS-KDQF-ALAFHLISQK 76 (95)
T ss_dssp HHHHHHHHHHCTTCS---SEECHHHHHHHHHTTTCC---HHHHHHHHHHHCT---TC--SSSEE-TTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC---CcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CC--CCcCC-HHHH-HHHHHHHHHH
Confidence 445556642 221 345556677788899976 6777776654411 11 11111 2333 3333333334
Q ss_pred -hcCcceehh
Q 009479 100 -QHGYKVSAD 108 (533)
Q Consensus 100 -~~Gy~vS~d 108 (533)
+.|+.++..
T Consensus 77 ~~~g~~lP~~ 86 (95)
T 1c07_A 77 LIKGIDPPHV 86 (95)
T ss_dssp HTSCCCCCSS
T ss_pred HHcCCCCCCc
Confidence 789988763
No 61
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=24.47 E-value=4.4e+02 Score=26.75 Aligned_cols=89 Identities=10% Similarity=0.019 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCC-----------------------CCCChHHHHhhhccccchh-hH--HHHHHHh
Q 009479 345 CMYYAKEAIKGLVKAYFVEAKWFHAK-----------------------YVPTFEECVENSTMSSGYP-ML--AVEALVG 398 (533)
Q Consensus 345 ~~~~~~~~~~~~~~a~l~EAkW~~~g-----------------------~vPs~eEYl~~~~~Ssg~~-~~--~~~~~~~ 398 (533)
....+.++....+.+-..+..|.... ..+|+++|+.+-..=+|.. .. +.+....
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34556666667777776666664321 2368999999866544433 21 1222222
Q ss_pred cCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhh
Q 009479 399 LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV 437 (533)
Q Consensus 399 ~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~ 437 (533)
.|.. .+++..+.+ ..+-.......-+.||+..+--
T Consensus 259 ag~~-~d~~~~~~l---~~~g~~lG~aFQI~DDiLD~~g 293 (395)
T 3mav_A 259 AGIA-VDNLIYKKI---EDISMLMGEYFQIHDDYLDIFG 293 (395)
T ss_dssp TTCC-TTCTHHHHH---HHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCc-chhHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
Confidence 3433 333333332 5566777888889999887643
No 62
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.61 E-value=62 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 009479 455 YGVSEEEACNKIKGMVEIEWMNI 477 (533)
Q Consensus 455 ~gvs~eeA~~~i~~~i~~~wk~l 477 (533)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
No 63
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.14 E-value=72 Score=27.53 Aligned_cols=66 Identities=14% Similarity=0.302 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCh-hhhhhhhhhhhhh-hccccCCC------cchhhHHHHHHHHHHhhhhhhcc
Q 009479 223 LHRIELSEISRWWKDIDFATKLP-FARDRLVECYFWI-LGVYFEPK------YSTTRKFMTKIIAIASVIDDIYD 289 (533)
Q Consensus 223 ~hq~El~~lsrWw~~~~l~~~l~-faRdR~~e~yf~~-~a~~~eP~------~s~~Rl~~ak~~~l~~viDD~fD 289 (533)
+-.+|++++.+|..++.|..... ..|| +...|.-| +-..|.|+ |+.+.-.-+|..+|-++=--+|-
T Consensus 12 l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 12 VDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp CCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 45689999999999999853333 4454 54444422 22223355 44444445577777654334443
Done!