Query 009480
Match_columns 533
No_of_seqs 595 out of 3012
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 13:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 2.7E-20 5.8E-25 154.2 9.9 100 53-152 4-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 1.1E-19 2.5E-24 150.5 11.1 95 438-532 9-103 (103)
3 cd01793 Fubi Fubi ubiquitin-li 99.8 8.8E-19 1.9E-23 137.2 8.9 74 457-532 1-74 (74)
4 KOG0003 Ubiquitin/60s ribosoma 99.8 4.3E-20 9.4E-25 145.6 0.6 76 1-76 1-76 (128)
5 PTZ00044 ubiquitin; Provisiona 99.7 7.4E-18 1.6E-22 133.0 9.1 76 457-532 1-76 (76)
6 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.3E-17 2.9E-22 130.5 8.7 74 459-532 1-74 (74)
7 KOG0004 Ubiquitin/40S ribosoma 99.7 2.3E-18 5.1E-23 147.1 4.2 76 1-76 1-76 (156)
8 cd01807 GDX_N ubiquitin-like d 99.7 1.3E-17 2.8E-22 130.7 7.5 73 1-73 1-73 (74)
9 KOG0003 Ubiquitin/60s ribosoma 99.7 1.3E-18 2.7E-23 137.3 0.4 76 305-380 1-76 (128)
10 cd01793 Fubi Fubi ubiquitin-li 99.7 2.6E-17 5.6E-22 128.9 7.8 73 1-75 1-73 (74)
11 cd01803 Ubiquitin Ubiquitin. U 99.7 4.6E-17 9.9E-22 128.6 9.0 76 457-532 1-76 (76)
12 cd01807 GDX_N ubiquitin-like d 99.7 5.5E-17 1.2E-21 127.1 8.6 73 457-529 1-73 (74)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 8.8E-17 1.9E-21 126.9 9.4 76 457-532 1-76 (76)
14 PTZ00044 ubiquitin; Provisiona 99.7 7.3E-17 1.6E-21 127.3 8.1 75 1-75 1-75 (76)
15 cd01797 NIRF_N amino-terminal 99.7 8E-17 1.7E-21 126.8 7.5 74 1-74 1-76 (78)
16 cd01804 midnolin_N Ubiquitin-l 99.7 2.1E-16 4.6E-21 124.7 9.0 77 456-533 1-77 (78)
17 cd01797 NIRF_N amino-terminal 99.7 2.9E-16 6.4E-21 123.6 8.2 74 457-530 1-76 (78)
18 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.9E-16 4.2E-21 124.0 7.0 74 79-152 1-74 (74)
19 KOG0004 Ubiquitin/40S ribosoma 99.7 7.8E-17 1.7E-21 137.8 4.6 77 457-533 1-77 (156)
20 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 5.4E-16 1.2E-20 120.1 7.9 72 76-147 1-72 (73)
21 cd01804 midnolin_N Ubiquitin-l 99.6 5.7E-16 1.2E-20 122.3 8.1 77 76-153 1-77 (78)
22 KOG0005 Ubiquitin-like protein 99.6 2.2E-16 4.8E-21 110.8 3.8 70 77-146 1-70 (70)
23 cd01798 parkin_N amino-termina 99.6 1.2E-15 2.5E-20 118.2 7.9 70 459-528 1-70 (70)
24 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.3E-15 2.9E-20 117.9 8.1 72 456-527 1-72 (73)
25 cd01803 Ubiquitin Ubiquitin. U 99.6 1E-15 2.2E-20 120.8 7.6 76 77-152 1-76 (76)
26 cd01806 Nedd8 Nebb8-like ubiq 99.6 1.3E-15 2.9E-20 120.2 8.2 76 77-152 1-76 (76)
27 cd01794 DC_UbP_C dendritic cel 99.6 7.6E-16 1.6E-20 118.5 6.3 68 80-147 2-69 (70)
28 KOG0005 Ubiquitin-like protein 99.6 4.7E-16 1E-20 109.2 3.9 70 1-70 1-70 (70)
29 cd01798 parkin_N amino-termina 99.6 1.5E-15 3.3E-20 117.6 6.6 69 307-375 1-69 (70)
30 cd01763 Sumo Small ubiquitin-r 99.6 5.7E-15 1.2E-19 119.2 9.8 79 454-532 9-87 (87)
31 cd01794 DC_UbP_C dendritic cel 99.6 3.1E-15 6.8E-20 115.1 7.8 68 460-527 2-69 (70)
32 cd01800 SF3a120_C Ubiquitin-li 99.6 4.5E-15 9.7E-20 116.7 7.7 69 464-532 5-73 (76)
33 cd01805 RAD23_N Ubiquitin-like 99.6 5.1E-15 1.1E-19 117.1 7.9 73 77-149 1-75 (77)
34 cd01805 RAD23_N Ubiquitin-like 99.6 8.4E-15 1.8E-19 115.8 9.1 73 457-529 1-75 (77)
35 cd01809 Scythe_N Ubiquitin-lik 99.6 1E-14 2.3E-19 113.7 8.5 72 457-528 1-72 (72)
36 cd01808 hPLIC_N Ubiquitin-like 99.5 1.6E-14 3.5E-19 112.1 8.0 71 457-528 1-71 (71)
37 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.1E-14 2.4E-19 115.7 7.2 74 76-149 2-77 (80)
38 cd01809 Scythe_N Ubiquitin-lik 99.5 1.3E-14 2.9E-19 113.1 7.4 71 1-71 1-71 (72)
39 PF00240 ubiquitin: Ubiquitin 99.5 1.7E-14 3.7E-19 111.5 8.0 69 462-530 1-69 (69)
40 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.6E-14 3.5E-19 114.8 7.7 73 456-528 2-76 (80)
41 cd01796 DDI1_N DNA damage indu 99.5 1.7E-14 3.7E-19 111.7 6.1 68 79-146 1-70 (71)
42 PF00240 ubiquitin: Ubiquitin 99.5 2.9E-14 6.3E-19 110.2 7.1 69 82-150 1-69 (69)
43 cd01796 DDI1_N DNA damage indu 99.5 4.6E-14 1E-18 109.3 7.7 68 459-526 1-70 (71)
44 cd01808 hPLIC_N Ubiquitin-like 99.5 4E-14 8.7E-19 109.9 7.1 71 1-72 1-71 (71)
45 cd01790 Herp_N Homocysteine-re 99.5 4.3E-14 9.3E-19 109.9 6.6 72 76-147 1-78 (79)
46 cd01800 SF3a120_C Ubiquitin-li 99.5 5E-14 1.1E-18 110.7 6.3 69 84-152 5-73 (76)
47 cd01812 BAG1_N Ubiquitin-like 99.4 3.6E-13 7.8E-18 104.7 7.4 70 457-527 1-70 (71)
48 cd01790 Herp_N Homocysteine-re 99.4 4.1E-13 8.9E-18 104.4 7.4 72 456-527 1-78 (79)
49 cd01813 UBP_N UBP ubiquitin pr 99.4 3.4E-13 7.5E-18 105.0 6.9 69 77-146 1-72 (74)
50 cd01763 Sumo Small ubiquitin-r 99.4 8E-13 1.7E-17 106.6 8.8 79 74-152 9-87 (87)
51 cd01812 BAG1_N Ubiquitin-like 99.4 4.4E-13 9.6E-18 104.2 6.9 70 77-147 1-70 (71)
52 cd01813 UBP_N UBP ubiquitin pr 99.4 7.7E-13 1.7E-17 103.0 6.6 69 381-450 1-72 (74)
53 smart00213 UBQ Ubiquitin homol 99.3 5.9E-12 1.3E-16 95.6 7.0 64 457-521 1-64 (64)
54 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 3.1E-12 6.7E-17 98.0 4.8 53 171-223 19-74 (75)
55 cd01799 Hoil1_N Ubiquitin-like 99.3 8.7E-12 1.9E-16 97.2 7.3 64 463-527 9-74 (75)
56 cd01799 Hoil1_N Ubiquitin-like 99.3 7.1E-12 1.5E-16 97.6 6.8 69 2-71 2-74 (75)
57 smart00213 UBQ Ubiquitin homol 99.3 6.5E-12 1.4E-16 95.3 6.3 64 77-141 1-64 (64)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 5.5E-12 1.2E-16 96.6 5.2 53 475-527 19-74 (75)
59 TIGR00601 rad23 UV excision re 99.2 1.2E-11 2.5E-16 125.7 7.4 73 77-149 1-76 (378)
60 cd01814 NTGP5 Ubiquitin-like N 99.2 8.4E-12 1.8E-16 102.0 4.4 76 75-150 3-92 (113)
61 cd01814 NTGP5 Ubiquitin-like N 99.2 1.2E-11 2.5E-16 101.2 5.1 76 152-227 4-93 (113)
62 TIGR00601 rad23 UV excision re 99.2 6.3E-11 1.4E-15 120.4 8.6 72 457-528 1-75 (378)
63 cd01795 USP48_C USP ubiquitin- 99.1 1.1E-10 2.5E-15 92.2 5.6 62 88-149 16-78 (107)
64 cd01795 USP48_C USP ubiquitin- 99.1 1.5E-10 3.2E-15 91.5 6.0 63 164-226 16-79 (107)
65 cd01769 UBL Ubiquitin-like dom 99.1 5.5E-10 1.2E-14 85.9 7.8 67 461-527 2-68 (69)
66 PF11976 Rad60-SLD: Ubiquitin- 99.1 5.5E-10 1.2E-14 86.9 7.6 71 457-527 1-72 (72)
67 cd01769 UBL Ubiquitin-like dom 99.0 5.2E-10 1.1E-14 86.1 6.8 67 81-147 2-68 (69)
68 KOG0011 Nucleotide excision re 99.0 2.8E-10 6.2E-15 109.5 6.3 74 77-150 1-76 (340)
69 KOG0010 Ubiquitin-like protein 99.0 3.7E-10 8E-15 114.5 6.6 74 152-226 15-88 (493)
70 KOG0010 Ubiquitin-like protein 99.0 3.2E-10 7E-15 115.0 6.1 74 75-149 14-87 (493)
71 PF11976 Rad60-SLD: Ubiquitin- 98.9 2.7E-09 5.8E-14 83.0 7.1 71 77-147 1-72 (72)
72 KOG0011 Nucleotide excision re 98.9 1.6E-09 3.4E-14 104.4 6.7 74 153-226 1-76 (340)
73 KOG0001 Ubiquitin and ubiquiti 98.9 5.1E-09 1.1E-13 81.3 8.0 73 2-74 1-73 (75)
74 KOG0001 Ubiquitin and ubiquiti 98.9 1.7E-08 3.7E-13 78.3 9.5 74 459-532 2-75 (75)
75 cd01788 ElonginB Ubiquitin-lik 98.8 1.1E-08 2.3E-13 83.3 6.8 73 457-529 1-81 (119)
76 cd01789 Alp11_N Ubiquitin-like 98.8 2.4E-08 5.1E-13 79.9 8.7 69 458-526 3-79 (84)
77 cd01789 Alp11_N Ubiquitin-like 98.7 7.3E-08 1.6E-12 77.1 7.9 70 78-147 3-80 (84)
78 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.4E-07 3E-12 76.2 8.3 69 458-526 3-81 (87)
79 cd01811 OASL_repeat1 2'-5' oli 98.6 2.2E-07 4.7E-12 69.4 6.9 71 77-148 1-76 (80)
80 cd01811 OASL_repeat1 2'-5' oli 98.5 3.4E-07 7.3E-12 68.4 7.1 73 153-226 1-78 (80)
81 cd01788 ElonginB Ubiquitin-lik 98.5 1.9E-07 4.2E-12 76.0 6.3 72 1-72 1-80 (119)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.5 5.8E-07 1.3E-11 75.3 8.2 74 153-226 3-90 (111)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.5 6.8E-07 1.5E-11 74.9 8.3 75 76-150 2-90 (111)
84 PLN02560 enoyl-CoA reductase 98.5 2.9E-07 6.4E-12 91.5 7.2 69 77-145 1-80 (308)
85 PF14560 Ubiquitin_2: Ubiquiti 98.5 7.2E-07 1.6E-11 72.0 8.1 72 77-148 2-83 (87)
86 PLN02560 enoyl-CoA reductase 98.5 4E-07 8.8E-12 90.5 7.9 70 457-526 1-81 (308)
87 KOG1769 Ubiquitin-like protein 98.4 1.9E-06 4.1E-11 68.8 9.3 78 456-533 20-97 (99)
88 KOG4248 Ubiquitin-like protein 98.4 4.6E-07 1E-11 99.1 6.0 73 154-227 4-76 (1143)
89 KOG4248 Ubiquitin-like protein 98.3 5.1E-07 1.1E-11 98.8 5.5 72 78-150 4-75 (1143)
90 PF11543 UN_NPL4: Nuclear pore 98.3 1.1E-06 2.4E-11 69.2 5.6 71 455-526 3-78 (80)
91 cd01801 Tsc13_N Ubiquitin-like 98.2 3.9E-06 8.5E-11 66.0 6.4 53 474-526 20-75 (77)
92 KOG4261 Talin [Cytoskeleton] 98.2 2.1E-07 4.6E-12 98.3 -1.5 172 314-525 12-192 (1003)
93 cd01801 Tsc13_N Ubiquitin-like 98.1 4.6E-06 9.9E-11 65.6 5.7 52 94-145 20-74 (77)
94 PF11543 UN_NPL4: Nuclear pore 98.0 8E-06 1.7E-10 64.3 5.3 71 75-146 3-78 (80)
95 cd00196 UBQ Ubiquitin-like pro 98.0 1.4E-05 3E-10 59.2 6.2 64 312-375 5-68 (69)
96 cd00196 UBQ Ubiquitin-like pro 98.0 3.2E-05 7E-10 57.2 7.6 63 465-527 6-68 (69)
97 KOG1872 Ubiquitin-specific pro 98.0 1.1E-05 2.3E-10 82.1 6.0 71 381-452 4-75 (473)
98 KOG3493 Ubiquitin-like protein 97.9 5.6E-06 1.2E-10 59.9 1.2 69 458-526 3-71 (73)
99 KOG3493 Ubiquitin-like protein 97.8 7.8E-06 1.7E-10 59.1 1.6 69 382-450 3-71 (73)
100 PF11470 TUG-UBL1: GLUT4 regul 97.8 5.9E-05 1.3E-09 56.6 5.4 65 309-373 1-65 (65)
101 KOG1769 Ubiquitin-like protein 97.7 0.00022 4.9E-09 57.1 8.7 76 229-304 21-96 (99)
102 KOG4495 RNA polymerase II tran 97.7 4.1E-05 8.8E-10 60.1 3.9 51 468-518 13-65 (110)
103 KOG0006 E3 ubiquitin-protein l 97.6 8.4E-05 1.8E-09 71.3 5.8 73 77-149 1-77 (446)
104 KOG0006 E3 ubiquitin-protein l 97.6 0.00011 2.3E-09 70.6 5.7 70 457-526 1-73 (446)
105 PF13019 Telomere_Sde2: Telome 97.5 0.00048 1E-08 61.0 8.5 76 457-532 1-88 (162)
106 COG5227 SMT3 Ubiquitin-like pr 97.4 0.00017 3.7E-09 56.1 4.1 78 456-533 24-101 (103)
107 KOG4495 RNA polymerase II tran 97.3 0.0003 6.5E-09 55.4 4.3 62 1-62 1-65 (110)
108 KOG1872 Ubiquitin-specific pro 97.1 0.00092 2E-08 68.3 6.3 72 154-226 5-77 (473)
109 PF11470 TUG-UBL1: GLUT4 regul 96.8 0.0044 9.6E-08 46.5 6.3 63 463-525 3-65 (65)
110 PF08817 YukD: WXG100 protein 96.7 0.0047 1E-07 48.7 6.2 68 458-525 4-78 (79)
111 PF08817 YukD: WXG100 protein 96.5 0.008 1.7E-07 47.4 6.0 68 230-297 4-78 (79)
112 PF10302 DUF2407: DUF2407 ubiq 96.4 0.0077 1.7E-07 49.3 5.5 57 79-135 3-64 (97)
113 PF00789 UBX: UBX domain; Int 96.3 0.031 6.6E-07 44.3 8.7 72 455-526 5-81 (82)
114 PF13019 Telomere_Sde2: Telome 96.2 0.018 4E-07 51.1 7.5 75 77-151 1-87 (162)
115 PF00789 UBX: UBX domain; Int 96.1 0.035 7.6E-07 43.9 8.1 71 152-222 6-81 (82)
116 KOG0013 Uncharacterized conser 96.0 0.0089 1.9E-07 54.6 4.6 62 84-145 154-215 (231)
117 COG5227 SMT3 Ubiquitin-like pr 95.9 0.027 5.8E-07 44.1 6.1 69 229-297 25-93 (103)
118 PF10302 DUF2407: DUF2407 ubiq 95.7 0.02 4.3E-07 46.8 5.2 49 163-211 12-64 (97)
119 KOG0013 Uncharacterized conser 95.6 0.018 3.9E-07 52.6 4.9 64 465-528 155-218 (231)
120 smart00166 UBX Domain present 95.6 0.063 1.4E-06 42.3 7.6 70 152-221 4-78 (80)
121 smart00166 UBX Domain present 95.5 0.086 1.9E-06 41.5 8.0 71 456-526 4-79 (80)
122 cd01767 UBX UBX (ubiquitin reg 95.2 0.15 3.2E-06 39.8 8.3 68 456-525 2-74 (77)
123 PF09379 FERM_N: FERM N-termin 95.1 0.097 2.1E-06 41.1 7.1 65 309-373 1-72 (80)
124 cd01770 p47_UBX p47-like ubiqu 95.0 0.16 3.4E-06 40.0 7.7 67 455-521 3-73 (79)
125 COG5417 Uncharacterized small 94.9 0.11 2.4E-06 39.3 6.2 67 307-373 9-80 (81)
126 cd01772 SAKS1_UBX SAKS1-like U 94.9 0.15 3.3E-06 40.0 7.5 68 153-221 5-77 (79)
127 cd01767 UBX UBX (ubiquitin reg 94.7 0.18 4E-06 39.3 7.5 68 380-449 2-74 (77)
128 PF12436 USP7_ICP0_bdg: ICP0-b 94.7 0.2 4.3E-06 48.8 9.4 106 319-424 89-223 (249)
129 cd01770 p47_UBX p47-like ubiqu 94.7 0.16 3.5E-06 39.9 7.1 68 152-219 4-75 (79)
130 cd01772 SAKS1_UBX SAKS1-like U 94.6 0.24 5.1E-06 38.9 8.0 69 457-526 5-78 (79)
131 cd01773 Faf1_like1_UBX Faf1 ik 94.4 0.37 8E-06 38.0 8.5 73 455-528 4-81 (82)
132 KOG1639 Steroid reductase requ 94.3 0.075 1.6E-06 50.0 5.2 70 457-526 1-77 (297)
133 COG5417 Uncharacterized small 94.2 0.22 4.8E-06 37.7 6.4 69 381-449 7-80 (81)
134 cd01771 Faf1_UBX Faf1 UBX doma 94.2 0.38 8.3E-06 37.8 8.3 73 455-528 3-80 (80)
135 cd01774 Faf1_like2_UBX Faf1 ik 94.0 0.35 7.7E-06 38.5 7.8 70 151-221 3-82 (85)
136 PF11620 GABP-alpha: GA-bindin 93.9 0.35 7.5E-06 37.8 7.2 59 240-298 4-62 (88)
137 cd01774 Faf1_like2_UBX Faf1 ik 93.7 0.35 7.6E-06 38.6 7.3 69 305-374 5-83 (85)
138 PF14533 USP7_C2: Ubiquitin-sp 93.5 0.5 1.1E-05 44.8 9.4 102 87-190 34-160 (213)
139 PF14533 USP7_C2: Ubiquitin-sp 93.3 0.52 1.1E-05 44.7 9.2 105 391-497 34-163 (213)
140 cd01773 Faf1_like1_UBX Faf1 ik 92.9 0.66 1.4E-05 36.6 7.5 69 77-146 6-79 (82)
141 PRK06437 hypothetical protein; 92.9 0.92 2E-05 34.4 8.2 59 465-532 9-67 (67)
142 cd01771 Faf1_UBX Faf1 UBX doma 92.7 0.8 1.7E-05 36.0 7.8 69 152-221 4-77 (80)
143 KOG3206 Alpha-tubulin folding 92.4 0.37 8.1E-06 44.1 6.3 58 469-526 15-79 (234)
144 PF15044 CLU_N: Mitochondrial 91.4 0.35 7.5E-06 37.7 4.4 56 473-528 1-58 (76)
145 KOG1639 Steroid reductase requ 91.2 0.28 6.1E-06 46.2 4.3 69 306-374 2-77 (297)
146 PF12436 USP7_ICP0_bdg: ICP0-b 90.9 0.91 2E-05 44.2 7.9 107 243-349 89-224 (249)
147 PF11620 GABP-alpha: GA-bindin 90.9 0.79 1.7E-05 35.9 5.7 60 469-528 5-64 (88)
148 cd01760 RBD Ubiquitin-like dom 90.7 0.48 1.1E-05 36.4 4.5 44 308-351 3-46 (72)
149 smart00455 RBD Raf-like Ras-bi 90.3 0.56 1.2E-05 35.9 4.6 44 308-351 3-46 (70)
150 PRK08364 sulfur carrier protei 90.0 2.7 6E-05 32.0 8.3 66 457-532 5-70 (70)
151 cd00754 MoaD Ubiquitin domain 89.9 1.3 2.9E-05 34.4 6.6 59 469-532 18-80 (80)
152 PF15044 CLU_N: Mitochondrial 87.7 1 2.2E-05 35.1 4.4 56 169-224 1-58 (76)
153 PF14453 ThiS-like: ThiS-like 87.3 2.7 5.8E-05 30.6 6.0 56 457-528 1-56 (57)
154 KOG3206 Alpha-tubulin folding 87.3 2.4 5.2E-05 39.1 7.1 95 89-183 15-120 (234)
155 PF09379 FERM_N: FERM N-termin 87.2 4.2 9.1E-05 31.6 7.9 65 5-69 1-72 (80)
156 PF12754 Blt1: Cell-cycle cont 86.5 0.21 4.5E-06 49.1 0.0 57 476-532 103-181 (309)
157 PLN02799 Molybdopterin synthas 86.2 2.6 5.7E-05 33.1 6.3 61 467-532 19-82 (82)
158 PRK06437 hypothetical protein; 86.2 5.5 0.00012 30.1 7.7 55 313-376 9-63 (67)
159 smart00295 B41 Band 4.1 homolo 85.9 3.5 7.7E-05 38.4 8.1 70 305-374 4-81 (207)
160 cd06409 PB1_MUG70 The MUG70 pr 85.8 2.1 4.5E-05 34.1 5.3 43 307-349 3-48 (86)
161 PF14836 Ubiquitin_3: Ubiquiti 84.7 4.8 0.0001 32.1 6.8 64 314-378 13-82 (88)
162 cd01760 RBD Ubiquitin-like dom 84.5 2.7 5.9E-05 32.3 5.3 45 3-47 2-46 (72)
163 KOG4583 Membrane-associated ER 83.7 0.55 1.2E-05 46.3 1.4 72 76-147 9-86 (391)
164 cd06409 PB1_MUG70 The MUG70 pr 83.4 3.6 7.8E-05 32.8 5.7 43 459-501 3-48 (86)
165 PRK06488 sulfur carrier protei 82.8 7.8 0.00017 28.9 7.2 60 465-532 6-65 (65)
166 smart00455 RBD Raf-like Ras-bi 82.8 3.6 7.8E-05 31.4 5.3 45 3-47 2-46 (70)
167 cd06406 PB1_P67 A PB1 domain i 82.6 5.5 0.00012 31.2 6.3 37 468-504 12-48 (80)
168 cd00754 MoaD Ubiquitin domain 82.3 4.4 9.5E-05 31.4 5.9 57 240-301 17-77 (80)
169 cd06406 PB1_P67 A PB1 domain i 82.2 5.2 0.00011 31.3 6.0 38 164-201 12-49 (80)
170 cd01818 TIAM1_RBD Ubiquitin do 81.9 3.7 8.1E-05 31.5 5.0 43 308-350 3-45 (77)
171 PF14836 Ubiquitin_3: Ubiquiti 81.7 7.5 0.00016 31.1 6.9 64 87-151 14-83 (88)
172 TIGR01682 moaD molybdopterin c 81.6 8 0.00017 30.2 7.2 59 469-532 18-80 (80)
173 PRK05659 sulfur carrier protei 81.2 9.2 0.0002 28.5 7.1 58 470-532 9-66 (66)
174 PF02196 RBD: Raf-like Ras-bin 80.6 4.9 0.00011 30.7 5.4 45 307-351 3-47 (71)
175 cd00565 ThiS ThiaminS ubiquiti 80.1 7.6 0.00016 29.0 6.3 59 469-532 7-65 (65)
176 PF02597 ThiS: ThiS family; I 79.5 8 0.00017 29.6 6.5 63 468-532 13-77 (77)
177 PRK07440 hypothetical protein; 79.4 14 0.0003 28.1 7.6 67 456-532 4-70 (70)
178 TIGR01683 thiS thiamine biosyn 79.1 11 0.00024 28.0 6.8 58 470-532 7-64 (64)
179 PF02196 RBD: Raf-like Ras-bin 78.9 7.7 0.00017 29.7 6.0 45 3-47 3-47 (71)
180 TIGR01687 moaD_arch MoaD famil 78.8 15 0.00033 29.1 8.1 61 468-532 17-88 (88)
181 PRK05863 sulfur carrier protei 78.5 11 0.00025 28.1 6.8 57 470-532 9-65 (65)
182 PRK06944 sulfur carrier protei 78.2 17 0.00038 26.9 7.8 57 470-532 9-65 (65)
183 PRK08053 sulfur carrier protei 77.2 19 0.00042 26.9 7.7 58 470-532 9-66 (66)
184 cd01776 Rin1_RA Ubiquitin doma 77.0 3.3 7.2E-05 32.2 3.4 33 317-349 16-49 (87)
185 cd06407 PB1_NLP A PB1 domain i 74.9 11 0.00023 29.8 6.0 65 464-528 7-81 (82)
186 smart00666 PB1 PB1 domain. Pho 74.8 12 0.00025 29.1 6.3 44 459-503 4-47 (81)
187 PF10790 DUF2604: Protein of U 74.6 12 0.00026 27.6 5.5 64 237-300 4-71 (76)
188 smart00295 B41 Band 4.1 homolo 74.6 22 0.00049 32.8 9.4 75 455-529 2-84 (207)
189 cd06407 PB1_NLP A PB1 domain i 74.0 6.2 0.00014 31.2 4.4 41 311-351 6-47 (82)
190 TIGR03028 EpsE polysaccharide 73.7 88 0.0019 30.1 18.4 172 210-410 1-192 (239)
191 PF14453 ThiS-like: ThiS-like 73.6 17 0.00038 26.4 6.2 48 318-376 9-56 (57)
192 TIGR03028 EpsE polysaccharide 73.4 89 0.0019 30.0 20.3 215 286-528 1-237 (239)
193 PRK06083 sulfur carrier protei 71.9 22 0.00048 28.2 7.1 58 470-532 27-84 (84)
194 KOG0012 DNA damage inducible p 71.8 4.9 0.00011 40.4 4.0 62 465-526 11-74 (380)
195 KOG2982 Uncharacterized conser 70.3 6 0.00013 39.1 4.2 56 319-374 352-415 (418)
196 cd01818 TIAM1_RBD Ubiquitin do 69.4 13 0.00028 28.6 5.0 49 232-280 3-51 (77)
197 PRK07696 sulfur carrier protei 68.1 36 0.00079 25.6 7.3 57 471-532 10-67 (67)
198 PF02597 ThiS: ThiS family; I 68.0 16 0.00035 27.9 5.6 61 240-302 13-75 (77)
199 KOG4261 Talin [Cytoskeleton] 67.9 8 0.00017 42.6 4.9 106 241-349 15-130 (1003)
200 KOG0012 DNA damage inducible p 67.2 6.8 0.00015 39.4 4.0 67 161-227 11-79 (380)
201 PRK08364 sulfur carrier protei 66.8 30 0.00065 26.2 6.7 52 316-376 15-66 (70)
202 PF10790 DUF2604: Protein of U 66.5 21 0.00045 26.4 5.3 66 84-149 3-72 (76)
203 TIGR01682 moaD molybdopterin c 65.4 28 0.00061 27.0 6.6 56 240-300 17-76 (80)
204 TIGR02958 sec_mycoba_snm4 secr 64.9 23 0.0005 37.7 7.8 70 459-529 5-81 (452)
205 cd01817 RGS12_RBD Ubiquitin do 64.8 19 0.0004 27.7 5.0 44 5-48 4-47 (73)
206 PF08337 Plexin_cytopl: Plexin 64.7 25 0.00054 38.0 7.9 65 390-454 201-291 (539)
207 cd01817 RGS12_RBD Ubiquitin do 64.5 14 0.00031 28.3 4.4 42 311-352 6-47 (73)
208 smart00144 PI3K_rbd PI3-kinase 64.4 36 0.00079 28.3 7.4 63 11-73 29-105 (108)
209 PLN02799 Molybdopterin synthas 63.7 20 0.00044 28.0 5.5 57 239-300 19-78 (82)
210 TIGR01687 moaD_arch MoaD famil 62.9 38 0.00082 26.7 7.0 60 239-302 16-86 (88)
211 PF00788 RA: Ras association ( 62.9 26 0.00055 27.8 6.1 44 316-359 18-69 (93)
212 KOG2086 Protein tyrosine phosp 62.8 9.5 0.00021 38.8 4.1 66 154-219 307-376 (380)
213 smart00666 PB1 PB1 domain. Pho 62.6 39 0.00084 26.1 6.9 44 79-123 4-47 (81)
214 COG2104 ThiS Sulfur transfer p 62.3 67 0.0014 24.3 8.3 59 469-532 10-68 (68)
215 cd06408 PB1_NoxR The PB1 domai 61.7 25 0.00053 28.0 5.4 51 307-360 3-54 (86)
216 PF00564 PB1: PB1 domain; Int 61.7 30 0.00065 26.9 6.2 43 459-502 4-47 (84)
217 KOG4250 TANK binding protein k 61.5 16 0.00034 40.3 5.7 45 6-50 320-364 (732)
218 PF12754 Blt1: Cell-cycle cont 60.5 2.8 6.2E-05 41.3 0.0 62 75-136 77-158 (309)
219 KOG4250 TANK binding protein k 60.1 21 0.00045 39.4 6.3 43 84-126 322-364 (732)
220 cd01768 RA RA (Ras-associating 58.8 33 0.00072 27.0 6.0 37 313-349 11-49 (87)
221 KOG4583 Membrane-associated ER 58.3 4.7 0.0001 40.0 1.1 60 456-515 9-72 (391)
222 KOG2982 Uncharacterized conser 58.0 14 0.00031 36.6 4.2 56 471-526 352-415 (418)
223 KOG2086 Protein tyrosine phosp 57.9 20 0.00043 36.6 5.4 67 229-295 306-376 (380)
224 cd06408 PB1_NoxR The PB1 domai 57.6 56 0.0012 26.0 6.8 44 77-122 3-46 (86)
225 PRK06488 sulfur carrier protei 57.2 45 0.00097 24.7 6.1 58 311-376 4-61 (65)
226 cd06411 PB1_p51 The PB1 domain 56.7 15 0.00033 28.6 3.4 35 316-350 8-42 (78)
227 cd01777 SNX27_RA Ubiquitin dom 56.7 24 0.00053 28.0 4.6 39 230-268 3-41 (87)
228 PRK11130 moaD molybdopterin sy 55.0 68 0.0015 25.0 7.1 58 470-532 18-81 (81)
229 smart00314 RA Ras association 54.0 27 0.00058 27.8 4.7 38 312-349 13-52 (90)
230 PTZ00380 microtubule-associate 53.9 24 0.00051 30.1 4.4 48 467-514 41-88 (121)
231 cd01777 SNX27_RA Ubiquitin dom 53.9 28 0.0006 27.7 4.5 39 2-40 3-41 (87)
232 cd06410 PB1_UP2 Uncharacterize 53.6 44 0.00094 27.3 5.8 45 461-506 17-63 (97)
233 PF10209 DUF2340: Uncharacteri 52.2 29 0.00063 29.5 4.6 59 89-147 17-107 (122)
234 cd05992 PB1 The PB1 domain is 52.1 30 0.00064 26.7 4.6 39 312-350 7-46 (81)
235 KOG3439 Protein conjugation fa 51.7 41 0.00089 27.9 5.3 50 295-350 31-80 (116)
236 cd05992 PB1 The PB1 domain is 50.7 45 0.00098 25.6 5.5 38 466-503 9-47 (81)
237 PF14732 UAE_UbL: Ubiquitin/SU 50.7 47 0.001 26.5 5.5 54 471-526 2-67 (87)
238 cd06396 PB1_NBR1 The PB1 domai 50.4 34 0.00073 26.9 4.5 37 311-349 6-44 (81)
239 KOG4598 Putative ubiquitin-spe 50.4 31 0.00068 37.8 5.6 177 315-496 877-1101(1203)
240 cd06411 PB1_p51 The PB1 domain 49.7 33 0.00071 26.8 4.2 36 468-503 8-43 (78)
241 smart00314 RA Ras association 49.2 44 0.00095 26.5 5.3 38 2-39 6-44 (90)
242 cd06398 PB1_Joka2 The PB1 doma 48.8 56 0.0012 26.3 5.7 65 465-529 8-88 (91)
243 PF14451 Ub-Mut7C: Mut7-C ubiq 46.8 63 0.0014 25.4 5.6 57 312-377 20-77 (81)
244 cd06396 PB1_NBR1 The PB1 domai 46.4 62 0.0013 25.5 5.4 37 463-501 6-44 (81)
245 PF00564 PB1: PB1 domain; Int 46.4 91 0.002 24.1 6.7 39 85-123 9-48 (84)
246 cd00565 ThiS ThiaminS ubiquiti 46.3 84 0.0018 23.2 6.1 57 313-376 5-61 (65)
247 cd01764 Urm1 Urm1-like ubuitin 46.1 31 0.00067 28.0 3.9 60 167-228 23-94 (94)
248 cd01768 RA RA (Ras-associating 45.6 1.4E+02 0.0031 23.2 8.2 36 2-37 3-39 (87)
249 TIGR01683 thiS thiamine biosyn 45.1 96 0.0021 22.8 6.2 58 312-376 3-60 (64)
250 PF14847 Ras_bdg_2: Ras-bindin 44.9 65 0.0014 26.8 5.6 36 3-38 3-38 (105)
251 cd01787 GRB7_RA RA (RAS-associ 44.3 48 0.001 26.3 4.5 38 383-420 5-42 (85)
252 PF02824 TGS: TGS domain; Int 43.5 32 0.00069 25.2 3.3 59 307-374 1-59 (60)
253 PF10209 DUF2340: Uncharacteri 43.4 42 0.00091 28.5 4.3 55 169-223 22-107 (122)
254 TIGR02958 sec_mycoba_snm4 secr 42.8 84 0.0018 33.5 7.6 70 230-300 4-80 (452)
255 PRK11840 bifunctional sulfur c 42.1 1E+02 0.0022 31.2 7.5 58 470-532 9-66 (326)
256 PF14847 Ras_bdg_2: Ras-bindin 41.9 31 0.00068 28.6 3.3 36 307-342 3-38 (105)
257 PF08337 Plexin_cytopl: Plexin 41.6 40 0.00086 36.5 4.9 66 9-74 200-291 (539)
258 PF11069 DUF2870: Protein of u 41.5 22 0.00048 28.9 2.3 23 118-141 3-25 (98)
259 PRK05659 sulfur carrier protei 41.0 1.2E+02 0.0027 22.3 6.3 59 311-376 4-62 (66)
260 cd01775 CYR1_RA Ubiquitin doma 40.5 1.2E+02 0.0025 24.8 6.2 42 458-499 4-46 (97)
261 smart00144 PI3K_rbd PI3-kinase 40.2 2.2E+02 0.0047 23.7 8.4 73 77-149 18-105 (108)
262 KOG3439 Protein conjugation fa 39.3 78 0.0017 26.3 5.1 40 163-202 45-84 (116)
263 cd01764 Urm1 Urm1-like ubuitin 38.8 68 0.0015 26.0 4.8 59 472-532 24-94 (94)
264 COG5100 NPL4 Nuclear pore prot 37.6 1.1E+02 0.0025 31.3 7.0 70 457-527 1-78 (571)
265 PF02991 Atg8: Autophagy prote 37.4 62 0.0013 26.8 4.4 45 471-515 37-82 (104)
266 PF14451 Ub-Mut7C: Mut7-C ubiq 37.0 1.4E+02 0.003 23.5 6.1 53 466-527 22-75 (81)
267 PF14732 UAE_UbL: Ubiquitin/SU 36.6 1.5E+02 0.0033 23.6 6.4 55 323-377 7-70 (87)
268 PF11069 DUF2870: Protein of u 35.9 45 0.00097 27.1 3.2 35 498-532 3-38 (98)
269 KOG4572 Predicted DNA-binding 35.8 47 0.001 37.1 4.3 52 465-516 3-56 (1424)
270 cd06410 PB1_UP2 Uncharacterize 35.4 1.3E+02 0.0028 24.6 5.9 40 81-121 17-56 (97)
271 KOG2689 Predicted ubiquitin re 35.1 80 0.0017 30.8 5.3 72 379-450 209-285 (290)
272 PF02017 CIDE-N: CIDE-N domain 35.1 70 0.0015 25.0 4.1 49 325-376 21-71 (78)
273 PF00794 PI3K_rbd: PI3-kinase 34.9 1E+02 0.0022 25.4 5.4 63 9-71 26-101 (106)
274 PF08825 E2_bind: E2 binding d 34.5 51 0.0011 26.2 3.3 55 471-526 1-69 (84)
275 PF02017 CIDE-N: CIDE-N domain 34.4 1.1E+02 0.0024 23.9 5.1 34 477-510 21-56 (78)
276 cd01615 CIDE_N CIDE_N domain, 34.2 73 0.0016 24.9 4.0 37 324-360 20-58 (78)
277 PF00788 RA: Ras association ( 33.7 1.4E+02 0.003 23.4 6.0 27 12-38 18-44 (93)
278 cd01787 GRB7_RA RA (RAS-associ 33.6 1.3E+02 0.0028 24.0 5.4 56 79-134 5-67 (85)
279 PF10787 YfmQ: Uncharacterised 33.1 1.6E+02 0.0035 25.6 6.3 93 165-257 17-123 (149)
280 smart00266 CAD Domains present 32.3 86 0.0019 24.2 4.1 37 324-360 18-56 (74)
281 KOG4572 Predicted DNA-binding 32.0 73 0.0016 35.7 5.0 58 237-294 3-62 (1424)
282 KOG0007 Splicing factor 3a, su 31.8 22 0.00047 36.4 1.1 50 83-132 289-339 (341)
283 COG1163 DRG Predicted GTPase [ 31.6 1.9E+02 0.0042 29.2 7.5 56 319-375 308-364 (365)
284 PF03671 Ufm1: Ubiquitin fold 31.0 1.9E+02 0.004 22.2 5.5 59 468-526 17-76 (76)
285 PRK01777 hypothetical protein; 30.0 3E+02 0.0066 22.3 7.3 65 456-529 3-77 (95)
286 KOG2689 Predicted ubiquitin re 29.9 1.2E+02 0.0026 29.6 5.6 71 151-221 209-284 (290)
287 KOG0007 Splicing factor 3a, su 29.7 26 0.00056 35.8 1.2 51 159-209 289-340 (341)
288 cd06397 PB1_UP1 Uncharacterize 29.4 1.2E+02 0.0026 23.8 4.5 38 464-501 7-44 (82)
289 PTZ00380 microtubule-associate 29.3 58 0.0013 27.7 3.0 57 91-148 45-105 (121)
290 cd06398 PB1_Joka2 The PB1 doma 28.6 1.5E+02 0.0032 23.9 5.2 40 311-350 6-51 (91)
291 PRK08453 fliD flagellar cappin 28.6 1.4E+02 0.0031 33.4 6.7 86 311-397 134-236 (673)
292 PF06234 TmoB: Toluene-4-monoo 28.2 3.1E+02 0.0066 21.8 7.1 61 468-528 16-84 (85)
293 PRK05863 sulfur carrier protei 27.7 2.3E+02 0.0051 20.9 5.9 56 237-300 6-61 (65)
294 PF10787 YfmQ: Uncharacterised 27.7 1.6E+02 0.0034 25.7 5.3 89 17-105 21-123 (149)
295 PF11834 DUF3354: Domain of un 27.7 80 0.0017 24.0 3.2 43 477-525 26-68 (69)
296 cd01611 GABARAP Ubiquitin doma 27.7 1E+02 0.0022 25.9 4.3 59 470-528 44-106 (112)
297 cd01766 Ufm1 Urm1-like ubiquit 27.0 2.9E+02 0.0063 21.2 6.3 63 469-531 18-81 (82)
298 TIGR03027 pepcterm_export puta 26.2 4.7E+02 0.01 23.3 12.0 138 363-527 1-162 (165)
299 PRK06083 sulfur carrier protei 26.2 2.9E+02 0.0063 21.8 6.4 61 84-151 23-83 (84)
300 smart00266 CAD Domains present 26.2 1.4E+02 0.003 23.1 4.3 35 476-510 18-54 (74)
301 PF04017 DUF366: Domain of unk 26.1 2E+02 0.0043 26.3 5.9 98 268-385 7-132 (183)
302 cd01775 CYR1_RA Ubiquitin doma 25.3 2E+02 0.0044 23.4 5.3 38 312-349 10-48 (97)
303 PF02505 MCR_D: Methyl-coenzym 24.9 4.9E+02 0.011 23.1 8.2 109 13-135 6-120 (153)
304 PF00794 PI3K_rbd: PI3-kinase 24.6 3.1E+02 0.0068 22.4 6.7 71 457-527 17-101 (106)
305 TIGR00038 efp translation elon 23.8 88 0.0019 28.8 3.5 86 3-95 38-126 (184)
306 cd01782 AF6_RA_repeat1 Ubiquit 23.6 2.7E+02 0.0058 23.2 5.7 36 1-36 24-61 (112)
307 KOG2561 Adaptor protein NUB1, 23.5 61 0.0013 33.8 2.5 54 470-523 53-106 (568)
308 cd01782 AF6_RA_repeat1 Ubiquit 22.8 2.3E+02 0.0049 23.7 5.2 45 305-349 24-75 (112)
309 PF06234 TmoB: Toluene-4-monoo 22.5 2.9E+02 0.0063 22.0 5.5 59 89-147 17-83 (85)
310 PRK08453 fliD flagellar cappin 22.4 2.3E+02 0.0049 31.8 6.8 86 236-321 135-236 (673)
311 cd01612 APG12_C Ubiquitin-like 22.2 3E+02 0.0066 21.9 5.8 58 469-527 18-80 (87)
312 cd01615 CIDE_N CIDE_N domain, 22.0 1.7E+02 0.0036 22.9 4.1 35 476-510 20-56 (78)
313 cd06539 CIDE_N_A CIDE_N domain 21.4 1.5E+02 0.0032 23.2 3.7 37 324-360 20-58 (78)
314 PRK05738 rplW 50S ribosomal pr 21.1 1.1E+02 0.0023 24.7 3.1 34 313-346 19-52 (92)
315 PRK05738 rplW 50S ribosomal pr 20.8 1.5E+02 0.0032 23.9 3.8 39 466-504 20-59 (92)
316 cd01666 TGS_DRG_C TGS_DRG_C: 20.7 1.5E+02 0.0033 22.9 3.7 56 318-374 18-74 (75)
317 PF10407 Cytokin_check_N: Cdc1 20.5 3.5E+02 0.0076 20.8 5.5 60 468-528 4-70 (73)
318 KOG3391 Transcriptional co-rep 20.5 79 0.0017 27.3 2.2 27 502-528 110-136 (151)
319 PF02192 PI3K_p85B: PI3-kinase 20.3 98 0.0021 24.2 2.5 21 393-413 2-22 (78)
320 cd01783 DAGK_delta_RA Ubiquiti 20.3 1.4E+02 0.0029 24.5 3.4 33 316-348 18-53 (97)
321 PF02192 PI3K_p85B: PI3-kinase 20.0 90 0.0019 24.4 2.3 22 317-338 2-23 (78)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=2.7e-20 Score=154.23 Aligned_cols=100 Identities=42% Similarity=0.613 Sum_probs=95.2
Q ss_pred CCCcccccccccccceEEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCcc
Q 009480 53 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (533)
Q Consensus 53 ~~~l~~y~i~~~sti~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L 132 (533)
.+....+++.+-+++|+++++++.|+|+||+++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (103)
T cd01802 4 KKEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL 83 (103)
T ss_pred ccCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCceeEEEEeecc
Q 009480 133 ADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 133 ~~y~i~~~s~i~l~~~~~~~ 152 (533)
++|+|.++++|+++++++||
T Consensus 84 ~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 84 NDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HHcCCCCCCEEEEEEecCCC
Confidence 99999999999999998775
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.81 E-value=1.1e-19 Score=150.45 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=90.7
Q ss_pred ccccccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCC
Q 009480 438 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 517 (533)
Q Consensus 438 ~~~i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I 517 (533)
-+++.+-+++++..+.++.|+|+|++..|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 45566668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCC
Q 009480 518 QKESTLHLVLRLRGG 532 (533)
Q Consensus 518 ~~~~tl~l~~rl~GG 532 (533)
+++++|+|++|++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999998
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=8.8e-19 Score=137.23 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++. +++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.||++|||++++|||+++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 689999999999999999999999999999999999999999999999999999999999999998
No 4
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.3e-20 Score=145.57 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecCC
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~~ 76 (533)
||||+.++.|+|++++|+|||||+++|++|++++|+|+++|+|+|+|++|+|++|+++|+|+..+|+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987765
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=7.4e-18 Score=133.02 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.9
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+++++++|++.+|++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=1.3e-17 Score=130.53 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.7
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|||++..|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|.+|++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.3e-18 Score=147.06 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.1
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecCC
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~~ 76 (533)
|+|||+++.|++++++|.++|||+++|+|||+++|||+++|+|+|+|++|+|+++|+||+|+.++|+||+++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987765
No 8
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.72 E-value=1.3e-17 Score=130.72 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEe
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~ 73 (533)
|+|+|++.+|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.3e-18 Score=137.33 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=73.1
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEecCC
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~ 380 (533)
|++|++++.|+|++++++|++||.++|++|+++.||||++|+|.|+|++|+|++|+++|||+..||||+.++.+++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999887765
No 10
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=2.6e-17 Score=128.91 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecC
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~ 75 (533)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++|+++++++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 79999999999999999999999999999999999999999999999999999999999998764
No 11
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.70 E-value=4.6e-17 Score=128.55 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++..|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 12
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.70 E-value=5.5e-17 Score=127.12 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.3
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
|+|+|++..|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999985
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.69 E-value=8.8e-17 Score=126.92 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++.+|+.+.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=7.3e-17 Score=127.32 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecC
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~ 75 (533)
|||||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.++.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 15
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.68 E-value=8e-17 Score=126.78 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcE-EEEE-ecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEec
Q 009480 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (533)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~ 74 (533)
|||||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999998864
No 16
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.67 E-value=2.1e-16 Score=124.72 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=74.7
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
+|+|+|+...|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+ +|++|||++|++|+|+..++||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999999 99999999999999999999994
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.66 E-value=2.9e-16 Score=123.57 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.7
Q ss_pred eeeEEEeCCCCE-EEEE-ecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009480 457 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 457 m~i~v~~~~g~~-~~~~-v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~ 530 (533)
|+|+|++..|+. +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6885 8999999999999999999999999999999999999999999999999999999974
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.66 E-value=1.9e-16 Score=123.97 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.2
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+||++.|++++++|++++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++++++++.+++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987764
No 19
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.8e-17 Score=137.79 Aligned_cols=77 Identities=95% Similarity=1.301 Sum_probs=75.4
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
|+|||+++.|++..+++.+++||..+|++|++.+|||+++|||+|.|++|+|+.||+||+|+..+||+|++|++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.64 E-value=5.4e-16 Score=120.14 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.1
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.|.|+|++..|+.+.++|++++||++||++|+++.|+|+++|+|+|.|+.|+|+.+|++|||.+|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 378999999999999999999999999999999999999999999999999999999999999999999864
No 21
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.64 E-value=5.7e-16 Score=122.28 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.7
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecce
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~ 153 (533)
.|+|+||+..|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||.+|++|+++..+++|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 489999999999999999999999999999999999999999999999999999 99999999999999999887774
No 22
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.2e-16 Score=110.76 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~ 146 (533)
|.|.||+++|+.+.++++|+|+|+.+|+++++++||||.+|||+|+|+++.|+.+-++|++.-||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999974
No 23
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.62 E-value=1.2e-15 Score=118.22 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=68.0
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
|+|++..|+++.+++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||++|++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876
No 24
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.62 E-value=1.3e-15 Score=117.90 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
.|.|+|++..|+.+.+++++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 378999999999999999999999999999999999999999999999999999999999999999999863
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.62 E-value=1e-15 Score=120.78 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.6
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|++.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998775
No 26
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.62 E-value=1.3e-15 Score=120.15 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.4
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+|++||+.++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988764
No 27
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.62 E-value=7.6e-16 Score=118.54 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.9
Q ss_pred EEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 80 ~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.||.++|++++++|++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999976
No 28
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.7e-16 Score=109.16 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~ 70 (533)
|.|-|++++|+.+.++++|.|+|+.+|++|++++||||.+|+|+|.|+++.|++|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 29
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.60 E-value=1.5e-15 Score=117.58 Aligned_cols=69 Identities=38% Similarity=0.721 Sum_probs=67.2
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEE
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
|||++..|+++++++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|+++|++|+..
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999974
No 30
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.60 E-value=5.7e-15 Score=119.19 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|+|++.+|+...++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+++||+++|++|++.+|++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999998
No 31
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=3.1e-15 Score=115.13 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.8
Q ss_pred EEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 460 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 460 ~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
.|+...|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999999999999999999999999999986
No 32
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=4.5e-15 Score=116.74 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=67.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|.+|++||
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999998
No 33
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.58 E-value=5.1e-15 Score=117.09 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.4
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCC--CCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998764
No 34
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.58 E-value=8.4e-15 Score=115.85 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCC--CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|||++|++|++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998864
No 35
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.57 E-value=1e-14 Score=113.73 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
|+|+|++..|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 36
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.55 E-value=1.6e-14 Score=112.14 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+.|+|++..|+ ..+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++||+++|++|+|++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 589999999999999999999999999999999999999999999999999999999986
No 37
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.55 E-value=1.1e-14 Score=115.68 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=70.8
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEE--EecCccccCCCccccccccccCceeEEEEe
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
+|+|+||+..|+.+.++|++++||++||++|++..|+|+++|+| +|.|+.|+|+.+|++|||.+|++|+++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 48999999999999999999999999999999999999999999 899999999999999999999999998863
No 38
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.54 E-value=1.3e-14 Score=113.14 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=69.4
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~ 71 (533)
|+|+|++++|+++++++++++||.++|++|++..|+|++.|+|+|+|+.|+|+++|++|++.+++++|++.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999975
No 39
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=1.7e-14 Score=111.47 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009480 462 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 462 ~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~ 530 (533)
++.+|+.+.++|++++||++||.+|++..|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999999864
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=1.6e-14 Score=114.78 Aligned_cols=73 Identities=33% Similarity=0.474 Sum_probs=70.5
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE--EEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L--~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+|+|+|+...|+.+.+++++++||++||.+|++..|+|+++|+| .|+|+.|+|+.+|++|||++|++|+|+++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 38899999999999999999999999999999999999999999 78999999999999999999999999998
No 41
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.52 E-value=1.7e-14 Score=111.71 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.4
Q ss_pred EEEEec-CCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCC-CccccccccccCceeEE
Q 009480 79 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 146 (533)
Q Consensus 79 i~vk~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~~L~~y~i~~~s~i~l~ 146 (533)
|+||+. +|+++.++|++++||+++|++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 42
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.52 E-value=2.9e-14 Score=110.18 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.9
Q ss_pred EecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
|+++|+.+.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+|++|++.++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999999999999999999999999999999999999999988753
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.51 E-value=4.6e-14 Score=109.29 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.0
Q ss_pred eEEEeC-CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 009480 459 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 526 (533)
Q Consensus 459 i~v~~~-~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~tl~l~ 526 (533)
|+|++. .|+++.+++++++||++||.+|++.+|+|+++|+|+|+|++|+|+ .+|++|||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 468888 899999999999999999999999999999999999999999987 68999999999999874
No 44
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.51 E-value=4e-14 Score=109.90 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~ 72 (533)
|.|+|++++|+ .++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999864
No 45
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.50 E-value=4.3e-14 Score=109.87 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=64.4
Q ss_pred CeEEEEEecCCcE--EEEEEcCCCcHHHHHHHHhhhhC--CCCCCeEEEecCccccCCCcccccc--ccccCceeEEE
Q 009480 76 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g~~--~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~~L~~y~--i~~~s~i~l~~ 147 (533)
++.++||+++++. +.+++++++||++||++|++..+ .|+++|+|+|+||.|+|+.+|++|. +.++.+|||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3789999999998 55556899999999999999874 5579999999999999999999996 99999999975
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=5e-14 Score=110.75 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=66.1
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
++|++++++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++|
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999988764
No 47
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.43 E-value=3.6e-13 Score=104.68 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
++|.|++. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46888887 88999999999999999999999999999999999999999999999999999999999864
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.43 E-value=4.1e-13 Score=104.40 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=64.1
Q ss_pred CeeeEEEeCCCCEEEE--EecCCCcHHHHHHHHhhhcC--CCCCcEEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 009480 456 GMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~--~v~~~~tV~~LK~~I~~~~g--ip~~~q~L~~~g~~L~d~~tL~~~~--I~~~~tl~l~~ 527 (533)
++.++|++.+++.+.+ ++.+++||++||++|++..+ .|+++|+|+|.|+.|+|+.||++|+ +.+|.||||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 4679999999998544 55899999999999999874 4579999999999999999999996 99999999975
No 49
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.42 E-value=3.4e-13 Score=104.98 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.8
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEe---cCccccCCCccccccccccCceeEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~~L~~y~i~~~s~i~l~ 146 (533)
|.|.|| +.|+.+.++|++++||++||++|++..|+|+++|+|+| .|+.|.|+.+|++|+|.+|+.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 467787 78899999999999999999999999999999999996 8999999999999999999999886
No 50
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.41 E-value=8e-13 Score=106.65 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=75.5
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+|++.+|+.+.++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|++.++.+||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999988775
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.41 E-value=4.4e-13 Score=104.17 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.2
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
|+|+||+. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899986 89999999999999999999999999999999999999999999999999999999998863
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.39 E-value=7.7e-13 Score=103.02 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=65.4
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEee---cCeeccCCccccccccccCCeEEEE
Q 009480 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 450 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~---~g~~l~d~~tL~~~~i~~~~~l~l~ 450 (533)
|+|.|| |.|+++++++++++||.+||++|++.+|||+++|+|.+ .|+.+.|+.+|++|++.+|+.++|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 467887 99999999999999999999999999999999999996 8999999999999999999999986
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.30 E-value=5.9e-12 Score=95.56 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=60.9
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 521 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~ 521 (533)
|+|+|++.. +.+.+++++++||++||.+|+..+|+|++.|+|+|+|+.|.|+.+|++|||.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 6899999999999999999999999999999999999999999999999999885
No 54
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.29 E-value=3.1e-12 Score=97.97 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.9
Q ss_pred CCchHHHHHHHhhhhc--CCC-CCCeEEEeCCeecCCCCccccccCCCCCEEEEEE
Q 009480 171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (533)
Q Consensus 171 ~~~tV~~lK~~i~~~~--gip-~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~ 223 (533)
.++||.+||++|+++. |+| +++|||+|+|+.|+|+++|++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4779999999999995 575 9999999999999999999999999999999974
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.29 E-value=8.7e-12 Score=97.16 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.7
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecC-CCCcccccCCC-CCCEEEEEE
Q 009480 463 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 527 (533)
Q Consensus 463 ~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~I~-~~~tl~l~~ 527 (533)
...|.+..++|++++||++||.+|++++|+|+++|+| |+|+.|. |+.||++||++ +|++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3557889999999999999999999999999999999 9999996 67899999999 889999865
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.29 E-value=7.1e-12 Score=97.64 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=61.9
Q ss_pred eEEEEc--CCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcc-CCCCccccccc-ccccceEEE
Q 009480 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~-d~~~l~~y~i~-~~sti~l~~ 71 (533)
.++|++ ..|++++++|.+++||.+||+||+++.|+|++.|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 467776 668999999999999999999999999999999999 9999985 67999999998 668998864
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.28 E-value=6.5e-12 Score=95.33 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.0
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccC
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s 141 (533)
|+|+||+.+ +.+.++|++++||++||++|+...|+|+++|+|+|+|+.|+|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 7899999999999999999999999999999999999999999999999999875
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.27 E-value=5.5e-12 Score=96.59 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=49.4
Q ss_pred CCCcHHHHHHHHhhhc--CCC-CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 475 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 475 ~~~tV~~LK~~I~~~~--gip-~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
.++||.+||++|+++. |+| +++|+|+|+|+.|+|++||++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 5789999999999995 575 9999999999999999999999999999999975
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=1.2e-11 Score=125.67 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhC---CCCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
|+|+||++.|+.+.++|++++||.+||++|+...| +|+++|+|+|+|++|+|+.+|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 78999999999999999999999999999999998 99999999999999999999999999999999998754
No 60
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.22 E-value=8.4e-12 Score=102.01 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=64.8
Q ss_pred CCeEEEEEecCCcEE-EEEEcCCCcHHHHHHHHhhh-----hCCC--CCCeEEEecCccccCCCcccccc------cccc
Q 009480 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~~L~~y~------i~~~ 140 (533)
+.+.|.++..+|..+ +..+++++||+++|++|++. +|+| +++|+|+|+|++|+|+.||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 346677888888654 77889999999999999944 4566 99999999999999999999999 6777
Q ss_pred CceeEEEEee
Q 009480 141 STLHLVLRLR 150 (533)
Q Consensus 141 s~i~l~~~~~ 150 (533)
+|+||+++++
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 8999998864
No 61
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.22 E-value=1.2e-11 Score=101.18 Aligned_cols=76 Identities=24% Similarity=0.325 Sum_probs=64.3
Q ss_pred ceeeeeeecccceE-EEeecCCchHHHHHHHhhhhc-----CCC--CCCeEEEeCCeecCCCCcccccc------CCCCC
Q 009480 152 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKES 217 (533)
Q Consensus 152 ~~~i~vk~~~g~~~-~i~v~~~~tV~~lK~~i~~~~-----gip--~~~q~L~~~G~~L~d~~tl~~y~------I~~~~ 217 (533)
.+.|.++..+|..+ +..+.+++||++||++|++.+ ++| +++|+|||+||+|+|+.||++|+ +....
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 35667777788655 467889999999999999555 455 99999999999999999999999 77779
Q ss_pred EEEEEEEecC
Q 009480 218 TLHLVLRLRG 227 (533)
Q Consensus 218 ~i~l~~~~~~ 227 (533)
|+|++++++.
T Consensus 84 TmHvvlr~~~ 93 (113)
T cd01814 84 TMHVVVQPPL 93 (113)
T ss_pred EEEEEecCCC
Confidence 9999998764
No 62
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=6.3e-11 Score=120.37 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcC---CCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
|+|+|++..|+++.++|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+++|++|||+++++|++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 78999999999999999999999999999999998 9999999999999999999999999999999998864
No 63
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.11 E-value=1.1e-10 Score=92.18 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=57.0
Q ss_pred EEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccC-CCccccccccccCceeEEEEe
Q 009480 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d-~~~L~~y~i~~~s~i~l~~~~ 149 (533)
...++|++++||.+||.+|++++++||++|+|+|+|+.|.| .+||++|||..+|+|+|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 46788999999999999999999999999999999999965 689999999999999998643
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.10 E-value=1.5e-10 Score=91.54 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=57.7
Q ss_pred eEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCC-CCccccccCCCCCEEEEEEEec
Q 009480 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 226 (533)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~tl~~y~I~~~~~i~l~~~~~ 226 (533)
..+++|++++||.+||.+|.+++++|++.|+|+|.|+.|.| .+||++|||.++|+|++.++.+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 45788999999999999999999999999999999999965 5899999999999999997643
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.06 E-value=5.5e-10 Score=85.95 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.0
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
|+..+|+.+.+.+++++||.+||.+|+..+|+|++.|+|.|+|+.|+|+.+|++|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5566788999999999999999999999999999999999999999999999999999999999864
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.06 E-value=5.5e-10 Score=86.89 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
|+|+|+..+|+.+.+.|.+++++..|+..+++..|+|+ +.++|.|+|++|+++.|++++|+++|++|+|.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67899999999999999999999999999999999999 999999999999999999999999999999864
No 67
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.04 E-value=5.2e-10 Score=86.12 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.3
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
|+..+|+.+.+++++++||.+||++|+...|+|++.|+|+|+|+.|+|..+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998864
No 68
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.04 E-value=2.8e-10 Score=109.52 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.9
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhC--CCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
|.|+||++.+..|+++|.|++||.++|++|+...| .|+.+|+|||+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999988654
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.02 E-value=3.7e-10 Score=114.54 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.7
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEec
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~ 226 (533)
.+.|+||+.+. .+.+.|..+.||.+||++|...+++|+++++|||+||+|+|+.||..|||++|.||||+.+..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 36789998877 889999999999999999999999999999999999999999999999999999999998754
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.02 E-value=3.2e-10 Score=114.97 Aligned_cols=74 Identities=36% Similarity=0.560 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
..+.|+||+.++ .+.+.|..+.||.+||+.|....++|+++++|||+||+|+|+.||..|||.+|.||||+.+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 347899999988 89999999999999999999999999999999999999999999999999999999999865
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.93 E-value=2.7e-09 Score=83.02 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.8
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCC-CCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
|+|+|+..+|+.+.+.|.+++++..|+++.+++.|+|+ +..+|+|+|+.|+++.|+++|++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999863
No 72
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.93 E-value=1.6e-09 Score=104.44 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.6
Q ss_pred eeeeeeecccceEEEeecCCchHHHHHHHhhhhcC--CCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEec
Q 009480 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (533)
Q Consensus 153 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~ 226 (533)
|.|+||++.+.+|++++.|++||.++|++|+...| +|+++|+|||+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 67899999999999999999999999999999988 999999999999999999999999999999998888755
No 73
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.91 E-value=5.1e-09 Score=81.30 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.1
Q ss_pred eEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEec
Q 009480 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (533)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~ 74 (533)
++++.+..|+++++++.++++|..+|.+|..+.|+|++.|++.+.|+.|+|+.++.+|+|..++++++..+.+
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999987653
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.87 E-value=1.7e-08 Score=78.30 Aligned_cols=74 Identities=84% Similarity=1.159 Sum_probs=70.2
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+++.+..|+...+++.+..+|..+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..++++++..+++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56777899999999999999999999999999999999999999999999999999999999999999998764
No 75
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.82 E-value=1.1e-08 Score=83.32 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=62.0
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCC-------CCCCEEEEEEe
Q 009480 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I-------~~~~tl~l~~r 528 (533)
|.+|++....+ ++.+++.++.||.+||.+|+.....||++|+|+.++..|+|++||+|||+ +..+++-|.+|
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 34555543333 56678999999999999999999999999999988888999999999999 77899999888
Q ss_pred c
Q 009480 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 5
No 76
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.81 E-value=2.4e-08 Score=79.88 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=56.6
Q ss_pred eeEEEeC-CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCe-----ec-CCCCcccccCCCCCCEEEEE
Q 009480 458 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK-----QL-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~~-~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L-~~~g~-----~L-~d~~tL~~~~I~~~~tl~l~ 526 (533)
.++|... +......+++++.||++||.+++..+|+||+.|+| ++.|+ .| +|+++|++||+++|++||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 3455542 33345556999999999999999999999999999 47887 56 57789999999999999986
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.69 E-value=7.3e-08 Score=77.06 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.8
Q ss_pred EEEEEecC-CcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE-ecCc-----cc-cCCCccccccccccCceeEEE
Q 009480 78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 78 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~-----~L-~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.|+|+... .......++++.||.+||++++...|+||..|+|. |.|+ .| +|..+|.+|++.+|++||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45555432 33455669999999999999999999999999995 8887 46 678899999999999999964
No 78
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.64 E-value=1.4e-07 Score=76.16 Aligned_cols=69 Identities=28% Similarity=0.565 Sum_probs=55.4
Q ss_pred eeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc----Ce---ec-CCCCcccccCCCCCCEEEEE
Q 009480 458 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~~~g--~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~----g~---~L-~d~~tL~~~~I~~~~tl~l~ 526 (533)
.|+|..... ......++++.||++||.+|+..+|+|++.|+|.+. +. .+ +|+++|.+||+++|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 456665433 578889999999999999999999999999999876 12 34 36789999999999999985
No 79
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.57 E-value=2.2e-07 Score=69.37 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=63.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecC-----ccccCCCccccccccccCceeEEEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-----~~L~d~~~L~~y~i~~~s~i~l~~~ 148 (533)
++|+|+.+++..+++.|+|..+|..+|++|....|++- .|+|.|+- ..|.+.++|++|||..+..|.|+..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 47999999999999999999999999999999999988 99999972 4578999999999988877777654
No 80
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.54 E-value=3.4e-07 Score=68.35 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=64.9
Q ss_pred eeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeC---C--eecCCCCccccccCCCCCEEEEEEEec
Q 009480 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLR 226 (533)
Q Consensus 153 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G--~~L~d~~tl~~y~I~~~~~i~l~~~~~ 226 (533)
++|+|+..++..+++.|+|..+|..+|++|...+|++- +|||.|. | +.|.+..+|++|||..+-.|.++-+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 47899999999999999999999999999999999998 9999997 2 457899999999999998888776543
No 81
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.53 E-value=1.9e-07 Score=76.04 Aligned_cols=72 Identities=32% Similarity=0.474 Sum_probs=62.4
Q ss_pred CeEEEEcCCCc-EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccc-------cccccceEEEE
Q 009480 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i-------~~~sti~l~~~ 72 (533)
|++|+....-| ++.++++++.||.++|++|+.-...||+.|+|+-.+..|+|++||++|++ +.-.++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999987665 67799999999999999999999999999999977788999999999999 44555555554
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.48 E-value=5.8e-07 Score=75.32 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=56.0
Q ss_pred eeeeeeecccc-eEEEeecCCchHHHHHHHhhhhcC-------CCCCCeEEEeCCeecCCCCccccccCCCCC------E
Q 009480 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 218 (533)
Q Consensus 153 ~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~tl~~y~I~~~~------~ 218 (533)
+.+.++..+|+ ..++..++++||++||+.|...|. ..++..||||.||.|+|+.+|+++++..+. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 45566667888 778999999999999999987652 124679999999999999999999998776 6
Q ss_pred EEEEEEec
Q 009480 219 LHLVLRLR 226 (533)
Q Consensus 219 i~l~~~~~ 226 (533)
+||+++++
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 88888765
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.47 E-value=6.8e-07 Score=74.90 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.3
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCcHHHHHHHHhhhhC-------CCCCCeEEEecCccccCCCccccccccccC------
Q 009480 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (533)
Q Consensus 76 ~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~~L~~y~i~~~s------ 141 (533)
.+.|.++..+|+ ...+.+++++||++||+.|...+. ..++..||+|.||.|+|+.+|++|.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 356667778898 789999999999999999997652 134679999999999999999999987665
Q ss_pred ceeEEEEee
Q 009480 142 TLHLVLRLR 150 (533)
Q Consensus 142 ~i~l~~~~~ 150 (533)
++||++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 677777654
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.47 E-value=2.9e-07 Score=91.53 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.6
Q ss_pred eEEEEEecCCcEE---EEEEcCCCcHHHHHHHHhhhhCC-CCCCeEEEec---C----ccccCCCccccccccccCceeE
Q 009480 77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 77 m~i~vk~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~~~---g----~~L~d~~~L~~y~i~~~s~i~l 145 (533)
|+|+|+..+|+.+ ++++++++||++||++|+++.++ ++++|+|.+. | +.|+|+.+|++||+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6789998889887 79999999999999999999986 8999999983 4 4789999999999999998666
No 85
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.46 E-value=7.2e-07 Score=72.02 Aligned_cols=72 Identities=26% Similarity=0.535 Sum_probs=56.8
Q ss_pred eEEEEEecCC--cEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec-C------ccc-cCCCccccccccccCceeEE
Q 009480 77 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 77 m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g------~~L-~d~~~L~~y~i~~~s~i~l~ 146 (533)
+.|+|..... ......++++.||.+||.+++...|+|++.|+|.+. . ..+ +|..+|.+||+.+|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3466655444 478899999999999999999999999999999876 1 223 56899999999999999986
Q ss_pred EE
Q 009480 147 LR 148 (533)
Q Consensus 147 ~~ 148 (533)
-.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 43
No 86
>PLN02560 enoyl-CoA reductase
Probab=98.46 E-value=4e-07 Score=90.55 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.0
Q ss_pred eeeEEEeCCCCEE---EEEecCCCcHHHHHHHHhhhcCC-CCCcEEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 009480 457 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 457 m~i~v~~~~g~~~---~~~v~~~~tV~~LK~~I~~~~gi-p~~~q~L~~~---g----~~L~d~~tL~~~~I~~~~tl~l 525 (533)
|+|.|+..+|+.+ ++++++++||++||.+|++..++ ++++|||.+. | +.|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788888888886 79999999999999999999987 8999999973 3 3789999999999999999876
Q ss_pred E
Q 009480 526 V 526 (533)
Q Consensus 526 ~ 526 (533)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 87
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.9e-06 Score=68.77 Aligned_cols=78 Identities=18% Similarity=0.460 Sum_probs=72.8
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
-+++.|+..+|....+.|..++....|+..-+++.|++++..|++|+|+.+.+.+|-++.+.++|+.|.+.....||+
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 345666777888889999999999999999999999999999999999999999999999999999999999999995
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.6e-07 Score=99.13 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=69.8
Q ss_pred eeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEecC
Q 009480 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (533)
Q Consensus 154 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~~ 227 (533)
.|.||+++.++.++.+...+||.++|..|..+.+|+.+.||+||+|++|.|++++.+|+| +|.+|||+-+++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 378999999999999999999999999999999999999999999999999999999999 9999999998654
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.1e-07 Score=98.81 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=69.3
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
.|+||+++.++.++.+...+||.+||+.|.++.+|+.+.|||||.|++|.|++++.+|+| +|-+|||+-+++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 488999999999999999999999999999999999999999999999999999999999 999999998864
No 90
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.31 E-value=1.1e-06 Score=69.22 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=45.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g---~~L--~d~~tL~~~~I~~~~tl~l~ 526 (533)
..|-|.|+..+| .+.+++++++|+.+|+++|++..++|+..|.|+.+. ..+ .++.||+++|++.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 467788899888 578899999999999999999999999999987542 245 36789999999999999875
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.19 E-value=3.9e-06 Score=65.97 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=47.7
Q ss_pred cCCCcHHHHHHHHhhhcC-CCCCcEEEE--EcCeecCCCCcccccCCCCCCEEEEE
Q 009480 474 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 474 ~~~~tV~~LK~~I~~~~g-ip~~~q~L~--~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
+++.||++||..|+...+ .|++.|+|. +.|+.|.|+.+|.+||+.+|++|++.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEe
Confidence 588999999999999876 589999996 78999999999999999999999873
No 92
>KOG4261 consensus Talin [Cytoskeleton]
Probab=98.18 E-value=2.1e-07 Score=98.25 Aligned_cols=172 Identities=24% Similarity=0.348 Sum_probs=128.7
Q ss_pred CceEEEEeccCccHHHHHHHhccccC---CCCCceeEEe------cceEcCCCCcccccccccCCeEEEEEEecCCeeEE
Q 009480 314 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~I~~~~~---ip~~~q~L~~------~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~ 384 (533)
+-+-||.++|+++|.|.++.|++++. .-|..+.|+. .|-||++++||.+|-+.+++++.+..+.+ ...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cce
Confidence 55668999999999999999999875 2366777776 59999999999999999999999986555 578
Q ss_pred EEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEeecCeeccCCccccccccccCCeEEEEEEecCCeeeEEEeC
Q 009480 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL 464 (533)
Q Consensus 385 vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~tL~~~~i~~~~~l~l~~~~~~~m~i~v~~~ 464 (533)
|+|++|..-++.+.++.+|.+|.-.|+.+.||..+. +|++..+....=-.....+..+..++
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnye-----------------eyslvre~~~~~~~~~tgtl~~~~~~- 150 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYE-----------------EYSLVREDIEEQNEEGTGTLNLKRKL- 150 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchh-----------------hhhhhHHHHHHhcCCCCceEEeehhH-
Confidence 999999999999999999999999999999987764 33332211100000000111111111
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l 525 (533)
+......+.||+++......+| |+..+||.+.||....|+++
T Consensus 151 --------m~~~~kme~Lkkkl~td~el~w-----------ld~~rtlreqgide~et~ll 192 (1003)
T KOG4261|consen 151 --------MRKERKMEKLRKKLHTDDELNW-----------LDHSRTLREQGIDEEETLLL 192 (1003)
T ss_pred --------HHhhhhhHHHHhhcccchhhhh-----------HHHhHHHHhcCccHHHHHHH
Confidence 1222378899999998888888 88889999999988776654
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.14 E-value=4.6e-06 Score=65.59 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.5
Q ss_pred cCCCcHHHHHHHHhhhhC-CCCCCeEEE--ecCccccCCCccccccccccCceeE
Q 009480 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~L~d~~~L~~y~i~~~s~i~l 145 (533)
+++.||.+||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 478899999999998875 589999996 7899999999999999999998775
No 94
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.04 E-value=8e-06 Score=64.33 Aligned_cols=71 Identities=28% Similarity=0.422 Sum_probs=43.5
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec---Cccc--cCCCccccccccccCceeEE
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g~~L--~d~~~L~~y~i~~~s~i~l~ 146 (533)
+.|-|.|++.+|. +.+++++++|+.+|+++|++..++|.+.|.|+.+ ...+ .++.+|+++||+.|+.++|.
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3577788877754 6789999999999999999999999999998744 2345 46789999999999998874
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.02 E-value=1.4e-05 Score=59.24 Aligned_cols=64 Identities=45% Similarity=0.670 Sum_probs=59.9
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEE
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
.+|...++.+.+..|++++|++|+.+.|++++.|.|+++|..+.+...+.+|++.+++.+++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3688889999999999999999999999999999999999999999988999999999999874
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.98 E-value=3.2e-05 Score=57.20 Aligned_cols=63 Identities=46% Similarity=0.697 Sum_probs=58.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
.|....+.+.++.|+.++|..|+.+.|++++.+.|.++|..+.+...+.++++.++++|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 677888999999999999999999999999999999999999999888999999999999864
No 97
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.1e-05 Score=82.09 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=66.3
Q ss_pred eeEEEEecCCcEEEEE-ecCCCcHHHHHHHhhcccCCCCccceEeecCeeccCCccccccccccCCeEEEEEE
Q 009480 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~-v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~tL~~~~i~~~~~l~l~~~ 452 (533)
.+|.|| |.|+.+.++ ++.++|+..+|+++...|||||++|+++..|+.+.|+..+.+.+|++|.+++|+-.
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 457787 999999988 99999999999999999999999999999999999999999999999999999843
No 98
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5.6e-06 Score=59.89 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=62.4
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009480 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
++.+...-|+...+++.+++||.++|..|++.+|..++...|--|+..+.|.-+|++|.|.+|..+.|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 344556678899999999999999999999999999999999999999999999999999999888764
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.8e-06 Score=59.13 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=61.5
Q ss_pred eEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEeecCeeccCCccccccccccCCeEEEE
Q 009480 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (533)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~tL~~~~i~~~~~l~l~ 450 (533)
++.+.+.-|+...+++++++||+|+|+.|..++|-.+++..|...+..++|..+|++|.+..|..+.|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455667779999999999999999999999999999999888877889999999999999999887663
No 100
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.76 E-value=5.9e-05 Score=56.57 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=49.1
Q ss_pred EEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEE
Q 009480 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 309 v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
|..+++++.++.+.|++|+.++=+..|.++|++++++.|.|+++.|+-+.+++--|+++|+.|.|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 34678999999999999999999999999999999999999999999999999999999999876
No 101
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00022 Score=57.10 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=68.4
Q ss_pred eeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009480 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+++.|+..++.++.|.|+.+.....|....+++.|++.+..||.|+|+++.+.+|.++.++.+||.|.++....+|
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4555777788899999999999999999999999999999999999999999999999999999999887654443
No 102
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.70 E-value=4.1e-05 Score=60.15 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=44.7
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cC-eecCCCCcccccCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 518 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g-~~L~d~~tL~~~~I~ 518 (533)
++.++..++.||.+||.+++....-|+++|+|+. +. ..|+|++||+|||..
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4667899999999999999999999999999987 43 567899999999653
No 103
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.4e-05 Score=71.28 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=62.0
Q ss_pred eEEEEEec---CCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEE-EEe
Q 009480 77 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (533)
Q Consensus 77 m~i~vk~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~-~~~ 149 (533)
|.++|+.. ....++++|+.+.+|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-|.+|.+ +++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 34455433 23458899999999999999999999999999999999999999999999999888888877 444
No 104
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00011 Score=70.56 Aligned_cols=70 Identities=31% Similarity=0.604 Sum_probs=60.0
Q ss_pred eeeEEEeC-C--CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009480 457 MQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~-~--g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
|.++|+.. + ...+.++|+.+..|.+||+.++.+.|+|+++.+++|.|++|.|+.|+..|.+...+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 34555532 2 2457788999999999999999999999999999999999999999999999888888866
No 105
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.52 E-value=0.00048 Score=60.99 Aligned_cols=76 Identities=30% Similarity=0.492 Sum_probs=60.4
Q ss_pred eeeEEEeCCC----CEEEEEecCCCcHHHHHHHHhhhcCCCCCcE-EEEEc-Ceec--CCCCcccccCCCC----CCEEE
Q 009480 457 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQK----ESTLH 524 (533)
Q Consensus 457 m~i~v~~~~g----~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q-~L~~~-g~~L--~d~~tL~~~~I~~----~~tl~ 524 (533)
|+|+|.+.+| .+..+.++++.||.+|+..|.+..++|...| .|++. ++.| .++..++.+.-.+ --+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5799999999 5888899999999999999999999999984 56553 5555 3455566654433 34899
Q ss_pred EEEecCCC
Q 009480 525 LVLRLRGG 532 (533)
Q Consensus 525 l~~rl~GG 532 (533)
|.+|++||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999999
No 106
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00017 Score=56.07 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=72.2
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
.+.+.|...+|....+++..+.+...|....+.+.|-..+..|+.|+|+.++.++|.+|++.++++.|.++....||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 455666678889999999999999999999999999999999999999999999999999999999999999999984
No 107
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.32 E-value=0.0003 Score=55.39 Aligned_cols=62 Identities=29% Similarity=0.435 Sum_probs=53.6
Q ss_pred CeEEEEcCCC-cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEE-cc-EEccCCCCccccccc
Q 009480 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 62 (533)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~-~g-~~L~d~~~l~~y~i~ 62 (533)
|++|++.-.- .++.+..++|.||-++|.++..-..=|++.|+|+. .- +.|+|+++|++++..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 6889988655 46779999999999999999999999999999988 33 568999999999753
No 108
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00092 Score=68.31 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=65.5
Q ss_pred eeeeeecccceEEEe-ecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEec
Q 009480 154 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (533)
Q Consensus 154 ~i~vk~~~g~~~~i~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~ 226 (533)
.|.|+ ..|+.++++ ++.++|+..+|+++....|+||++|+++..|+.+.|+-......|++|.+++|+.+..
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 35554 678999988 9999999999999999999999999999999999999999999999999999998643
No 109
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.81 E-value=0.0044 Score=46.50 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.1
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009480 463 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 463 ~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l 525 (533)
..+++...+.+.|+.++.++-+..+.++|+++++-.|.|+++.|+-+-++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 456788999999999999999999999999999999999999999999999999999999875
No 110
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.71 E-value=0.0047 Score=48.66 Aligned_cols=68 Identities=21% Similarity=0.421 Sum_probs=46.8
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcE----EEE---EcCeecCCCCcccccCCCCCCEEEE
Q 009480 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ----RLI---FAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q----~L~---~~g~~L~d~~tL~~~~I~~~~tl~l 525 (533)
.|.|...+|+.+.+.++.+.+|++|...|.+..+.+.... .|. -+|..|.++.||+++||.+|+.|.|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 3455554568899999999999999999999888744332 243 4688999999999999999999986
No 111
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.46 E-value=0.008 Score=47.36 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=48.8
Q ss_pred eeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCC------CeeEE-ecCccccCCccccccccCCCceEEE
Q 009480 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 297 (533)
Q Consensus 230 ~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~------~q~L~-~~g~~L~d~~tl~~~~i~~~~ti~l 297 (533)
.|.|...+|+.+.+.+..+-+|.++...+.+..+.+.. ...|. .+|..|++++||++++|.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45555555789999999999999999999998886332 25666 6888999999999999999999976
No 112
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.36 E-value=0.0077 Score=49.26 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=43.8
Q ss_pred EEEEecC-CcEEEEEEc--CCCcHHHHHHHHhhhhC--CCCCCeEEEecCccccCCCccccc
Q 009480 79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (533)
Q Consensus 79 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~~L~~y 135 (533)
|+|+..+ -..+.+++. .+.||..||..|.+..+ ..-..++|+|+|+.|.|+..|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4555544 234677777 78999999999999883 344668999999999998777654
No 113
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.32 E-value=0.031 Score=44.28 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=60.6
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEE--EcCeecCCC--CcccccCCCCCCEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~~~I~~~~tl~l~ 526 (533)
....|-|+..+|+...-.+.+++||++|...|......+... +.|. |-.+.+.++ .||+|.|+.+.++|.|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 345788899999999999999999999999999998877765 7775 456677643 69999999999999874
No 114
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.24 E-value=0.018 Score=51.10 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=54.8
Q ss_pred eEEEEEecCC----cEEEEEEcCCCcHHHHHHHHhhhhCCCCCCe-EEEec-Cccc--cCCCccccccccccC----cee
Q 009480 77 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKES----TLH 144 (533)
Q Consensus 77 m~i~vk~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~-g~~L--~d~~~L~~y~i~~~s----~i~ 144 (533)
|+|+|+++.| .++.+.++++.||.+|+..|....++|+..| .|.+. |+.| .++..++++.-.+.+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5799999999 5899999999999999999999999998885 45553 5565 455556665443332 455
Q ss_pred EEEEeec
Q 009480 145 LVLRLRG 151 (533)
Q Consensus 145 l~~~~~~ 151 (533)
+..++.|
T Consensus 81 l~~rl~G 87 (162)
T PF13019_consen 81 LSLRLRG 87 (162)
T ss_pred EEEeccC
Confidence 5555544
No 115
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.13 E-value=0.035 Score=43.94 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=59.1
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCC-eEEE--eCCeecCCC--CccccccCCCCCEEEEE
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~G~~L~d~--~tl~~y~I~~~~~i~l~ 222 (533)
...|.|+.++|+.+.-...+++||.+|.+.+......+... ..|+ |-.+.+.++ .||++.|+.++++|++-
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 45778889999999999999999999999999887766654 7776 556777544 69999999999999864
No 116
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.0089 Score=54.59 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=57.0
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeE
Q 009480 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l 145 (533)
.+++.+.+.+...+||.++|.++++..|+.+..|+++|+|+.|-|...|..|+|..|+...+
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 35778999999999999999999999999999999999999999999999999999975554
No 117
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.027 Score=44.11 Aligned_cols=69 Identities=14% Similarity=0.366 Sum_probs=62.7
Q ss_pred eeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEE
Q 009480 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l 297 (533)
++..|...+|.++.+.++...+...|-.....+.|=..+..|+.|+|+.++-++|..++++.+++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 455677788999999999999999999999999998889999999999999999999999999988743
No 118
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.75 E-value=0.02 Score=46.82 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=38.9
Q ss_pred ceEEEeec--CCchHHHHHHHhhhhcC--CCCCCeEEEeCCeecCCCCccccc
Q 009480 163 KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 211 (533)
Q Consensus 163 ~~~~i~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tl~~y 211 (533)
..+++++. ...||..||+.|.+..+ .....+||||+|+.|.|...|+.-
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 34566666 78899999999999873 345679999999999998777653
No 119
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.018 Score=52.64 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=57.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+++.+-+.+..-+|+.++|.++.+..|+.+..|+|+|.|..|.|...|.+|+|+.|..-.+-++
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4556788889999999999999999999999999999999999999999999999976665554
No 120
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.65 E-value=0.063 Score=42.29 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.4
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEE--eCCeecCC---CCccccccCCCCCEEEE
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tl~~y~I~~~~~i~l 221 (533)
...|.|+.++|+.+....++++||.+|.+.+....+.+.....|+ |-.+.+.+ +.||.+.|+.+++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 456788899999999999999999999999976666666667775 55677754 47999999999998865
No 121
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.54 E-value=0.086 Score=41.54 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=58.6
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~I~~~~tl~l~ 526 (533)
...|-|+..+|+...-....++||++|.+.|....+.+...+.|. |..+.+.+ +.||.+.|+...++|.|.
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 456888999999999999999999999999977777777778885 45666753 479999999999888763
No 122
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.20 E-value=0.15 Score=39.82 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=52.9
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 525 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~I~~~~tl~l 525 (533)
...|.|+..+|+...-....++||++|..-|.....- ...+.|. |-.+.+.+ +.||.+.|+.+ +.+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 3468889999999999999999999999999876543 5566775 44567754 67999999994 54444
No 123
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.10 E-value=0.097 Score=41.07 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=51.5
Q ss_pred EEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEe------cceEcCCCCcccccccccCCeEEE
Q 009480 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF------AGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 309 v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~-q~L~~------~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
|..++|...++.+++++|+.++-++|+++.|+.-.+ ..|.| ...+|+.+++|.++...++....+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTL 72 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEE
Confidence 456889999999999999999999999999995444 44777 258999999999998773443333
No 124
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.95 E-value=0.16 Score=39.97 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=54.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCC-CCCcEEEE--EcCeecCC-CCcccccCCCCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES 521 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gi-p~~~q~L~--~~g~~L~d-~~tL~~~~I~~~~ 521 (533)
+...|-|+..+|+.....+..++||++|..-|.+..+- ....+.|. |-.+.|.| +.||.|.|+.+..
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 35678899999999999999999999999999987643 23567775 66788864 6799999998644
No 125
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.89 E-value=0.11 Score=39.29 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=54.8
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccC--CCC---CceeEEecceEcCCCCcccccccccCCeEEE
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~--ip~---~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
+-.+.++|.++.+.+....+|..+-....+-+. +++ ++-+.+-+++.|++++.|.+|+|.+||.|.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 444679999999999999999999888876444 333 2345666899999999999999999999875
No 126
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.87 E-value=0.15 Score=40.01 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=54.9
Q ss_pred eeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEE--eCCeecCC---CCccccccCCCCCEEEE
Q 009480 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (533)
Q Consensus 153 ~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tl~~y~I~~~~~i~l 221 (533)
..|.|+.++|+.+.-..+.++|+.++.+.+....+-+ ....|+ |-.|.+.+ +.||.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4678888999999999999999999999998765433 446666 55787853 48999999999998865
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.68 E-value=0.18 Score=39.29 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=51.6
Q ss_pred CeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe--ecCeecc---CCccccccccccCCeEEE
Q 009480 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 449 (533)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l~---d~~tL~~~~i~~~~~l~l 449 (533)
...|.|+..+|+.+.-..+.++|+++|..-|.....- ...-.|. |..+.+. .+.||.+.|+. ++++.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 3468899999999999999999999999999876543 2222344 6777764 48899999998 455444
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.68 E-value=0.2 Score=48.79 Aligned_cols=106 Identities=17% Similarity=0.345 Sum_probs=74.3
Q ss_pred EEeccCccHHHHHHHhccccCCCCCceeEEec------ceEcCCCCcccccccccCCeEEEEEEec--------------
Q 009480 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLR-------------- 378 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~------g~~L~~~~tl~~y~i~~~~~l~l~~~~~-------------- 378 (533)
+.|+..++|.++-..|+++.|.|++..-++|- =..++...|+....+.+||+|.+.....
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 55799999999999999999999998888883 2557899999999999999999986442
Q ss_pred ------CCeeEEEEec---CCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe
Q 009480 379 ------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (533)
Q Consensus 379 ------~~~~i~vk~~---~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~ 424 (533)
..+.|.++.. .+..+++.++..+|-.+|-+.|.+++++.|..-++.
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1144555442 235789999999999999999999999999877766
No 129
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.66 E-value=0.16 Score=39.92 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=53.6
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCC-CCCeEEE--eCCeecCC-CCccccccCCCCCEE
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~G~~L~d-~~tl~~y~I~~~~~i 219 (533)
...|.|+.++|+.+....+.++||.+|.+-+....+-+ .....|. |-.+.|.| +.||.+.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 35678889999999999999999999999998865432 3456675 56787854 789999999975554
No 130
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.59 E-value=0.24 Score=38.93 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=55.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~I~~~~tl~l~ 526 (533)
..|.|+..+|....-....++|++++.+-|....+-+ ....|. |-.+.+.+ +.||.+.|+.+.++|.|.
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4578889999999899999999999999999765543 456664 45667753 479999999999998874
No 131
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.38 E-value=0.37 Score=38.00 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=60.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC---CCCcccccCCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~I~~~~tl~l~~r 528 (533)
+.-+|.|+..+|+...-....++++++|-.-|.+ .|.+++.+.|+ |--+.+. .+.||.+.|+.+.++|.|.-|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 4567889999999999999999999999999999 57888888886 3445553 357999999999999988654
No 132
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.34 E-value=0.075 Score=49.96 Aligned_cols=70 Identities=27% Similarity=0.344 Sum_probs=50.1
Q ss_pred eeeEEEeCCCC-E-EEEEecCCCcHHHHHHHHhhh-cCCCCCcEEEE----EcCeecCCCCcccccCCCCCCEEEEE
Q 009480 457 MQIFVKTLTGK-T-ITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~~g~-~-~~~~v~~~~tV~~LK~~I~~~-~gip~~~q~L~----~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
|.|.+...++. . .....+..+|+.|++.++..+ ..+-+..+|+. -+|++|-|+++|++||..+|++|++.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 45666554442 2 234567889999999666655 46777555543 47999999999999999999887753
No 133
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.20 E-value=0.22 Score=37.69 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCC-----ccceEeecCeeccCCccccccccccCCeEEE
Q 009480 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~-----~~q~l~~~g~~l~d~~tL~~~~i~~~~~l~l 449 (533)
+++-.+.|+|.++.+.++...++..+-..+.+-+.+.. +.-+..-++..|.++..|++|+|.+|+.+.+
T Consensus 7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45667899999999999999999999888887665443 2233445778899999999999999998765
No 134
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.17 E-value=0.38 Score=37.84 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC---CCCcccccCCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~I~~~~tl~l~~r 528 (533)
+..+|-++..+|+...-....++++++|-.-|... |.+++..+|. |--+.+. .+.||.|.|+....+|.|--|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence 34678889999998889999999999999999885 7888888885 4455664 356999999999999987543
No 135
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.97 E-value=0.35 Score=38.53 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=56.5
Q ss_pred cceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeC--CeecC--------CCCccccccCCCCCEEE
Q 009480 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLH 220 (533)
Q Consensus 151 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--G~~L~--------d~~tl~~y~I~~~~~i~ 220 (533)
+...|.++.++|+.+.-..+.++||++|..-+.. .+..+..+.|+++ -+.+. .+.||.+.|+.+..++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3467888899999999999999999999999964 4445578888865 36775 36799999999888876
Q ss_pred E
Q 009480 221 L 221 (533)
Q Consensus 221 l 221 (533)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 136
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.92 E-value=0.35 Score=37.83 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=43.4
Q ss_pred eEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEE
Q 009480 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
.+.-.++-...+..||..++.+.++..+.+.+...+..|+++++|.+.|++-...+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 45566778889999999999999999999999999988999999999999999988765
No 137
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.71 E-value=0.35 Score=38.56 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=56.8
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc--eEcC--------CCCcccccccccCCeEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g--~~L~--------~~~tl~~y~i~~~~~l~l~ 374 (533)
..|-++.++|..+.-.++.++|+++|.+-|.. .+-.|..+.|+.+= +.++ .+.||++-|+.+..+|.+.
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 35778899999999999999999999999975 45566789998854 5664 4789999999988887764
No 138
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.52 E-value=0.5 Score=44.82 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCcHHHHHHHHhhhhCCCCC---CeEEE--ecCc---cccCCCccccccccccCceeEEEEe------e--
Q 009480 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 150 (533)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~--~~g~---~L~d~~~L~~y~i~~~s~i~l~~~~------~-- 150 (533)
+.+.+-|+.+.||.+|.++++.+.+++.. ..++. ++++ .+..+.++.+. .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35888999999999999999999998765 34443 4554 45666666654 222222222111 1
Q ss_pred --cceeeeeeec-------ccceEEEeecCCchHHHHHHHhhhhcCCCC
Q 009480 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (533)
Q Consensus 151 --~~~~i~vk~~-------~g~~~~i~v~~~~tV~~lK~~i~~~~gip~ 190 (533)
+.+.|.|--. .|-.|.+.|.++.|..++|++|+++.|+|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233333222 377888999999999999999999999984
No 139
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.32 E-value=0.52 Score=44.71 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=58.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhcccCCCCc-cceEe----ecCe---eccCCccccccccccCCeEEEEEEe------c--
Q 009480 391 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 454 (533)
Q Consensus 391 ~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~-~q~l~----~~g~---~l~d~~tL~~~~i~~~~~l~l~~~~------~-- 454 (533)
+.+.+.++.+.||.||...++.+.+++.+ .+++. ++++ .++.+.++.+. ....++++-.-. .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999998776 33333 3443 46777878777 222234332111 0
Q ss_pred --CCeeeEEEeC-------CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcE
Q 009480 455 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 497 (533)
Q Consensus 455 --~~m~i~v~~~-------~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q 497 (533)
..+-|.|... -|-.+.+.|.++++++++|.+|++++|+|-..+
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF 163 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEF 163 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhh
Confidence 1233545421 155788899999999999999999999986544
No 140
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.88 E-value=0.66 Score=36.58 Aligned_cols=69 Identities=16% Similarity=0.326 Sum_probs=58.2
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE--ecCcccc---CCCccccccccccCceeEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~~L~~y~i~~~s~i~l~ 146 (533)
-+|.||.++|+...-....++++.+|-.-+.. .|.+++...|+ |=.|.+. .+.||.+.|+.+.+++.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46889999999999999999999999999988 57788888888 4456663 3579999999998888774
No 141
>PRK06437 hypothetical protein; Provisional
Probab=92.86 E-value=0.92 Score=34.35 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=47.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.++...++++...||++|-+. .|+++....+..+|..+. .++-+++|+.|.+.--..||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 345577888889999998766 488888888899999997 45556679999988877776
No 142
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.66 E-value=0.8 Score=36.03 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=57.2
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEE--eCCeecC---CCCccccccCCCCCEEEE
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~---d~~tl~~y~I~~~~~i~l 221 (533)
...|.++.++|+.+.-....++++.+|-.-+... |.+....+|+ |=-+.+. .+.||.+.|+.+..+|.|
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 4577888899999999999999999999999875 7777788887 4467664 357999999999988865
No 143
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.37 Score=44.14 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=48.9
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcC-----eecC-CCCcccccCCCCCCEEEEE
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAG-----KQLE-DGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L-~~~g-----~~L~-d~~tL~~~~I~~~~tl~l~ 526 (533)
...+.+++.||++||.+++-.+|.+++...| .|+| -.|. ++..|..|...+|..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 4456789999999999999999999999998 4555 2565 4678999999999999985
No 144
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=91.40 E-value=0.35 Score=37.67 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=47.3
Q ss_pred ecCCCcHHHHHHHHhhhcC-CCCCcEEEEEcCeecCCCCccccc-CCCCCCEEEEEEe
Q 009480 473 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 528 (533)
Q Consensus 473 v~~~~tV~~LK~~I~~~~g-ip~~~q~L~~~g~~L~d~~tL~~~-~I~~~~tl~l~~r 528 (533)
|.++++|.++++.+..... -.-.+..|.++|+.|+|...|++. |+++|++|.|+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5788999999999998854 566778999999999988888887 5888999998754
No 145
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.23 E-value=0.28 Score=46.24 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=52.7
Q ss_pred eeEEEcc-CCceEE-EEeccCccHHHHH-HHhccccCCCCCceeEEe----cceEcCCCCcccccccccCCeEEEE
Q 009480 306 QIFVKTL-TGKTIT-LEVESSDTIDNVK-AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 306 ~i~v~~~-~g~~~~-~~v~~~~ti~~lK-~~I~~~~~ip~~~q~L~~----~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.|++..- .|..++ ...+.+.|+.|++ +.+++...+-+..+|+.+ +|+.|-|+.+|++|+..+++++.+.
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 3444443 334555 4567899999999 555677888887777776 6999999999999999999888876
No 146
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=90.92 E-value=0.91 Score=44.19 Aligned_cols=107 Identities=16% Similarity=0.335 Sum_probs=71.3
Q ss_pred EEeecCCcHHHHHHHhhhhcCCCCCCeeEEecC------ccccCCccccccccCCCceEEEEEeecC---------C---
Q 009480 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG---------G--- 304 (533)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g------~~L~d~~tl~~~~i~~~~ti~l~~~~~~---------~--- 304 (533)
+.|...++|.++-..|.++.|+|++...+.|.- ..++...|+....+.+||.|-+...... .
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 677899999999999999999999988888743 3478899999999999999977653321 0
Q ss_pred --------ceeEE-E--ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe
Q 009480 305 --------MQIFV-K--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (533)
Q Consensus 305 --------~~i~v-~--~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~ 349 (533)
+.+.+ . ...+..+++.++...|-.++.++|.+..+++|..-||+-
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 22222 2 245568999999999999999999999999998666654
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=90.87 E-value=0.79 Score=35.89 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=44.1
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+...++-.+++..||..++.+.++.-+.-.+......|+++++|.|.+++-..++.+.+-
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 445677889999999999999999999999988898899999999999999888888764
No 148
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=90.72 E-value=0.48 Score=36.39 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=40.3
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009480 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g 351 (533)
.|-.++|..-++.+.|+.|+.|+=++++++.|++|....++..|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45678999999999999999999999999999999999998864
No 149
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.28 E-value=0.56 Score=35.86 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009480 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g 351 (533)
.|-.++|+..++.+.|+.|+.|+=+.++++.|+.|+...++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 35578999999999999999999999999999999988888855
No 150
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=90.03 E-value=2.7 Score=32.00 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=48.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|.+... +....++++...||++|-+.+ ++++..-.+..+|..+.. +.-+++|+.|.+.-...||
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 45555432 124677888899999998776 677777777889998864 4446679999998888777
No 151
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.86 E-value=1.3 Score=34.45 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=46.5
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCC----CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++++...||.+|...+...++- ......+..+|+.... +.-+.+|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeCCCCCC
Confidence 566777789999999999987642 3445677788988873 4457779999999999998
No 152
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=87.67 E-value=1 Score=35.11 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=44.4
Q ss_pred ecCCchHHHHHHHhhhhcC-CCCCCeEEEeCCeecCCCCccccc-cCCCCCEEEEEEE
Q 009480 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 224 (533)
Q Consensus 169 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~G~~L~d~~tl~~y-~I~~~~~i~l~~~ 224 (533)
|.++++|.++++-+..... ..-....|.++|+.|++...+++. |+.+|+++.++..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5789999999999977543 344567888999999998888876 4888888887754
No 153
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=87.33 E-value=2.7 Score=30.62 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=42.2
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
|+|++.. ..+++..+.|+.+||..+... .=.|+++|-+..++..|.+ |+.|.+.-|
T Consensus 1 M~I~vN~-----k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~e-----~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVNE-----KEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELKE-----GDEVFLIKK 56 (57)
T ss_pred CEEEECC-----EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccCC-----CCEEEEEeC
Confidence 4555543 457888999999999998763 3378999999988877765 788877653
No 154
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=2.4 Score=39.05 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=64.8
Q ss_pred EEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE-ecC-----cccc-CCCccccccccccCceeEEEEeecceeeeeeecc
Q 009480 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 161 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g-----~~L~-d~~~L~~y~i~~~s~i~l~~~~~~~~~i~vk~~~ 161 (533)
...+.+++.||.++|.|++-..|.+++...|. |.| ..|+ ++..|..|...+|-.||++-.....+.=+--..-
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~~~~~d~s~ 94 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSISNTEDESI 94 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccccccccccc
Confidence 44567889999999999999999999999986 665 3464 4679999999999999987654443311000000
Q ss_pred cceEEEe----ecCCchHHHHHHHhh
Q 009480 162 GKTITLE----VESSDTIDNVKAKIQ 183 (533)
Q Consensus 162 g~~~~i~----v~~~~tV~~lK~~i~ 183 (533)
-..+.+. ...+|||...|.+-.
T Consensus 95 veky~iSee~Y~qRtdSvr~~kk~~~ 120 (234)
T KOG3206|consen 95 VEKYEISEEDYLQRTDSVRRFKKKHG 120 (234)
T ss_pred ceeeecCHHHHhhhhHHHHHHHHHhc
Confidence 1122222 235778998887654
No 155
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=87.20 E-value=4.2 Score=31.59 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=48.1
Q ss_pred EEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc-ceEEE----cc--EEccCCCCcccccccccccceE
Q 009480 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AG--KQLEDGRTLADYNIQKESTLHL 69 (533)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~-q~l~~----~g--~~L~d~~~l~~y~i~~~sti~l 69 (533)
|.-++|...+++|+++.|+.++=++|.++.|+.... --|.+ +| .-|+.++.+.++....+....+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTL 72 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEE
Confidence 567899999999999999999999999999987544 55666 12 2267778888876663343333
No 156
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=86.55 E-value=0.21 Score=49.08 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHhh----------hcCCCCCcEE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEecCCC
Q 009480 476 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 532 (533)
Q Consensus 476 ~~tV~~LK~~I~~----------~~gip~~~q~-----L~~~g~~L~d~~tL~~~~I~-------~~~tl~l~~rl~GG 532 (533)
+.+|.++|..+++ .+++|.+..+ |.|+-+++.|++||+|..-. .+.++.+.+-..||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 6899999999999 8999999999 99999999999999887544 47788887777777
No 157
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=86.23 E-value=2.6 Score=33.09 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=43.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcC-CCC--CcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~g-ip~--~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
....++++...|+++|...+..... +.. ..-.+..+|+...++ .-+++|++|.+.-+..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEeCCCCCC
Confidence 4567788889999999999987651 111 112356677776544 346679999999999888
No 158
>PRK06437 hypothetical protein; Provisional
Probab=86.21 E-value=5.5 Score=30.09 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.++.-.+++..+.|+.++=+. +|+++..-.+..+|..++ .++-+++||.+.+...
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 567778888899999998655 478888777888899886 7788899999998853
No 159
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.88 E-value=3.5 Score=38.36 Aligned_cols=70 Identities=29% Similarity=0.365 Sum_probs=52.1
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCce-eEEec---c---eEcCCCCcccccccc-cCCeEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA---G---KQLEDGRTLADYNIQ-KESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q-~L~~~---g---~~L~~~~tl~~y~i~-~~~~l~l~ 374 (533)
..+-|-.++|.+.++.+++++|++++...++++.|++.... .|++. + .+|+...++.+.... ....++++
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 34667788999999999999999999999999999954322 24441 1 578888888877655 23455554
No 160
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=85.76 E-value=2.1 Score=34.08 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=38.0
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCC---CceeEEe
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 349 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~---~~q~L~~ 349 (533)
+-.+++.|+++-+.+.|+..+.++++.|..++|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 345788999999999999999999999999999987 4677888
No 161
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=84.65 E-value=4.8 Score=32.13 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=44.8
Q ss_pred CceEEEEeccCccHHHHHHHhccccCCCCCceeEEec----c-eEc-CCCCcccccccccCCeEEEEEEec
Q 009480 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQL-EDGRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~----g-~~L-~~~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
...++-.++..|||+.|...+++.+.| +..-||--. + ..| +...|+.+-+|..|.+|.+-.+..
T Consensus 13 ~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 13 QSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp CEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred ccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 346778899999999999999999999 666888541 2 334 456799999999999888876654
No 162
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=84.53 E-value=2.7 Score=32.30 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.9
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEcc
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g 47 (533)
+.|--+||++-.+.|.|+.||.++=+++-++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467789999999999999999999999999999999886776654
No 163
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=83.70 E-value=0.55 Score=46.25 Aligned_cols=72 Identities=26% Similarity=0.420 Sum_probs=52.7
Q ss_pred CeEEEEEecCC--cEEEEEEcCCCcHHHHHHHHhhhhC-CC-CCCeEEEecCccccCCCccccccccc--cCceeEEE
Q 009480 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g-ip-~~~q~L~~~g~~L~d~~~L~~y~i~~--~s~i~l~~ 147 (533)
+..++||..+. +..+|..+...||++||..++...- =| +.+|||+|.||.|.|+..++|.-++. ..++||+.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 45667777664 4567777888999999999887652 22 36799999999999999999876533 33455544
No 164
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.40 E-value=3.6 Score=32.75 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.4
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC---CcEEEEE
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 501 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~---~~q~L~~ 501 (533)
..++...|+.+.+.+.++..+.+|++.|..+.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 345678999999999999999999999999999997 4666766
No 165
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=82.79 E-value=7.8 Score=28.91 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=42.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+|+.+.+ +..|+++|...+ ++++....+-.++..+.. ..-++.-+++|+.|.+.-...||
T Consensus 6 Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT---EATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 3444444 346899998765 667666667788887763 23455667789999999888887
No 166
>smart00455 RBD Raf-like Ras-binding domain.
Probab=82.79 E-value=3.6 Score=31.41 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=39.4
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEcc
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g 47 (533)
+.|-.++|++..+.+.|+.|+.++=+++-+++|+.++.=.++..|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456779999999999999999999999999999988876666644
No 167
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.59 E-value=5.5 Score=31.17 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCe
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 504 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~ 504 (533)
++.+.|++..+.++|..+|.++.++|+++..|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 7889999999999999999999999999999998654
No 168
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=82.31 E-value=4.4 Score=31.45 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=42.3
Q ss_pred eEEEEeecCCcHHHHHHHhhhhcCC----CCCCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009480 240 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
...+++....||.+|.+.+..+++- .........||+... .++-+++||.|.++...
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCC
Confidence 5667777788999999999887642 233455666888776 45678999999887543
No 169
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.16 E-value=5.2 Score=31.27 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.1
Q ss_pred eEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCee
Q 009480 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201 (533)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~ 201 (533)
++.+.|.+.-+..+|.++|.++.++|++.-.|.|+...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 89999999999999999999999999999999998543
No 170
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=81.92 E-value=3.7 Score=31.53 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=38.5
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEec
Q 009480 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~ 350 (533)
.|-.++|+..++.+.|++|++|+=+.+|.+-++.|..+.|-.+
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk 45 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLK 45 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEE
Confidence 5677899999999999999999999999999999998876543
No 171
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=81.70 E-value=7.5 Score=31.05 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec----C-cccc-CCCccccccccccCceeEEEEeec
Q 009480 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQLE-DGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g-~~L~-d~~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
..++..++..|||..+...+.+.+.| ..+-||.-. + ..|. .+.|+.+.++.+|-+|.+-.+...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 45777899999999999999999999 666777532 2 3354 457999999999988877665543
No 172
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=81.55 E-value=8 Score=30.15 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=44.6
Q ss_pred EEEEecCC-CcHHHHHHHHhhhcC-C-C-CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 469 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~-~tV~~LK~~I~~~~g-i-p-~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++++.+ .||.+|+..+.+.++ + . .....+..+++...+ +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 46788876 899999999999874 1 1 123456678887765 4557779999999999998
No 173
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=81.25 E-value=9.2 Score=28.52 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=42.7
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++....||++|-.. .++++...-+..+|..+.-.. -.+.-+++|+.|.+.--.-||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 4567778899888765 588888888888987776332 233336779999998877776
No 174
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=80.58 E-value=4.9 Score=30.75 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=36.0
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g 351 (533)
+.|--++|....+.+.|+.|+.|+=++++++.|+.+....++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 345568899999999999999999999999999999987777544
No 175
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=80.10 E-value=7.6 Score=28.96 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=45.0
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++++...||++|...+ ++++....+..+|+.+..+ .-.+.-+++|+.|.+.-...||
T Consensus 7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 7 EPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 356667788999998876 4778888888999988654 1233447789999999988887
No 176
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=79.50 E-value=8 Score=29.62 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCC--CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...+.+....||.+|.+.+.....- ......+..+|+.+.+ .-.+.-+++|++|.+.-...||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677888999999999999888631 2366788889999888 2445556779999999999888
No 177
>PRK07440 hypothetical protein; Provisional
Probab=79.43 E-value=14 Score=28.13 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=48.8
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.|+|.+.. + ..++....||++|-.. .++++...-+-.+|..+.-+ .-++.-+++|+.|.+.--..||
T Consensus 4 ~m~i~vNG---~--~~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQVNG---E--TRTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEECC---E--EEEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 46665543 2 4677788899988764 57788888888899888632 2445557789999998888877
No 178
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=79.06 E-value=11 Score=28.03 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=43.7
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.++++.+.|+++|...+ ++++....+..+|+.+..+ .-.++-+++|+.|.+.-...||
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45567788999998865 5677777788899887533 2344557889999999888887
No 179
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.92 E-value=7.7 Score=29.66 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.7
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEcc
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g 47 (533)
+.|--++|++..+.|.|+.||.++=.++-+++|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 467779999999999999999999999999999998875554444
No 180
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=78.83 E-value=15 Score=29.10 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=45.0
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCC-----------CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gi-----------p~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...++++ ..||.+|.+.+.+++.- .-....+..+|+...++.. .-+++|+.|.+.-+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 3566776 89999999999988631 1123566778887765432 457889999999999998
No 181
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=78.48 E-value=11 Score=28.08 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=42.9
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++.+..|+.+|-.. .++|+...-+..++..+..+. .+.+ +++|+.|.+.--..||
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 4555677888887765 588999999999998776432 2234 8899999998877777
No 182
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=78.18 E-value=17 Score=26.86 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=39.4
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++++..|+++|...+. ++ ....+..+|..+..+. -.+.-+++|+.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 466778889999988764 33 2346677888765321 223336779999999988887
No 183
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=77.17 E-value=19 Score=26.91 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=41.8
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++....|+++|...+ +.+.....+-.++..+..+ .-++.-+++|+.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 45667788999998764 5555567777888887522 2334457789999999888887
No 184
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=77.00 E-value=3.3 Score=32.24 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=30.2
Q ss_pred EEEEeccCccHHHHHHHhccccCC-CCCceeEEe
Q 009480 317 ITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 349 (533)
Q Consensus 317 ~~~~v~~~~ti~~lK~~I~~~~~i-p~~~q~L~~ 349 (533)
-|+-|.|..|++++..++.+|+.+ .|+.+.|+.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl 49 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFL 49 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEE
Confidence 378899999999999999999998 888899887
No 185
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=74.85 E-value=11 Score=29.80 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=46.3
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEEcCee-----cCCCCcccc----cCCCCCCEEEEEEe
Q 009480 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-----LEDGRTLAD----YNIQKESTLHLVLR 528 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~~g~~-----L~d~~tL~~----~~I~~~~tl~l~~r 528 (533)
..|..+.+.++++.+..+|+..|.++.++.. ..+.|.|-.-+ |..+.-|.+ |.....+++.+.++
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 4567899999999999999999999999976 67788774322 222223444 55556677777654
No 186
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.78 E-value=12 Score=29.14 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=37.0
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 503 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g 503 (533)
+.+.. .|..+.+.++++.|..+|+.+|..+.+++.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 34444 567889999999999999999999999998888888864
No 187
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.64 E-value=12 Score=27.61 Aligned_cols=64 Identities=23% Similarity=0.487 Sum_probs=46.8
Q ss_pred CCCeEEEEeecCCcHHHHHHHhhhhc---CCCCCCeeEE-ecCccccCCccccccccCCCceEEEEEe
Q 009480 237 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 237 ~g~~i~~~v~~~~tV~~lK~~I~~~~---gip~~~q~L~-~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|+.+.++.+.+....-+.+.-.+.. |-|++.-.|. -+|..++-++...|||+.++-+++|.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 56777777776665555544444333 3577776666 4888999999999999999999987765
No 188
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=74.59 E-value=22 Score=32.84 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=53.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEc--C----eecCCCCcccccCCC-CCCEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA--G----KQLEDGRTLADYNIQ-KESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~~~--g----~~L~d~~tL~~~~I~-~~~tl~l~ 526 (533)
.++.+.|...+|....+.++++.|+.++...++.+.|++... +-|.+- + ..++...+|.+.... ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 356677888999999999999999999999999999995422 233331 1 346667788887665 34556555
Q ss_pred Eec
Q 009480 527 LRL 529 (533)
Q Consensus 527 ~rl 529 (533)
.|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 553
No 189
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=73.96 E-value=6.2 Score=31.16 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.3
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCC-CceeEEecc
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 351 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~-~~q~L~~~g 351 (533)
+++|.++.+.+.++.+..+|++.|.+++++.. ....|.|..
T Consensus 6 ~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 6 TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 46889999999999999999999999999875 667787743
No 190
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=73.68 E-value=88 Score=30.08 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=97.0
Q ss_pred cccCCCCCEEEEEEEecCCeeeEEEcCCCCeEEE----Eee-cCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccc
Q 009480 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL----EVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (533)
Q Consensus 210 ~y~I~~~~~i~l~~~~~~~~~i~V~~~~g~~i~~----~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl 284 (533)
+|-|.+|++|.+.+-........+......++.+ .++ ...|+.++.+.|+.+..- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~--------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------G--------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------c---------
Confidence 5888999999887754433333333333334443 334 577999999999876420 0
Q ss_pred cccccCCCceEEEEEeecCCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCC--ceeEEe---cceE------
Q 009480 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF---AGKQ------ 353 (533)
Q Consensus 285 ~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~--~q~L~~---~g~~------ 353 (533)
+.-....+.+.+....+..++|.-.=++.-.+.+....|+.++-++.- |+.+. ....+. .|+.
T Consensus 62 ---~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AG---G~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 ---GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAG---GVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred ---CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcC---CCCccCCCeEEEEEecCCeEEEEEEE
Confidence 000112233333333345677765545555567777788888766543 33222 111111 2322
Q ss_pred ----cCCCCcccccccccCCeEEEEEEecCCeeEEEEecCCcEEEEEecCCCcHHHHHHHh
Q 009480 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI 410 (533)
Q Consensus 354 ----L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I 410 (533)
+.++..-.++-+++||++++-.. -.++|--.-++.-.+++.++.|+.+.-.+.
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~a 192 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQG 192 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhc
Confidence 23444556888999999998632 135553222344567778899998766554
No 191
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=73.58 E-value=17 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=36.1
Q ss_pred EEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 318 ~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.+.+..+.|..++|+++.. +.-.++++|-... .++.++++|.|.+..|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~-----~d~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP------DADIVILNGFPTK-----EDIELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccC-----CccccCCCCEEEEEeC
Confidence 3667888999999999885 2236788887644 5677778899988754
No 192
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=73.41 E-value=89 Score=30.04 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=112.8
Q ss_pred ccccCCCceEEEEEeecCCcee-EEEccCCceEEEE----ec-cCccHHHHHHHhccccCCCCCceeEEecceEcCCCCc
Q 009480 286 DYNIQKESTLHLVLRLRGGMQI-FVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359 (533)
Q Consensus 286 ~~~i~~~~ti~l~~~~~~~~~i-~v~~~~g~~~~~~----v~-~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~t 359 (533)
+|-+..||+|.+.+...+.... +....+|. +++. ++ .+-|.+++.+.|..++.-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~-I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------ 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGS-ITFPLIGEVKLGGETPAAAERKIASRLSKG------------------ 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCe-EEeeecceEEECCCCHHHHHHHHHHHHhhc------------------
Confidence 4778899999887654443332 23344454 3333 23 7889999999999753210
Q ss_pred ccccccccCCeEEEEEEecCCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe--ecCee--------
Q 009480 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQ-------- 429 (533)
Q Consensus 360 l~~y~i~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~-------- 429 (533)
.|- .+..+.+......+..++|--.-.+.-.+.+.+..|+.++-...-..+.-......+. .+|+.
T Consensus 62 --~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~ 137 (239)
T TIGR03028 62 --GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAGGVTPDGADVITLVREREGKIFRKQIDFP 137 (239)
T ss_pred --Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcCCCCccCCCeEEEEEecCCeEEEEEEEHH
Confidence 010 1112233333333456666433334445677778898886655433221111111111 23332
Q ss_pred --ccCCccccccccccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCC-CCcEEEEE---cC
Q 009480 430 --LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF---AG 503 (533)
Q Consensus 430 --l~d~~tL~~~~i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip-~~~q~L~~---~g 503 (533)
+..+..-.++-+++|+++++-.. -.++|...-++.-.+.+.+++|+.++-.+..-...-. +..-.++. +|
T Consensus 138 ~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~~g 213 (239)
T TIGR03028 138 ALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDDKG 213 (239)
T ss_pred HHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECCCC
Confidence 22233345677888888888532 2466665555666777788888877666654433321 22223332 33
Q ss_pred eecCCCCcccccCCCCCCEEEEEEe
Q 009480 504 KQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 504 ~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+.-.-.-.+.+ .+++|+.|++--+
T Consensus 214 ~~~~~~~~~~~-~l~~gDii~V~~s 237 (239)
T TIGR03028 214 AVEEVSGELGD-LVQPDDVIYVRES 237 (239)
T ss_pred cEEEEecCCCc-ccCCCCEEEEeCc
Confidence 32111112222 3889999988543
No 193
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=71.89 E-value=22 Score=28.19 Aligned_cols=58 Identities=12% Similarity=0.249 Sum_probs=44.4
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..+++...||++|-.. .++|+...-+-.+|..+.-+ .-+.+-+++|+.|.+.--..||
T Consensus 27 ~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~-~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 27 SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPRS-EWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 4566778899988775 47888777888899888532 4556668889999998887777
No 194
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=71.77 E-value=4.9 Score=40.37 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=54.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC--CcccccCCCCCCEEEEE
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLV 526 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~--~tL~~~~I~~~~tl~l~ 526 (533)
..+.+.+.|........|+..+....|++.+..-++|++.++..+ .+|.+||...++++.+-
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 445678889999999999999999999999999999999999754 58999999999987654
No 195
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.32 E-value=6 Score=39.13 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=42.0
Q ss_pred EEeccCccHHHHHHHhccccCCCCCceeEEe---cceE-----cCCCCcccccccccCCeEEEE
Q 009480 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ-----LEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~---~g~~-----L~~~~tl~~y~i~~~~~l~l~ 374 (533)
-.+...-||-|+|.++..+-|+.+..++|+| .|+. ...+..|-+|+|++||.+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4456677999999999999999999999999 2432 223455667777777776654
No 196
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=69.45 E-value=13 Score=28.64 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=40.3
Q ss_pred EEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccC
Q 009480 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280 (533)
Q Consensus 232 ~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d 280 (533)
.|-.++|+..+..+++++|+.++=+....+.++.+....|...-..++|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 3556889999999999999999999999999998888777665444443
No 197
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=68.09 E-value=36 Score=25.56 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=41.6
Q ss_pred EEecCC-CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 471 LEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~-~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.++... .||++|-.. .++++...-+-.+|..+.-+ .-++.-+++|+.|.+.--..||
T Consensus 10 ~~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 10 IEVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred EEcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 455555 578887764 57888877788899888644 2445557889999998877776
No 198
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=67.97 E-value=16 Score=27.91 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=47.0
Q ss_pred eEEEEeecCCcHHHHHHHhhhhcCC--CCCCeeEEecCccccCCccccccccCCCceEEEEEeec
Q 009480 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~ 302 (533)
.....+....||.+|.+.+..+++- ......+..||+...+ .-.+..+++||+|.++....
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCC
Confidence 5567778899999999999888641 2355777789998888 46677889999998875433
No 199
>KOG4261 consensus Talin [Cytoskeleton]
Probab=67.90 E-value=8 Score=42.64 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=79.7
Q ss_pred EEEEeecCCcHHHHHHHhhhhcCC---CCCCeeEEe------cCccccCCccccccccCCCceEEEEEeecCCceeEEEc
Q 009480 241 ITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 311 (533)
Q Consensus 241 i~~~v~~~~tV~~lK~~I~~~~gi---p~~~q~L~~------~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~v~~ 311 (533)
-++..+++.+|-|--+.|.+++.- -+.++-|.. .|--|+.+++|.+|...+++++-..-+. ...-|.+
T Consensus 15 ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lkvrm 91 (1003)
T KOG4261|consen 15 KTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLKVRM 91 (1003)
T ss_pred eeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccceeee
Confidence 345667999998888888887642 133333332 4556899999999999999999654332 3467889
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCC-CCCceeEEe
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 349 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~i-p~~~q~L~~ 349 (533)
++|..-|..+..+.++.++.--||.+.|| .-+.+.|.-
T Consensus 92 ldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvr 130 (1003)
T KOG4261|consen 92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVR 130 (1003)
T ss_pred cccccceeeecccccHHHHHHHHHhccCccchhhhhhhH
Confidence 99999999999999999999999999998 444444443
No 200
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=67.17 E-value=6.8 Score=39.37 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=58.0
Q ss_pred ccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCC--CccccccCCCCCEEEEEEEecC
Q 009480 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 227 (533)
Q Consensus 161 ~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~--~tl~~y~I~~~~~i~l~~~~~~ 227 (533)
..+.+++.|...-....++...+...|++.+.--|+|+++.+.++ .++..||+..++++.+--+.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 457788888888899999999999999999999999999999765 7899999999999977655443
No 201
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=66.82 E-value=30 Score=26.24 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=39.8
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
...+++.++.|+.++-+.+ ++++..-.+..+|..+. .++-+++||.+.+.+.
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 5667788889999998766 66776666677888774 4777899999998753
No 202
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=66.48 E-value=21 Score=26.41 Aligned_cols=66 Identities=23% Similarity=0.475 Sum_probs=49.7
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHhhhh---CCCCCCeEEE-ecCccccCCCccccccccccCceeEEEEe
Q 009480 84 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~---gip~~~q~L~-~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
..|++..++..+....--+.++--+.. |-|++.=.|- -+|..|+-++.+.|||+.++-++.|.++.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 357888888888887766666654443 4677655555 46888888999999999999998887754
No 203
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=65.44 E-value=28 Score=27.02 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=40.2
Q ss_pred eEEEEeecC-CcHHHHHHHhhhhcC-C-C-CCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 240 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 240 ~i~~~v~~~-~tV~~lK~~I~~~~g-i-p-~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
...+++... .||++|.+.+.++++ + . ........|++...+ +.-+++||+|.+++.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Pp 76 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPP 76 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCC
Confidence 456777766 899999999999875 2 1 122455667877664 567889999988754
No 204
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=64.93 E-value=23 Score=37.68 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=52.5
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCC----CCCcEEEE---EcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gi----p~~~q~L~---~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
+.|...+ +...+-++.+..|+||-..|-...+= +..+..|. -+|.+|+.+.||++.||.||+++++.-+-
T Consensus 5 VtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 5 VTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 4444443 34667778899999999888887753 22334443 47889999999999999999999998653
No 205
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=64.81 E-value=19 Score=27.71 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=37.6
Q ss_pred EEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccE
Q 009480 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (533)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~ 48 (533)
|.-+||++-.+.+.|..||.++=.|+-++.|+.++.=.++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44689999999999999999999999999999887756655553
No 206
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=64.74 E-value=25 Score=37.97 Aligned_cols=65 Identities=35% Similarity=0.491 Sum_probs=42.6
Q ss_pred CcEEEEEecCCCcHHHHHHHhhccc--CCCCcc------ceEeec----Ce-eccCC-------------cccccccccc
Q 009480 390 GKTITLEVESSDTIDNVKAKIQDKE--GIPPDQ------QRLIFA----GK-QLEDG-------------RTLADYNIQK 443 (533)
Q Consensus 390 g~~~~~~v~~~~Tv~~lK~~I~~~~--~vp~~~------q~l~~~----g~-~l~d~-------------~tL~~~~i~~ 443 (533)
+..+.++|-.+|||.++|++|-+-. +.|..+ --|.|. |. .|+|. .||+.|+++.
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3557889999999999999988742 333332 224452 22 35553 4899999999
Q ss_pred CCeEEEEEEec
Q 009480 444 ESTLHLVLRLR 454 (533)
Q Consensus 444 ~~~l~l~~~~~ 454 (533)
|+++.|+.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999998753
No 207
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=64.50 E-value=14 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=37.4
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecce
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~ 352 (533)
-++|.+-.+.+.|+.||.|+=.+++++-|++++...++..|.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 567888889999999999999999999999999888887653
No 208
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=64.41 E-value=36 Score=28.33 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=46.0
Q ss_pred cEEEEEecCcccHHHHHHHHHhh----hC--CCCc-cceEEEccEE--ccCCCCccccc-----ccccccceEEEEe
Q 009480 11 KTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTLHLVLRL 73 (533)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~----~~--i~~~-~q~l~~~g~~--L~d~~~l~~y~-----i~~~sti~l~~~~ 73 (533)
.++++.+.+++|++++.+.+-.+ .+ -+++ .-.|...|+. |..+..|.+|. +..+..+||++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 67999999999999998877665 22 2333 5667778886 77888888776 3456678887653
No 209
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=63.72 E-value=20 Score=27.98 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=38.9
Q ss_pred CeEEEEeecCCcHHHHHHHhhhhcC-CCC--CCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 239 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~g-ip~--~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
....+++....||++|.+.+..+++ +.. ..-.+..||+... .++-+++||+|.++..
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCC
Confidence 4566777788899999999987762 211 1123556777653 4567888999988743
No 210
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=62.90 E-value=38 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=40.4
Q ss_pred CeEEEEeecCCcHHHHHHHhhhhcCC------C-----CCCeeEEecCccccCCccccccccCCCceEEEEEeec
Q 009480 239 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~gi------p-----~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~ 302 (533)
....+++. ..||++|.+.+.++++- . ........||+..+.+.. ..+++||+|.+++..+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppvs 86 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVS 86 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCc
Confidence 35667775 78999999999888641 1 112445567776654422 6789999998875433
No 211
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=62.90 E-value=26 Score=27.76 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=35.0
Q ss_pred eEEEEeccCccHHHHHHHhccccCC--CCCceeEE-e-----cceEcCCCCc
Q 009480 316 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI-F-----AGKQLEDGRT 359 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~I~~~~~i--p~~~q~L~-~-----~g~~L~~~~t 359 (533)
..++.+.+.+|+.+|-+++.+++++ .|..+.|+ + ..+.|+++..
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 7889999999999999999999999 66677785 3 2466654443
No 212
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=62.81 E-value=9.5 Score=38.81 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=51.7
Q ss_pred eeeeeecccceEEEeecCCchHHHHHHHhhhhcC-CCCCCeEEE--eCCeecCC-CCccccccCCCCCEE
Q 009480 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (533)
Q Consensus 154 ~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~d-~~tl~~y~I~~~~~i 219 (533)
.|.++..+|+.+...++.+.||.+++..|..... -+...+.|+ |--+.|.| ..||.+.|+.+...+
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 5677778999999999999999999999988664 444455665 44688865 589999999876544
No 213
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=62.59 E-value=39 Score=26.11 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=35.2
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecC
Q 009480 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (533)
+.++. +|....+.++++.|-.+|+.+|..+.+.+.....|-|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 34443 677889999999999999999999999876666666653
No 214
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=62.26 E-value=67 Score=24.35 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=45.9
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++++...|+++|-+. .|++++..-...+|..+..+ --++.-+++|+.|.+.--..||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 46777878999998776 57888888888999988743 2455567778999988877776
No 215
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=61.70 E-value=25 Score=28.04 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=37.9
Q ss_pred eEEEc-cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcc
Q 009480 307 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360 (533)
Q Consensus 307 i~v~~-~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl 360 (533)
|-||. ++|.++.+.+.++-+-+++.++|++++++. ....+.|... .|-.|+
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti 54 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITM 54 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccc
Confidence 33555 478999999999999999999999999995 3455555443 444444
No 216
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=61.66 E-value=30 Score=26.91 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=34.2
Q ss_pred eEEEeCCCCEEE-EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc
Q 009480 459 IFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 502 (533)
Q Consensus 459 i~v~~~~g~~~~-~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~ 502 (533)
+.+... |..+. +.+..+.+..+|+.+|++..+.+.....+.|.
T Consensus 4 vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 4 VKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 333333 34444 89999999999999999999999888888884
No 217
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=61.50 E-value=16 Score=40.32 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=40.6
Q ss_pred EcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEc
Q 009480 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (533)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L 50 (533)
-..++..+.+-+.++.|+..+.++|.+..|+|...|.|+|.|...
T Consensus 320 s~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 320 SMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 345678899999999999999999999999999999999987764
No 218
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=60.52 E-value=2.8 Score=41.33 Aligned_cols=62 Identities=19% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCcEEEEEEc---C--CCcHHHHHHHHhh----------hhCCCCCCeE-----EEecCccccCCCcccc
Q 009480 75 GGMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLAD 134 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~---~--~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~g~~L~d~~~L~~ 134 (533)
..+.|.+|.+....+.+.+. + +.+|.++|..+++ +.++|.+..+ |.|+-+.+.|.++|.+
T Consensus 77 ~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 45677777776555544432 2 5799999999999 8899998888 9999999999999988
Q ss_pred cc
Q 009480 135 YN 136 (533)
Q Consensus 135 y~ 136 (533)
..
T Consensus 157 ~l 158 (309)
T PF12754_consen 157 VL 158 (309)
T ss_dssp --
T ss_pred HH
Confidence 74
No 219
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=60.08 E-value=21 Score=39.41 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=38.3
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccc
Q 009480 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 126 (533)
.++..+.+-++++.|...++++|+...|+|...|.|+|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 4566788889999999999999999999999999999997543
No 220
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=58.77 E-value=33 Score=26.96 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCC--CCceeEEe
Q 009480 313 TGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF 349 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~I~~~~~ip--~~~q~L~~ 349 (533)
++...++.|++.+|..+|-..+.+|+++. |..+.|+-
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~e 49 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVE 49 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEE
Confidence 46778999999999999999999999996 66666764
No 221
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=58.27 E-value=4.7 Score=39.96 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=44.6
Q ss_pred CeeeEEEeCCCCE--EEEEecCCCcHHHHHHHHhhhcC-CC-CCcEEEEEcCeecCCCCccccc
Q 009480 456 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADY 515 (533)
Q Consensus 456 ~m~i~v~~~~g~~--~~~~v~~~~tV~~LK~~I~~~~g-ip-~~~q~L~~~g~~L~d~~tL~~~ 515 (533)
+..++|+..+.+. ..+..+..-||++||..++..+- -| ...|||+|.|+.|.|...|.|.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 4556666655444 44555678899999999998762 22 3579999999999999888775
No 222
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.01 E-value=14 Score=36.58 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEE---cCe-----ecCCCCcccccCCCCCCEEEEE
Q 009480 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 471 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~---~g~-----~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
.-+.-.-||.|+|..+..+-|+.+...+|++ +|+ ..+.+..|-.|+|++|+.+-+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3456677999999999999999999999987 455 3445678999999999988764
No 223
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=57.87 E-value=20 Score=36.62 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=52.4
Q ss_pred eeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCC-CCCCeeEE--ecCccc-cCCccccccccCCCceE
Q 009480 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 295 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~--~~g~~L-~d~~tl~~~~i~~~~ti 295 (533)
-.|.|+..+|.++...++-++||.+++..|...-+- +...+.|+ |=.+.| +++.||++-|+.|...+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 468899999999999999999999999999987664 33345555 345555 77999999999875443
No 224
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=57.61 E-value=56 Score=26.05 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=32.6
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (533)
|.|.|. ..|....+.|+++-+-.+|.++|.++.++. ....+-|.
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 334443 367899999999999999999999999984 23333343
No 225
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=57.22 E-value=45 Score=24.71 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=40.0
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
..+|+.+.+ + ..|+.++.+.+ ++++..-..-.++..++ .....+..+++||.+.+.+.
T Consensus 4 ~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 4 FVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred EECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEe
Confidence 356777776 3 45899888765 56664445666777665 33455788999999999854
No 226
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=56.73 E-value=15 Score=28.56 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.2
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCCceeEEec
Q 009480 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~ 350 (533)
|+.+.+.+..+..++..+|.++++.|++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 46688899999999999999999999999999995
No 227
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=56.73 E-value=24 Score=28.04 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.8
Q ss_pred eeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCC
Q 009480 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (533)
Q Consensus 230 ~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~ 268 (533)
.+.|..++|.++.+.++.+++..++=+.+..+.|+|.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 455777889999999999999999999999999998774
No 228
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=54.98 E-value=68 Score=24.98 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=37.5
Q ss_pred EEEecC-CCcHHHHHHHHhhhcC-----CCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~-~~tV~~LK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++.+ ..||.+|+..+.++.. ......+..-++....+ +.-+++|+.|-+.-+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 344543 4799999999998862 11222333445543332 3347789999999999988
No 229
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=53.96 E-value=27 Score=27.77 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=32.0
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCC--CceeEEe
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 349 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~--~~q~L~~ 349 (533)
.++...++.+.+++|+.++-..+.+|++++. ..+.|+-
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e 52 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVE 52 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEE
Confidence 4577889999999999999999999999964 5666664
No 230
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=53.87 E-value=24 Score=30.07 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccc
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 514 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~ 514 (533)
+...+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444446999999999999999999999999655566755566666655
No 231
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=53.86 E-value=28 Score=27.72 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.5
Q ss_pred eEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc
Q 009480 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (533)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~ 40 (533)
++=|--++|.++++++..+|+.+.+=+.+.++.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 344556889999999999999999999999999999875
No 232
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=53.56 E-value=44 Score=27.33 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=36.2
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE--cCeec
Q 009480 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL 506 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~--~g~~L 506 (533)
++...|.+..+.|+.+.+..+|+.++++..+++.. ..+.| -|..|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edl 63 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDL 63 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCc
Confidence 45667889999999999999999999999999986 55544 35443
No 233
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=52.18 E-value=29 Score=29.47 Aligned_cols=59 Identities=20% Similarity=0.479 Sum_probs=40.8
Q ss_pred EEEE-EcC-CCcHHHHHHHHhhh----hCCCCCC------eEEEec-----------------Cccc---cCCCcccccc
Q 009480 89 ITLE-VES-SDTIDNVKAKIQDK----EGIPPDQ------QRLIFA-----------------GKQL---EDGRTLADYN 136 (533)
Q Consensus 89 ~~l~-v~~-~~tV~~lK~~i~~~----~gip~~~------q~L~~~-----------------g~~L---~d~~~L~~y~ 136 (533)
+.+. |+. +.||.+|++.+.+. .|+||.+ .++++. ...| +++.+|.++|
T Consensus 17 ~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~g 96 (122)
T PF10209_consen 17 LVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELG 96 (122)
T ss_pred eeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcC
Confidence 3344 776 88999998887655 4676633 444432 1467 6788999999
Q ss_pred ccccCceeEEE
Q 009480 137 IQKESTLHLVL 147 (533)
Q Consensus 137 i~~~s~i~l~~ 147 (533)
|.++..|.+..
T Consensus 97 v~nETEiSfF~ 107 (122)
T PF10209_consen 97 VENETEISFFN 107 (122)
T ss_pred CCccceeeeeC
Confidence 99998887653
No 234
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.14 E-value=30 Score=26.71 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=31.9
Q ss_pred cCCceEEEEec-cCccHHHHHHHhccccCCCCCceeEEec
Q 009480 312 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 312 ~~g~~~~~~v~-~~~ti~~lK~~I~~~~~ip~~~q~L~~~ 350 (533)
.+|.+..+.+. ++.|.++++++|+++++.+.....+.|.
T Consensus 7 ~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 7 YGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred ecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 45677888888 9999999999999999998655666664
No 235
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=51.71 E-value=41 Score=27.92 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=38.5
Q ss_pred EEEEEeecCCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEec
Q 009480 295 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 295 i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~ 350 (533)
|.+.++.-++.+| =|.-.+.+++++|++-+-..|...+++++..|..+|-
T Consensus 31 V~i~l~aiG~~Pi------lK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYV 80 (116)
T KOG3439|consen 31 VQIRLRAIGDAPI------LKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYV 80 (116)
T ss_pred EEEEEeccCCCcc------eecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEE
Confidence 4444444444444 2445689999999999999999999999999998883
No 236
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=50.74 E-value=45 Score=25.63 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCEEEEEec-CCCcHHHHHHHHhhhcCCCCCcEEEEEcC
Q 009480 466 GKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 503 (533)
Q Consensus 466 g~~~~~~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~g 503 (533)
|..+.+.+. .+.+..+|+.+|.++.+.+.....+.|..
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 567888888 89999999999999999987677777643
No 237
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=50.69 E-value=47 Score=26.47 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=29.0
Q ss_pred EEec-CCCcHHHHHHHHhh-hcCCCCCcEEEEEcCeecC----------CCCcccccCCCCCCEEEEE
Q 009480 471 LEVE-SSDTIDNVKAKIQD-KEGIPPDQQRLIFAGKQLE----------DGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 471 ~~v~-~~~tV~~LK~~I~~-~~gip~~~q~L~~~g~~L~----------d~~tL~~~~I~~~~tl~l~ 526 (533)
+.++ ...|+.+|-.+|-. +.|...-...+ +|+.+. .+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~--~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSV--GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEE--S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEe--CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 36799999988644 56655422222 333331 2478999999999988763
No 238
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=50.39 E-value=34 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=32.1
Q ss_pred ccCCceEEEEecc--CccHHHHHHHhccccCCCCCceeEEe
Q 009480 311 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 349 (533)
Q Consensus 311 ~~~g~~~~~~v~~--~~ti~~lK~~I~~~~~ip~~~q~L~~ 349 (533)
+++|.++.+.+++ +.|.+++++.+...++++ ...|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 5789999999999 679999999999999999 455655
No 239
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.38 E-value=31 Score=37.84 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred ceEEEEeccCccHHHHHHHhccccCCCCCceeEEe----cceEcC--CCCcccccccccCCeEEEEEEecCC---eeEEE
Q 009480 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQLE--DGRTLADYNIQKESTLHLVLRLRGG---MQIFV 385 (533)
Q Consensus 315 ~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~----~g~~L~--~~~tl~~y~i~~~~~l~l~~~~~~~---~~i~v 385 (533)
+.+.+-|....++.-.|.-|++..++|.+..++.- +|..++ ++.||...-=.+-=|+.|-..+..+ +.|+.
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~~~~~iTI~LG~~Lk~dE~~~KI~~ 956 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAFQSCFITIKLGAPLKSDEKMMKIIL 956 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhcccceEEEEecCcCCCCceeeEEEe
Q ss_pred -EecCCcE------EEEEecCCCcHHHHHHHhhcccC--------CCCccceEeecCee------ccCCccccccc----
Q 009480 386 -KTLTGKT------ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQ------LEDGRTLADYN---- 440 (533)
Q Consensus 386 -k~~~g~~------~~~~v~~~~Tv~~lK~~I~~~~~--------vp~~~q~l~~~g~~------l~d~~tL~~~~---- 440 (533)
..+...+ +...++.++|+++.|..+-.++. +.+.+-++..++.. ++++.++.+-.
T Consensus 957 L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~~ 1036 (1203)
T KOG4598|consen 957 LDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNWC 1036 (1203)
T ss_pred ehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhhH
Q ss_pred --------------cccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc
Q 009480 441 --------------IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 496 (533)
Q Consensus 441 --------------i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~ 496 (533)
-++++.|-++.+-..+-.+.+.- +.--+-....+.+++..+++..|||++.
T Consensus 1037 ~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~p-----FQEV~Ld~~~~~E~Re~LS~ISgIPiD~ 1101 (1203)
T KOG4598|consen 1037 SHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNP-----FQEVLLDANAEVEFREALSKISGIPVDR 1101 (1203)
T ss_pred HHHHHHHHHhhcccCCCCccchhhheeccccceecCC-----ceeEEecCcchHHHHHHHHHhcCCchhh
No 240
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=49.70 E-value=33 Score=26.76 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 503 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g 503 (533)
++.+.+++..+.++|..+|+++...|++.-.|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 466788999999999999999999999999999853
No 241
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=49.24 E-value=44 Score=26.50 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=31.5
Q ss_pred eEEEEc-CCCcEEEEEecCcccHHHHHHHHHhhhCCCCc
Q 009480 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (533)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~ 39 (533)
.||..+ .++..-++.|.+++|+.+|-..+.++.++..+
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 456655 45678889999999999999999999998753
No 242
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=48.78 E-value=56 Score=26.34 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=44.5
Q ss_pred CCCEEEEEecC-----CCcHHHHHHHHhhhcCCCC-CcEEEEEc---Ce--ecCCCCccccc-----CCCCCCEEEEEEe
Q 009480 465 TGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLADY-----NIQKESTLHLVLR 528 (533)
Q Consensus 465 ~g~~~~~~v~~-----~~tV~~LK~~I~~~~gip~-~~q~L~~~---g~--~L~d~~tL~~~-----~I~~~~tl~l~~r 528 (533)
.|..+.+.++. +.+..+|+.+|.+..++|+ ....|.|. |. .|.++.-|.++ .-....++.+.++
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 45566777764 6899999999999999998 66677663 33 34444333332 3346788888776
Q ss_pred c
Q 009480 529 L 529 (533)
Q Consensus 529 l 529 (533)
+
T Consensus 88 ~ 88 (91)
T cd06398 88 V 88 (91)
T ss_pred E
Confidence 4
No 243
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=46.80 E-value=63 Score=25.43 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=44.6
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe-cceEcCCCCcccccccccCCeEEEEEEe
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 377 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~-~g~~L~~~~tl~~y~i~~~~~l~l~~~~ 377 (533)
..+..+++...+..||+++-+ .+|+|..+-.++. +|+..+- +|-+++|+.+.+.+..
T Consensus 20 ~r~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~~ 77 (81)
T PF14451_consen 20 RRGGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPVF 77 (81)
T ss_pred hcCCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEecc
Confidence 346788899999999998854 5799998888777 6776543 4888899999988654
No 244
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=46.40 E-value=62 Score=25.46 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.1
Q ss_pred eCCCCEEEEEecC--CCcHHHHHHHHhhhcCCCCCcEEEEE
Q 009480 463 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 501 (533)
Q Consensus 463 ~~~g~~~~~~v~~--~~tV~~LK~~I~~~~gip~~~q~L~~ 501 (533)
+..|.+..+.+++ +.+..+|++.|....+++ .+.|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3567788899998 679999999999999999 444444
No 245
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=46.36 E-value=91 Score=24.08 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCcEEE-EEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecC
Q 009480 85 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (533)
Q Consensus 85 ~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (533)
.|.... +.+.++.+..+|+.+|+++.+.+.....|.|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444 899999999999999999999987777777764
No 246
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=46.27 E-value=84 Score=23.22 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=39.8
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+|+.+. +....|+.++.+.+. +++..-.+..+|..++.+ .-.++.+++||.+.+.+.
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEELG----LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEe
Confidence 455444 456789999987764 667767777788865432 334467999999999864
No 247
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=46.14 E-value=31 Score=27.98 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=35.9
Q ss_pred EeecCCchHHHHHHHhhhhcCCCCCCeEEEeCC-------eecCCC---Ccc--ccccCCCCCEEEEEEEecCC
Q 009480 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQLEDG---RTL--ADYNIQKESTLHLVLRLRGG 228 (533)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G-------~~L~d~---~tl--~~y~I~~~~~i~l~~~~~~~ 228 (533)
+++....||.+|=+.+.+.. |...-+|+..+ ..|-++ +.+ .++-+++|++|.++...++|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 44446779999998887765 33333343322 122222 223 46789999999888755543
No 248
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=45.55 E-value=1.4e+02 Score=23.21 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=29.4
Q ss_pred eEEEEcC-CCcEEEEEecCcccHHHHHHHHHhhhCCC
Q 009480 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (533)
Q Consensus 2 ~i~~~~~-~g~~~~~~v~~~dtv~~ik~ki~~~~~i~ 37 (533)
.||..++ ++..-++.|.+++|..+|-+.+.++.++.
T Consensus 3 kV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 3 RVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred EEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 3444443 36678899999999999999999999988
No 249
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=45.08 E-value=96 Score=22.83 Aligned_cols=58 Identities=14% Similarity=0.318 Sum_probs=39.9
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.+|+.+.+ ..+.|+.++.+.+ ++++..-.+..+|..++.+ .-.++.++++|.+.+.+.
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTF 60 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEe
Confidence 35665544 5677899998865 4666666677788766422 345677999999998854
No 250
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=44.92 E-value=65 Score=26.76 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.1
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCC
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~ 38 (533)
|+|-..+|++-++.|.-.-+-.+||+|+-+|.|.+.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 677789999999999999999999999999999987
No 251
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=44.26 E-value=48 Score=26.33 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=32.2
Q ss_pred EEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcc
Q 009480 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420 (533)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~ 420 (533)
|.|-+.+|...++.|.+.+|+.++-+.+.++.++....
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 45566889999999999999999999999998766553
No 252
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=43.47 E-value=32 Score=25.19 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=37.0
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEE
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
|.|.+++|+... +..+.|+.|+-..|...++=..- .=..+|+. .-.+|.+++++++.+.
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~-----vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQL-----VDLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEE-----EETTSBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEE-----CCCCCCcCCCCEEEEE
Confidence 456678888776 77889999999999964431110 01124443 3346677778887764
No 253
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=43.38 E-value=42 Score=28.51 Aligned_cols=55 Identities=22% Similarity=0.517 Sum_probs=38.4
Q ss_pred ecC-CchHHHHHHHhhhh----cCCCC------CCeEEEeC-----------------Ceec---CCCCccccccCCCCC
Q 009480 169 VES-SDTIDNVKAKIQDK----EGIPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKES 217 (533)
Q Consensus 169 v~~-~~tV~~lK~~i~~~----~gip~------~~q~L~~~-----------------G~~L---~d~~tl~~y~I~~~~ 217 (533)
|+. +.||.+|++.+.+. -|+|| +..++.+. ...| +++.+|.++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 666 88999998887654 45554 22344432 1456 678999999999999
Q ss_pred EEEEEE
Q 009480 218 TLHLVL 223 (533)
Q Consensus 218 ~i~l~~ 223 (533)
.|.++-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 987764
No 254
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=42.77 E-value=84 Score=33.50 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=53.7
Q ss_pred eeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCC------CCCCeeEE-ecCccccCCccccccccCCCceEEEEEe
Q 009480 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 230 ~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gi------p~~~q~L~-~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|.|... .+.+.+-+..+-.|.++--.|.+..+- +.....|. .+|..++.++||.+.+|.+|+.+++...
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 3445544 345788888999999999888887653 23345555 4788999999999999999999999864
No 255
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=42.14 E-value=1e+02 Score=31.16 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++..+.||.+|-.. .+++++..-+..+|+.+.-+ .-.++-+++|+.|.+.--..||
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCC
Confidence 4666778899888765 58899888889999988633 3455668889999999888888
No 256
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=41.91 E-value=31 Score=28.61 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.4
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCC
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~ 342 (533)
++|...+|.+-+++|..-.+..+||+++-.|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999987
No 257
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=41.57 E-value=40 Score=36.50 Aligned_cols=66 Identities=33% Similarity=0.490 Sum_probs=42.7
Q ss_pred CCcEEEEEecCcccHHHHHHHHHhh--hCCCCc------cceEEE----ccE-EccCC-------------CCccccccc
Q 009480 9 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGK-QLEDG-------------RTLADYNIQ 62 (533)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~~--~~i~~~------~q~l~~----~g~-~L~d~-------------~~l~~y~i~ 62 (533)
++..+++.|--.|||..+|+||-+. -+.|.+ .-.|-| .|+ .|.|. .||++|+|.
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 3467889999999999999999664 344433 233433 233 35442 588899999
Q ss_pred ccccceEEEEec
Q 009480 63 KESTLHLVLRLR 74 (533)
Q Consensus 63 ~~sti~l~~~~~ 74 (533)
+++++-|+.+..
T Consensus 280 dga~vaLv~k~~ 291 (539)
T PF08337_consen 280 DGATVALVPKQH 291 (539)
T ss_dssp TTEEEEEEES--
T ss_pred CCceEEEeeccc
Confidence 999999887643
No 258
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=41.45 E-value=22 Score=28.86 Aligned_cols=23 Identities=48% Similarity=0.882 Sum_probs=18.7
Q ss_pred EEEecCccccCCCccccccccccC
Q 009480 118 RLIFAGKQLEDGRTLADYNIQKES 141 (533)
Q Consensus 118 ~L~~~g~~L~d~~~L~~y~i~~~s 141 (533)
.|.|+|++|..+.+|++| +..+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE 25 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE 25 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc
Confidence 478999999999999999 43333
No 259
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=41.03 E-value=1.2e+02 Score=22.27 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=41.0
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.+|+.+ ++..+.|+.++-+. +++++..-.+..+|..++-. .-.++-+++||.+.+...
T Consensus 4 ~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 4 QLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHA 62 (66)
T ss_pred EECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEE
Confidence 3467654 55677898888654 57777777777788766544 345566899999998854
No 260
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=40.54 E-value=1.2e+02 Score=24.77 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=33.6
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEE
Q 009480 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRL 499 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L 499 (533)
-|.|-..++...++.++.+.||++|-..+..+..++. .+.+|
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l 46 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQL 46 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEE
Confidence 3555566777789999999999999999999998877 34444
No 261
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=40.15 E-value=2.2e+02 Score=23.66 Aligned_cols=73 Identities=27% Similarity=0.311 Sum_probs=47.0
Q ss_pred eEEEEEecC-CcEEEEEEcCCCcHHHHHHHHhhhh----C--CCCC-CeEEEecCcc--ccCCCcccccc-----ccccC
Q 009480 77 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKES 141 (533)
Q Consensus 77 m~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~----g--ip~~-~q~L~~~g~~--L~d~~~L~~y~-----i~~~s 141 (533)
+.|.|.... ...+++.+++++|+.++.+.+-.+. + -+++ +-.|--.|+. |..+.+|.+|. +..+.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 334444333 3569999999999999988876651 1 2223 4555566653 55666777774 56778
Q ss_pred ceeEEEEe
Q 009480 142 TLHLVLRL 149 (533)
Q Consensus 142 ~i~l~~~~ 149 (533)
.++|.+..
T Consensus 98 ~~~L~L~~ 105 (108)
T smart00144 98 EPHLVLMT 105 (108)
T ss_pred CceEEEEe
Confidence 88877643
No 262
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=39.29 E-value=78 Score=26.32 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=34.3
Q ss_pred ceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeec
Q 009480 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (533)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L 202 (533)
+.-...|++++|++.+-..+.+..++++..+-++|-+.--
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 3446789999999999999999999999999998876554
No 263
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=38.76 E-value=68 Score=25.99 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=38.8
Q ss_pred EecCCCcHHHHHHHHhhhcCCCCCcEEEEEc-Ce------ecCCCC---cc--cccCCCCCCEEEEEEecCCC
Q 009480 472 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--ADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 472 ~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~-g~------~L~d~~---tL--~~~~I~~~~tl~l~~rl~GG 532 (533)
++....||.+|-..+.+.+ |...-+++.. |+ .|-|+. .| .++-+++|+.|.+.-.+.||
T Consensus 24 ~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred cCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 3335679999999999876 3333344432 21 222322 23 45778999999999988887
No 264
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=37.60 E-value=1.1e+02 Score=31.34 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=52.1
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhc--CCCCCcEEEEEc----Ce--ecCCCCcccccCCCCCCEEEEEE
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GK--QLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~--gip~~~q~L~~~----g~--~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
|-+.++..+| ++.+++.++++.+.|-.++-+.. +-.|++..+.-+ |. .+..++|+.+.|+..|..|+|..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 3455666666 58899999999999988887765 445666666542 22 13467899999999999999876
No 265
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=37.38 E-value=62 Score=26.83 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=32.7
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEcCeecCCCCccccc
Q 009480 471 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 515 (533)
Q Consensus 471 ~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~~~g~~L~d~~tL~~~ 515 (533)
+=|+.+.||+++...|..+..+++++ .-|+.++..+..+.|+++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 34799999999999999999998876 3445566555667777653
No 266
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=36.95 E-value=1.4e+02 Score=23.49 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=39.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCcccccCCCCCCEEEEEE
Q 009480 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
+..+.+.+.+..||+++-+. .|||..+--+++ +|+...-+ |-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 45678889999999876544 699999997764 88877655 4556689887753
No 267
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=36.64 E-value=1.5e+02 Score=23.57 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=32.1
Q ss_pred cCccHHHHHHHhc-cccCCCC-C---ceeEEec-ce---EcCCCCcccccccccCCeEEEEEEe
Q 009480 323 SSDTIDNVKAKIQ-DKEGIPP-D---QQRLIFA-GK---QLEDGRTLADYNIQKESTLHLVLRL 377 (533)
Q Consensus 323 ~~~ti~~lK~~I~-~~~~ip~-~---~q~L~~~-g~---~L~~~~tl~~y~i~~~~~l~l~~~~ 377 (533)
...|+.++-.+|. .++|... + ..+++|. +. .-..+++|++++|.+|+.|.+.-..
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 3569999999865 5777644 2 2234442 22 3345789999999999999987543
No 268
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=35.89 E-value=45 Score=27.12 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=25.6
Q ss_pred EEEEcCeecCCCCccccc-CCCCCCEEEEEEecCCC
Q 009480 498 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRGG 532 (533)
Q Consensus 498 ~L~~~g~~L~d~~tL~~~-~I~~~~tl~l~~rl~GG 532 (533)
.|-|.|++|..+++|++| |-.+-+.|.+.+.-+|+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 477899999999999999 33445566666655554
No 269
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=35.81 E-value=47 Score=37.12 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=42.7
Q ss_pred CCCEEEEEec-CCCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCcccccC
Q 009480 465 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 516 (533)
Q Consensus 465 ~g~~~~~~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~~ 516 (533)
.|+..+++.. ...|+++||..|+.+.|+...+|.+.- +|..+..++.|++|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 4666777766 467999999999999999999998865 577788888888875
No 270
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=35.42 E-value=1.3e+02 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=33.4
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEe
Q 009480 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (533)
++..+|.+-.+.|+.+.|..+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678999999999999999999999999988765 44444
No 271
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.14 E-value=80 Score=30.76 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=55.3
Q ss_pred CCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe--ecCeec---cCCccccccccccCCeEEEE
Q 009480 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 450 (533)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l---~d~~tL~~~~i~~~~~l~l~ 450 (533)
..+++.|+..+|+++..+++...|..++...+.-+.+.-.+--.|. |.-..+ +-.++|..+++-+.+++.|.
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 3467889999999999999999999999999999988766433344 444444 22478888888887776654
No 272
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=35.06 E-value=70 Score=25.00 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=32.1
Q ss_pred ccHHHHHHHhccccCCCCCceeEEe--cceEcCCCCcccccccccCCeEEEEEE
Q 009480 325 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 325 ~ti~~lK~~I~~~~~ip~~~q~L~~--~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.+.+|++.+.+++++++.+.-+|+. .|.+++|+.-++. + +..|..+...
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEEC
Confidence 6899999999999999977777765 5666665533322 2 3445544443
No 273
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=34.88 E-value=1e+02 Score=25.38 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=40.6
Q ss_pred CCcEEEEEecCcccHHHHHHHHHhh----hCCCCc--cceEEEccEE--ccCCCCcccccc-----cccccceEEE
Q 009480 9 TGKTITLEVESSDTIDNVKAKIQDK----EGIPPD--QQRLIFAGKQ--LEDGRTLADYNI-----QKESTLHLVL 71 (533)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~~----~~i~~~--~q~l~~~g~~--L~d~~~l~~y~i-----~~~sti~l~~ 71 (533)
...++++.++++.|++++-+.+-.+ .+.+.. .-.|...|.. |.++..|.+|.- ..+..++|.+
T Consensus 26 ~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~~L~L 101 (106)
T PF00794_consen 26 SQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDPHLVL 101 (106)
T ss_dssp CSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--EEEEE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCcEEEE
Confidence 5679999999999999998888666 222211 4566667775 778888888863 3455666655
No 274
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=34.50 E-value=51 Score=26.16 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=37.8
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCee--------cC------CCCcccccCCCCCCEEEEE
Q 009480 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LE------DGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 471 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~--------L~------d~~tL~~~~I~~~~tl~l~ 526 (533)
++++++.|+.+|-..+++...+....=.+..+++. |+ =+++|.|. +.+|+.|.|+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57899999999999999985444333334444442 32 14789999 8999888875
No 275
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=34.41 E-value=1.1e+02 Score=23.88 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=27.7
Q ss_pred CcHHHHHHHHhhhcCCCCCcEEEEE--cCeecCCCC
Q 009480 477 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGR 510 (533)
Q Consensus 477 ~tV~~LK~~I~~~~gip~~~q~L~~--~g~~L~d~~ 510 (533)
.+..+|+.+.++..+++.+..+|.. +|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCH
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHH
Confidence 6899999999999999977776655 788888764
No 276
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=34.23 E-value=73 Score=24.88 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=27.9
Q ss_pred CccHHHHHHHhccccCCCCCceeEEe--cceEcCCCCcc
Q 009480 324 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTL 360 (533)
Q Consensus 324 ~~ti~~lK~~I~~~~~ip~~~q~L~~--~g~~L~~~~tl 360 (533)
..+.++++.|.++++++|...-+|+. .|.+++++.-+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF 58 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYF 58 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHH
Confidence 35899999999999999766666655 57777665433
No 277
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.67 E-value=1.4e+02 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=24.8
Q ss_pred EEEEEecCcccHHHHHHHHHhhhCCCC
Q 009480 12 TITLEVESSDTIDNVKAKIQDKEGIPP 38 (533)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~~i~~ 38 (533)
.-++.|.+++|+.+|-+.+.++.+++.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~ 44 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAE 44 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 778999999999999999999999933
No 278
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=33.59 E-value=1.3e+02 Score=23.96 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec-------CccccCCCcccc
Q 009480 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 134 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-------g~~L~d~~~L~~ 134 (533)
|.|-..+|..-++.|+...|++++-+.+..+.+...+.=.-++. .+.++|+..+.+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 45666889999999999999999999999998876544332221 356667654433
No 279
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=33.06 E-value=1.6e+02 Score=25.62 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=67.2
Q ss_pred EEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCC------------ccccccCCCCCEEEEEEEecCCeeeE
Q 009480 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR------------TLADYNIQKESTLHLVLRLRGGMQIF 232 (533)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~------------tl~~y~I~~~~~i~l~~~~~~~~~i~ 232 (533)
+-+..-|+..|+.|-.+.+-+-.+..+.-.+.+.|+.|++.. -|..|.+.+|+.=...-...++.++.
T Consensus 17 ilvt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlv 96 (149)
T PF10787_consen 17 ILVTSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLV 96 (149)
T ss_pred HheecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEE
Confidence 334455777888888888877777788888999999998753 35578888887743333345678888
Q ss_pred EEcCCCC-eEEEEeec-CCcHHHHHHH
Q 009480 233 VKTLTGK-TITLEVES-SDTIDNVKAK 257 (533)
Q Consensus 233 V~~~~g~-~i~~~v~~-~~tV~~lK~~ 257 (533)
+.+-.|+ -+++.+-+ .|-|+-+|+.
T Consensus 97 I~tKkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 97 IDTKKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred EEeccCcceeEEEEEecccHHHHHHHh
Confidence 9888776 67777765 4567777764
No 280
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=32.25 E-value=86 Score=24.22 Aligned_cols=37 Identities=19% Similarity=0.457 Sum_probs=28.6
Q ss_pred CccHHHHHHHhccccCCCCCceeEEe--cceEcCCCCcc
Q 009480 324 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTL 360 (533)
Q Consensus 324 ~~ti~~lK~~I~~~~~ip~~~q~L~~--~g~~L~~~~tl 360 (533)
..+.++++.+.++++++|...-+|+. .|.+++++.-+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF 56 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYF 56 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHH
Confidence 35899999999999999976666655 67777766443
No 281
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=32.03 E-value=73 Score=35.71 Aligned_cols=58 Identities=21% Similarity=0.388 Sum_probs=47.3
Q ss_pred CCCeEEEEeec-CCcHHHHHHHhhhhcCCCCCCeeEEe-cCccccCCccccccccCCCce
Q 009480 237 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKEST 294 (533)
Q Consensus 237 ~g~~i~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~d~~tl~~~~i~~~~t 294 (533)
.|.+.+|..+. ..|+.+||.+|+...|+...++.|.- .|..|.-++.+..|.-.-.+|
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdT 62 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDT 62 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCC
Confidence 57788888874 66999999999999999888887775 677889999999987554433
No 282
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=31.79 E-value=22 Score=36.37 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.3
Q ss_pred ecCCcEEEEEEc-CCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCcc
Q 009480 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (533)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L 132 (533)
..+|....+.+. .++.+..+|.++.+..++++..|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 466777777777 78899999999999999999999999999999888443
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=31.59 E-value=1.9e+02 Score=29.23 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=33.9
Q ss_pred EEeccCccHHHHHHHhccccCCCCCceeEEec-ceEcCCCCcccccccccCCeEEEEE
Q 009480 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~-g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
+.+..+.||.|++++|..-+--... +-++.+ ...-++.+.=.+|-+.++|.+.++.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~Fr-yA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFR-YARVWGKSVKHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcc-eEEEeccCCCCCccccCcCcCccCCCeEEEee
Confidence 6788999999999999863321111 222221 2222333444577778888887763
No 284
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=30.97 E-value=1.9e+02 Score=22.19 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=45.3
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCcccccCCCCCCEEEEE
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
-..+.|+++.....+-.-.++.+.+|+..--++- +|.-+...+|-.+--++.|+.|.|.
T Consensus 17 ~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 17 YKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred ceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 3567899999888888888888999998877654 6889999999988888899998763
No 285
>PRK01777 hypothetical protein; Validated
Probab=29.99 E-value=3e+02 Score=22.32 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=40.9
Q ss_pred CeeeEEEe-CCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCC--c-----EEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009480 456 GMQIFVKT-LTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 456 ~m~i~v~~-~~g--~~~~~~v~~~~tV~~LK~~I~~~~gip~~--~-----q~L~~~g~~L~d~~tL~~~~I~~~~tl~l 525 (533)
.|+|.|-. ... ....+++++..||.++-... ||+.. + -.+.-+|+....++. +++|+.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~~-----L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTDV-----LRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCCc-----CCCCCEEEE
Confidence 35555543 222 23677889999999987765 55554 2 345557776665444 455899887
Q ss_pred EEec
Q 009480 526 VLRL 529 (533)
Q Consensus 526 ~~rl 529 (533)
.-.|
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 6554
No 286
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=1.2e+02 Score=29.59 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=55.0
Q ss_pred cceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEE--eCCeecC-C--CCccccccCCCCCEEEE
Q 009480 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE-D--GRTLADYNIQKESTLHL 221 (533)
Q Consensus 151 ~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~-d--~~tl~~y~I~~~~~i~l 221 (533)
....+.|+..+|+++....++..|...++.-+.-..+.......|. |--+.+. | .++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3457788889999999999999999999999999888776555554 2233342 2 37888999988888754
No 287
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=29.74 E-value=26 Score=35.81 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=43.7
Q ss_pred ecccceEEEeec-CCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccc
Q 009480 159 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209 (533)
Q Consensus 159 ~~~g~~~~i~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~ 209 (533)
..+|..+.+.+. .+..+..+|.++....+++++.|.+.+.|..|.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 346788887777 677899999999999999999999999999999885543
No 288
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=29.44 E-value=1.2e+02 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=33.3
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE
Q 009480 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 501 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~ 501 (533)
..|.+..+.++..-|-+.|+++|...+.+|++..-+.|
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 45667788888889999999999999999998888877
No 289
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=29.33 E-value=58 Score=27.75 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=38.8
Q ss_pred EEEcCCCcHHHHHHHHhhhhCCCCCCeEEEe-cCccccCCCcccccc---ccccCceeEEEE
Q 009480 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN---IQKESTLHLVLR 148 (533)
Q Consensus 91 l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~g~~L~d~~~L~~y~---i~~~s~i~l~~~ 148 (533)
+-|+.+.||+++..-|..+.++++++ ..+| ++..+....++.+-. -.++..+++...
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 36899999999999999999999988 4444 454445555666532 123445555543
No 290
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=28.64 E-value=1.5e+02 Score=23.91 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=31.6
Q ss_pred ccCCceEEEEecc-----CccHHHHHHHhccccCCCC-CceeEEec
Q 009480 311 TLTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFA 350 (533)
Q Consensus 311 ~~~g~~~~~~v~~-----~~ti~~lK~~I~~~~~ip~-~~q~L~~~ 350 (533)
+++|.++.+.+.. +-+.++++++|++.+++++ ....|.|.
T Consensus 6 ~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 6 KYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 3567777777764 6899999999999999988 55566664
No 291
>PRK08453 fliD flagellar capping protein; Validated
Probab=28.58 E-value=1.4e+02 Score=33.36 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=53.1
Q ss_pred ccCCceEEEEeccCccHHHHHHHhcc-----------ccCCCCCceeEEecceEcCC------CCcccccccccCCeEEE
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQD-----------KEGIPPDQQRLIFAGKQLED------GRTLADYNIQKESTLHL 373 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~-----------~~~ip~~~q~L~~~g~~L~~------~~tl~~y~i~~~~~l~l 373 (533)
+.+|+++++.+...+|+++|+.+|=+ +.| ....++|+..+...-. +.+|+.-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 45699999999999999999999984 222 1124777775443332 33444344444331112
Q ss_pred EEEecCCeeEEEEecCCcEEEEEe
Q 009480 374 VLRLRGGMQIFVKTLTGKTITLEV 397 (533)
Q Consensus 374 ~~~~~~~~~i~vk~~~g~~~~~~v 397 (533)
-+...+...|.||+.+|+.+++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 222245577889989997775544
No 292
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=28.24 E-value=3.1e+02 Score=21.82 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=43.5
Q ss_pred EEEEEecCCCcHHHHHHHHhhhc-CC--CC--C-cEEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 009480 468 TITLEVESSDTIDNVKAKIQDKE-GI--PP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~-gi--p~--~-~q~L~~~g--~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
...+-|+..+|+.++=++++... |. ++ . .-++.++| ..+..+.|+++.||.+-+.|.+...
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 35678999999999999998774 43 22 2 45677888 8899999999999999999988653
No 293
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=27.75 E-value=2.3e+02 Score=20.89 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=39.0
Q ss_pred CCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 237 ~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|+.+.+. +..|+.+|-. ..++++..-...+++..+.-+..= .+ +++||.|.++..
T Consensus 6 NG~~~~~~--~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEVD--EQTTVAALLD----SLGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTA 61 (65)
T ss_pred CCEEEEcC--CCCcHHHHHH----HcCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEee
Confidence 45555543 6678877644 357888888888999877554443 35 899999987743
No 294
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=27.73 E-value=1.6e+02 Score=25.70 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=58.5
Q ss_pred ecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCC------------cccccccccccceEEEEecCCeEEEEEec
Q 009480 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTL 84 (533)
Q Consensus 17 v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~------------l~~y~i~~~sti~l~~~~~~~m~i~vk~~ 84 (533)
--|+-.|+.+-.|.+-......+.=+.-++|+.|++... |+.|.+..+..-.+.-+..++..+.|++-
T Consensus 21 ~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tK 100 (149)
T PF10787_consen 21 SLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTK 100 (149)
T ss_pred cCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEec
Confidence 346778888888876655566666688999999987532 34566655554333222345677888888
Q ss_pred CCcE-EEEEEcC-CCcHHHHHHH
Q 009480 85 TGKT-ITLEVES-SDTIDNVKAK 105 (533)
Q Consensus 85 ~g~~-~~l~v~~-~~tV~~lK~~ 105 (533)
.|+. +++-+-+ +|-|.-+|+.
T Consensus 101 kGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 101 KGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cCcceeEEEEEecccHHHHHHHh
Confidence 7764 7777655 4566666655
No 295
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.71 E-value=80 Score=24.02 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=32.2
Q ss_pred CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009480 477 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 477 ~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l 525 (533)
.|+++|....++++|++ ..-.+.-+|-+++|=..+ .+|+.|++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~I-----RDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVI-----RDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEE-----EcCCEEEE
Confidence 79999999999999997 455566677777765444 44777765
No 296
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=27.66 E-value=1e+02 Score=25.88 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=39.8
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEE-EcCeecCCCCcccc---cCCCCCCEEEEEEe
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLAD---YNIQKESTLHLVLR 528 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~---~~I~~~~tl~l~~r 528 (533)
.+-|+.+.||+++...|..+..+++++-..+ .++.....+.++++ +.=.++.-|++...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEe
Confidence 3459999999999999999999998875444 45543345555543 22233556666653
No 297
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=27.04 E-value=2.9e+02 Score=21.20 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=52.0
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L-~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~G 531 (533)
..+.|+++.....+-.-.++++.+|+..--+ .-+|.-+...+|-..+-++.|+.|.+.-|=|=
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrv 81 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRV 81 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccC
Confidence 4568888888888888888889998876654 56788999999999999999999999887663
No 298
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=26.21 E-value=4.7e+02 Score=23.31 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=70.0
Q ss_pred cccccCCeEEEEEEecCCee--EEEEecCCcEEEEE----e-cCCCcHHHHHHHhhcccCCCCccceEeecCeeccCCcc
Q 009480 363 YNIQKESTLHLVLRLRGGMQ--IFVKTLTGKTITLE----V-ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 435 (533)
Q Consensus 363 y~i~~~~~l~l~~~~~~~~~--i~vk~~~g~~~~~~----v-~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~t 435 (533)
|-|.+||.|.+.....+... +.| ..+|. +++. + -.+.|+.++.+.|++++.
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V-~~dG~-I~lP~iG~v~v~G~T~~e~~~~I~~~l~-------------------- 58 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPV-RPDGK-ITTPLVGDLVASGKTPTQLARDIEEKLA-------------------- 58 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEE-CCCCe-EeecccCeEEECCCCHHHHHHHHHHHHH--------------------
Confidence 55777787777655433332 222 23332 2221 1 268999999999999853
Q ss_pred ccccccccCCeEEEEEEe-cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC----CcEEEEE--cCe--ec
Q 009480 436 LADYNIQKESTLHLVLRL-RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP----DQQRLIF--AGK--QL 506 (533)
Q Consensus 436 L~~~~i~~~~~l~l~~~~-~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~----~~q~L~~--~g~--~L 506 (533)
.|=..+.-++.+..-. .....++|...-.+.-.+.+.+..|+.++-... -|+.+ +.-.++- +|+ ..
T Consensus 59 --~~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~A---GG~~~~a~~~~v~i~R~~~~~~~~~ 133 (165)
T TIGR03027 59 --KYVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAV---GGLTDFADGNRAVIVRTVDGEQKQI 133 (165)
T ss_pred --HhccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHc---CCCCcccCCCeEEEEECCCCceEEE
Confidence 1100111122222111 123456665443333345567888887766554 34443 2334443 232 11
Q ss_pred --------CCCCcccccCCCCCCEEEEEE
Q 009480 507 --------EDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 507 --------~d~~tL~~~~I~~~~tl~l~~ 527 (533)
.++..=.+.-+++|++|++--
T Consensus 134 ~idl~~l~~~g~~~~n~~L~~gD~I~Vp~ 162 (165)
T TIGR03027 134 SVRLKDLIKDGDVTANVELKPGDVLIIPE 162 (165)
T ss_pred EEEHHHHhhcCCccCCceeCCCCEEEEec
Confidence 111222455588999998753
No 299
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=26.18 E-value=2.9e+02 Score=21.82 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=41.3
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeec
Q 009480 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
.+|+... ++...||.+|-+. .++++..--+-.+|..+.- ...+++-+++|+.|.++-...|
T Consensus 23 VNG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgG 83 (84)
T PRK06083 23 INDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAG 83 (84)
T ss_pred ECCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecC
Confidence 4566554 5667788877654 4777766667788888743 3455666889999988755444
No 300
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=26.18 E-value=1.4e+02 Score=23.08 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHhhhcCCCCCcEE--EEEcCeecCCCC
Q 009480 476 SDTIDNVKAKIQDKEGIPPDQQR--LIFAGKQLEDGR 510 (533)
Q Consensus 476 ~~tV~~LK~~I~~~~gip~~~q~--L~~~g~~L~d~~ 510 (533)
-.+.++|+.+.++..++|...-+ |.-+|..++|+.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 45899999999999999955444 455899998764
No 301
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=26.12 E-value=2e+02 Score=26.34 Aligned_cols=98 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CeeEEecCccccCCccccccccCCCceEEEEEeecCCceeEE-------------EccCCceEEEEeccCcc--------
Q 009480 268 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV-------------KTLTGKTITLEVESSDT-------- 326 (533)
Q Consensus 268 ~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~v-------------~~~~g~~~~~~v~~~~t-------- 326 (533)
+.++-|+|.+++.--.+..+||+..+.+.+. +++.+-+ .-.+...+-+-++-.|.
T Consensus 7 ~~~i~YDGsqi~slWAy~~fgi~gdSIV~Fr----G~c~V~~e~MvDleDv~~~~~I~S~dmlhFIvEhFD~~dl~~~~~ 82 (183)
T PF04017_consen 7 DERIDYDGSQISSLWAYRNFGIQGDSIVVFR----GPCDVKIEHMVDLEDVREEEEIKSDDMLHFIVEHFDSPDLKLAYL 82 (183)
T ss_dssp SSE--BSSGGGSTTHHHHHH---SSEEEEEE----EEEE--GGG--BHHHHHTT---EEEEEEEEEEEE-S---HHHHHH
T ss_pred CCCcCcChhhhhHHHHHHhcCCCCCeEEEEE----cCccccHHHcccHHHhcCCCcccCccceEEEEeeCCCCcHHHHHH
Q ss_pred -----HHHHHHHhccccCCCCCcee--EEecceEcCCCCcccccccccCCeEEEEEEecCCeeEEE
Q 009480 327 -----IDNVKAKIQDKEGIPPDQQR--LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV 385 (533)
Q Consensus 327 -----i~~lK~~I~~~~~ip~~~q~--L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~v 385 (533)
|.-+|+.+.+. |+...+.. |+++|+.| ++.+.-.+..++.|++
T Consensus 83 rQRLlv~i~kE~L~~~-gv~~~R~GDDLy~~~~KL---------------SVSIAt~s~vS~kIH~ 132 (183)
T PF04017_consen 83 RQRLLVAIIKEVLEEY-GVKLRREGDDLYVNGRKL---------------SVSIATASPVSTKIHF 132 (183)
T ss_dssp HHHHHHHHHHHHHHTT-T--EEEETTEEEETTEE----------------EEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHhc-CCceeecccceeECCCEE---------------EEEEEecCcchheEEE
No 302
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=25.31 E-value=2e+02 Score=23.44 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.8
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCC-CceeEEe
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 349 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~-~~q~L~~ 349 (533)
.+|-..|+....++|++|+-.++..|+.+++ ..++|+-
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l 48 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSL 48 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEE
Confidence 3466678999999999999999999999877 5566554
No 303
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=24.94 E-value=4.9e+02 Score=23.10 Aligned_cols=109 Identities=22% Similarity=0.375 Sum_probs=68.5
Q ss_pred EEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccc----eEEEEe-cCCeEEEEEecCCc
Q 009480 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL----HLVLRL-RGGMQIFVKTLTGK 87 (533)
Q Consensus 13 ~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti----~l~~~~-~~~m~i~vk~~~g~ 87 (533)
|+-+.-.-+|.+.+=.++.+-.|| .+.+.+|..|+..- -|+...+... +-.+.. ...+.+.|+. .
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v---G 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV---G 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE---e
Confidence 444555668888888888886665 56888999887532 2444333322 222222 2345555542 2
Q ss_pred EEEEEEcC-CCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccc
Q 009480 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (533)
Q Consensus 88 ~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y 135 (533)
.+-++++. .+.+..+++...+..-++-+ +..|+-+....|++||
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 46778887 77778888777765533322 2358999999999998
No 304
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=24.64 E-value=3.1e+02 Score=22.40 Aligned_cols=71 Identities=23% Similarity=0.398 Sum_probs=44.4
Q ss_pred eeeEEEeC-CCCEEEEEecCCCcHHHHHHHHhhh--cCCCCC----cEEEEEcCe--ecCCCCcccccC-----CCCCCE
Q 009480 457 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKEST 522 (533)
Q Consensus 457 m~i~v~~~-~g~~~~~~v~~~~tV~~LK~~I~~~--~gip~~----~q~L~~~g~--~L~d~~tL~~~~-----I~~~~t 522 (533)
+.|.|... .+..+++.++.+.|+.+|...+-.+ .+..+. +..|--.|+ -|..+.+|.+|. +..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34444444 5567899999999999999888777 223222 567776776 466788888884 345666
Q ss_pred EEEEE
Q 009480 523 LHLVL 527 (533)
Q Consensus 523 l~l~~ 527 (533)
++|.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 66655
No 305
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=23.79 E-value=88 Score=28.84 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=48.2
Q ss_pred EEEEc-CCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccE--EccCCCCcccccccccccceEEEEecCCeEE
Q 009480 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (533)
Q Consensus 3 i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~--~L~d~~~l~~y~i~~~sti~l~~~~~~~m~i 79 (533)
+-+++ .+|+.+.-....++.++.. .--..+.|.++.+|. .+-|..+.++|.+....--.-..-+.++|.+
T Consensus 38 vk~knL~tG~~~e~~f~~~~kve~~-------~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~v 110 (184)
T TIGR00038 38 VKLKNLLTGKVLEKTFRSGEKVEKA-------DVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEV 110 (184)
T ss_pred EEEEECCCCCEEEEEeCCCCEEEcc-------cEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCEE
Confidence 33343 5677777777777643332 111234567777663 3445556667766543211111223567888
Q ss_pred EEEecCCcEEEEEEcC
Q 009480 80 FVKTLTGKTITLEVES 95 (533)
Q Consensus 80 ~vk~~~g~~~~l~v~~ 95 (533)
.|..++|+.+.++++.
T Consensus 111 ~v~~~~~~~i~v~lP~ 126 (184)
T TIGR00038 111 SVTFYNGEPIGVELPN 126 (184)
T ss_pred EEEEECCEEEEEECCC
Confidence 8888888877766643
No 306
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.62 E-value=2.7e+02 Score=23.24 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=31.0
Q ss_pred CeEEEEcCCCc--EEEEEecCcccHHHHHHHHHhhhCC
Q 009480 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGI 36 (533)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~~i 36 (533)
|..|+.+.+++ +-.+.|..++|+.+|.+-+-+|..+
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~ 61 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRP 61 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcc
Confidence 77899998886 4459999999999999999998874
No 307
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.51 E-value=61 Score=33.81 Aligned_cols=54 Identities=26% Similarity=0.279 Sum_probs=47.0
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEE
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 523 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl 523 (533)
.++.+..-|=.+|...|+++.||+-.+.+.+-+|+.|.-.+||++.|+.....+
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~ 106 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQEL 106 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHH
Confidence 456677778889999999999999999999999999999999999998765433
No 308
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=22.81 E-value=2.3e+02 Score=23.65 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=35.9
Q ss_pred ceeEEEccCCceEE--EEeccCccHHHHHHHhccccCCC-----CCceeEEe
Q 009480 305 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIF 349 (533)
Q Consensus 305 ~~i~v~~~~g~~~~--~~v~~~~ti~~lK~~I~~~~~ip-----~~~q~L~~ 349 (533)
|.+|....+++.-+ +-|+..+|..++...+-+|+.+. +..+.|+-
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYe 75 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYE 75 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEE
Confidence 67888888877654 77999999999999999998843 45677765
No 309
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=22.47 E-value=2.9e+02 Score=21.96 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=41.0
Q ss_pred EEEEEcCCCcHHHHHHHHhhhh-CC--CC---CCeEEEecC--ccccCCCccccccccccCceeEEE
Q 009480 89 ITLEVESSDTIDNVKAKIQDKE-GI--PP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~-gi--p~---~~q~L~~~g--~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.-+-|+..+|+.++-+++..+. |. ++ ...++..+| ..+..+.++++-||.+-..|.+..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 4567999999999999998763 42 22 346667888 889999999999998887777654
No 310
>PRK08453 fliD flagellar capping protein; Validated
Probab=22.38 E-value=2.3e+02 Score=31.85 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=55.4
Q ss_pred CCCCeEEEEeecCCcHHHHHHHhhhhcC-------C---CCCCeeEEecCccccCCc------cccccccCCCceEEEEE
Q 009480 236 LTGKTITLEVESSDTIDNVKAKIQDKEG-------I---PPDQQRLIFAGKQLEDGR------TLADYNIQKESTLHLVL 299 (533)
Q Consensus 236 ~~g~~i~~~v~~~~tV~~lK~~I~~~~g-------i---p~~~q~L~~~g~~L~d~~------tl~~~~i~~~~ti~l~~ 299 (533)
.+|++++++|....|+.+|+.+|-+-.+ + ..+.++|++.+...-.+. +|+.-.+..|.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 3599999999999999999999984221 1 223588998877764444 33333344433111122
Q ss_pred eecCCceeEEEccCCceEEEEe
Q 009480 300 RLRGGMQIFVKTLTGKTITLEV 321 (533)
Q Consensus 300 ~~~~~~~i~v~~~~g~~~~~~v 321 (533)
...+...|++|..+|+..++.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2234567999999998776554
No 311
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=22.22 E-value=3e+02 Score=21.87 Aligned_cols=58 Identities=7% Similarity=0.103 Sum_probs=39.8
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEE-EEEcCe-ecCCCCc---ccccCCCCCCEEEEEE
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK-QLEDGRT---LADYNIQKESTLHLVL 527 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~-L~~~g~-~L~d~~t---L~~~~I~~~~tl~l~~ 527 (533)
..+.|+.+.|++++..-|..+.++++++-. |+.+.. ....+.+ |.++- +++.-|++..
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y 80 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY 80 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence 456699999999999999999999877644 444554 2233344 44444 5566677654
No 312
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.95 E-value=1.7e+02 Score=22.90 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHhhhcCCCCCcEEE--EEcCeecCCCC
Q 009480 476 SDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGR 510 (533)
Q Consensus 476 ~~tV~~LK~~I~~~~gip~~~q~L--~~~g~~L~d~~ 510 (533)
-.+..+|+.+.+++.++|...-++ .-+|.+++|+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 458999999999999996544444 45899998764
No 313
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.44 E-value=1.5e+02 Score=23.16 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=27.5
Q ss_pred CccHHHHHHHhccccCCCCCceeEEe--cceEcCCCCcc
Q 009480 324 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTL 360 (533)
Q Consensus 324 ~~ti~~lK~~I~~~~~ip~~~q~L~~--~g~~L~~~~tl 360 (533)
..+.+|++.|.+++++++...-+|+. .|..++++.-+
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF 58 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFF 58 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHH
Confidence 35899999999999999876566544 57777665433
No 314
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=21.11 E-value=1.1e+02 Score=24.74 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCCCCcee
Q 009480 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~ 346 (533)
..+++++.|++..|=.|||+.++..+++++..-+
T Consensus 19 ~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~Vn 52 (92)
T PRK05738 19 KQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVN 52 (92)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceeEEE
Confidence 3679999999999999999999999999887655
No 315
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.84 E-value=1.5e+02 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCe
Q 009480 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 504 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L-~~~g~ 504 (533)
.+.+.+.|++.+|=.++|..|+..+|+++..-+- ...|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 4689999999999999999999999999877653 34443
No 316
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.68 E-value=1.5e+02 Score=22.89 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=31.5
Q ss_pred EEEeccCccHHHHHHHhccccCCCCCceeEEec-ceEcCCCCcccccccccCCeEEEE
Q 009480 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 318 ~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~-g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.+.+..++||+|+..+|....+- ....-..++ .......+.-.+|.++++|++.+.
T Consensus 18 ~liL~~GaTV~D~a~~iH~di~~-~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 18 PVILRRGSTVEDVCNKIHKDLVK-QFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIV 74 (75)
T ss_pred CEEECCCCCHHHHHHHHHHHHHH-hCCeeEEeccCCcCCCeECCCCCEecCCCEEEEe
Confidence 35667899999999999842211 111222221 000122334456777888888764
No 317
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=20.52 E-value=3.5e+02 Score=20.84 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=38.7
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcC-CCCCcE-----EEE-EcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEG-IPPDQQ-----RLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~g-ip~~~q-----~L~-~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
.+..-..++.|+.+|+..|.+++. +=|... .|. -.|--|+.+.+.+|- ...+++|.+.++
T Consensus 4 KFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 4 KFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 455567899999999999999874 233222 221 134455555566665 447888887765
No 318
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=20.52 E-value=79 Score=27.31 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.6
Q ss_pred cCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 502 AGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 502 ~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+.+..+|++||.+++++-|+-|++.+-
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~ 136 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAIT 136 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEec
Confidence 344568899999999999999998874
No 319
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=20.33 E-value=98 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.7
Q ss_pred EEEEecCCCcHHHHHHHhhcc
Q 009480 393 ITLEVESSDTIDNVKAKIQDK 413 (533)
Q Consensus 393 ~~~~v~~~~Tv~~lK~~I~~~ 413 (533)
+++.++.++|+.++|+.+++.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 578999999999999998875
No 320
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=20.28 E-value=1.4e+02 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=26.6
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCC---CceeEE
Q 009480 316 TITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI 348 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~I~~~~~ip~---~~q~L~ 348 (533)
..++.|+..+|++++-....+++|..- +.++|+
T Consensus 18 y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 18 YVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred eEEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 458999999999999999999999744 445544
No 321
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=20.02 E-value=90 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.0
Q ss_pred EEEEeccCccHHHHHHHhcccc
Q 009480 317 ITLEVESSDTIDNVKAKIQDKE 338 (533)
Q Consensus 317 ~~~~v~~~~ti~~lK~~I~~~~ 338 (533)
+++.++.+.|+.+||..+.+..
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 6789999999999999887643
Done!