Query 009480
Match_columns 533
No_of_seqs 595 out of 3012
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.6E-34 5.6E-39 261.4 17.7 153 1-153 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 5.3E-34 1.8E-38 258.0 19.0 154 380-533 2-158 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 9E-34 3.1E-38 259.7 16.3 152 1-152 21-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 2.5E-33 8.5E-38 256.7 17.9 155 378-532 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 6.8E-32 2.3E-36 242.4 18.2 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 2.1E-31 7.3E-36 239.2 19.4 152 381-532 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 8.8E-19 3E-23 138.4 10.6 77 455-531 3-79 (79)
8 2kdi_A Ubiquitin, vacuolar pro 99.8 9.8E-20 3.3E-24 153.8 3.8 103 75-177 8-113 (114)
9 3plu_A Ubiquitin-like modifier 99.8 1.5E-18 5.3E-23 137.5 9.5 79 449-527 14-92 (93)
10 4fbj_B NEDD8; effector-HOST ta 99.8 1.5E-18 5.1E-23 139.8 9.3 77 457-533 1-77 (88)
11 3plu_A Ubiquitin-like modifier 99.8 1.8E-18 6.3E-23 137.1 9.0 79 69-147 14-92 (93)
12 2uyz_B Small ubiquitin-related 99.7 2.4E-18 8.2E-23 135.8 8.4 77 456-532 3-79 (79)
13 1ndd_A NEDD8, protein (ubiquit 99.7 5.1E-18 1.7E-22 132.8 9.9 76 457-532 1-76 (76)
14 3dbh_I NEDD8; cell cycle, acti 99.7 3.7E-18 1.3E-22 137.8 9.0 79 454-532 10-88 (88)
15 2kdi_A Ubiquitin, vacuolar pro 99.7 2.1E-19 7.1E-24 151.8 0.6 104 150-253 7-113 (114)
16 1wyw_B Ubiquitin-like protein 99.7 5.1E-18 1.8E-22 139.2 8.8 79 454-532 19-97 (97)
17 4hcn_B Polyubiquitin, ubiquiti 99.7 6.5E-18 2.2E-22 139.0 9.4 79 454-532 20-98 (98)
18 4eew_A Large proline-rich prot 99.7 8.8E-18 3E-22 135.5 9.6 87 441-528 2-88 (88)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.2E-17 4E-22 134.5 10.0 80 454-533 5-84 (87)
20 3a9j_A Ubiquitin; protein comp 99.7 1.4E-17 4.8E-22 130.3 10.2 76 457-532 1-76 (76)
21 3phx_B Ubiquitin-like protein 99.7 9.9E-18 3.4E-22 132.3 9.3 77 75-151 3-79 (79)
22 1sif_A Ubiquitin; hydrophobic 99.7 9.9E-18 3.4E-22 135.0 9.2 78 455-532 8-85 (88)
23 3n3k_B Ubiquitin; hydrolase, p 99.7 9.2E-18 3.1E-22 134.5 8.9 78 455-532 2-79 (85)
24 4eew_A Large proline-rich prot 99.7 1.1E-17 3.9E-22 134.8 8.6 87 61-148 2-88 (88)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.1E-17 7.4E-22 132.3 9.9 78 455-532 2-79 (85)
26 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.4E-17 8.3E-22 135.2 10.1 78 456-533 1-78 (96)
27 2l7r_A Ubiquitin-like protein 99.7 1.3E-17 4.6E-22 135.6 8.2 77 454-532 17-93 (93)
28 2kan_A Uncharacterized protein 99.7 2.5E-17 8.7E-22 134.0 9.7 78 454-532 13-91 (94)
29 4fbj_B NEDD8; effector-HOST ta 99.7 1.3E-17 4.6E-22 134.2 7.8 78 77-154 1-78 (88)
30 2hj8_A Interferon-induced 17 k 99.7 1.6E-17 5.4E-22 133.8 8.2 78 455-532 3-80 (88)
31 3vdz_A Ubiquitin-40S ribosomal 99.7 3.8E-17 1.3E-21 137.4 10.4 78 455-532 34-111 (111)
32 1wy8_A NP95-like ring finger p 99.7 5.1E-17 1.7E-21 131.3 10.6 79 455-533 6-86 (89)
33 1yx5_B Ubiquitin; proteasome, 99.7 2.8E-17 9.7E-22 135.3 8.5 92 77-168 1-92 (98)
34 2ojr_A Ubiquitin; lanthide-bin 99.7 3.2E-17 1.1E-21 138.0 8.9 78 455-532 34-111 (111)
35 1uh6_A Ubiquitin-like 5; beta- 99.7 2.2E-17 7.4E-22 133.9 7.3 70 1-70 29-98 (100)
36 2lxa_A Ubiquitin-like protein 99.7 2.4E-17 8.2E-22 131.4 6.9 73 1-73 2-78 (87)
37 3v6c_B Ubiquitin; structural g 99.7 7.2E-17 2.4E-21 130.9 9.7 77 454-530 15-91 (91)
38 2kk8_A Uncharacterized protein 99.7 4.9E-17 1.7E-21 129.4 8.3 75 75-149 9-84 (84)
39 2kk8_A Uncharacterized protein 99.7 4.5E-17 1.6E-21 129.6 7.9 73 1-73 11-84 (84)
40 4dwf_A HLA-B-associated transc 99.7 9.5E-17 3.2E-21 130.0 9.9 78 454-532 3-80 (90)
41 1yx5_B Ubiquitin; proteasome, 99.7 8.9E-17 3.1E-21 132.3 9.3 92 1-92 1-92 (98)
42 1uh6_A Ubiquitin-like 5; beta- 99.7 3.9E-17 1.3E-21 132.4 6.9 73 75-147 27-99 (100)
43 2lxa_A Ubiquitin-like protein 99.7 3.4E-17 1.2E-21 130.5 6.0 73 77-149 2-78 (87)
44 2fnj_B Transcription elongatio 99.7 7.1E-17 2.4E-21 134.6 8.0 75 457-532 1-83 (118)
45 2uyz_B Small ubiquitin-related 99.7 6.2E-17 2.1E-21 127.7 7.0 78 75-152 2-79 (79)
46 3dbh_I NEDD8; cell cycle, acti 99.7 7.4E-17 2.5E-21 130.0 7.6 79 74-152 10-88 (88)
47 2hj8_A Interferon-induced 17 k 99.7 9.9E-17 3.4E-21 129.2 8.0 78 75-152 3-80 (88)
48 3l0w_B Monoubiquitinated proli 99.7 1.8E-16 6.3E-21 143.2 10.7 77 457-533 1-77 (169)
49 4ajy_B Transcription elongatio 99.7 1E-16 3.5E-21 132.9 8.0 74 1-74 1-82 (118)
50 2fnj_B Transcription elongatio 99.7 8.7E-17 3E-21 134.1 7.7 72 1-72 1-80 (118)
51 1ndd_A NEDD8, protein (ubiquit 99.7 1.4E-16 4.6E-21 124.6 8.4 76 77-152 1-76 (76)
52 1sif_A Ubiquitin; hydrophobic 99.7 1.2E-16 4E-21 128.6 7.9 78 75-152 8-85 (88)
53 2faz_A Ubiquitin-like containi 99.7 1.6E-16 5.3E-21 125.0 8.5 75 75-149 1-77 (78)
54 2faz_A Ubiquitin-like containi 99.7 2.6E-16 8.7E-21 123.8 9.6 75 455-529 1-77 (78)
55 1we6_A Splicing factor, putati 99.7 1.5E-16 5.3E-21 133.8 8.3 79 454-532 25-107 (111)
56 4hcn_B Polyubiquitin, ubiquiti 99.7 1.3E-16 4.5E-21 131.1 7.7 79 74-152 20-98 (98)
57 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.1E-16 7.3E-21 127.0 8.7 80 74-153 5-84 (87)
58 4ajy_B Transcription elongatio 99.7 2.2E-16 7.6E-21 130.9 8.9 77 457-533 1-85 (118)
59 1wyw_B Ubiquitin-like protein 99.7 1.2E-16 4E-21 131.1 7.2 79 74-152 19-97 (97)
60 2kan_A Uncharacterized protein 99.7 1.7E-16 5.9E-21 129.1 8.0 79 73-152 12-91 (94)
61 4dwf_A HLA-B-associated transc 99.7 2.2E-16 7.5E-21 127.8 8.7 78 74-152 3-80 (90)
62 1wgd_A Homocysteine-responsive 99.7 2.1E-16 7.3E-21 128.6 8.5 78 455-532 6-89 (93)
63 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.2E-16 7.5E-21 129.5 8.5 81 76-156 1-81 (96)
64 3v6c_B Ubiquitin; structural g 99.7 2.3E-16 7.7E-21 128.0 8.5 77 74-150 15-91 (91)
65 3b1l_X E3 ubiquitin-protein li 99.5 8.9E-18 3E-22 131.5 0.0 75 457-531 1-75 (76)
66 3n3k_B Ubiquitin; hydrolase, p 99.7 1.9E-16 6.4E-21 126.8 7.7 77 76-152 3-79 (85)
67 3a9j_A Ubiquitin; protein comp 99.6 3.1E-16 1.1E-20 122.6 8.5 76 77-152 1-76 (76)
68 3mtn_B UBA80, ubcep1, ubiquiti 99.6 3.8E-16 1.3E-20 124.9 8.4 77 76-152 3-79 (85)
69 3l0w_B Monoubiquitinated proli 99.6 4.2E-16 1.4E-20 140.9 9.5 125 77-204 1-128 (169)
70 4a20_A Ubiquitin-like protein 99.6 4.1E-16 1.4E-20 127.0 8.2 76 74-149 17-96 (98)
71 2dzi_A Ubiquitin-like protein 99.6 6.7E-16 2.3E-20 122.3 9.3 77 454-530 5-81 (81)
72 1wy8_A NP95-like ring finger p 99.6 5.8E-16 2E-20 125.0 9.1 79 75-153 6-86 (89)
73 3q3f_A Ribonuclease/ubiquitin 99.6 3.7E-16 1.3E-20 142.5 8.8 79 454-532 103-181 (189)
74 3vdz_A Ubiquitin-40S ribosomal 99.6 6.5E-16 2.2E-20 129.8 9.0 78 75-152 34-111 (111)
75 1yqb_A Ubiquilin 3; structural 99.6 7.3E-16 2.5E-20 126.9 8.9 78 454-532 20-97 (100)
76 3q3f_A Ribonuclease/ubiquitin 99.6 3.1E-16 1.1E-20 143.0 7.2 84 76-159 105-188 (189)
77 1se9_A Ubiquitin family; ubiqu 99.6 9.3E-16 3.2E-20 129.4 9.4 79 454-532 14-106 (126)
78 1se9_A Ubiquitin family; ubiqu 99.6 5.7E-16 1.9E-20 130.7 8.0 85 68-152 8-106 (126)
79 2wyq_A HHR23A, UV excision rep 99.6 1.1E-15 3.9E-20 122.2 9.4 77 74-150 3-82 (85)
80 1wju_A NEDD8 ultimate buster-1 99.6 6.9E-16 2.4E-20 125.0 8.1 66 466-532 29-94 (100)
81 2l7r_A Ubiquitin-like protein 99.6 3.8E-16 1.3E-20 127.0 6.6 78 73-152 16-93 (93)
82 3m63_B Ubiquitin domain-contai 99.6 2.3E-16 7.8E-21 130.1 5.1 93 129-224 7-99 (101)
83 1wx8_A Riken cDNA 4931431F19; 99.6 4.3E-16 1.5E-20 127.7 6.7 78 454-532 15-92 (96)
84 1v2y_A 3300001G02RIK protein; 99.6 3.9E-16 1.3E-20 128.2 6.3 78 455-532 6-99 (105)
85 2dzi_A Ubiquitin-like protein 99.6 1.4E-15 4.6E-20 120.5 9.2 76 74-149 5-80 (81)
86 2wyq_A HHR23A, UV excision rep 99.6 2.3E-15 7.8E-20 120.4 10.5 76 454-529 3-81 (85)
87 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.1E-15 3.8E-20 127.9 8.3 74 1-74 17-100 (116)
88 1uel_A HHR23B, UV excision rep 99.6 3.2E-15 1.1E-19 122.0 10.8 75 457-531 1-78 (95)
89 1we7_A SF3A1 protein; structur 99.6 1.8E-15 6E-20 128.1 9.5 78 455-532 24-111 (115)
90 3u5e_m 60S ribosomal protein L 99.6 5.2E-17 1.8E-21 140.3 0.0 76 457-532 1-76 (128)
91 3m63_B Ubiquitin domain-contai 99.6 1.9E-16 6.6E-21 130.5 3.4 91 55-148 9-99 (101)
92 3b1l_X E3 ubiquitin-protein li 99.4 6.1E-17 2.1E-21 126.7 0.0 75 77-151 1-75 (76)
93 1uel_A HHR23B, UV excision rep 99.6 2.2E-15 7.4E-20 123.1 9.1 74 77-150 1-77 (95)
94 3u5c_f 40S ribosomal protein S 99.6 6.7E-17 2.3E-21 142.6 0.0 76 457-532 1-76 (152)
95 1wgd_A Homocysteine-responsive 99.6 9E-16 3.1E-20 124.9 6.7 78 75-152 6-89 (93)
96 1j8c_A Ubiquitin-like protein 99.6 3E-15 1E-19 128.1 10.1 77 455-532 31-107 (125)
97 4a20_A Ubiquitin-like protein 99.6 2.9E-15 9.8E-20 122.1 9.4 75 454-528 17-95 (98)
98 1v2y_A 3300001G02RIK protein; 99.6 6.2E-16 2.1E-20 127.0 5.4 78 75-152 6-99 (105)
99 3m62_B UV excision repair prot 99.6 1.4E-15 4.9E-20 126.6 7.5 73 1-73 2-74 (106)
100 2ojr_A Ubiquitin; lanthide-bin 99.6 2.4E-15 8.1E-20 126.5 8.9 79 74-152 33-111 (111)
101 3m62_B UV excision repair prot 99.6 1.9E-15 6.6E-20 125.8 8.2 73 457-529 2-74 (106)
102 1wgh_A Ubiquitin-like 3, HCG-1 99.6 4.8E-15 1.6E-19 124.0 10.5 79 454-532 14-102 (116)
103 1v5o_A 1700011N24RIK protein; 99.6 2.1E-15 7.3E-20 124.7 8.0 78 455-532 6-88 (102)
104 1wju_A NEDD8 ultimate buster-1 99.6 2.5E-15 8.7E-20 121.7 8.1 65 314-379 29-93 (100)
105 1wx7_A Ubiquilin 3; ubiquitin- 99.6 3.3E-15 1.1E-19 124.6 9.0 78 454-532 15-92 (106)
106 2bwf_A Ubiquitin-like protein 99.6 5.5E-15 1.9E-19 115.8 9.7 71 457-528 5-75 (77)
107 2klc_A Ubiquilin-1; ubiquitin- 99.6 7.1E-15 2.4E-19 121.2 10.4 79 453-532 22-100 (101)
108 1ttn_A DC-UBP, dendritic cell- 99.6 4.4E-15 1.5E-19 123.7 9.2 79 454-532 21-99 (106)
109 2bwf_A Ubiquitin-like protein 99.6 4.8E-15 1.6E-19 116.1 8.9 73 76-149 4-76 (77)
110 1we6_A Splicing factor, putati 99.6 2.5E-15 8.5E-20 126.4 7.6 79 74-152 25-107 (111)
111 4dbg_A Ranbp-type and C3HC4-ty 99.6 4.1E-15 1.4E-19 121.5 8.4 72 1-72 25-99 (105)
112 2gow_A HCG-1 protein, ubiquiti 99.6 3.4E-15 1.2E-19 126.8 8.1 78 74-151 15-102 (125)
113 1yqb_A Ubiquilin 3; structural 99.6 3.3E-15 1.1E-19 123.0 7.6 78 74-152 20-97 (100)
114 2gow_A HCG-1 protein, ubiquiti 99.6 5.5E-15 1.9E-19 125.5 8.9 78 455-532 16-103 (125)
115 1ttn_A DC-UBP, dendritic cell- 99.6 4.7E-15 1.6E-19 123.6 7.9 77 74-150 21-97 (106)
116 2klc_A Ubiquilin-1; ubiquitin- 99.5 1.1E-14 3.9E-19 120.0 9.0 78 73-151 22-99 (101)
117 1wx8_A Riken cDNA 4931431F19; 99.5 3.3E-15 1.1E-19 122.4 5.4 77 75-152 16-92 (96)
118 2kdb_A Homocysteine-responsive 99.5 5.7E-15 2E-19 120.6 6.5 73 74-146 21-99 (99)
119 1j8c_A Ubiquitin-like protein 99.5 1.5E-14 5.2E-19 123.7 9.4 77 75-152 31-107 (125)
120 3u5e_m 60S ribosomal protein L 99.5 5.4E-16 1.8E-20 133.9 0.0 77 77-153 1-77 (128)
121 2kdb_A Homocysteine-responsive 99.5 7.2E-15 2.5E-19 120.0 6.5 70 1-70 24-99 (99)
122 4dbg_A Ranbp-type and C3HC4-ty 99.5 3.1E-14 1.1E-18 116.3 9.7 73 456-528 24-99 (105)
123 3u5c_f 40S ribosomal protein S 99.5 8.6E-16 2.9E-20 135.5 0.0 76 77-152 1-76 (152)
124 1v5o_A 1700011N24RIK protein; 99.5 1.1E-14 3.8E-19 120.4 6.6 78 75-152 6-88 (102)
125 1wx7_A Ubiquilin 3; ubiquitin- 99.5 1.8E-14 6.1E-19 120.1 7.8 77 75-152 16-92 (106)
126 1we7_A SF3A1 protein; structur 99.5 2.9E-14 9.8E-19 120.7 8.4 78 75-152 24-111 (115)
127 2xzm_9 RPS31E; ribosome, trans 99.5 1.6E-15 5.5E-20 137.1 0.0 71 457-532 1-71 (189)
128 2kd0_A LRR repeats and ubiquit 99.5 6.7E-14 2.3E-18 111.6 8.0 70 79-148 14-83 (85)
129 2xzm_9 RPS31E; ribosome, trans 99.5 3.1E-15 1.1E-19 135.2 0.0 71 1-76 1-71 (189)
130 2io1_B Small ubiquitin-related 99.5 1.3E-13 4.4E-18 111.5 8.8 79 454-532 5-83 (94)
131 1wgg_A Ubiquitin carboxyl-term 99.5 6.6E-14 2.3E-18 114.2 6.9 74 75-150 6-80 (96)
132 2dzm_A FAS-associated factor 1 99.5 4.5E-14 1.5E-18 115.1 5.9 72 304-376 8-81 (100)
133 1wia_A Hypothetical ubiquitin- 99.5 1.1E-13 3.6E-18 113.0 7.7 74 75-151 6-80 (95)
134 2daf_A FLJ35834 protein; hypot 99.5 1.1E-13 3.7E-18 113.9 7.6 77 153-229 16-93 (118)
135 2daf_A FLJ35834 protein; hypot 99.5 1.6E-13 5.3E-18 113.0 8.5 79 76-154 15-94 (118)
136 2kd0_A LRR repeats and ubiquit 99.5 1.8E-13 6E-18 109.1 8.6 69 459-527 14-82 (85)
137 1v5t_A 8430435I17RIK protein; 99.5 1.1E-13 3.8E-18 111.5 7.5 72 455-527 6-81 (90)
138 1wia_A Hypothetical ubiquitin- 99.5 2E-13 6.8E-18 111.4 9.0 74 455-531 6-80 (95)
139 2dzj_A Synaptic glycoprotein S 99.4 9.4E-14 3.2E-18 111.1 6.3 70 76-145 10-85 (88)
140 2dzm_A FAS-associated factor 1 99.4 6.6E-14 2.3E-18 114.1 5.3 72 1-73 9-82 (100)
141 1x1m_A Ubiquitin-like protein 99.4 2.6E-13 8.8E-18 113.1 8.8 76 455-530 11-101 (107)
142 2dzj_A Synaptic glycoprotein S 99.4 7.7E-14 2.6E-18 111.6 5.2 69 1-69 11-85 (88)
143 1v5t_A 8430435I17RIK protein; 99.4 2.3E-13 7.7E-18 109.8 7.3 71 1-72 8-82 (90)
144 1wgg_A Ubiquitin carboxyl-term 99.4 2.1E-13 7E-18 111.2 6.7 71 455-527 6-77 (96)
145 2kjr_A CG11242; UBL, ubiquitin 99.4 6.4E-13 2.2E-17 107.7 9.4 72 455-526 14-93 (95)
146 2io0_B Small ubiquitin-related 99.4 9.9E-13 3.4E-17 105.5 10.0 79 454-532 3-81 (91)
147 2kjr_A CG11242; UBL, ubiquitin 99.4 5E-13 1.7E-17 108.3 8.3 73 74-146 13-93 (95)
148 3ai5_A Yeast enhanced green fl 99.4 4.7E-13 1.6E-17 130.8 9.7 77 454-530 231-307 (307)
149 1wxv_A BAG-family molecular ch 99.4 5.8E-13 2E-17 107.9 8.6 74 455-529 6-85 (92)
150 1wxv_A BAG-family molecular ch 99.4 4.5E-13 1.6E-17 108.6 7.6 74 75-149 6-85 (92)
151 4b6w_A Tubulin-specific chaper 99.4 4.2E-13 1.4E-17 106.7 7.2 66 84-149 12-84 (86)
152 4b6w_A Tubulin-specific chaper 99.4 3.9E-13 1.3E-17 106.9 7.0 66 160-225 12-84 (86)
153 1v86_A DNA segment, CHR 7, way 99.4 2.6E-13 9E-18 110.5 5.9 72 75-148 16-87 (95)
154 1x1m_A Ubiquitin-like protein 99.4 4.9E-13 1.7E-17 111.5 7.4 73 1-73 13-100 (107)
155 3ai5_A Yeast enhanced green fl 99.4 9.3E-13 3.2E-17 128.7 8.6 78 73-150 230-307 (307)
156 2d07_B Ubiquitin-like protein 99.4 2.3E-12 7.9E-17 104.0 9.4 79 454-532 15-93 (93)
157 2kj6_A Tubulin folding cofacto 99.4 1.6E-12 5.4E-17 105.6 8.2 73 75-147 13-94 (97)
158 1v86_A DNA segment, CHR 7, way 99.4 4.7E-13 1.6E-17 108.9 5.0 72 455-528 16-87 (95)
159 2kj6_A Tubulin folding cofacto 99.3 2E-12 6.9E-17 105.0 8.3 72 456-527 14-94 (97)
160 1oqy_A HHR23A, UV excision rep 99.3 2E-12 6.8E-17 130.2 8.0 78 455-532 6-87 (368)
161 1wz0_A Ubiquitin-like protein 99.3 3.9E-12 1.3E-16 104.5 7.8 80 454-533 22-101 (104)
162 2eke_C Ubiquitin-like protein 99.3 6.5E-12 2.2E-16 103.2 8.8 78 454-532 29-106 (106)
163 2io1_B Small ubiquitin-related 99.3 5.4E-12 1.8E-16 102.0 8.1 77 304-380 7-83 (94)
164 1oqy_A HHR23A, UV excision rep 99.3 2.3E-12 7.7E-17 129.8 7.2 78 75-152 6-87 (368)
165 1wf9_A NPL4 family protein; be 99.3 5E-12 1.7E-16 105.2 6.8 73 75-148 6-94 (107)
166 2k8h_A Small ubiquitin protein 99.3 5.1E-12 1.8E-16 104.6 6.7 80 454-533 24-103 (110)
167 1v6e_A Cytoskeleton-associated 99.3 9E-12 3.1E-16 101.4 7.9 71 457-527 8-86 (95)
168 1wf9_A NPL4 family protein; be 99.3 3.5E-12 1.2E-16 106.1 5.4 72 456-528 7-94 (107)
169 1v6e_A Cytoskeleton-associated 99.2 1.1E-11 3.7E-16 100.9 7.5 72 76-147 7-86 (95)
170 1wm3_A Ubiquitin-like protein 99.2 5.5E-11 1.9E-15 91.3 8.8 70 457-526 2-71 (72)
171 2io0_B Small ubiquitin-related 99.2 5E-11 1.7E-15 95.5 8.6 76 305-380 6-81 (91)
172 1t0y_A Tubulin folding cofacto 99.2 4.8E-11 1.7E-15 101.6 8.7 73 76-148 6-86 (122)
173 1t0y_A Tubulin folding cofacto 99.2 4.3E-11 1.5E-15 102.0 8.4 76 151-226 5-88 (122)
174 2kzr_A Ubiquitin thioesterase 99.2 3.5E-11 1.2E-15 96.0 6.3 70 457-527 1-76 (86)
175 1wm3_A Ubiquitin-like protein 99.2 7.9E-11 2.7E-15 90.4 7.9 70 305-374 2-71 (72)
176 3a4r_A Nfatc2-interacting prot 99.1 1.8E-10 6.3E-15 89.9 9.3 73 454-526 5-78 (79)
177 2kzr_A Ubiquitin thioesterase 99.1 4.2E-11 1.4E-15 95.5 5.3 71 77-148 1-77 (86)
178 2d07_B Ubiquitin-like protein 99.1 2.2E-10 7.4E-15 92.4 8.4 78 75-152 16-93 (93)
179 3shq_A UBLCP1; phosphatase, hy 99.1 7E-11 2.4E-15 117.3 6.6 76 75-151 4-82 (320)
180 1wz0_A Ubiquitin-like protein 99.1 3.1E-10 1E-14 93.2 8.4 78 227-304 23-100 (104)
181 3a4r_A Nfatc2-interacting prot 99.1 3.4E-10 1.2E-14 88.4 8.1 71 304-374 7-78 (79)
182 3shq_A UBLCP1; phosphatase, hy 99.0 1.5E-10 5.1E-15 114.9 6.3 76 152-228 5-83 (320)
183 2eke_C Ubiquitin-like protein 99.0 3.9E-10 1.3E-14 92.6 7.7 74 305-379 32-105 (106)
184 2k8h_A Small ubiquitin protein 99.0 2.9E-10 1E-14 94.0 6.5 80 75-154 25-104 (110)
185 1wjn_A Tubulin-folding protein 98.9 3.8E-09 1.3E-13 86.1 9.1 71 457-527 10-91 (97)
186 3kyd_D Small ubiquitin-related 98.9 7.2E-09 2.5E-13 85.8 10.0 78 454-531 38-115 (115)
187 3pge_A SUMO-modified prolifera 98.8 1.3E-08 4.6E-13 92.8 9.2 77 455-532 28-104 (200)
188 1wjn_A Tubulin-folding protein 98.8 1.5E-08 5E-13 82.6 8.2 72 77-148 10-92 (97)
189 3tix_A Ubiquitin-like protein 98.8 1.1E-08 3.7E-13 91.0 7.3 77 455-532 56-132 (207)
190 2ylm_A Ubiquitin carboxyl-term 98.7 5.3E-06 1.8E-10 88.0 28.5 346 165-511 38-502 (530)
191 3kyd_D Small ubiquitin-related 98.7 7.4E-08 2.5E-12 79.7 9.2 73 228-300 40-112 (115)
192 3v7o_A Minor nucleoprotein VP3 98.7 3E-09 1E-13 95.8 0.3 79 454-533 19-97 (227)
193 2ylm_A Ubiquitin carboxyl-term 98.5 2.8E-05 9.4E-10 82.6 26.3 331 11-343 36-479 (530)
194 3pge_A SUMO-modified prolifera 98.5 4.9E-07 1.7E-11 82.5 11.0 100 226-327 27-130 (200)
195 3tix_A Ubiquitin-like protein 98.5 2.3E-07 8E-12 82.5 7.0 78 227-305 56-133 (207)
196 3goe_A DNA repair protein RAD6 98.4 1.9E-06 6.6E-11 64.5 9.6 69 459-527 12-81 (82)
197 3ivf_A Talin-1; FERM domain, c 98.4 1.1E-05 3.8E-10 82.1 17.5 135 314-452 12-167 (371)
198 2pjh_A Protein NPL4, nuclear p 98.3 4.4E-07 1.5E-11 70.7 3.8 71 455-526 3-78 (80)
199 3v7o_A Minor nucleoprotein VP3 98.3 1E-07 3.5E-12 86.0 0.1 80 225-305 18-97 (227)
200 2jxx_A Nfatc2-interacting prot 98.2 7.2E-06 2.5E-10 65.8 8.8 73 454-526 23-96 (97)
201 3ix6_A TS, tsase, thymidylate 98.2 2.4E-07 8.1E-12 91.9 0.2 79 454-533 19-97 (360)
202 2al3_A TUG long isoform; TUG U 98.1 4.2E-06 1.4E-10 65.3 6.4 76 303-378 8-83 (90)
203 2pjh_A Protein NPL4, nuclear p 98.1 1.6E-06 5.6E-11 67.4 3.8 71 75-146 3-78 (80)
204 3uf8_A Ubiquitin-like protein 98.1 7.2E-06 2.5E-10 76.3 8.5 79 453-532 18-96 (209)
205 4efo_A Serine/threonine-protei 98.1 1.1E-05 3.9E-10 63.9 7.7 56 6-61 19-76 (94)
206 3goe_A DNA repair protein RAD6 98.1 2.2E-05 7.5E-10 58.8 8.6 71 77-147 10-81 (82)
207 2kc2_A Talin-1, F1; FERM, adhe 98.0 5.6E-06 1.9E-10 69.7 5.9 71 306-376 13-122 (128)
208 3ivf_A Talin-1; FERM domain, c 98.0 0.00016 5.5E-09 73.5 17.0 134 238-374 12-165 (371)
209 4efo_A Serine/threonine-protei 97.9 2.3E-05 7.7E-10 62.1 7.2 63 83-145 20-85 (94)
210 2jxx_A Nfatc2-interacting prot 97.9 3.5E-05 1.2E-09 61.9 8.4 70 229-298 26-96 (97)
211 3uf8_A Ubiquitin-like protein 97.9 5.6E-05 1.9E-09 70.2 10.1 93 225-319 18-110 (209)
212 2l76_A Nfatc2-interacting prot 97.9 6.7E-05 2.3E-09 59.1 8.7 72 455-527 20-91 (95)
213 3ix6_A TS, tsase, thymidylate 97.8 1.8E-06 6E-11 85.6 -1.0 84 225-309 18-101 (360)
214 2kc2_A Talin-1, F1; FERM, adhe 97.7 6E-05 2.1E-09 63.4 6.2 71 382-452 13-122 (128)
215 4da1_A Protein phosphatase 1K, 97.6 1.1E-05 3.6E-10 82.8 0.0 76 456-532 30-105 (389)
216 2al3_A TUG long isoform; TUG U 97.5 0.0002 6.8E-09 55.9 6.8 76 150-225 7-82 (90)
217 2l76_A Nfatc2-interacting prot 97.5 0.00028 9.6E-09 55.5 7.6 70 229-299 22-91 (95)
218 4da1_A Protein phosphatase 1K, 97.2 4.5E-05 1.5E-09 78.1 0.0 80 229-309 31-110 (389)
219 2bps_A YUKD protein; ubiquitin 97.0 0.0019 6.6E-08 49.6 6.7 62 464-525 14-80 (81)
220 2bps_A YUKD protein; ubiquitin 96.9 0.0026 8.9E-08 48.9 6.8 63 311-373 13-80 (81)
221 3qx1_A FAS-associated factor 1 96.8 0.0052 1.8E-07 47.9 8.6 72 455-527 6-82 (84)
222 3qx1_A FAS-associated factor 1 96.4 0.014 4.6E-07 45.5 8.2 69 77-146 8-81 (84)
223 2dzk_A UBX domain-containing p 95.6 0.053 1.8E-06 44.3 8.5 74 455-528 12-90 (109)
224 2dzk_A UBX domain-containing p 95.4 0.075 2.6E-06 43.5 8.8 72 76-147 13-89 (109)
225 2daj_A KIAA0977 protein, COBL- 95.4 0.024 8.3E-07 43.0 5.2 65 455-519 9-76 (91)
226 1wj4_A KIAA0794 protein; UBX d 95.2 0.051 1.8E-06 45.5 7.3 72 455-527 42-118 (124)
227 1wj4_A KIAA0794 protein; UBX d 95.2 0.067 2.3E-06 44.8 8.0 71 75-146 42-117 (124)
228 1ryj_A Unknown; beta/alpha pro 94.2 0.4 1.4E-05 35.5 9.4 67 456-532 4-70 (70)
229 2juo_A GA-binding protein alph 94.1 0.28 9.6E-06 37.1 8.0 58 241-298 5-62 (89)
230 2r2o_A Plexin-B1; effector dom 94.0 0.16 5.6E-06 42.6 7.4 65 314-378 40-130 (138)
231 4e71_A Plexin-B2, MM1; transme 93.9 0.29 9.9E-06 39.7 8.4 63 466-528 23-110 (111)
232 2cr5_A Reproduction 8; UBX dom 93.7 0.24 8.1E-06 40.4 7.9 71 456-527 23-97 (109)
233 4e71_A Plexin-B2, MM1; transme 93.7 0.21 7.3E-06 40.5 7.3 62 162-223 23-109 (111)
234 2cr5_A Reproduction 8; UBX dom 93.2 0.24 8.2E-06 40.4 7.2 71 76-147 23-97 (109)
235 1s3s_G P47 protein; AAA ATPase 92.8 0.26 8.7E-06 41.4 6.9 69 455-523 51-123 (127)
236 4a3p_A Ubiquitin carboxyl-term 92.5 0.39 1.3E-05 44.4 8.4 65 468-532 141-212 (217)
237 1s3s_G P47 protein; AAA ATPase 92.2 0.28 9.4E-06 41.2 6.4 69 152-220 52-124 (127)
238 2juo_A GA-binding protein alph 92.1 0.56 1.9E-05 35.5 7.1 60 470-529 6-65 (89)
239 3jyu_A Ubiquitin carboxyl-term 91.9 0.82 2.8E-05 42.6 9.9 64 469-532 154-224 (231)
240 3h6n_A Plexin-D1; structural g 91.6 1.2 3.9E-05 36.9 9.1 65 465-529 15-105 (127)
241 2daj_A KIAA0977 protein, COBL- 91.4 0.38 1.3E-05 36.6 5.5 67 307-376 13-82 (91)
242 4a3p_A Ubiquitin carboxyl-term 91.2 0.38 1.3E-05 44.5 6.7 63 316-378 141-210 (217)
243 2l32_A Small archaeal modifier 91.1 0.47 1.6E-05 35.6 6.0 66 457-532 1-66 (74)
244 3jyu_A Ubiquitin carboxyl-term 90.7 0.51 1.7E-05 44.0 7.2 64 316-379 153-223 (231)
245 3h6n_A Plexin-D1; structural g 90.2 1.2 4.2E-05 36.7 8.1 68 5-72 11-104 (127)
246 4e74_A Plexin-A4; RBD, structu 90.0 0.78 2.7E-05 37.5 6.8 64 390-453 26-115 (117)
247 1tyg_B YJBS; alpha beta barrel 89.2 1.1 3.7E-05 34.8 6.7 68 455-532 19-87 (87)
248 2r2o_A Plexin-B1; effector dom 89.0 1.6 5.3E-05 36.7 7.9 63 467-529 41-129 (138)
249 4e74_A Plexin-A4; RBD, structu 88.9 1.3 4.4E-05 36.2 7.2 63 467-529 27-115 (117)
250 1vjk_A Molybdopterin convertin 87.5 3.7 0.00013 32.3 9.2 73 455-532 8-98 (98)
251 3kuz_A Plexin-C1; structural g 87.4 2.2 7.5E-05 35.1 7.7 61 315-375 39-125 (126)
252 3kuz_A Plexin-C1; structural g 87.3 2.8 9.7E-05 34.5 8.3 61 391-451 39-125 (126)
253 1oey_A P67-PHOX, neutrophil cy 87.3 1.2 4.1E-05 34.1 5.7 48 455-504 4-51 (83)
254 2l32_A Small archaeal modifier 87.0 1.1 3.7E-05 33.6 5.4 66 77-152 1-66 (74)
255 3rpf_C Molybdopterin convertin 86.2 2.7 9.3E-05 31.2 7.3 58 470-532 15-74 (74)
256 2i1j_A Moesin; FERM, coiled-co 86.1 1.8 6.3E-05 46.0 8.6 71 305-376 5-81 (575)
257 1f0z_A THis protein; ubiquitin 85.7 0.99 3.4E-05 32.8 4.5 58 470-532 9-66 (66)
258 1ef1_A Moesin; membrane, FERM 85.2 2.2 7.4E-05 41.1 8.1 69 306-375 3-77 (294)
259 1ryj_A Unknown; beta/alpha pro 84.8 6.4 0.00022 28.8 8.6 62 305-376 5-66 (70)
260 1h4r_A Merlin; FERM, neurofibr 84.6 2.7 9.1E-05 40.9 8.4 70 305-375 23-97 (314)
261 1oey_A P67-PHOX, neutrophil cy 82.9 2.1 7.1E-05 32.8 5.2 46 306-351 5-50 (83)
262 1vjk_A Molybdopterin convertin 81.7 6.6 0.00023 30.8 8.2 72 74-150 7-96 (98)
263 3po0_A Small archaeal modifier 80.3 7 0.00024 30.0 7.8 61 467-532 18-89 (89)
264 2kvr_A Ubiquitin carboxyl-term 80.1 1.6 5.5E-05 36.6 4.1 34 469-502 58-91 (130)
265 1fm0_D Molybdopterin convertin 78.8 4.5 0.00015 30.4 6.1 59 468-532 18-81 (81)
266 3qij_A Protein 4.1; cytoskelet 78.1 4.2 0.00014 39.2 7.1 70 305-374 18-93 (296)
267 3dwg_C 9.5 kDa culture filtrat 77.9 11 0.00037 29.2 8.2 65 466-532 16-93 (93)
268 3u52_E Phenol hydroxylase comp 76.8 9 0.00031 31.1 7.3 65 468-532 39-113 (119)
269 2kl0_A Putative thiamin biosyn 76.8 3.7 0.00013 30.5 4.9 57 470-532 9-65 (73)
270 2kmc_A Fermitin family homolog 76.2 15 0.00051 28.8 8.1 70 2-71 21-98 (102)
271 3hm6_X Plexin-B1; structural g 75.9 7.9 0.00027 40.7 8.6 65 314-378 273-363 (644)
272 2k5p_A THis protein, thiamine- 74.7 3.2 0.00011 31.3 4.1 58 470-532 9-69 (78)
273 2q5w_D Molybdopterin convertin 74.5 4.8 0.00016 29.9 5.1 59 468-532 17-77 (77)
274 2kvr_A Ubiquitin carboxyl-term 74.0 3.3 0.00011 34.7 4.4 38 11-48 56-93 (130)
275 2cu3_A Unknown function protei 72.6 8.2 0.00028 27.6 5.7 56 471-532 9-64 (64)
276 1ef1_A Moesin; membrane, FERM 72.4 16 0.00055 34.8 9.6 73 456-529 1-79 (294)
277 3rpf_C Molybdopterin convertin 71.7 13 0.00044 27.4 6.9 70 153-227 1-73 (74)
278 1h4r_A Merlin; FERM, neurofibr 70.8 15 0.00052 35.4 9.1 75 454-529 20-99 (314)
279 2kmc_A Fermitin family homolog 70.5 20 0.00069 28.0 7.6 71 382-452 21-99 (102)
280 1vd2_A Protein kinase C, IOTA 68.9 11 0.00039 29.0 6.0 46 307-352 7-54 (89)
281 3ig3_A Plxna3 protein; plexin 68.4 16 0.00054 38.4 8.8 65 390-454 246-336 (627)
282 3ig3_A Plxna3 protein; plexin 68.4 21 0.00072 37.5 9.7 63 467-529 247-335 (627)
283 1vd2_A Protein kinase C, IOTA 68.0 19 0.00064 27.8 7.1 47 457-504 7-54 (89)
284 3po0_A Small archaeal modifier 65.5 20 0.00068 27.3 7.0 57 239-300 18-85 (89)
285 1fm0_D Molybdopterin convertin 65.1 13 0.00043 27.8 5.7 55 240-300 18-77 (81)
286 2g1e_A Hypothetical protein TA 63.4 24 0.00082 26.7 7.2 62 470-532 18-90 (90)
287 3hm6_X Plexin-B1; structural g 63.0 19 0.00065 37.9 8.1 63 467-529 274-362 (644)
288 2i1j_A Moesin; FERM, coiled-co 62.2 26 0.0009 37.0 9.4 74 455-529 3-82 (575)
289 4eut_A Serine/threonine-protei 60.7 27 0.00093 34.6 8.9 43 7-49 318-360 (396)
290 1wgk_A Riken cDNA 2900073H19 p 60.2 52 0.0018 26.5 8.8 74 76-152 11-108 (114)
291 1rws_A Hypothetical protein PF 60.1 2.8 9.7E-05 31.4 1.1 54 470-532 24-77 (77)
292 1y8x_B Ubiquitin-activating en 59.5 24 0.00082 27.7 6.4 59 468-526 6-82 (98)
293 2inc_C TOUB protein; DIIRON, 4 56.9 60 0.0021 24.4 8.9 61 468-528 14-82 (83)
294 3dwg_C 9.5 kDa culture filtrat 56.0 55 0.0019 25.0 8.1 59 242-302 20-91 (93)
295 3qa8_A MGC80376 protein; kinas 55.4 9.7 0.00033 41.2 4.7 51 465-515 320-371 (676)
296 3qij_A Protein 4.1; cytoskelet 54.2 37 0.0012 32.4 8.2 75 454-528 15-95 (296)
297 2k9x_A Tburm1, uncharacterized 53.9 11 0.00036 30.5 3.5 66 162-229 20-103 (110)
298 1wgk_A Riken cDNA 2900073H19 p 53.0 66 0.0022 25.9 8.3 75 456-532 11-108 (114)
299 1wgr_A Growth factor receptor- 52.7 30 0.001 27.3 5.9 39 381-419 10-48 (100)
300 1wgr_A Growth factor receptor- 52.2 29 0.001 27.3 5.8 60 75-134 8-74 (100)
301 2qjl_A URM1, ubiquitin-related 51.3 68 0.0023 24.9 8.0 34 77-110 2-45 (99)
302 2cu3_A Unknown function protei 50.6 25 0.00085 24.9 4.8 58 311-376 3-60 (64)
303 2q5w_D Molybdopterin convertin 50.5 23 0.00078 26.0 4.8 56 239-300 16-73 (77)
304 1tyg_B YJBS; alpha beta barrel 49.9 44 0.0015 25.5 6.4 57 237-300 26-83 (87)
305 2kmm_A Guanosine-3',5'-BIS(dip 47.5 49 0.0017 23.7 6.2 62 305-375 1-62 (73)
306 1ip9_A BEM1 protein; ubiquitin 46.2 64 0.0022 24.5 6.5 37 75-112 11-47 (85)
307 1ip9_A BEM1 protein; ubiquitin 45.5 48 0.0016 25.2 5.7 42 456-500 12-53 (85)
308 2lgx_A Fermitin family homolog 45.2 18 0.0006 28.8 3.4 69 2-71 28-101 (112)
309 2k9x_A Tburm1, uncharacterized 45.1 19 0.00066 29.0 3.8 75 228-304 4-102 (110)
310 4eut_A Serine/threonine-protei 44.1 73 0.0025 31.3 9.0 52 85-136 320-373 (396)
311 2kmm_A Guanosine-3',5'-BIS(dip 44.0 30 0.001 25.0 4.5 49 1-53 1-49 (73)
312 1wgy_A RAP guanine nucleotide 43.5 66 0.0023 25.5 6.5 70 79-148 12-86 (104)
313 3ge3_C Toluene-4-monooxygenase 43.4 1E+02 0.0035 23.2 7.3 60 468-527 16-82 (84)
314 1wgy_A RAP guanine nucleotide 43.3 74 0.0025 25.2 6.8 66 388-453 17-87 (104)
315 2inc_C TOUB protein; DIIRON, 4 43.3 1E+02 0.0034 23.2 7.1 59 89-147 15-81 (83)
316 2kl0_A Putative thiamin biosyn 43.2 21 0.00071 26.3 3.5 58 312-377 5-62 (73)
317 3onh_A Ubiquitin-activating en 43.0 51 0.0018 27.1 6.0 51 475-526 18-77 (127)
318 3qa8_A MGC80376 protein; kinas 42.2 21 0.00072 38.6 4.7 54 311-364 318-372 (676)
319 2g1e_A Hypothetical protein TA 41.2 75 0.0026 23.8 6.7 56 244-300 20-86 (90)
320 2qjl_A URM1, ubiquitin-related 41.1 1.1E+02 0.0037 23.7 7.7 65 467-532 20-99 (99)
321 1q1o_A Cell division control p 38.6 48 0.0017 26.0 5.0 39 75-113 4-49 (98)
322 1lfd_A Ralgds; RAL, effector i 37.8 1E+02 0.0035 23.4 6.5 68 2-72 7-85 (87)
323 2j58_A WZA, outer membrane lip 37.1 3E+02 0.01 26.8 15.6 176 209-411 63-266 (359)
324 3au4_A Myosin-X; protein-prote 35.4 54 0.0018 34.4 6.5 56 306-361 218-279 (555)
325 1f0z_A THis protein; ubiquitin 34.8 52 0.0018 23.3 4.5 57 237-300 6-62 (66)
326 2lgx_A Fermitin family homolog 34.0 14 0.00048 29.3 1.2 68 458-526 28-100 (112)
327 3hvz_A Uncharacterized protein 33.5 45 0.0016 24.9 4.0 60 306-374 7-66 (78)
328 1j0g_A Hypothetical protein 18 32.6 1.4E+02 0.0047 22.3 6.2 64 469-532 26-90 (92)
329 3ge3_C Toluene-4-monooxygenase 31.8 1.2E+02 0.0041 22.8 5.9 59 89-147 17-82 (84)
330 1rax_A Protein (RA-domain of R 31.1 90 0.0031 25.0 5.4 70 2-74 32-112 (115)
331 1pqs_A Cell division control p 30.8 35 0.0012 25.4 3.0 27 315-341 2-28 (77)
332 1rws_A Hypothetical protein PF 30.6 21 0.00072 26.5 1.7 48 243-299 25-72 (77)
333 2l52_A Methanosarcina acetivor 30.1 93 0.0032 24.1 5.6 60 471-532 23-99 (99)
334 1c1y_B Proto-onkogene serine/t 28.9 1E+02 0.0034 23.0 5.0 38 3-40 4-41 (77)
335 2v1y_A Phosphatidylinositol-4, 28.7 75 0.0026 25.4 4.7 32 382-413 21-52 (108)
336 4eku_A Protein-tyrosine kinase 28.1 51 0.0017 32.9 4.5 51 312-362 35-96 (392)
337 1q1o_A Cell division control p 27.8 50 0.0017 25.9 3.4 39 151-189 4-49 (98)
338 3kh0_A Ralgds, ralgef, RAL gua 27.2 2.1E+02 0.0072 23.7 7.2 75 2-76 29-111 (140)
339 2l52_A Methanosarcina acetivor 26.9 2.1E+02 0.0073 21.9 7.2 52 248-300 27-95 (99)
340 3onh_A Ubiquitin-activating en 25.9 1.2E+02 0.004 24.9 5.4 51 173-224 20-79 (127)
341 3au4_A Myosin-X; protein-prote 25.0 1.4E+02 0.0047 31.1 7.5 48 455-502 215-264 (555)
342 2v1y_A Phosphatidylinositol-4, 24.7 76 0.0026 25.3 4.0 67 307-374 22-102 (108)
343 2al6_A Focal adhesion kinase 1 24.3 56 0.0019 32.3 4.0 53 311-363 14-77 (375)
344 1wxm_A A-RAF proto-oncogene se 24.1 1.2E+02 0.0042 23.0 4.9 38 3-40 10-47 (86)
345 2ddz_A 190AA long hypothetical 23.9 1.4E+02 0.0047 26.2 5.8 98 268-385 11-136 (190)
346 1y8x_B Ubiquitin-activating en 23.7 93 0.0032 24.3 4.3 58 240-297 6-81 (98)
347 2eki_A DRG 1, developmentally- 23.5 63 0.0022 25.0 3.3 57 319-376 29-87 (93)
348 1v8c_A MOAD related protein; r 23.5 1.2E+02 0.004 26.3 5.5 61 470-532 17-87 (168)
349 2eel_A Cell death activator CI 23.2 86 0.0029 24.2 3.9 51 325-378 28-80 (91)
350 3pvl_A Myosin VIIA isoform 1; 23.1 1.1E+02 0.0036 32.9 6.1 45 305-349 264-309 (655)
351 4gmv_A RAS-associated and plec 22.9 1.5E+02 0.0051 28.0 6.5 58 77-134 32-96 (281)
352 2l05_A Serine/threonine-protei 22.7 1.4E+02 0.005 23.0 5.1 38 3-40 20-57 (95)
353 2hj1_A Hypothetical protein; s 22.1 2.1E+02 0.007 22.2 6.1 69 456-529 12-86 (97)
354 3tca_A Amyloid beta A4 precurs 21.1 1.6E+02 0.0054 27.4 6.4 43 3-45 37-79 (291)
355 3h9d_A ATG8, microtubule-assoc 20.8 1.5E+02 0.005 24.1 5.1 58 470-527 51-112 (119)
356 4gmv_A RAS-associated and plec 20.4 1.2E+02 0.0042 28.6 5.3 40 7-46 38-77 (281)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.6e-34 Score=261.38 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.4
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEE-E-ccEEccCCCCcccccccccccceEEEE-ecCCe
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~-~-~g~~L~d~~~l~~y~i~~~sti~l~~~-~~~~m 77 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ .+++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecce
Q 009480 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~ 153 (533)
+|+||+++|+.++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++||-
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998873
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=5.3e-34 Score=258.02 Aligned_cols=154 Identities=34% Similarity=0.504 Sum_probs=147.2
Q ss_pred CeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe-e-cCeeccCCccccccccccCCeEEEEEE-ecCC
Q 009480 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 456 (533)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~-~-~g~~l~d~~tL~~~~i~~~~~l~l~~~-~~~~ 456 (533)
+|.|+||+++|+++++++++++||.+||++|++++|+|+++|+|. | +|+.|+|+.+|++|++.+|++++|+.+ .+++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 378999999999999999999999999999999999999999999 9 799999999999999999999999998 4889
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999993
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=9e-34 Score=259.70 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecCCeEEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~~m~i~ 80 (533)
|+|||++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|++.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=256.74 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.8
Q ss_pred cCCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEeecCeeccCCccccccccccCCeEEEEEEecCCe
Q 009480 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 457 (533)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~tL~~~~i~~~~~l~l~~~~~~~m 457 (533)
...|+|+||+++|+++++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|+|..+++++|+.+....|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+++|++.+|+++.++|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|+|||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.98 E-value=6.8e-32 Score=242.40 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.7
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecCCeEEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~~m~i~ 80 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+..++|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|++++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.98 E-value=2.1e-31 Score=239.18 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.4
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEeecCeeccCCccccccccccCCeEEEEEEecCCeeeE
Q 009480 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 460 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~tL~~~~i~~~~~l~l~~~~~~~m~i~ 460 (533)
|.|+|++++|+.+++++++++||.+||++|++++|+|+++|+|.|+|..|+|+.+|++|++.+++++++..+....|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|++.+|+.+.+++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=138.37 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=75.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~G 531 (533)
++|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.8e-20 Score=153.84 Aligned_cols=103 Identities=74% Similarity=0.991 Sum_probs=98.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeeccee
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 154 (533)
+..+|+|++++|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||++
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeee---ecccceEEEeecCCchHHH
Q 009480 155 IFVK---TLTGKTITLEVESSDTIDN 177 (533)
Q Consensus 155 i~vk---~~~g~~~~i~v~~~~tV~~ 177 (533)
++++ ...|++++++|.+++||.+
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 88 GGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeccccccccCceEEEEeccccccCC
Confidence 9998 5679999999999999863
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.76 E-value=1.5e-18 Score=137.53 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.2
Q ss_pred EEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 449 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 449 l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
|+...++.|+|||++..|+++.++|.|++||.+||++|++++|+||++|+|+|+|++|+|+.||++|+|++|+||+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4556678899999999999999999999999999999999999999999999999999999999999999999999863
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=1.5e-18 Score=139.83 Aligned_cols=77 Identities=56% Similarity=0.917 Sum_probs=73.1
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.76 E-value=1.8e-18 Score=137.11 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.1
Q ss_pred EEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 69 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 69 l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
|+.+....|+|+||+++|+.+.++|+|++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|++|++|+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 5556667899999999999999999999999999999999999999999999999999999999999999999999863
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=2.4e-18 Score=135.84 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.7
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.|+|+|++.+|+.+.++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|++|++|++.+|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=5.1e-18 Score=132.82 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++.+|+.+.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=3.7e-18 Score=137.76 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=77.0
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..+|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.1e-19 Score=151.82 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=98.0
Q ss_pred ecceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEecCCe
Q 009480 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (533)
Q Consensus 150 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~~~~ 229 (533)
.|.++|+|++++|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.++++|.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEE---cCCCCeEEEEeecCCcHHH
Q 009480 230 QIFVK---TLTGKTITLEVESSDTIDN 253 (533)
Q Consensus 230 ~i~V~---~~~g~~i~~~v~~~~tV~~ 253 (533)
+++++ +.+|++++++|++++||++
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99988 4578999999999998864
No 16
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.73 E-value=5.1e-18 Score=139.20 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=77.0
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|+|++.+|+.+.++|.+++||.+||.+|+++.|+|+++|+|+|+|++|+|+.||++|+|++|++|+|.+|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 17
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.5e-18 Score=138.97 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=76.0
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=135.48 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=72.3
Q ss_pred cccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCC
Q 009480 441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 520 (533)
Q Consensus 441 i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~ 520 (533)
..+++++++..+.+..|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45677888888888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CEEEEEEe
Q 009480 521 STLHLVLR 528 (533)
Q Consensus 521 ~tl~l~~r 528 (533)
++|||++|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999986
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.2e-17 Score=134.50 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=77.4
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
+..|+|+|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.+|++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999993
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=1.4e-17 Score=130.30 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|+..+|+.+.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=132.29 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=74.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeec
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
..|+|+||+++|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998765
No 22
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=9.9e-18 Score=134.98 Aligned_cols=78 Identities=86% Similarity=1.263 Sum_probs=70.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|++++.+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=9.2e-18 Score=134.45 Aligned_cols=78 Identities=78% Similarity=1.132 Sum_probs=73.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|+|++.+|+++.++|++++||++||++|++.+++|+++|+|+|+|+.|+|+.||++|+|+++++|+|.+|++||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=134.84 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.7
Q ss_pred ccccccceEEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCcccccccccc
Q 009480 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (533)
Q Consensus 61 i~~~sti~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~ 140 (533)
...++++|+..+....|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 34577889988888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CceeEEEE
Q 009480 141 STLHLVLR 148 (533)
Q Consensus 141 s~i~l~~~ 148 (533)
++|||+.+
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.1e-17 Score=132.27 Aligned_cols=78 Identities=90% Similarity=1.218 Sum_probs=75.8
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+|+|+|++.+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|.+|++||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999998
No 26
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=2.4e-17 Score=135.21 Aligned_cols=78 Identities=94% Similarity=1.262 Sum_probs=74.1
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
.|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999994
No 27
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=135.60 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=72.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...|+|+|++ |+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4679999998 8999999999999999999999999999999999999999999999999999999999999999998
No 28
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=2.5e-17 Score=134.03 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=75.4
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...|+|+|++..| ++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 5679999999888 899999999999999999999999999999999999999999 99999999999999999999998
No 29
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.71 E-value=1.3e-17 Score=134.23 Aligned_cols=78 Identities=55% Similarity=0.908 Sum_probs=72.9
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeeccee
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 154 (533)
|+|+||+++|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998864
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=133.82 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=72.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|..|++||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.71 E-value=3.8e-17 Score=137.36 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 32
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.1e-17 Score=131.31 Aligned_cols=79 Identities=37% Similarity=0.617 Sum_probs=76.0
Q ss_pred CCeeeEEEeCCC-CEEEE-EecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g-~~~~~-~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|+|++.+| +.+.+ +|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 79999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 009480 533 F 533 (533)
Q Consensus 533 ~ 533 (533)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 33
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.70 E-value=2.8e-17 Score=135.26 Aligned_cols=92 Identities=82% Similarity=1.095 Sum_probs=74.8
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecceeee
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~i~ 156 (533)
|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..+++||.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccceEEEe
Q 009480 157 VKTLTGKTITLE 168 (533)
Q Consensus 157 vk~~~g~~~~i~ 168 (533)
+++.+|+.-.++
T Consensus 81 ~~~v~~~~~~~~ 92 (98)
T 1yx5_B 81 SSSVDKLAAALE 92 (98)
T ss_dssp ------------
T ss_pred cccCCCchhhhh
Confidence 999887764443
No 34
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=137.98 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+|.+|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999998
No 35
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.2e-17 Score=133.87 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~ 70 (533)
|+|||++++|++++++|.|+|||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 36
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.4e-17 Score=131.40 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEec--CcccHHHHHHHH-HhhhCCCCccceEEEccEEccCCCCcccccc-cccccceEEEEe
Q 009480 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~ik~ki-~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i-~~~sti~l~~~~ 73 (533)
|+|||++++|++++++|+ ++|||.++|++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 799999998865
No 37
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=7.2e-17 Score=130.92 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.7
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~ 530 (533)
...|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999986
No 38
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=4.9e-17 Score=129.39 Aligned_cols=75 Identities=32% Similarity=0.456 Sum_probs=72.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCcc-ccCCCccccccccccCceeEEEEe
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~-L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
.-|+|+|++++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+. |+|+.+|++|+|.+|++|+|++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 469999999999999999999999999999999999999999999999999 999999999999999999998764
No 39
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=4.5e-17 Score=129.59 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEE-ccCCCCcccccccccccceEEEEe
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~-L~d~~~l~~y~i~~~sti~l~~~~ 73 (533)
|+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998753
No 40
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.69 E-value=9.5e-17 Score=129.98 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|+|++.+|+.+.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++|+|++|+.++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999 89999999999876
No 41
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=8.9e-17 Score=132.26 Aligned_cols=92 Identities=82% Similarity=1.095 Sum_probs=75.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecCCeEEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~~m~i~ 80 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEE
Q 009480 81 VKTLTGKTITLE 92 (533)
Q Consensus 81 vk~~~g~~~~l~ 92 (533)
.++.+|+.-.++
T Consensus 81 ~~~v~~~~~~~~ 92 (98)
T 1yx5_B 81 SSSVDKLAAALE 92 (98)
T ss_dssp ------------
T ss_pred cccCCCchhhhh
Confidence 999887754443
No 42
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=3.9e-17 Score=132.36 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=70.1
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEE
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
..|+|+||+++|++++++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++++|+|..
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 3499999999999999999999999999999999999999999999999999999999999999999999863
No 43
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.4e-17 Score=130.50 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.6
Q ss_pred eEEEEEecCCcEEEEEEc--CCCcHHHHHHHH-hhhhCCCCCCeEEEecCccccCCCccccccc-cccCceeEEEEe
Q 009480 77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i-~~~s~i~l~~~~ 149 (533)
|+|+||+++|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|+|..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988866 999999999999 9999999999999999999999999999999 799999998875
No 44
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.67 E-value=7.1e-17 Score=134.60 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=68.9
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCC-------CCCEEEEEEe
Q 009480 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~-------~~~tl~l~~r 528 (533)
|++|++...++ ++.++|.+++||++||++|++++|||+++|||+|+|+.|+|++||++|||+ .++||+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 66777766665 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 009480 529 LRGG 532 (533)
Q Consensus 529 l~GG 532 (533)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 665
No 45
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.67 E-value=6.2e-17 Score=127.67 Aligned_cols=78 Identities=18% Similarity=0.417 Sum_probs=74.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++++|+++++.+||
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 358999999999999999999999999999999999999999999999999999999999999999999999988775
No 46
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.67 E-value=7.4e-17 Score=130.04 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=75.8
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999988775
No 47
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=129.16 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=72.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.++++|
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999988776
No 48
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=1.8e-16 Score=143.21 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=74.2
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||.+|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999994
No 49
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.67 E-value=1e-16 Score=132.92 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=71.1
Q ss_pred CeEEEEcCCCc-EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccc-------cccceEEEE
Q 009480 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~-------~sti~l~~~ 72 (533)
|.+|++...++ +++++|+++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.+ ++++||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999987 8889999999999999999999999999999999999999999999999999 999999987
Q ss_pred ec
Q 009480 73 LR 74 (533)
Q Consensus 73 ~~ 74 (533)
..
T Consensus 81 ~~ 82 (118)
T 4ajy_B 81 AD 82 (118)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 50
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.67 E-value=8.7e-17 Score=134.09 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=69.4
Q ss_pred CeEEEEcCCCc-EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCccccccc-------ccccceEEEE
Q 009480 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~-------~~sti~l~~~ 72 (533)
|+||++...|+ +++++|+++|||.+||++|++++|||+++|+|+|+|+.|+|+++|++|+|. ..+++||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999996 699999999999999999999999999999999999999999999999999 7999999987
No 51
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.67 E-value=1.4e-16 Score=124.64 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988775
No 52
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.2e-16 Score=128.65 Aligned_cols=78 Identities=86% Similarity=1.263 Sum_probs=70.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
.+|+|+|++++|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++++||
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999998876
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.6e-16 Score=125.03 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.2
Q ss_pred CCeEEEEEecCCcEE-EEE-EcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 75 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
+.|+|+||+.+|+.+ .++ |++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 479999999999985 999 999999999999999999999999999999999999999999999999999998875
No 54
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=123.79 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.4
Q ss_pred CCeeeEEEeCCCCEE-EEE-ecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 455 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~-~~~-v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
+.|+|+|++.+|+.+ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|.+|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999999999885 999 999999999999999999999999999999999999999999999999999999986
No 55
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=1.5e-16 Score=133.84 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=76.4
Q ss_pred cCCeeeEEEeC---CCCEEEEEecC-CCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 454 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 454 ~~~m~i~v~~~---~g~~~~~~v~~-~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
+.+|+|+|++. +|+.+.++|++ ++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 56899999998 88999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 009480 530 RGG 532 (533)
Q Consensus 530 ~GG 532 (533)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 999
No 56
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-16 Score=131.14 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=75.0
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998875
No 57
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=127.03 Aligned_cols=80 Identities=34% Similarity=0.524 Sum_probs=76.6
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecce
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~ 153 (533)
+..|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999988873
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.66 E-value=2.2e-16 Score=130.88 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=70.7
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCC-------CCEEEEEEe
Q 009480 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~-------~~tl~l~~r 528 (533)
|.+|++...++ ++.+++.+++||.+||.+|+.++|+|+++|||+|+|+.|+|++||++|||++ ++||+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 67888876666 6788999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCC
Q 009480 529 LRGGF 533 (533)
Q Consensus 529 l~GG~ 533 (533)
..|+|
T Consensus 81 ~~~~f 85 (118)
T 4ajy_B 81 ADDTF 85 (118)
T ss_dssp CSSCC
T ss_pred cCCCc
Confidence 85543
No 59
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.66 E-value=1.2e-16 Score=131.06 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=75.8
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+++|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++++|+|+++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999988775
No 60
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=1.7e-16 Score=129.09 Aligned_cols=79 Identities=27% Similarity=0.416 Sum_probs=75.2
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCC-CccccccccccCceeEEEEeec
Q 009480 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 73 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
....|+|+||+++| .+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|+|+++++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 46789999999988 899999999999999999999999999999999999999999 9999999999999999999887
Q ss_pred c
Q 009480 152 G 152 (533)
Q Consensus 152 ~ 152 (533)
|
T Consensus 91 g 91 (94)
T 2kan_A 91 R 91 (94)
T ss_dssp S
T ss_pred C
Confidence 6
No 61
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.65 E-value=2.2e-16 Score=127.81 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=73.4
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|++|||+++++++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999 89999999987654
No 62
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.1e-16 Score=128.62 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=73.8
Q ss_pred CCeeeEEEeCCCC--EEEEEecCCCcHHHHHHHHhhhc--CCCCCcEEEEEcCeecCCCCccccc--CCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~--~~~~~v~~~~tV~~LK~~I~~~~--gip~~~q~L~~~g~~L~d~~tL~~~--~I~~~~tl~l~~r 528 (533)
..|+|+|++.+|+ .+.+++++++||++||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|+++++|||++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 5699999999888 67777889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred cCCC
Q 009480 529 LRGG 532 (533)
Q Consensus 529 l~GG 532 (533)
++||
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9998
No 63
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.65 E-value=2.2e-16 Score=129.46 Aligned_cols=81 Identities=90% Similarity=1.223 Sum_probs=74.0
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecceee
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 155 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~i 155 (533)
+|+|+||+++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||...
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred e
Q 009480 156 F 156 (533)
Q Consensus 156 ~ 156 (533)
.
T Consensus 81 ~ 81 (96)
T 3k9o_B 81 R 81 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 64
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.65 E-value=2.3e-16 Score=127.96 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=73.6
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
...|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999988753
No 65
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.46 E-value=8.9e-18 Score=131.52 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.5
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~G 531 (533)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|+||
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998
No 66
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.9e-16 Score=126.76 Aligned_cols=77 Identities=79% Similarity=1.145 Sum_probs=72.7
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
.|+|+||+++|+++.++|++++||.+||++|+++.++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998876
No 67
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.65 E-value=3.1e-16 Score=122.58 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.6
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988775
No 68
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=3.8e-16 Score=124.92 Aligned_cols=77 Identities=91% Similarity=1.232 Sum_probs=74.6
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
.|+|+|++.+|+.+.++|++++||.+||++|+++.++|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988775
No 69
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.64 E-value=4.2e-16 Score=140.85 Aligned_cols=125 Identities=66% Similarity=0.878 Sum_probs=95.9
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecceeee
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~i~ 156 (533)
|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++||..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred eeecc-cc--eEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCC
Q 009480 157 VKTLT-GK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204 (533)
Q Consensus 157 vk~~~-g~--~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d 204 (533)
|+... |. +-.+.+.++.++.+-.+.+.-.. .+..++.|+-+-|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~---~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM---DQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE---SSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccceEEec---CCcceEEEhHHHHHH
Confidence 77653 32 33555655555432222221111 123466666665554
No 70
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.64 E-value=4.1e-16 Score=127.04 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=69.9
Q ss_pred cCCeEEEEEecCCcEEEE--EEcCCCcHHHHHHHH-hhhhCCCCCCeEEEecCccccCCCccccccc-cccCceeEEEEe
Q 009480 74 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i-~~~s~i~l~~~~ 149 (533)
...|+|+||+++|+.+++ +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|+|+++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 467999999999998777 566999999999999 8889999999999999999999999999999 999999998864
No 71
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.7e-16 Score=122.29 Aligned_cols=77 Identities=39% Similarity=0.674 Sum_probs=73.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~ 530 (533)
+..|+|+|+..+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+|.+|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999874
No 72
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=5.8e-16 Score=125.02 Aligned_cols=79 Identities=37% Similarity=0.622 Sum_probs=75.1
Q ss_pred CCeEEEEEecCC-cEEEE-EEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+++| +.+.+ +|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 79999 5999999999999999999999999999999999999999999999999999999998877
Q ss_pred e
Q 009480 153 M 153 (533)
Q Consensus 153 ~ 153 (533)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 73
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.63 E-value=3.7e-16 Score=142.54 Aligned_cols=79 Identities=92% Similarity=1.253 Sum_probs=76.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.-.|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|++|++||
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999999
No 74
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.63 E-value=6.5e-16 Score=129.83 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 75
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=7.3e-16 Score=126.89 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.7
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|+|+...|+ +.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 46799999999886 7999999999999999999999999999999999999999999999999999999999999997
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.63 E-value=3.1e-16 Score=143.00 Aligned_cols=84 Identities=90% Similarity=1.224 Sum_probs=81.2
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecceee
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 155 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~i 155 (533)
.|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||..+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQT 184 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeee
Q 009480 156 FVKT 159 (533)
Q Consensus 156 ~vk~ 159 (533)
+||.
T Consensus 185 fvk~ 188 (189)
T 3q3f_A 185 FTKI 188 (189)
T ss_dssp CCCC
T ss_pred eEec
Confidence 8863
No 77
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=9.3e-16 Score=129.39 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=73.8
Q ss_pred cCCeeeEEEeCCCCEE-EEEecCCCcHHHHHHHH-----hhhcCCCC--CcEEEEEcCeecCCCCcccccCCCCC-----
Q 009480 454 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE----- 520 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~-~~~v~~~~tV~~LK~~I-----~~~~gip~--~~q~L~~~g~~L~d~~tL~~~~I~~~----- 520 (533)
...|+|++++.+|+.+ .+++++++||++||++| ++.+|+|+ ++|+|+|+|+.|+|+.||++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4689999999999888 79999999999999999 56778997 89999999999999999999999998
Q ss_pred -CEEEEEEecCCC
Q 009480 521 -STLHLVLRLRGG 532 (533)
Q Consensus 521 -~tl~l~~rl~GG 532 (533)
+|+||++|++||
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999999997
No 78
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=5.7e-16 Score=130.70 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=74.4
Q ss_pred eEEEEecCCeEEEEEecCCcEE-EEEEcCCCcHHHHHHHH-----hhhhCCCC--CCeEEEecCccccCCCccccccccc
Q 009480 68 HLVLRLRGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQK 139 (533)
Q Consensus 68 ~l~~~~~~~m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~q~L~~~g~~L~d~~~L~~y~i~~ 139 (533)
||.....+.|+|+||+++|+.+ ++++++++||.+||++| ++++|+|+ ++|+|+|+||.|+|+.||++|+|.+
T Consensus 8 ~~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~ 87 (126)
T 1se9_A 8 HLEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV 87 (126)
T ss_dssp --CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred hhhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence 3333345789999999999988 79999999999999999 56778997 8999999999999999999999999
Q ss_pred c------CceeEEEEeecc
Q 009480 140 E------STLHLVLRLRGG 152 (533)
Q Consensus 140 ~------s~i~l~~~~~~~ 152 (533)
+ +++||+++++++
T Consensus 88 ~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 88 SNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp TSCTTCCEEEEEEECCCSS
T ss_pred CCccCCcEEEEEEeccCCc
Confidence 8 679999988765
No 79
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.62 E-value=1.1e-15 Score=122.18 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=71.5
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhh---hCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
+..|+|+||+.+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 467999999999999999999999999999999998 89999999999999999999999999999999999987653
No 80
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=6.9e-16 Score=125.04 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=63.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
++.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 6789999999999999999999999999999999999999999999999999999999 89999985
No 81
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=126.97 Aligned_cols=78 Identities=37% Similarity=0.629 Sum_probs=71.7
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 73 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
+...|+|+||+ |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 34579999998 8999999999999999999999999999999999999999999999999999999999999998875
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.3e-16 Score=130.08 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=67.5
Q ss_pred CCccccccccccCceeEEEEeecceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCcc
Q 009480 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (533)
Q Consensus 129 ~~~L~~y~i~~~s~i~l~~~~~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl 208 (533)
+.++++|.| +++.++.+.....+.|+|+. +|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 467899998 46677766655567778876 899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEEEE
Q 009480 209 ADYNIQKESTLHLVLR 224 (533)
Q Consensus 209 ~~y~I~~~~~i~l~~~ 224 (533)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999999865
No 83
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=4.3e-16 Score=127.66 Aligned_cols=78 Identities=27% Similarity=0.335 Sum_probs=75.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...|+|+|+.. |+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 35699999998 9999999999999999999999999999999999999999999999999999999999999999998
No 84
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=3.9e-16 Score=128.23 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=73.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC---------------CcEEEEEcCeecC-CCCcccccCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 518 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~---------------~~q~L~~~g~~L~-d~~tL~~~~I~ 518 (533)
..|+|+|++.+|+.+.++|.+++||++||++|++.+++|+ ++|+|+|+|+.|. |++||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 5699999999999999999999999999999999999987 5789999999996 67999999999
Q ss_pred CCCEEEEEEecCCC
Q 009480 519 KESTLHLVLRLRGG 532 (533)
Q Consensus 519 ~~~tl~l~~rl~GG 532 (533)
+|++|+++.|++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999999985
No 85
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=120.52 Aligned_cols=76 Identities=39% Similarity=0.693 Sum_probs=72.5
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
...|+|+|++.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.+++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999998765
No 86
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.61 E-value=2.3e-15 Score=120.38 Aligned_cols=76 Identities=29% Similarity=0.501 Sum_probs=71.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhh---cCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~---~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
+..|+|+|++.+|+.+.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|..+-
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 467999999999999999999999999999999998 8999999999999999999999999999999999998864
No 87
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.1e-15 Score=127.91 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=68.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHh------hhCC--CCccceEEEccEEccCCCCccccccccc--ccceEE
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~~i--~~~~q~l~~~g~~L~d~~~l~~y~i~~~--sti~l~ 70 (533)
|+|+|++++|++++++|++++||.+||++|++ ++++ |+++|+|+|+|+.|+|+++|++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 7785 6999999999999999999999999654 689999
Q ss_pred EEec
Q 009480 71 LRLR 74 (533)
Q Consensus 71 ~~~~ 74 (533)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8754
No 88
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3.2e-15 Score=122.04 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhh---cCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~---~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~G 531 (533)
|+|+|++.+|+.+.++|++++||++||.+|++. +|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 899999999999999999999999999999999999987643
No 89
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.61 E-value=1.8e-15 Score=128.12 Aligned_cols=78 Identities=29% Similarity=0.584 Sum_probs=71.7
Q ss_pred CCeeeEEEeC----------CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEE
Q 009480 455 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 524 (533)
Q Consensus 455 ~~m~i~v~~~----------~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~ 524 (533)
.+++|.|+.. +|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4555556543 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 009480 525 LVLRLRGG 532 (533)
Q Consensus 525 l~~rl~GG 532 (533)
|++|++||
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999999
No 90
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.61 E-value=5.2e-17 Score=140.25 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||++|++|+|.+|++||
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
No 91
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.9e-16 Score=130.54 Aligned_cols=91 Identities=32% Similarity=0.533 Sum_probs=67.7
Q ss_pred CcccccccccccceEEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCcccc
Q 009480 55 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134 (533)
Q Consensus 55 ~l~~y~i~~~sti~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~ 134 (533)
-+++|.|. +|.++.++....|.|+||+ +|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++
T Consensus 9 ~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 9 PMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred CccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence 46677774 5666666666667888887 89999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceeEEEE
Q 009480 135 YNIQKESTLHLVLR 148 (533)
Q Consensus 135 y~i~~~s~i~l~~~ 148 (533)
|+|.+|++|+|+.+
T Consensus 86 ~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 86 YHIQDGHSVHLVKS 99 (101)
T ss_dssp TTCCTTEEEEECCC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999754
No 92
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.39 E-value=6.1e-17 Score=126.69 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeec
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
|+|+||+.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998875
No 93
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.2e-15 Score=123.06 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhh---hCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
|+|+||+.+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 789999999999999999999999999999999 79999999999999999999999999999999999988653
No 94
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=6.7e-17 Score=142.61 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|++|+|+.||++|||++|++|+|++|++||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 95
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=9e-16 Score=124.90 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=73.0
Q ss_pred CCeEEEEEecCCc--EEEEEEcCCCcHHHHHHHHhhhh--CCCCCCeEEEecCccccCCCccccc--cccccCceeEEEE
Q 009480 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 148 (533)
Q Consensus 75 ~~m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~L~~~g~~L~d~~~L~~y--~i~~~s~i~l~~~ 148 (533)
..|+|+||+.+|+ .+.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+.+|++| +|.++++|||+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4699999999988 67788889999999999999998 9999999999999999999999999 9999999999998
Q ss_pred eecc
Q 009480 149 LRGG 152 (533)
Q Consensus 149 ~~~~ 152 (533)
+++|
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 96
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=3e-15 Score=128.12 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=71.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|+|++. |+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|..|++||
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 5699999998 9999999999999999999999999999999999999999999999999999999999999999998
No 97
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.60 E-value=2.9e-15 Score=122.07 Aligned_cols=75 Identities=20% Similarity=0.428 Sum_probs=69.5
Q ss_pred cCCeeeEEEeCCCCEEEE--EecCCCcHHHHHHHH-hhhcCCCCCcEEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 009480 454 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 528 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~--~v~~~~tV~~LK~~I-~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I-~~~~tl~l~~r 528 (533)
...|+|+|++.+|+.+.+ +|.+++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|+|.++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 578999999999998777 566999999999999 8899999999999999999999999999999 99999999875
No 98
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=6.2e-16 Score=127.04 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCC---------------CCeEEEecCcccc-CCCcccccccc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 138 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---------------~~q~L~~~g~~L~-d~~~L~~y~i~ 138 (533)
..|+|+|++++|+.++++|++++||++||++|++++|+|+ ++|+|+|+|+.|. |+.+|++|+|.
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 3599999999999999999999999999999999999987 4679999999996 67999999999
Q ss_pred ccCceeEEEEeecc
Q 009480 139 KESTLHLVLRLRGG 152 (533)
Q Consensus 139 ~~s~i~l~~~~~~~ 152 (533)
+|++||++.++++.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999988764
No 99
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.4e-15 Score=126.59 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEe
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~ 73 (533)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|+|.+++++|++++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999864
No 100
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=126.48 Aligned_cols=79 Identities=92% Similarity=1.246 Sum_probs=75.1
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.++++||
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999998875
No 101
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-15 Score=125.82 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=70.2
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
|+|+|++.+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999874
No 102
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=4.8e-15 Score=124.04 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=71.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhh------hcCC--CCCcEEEEEcCeecCCCCcccccCCCCC--CEE
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 523 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~------~~gi--p~~~q~L~~~g~~L~d~~tL~~~~I~~~--~tl 523 (533)
...|+|+|++.+|+++.++|.+++||++||++|++ ++|+ |+++|+|+|.|+.|+|+.||++|+|..+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45799999999999999999999999999999999 6675 6999999999999999999999999766 689
Q ss_pred EEEEecCCC
Q 009480 524 HLVLRLRGG 532 (533)
Q Consensus 524 ~l~~rl~GG 532 (533)
||++|+.+.
T Consensus 94 hLvlr~~~~ 102 (116)
T 1wgh_A 94 HLVARETLP 102 (116)
T ss_dssp EEEECSSCS
T ss_pred EEEccCCCC
Confidence 999988764
No 103
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.1e-15 Score=124.72 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=73.2
Q ss_pred CCeeeEEEeCCC----CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEEEec
Q 009480 455 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 455 ~~m~i~v~~~~g----~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~tl~l~~rl 529 (533)
..|+|+|++..+ +.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|..|.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 458999998654 7999999999999999999999999999999999999999987 69999999999999999999
Q ss_pred CCC
Q 009480 530 RGG 532 (533)
Q Consensus 530 ~GG 532 (533)
+||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 104
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.5e-15 Score=121.70 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=61.0
Q ss_pred CceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEecC
Q 009480 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~ 379 (533)
|+++++++++++||+++|++|++++|+||++|+|+|.|++|+|+.||++|+|+++++| ++.++++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 7899999999999999999999999999999999999999999999999999999999 5555544
No 105
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.3e-15 Score=124.64 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.1
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...|+|+|+...|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 35699999998886 7999999999999999999999999999999999999999999999999999999999999998
No 106
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.58 E-value=5.5e-15 Score=115.75 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
|+|+|++ .|+.+.+++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8899999 8999999999999999999999999999999999999999999999999999999999999875
No 107
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-15 Score=121.23 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=74.3
Q ss_pred ecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 453 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 453 ~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
....|+|+|+.. |+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+|..|+++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 456899999998 8899999999999999999999999999999999999999999999999999999999999998763
No 108
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.4e-15 Score=123.72 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...|+|+|++..|+.+.++|.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999987653
No 109
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.58 E-value=4.8e-15 Score=116.12 Aligned_cols=73 Identities=33% Similarity=0.553 Sum_probs=69.4
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
.|+|+|++ +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..++
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 38999999 99999999999999999999999999999999999999999999999999999999999997653
No 110
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=2.5e-15 Score=126.42 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=75.4
Q ss_pred cCCeEEEEEec---CCcEEEEEEcC-CCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEe
Q 009480 74 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 74 ~~~m~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
++.|+|+|+++ +|+.+.++|++ ++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46799999998 89999999998 999999999999999999999999999999999999999999999999999988
Q ss_pred ecc
Q 009480 150 RGG 152 (533)
Q Consensus 150 ~~~ 152 (533)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 111
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.58 E-value=4.1e-15 Score=121.48 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=68.3
Q ss_pred CeEEEEcCCC--cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccc-cccccceEEEE
Q 009480 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i-~~~sti~l~~~ 72 (533)
|+|||++..+ .+++++|.|++||.++|++|++++|+|+++|+|+|+|+.++|++||++|+| ++++++||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999885 799999999999999999999999999999999999999999999999999 69999999874
No 112
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=126.81 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=70.7
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhh------hhCCC--CCCeEEEecCccccCCCccccccccccC--ce
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TL 143 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~L~~~g~~L~d~~~L~~y~i~~~s--~i 143 (533)
...|.|+||+++|++++++|++++||++||++|++ ++|+| +++|+|+|+|+.|+|+.||++|+|.+++ ++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34699999999999999999999999999999999 77884 8999999999999999999999999766 78
Q ss_pred eEEEEeec
Q 009480 144 HLVLRLRG 151 (533)
Q Consensus 144 ~l~~~~~~ 151 (533)
||++++++
T Consensus 95 hlv~r~~~ 102 (125)
T 2gow_A 95 HLVARETL 102 (125)
T ss_dssp EEEECSCC
T ss_pred EEEecCCC
Confidence 88887754
No 113
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=3.3e-15 Score=122.95 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=73.4
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+.+|+ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++++
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 46799999999886 7999999999999999999999999999999999999999999999999999999999887654
No 114
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=125.54 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhh------hcCCC--CCcEEEEEcCeecCCCCcccccCCCCCC--EEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH 524 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~------~~gip--~~~q~L~~~g~~L~d~~tL~~~~I~~~~--tl~ 524 (533)
..|+|++++.+|+++.++|.+++||++||++|++ ++|+| +++|+|+|+|+.|+|+.||++|+|..++ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4588999999999999999999999999999999 77884 9999999999999999999999999766 799
Q ss_pred EEEecCCC
Q 009480 525 LVLRLRGG 532 (533)
Q Consensus 525 l~~rl~GG 532 (533)
|++|++||
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 99999875
No 115
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.7e-15 Score=123.56 Aligned_cols=77 Identities=27% Similarity=0.479 Sum_probs=73.2
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 74 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
...|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++.+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999987654
No 116
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=120.00 Aligned_cols=78 Identities=31% Similarity=0.387 Sum_probs=72.5
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeec
Q 009480 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 73 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
....|+|+||+. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 346799999998 899999999999999999999999999999999999999999999999999999999999887643
No 117
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=3.3e-15 Score=122.38 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=73.2
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+|++. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||+++++++
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 5699999998 9999999999999999999999999999999999999999999999999999999999999887665
No 118
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.54 E-value=5.7e-15 Score=120.62 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.7
Q ss_pred cCCeEEEEEecCCc--EEEEEEcCCCcHHHHHHHHhhh-hCCC-CCCeEEEecCccccCCCccccc--cccccCceeEE
Q 009480 74 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 146 (533)
Q Consensus 74 ~~~m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip-~~~q~L~~~g~~L~d~~~L~~y--~i~~~s~i~l~ 146 (533)
...|+|+||+++|+ .++++|++++||.+||++|+++ .|.| +++|+|+|+|+.|+|+.+|++| +|.++++|||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 35799999999998 6899999999999999999986 5666 5999999999999999999999 99999999984
No 119
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.5e-14 Score=123.75 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+. |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+++++
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 4699999998 9999999999999999999999999999999999999999999999999999999999999987765
No 120
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.54 E-value=5.4e-16 Score=133.87 Aligned_cols=77 Identities=96% Similarity=1.327 Sum_probs=0.4
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecce
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~ 153 (533)
|+|+|++++|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988873
No 121
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-15 Score=120.01 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=65.1
Q ss_pred CeEEEEcCCCc--EEEEEecCcccHHHHHHHHHhh-hCCC-CccceEEEccEEccCCCCcccc--cccccccceEE
Q 009480 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~-~~i~-~~~q~l~~~g~~L~d~~~l~~y--~i~~~sti~l~ 70 (533)
|+|+|++++|+ +++++|.+++||.+||++|+++ .|+| +++|+|+|+|+.|+|+++|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 7899999999999999999986 5666 5999999999999999999999 99999999984
No 122
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.53 E-value=3.1e-14 Score=116.28 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=67.9
Q ss_pred CeeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 009480 456 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 528 (533)
Q Consensus 456 ~m~i~v~~~~g--~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I-~~~~tl~l~~r 528 (533)
.|+++|++..+ .++.++|.+++||++||++|++++|+||++|||+|+|+.++|+.||++||| ++|+++||.+.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 58889998764 689999999999999999999999999999999999999999999999999 59999999873
No 123
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.52 E-value=8.6e-16 Score=135.51 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998876
No 124
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=1.1e-14 Score=120.43 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=71.9
Q ss_pred CCeEEEEEecCC----cEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCC-CccccccccccCceeEEEEe
Q 009480 75 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~m~i~vk~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~~L~~y~i~~~s~i~l~~~~ 149 (533)
..|+|+|++..+ +.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.+|++|+|..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999998754 7999999999999999999999999999999999999999887 79999999999999999887
Q ss_pred ecc
Q 009480 150 RGG 152 (533)
Q Consensus 150 ~~~ 152 (533)
+++
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
No 125
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=1.8e-14 Score=120.14 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=72.5
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||..+|+ +.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++++
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4699999999886 7999999999999999999999999999999999999999999999999999999999887664
No 126
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.51 E-value=2.9e-14 Score=120.65 Aligned_cols=78 Identities=29% Similarity=0.584 Sum_probs=72.0
Q ss_pred CCeEEEEEec----------CCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCcee
Q 009480 75 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 144 (533)
Q Consensus 75 ~~m~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~ 144 (533)
+.++|.|+.. +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4566677654 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecc
Q 009480 145 LVLRLRGG 152 (533)
Q Consensus 145 l~~~~~~~ 152 (533)
|+++++||
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99998887
No 127
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.50 E-value=1.6e-15 Score=137.08 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|+|++++|+++.++|++++||.+||.+|++.+|||+++|+|+|+|++|+|+.||+ ++|||||++|++||
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999999 89999999999999
No 128
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.48 E-value=6.7e-14 Score=111.56 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.7
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEE
Q 009480 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~ 148 (533)
.++++++|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4566789999999999999999999999999999999999999999999999999999999999998754
No 129
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.48 E-value=3.1e-15 Score=135.24 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCCCCcccccccccccceEEEEecCC
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~sti~l~~~~~~~ 76 (533)
|||||++++|++++|+|+++|||.+||++|++++|||+++|+|+|+|++|+|+++|+ ++|+|||+++++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 89999999887665
No 130
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.3e-13 Score=111.52 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=76.1
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|+|++.+|+.+.++|.+++++..||.+++++.|+|+++++|+|+|++|.++.|+++|++++|++|++.++++||
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999999
No 131
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=6.6e-14 Score=114.15 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=68.6
Q ss_pred CCeEEEEEecCCcEE-EEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
..|+|+|| +.|+.+ .++|++++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++|+|+....
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 46899999 578999 6999999999999999999999999999999999999999 99999999999999976543
No 132
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=115.09 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=67.3
Q ss_pred CceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe--cceEcCCCCcccccccccCCeEEEEEE
Q 009480 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 304 ~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~--~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.|.+|++++.|+++++++++++||+++|++|++++||||++|+|+| .|+ |+|+.+|++|+|+++++|+|...
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 4789999999999999999999999999999999999999999997 566 99999999999999999999754
No 133
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1.1e-13 Score=113.04 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=69.5
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCC-CccccccccccCceeEEEEeec
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
..|+|+||+++|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|+|.+|++|||+++.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 579999999999999999999999999999999987 8999999999999999 9999999999999999887544
No 134
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=113.91 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=70.2
Q ss_pred eeeeee-ecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEecCCe
Q 009480 153 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (533)
Q Consensus 153 ~~i~vk-~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~~~~ 229 (533)
+.|+|+ ..+++.+.+++.++.||.+||+.++...++|+++|+|+|+||.|.|+.||.+|||++|.+|||+.+.....
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPD 93 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTT
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCc
Confidence 556666 55688999999999999999999999999999999999999999999999999999999999999876543
No 135
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=112.98 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=71.4
Q ss_pred CeEEEEE-ecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeeccee
Q 009480 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (533)
Q Consensus 76 ~m~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 154 (533)
.+.|.|+ ...|+.++++++++.||.+||++++...++|+++|+|+|+||.|.|+.||++|||++|.+|||+.+...+-.
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence 3566666 567889999999999999999999999999999999999999999999999999999999999998765433
No 136
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.45 E-value=1.8e-13 Score=109.09 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=64.9
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
.+++...|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 456667899999999999999999999999999999999999999999999999999999999999875
No 137
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.45 E-value=1.1e-13 Score=111.54 Aligned_cols=72 Identities=22% Similarity=0.455 Sum_probs=68.3
Q ss_pred CCeeeEEEeCCCCEEEE-EecCCCcHHHHHHHHhhhcCCCCCcEEEE---EcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 455 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~-~v~~~~tV~~LK~~I~~~~gip~~~q~L~---~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
..|+|+|+. .|+.+.+ ++++++||++||++|++.+|+|+++|+|+ |+|++|+|+.+|++|||.+|++|+|..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 469999996 7889999 99999999999999999999999999999 999999999999999999999999875
No 138
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=2e-13 Score=111.43 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=70.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~tl~l~~rl~G 531 (533)
..|+|+|++.+|+.+.++|++++||++||.+|++.+ +++|+|+|+|+.|+|+ .+|++|||.+|++|||+++..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 579999999999999999999999999999999998 8999999999999999 9999999999999999998654
No 139
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=9.4e-14 Score=111.11 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=64.4
Q ss_pred CeEEEEEecCCcEE--EE-EEcCCCcHHHHHHHHhhh-hCCCCCCeEEEec--CccccCCCccccccccccCceeE
Q 009480 76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 76 ~m~i~vk~~~g~~~--~l-~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--g~~L~d~~~L~~y~i~~~s~i~l 145 (533)
.|+|+|+++.|+.+ .+ +|+|++||.+||++|++. .|+||++|+|+|. |+.|+|+.+|++|+|.++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 49999999998774 68 999999999999999994 8999999999977 99999999999999999998775
No 140
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.6e-14 Score=114.10 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=67.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEE--ccEEccCCCCcccccccccccceEEEEe
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~--~g~~L~d~~~l~~y~i~~~sti~l~~~~ 73 (533)
|++|+...+|++++++|.+++||.++|++|+++.|||+++|+|++ .|+ |+|+++|++|+|..++++|++++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 788999999999999999999999999999999999999999986 566 999999999999999999998853
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=2.6e-13 Score=113.14 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=70.0
Q ss_pred CCeeeEEEeCCC---CEEEEEecC---------CCcHHHHHHHHhhhc--CCCCCc-EEEEEcCeecCCCCcccccCCCC
Q 009480 455 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 519 (533)
Q Consensus 455 ~~m~i~v~~~~g---~~~~~~v~~---------~~tV~~LK~~I~~~~--gip~~~-q~L~~~g~~L~d~~tL~~~~I~~ 519 (533)
..|+|+|+...+ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 468999999888 789999554 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEecC
Q 009480 520 ESTLHLVLRLR 530 (533)
Q Consensus 520 ~~tl~l~~rl~ 530 (533)
|++|+|+.|..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998764
No 142
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=7.7e-14 Score=111.62 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.3
Q ss_pred CeEEEEcCCCcEE--EE-EecCcccHHHHHHHHHh-hhCCCCccceEEEc--cEEccCCCCcccccccccccceE
Q 009480 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (533)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~ik~ki~~-~~~i~~~~q~l~~~--g~~L~d~~~l~~y~i~~~sti~l 69 (533)
|+|+|++++|+.+ ++ +|.|++||.+||++|++ +.|+|+++|+|.|. |+.|+|+++|++|+|.+++++|+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999999775 58 99999999999999999 58999999999987 99999999999999999999776
No 143
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.42 E-value=2.3e-13 Score=109.75 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEE-EecCcccHHHHHHHHHhhhCCCCccceEE---EccEEccCCCCcccccccccccceEEEE
Q 009480 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~-~v~~~dtv~~ik~ki~~~~~i~~~~q~l~---~~g~~L~d~~~l~~y~i~~~sti~l~~~ 72 (533)
|+|+|+. +|+++++ +|.+++||.++|++|+++.|+|+++|+|+ |+|+.|+|+.+|++|+|.+++++||+..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 7899996 8999999 99999999999999999999999999999 9999999999999999999999999754
No 144
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=2.1e-13 Score=111.22 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=66.3
Q ss_pred CCeeeEEEeCCCCEE-EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 455 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~-~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
..|+|+|+. .|+.+ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|||++|++|+|+.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 458899995 68899 6999999999999999999999999999999999999999 99999999999999865
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.41 E-value=6.4e-13 Score=107.66 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred CCeeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 009480 455 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g--~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~--g~---~L-~d~~tL~~~~I~~~~tl~l~ 526 (533)
..+.|+|+...+ +.+++++++++||++||++|+..+|||+++|+|+|. |+ .| +|++||++|||++|++|+|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 446677776555 478999999999999999999999999999999997 45 55 89999999999999999985
No 146
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=9.9e-13 Score=105.48 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=75.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|.|++.+|+...++|.+++++..|+.+.+++.|+|+++++++|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999999999
No 147
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.41 E-value=5e-13 Score=108.26 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=64.9
Q ss_pred cCCeEEEEEecCC--cEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec--Cc---cc-cCCCccccccccccCceeE
Q 009480 74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 74 ~~~m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--g~---~L-~d~~~L~~y~i~~~s~i~l 145 (533)
.+.+.|+|+...+ +.++++|++++||++||++|+.++|+||++|+|+|. |+ .| +|+++|++|+|.+|++|+|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 4567888887665 489999999999999999999999999999999998 44 44 8999999999999999998
Q ss_pred E
Q 009480 146 V 146 (533)
Q Consensus 146 ~ 146 (533)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 148
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.41 E-value=4.7e-13 Score=130.84 Aligned_cols=77 Identities=94% Similarity=1.277 Sum_probs=72.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~ 530 (533)
+..|+|+|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999986
No 149
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=5.8e-13 Score=107.95 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=67.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCC-----CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCC-CCcccccCCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~-----~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d-~~tL~~~~I~~~~tl~l~~r 528 (533)
..|+|+|+. .|+.+.++++++ .||++||.+|++.+|+|+++|+|+|+|+.|.| +.+|++|||++|++|+|..+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999998 488999999995 99999999999999999999999999999998 66899999999999999875
Q ss_pred c
Q 009480 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=4.5e-13 Score=108.58 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=67.9
Q ss_pred CCeEEEEEecCCcEEEEEEcCC-----CcHHHHHHHHhhhhCCCCCCeEEEecCccccC-CCccccccccccCceeEEEE
Q 009480 75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d-~~~L~~y~i~~~s~i~l~~~ 148 (533)
..|+|+|++ .|+.+.++|+++ +||.+||++|++..|+|+++|+|+|.|+.|+| +.+|++|+|.++++|+|+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999997 588999999996 99999999999999999999999999999988 66899999999999999765
Q ss_pred e
Q 009480 149 L 149 (533)
Q Consensus 149 ~ 149 (533)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.40 E-value=4.2e-13 Score=106.67 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=60.4
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEe-------cCccccCCCccccccccccCceeEEEEe
Q 009480 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~g~~L~d~~~L~~y~i~~~s~i~l~~~~ 149 (533)
.+.+.+.+.+++++||++||++|+.++|+||++|+|+| .|+.|+|+++|++|+|.+|++|||+-..
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 45567889999999999999999999999999999996 5899999999999999999999998643
No 152
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.40 E-value=3.9e-13 Score=106.86 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=60.2
Q ss_pred cccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEe-------CCeecCCCCccccccCCCCCEEEEEEEe
Q 009480 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 225 (533)
Q Consensus 160 ~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~G~~L~d~~tl~~y~I~~~~~i~l~~~~ 225 (533)
.+.+.+...+++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+.+.
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 34566789999999999999999999999999999996 5899999999999999999999998754
No 153
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=2.6e-13 Score=110.45 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=66.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEE
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~ 148 (533)
..|+|+|+ +.|+.+.++|++++||.+||++|+++.|+|+++|+|+|.|+.|+| .+|++|+|.++++|+|+.+
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 46899998 678999999999999999999999999999999999999999954 5999999999999999754
No 154
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=4.9e-13 Score=111.45 Aligned_cols=73 Identities=29% Similarity=0.393 Sum_probs=68.3
Q ss_pred CeEEEEcCCC---cEEEEE--------ecCc-ccHHHHHHHHHhhh--CCCCcc-ceEEEccEEccCCCCcccccccccc
Q 009480 1 MQIFVKTLTG---KTITLE--------VESS-DTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (533)
Q Consensus 1 ~~i~~~~~~g---~~~~~~--------v~~~-dtv~~ik~ki~~~~--~i~~~~-q~l~~~g~~L~d~~~l~~y~i~~~s 65 (533)
|+|+|++.+| ++++++ |.++ +||.+||++|+++. |+|++. |+|+|+|+.|+|+++|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 899999 4554 99999999999999 999999 9999999999999999999999999
Q ss_pred cceEEEEe
Q 009480 66 TLHLVLRL 73 (533)
Q Consensus 66 ti~l~~~~ 73 (533)
++||+.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998854
No 155
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.36 E-value=9.3e-13 Score=128.73 Aligned_cols=78 Identities=92% Similarity=1.273 Sum_probs=72.5
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEee
Q 009480 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 73 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~ 150 (533)
....|+|+||+++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999988753
No 156
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.36 E-value=2.3e-12 Score=104.05 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999999998
No 157
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=1.6e-12 Score=105.59 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCeEEEEEecCC--cEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCc---c----ccCCCccccccccccCceeE
Q 009480 75 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 75 ~~m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~---~----L~d~~~L~~y~i~~~s~i~l 145 (533)
+.+.++|+.... ..++++|++++||++||++|+.++|+||++|+|+|.|+ . ++|+++|++|+|.+|++|+|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 456677776444 47899999999999999999999999999999999983 3 48999999999999999998
Q ss_pred EE
Q 009480 146 VL 147 (533)
Q Consensus 146 ~~ 147 (533)
+-
T Consensus 93 vd 94 (97)
T 2kj6_A 93 ID 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 158
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=4.7e-13 Score=108.95 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=65.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
..|+|+|+ ..|+++.+++++++||++||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+|++|++|+|+.+
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 45788888 46889999999999999999999999999999999999999995 45999999999999998753
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=2e-12 Score=104.97 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=61.8
Q ss_pred CeeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCe---e---c-CCCCcccccCCCCCCEEEEE
Q 009480 456 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q---L-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 456 ~m~i~v~~~~g--~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~---~---L-~d~~tL~~~~I~~~~tl~l~ 526 (533)
.+.++|..... ..+++++++++||++||++|+..+||||++|+|+|.|+ . | +|+++|++|||++|++|+|+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 45566665333 47899999999999999999999999999999999883 3 4 88999999999999999986
Q ss_pred E
Q 009480 527 L 527 (533)
Q Consensus 527 ~ 527 (533)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 3
No 160
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.31 E-value=2e-12 Score=130.17 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=74.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhh---hcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEE-EEEEecC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 530 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~---~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl-~l~~rl~ 530 (533)
..|+|+|++.+|+++.++|.+++||.+||.+|++ ++|+|+++|+|+|+|+.|+|+++|++|||++|++| +|+.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 5799999999999999999999999999999999 67899999999999999999999999999999999 8999988
Q ss_pred CC
Q 009480 531 GG 532 (533)
Q Consensus 531 GG 532 (533)
||
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 161
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=3.9e-12 Score=104.50 Aligned_cols=80 Identities=15% Similarity=0.337 Sum_probs=76.6
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
+..|+|.|++.+|+.+.++|.+++++..|+.+++++.|+|+++++|+|+|++|.++.|+++|++++|++|++.++++||.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999993
No 162
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.30 E-value=6.5e-12 Score=103.15 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=72.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+..|+|.|++ +|+...++|.+++++..|+.+++++.|+|+++++|+|+|++|.++.|+++|++++|++|++.++++||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3558899999 99999999999999999999999999999999999999999999999999999999999999999998
No 163
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=5.4e-12 Score=101.98 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=73.3
Q ss_pred CceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEecCC
Q 009480 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (533)
Q Consensus 304 ~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~ 380 (533)
.++|.|++.+|+.+.+.++++++++.|+++++++.|+|++++||+|.|+.|+++.|+++|+++++|+|++..++.++
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999887665
No 164
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.30 E-value=2.3e-12 Score=129.78 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=71.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhh---hhCCCCCCeEEEecCccccCCCccccccccccCce-eEEEEee
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 150 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i-~l~~~~~ 150 (533)
..|+|+||+++|+.+.++|++++||.+||++|++ +.|+|+++|+|+|+|+.|+|+++|++|+|.++++| +++.+++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 5699999999999999999999999999999999 57899999999999999999999999999999999 6666655
Q ss_pred cc
Q 009480 151 GG 152 (533)
Q Consensus 151 ~~ 152 (533)
++
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 165
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.27 E-value=5e-12 Score=105.19 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCeEEEEEecCCcEEEEEEc-CCCcHHHHHHHHhhhhCCCCCCeEEEecCc-----------c----ccCCCcccccccc
Q 009480 75 GGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQ 138 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-----------~----L~d~~~L~~y~i~ 138 (533)
..|.|+||+.+|+. .++|+ +++||.+||++|+++.|+|+++|+|+|.|+ . ++|+.+|++|+|.
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 35999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred ccCceeEEEE
Q 009480 139 KESTLHLVLR 148 (533)
Q Consensus 139 ~~s~i~l~~~ 148 (533)
+|++|||...
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999999764
No 166
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.27 E-value=5.1e-12 Score=104.60 Aligned_cols=80 Identities=15% Similarity=0.391 Sum_probs=76.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
+..|+|.|++.+|+.+.++|.+++++..|+.+++++.|+|+++++|+|+|++|.++.|+++|++++|++|++.++++||+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999994
No 167
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=9e-12 Score=101.39 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=61.2
Q ss_pred eeeEEEeCCC-CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 009480 457 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g-~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g---~~----L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
+.|+|+.... ..+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+++|++|||++|++|||.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5566665443 2688999999999999999999999999999999986 43 4899999999999999999864
No 168
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.26 E-value=3.5e-12 Score=106.14 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.7
Q ss_pred CeeeEEEeCCCCEEEEEec-CCCcHHHHHHHHhhhcCCCCCcEEEEEcCe-----------e----cCCCCcccccCCCC
Q 009480 456 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 519 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~-~~~tV~~LK~~I~~~~gip~~~q~L~~~g~-----------~----L~d~~tL~~~~I~~ 519 (533)
.|.|+|++.+|+. .++|. +++||++||++|++.+|+|+++|+|++.|+ . ++|+.||++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999965 78999 999999999999999999999999999888 4 57899999999999
Q ss_pred CCEEEEEEe
Q 009480 520 ESTLHLVLR 528 (533)
Q Consensus 520 ~~tl~l~~r 528 (533)
|++|||...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998753
No 169
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=1.1e-11 Score=100.91 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=62.8
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecC---cc----ccCCCccccccccccCceeEEE
Q 009480 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---~~----L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.+.|+|+..... .+.++|++++||++||++|+.++|+|+++|+|+|.| +. ++|+++|++|+|.+|++||+..
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 366777765443 689999999999999999999999999999999987 43 5899999999999999999864
No 170
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.20 E-value=5.5e-11 Score=91.30 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
|+|.|++.+|+...++|.+++++..|+.+.+++.|+|+++++++|+|+.|.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999986
No 171
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=5e-11 Score=95.51 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.5
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEecCC
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~ 380 (533)
++|.|++.+|+.+.+.+.++++++.|+++++++.|+|+++++|+|.|..|+++.|+++|+++++|+|++...+.++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999877655
No 172
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.19 E-value=4.8e-11 Score=101.63 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=63.6
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecC---c---c-ccCCCccccccccccCceeEEE
Q 009480 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---~---~-L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.+.|+|+...+. .+.+++++++||++||++|+.++|+|+++|+|+|.| + . ++|+.+|++|+|.+|++|||..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 367778765543 689999999999999999999999999999999987 4 2 4899999999999999999986
Q ss_pred E
Q 009480 148 R 148 (533)
Q Consensus 148 ~ 148 (533)
.
T Consensus 86 ~ 86 (122)
T 1t0y_A 86 V 86 (122)
T ss_dssp C
T ss_pred C
Confidence 3
No 173
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.18 E-value=4.3e-11 Score=101.99 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=64.2
Q ss_pred cceeeeeeecccc-eEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCC---e---e-cCCCCccccccCCCCCEEEEE
Q 009480 151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLV 222 (533)
Q Consensus 151 ~~~~i~vk~~~g~-~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G---~---~-L~d~~tl~~y~I~~~~~i~l~ 222 (533)
+.+.|.|+...+. .+.+++.+++||++||++|+.++|+|+++|||+|.| + . ++|+.+|++|||++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 3456667655443 688999999999999999999999999999999987 4 3 489999999999999999998
Q ss_pred EEec
Q 009480 223 LRLR 226 (533)
Q Consensus 223 ~~~~ 226 (533)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 7543
No 174
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.16 E-value=3.5e-11 Score=95.99 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=62.9
Q ss_pred eeeEEEeCCCCEEEEE-ecCCCcHHHHHHHHhhhcCCCCCcEEEEEc--CeecC---CCCcccccCCCCCCEEEEEE
Q 009480 457 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~-v~~~~tV~~LK~~I~~~~gip~~~q~L~~~--g~~L~---d~~tL~~~~I~~~~tl~l~~ 527 (533)
|+|+|++.+|+ ..++ +++++||++||..|++.+|+|++.|+|+++ +++|+ |+.+|++|||.+|++|+|.-
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999995 4577 999999999999999999999999999987 47874 67899999999999999864
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.16 E-value=7.9e-11 Score=90.38 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.5
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
++|.|++.+|+.+.+.+.++++++.|+++++++.|+|+++++|+|.|..|+++.|+++|++++||+|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999999985
No 176
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.14 E-value=1.8e-10 Score=89.94 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCCeeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009480 454 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 454 ~~~m~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
+..|+|.|++.+|+ .+.++|.+++++..|+.+.+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45689999999996 89999999999999999999999999999999999999999999999999999999985
No 177
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.13 E-value=4.2e-11 Score=95.51 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.1
Q ss_pred eEEEEEecCCcEEEEE-EcCCCcHHHHHHHHhhhhCCCCCCeEEEec--Ccccc---CCCccccccccccCceeEEEE
Q 009480 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--g~~L~---d~~~L~~y~i~~~s~i~l~~~ 148 (533)
|+|.||+.+|+. .++ +++++||.+||++|+++.|+|+++|+|+|. ++.|+ |+.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 789999999965 477 999999999999999999999999999987 47874 688999999999999988643
No 178
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.10 E-value=2.2e-10 Score=92.42 Aligned_cols=78 Identities=17% Similarity=0.387 Sum_probs=71.9
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|.|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++++|+|+|+.|.++.|.++|++.+|++|++..+..||
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 458888999999999999999999999999999999999999999999999999999999999999999999887765
No 179
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.10 E-value=7e-11 Score=117.26 Aligned_cols=76 Identities=21% Similarity=0.429 Sum_probs=68.1
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE---ecCccccCCCccccccccccCceeEEEEeec
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~ 151 (533)
..|.|+|| ++|+.++++|++++||++||++|++++|+||++|+|+ |.|+.|+|+.+|++|+|++|++|+|+.+...
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 35788999 6899999999999999999999999999999999999 8999999999999999999999999876544
No 180
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=3.1e-10 Score=93.17 Aligned_cols=78 Identities=15% Similarity=0.361 Sum_probs=73.0
Q ss_pred CCeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009480 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
..+.|.|++.+|+.+.+.|++.+++..|+..++++.|+|++.++|+|+|++|.++.|+.+|++.+||+|+++.++.+|
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 346788999999999999999999999999999999999999999999999999999999999999999998877665
No 181
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.07 E-value=3.4e-10 Score=88.38 Aligned_cols=71 Identities=10% Similarity=0.266 Sum_probs=67.7
Q ss_pred CceeEEEccCCc-eEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEE
Q 009480 304 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 304 ~~~i~v~~~~g~-~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.+.|.|++.+|+ .+.+.+.++++++.|+.+++++.|+++++++|+|.|..|+++.|+++|+++++|+|++.
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 367889999996 89999999999999999999999999999999999999999999999999999999975
No 182
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.04 E-value=1.5e-10 Score=114.88 Aligned_cols=76 Identities=21% Similarity=0.434 Sum_probs=67.3
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEE---eCCeecCCCCccccccCCCCCEEEEEEEecCC
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~~~ 228 (533)
.|.|+|+ .+|+++++++++++||++||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+.+....
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 4677887 5899999999999999999999999999999999999 89999999999999999999999999776543
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.04 E-value=3.9e-10 Score=92.57 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=69.1
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEecC
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~ 379 (533)
++|.|++ +|+.+.+.+.++++++.|+.+++++.|+++++++|+|.|..|+++.|+++|+++++|+|++...+.+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 5788999 9999999999999999999999999999999999999999999999999999999999999876543
No 184
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.03 E-value=2.9e-10 Score=94.03 Aligned_cols=80 Identities=15% Similarity=0.402 Sum_probs=75.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeeccee
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 154 (533)
..|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|+.|.++.|.++|++.++++|++.....||+.
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~~ 104 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGLE 104 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC--
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999998888763
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.92 E-value=3.8e-09 Score=86.11 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=60.7
Q ss_pred eeeEEEe---CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC-------eec-CCCCcccccCCCCCCEEEE
Q 009480 457 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 457 m~i~v~~---~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g-------~~L-~d~~tL~~~~I~~~~tl~l 525 (533)
+.|+|+. .+|+.+...+++++||++||.+|+..+|+|+..|+|++.+ ..| +|..+|++||+.+|++|+|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4556654 4677889999999999999999999999999999999863 235 5778999999999999999
Q ss_pred EE
Q 009480 526 VL 527 (533)
Q Consensus 526 ~~ 527 (533)
..
T Consensus 90 ~d 91 (97)
T 1wjn_A 90 RW 91 (97)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 186
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=7.2e-09 Score=85.76 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=73.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~G 531 (533)
+..++|.|+..+|+...++|.+++++..|+...+++.|+|++.++++|+|++|.++.|.+++++++|++|++..+..|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 356788889999999999999999999999999999999999999999999999999999999999999999998876
No 187
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.3e-08 Score=92.81 Aligned_cols=77 Identities=13% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.-++|.|+ .+|+...+++.+++++..|+...+++.|+|++++|++|+|++|.++.|.+++++++|++|++.+++.||
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 34677776 589999999999999999999999999999999999999999999999999999999999999999998
No 188
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.79 E-value=1.5e-08 Score=82.60 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=61.6
Q ss_pred eEEEEEe---cCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecC-------ccc-cCCCccccccccccCceeE
Q 009480 77 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 77 m~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-------~~L-~d~~~L~~y~i~~~s~i~l 145 (533)
+.|+|+. .+|..+...+++++||++||.+|+...|+|+..|+|.|.+ ..| +|..+|.+|++.+|++||+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4566664 4678899999999999999999999999999999999873 225 6788999999999999999
Q ss_pred EEE
Q 009480 146 VLR 148 (533)
Q Consensus 146 ~~~ 148 (533)
...
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 763
No 189
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.1e-08 Score=91.02 Aligned_cols=77 Identities=12% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++|.|+ .+|+...++|.+++++..|+...+++.|+|+++++++|+|+.|.++.|.+++++++|++|++.+.++||
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34677776 589999999999999999999999999999999999999999999999999999999999999999999
No 190
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.74 E-value=5.3e-06 Score=88.05 Aligned_cols=346 Identities=12% Similarity=0.168 Sum_probs=223.5
Q ss_pred EEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeC----Cee----c-----CCCCccccccCCCCCEEEEEEEec-----
Q 009480 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GKQ----L-----EDGRTLADYNIQKESTLHLVLRLR----- 226 (533)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----G~~----L-----~d~~tl~~y~I~~~~~i~l~~~~~----- 226 (533)
..+.|....|+.+|++.+.+..|+|+++|||-.- ++- + +.+.++.++.- .++.+.+.+...
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 3578899999999999999999999999998421 111 1 11223333321 233344444211
Q ss_pred ------------CCeeeEEEcCC--CCeEE----EEeecCCcHHHHHHHhhhhcCCCCCCeeEEec------Ccccc-CC
Q 009480 227 ------------GGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 281 (533)
Q Consensus 227 ------------~~~~i~V~~~~--g~~i~----~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~-d~ 281 (533)
..+-+|+|-.+ .+++. +.|...++|.++-..|.++.|+|++.-...|. -..|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 02557777543 45554 67889999999999999999999998777763 33467 68
Q ss_pred cccccc--ccCCCceEEEEEeec-C------C-----------ceeEEE---ccCCceEEEEeccCccHHHHHHHhcccc
Q 009480 282 RTLADY--NIQKESTLHLVLRLR-G------G-----------MQIFVK---TLTGKTITLEVESSDTIDNVKAKIQDKE 338 (533)
Q Consensus 282 ~tl~~~--~i~~~~ti~l~~~~~-~------~-----------~~i~v~---~~~g~~~~~~v~~~~ti~~lK~~I~~~~ 338 (533)
.|+... .+.+|+.|-+..... + . +.+.+. ..+...++++++...|-.++.++|.+..
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999997665432 1 1 122222 2457779999999999999999999999
Q ss_pred CCCCCceeEEec----ce---E--cCCCCccccccc----ccCCeEEEEEEe--------cCCeeEEEEecCC--cEEEE
Q 009480 339 GIPPDQQRLIFA----GK---Q--LEDGRTLADYNI----QKESTLHLVLRL--------RGGMQIFVKTLTG--KTITL 395 (533)
Q Consensus 339 ~ip~~~q~L~~~----g~---~--L~~~~tl~~y~i----~~~~~l~l~~~~--------~~~~~i~vk~~~g--~~~~~ 395 (533)
+++|..-|++-. +. . .....+|.+.=- ...+.|++..-. ...+.|+.-..+. ..+.+
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l 356 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL 356 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence 999988776521 21 1 223445543221 122456654221 2234443322222 26778
Q ss_pred EecCCCcHHHHHHHhhcccCCCC---ccceEe--ecCe---eccCCccccccccccCCeEEEEEEec--------CCeee
Q 009480 396 EVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGMQI 459 (533)
Q Consensus 396 ~v~~~~Tv~~lK~~I~~~~~vp~---~~q~l~--~~g~---~l~d~~tL~~~~i~~~~~l~l~~~~~--------~~m~i 459 (533)
.++.+.||.||-..++.+.+++. .+-++. ++++ .++++.+++...=....+++.-.-.. ..+-|
T Consensus 357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li 436 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV 436 (530)
T ss_dssp CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence 88999999999999999999873 444444 5554 46777777655332234444432111 11223
Q ss_pred EEEe-------CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcE---E--EEEcCe--ecCCCCc
Q 009480 460 FVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAGK--QLEDGRT 511 (533)
Q Consensus 460 ~v~~-------~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q---~--L~~~g~--~L~d~~t 511 (533)
.|.. .-|..+.+.|.+.+|+.++|++|.++.|++..++ + ++-.++ .++|+..
T Consensus 437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~ 502 (530)
T 2ylm_A 437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEY 502 (530)
T ss_dssp EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTC
T ss_pred EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccc
Confidence 3321 1266789999999999999999999999986543 3 343444 5666543
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.68 E-value=7.4e-08 Score=79.70 Aligned_cols=73 Identities=16% Similarity=0.397 Sum_probs=68.7
Q ss_pred CeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 228 ~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
.+.|.|+..+|+.+.+.|++.+++..|+..++++.|+++..++|.|+|++|.++.|.+++++.+||+|+++..
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 4677788889999999999999999999999999999999999999999999999999999999999998764
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.66 E-value=3e-09 Score=95.84 Aligned_cols=79 Identities=13% Similarity=0.311 Sum_probs=1.4
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
+..|+|.| ..+|+...++|.+++++..|+...+++.|+|+++++++|+|+++.++.|.+++++++|++|++..+++||+
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 45688888 77899999999999999999999999999999999999999999999999999999999999999999994
No 193
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.53 E-value=2.8e-05 Score=82.56 Aligned_cols=331 Identities=14% Similarity=0.174 Sum_probs=215.1
Q ss_pred cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEE--------ccC-----CCCcccccccccccceEEEE--e--
Q 009480 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLR--L-- 73 (533)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~--------L~d-----~~~l~~y~i~~~sti~l~~~--~-- 73 (533)
...++.|....|+.++|+.|++..|+|++.|||+.-... +.+ ..++.++. .+...+.+.+. .
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~ 114 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPE 114 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHH
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccc
Confidence 345789999999999999999999999999999875332 111 11222211 11222333321 1
Q ss_pred -------------cCCeEEEEEecC--CcEE----EEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec------Ccccc-
Q 009480 74 -------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE- 127 (533)
Q Consensus 74 -------------~~~m~i~vk~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~- 127 (533)
...+-||+|..+ .+++ .+.|+.+++|.++-..|.+..|+|++.-..+|. -..|+
T Consensus 115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~ 194 (530)
T 2ylm_A 115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD 194 (530)
T ss_dssp HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence 124788888654 3343 367899999999999999999999988777775 24466
Q ss_pred CCCccccc--cccccCceeEEEEee------------------cceeeeeeec---ccceEEEeecCCchHHHHHHHhhh
Q 009480 128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQD 184 (533)
Q Consensus 128 d~~~L~~y--~i~~~s~i~l~~~~~------------------~~~~i~vk~~---~g~~~~i~v~~~~tV~~lK~~i~~ 184 (533)
.+.|+.+. .+.+|+.|..-.... ..+.|.++.. ....+.++++...|-.++-+++.+
T Consensus 195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~ 274 (530)
T 2ylm_A 195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ 274 (530)
T ss_dssp SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 57899999 999999887765432 1234444432 356799999999999999999999
Q ss_pred hcCCCCCCeEEEeC----Ce---ec--CCCCccccccC----CCCCEEEEEEEec---------CCeeeEEEcCCC--Ce
Q 009480 185 KEGIPPDQQRLIFA----GK---QL--EDGRTLADYNI----QKESTLHLVLRLR---------GGMQIFVKTLTG--KT 240 (533)
Q Consensus 185 ~~gip~~~q~L~~~----G~---~L--~d~~tl~~y~I----~~~~~i~l~~~~~---------~~~~i~V~~~~g--~~ 240 (533)
+.++.+...||.-. |+ .+ ..+.+|.+.=- ..-..+..- .++ ..+.|+...... ..
T Consensus 275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Ye-vL~ipl~ElE~~r~~kv~w~~~~~~~~~ 353 (530)
T 2ylm_A 275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQ-QLKMKITDFENRRSFKCIWLNSQFREEE 353 (530)
T ss_dssp HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEE-ECSSCHHHHHSBCCEEEEEECTTSCEEE
T ss_pred HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEE-ECCCCHHHHhhCceEEEEEECCCCceEE
Confidence 99999988877521 22 11 22344433211 111233322 221 123443333322 26
Q ss_pred EEEEeecCCcHHHHHHHhhhhcCCCC---CCeeEE--ecCcc---ccCCccccccccCCCceEEEEEeec-------C-C
Q 009480 241 ITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRLR-------G-G 304 (533)
Q Consensus 241 i~~~v~~~~tV~~lK~~I~~~~gip~---~~q~L~--~~g~~---L~d~~tl~~~~i~~~~ti~l~~~~~-------~-~ 304 (533)
+.+-+....||++|-..+..+.+++. ...|+. ++++. +.++.++...+=....++.+..-+. . .
T Consensus 354 ~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~ 433 (530)
T 2ylm_A 354 ITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENE 433 (530)
T ss_dssp EEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTE
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCc
Confidence 67778889999999999999999874 334443 56653 5666677654322244443322111 0 0
Q ss_pred ceeEE----Ec---cCCceEEEEeccCccHHHHHHHhccccCCCCC
Q 009480 305 MQIFV----KT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (533)
Q Consensus 305 ~~i~v----~~---~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~ 343 (533)
+-|.| +. ..|..+.+.+.++.|..++|++|++++|++..
T Consensus 434 ~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 434 MLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 11222 11 35888889999999999999999999999865
No 194
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.9e-07 Score=82.48 Aligned_cols=100 Identities=10% Similarity=0.198 Sum_probs=80.4
Q ss_pred cCCeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCc
Q 009480 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (533)
Q Consensus 226 ~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~ 305 (533)
..-+.+.|+ .+|+.+.+.|++.+++..|+..++++.|+|+.+++|.|+|+++.++.|.+++++.+||+|+++..+.++.
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 344677786 4899999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred ----eeEEEccCCceEEEEeccCccH
Q 009480 306 ----QIFVKTLTGKTITLEVESSDTI 327 (533)
Q Consensus 306 ----~i~v~~~~g~~~~~~v~~~~ti 327 (533)
.+.++ .+...-.+.+.+++.+
T Consensus 106 kd~v~Fs~~-GD~G~~~i~l~~~~~~ 130 (200)
T 3pge_A 106 GETIKFVAD-GDIGSGSVIIKPFVDM 130 (200)
T ss_dssp -CCEEEEEE-CSSCEEEEEECCBCCS
T ss_pred CceEEEEee-ccCCeEEEEEecCCCC
Confidence 23332 2333344445555444
No 195
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.3e-07 Score=82.48 Aligned_cols=78 Identities=12% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCc
Q 009480 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~ 305 (533)
..+.|.|. .+|..+.+.|++.+++..|+...+++.|+|+..++|.|+|+.+.++.|.+++++.+||+|+++..+.+|.
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 34566676 4899999999999999999999999999999999999999999999999999999999999998887774
No 196
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.41 E-value=1.9e-06 Score=64.48 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=61.5
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
+.++.....-+.+.+.++++|.+|.+.-+...|||++ ..+|.|+|..|..+.+++||++++|+.|.+.+
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3444444445888999999999999999999999999 99999999999999999999999999999875
No 197
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.36 E-value=1.1e-05 Score=82.12 Aligned_cols=135 Identities=23% Similarity=0.329 Sum_probs=109.9
Q ss_pred CceEEEEeccCccHHHHHHHhccccC----CCCCceeEEe------cceEcCCCCcccccccccCCeEEEEEEecCCeeE
Q 009480 314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 383 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~I~~~~~----ip~~~q~L~~------~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i 383 (533)
+-+-||.++|++||+|++..|+++.+ .+++++.|.- .|+||++.+||..|++++++.+...+ ..+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 77789999999999999999998885 4789999988 68999999999999999999999985 44588
Q ss_pred EEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe--ecC---------eeccCCccccccccccCCeEEEEEE
Q 009480 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAG---------KQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 384 ~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g---------~~l~d~~tL~~~~i~~~~~l~l~~~ 452 (533)
.|..++|....+.+++++|+.|+-..|+++.|+.. ...+. +.. .-|+.++++.+.+.....++++..+
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e-~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC-GGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC-ccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 99999999999999999999999999999999875 33332 211 1245566777766655566666544
No 198
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.28 E-value=4.4e-07 Score=70.69 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=60.7
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCee---c--CCCCcccccCCCCCCEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~---L--~d~~tL~~~~I~~~~tl~l~ 526 (533)
.+|.|.++..+| ++.+++++++|+.+|+.+|++.+++|++.|.++++..+ | .++.+|+++||..|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999888 67788999999999999999999999999888765444 4 36789999999999999875
No 199
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.28 E-value=1e-07 Score=85.98 Aligned_cols=80 Identities=13% Similarity=0.301 Sum_probs=1.1
Q ss_pred ecCCeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009480 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 225 ~~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+...+.+.| ..+|+.+.+.|++.+.+..|+..++++.|++++.++|.|+|+++.++.|.+++++.+||+|+++....+|
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 344567778 7789999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred c
Q 009480 305 M 305 (533)
Q Consensus 305 ~ 305 (533)
.
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 4
No 200
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.17 E-value=7.2e-06 Score=65.83 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=67.1
Q ss_pred cCCeeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009480 454 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 454 ~~~m~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
+..+.|.|+..+|+ ...+.|.+++++..|....+++.|++++..++.|+|..|.++.|.+++++++|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35567778888885 78999999999999999999999999999999999999999999999999999999875
No 201
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.17 E-value=2.4e-07 Score=91.86 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=0.7
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG~ 533 (533)
...++|.|+. +|+...++|.+++++..|+...+++.|++++++++.|+|+.+.++.|.+++++++|++|++..++.|||
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 4456777776 677889999999999999999999999999999999999999999999999999999999999999996
No 202
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.13 E-value=4.2e-06 Score=65.29 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=70.9
Q ss_pred CCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEec
Q 009480 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 303 ~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
++|.+.|...+|+..++.+.|++|+.||=+.-|.++|++++++.|.|+++.|+-+..++--||++|+.|.|....+
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999997654
No 203
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.11 E-value=1.6e-06 Score=67.40 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=59.4
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCcc---c--cCCCccccccccccCceeEE
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~---L--~d~~~L~~y~i~~~s~i~l~ 146 (533)
+.|.|.|++.+| .+.+++++++|+.+|+++|++..+++++.|.+.+.... | .++.+|+++||++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 357788888876 67788999999999999999999999999888765433 3 47789999999999999874
No 204
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.10 E-value=7.2e-06 Score=76.28 Aligned_cols=79 Identities=13% Similarity=0.304 Sum_probs=73.2
Q ss_pred ecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 453 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 453 ~~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+..+.|.|+. +|+...+++..++++..|+...+++.|+|+++++++|+|+.+.++.|..+.+++++++|++...+.||
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 34556777776 77888999999999999999999999999999999999999999999999999999999999999998
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.06 E-value=1.1e-05 Score=63.87 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=46.8
Q ss_pred EcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcc--CCCCcccccc
Q 009480 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI 61 (533)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~--d~~~l~~y~i 61 (533)
.-..+..+++.+.+.+||..+|++|+++.|||+.+|+|+|.|+.|. .++.-..|.-
T Consensus 19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 3456789999999999999999999999999999999999998754 4444555543
No 206
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.05 E-value=2.2e-05 Score=58.82 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCC-CeEEEecCccccCCCccccccccccCceeEEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
+.+.+++.....+.++|.++.+|.++-..-..+.|||++ .-+|.|.|..|+.+.++.+|.+.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 445566677778999999999999999999999999999 89999999999999999999999999998864
No 207
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.04 E-value=5.6e-06 Score=69.65 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=61.3
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCC-------------------------------------ceeEE
Q 009480 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~-------------------------------------~q~L~ 348 (533)
.+-|++++|...++.|+.+.||.+++..||.+.||+.. .++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 48899999999999999999999999999999999744 33332
Q ss_pred e--cceEcCCCCcccccccccCCeEEEEEE
Q 009480 349 F--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 349 ~--~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
. .+.||++++||.++||.++++|.|+.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 2 248999999999999999999999854
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.99 E-value=0.00016 Score=73.51 Aligned_cols=134 Identities=24% Similarity=0.356 Sum_probs=106.3
Q ss_pred CCeEEEEeecCCcHHHHHHHhhhhcC----CCCCCeeEEe------cCccccCCccccccccCCCceEEEEEeecCCcee
Q 009480 238 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 307 (533)
Q Consensus 238 g~~i~~~v~~~~tV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i 307 (533)
+-+-++..++..||.++-..|.++.+ .+.+++-|.. +|.=|+.++||..|++++++.++...+ .+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~---~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK---QRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC---EEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc---eeEE
Confidence 55667888899999999999988875 3566777777 233489999999999999999876543 3568
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCC-ceeEEec---------ceEcCCCCcccccccccCCeEEEE
Q 009480 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---------GKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~-~q~L~~~---------g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
-|..++|...++.+++++|+.|+-..|+++.|+... -..|++. -.+|+..+++.+.......+++++
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 888999999999999999999999999999998543 3446653 268888999988877666666665
No 209
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.93 E-value=2.3e-05 Score=62.14 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=49.3
Q ss_pred ecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccc--cCCCccccccc-cccCceeE
Q 009480 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI-QKESTLHL 145 (533)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L--~d~~~L~~y~i-~~~s~i~l 145 (533)
..++..+.+.+.+++||..+|++|++++|||+++|+|+|.|+.| +.+..-..|.- .+.+.+.|
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L 85 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFV 85 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEE
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEE
Confidence 34577889999999999999999999999999999999999765 45555566643 23334444
No 210
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.93 E-value=3.5e-05 Score=61.86 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.3
Q ss_pred eeeEEEcCCCC-eEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEE
Q 009480 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 229 ~~i~V~~~~g~-~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
+.+.|+..+|. .+.+.|++.++...|....+++.|+++..-+|.|+|+.+.++.|..+.++.+||+|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 55667777884 89999999999999999999999999999999999999999999999999999999764
No 211
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.87 E-value=5.6e-05 Score=70.22 Aligned_cols=93 Identities=14% Similarity=0.268 Sum_probs=79.0
Q ss_pred ecCCeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009480 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 225 ~~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+...+.|.|.. +|..+.+.+++.+.+..|+...+++.|+|+++++|.|+|+.+.++.|..+..+.++|+|.+.....++
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 33445666776 77899999999999999999999999999999999999999999999999999999999998887765
Q ss_pred ceeEEEccCCceEEE
Q 009480 305 MQIFVKTLTGKTITL 319 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~ 319 (533)
. .++.+.+|=.+..
T Consensus 97 ~-t~~~~~sGl~~~v 110 (209)
T 3uf8_A 97 S-TVVTTESGLKYED 110 (209)
T ss_dssp C-CCEECTTSCEEEE
T ss_pred c-cccCCCCceEEEE
Confidence 4 4566666655543
No 212
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.86 E-value=6.7e-05 Score=59.08 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=66.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
..+.|.|+ ..|....+++..++....|+...+++.|++++..++.|+|..+.++.|.++.++++|++|.+.+
T Consensus 20 ~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 34667777 4688999999999999999999999999999999999999999999999999999999998765
No 213
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.83 E-value=1.8e-06 Score=85.64 Aligned_cols=84 Identities=13% Similarity=0.334 Sum_probs=2.6
Q ss_pred ecCCeeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009480 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 225 ~~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+...+.+.|+. +|+.+.+.|++++++..|+...+++.|++++.++|.|+|+.+.++.|.+++++++||+|++...+.+|
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 44456677776 68899999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceeEE
Q 009480 305 MQIFV 309 (533)
Q Consensus 305 ~~i~v 309 (533)
|..|.
T Consensus 97 ~~~Yl 101 (360)
T 3ix6_A 97 MRTYL 101 (360)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 75443
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.68 E-value=6e-05 Score=63.36 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=60.4
Q ss_pred eEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCc-------------------------------------cceEe
Q 009480 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 424 (533)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~-------------------------------------~q~l~ 424 (533)
.+.|++++|...++.|+++.||.+++..|+.+.||+.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 68999999999999999999999999999999999966 33333
Q ss_pred e--cCeeccCCccccccccccCCeEEEEEE
Q 009480 425 F--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 425 ~--~g~~l~d~~tL~~~~i~~~~~l~l~~~ 452 (533)
- ..+-|+++.||.++||..++++.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 225578899999999999999888754
No 215
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.56 E-value=1.1e-05 Score=82.81 Aligned_cols=76 Identities=12% Similarity=0.320 Sum_probs=0.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+.|.|+. +|....+++.+++++..|+...+++.|+|+.+++++|+|+.|.++.|.+++++++|++|++...+.||
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 35566666 67778899999999999999999999999999999999999999999999999999999999999999
No 216
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.53 E-value=0.0002 Score=55.87 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=68.7
Q ss_pred ecceeeeeeecccceEEEeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCccccccCCCCCEEEEEEEe
Q 009480 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (533)
Q Consensus 150 ~~~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~ 225 (533)
.+||.|.|-..+|+..++.|.|+.++.++-++..+++|+.+++..|.|+++.|+-...+.-.|+.+|+.+.++...
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 4678999988999999999999999999999999999999999999999999999999999999999999987643
No 217
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.00028 Score=55.54 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=64.2
Q ss_pred eeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEE
Q 009480 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~ 299 (533)
+.+.|+ .+|..+.|.++.++..+.|....+++.|++++.-+|.|+|.++.++.|.++.++.+||+|..+.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 455566 4689999999999999999999999999999999999999999999999999999999997653
No 218
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.24 E-value=4.5e-05 Score=78.09 Aligned_cols=80 Identities=11% Similarity=0.338 Sum_probs=0.0
Q ss_pred eeeEEEcCCCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCceeE
Q 009480 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 308 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~ 308 (533)
+.+.|+. +|..+.+.|++.++...|+...+++.|+++.+++|.|+|+.+.++.|.++.++.+||+|.++....+|.+.+
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~ 109 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLY 109 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccc
Confidence 4555665 678999999999999999999999999999999999999999999999999999999999988877665433
Q ss_pred E
Q 009480 309 V 309 (533)
Q Consensus 309 v 309 (533)
+
T Consensus 110 ~ 110 (389)
T 4da1_A 110 F 110 (389)
T ss_dssp -
T ss_pred e
Confidence 3
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.96 E-value=0.0019 Score=49.63 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCC-----cEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009480 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~-----~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l 525 (533)
..|+.+.+.++...||..|+..+.+.++++.. +.++.-.+..|.++.+|+||+|.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 47899999999999999999999999988652 223444677889999999999999999875
No 220
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.87 E-value=0.0026 Score=48.90 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=54.5
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCC-----CceeEEecceEcCCCCcccccccccCCeEEE
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~-----~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
-+.|+++.+.+....|+..+++.+.+-++++. ..-+..-.+..|.++++|++|+|.+||.|.+
T Consensus 13 ~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 13 HYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred ccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 37999999999999999999999999888754 2334555799999999999999999999875
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.85 E-value=0.0052 Score=47.91 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC---CCCcccccCCCCCCEEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~I~~~~tl~l~~ 527 (533)
+...|-|+..+|+...-....++||.+|...|.+ .+.++..+.|. |-.+.+. .+.||.|+|+.+.++|.|.-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4457888999999888899999999999999998 67888999997 4567783 46799999999999998864
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.39 E-value=0.014 Score=45.48 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=58.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE--ecCcccc---CCCccccccccccCceeEE
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~~L~~y~i~~~s~i~l~ 146 (533)
..|-||..+|+.+.-....++||.+|..-|.. .+.++....|. |-.+.|. .+.+|.+.|+.+.+++.+-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 46788999999999999999999999999988 67778888888 4468783 4689999999999888774
No 223
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.56 E-value=0.053 Score=44.33 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=62.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC--C-CCcccccCCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--d-~~tL~~~~I~~~~tl~l~~r 528 (533)
....|-|+..+|....-.+..++||.+|...|.+..+.+...+.|. |-.+.+. | ++||.|.|+.+.++|.+...
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 3467888999999899999999999999999999988887888886 4566776 3 67999999999988887653
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.40 E-value=0.075 Score=43.45 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=61.0
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE--ecCcccc--C-CCccccccccccCceeEEE
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--d-~~~L~~y~i~~~s~i~l~~ 147 (533)
...|-||..+|+.+.-....++||.+|.+-|....+.+.....|+ |-.+.+. | ++||.+.|+.+.+++.+..
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 467888999999999999999999999999999888777777787 4577786 3 6899999999888777754
No 225
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.38 E-value=0.024 Score=43.05 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc---CeecCCCCcccccCCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 519 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~---g~~L~d~~tL~~~~I~~ 519 (533)
.++.+.|.....+...+.|+|..++++|-..|+++..+.|++-.|... +.+|+=+++|.||||.+
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 455666777777788999999999999999999999999999999875 44788899999999986
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.19 E-value=0.051 Score=45.52 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=61.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeec--CC-CCcccccCCCCCCEEEEEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L--~d-~~tL~~~~I~~~~tl~l~~ 527 (533)
+...|-|+..+|....-.+..++||.+|...|... +.++..+.|. |-.+.| +| +.||.+.|+.+.++|.|.-
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 45678889999998899999999999999999987 8888889887 457778 33 6899999999988887754
No 227
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.18 E-value=0.067 Score=44.80 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE--ecCccc--cC-CCccccccccccCceeEE
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV 146 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L--~d-~~~L~~y~i~~~s~i~l~ 146 (533)
....|-||..+|..+.-.+..++||.+|..-|... +.++....|+ |-.+.| +| +.+|.+.++.+.+++.+.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 34678889999999999999999999999999887 7777788887 557888 33 789999999988887775
No 228
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.17 E-value=0.4 Score=35.53 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=53.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.|+|.|....+ ...++++...|+++|...+ ++++....+..+|..+..+. -+++|+.|.+.-...||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 47888877653 3567888889999999886 56777777888999887665 46779999999888887
No 229
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.05 E-value=0.28 Score=37.12 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=51.8
Q ss_pred EEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEE
Q 009480 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 241 i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
+.-.++-...+..||..++.+.|++.+.+.|...+..|+++++|.+.+++-...+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 4456677788999999999999999999999999999999999999999998888765
No 230
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.95 E-value=0.16 Score=42.61 Aligned_cols=65 Identities=31% Similarity=0.476 Sum_probs=46.4
Q ss_pred CceEEEEeccCccHHHHHHHhcccc--CCCCC------ceeEEe----cce-EcCCC-------------Cccccccccc
Q 009480 314 GKTITLEVESSDTIDNVKAKIQDKE--GIPPD------QQRLIF----AGK-QLEDG-------------RTLADYNIQK 367 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~I~~~~--~ip~~------~q~L~~----~g~-~L~~~-------------~tl~~y~i~~ 367 (533)
...+.+.|-..|||.++|+||-+.. |+|.+ ...|=+ .|+ .|.|. -||+.|+|++
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 4678899999999999999998633 34443 223433 243 35553 2899999999
Q ss_pred CCeEEEEEEec
Q 009480 368 ESTLHLVLRLR 378 (533)
Q Consensus 368 ~~~l~l~~~~~ 378 (533)
|+++.|.++..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999998754
No 231
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.85 E-value=0.29 Score=39.66 Aligned_cols=63 Identities=37% Similarity=0.438 Sum_probs=45.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE----cCeecCCC-------------CcccccCCCCC
Q 009480 466 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGKQLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~LK~~I~~~~--gip~------~~q~L~~----~g~~L~d~-------------~tL~~~~I~~~ 520 (533)
+..+.++|-..+||.++|++|-+.. |.|. +...|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4457888889999999999997763 5554 3455654 24556552 58999999999
Q ss_pred CEEEEEEe
Q 009480 521 STLHLVLR 528 (533)
Q Consensus 521 ~tl~l~~r 528 (533)
+++-|.-|
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988765
No 232
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.71 E-value=0.24 Score=40.41 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=59.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC--CCCcccccCCCCCCEEEEEE
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--d~~tL~~~~I~~~~tl~l~~ 527 (533)
..+|-|+..+|+...-.+..++||.+|...|... +..+..+.|. |-.+.|. .+.||.+.|+.+.++|.|.-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678888999998888999999999999999975 5567778886 4567776 46899999999999988754
No 233
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.67 E-value=0.21 Score=40.45 Aligned_cols=62 Identities=37% Similarity=0.461 Sum_probs=44.4
Q ss_pred cceEEEeecCCchHHHHHHHhhhh--cCCCC------CCeEEEeC----CeecCCC-------------CccccccCCCC
Q 009480 162 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GKQLEDG-------------RTLADYNIQKE 216 (533)
Q Consensus 162 g~~~~i~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~~----G~~L~d~-------------~tl~~y~I~~~ 216 (533)
+..+++.|..-|||.++|++|-+. .|.|. +...|-+. |+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 456889999999999999999764 35553 34556542 4666551 48999999999
Q ss_pred CEEEEEE
Q 009480 217 STLHLVL 223 (533)
Q Consensus 217 ~~i~l~~ 223 (533)
+++.++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 234
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.21 E-value=0.24 Score=40.37 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=57.7
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE--ecCcccc--CCCccccccccccCceeEEE
Q 009480 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 76 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--d~~~L~~y~i~~~s~i~l~~ 147 (533)
...|-||..+|+.+.-....++||.+|..-|... +..+....|+ |-.+.|. .+.||.+.|+.+.+++.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4567888999999999999999999999999965 5556677776 4577885 46899999999888887643
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.81 E-value=0.26 Score=41.42 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=56.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhh-cCCCCCcEEEE--EcCeecCC-CCcccccCCCCCCEE
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 523 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~-~gip~~~q~L~--~~g~~L~d-~~tL~~~~I~~~~tl 523 (533)
+...|-|+..+|....-.+..++||.+|...|... .+.+...+.|. |-.+.++| +.||.|.|+.+...|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 45778899999998999999999999999999986 34666778886 45778875 689999999885443
No 236
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.50 E-value=0.39 Score=44.37 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=53.2
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEE--E-cCe--ecCC-CCcccccCCCCCCEEEEEEecCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AGK--QLED-GRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~--~-~g~--~L~d-~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++.++..+||.+|+..+....+||++ +.||- + .++ .|+| ++||.++++.++..|.+-.|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567889999999999999999999997 67763 2 232 5665 579999999999999999997666
No 237
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.18 E-value=0.28 Score=41.21 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=54.9
Q ss_pred ceeeeeeecccceEEEeecCCchHHHHHHHhhhhc-CCCCCCeEEE--eCCeecCC-CCccccccCCCCCEEE
Q 009480 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTLH 220 (533)
Q Consensus 152 ~~~i~vk~~~g~~~~i~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~G~~L~d-~~tl~~y~I~~~~~i~ 220 (533)
...|.|+..+|..+.-..+.++||.+|.+.|.... +.+.....|+ |-.+.++| +.||.+.|+.+..++.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 35677888899999999999999999999998863 3555667776 45788865 6999999999865543
No 238
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.05 E-value=0.56 Score=35.48 Aligned_cols=60 Identities=18% Similarity=0.372 Sum_probs=53.4
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
.-.++-++++..||..++.+.|++-+.-.+...+..|+++++|.|.+++-...+.+.+-.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 345677889999999999999999999999999999999999999999998888887754
No 239
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.87 E-value=0.82 Score=42.59 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=53.1
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEEE-c----CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
++..++..+||.+|+..+....+||++ +.||-. . ...|.| +.||.++++.++..|.+-.|..-|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 456789999999999999999999997 577743 3 235665 589999999999999999986655
No 240
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.55 E-value=1.2 Score=36.93 Aligned_cols=65 Identities=28% Similarity=0.377 Sum_probs=48.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE-cC---e-ecCCC-------------CcccccCCC
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQ 518 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~--gip~------~~q~L~~-~g---~-~L~d~-------------~tL~~~~I~ 518 (533)
.+....++|-..+||.++|++|-+.. |+|. ++..|-+ .| + .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34457888889999999999997763 5554 5666655 23 3 36542 589999999
Q ss_pred CCCEEEEEEec
Q 009480 519 KESTLHLVLRL 529 (533)
Q Consensus 519 ~~~tl~l~~rl 529 (533)
+|+++-|..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998653
No 241
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.38 E-value=0.38 Score=36.57 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=55.8
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe---cceEcCCCCcccccccccCCeEEEEEE
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~---~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.|.....+...+.|+|..+..++--.||+|-...|+..-|.. .+..|+-+++|.||+|+. |+....
T Consensus 13 LvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 13 VVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred EEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 4455566677778999999999999999999999999888876 478899999999999985 555543
No 242
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.16 E-value=0.38 Score=44.45 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=52.6
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCC-ceeEEe-----cceEcCC-CCcccccccccCCeEEEEEEec
Q 009480 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-----AGKQLED-GRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~I~~~~~ip~~-~q~L~~-----~g~~L~~-~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
.++..++..+|+.++++.++..++||++ ..||-. ....|++ +.||.+++|.++..|.+-.+..
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 4678889999999999999999999997 688764 2455666 5799999999999999987654
No 243
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=91.11 E-value=0.47 Score=35.64 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=50.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|+|.|+........+++++..||++|-.. .|+|++.-...-+|+.+..+. +.+|++|.+.--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 67777766445567899999999988765 789998887788999887655 2348999877666665
No 244
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.67 E-value=0.51 Score=44.02 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=53.2
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCC-ceeEEe-----cceEcCC-CCcccccccccCCeEEEEEEecC
Q 009480 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-----AGKQLED-GRTLADYNIQKESTLHLVLRLRG 379 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~I~~~~~ip~~-~q~L~~-----~g~~L~~-~~tl~~y~i~~~~~l~l~~~~~~ 379 (533)
.++..++..+|+.++++.++..++||++ .-||-. ....|++ +.||.++++.++..|.+-.+...
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 4567789999999999999999999997 688775 2356665 58999999999999999876543
No 245
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.25 E-value=1.2 Score=36.74 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=49.3
Q ss_pred EEcCCCcEEEEEecCcccHHHHHHHHHhh--hCCCC------ccceEEE----ccEE-ccC--------C-----CCccc
Q 009480 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF----AGKQ-LED--------G-----RTLAD 58 (533)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~--~~i~~------~~q~l~~----~g~~-L~d--------~-----~~l~~ 58 (533)
+...++..+++.|-..|||..+|+||-+. .+.|. ....|-| .|+. |.| + .||++
T Consensus 11 ~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~H 90 (127)
T 3h6n_A 11 FQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAH 90 (127)
T ss_dssp EETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTT
T ss_pred ecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccc
Confidence 34455678889999999999999999664 45554 4455655 3333 654 1 58999
Q ss_pred ccccccccceEEEE
Q 009480 59 YNIQKESTLHLVLR 72 (533)
Q Consensus 59 y~i~~~sti~l~~~ 72 (533)
|+|.+++++-|+.+
T Consensus 91 Y~V~dgatv~l~~~ 104 (127)
T 3h6n_A 91 YKIPEGASLAMSLI 104 (127)
T ss_dssp TTCCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 99999999988754
No 246
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=90.03 E-value=0.78 Score=37.52 Aligned_cols=64 Identities=31% Similarity=0.485 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCcHHHHHHHhhccc--CCCCcc------ceEeec-C---e-eccCC-------------cccccccccc
Q 009480 390 GKTITLEVESSDTIDNVKAKIQDKE--GIPPDQ------QRLIFA-G---K-QLEDG-------------RTLADYNIQK 443 (533)
Q Consensus 390 g~~~~~~v~~~~Tv~~lK~~I~~~~--~vp~~~------q~l~~~-g---~-~l~d~-------------~tL~~~~i~~ 443 (533)
...+.++|-.+|||.++|++|-+.. +.|..+ ..|-|. | . .|.|. .||+.|+++.
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888999999999999987742 455442 235563 2 2 25442 4899999999
Q ss_pred CCeEEEEEEe
Q 009480 444 ESTLHLVLRL 453 (533)
Q Consensus 444 ~~~l~l~~~~ 453 (533)
|+++.|+.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998753
No 247
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=89.21 E-value=1.1 Score=34.78 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=47.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCC-CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 455 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~-~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..|+|.|.. ..++++.. .||++|...+ ++++....+..+|..+..+ ...+.-+++|+.|.+.-...||
T Consensus 19 ~~M~I~vNG-----e~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLNG-----KDVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEETT-----EEECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEECC-----EEEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 456665543 24566776 8999999876 5677777778888887643 3445567889999999888887
No 248
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=88.97 E-value=1.6 Score=36.69 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=46.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE----cCe-ecCCC-------------CcccccCCCCC
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~--gip~------~~q~L~~----~g~-~L~d~-------------~tL~~~~I~~~ 520 (533)
..+.++|-..+||.++|++|-+.. |+|. ++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457888999999999999998774 5654 3445544 243 36553 48999999999
Q ss_pred CEEEEEEec
Q 009480 521 STLHLVLRL 529 (533)
Q Consensus 521 ~tl~l~~rl 529 (533)
+++-|.-|.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998764
No 249
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.93 E-value=1.3 Score=36.25 Aligned_cols=63 Identities=32% Similarity=0.491 Sum_probs=46.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCCCC------cEEEEE-cC---e-ecCCC-------------CcccccCCCCC
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKE--GIPPD------QQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~--gip~~------~q~L~~-~g---~-~L~d~-------------~tL~~~~I~~~ 520 (533)
..+.++|-..+||.++|++|-+.. |.|.+ ...|-+ .| + .|.|. .||+.|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788889999999999997753 56543 455554 23 3 25442 58999999999
Q ss_pred CEEEEEEec
Q 009480 521 STLHLVLRL 529 (533)
Q Consensus 521 ~tl~l~~rl 529 (533)
+++-|..|.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998764
No 250
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.53 E-value=3.7 Score=32.33 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCeeeEEEeCC------C-CEEEEEecCCCcHHHHHHHHhhhcC-C----------CCCcEEEEEcCeecCCCCcccccC
Q 009480 455 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 516 (533)
Q Consensus 455 ~~m~i~v~~~~------g-~~~~~~v~~~~tV~~LK~~I~~~~g-i----------p~~~q~L~~~g~~L~d~~tL~~~~ 516 (533)
.+|+|.|+... | ....++++...||.+|...+..... + ......+.-+|+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46777777532 4 4567888888999999999987741 1 1234556778877753 455
Q ss_pred CCCCCEEEEEEecCCC
Q 009480 517 IQKESTLHLVLRLRGG 532 (533)
Q Consensus 517 I~~~~tl~l~~rl~GG 532 (533)
+++|+.|.+.-...||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 7789999998888887
No 251
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.38 E-value=2.2 Score=35.14 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=43.2
Q ss_pred ceEEEEeccCccHHHHHHHhccc----cCCCCC----ceeEEe----cceEcCC--------------CCcccccccccC
Q 009480 315 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIF----AGKQLED--------------GRTLADYNIQKE 368 (533)
Q Consensus 315 ~~~~~~v~~~~ti~~lK~~I~~~----~~ip~~----~q~L~~----~g~~L~~--------------~~tl~~y~i~~~ 368 (533)
..+.+.|-..|||.++|+||-+. .|.|.+ ...|-+ .+..|.| --||+.|+|++|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56788899999999999998752 477654 233433 1233333 137789999999
Q ss_pred CeEEEEE
Q 009480 369 STLHLVL 375 (533)
Q Consensus 369 ~~l~l~~ 375 (533)
+++-+..
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998864
No 252
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.30 E-value=2.8 Score=34.48 Aligned_cols=61 Identities=34% Similarity=0.510 Sum_probs=43.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhcc----cCCCCcc----ceEeec-C---eeccC----------C----ccccccccccC
Q 009480 391 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIFA-G---KQLED----------G----RTLADYNIQKE 444 (533)
Q Consensus 391 ~~~~~~v~~~~Tv~~lK~~I~~~----~~vp~~~----q~l~~~-g---~~l~d----------~----~tL~~~~i~~~ 444 (533)
..+.++|-.+|||.++|++|-+. .+.|..+ ..|-|. | ..|.| + .||+.|+++.|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888999999999999998764 3666643 234452 2 22322 1 37889999999
Q ss_pred CeEEEEE
Q 009480 445 STLHLVL 451 (533)
Q Consensus 445 ~~l~l~~ 451 (533)
+++.|+.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998763
No 253
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.28 E-value=1.2 Score=34.09 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=41.6
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCe
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 504 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~ 504 (533)
.+|.|.|... -++.+.|++..+..+|..+|.++.++|+++..|.|...
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4567777766 48999999999999999999999999999999998653
No 254
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=87.04 E-value=1.1 Score=33.59 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=47.9
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCccccCCCccccccccccCceeEEEEeecc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|+..+.....++++...||++|-+ ..|+|++.-.+..+|+....+. +.+|+.+.+.---.||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 7888887755566789999999999664 4799998887778998886554 2347777665333333
No 255
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=86.23 E-value=2.7 Score=31.19 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=41.6
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCC--CcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~--~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++ ...||++|...+....++.. ....+.-+|+.+.+ .+.-+++|+.|.+.-...||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3566 67899999999987544322 34556667776442 24457789999999999998
No 256
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=86.11 E-value=1.8 Score=45.99 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=55.9
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec-----ceEcCCCCcccccccccCCeEEEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA-----GKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~-q~L~~~-----g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.+-|..++| ++.+.+++++|+.++-..|+.+.|+.... ..|.|. -.||+..+++.+..++.+..+.|.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4566777888 78899999999999999999999996543 457773 27999999999987777666555443
No 257
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=85.68 E-value=0.99 Score=32.84 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=42.9
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++....||++|...+ ++++....+..+|..+..+ ...+.-+++|+.|.+.-...||
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 35667788999999887 5677777778888877642 2233456779999998888877
No 258
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=85.23 E-value=2.2 Score=41.10 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=53.8
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec-----ceEcCCCCcccccccccCCeEEEEE
Q 009480 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA-----GKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~-q~L~~~-----g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
.+-|..++| ++.+.+++++|+.|+-..|+++.|+.... ..|.+. ..+|+..+++.+..++.+....+..
T Consensus 3 ~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 3 SVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 455677788 78899999999999999999999996554 346662 3689999999998776666555544
No 259
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=84.76 E-value=6.4 Score=28.81 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=43.8
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
|.|.|....++ ..+++....|+.++.+.+ ++++..-....+|..++.+. .+++||.+.+.+.
T Consensus 5 m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 5 MKFTVITDDGK-KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEEEETTEE-EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred EEEEEeCccCc-eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 55655443322 355677789999999876 45666666777888877654 7889999998854
No 260
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=84.59 E-value=2.7 Score=40.92 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=55.2
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCce-eEEec----ceEcCCCCcccccccccCCeEEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA----GKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q-~L~~~----g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
+.+-|..++| ++.+.+++++|+.|+-..|+.+.|+...+. .|.|. ..+|+..+++.+...+.+....+..
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 4566777888 899999999999999999999999975443 46662 4689999999998776666555443
No 261
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.87 E-value=2.1 Score=32.75 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=40.1
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009480 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g 351 (533)
.+.||..-.-|+.+.|.++-+..++.++|.+++++|++.-.|.|+.
T Consensus 5 ~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3556665557999999999999999999999999999999999964
No 262
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=81.73 E-value=6.6 Score=30.84 Aligned_cols=72 Identities=11% Similarity=0.268 Sum_probs=47.0
Q ss_pred cCCeEEEEEecC------C-cEEEEEEcCCCcHHHHHHHHhhhhC-C----------CCCCeEEEecCccccCCCccccc
Q 009480 74 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 135 (533)
Q Consensus 74 ~~~m~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~g~~L~d~~~L~~y 135 (533)
.++|.|+|+... | ....+++....||.+|.+.+..... + ....-.+..||+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 367899998642 3 4678888888999999999876631 1 1123445567776642 56
Q ss_pred cccccCceeEEEEee
Q 009480 136 NIQKESTLHLVLRLR 150 (533)
Q Consensus 136 ~i~~~s~i~l~~~~~ 150 (533)
-+++|+.|.+.....
T Consensus 82 ~L~dGDeV~i~ppv~ 96 (98)
T 1vjk_A 82 ELKDGDVVGVFPPVS 96 (98)
T ss_dssp BCCTTCEEEEESCC-
T ss_pred CCCCCCEEEEECCCC
Confidence 678888887754433
No 263
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=80.30 E-value=7 Score=29.96 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=45.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcC-CC----------CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKEG-IP----------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~g-ip----------~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
....++++...||.+|...+..... +. .....+.-||+.... +.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567888888999999999988752 10 012566778887765 3446779999999999988
No 264
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.12 E-value=1.6 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 502 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~ 502 (533)
..+.|..++|+.+|+..|+...|+|+++|||-.+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 5689999999999999999999999999998654
No 265
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=78.85 E-value=4.5 Score=30.37 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=42.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcC-----CCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...++ ....||.+|...+..... ++.....+..+|+.... +.-+++|+.|.+.-...||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34455 567899999999986642 23334567788887754 3457789999999888887
No 266
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=78.06 E-value=4.2 Score=39.21 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=53.5
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec-----ceEcCCCCcccccccccCCeEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA-----GKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~-q~L~~~-----g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
+.+-|..++|...++.+++++|+.|+-..++++.|+.... ..|.|. -.+|+..+++.+.......+++++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 5677888999999999999999999999999999996544 457763 378999999988743323344443
No 267
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=77.90 E-value=11 Score=29.16 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=43.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCC------C-------CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 466 GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~LK~~I~~~~gi------p-------~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
|....+++ ...||++|...+..++.- . .....+.-+|+...+..- .+.-+++|+.|.+.-...||
T Consensus 16 g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 16 GGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp TTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred CCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 43334664 567999999999987520 0 113566778887664222 23457889999999999998
No 268
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=76.84 E-value=9 Score=31.06 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=53.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhh--------cCCCCCcEEEEEcCeecC--CCCcccccCCCCCCEEEEEEecCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~--------~gip~~~q~L~~~g~~L~--d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+.+-+++.++.++|-+.+-.- ..|+++.=.|..+|++.. .+++|++.|+..-|.|+...+-+-|
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G 113 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKG 113 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCc
Confidence 5789999999999998777543 467888889999999886 4689999999999999887654444
No 269
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=76.84 E-value=3.7 Score=30.52 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=43.5
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..++ ...||++|... .++++...-+..+|..+..+ ..++.-+++|+.|.+.-...||
T Consensus 9 ~~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 9 QREV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp EECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred EEEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 3445 67899999775 57888888888898887643 3455567789999999988888
No 270
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=76.22 E-value=15 Score=28.75 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=55.8
Q ss_pred eEEEEcCCC---cEEEEEecCcccHHHHHHHHHhhhCCCCcc--ceEEEcc---EEccCCCCcccccccccccceEEE
Q 009480 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~--q~l~~~g---~~L~d~~~l~~y~i~~~sti~l~~ 71 (533)
.|+|.+++. ...+++|...--|..+..|+-++.+++.+- --|.+.- ..|.-.-||..|+|+-.+.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 589999775 678899999999999999999999887654 3344422 346778899999999999988764
No 271
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=75.86 E-value=7.9 Score=40.74 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=45.8
Q ss_pred CceEEEEeccCccHHHHHHHhcc--ccCCCCC------ceeEEe----cce-EcCCC-------------Cccccccccc
Q 009480 314 GKTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIF----AGK-QLEDG-------------RTLADYNIQK 367 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~I~~--~~~ip~~------~q~L~~----~g~-~L~~~-------------~tl~~y~i~~ 367 (533)
...+.+.|-..|||.++|+||-+ --|.|.+ +..|-+ .|+ .|.|. -||++|+|++
T Consensus 273 ~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 273 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 35688889999999999999985 2255544 333444 133 35553 3899999999
Q ss_pred CCeEEEEEEec
Q 009480 368 ESTLHLVLRLR 378 (533)
Q Consensus 368 ~~~l~l~~~~~ 378 (533)
|+++.|.++..
T Consensus 353 ga~v~L~p~~~ 363 (644)
T 3hm6_X 353 GATVALVPCLT 363 (644)
T ss_dssp TCEEEEEEC--
T ss_pred CcEEEEEeccc
Confidence 99999987653
No 272
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=74.72 E-value=3.2 Score=31.32 Aligned_cols=58 Identities=12% Similarity=0.285 Sum_probs=44.2
Q ss_pred EEEec--CCCcHHHHHHHHhhhcCCC-CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~--~~~tV~~LK~~I~~~~gip-~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..+++ ...||++|...+ |++ +...-+..+|..+..+ ..++.-+++|+.|.+.-...||
T Consensus 9 ~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 45566 678999998764 677 7667778899888654 4556667789999998888887
No 273
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.46 E-value=4.8 Score=29.90 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=42.8
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcE--EEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q--~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
...++++...||++|...+..... .+... .+..+|+....+ .-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 455667778899999999987642 01223 677788887654 456779999998888887
No 274
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=74.04 E-value=3.3 Score=34.66 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=33.3
Q ss_pred cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccE
Q 009480 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (533)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~ 48 (533)
...++.|..+.|+.++|..|.+..|+|++.|+|+.--.
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~ 93 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 93 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeec
Confidence 34578999999999999999999999999999987433
No 275
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.60 E-value=8.2 Score=27.58 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
+++ ...||++|...+ ++++....+..+|..+..+ .-.+.-+++|+.|.+.-...||
T Consensus 9 ~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred EEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 345 678999999887 4667777778888877643 2334457789999999888887
No 276
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=72.42 E-value=16 Score=34.80 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEE---cCe--ecCCCCcccccCCCCCCEEEEEEec
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~~---~g~--~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
++.+.|..++| +..+.+++++|+.++-..|+...|+.... +-|.+ +|. -|+.++++.+.++..+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 35677788888 67899999999999999999999986543 45555 233 3677888998877666666666553
No 277
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=71.75 E-value=13 Score=27.37 Aligned_cols=70 Identities=14% Similarity=0.305 Sum_probs=42.2
Q ss_pred eeeeeeeccc-ceEEEeecCCchHHHHHHHhhhhcCCCC--CCeEEEeCCeecCCCCccccccCCCCCEEEEEEEecC
Q 009480 153 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (533)
Q Consensus 153 ~~i~vk~~~g-~~~~i~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~G~~L~d~~tl~~y~I~~~~~i~l~~~~~~ 227 (533)
|.|+|+.+.. +.-.+++ ...||.+|.+.+....++.. ..-.+.-+|+...+ .++-+++|++|.++...+|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 3455555532 1123556 56799999999976533322 23445556665332 3567899999988765444
No 278
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=70.78 E-value=15 Score=35.40 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=57.4
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEe
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~--~g~--~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
+.++.+.|..++| +..+.+++++|+.+|-..|+...|+.. +.+-|.+ .|. -|+.++++.+.++..+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4667788888898 788999999999999999999999874 3445655 333 377788999987766666666555
Q ss_pred c
Q 009480 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 279
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=70.52 E-value=20 Score=27.99 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=54.3
Q ss_pred eEEEEecCC---cEEEEEecCCCcHHHHHHHhhcccCCCCcc--ceEeecCe---eccCCccccccccccCCeEEEEEE
Q 009480 382 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAGK---QLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 382 ~i~vk~~~g---~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~--q~l~~~g~---~l~d~~tL~~~~i~~~~~l~l~~~ 452 (533)
+|+|.+.+. ...++.|..+.-|+.++.++-++.+++..= -.|-|..+ .++-..+|..||++.++.+++.+.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 467777553 568899999999999999999887766542 22335443 378899999999999999888753
No 280
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=68.95 E-value=11 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=37.4
Q ss_pred eEEEc-cCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEecce
Q 009480 307 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 352 (533)
Q Consensus 307 i~v~~-~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~-q~L~~~g~ 352 (533)
+-||. ++|..+.+.+.++-+-+++.+++++..++++++ ..+.|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 55665 678999999999999999999999999998766 45666443
No 281
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=68.44 E-value=16 Score=38.43 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=45.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhccc--CCCCc------cceEeec----Ce-eccCC-------------cccccccccc
Q 009480 390 GKTITLEVESSDTIDNVKAKIQDKE--GIPPD------QQRLIFA----GK-QLEDG-------------RTLADYNIQK 443 (533)
Q Consensus 390 g~~~~~~v~~~~Tv~~lK~~I~~~~--~vp~~------~q~l~~~----g~-~l~d~-------------~tL~~~~i~~ 443 (533)
...+.++|-++|||.++|++|-+.. ++|.. ...|-|. |. .|.|. .||+.|+++.
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568889999999999999988742 44443 3335563 22 35442 4899999999
Q ss_pred CCeEEEEEEec
Q 009480 444 ESTLHLVLRLR 454 (533)
Q Consensus 444 ~~~l~l~~~~~ 454 (533)
|+++.|+.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999987653
No 282
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=68.43 E-value=21 Score=37.50 Aligned_cols=63 Identities=29% Similarity=0.493 Sum_probs=46.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCC------CCcEEEEE-c---Ce-ecCCC-------------CcccccCCCCC
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~--gip------~~~q~L~~-~---g~-~L~d~-------------~tL~~~~I~~~ 520 (533)
....++|-..+||.++|++|-+.. |+| +++..|-+ . |+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 567888889999999999998763 554 45555654 2 33 35442 58999999999
Q ss_pred CEEEEEEec
Q 009480 521 STLHLVLRL 529 (533)
Q Consensus 521 ~tl~l~~rl 529 (533)
+++-|.-|.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999998765
No 283
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=68.01 E-value=19 Score=27.81 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=36.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEcCe
Q 009480 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 504 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~~~g~ 504 (533)
|+|.+. ..|..+.+.++++.+..+|..++.+..+++..+ +.+.|-..
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 444333 457889999999999999999999999998655 66766433
No 284
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=65.46 E-value=20 Score=27.26 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=41.0
Q ss_pred CeEEEEeecCCcHHHHHHHhhhhcC-C-----CC-----CCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 239 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~g-i-----p~-----~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
....+++....||++|.+.+..+++ + .. ....+.-||+..+. ++.+++||.|.+++.
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPP 85 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECC
Confidence 5677888778899999999988763 1 11 12455568877654 567899999988754
No 285
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=65.12 E-value=13 Score=27.75 Aligned_cols=55 Identities=4% Similarity=0.088 Sum_probs=38.5
Q ss_pred eEEEEeecCCcHHHHHHHhhhhcC-----CCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 240 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
...++ ....||.+|.+.+..+++ ++........||+... .+..+++||.|.++..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPP 77 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEECC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeCC
Confidence 55555 567799999999886643 3333456667887764 3567899999988753
No 286
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=63.43 E-value=24 Score=26.74 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.2
Q ss_pred EEEecCCCcHHHHHHHHhhhcC------C-----CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~g------i-----p~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.+++....||.+|...+..... + ......+..+|+...... -.+.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987741 1 113456777887765221 123457889999998888887
No 287
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=63.02 E-value=19 Score=37.88 Aligned_cols=63 Identities=30% Similarity=0.478 Sum_probs=45.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE--c--Ce-ecCCC-------------CcccccCCCCC
Q 009480 467 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF--A--GK-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~LK~~I~~~~--gip~------~~q~L~~--~--g~-~L~d~-------------~tL~~~~I~~~ 520 (533)
..+.++|-..+||.++|++|-+.. |+|. ++..|-+ + |+ .|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347788889999999999998542 5654 4445544 2 33 35542 58999999999
Q ss_pred CEEEEEEec
Q 009480 521 STLHLVLRL 529 (533)
Q Consensus 521 ~tl~l~~rl 529 (533)
+++-|+-|.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999987654
No 288
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.25 E-value=26 Score=37.04 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEEc---C--eecCCCCcccccCCCCCCEEEEEEe
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~~---g--~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
.++.+.|..++| ++.+.|+++.|+.+|-..|+...|+.- +.+-|.+. | .-|+.++++.+.++..+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 456777888888 678999999999999999999999864 34566653 2 2467788899888777776666665
Q ss_pred c
Q 009480 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 289
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=60.74 E-value=27 Score=34.60 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=38.0
Q ss_pred cCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEE
Q 009480 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (533)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~ 49 (533)
..+-....+.+.+.+|+.+++++++++.+++++.|.+++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 3455677899999999999999999999999999999998843
No 290
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=60.23 E-value=52 Score=26.51 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=44.6
Q ss_pred CeEEEEEecC------C--cEEEEEEcC---CCcHHHHHHHHhhhhCCCCCCeEE-------------EecCccccCCCc
Q 009480 76 GMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRL-------------IFAGKQLEDGRT 131 (533)
Q Consensus 76 ~m~i~vk~~~------g--~~~~l~v~~---~~tV~~lK~~i~~~~gip~~~q~L-------------~~~g~~L~d~~~ 131 (533)
.|.|+|+..+ | +.+.++++. ..||.+|-+.+.+.. |..+.+| +.||+..+-- -
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELL-G 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHH-C
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeecc-C
Confidence 4888888643 3 366788884 369999999998765 2212222 2333211000 0
Q ss_pred cccccccccCceeEEEEeecc
Q 009480 132 LADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 132 L~~y~i~~~s~i~l~~~~~~~ 152 (533)
=.+|-+++|+.|.+.....||
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 135778899998887766666
No 291
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=60.12 E-value=2.8 Score=31.44 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=41.2
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.++++...||.+|...+. +|++...+..+|+.+..+ .-+++|+.|.+.-...||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 445677789999988764 667666788899888765 456779999888887777
No 292
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=59.46 E-value=24 Score=27.74 Aligned_cols=59 Identities=10% Similarity=0.264 Sum_probs=41.5
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc----Ce--------ecCC------CCcccccCCCCCCEEEEE
Q 009480 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK--------QLED------GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~----g~--------~L~d------~~tL~~~~I~~~~tl~l~ 526 (533)
...++++++.|.++|-..+.+.-.+....=.|... ++ .|+. +++|.+.|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35689999999999999999964433322233333 33 3332 367999999999999885
No 293
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=56.95 E-value=60 Score=24.45 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=49.3
Q ss_pred EEEEEecCCCcHHHHHHHHhhhc-C--C---CCCcEEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 009480 468 TITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~-g--i---p~~~q~L~~~g--~~L~d~~tL~~~~I~~~~tl~l~~r 528 (533)
...+.|+..+|+.++=++++... | + |-.-.+..++| ..+..+.|+++.||.+-+.|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 35678999999999999988764 3 2 22246778888 8999999999999999999988753
No 294
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=55.97 E-value=55 Score=24.95 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=38.1
Q ss_pred EEEeecCCcHHHHHHHhhhhcC-----C-CC--C-----CeeEEecCccccCCccccccccCCCceEEEEEeec
Q 009480 242 TLEVESSDTIDNVKAKIQDKEG-----I-PP--D-----QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302 (533)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~g-----i-p~--~-----~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~ 302 (533)
.+++ ...||++|.+.+..+++ + .. + ...+..||+....... .++.+++||+|.+++...
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVA 91 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCC
Confidence 3553 45799999999998764 1 10 1 2445557776654322 246789999998876443
No 295
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.43 E-value=9.7 Score=41.24 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=41.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc-CeecCCCCccccc
Q 009480 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 515 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~-g~~L~d~~tL~~~ 515 (533)
..+...+.+.+++|+++++..|++.+|||++.|.+++. |..++......+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34456788999999999999999999999999999885 5566666666665
No 296
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=54.17 E-value=37 Score=32.45 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=53.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEc---C--eecCCCCcccccCCCCCCEEEEEE
Q 009480 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~~~---g--~~L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
...+.+.|..++|....+.|+++.|+.+|-..|++..|+.... +-|.+. | .-|+.++++.+.......++++.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 3567788889999999999999999999999999999987544 556553 2 246777788877544444555544
Q ss_pred e
Q 009480 528 R 528 (533)
Q Consensus 528 r 528 (533)
+
T Consensus 95 k 95 (296)
T 3qij_A 95 K 95 (296)
T ss_dssp S
T ss_pred E
Confidence 4
No 297
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=53.86 E-value=11 Score=30.53 Aligned_cols=66 Identities=15% Similarity=0.354 Sum_probs=38.3
Q ss_pred cceEEEeecC----CchHHHHHHHhhhhcCCCCCCeEEEeC-C--e------ecCCCCcc-----ccccCCCCCEEEEEE
Q 009480 162 GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIFA-G--K------QLEDGRTL-----ADYNIQKESTLHLVL 223 (533)
Q Consensus 162 g~~~~i~v~~----~~tV~~lK~~i~~~~gip~~~q~L~~~-G--~------~L~d~~tl-----~~y~I~~~~~i~l~~ 223 (533)
|+...++++. ..||.+|-+.+.+.. |...-+|+-. | . .|-|++.. .+|-+++|++|.++.
T Consensus 20 g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 20 AKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp TSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 3455666663 248999988887764 2222233212 2 1 23233222 358899999998877
Q ss_pred EecCCe
Q 009480 224 RLRGGM 229 (533)
Q Consensus 224 ~~~~~~ 229 (533)
+..+|.
T Consensus 98 tlhg~~ 103 (110)
T 2k9x_A 98 TLHGGL 103 (110)
T ss_dssp CCCCC-
T ss_pred CCcccc
Confidence 766654
No 298
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=52.97 E-value=66 Score=25.90 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=45.0
Q ss_pred CeeeEEEeC------CC--CEEEEEecC---CCcHHHHHHHHhhhcCCCCCcEEEEE-cCe------ecCCCC---cc--
Q 009480 456 GMQIFVKTL------TG--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-- 512 (533)
Q Consensus 456 ~m~i~v~~~------~g--~~~~~~v~~---~~tV~~LK~~I~~~~gip~~~q~L~~-~g~------~L~d~~---tL-- 512 (533)
+|.|.|+.. .| +.+.++++. ..||.+|...+.+.+ |....+|+. +|+ .+-|+. -|
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~g 88 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGE 88 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCT
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCC
Confidence 466666643 24 356788884 369999999999876 111222221 111 111222 11
Q ss_pred cccCCCCCCEEEEEEecCCC
Q 009480 513 ADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 513 ~~~~I~~~~tl~l~~rl~GG 532 (533)
.++-+++|+.|.+.-.+-||
T Consensus 89 ldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 89 LDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTCBCCSSEEEEEEECSCCC
T ss_pred cCcCCCCCCEEEEeCCCCCC
Confidence 34668889999998888888
No 299
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=52.67 E-value=30 Score=27.31 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=32.8
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCc
Q 009480 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 419 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~ 419 (533)
.-|.|-+.+|...++.|++++|+.|+-+.+..+.++...
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 345566789999999999999999999999999876544
No 300
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=52.20 E-value=29 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEe-------cCccccCCCcccc
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLAD 134 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~g~~L~d~~~L~~ 134 (533)
+..-|.|-..+|..-++.|++++|+.++-+.+..+.+...+.-.-++ .-+.++|+..+-+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 34556677789999999999999999999999999876543322222 2356777654443
No 301
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=51.34 E-value=68 Score=24.85 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=24.9
Q ss_pred eEEEEEec------C--CcEEEEEEc--CCCcHHHHHHHHhhhh
Q 009480 77 MQIFVKTL------T--GKTITLEVE--SSDTIDNVKAKIQDKE 110 (533)
Q Consensus 77 m~i~vk~~------~--g~~~~l~v~--~~~tV~~lK~~i~~~~ 110 (533)
|+|+|+.. . .+...+++. ...||.+|.+.+.++.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 66777742 2 245777776 6789999999998775
No 302
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=50.57 E-value=25 Score=24.93 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=40.0
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEE
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.+|+.+.+ ...|+.++.+.+. +++..-....+|..++.+ .-.++.+++||.+.+.+.
T Consensus 3 ~vNg~~~~~---~~~tv~~ll~~l~----~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 3 WLNGEPRPL---EGKTLKEVLEEMG----VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EETTEEECC---TTCCHHHHHHHHT----BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEEC
T ss_pred EECCEEEEc---CCCcHHHHHHHcC----CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEee
Confidence 346776654 6689999988774 556655666677765532 334567999999999853
No 303
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=50.50 E-value=23 Score=26.02 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=38.9
Q ss_pred CeEEEEeecCCcHHHHHHHhhhhcCCCCCCe--eEEecCccccCCccccccccCCCceEEEEEe
Q 009480 239 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q--~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
....+++....||.+|.+.+...++- ...- ....||+.... +..+++||.|.++..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 35566777778999999998776421 1222 56678887754 367889999988743
No 304
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=49.89 E-value=44 Score=25.52 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=38.9
Q ss_pred CCCeEEEEeecC-CcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 237 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 237 ~g~~i~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|+.+ ++... .||.+|.+.+ ++++..-....||+.+..+ ...+..+++||.|.++..
T Consensus 26 NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE
T ss_pred CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc
Confidence 45544 44565 7999998766 5666666677788876443 333457899999988754
No 305
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=47.46 E-value=49 Score=23.73 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEE
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
|.|.|..++|+. .++..+.|+.++-+.+....+ ..--....+|+..+- ++.+++++.+.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEE
Confidence 457777778886 456788999999988854321 111112335665443 46677888888874
No 306
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=46.20 E-value=64 Score=24.46 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCC
Q 009480 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 112 (533)
Q Consensus 75 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi 112 (533)
..|.|.+- ..+..|.+.|+++-+..+|+.||.++..+
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45666664 45678999999999999999999999887
No 307
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=45.50 E-value=48 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=32.7
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE
Q 009480 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 500 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~ 500 (533)
.|.|.+-.. +..+.+.|+++.+.++|+.+|..+..+. .+.++
T Consensus 12 ~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 12 TTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred ceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 455555444 5689999999999999999999999984 44444
No 308
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=45.22 E-value=18 Score=28.79 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=53.6
Q ss_pred eEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc--ceEEEcc---EEccCCCCcccccccccccceEEE
Q 009480 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~--q~l~~~g---~~L~d~~~l~~y~i~~~sti~l~~ 71 (533)
.|+|.+++ ...+++|...--|..+..|+-++.+++.+. --|.+.- ..|.-.-||..|+|+-.+.+++..
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 45676776 788899999999999999999998877643 3344432 346778899999999999988754
No 309
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=45.08 E-value=19 Score=28.96 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=41.9
Q ss_pred CeeeEEEcCC------CCeEEEEeec----CCcHHHHHHHhhhhcCCCCCCeeEE-ecC--c------cccCC---ccc-
Q 009480 228 GMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDG---RTL- 284 (533)
Q Consensus 228 ~~~i~V~~~~------g~~i~~~v~~----~~tV~~lK~~I~~~~gip~~~q~L~-~~g--~------~L~d~---~tl- 284 (533)
.|.|.|+... |+...+++.. ..||++|-+.+.+++. ...-.|. -+| . .|-++ +-+
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 3556666432 4555677663 2499999988888752 1111111 112 1 12122 222
Q ss_pred -cccccCCCceEEEEEeecCC
Q 009480 285 -ADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 285 -~~~~i~~~~ti~l~~~~~~~ 304 (533)
.+|.+++||+|.++..+.++
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35789999999887666554
No 310
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=44.09 E-value=73 Score=31.34 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEecCc-c-ccCCCcccccc
Q 009480 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-Q-LEDGRTLADYN 136 (533)
Q Consensus 85 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-~-L~d~~~L~~y~ 136 (533)
.-....+.+.+.+|+.++++++++..+++++.|.+++.+. . ++.....+.|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 3456788899999999999999999999999999999983 3 34445555553
No 311
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=44.02 E-value=30 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=32.3
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEccCC
Q 009480 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~d~ 53 (533)
|.|.|..++|+.. ++....|+.++.+.+....+-. .--...+|+..+-+
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~~~--~vaa~vNg~lvdl~ 49 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLGDH--CIGAKVNHKLVPLS 49 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHHHT--EEEEEETTEECCTT
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccccc--eEEEEECCEEeCCC
Confidence 8899998899874 5667789999988885432211 11124577765554
No 312
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.54 E-value=66 Score=25.48 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=48.3
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEE---ecCc--cccCCCccccccccccCceeEEEE
Q 009480 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~--~L~d~~~L~~y~i~~~s~i~l~~~ 148 (533)
..|-..+..-+++.+..+.|+.+++..+.++.+...+.+.|+ ++|. .|+++..--.-.+.-+..+++..+
T Consensus 12 ~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 344456667788889999999999999999999877788887 6673 345543333333444555665543
No 313
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=43.43 E-value=1e+02 Score=23.19 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=49.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhc-CC--C--CCcEEEEEcCee--cCCCCcccccCCCCCCEEEEEE
Q 009480 468 TITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 468 ~~~~~v~~~~tV~~LK~~I~~~~-gi--p--~~~q~L~~~g~~--L~d~~tL~~~~I~~~~tl~l~~ 527 (533)
...+-|+..+|+.++=++++... |. + +.--+...+|.. +..+.|+++.||.+-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 35678999999999999988764 33 1 235788899997 9999999999999999998865
No 314
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.30 E-value=74 Score=25.19 Aligned_cols=66 Identities=9% Similarity=0.213 Sum_probs=48.4
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhcccCCCCccceEe---ecCee--ccCCccccccccccCCeEEEEEEe
Q 009480 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLRL 453 (533)
Q Consensus 388 ~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~---~~g~~--l~d~~tL~~~~i~~~~~l~l~~~~ 453 (533)
.+....++.++.+.|+++++..+.++++...+.+.|. ++|.. |+++..-..=.+..+..|++..+.
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 17 TEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred ccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 3556678899999999999999999999887777777 56643 565554444455566777777653
No 315
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=43.30 E-value=1e+02 Score=23.25 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=46.8
Q ss_pred EEEEEcCCCcHHHHHHHHhhhh-C--C---CCCCeEEEecC--ccccCCCccccccccccCceeEEE
Q 009480 89 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~-g--i---p~~~q~L~~~g--~~L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.-+.|+.++|+.++-+++.... | + |..-.++.++| +.+..+.|+++-||.+-..+.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4567999999999999998653 4 2 22346777999 889999999999999888777654
No 316
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.23 E-value=21 Score=26.32 Aligned_cols=58 Identities=3% Similarity=0.082 Sum_probs=41.2
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEEEEe
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~ 377 (533)
.+|+...+ ...|+.++-+. +++++..--...+|..++. ....++.+++||.+.+...-
T Consensus 5 vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 5 INGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp ETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCC
T ss_pred ECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccc
Confidence 45775554 66899998764 5677777777778876643 24556789999999998543
No 317
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=42.96 E-value=51 Score=27.08 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHhhhcCCCCCcEEEEE--cCeecC-----C--CCcccccCCCCCCEEEEE
Q 009480 475 SSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 475 ~~~tV~~LK~~I~~~~gip~~~q~L~~--~g~~L~-----d--~~tL~~~~I~~~~tl~l~ 526 (533)
...|..+|-..+..++|.+- ...+.- +.+.|. | +++|++.|++.|+.|.+.
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 35699998888888888864 555542 334443 2 479999999999988764
No 318
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=42.18 E-value=21 Score=38.58 Aligned_cols=54 Identities=28% Similarity=0.554 Sum_probs=45.7
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe-cceEcCCCCcccccc
Q 009480 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 364 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~-~g~~L~~~~tl~~y~ 364 (533)
....+..++.+.+..|+.+++..|.+..|||++.|.+++ +|..+++......|.
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 455666788999999999999999999999999999888 577777777777653
No 319
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.24 E-value=75 Score=23.82 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=36.7
Q ss_pred EeecCCcHHHHHHHhhhhcC------C-----CCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 244 EVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 244 ~v~~~~tV~~lK~~I~~~~g------i-----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
++....||.+|.+.+..+++ + .........||+...... -.++.+++||+|.++..
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECC
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCC
Confidence 44556799999999887752 1 013345666887665321 23457899999988753
No 320
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=41.13 E-value=1.1e+02 Score=23.65 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=39.9
Q ss_pred CEEEEEec--CCCcHHHHHHHHhhhcCCCCCc-------------EEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009480 467 KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 467 ~~~~~~v~--~~~tV~~LK~~I~~~~gip~~~-------------q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~G 531 (533)
+...++++ ...||++|...+.++..-.... ..+.-+++..+-.. =.++-+++|+.|.+.-...|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~-~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG-EKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT-GGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC-CCCcCcCCCCEEEEECCCCC
Confidence 34566666 6789999999999876311111 11333443221000 03456888999999988888
Q ss_pred C
Q 009480 532 G 532 (533)
Q Consensus 532 G 532 (533)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 7
No 321
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=38.62 E-value=48 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCeEEEEEecC-------CcEEEEEEcCCCcHHHHHHHHhhhhCCC
Q 009480 75 GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (533)
Q Consensus 75 ~~m~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (533)
+.+.|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44566665442 5579999999999999999999998765
No 322
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=37.81 E-value=1e+02 Score=23.43 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=45.0
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCc---cceEEEccEEccCCCCcc-------cccccccccceEE
Q 009480 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD---QQRLIFAGKQLEDGRTLA-------DYNIQKESTLHLV 70 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~---~q~l~~~g~~L~d~~~l~-------~y~i~~~sti~l~ 70 (533)
.|.+++.+|.-+- |.+...|....+-.+.-+|++++.+ .-.| -+.|++++-|. .|-+.......++
T Consensus 7 RVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~~~~~y~L---~Q~Lp~~kEL~iPd~aNvfYAm~~~~~~~Fv 83 (87)
T 1lfd_A 7 RVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYEL---LQIISEDHKLKIPENANVFYAMNSAANYDFI 83 (87)
T ss_dssp EEEESSCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEEE---EEESSSSCEEECCTTSBHHHHSCTTSCCEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEE---EEEcCCCCEEecCCCccEEEEEcCCCCcceE
Confidence 4667778887665 8899999999999999999998744 2233 24555544322 3444444555555
Q ss_pred EE
Q 009480 71 LR 72 (533)
Q Consensus 71 ~~ 72 (533)
++
T Consensus 84 LR 85 (87)
T 1lfd_A 84 LK 85 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 323
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=37.07 E-value=3e+02 Score=26.78 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=105.7
Q ss_pred ccccCCCCCEEEEEEEecCCee------------eEEEcCCCCeEEEE----ee-cCCcHHHHHHHhhhhcCCCCCCeeE
Q 009480 209 ADYNIQKESTLHLVLRLRGGMQ------------IFVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRL 271 (533)
Q Consensus 209 ~~y~I~~~~~i~l~~~~~~~~~------------i~V~~~~g~~i~~~----v~-~~~tV~~lK~~I~~~~gip~~~q~L 271 (533)
.+|-|.+|++|.+.+-...... -+....+| +|.+. |. ...|+.++++.|.++..-
T Consensus 63 ~~Y~igpGD~L~I~V~~~pel~~~~~~~~~~~~~~~~V~~dG-~I~~P~iG~v~vaG~T~~e~~~~I~~~L~~------- 134 (359)
T 2j58_A 63 YEYRIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNSDG-TIFYPYIGKVQVAGKTVSQVRQDITSRLTT------- 134 (359)
T ss_dssp CCCCCCTTCEEEEEETTCHHHHCTTCSSSCHHHHSEECCTTS-EEEETTTEEEECTTCCHHHHHHHHHHHHTT-------
T ss_pred CCceeCCCCEEEEEEecCccccccccccccccccCcEECCCC-eEEecccceEEECCCCHHHHHHHHHHHHHH-------
Confidence 4699999999998763211110 01122233 44432 22 566999999999987521
Q ss_pred EecCccccCCccccccccCCCceEEEEEeecCCceeEEEccCCceEEEEecc-CccHHHHHHHhccccCC-CCCceeEEe
Q 009480 272 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGI-PPDQQRLIF 349 (533)
Q Consensus 272 ~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~~~v~~-~~ti~~lK~~I~~~~~i-p~~~q~L~~ 349 (533)
|= ....+.+.+.......++|.-.=.+.-.+.+.+ ..|+.+.-++---...- ....-.|.-
T Consensus 135 ---------------~~--~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~~AGG~t~~a~~~~V~l~R 197 (359)
T 2j58_A 135 ---------------YI--ESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAINAAGGLAADADWRNVVLTH 197 (359)
T ss_dssp ---------------TS--SSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHHHHHTTSBCTTBCTTCEEEEE
T ss_pred ---------------hc--cCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHHHHHcCCCCcccccceEEEEE
Confidence 11 123344444334455788876666666778877 88999887775532211 222333444
Q ss_pred cceE--------cCCCCcccccccccCCeEEEEEEecCCeeEEEEecCCcEEEEEec-CCCcHHHHHHHhh
Q 009480 350 AGKQ--------LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQ 411 (533)
Q Consensus 350 ~g~~--------L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~-~~~Tv~~lK~~I~ 411 (533)
.|+. +.++..-.++.+++||++++-.+ ....++|.-.-++.-.++++ ++.|+.|+-...-
T Consensus 198 ~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~--~~~~v~V~GeV~~pg~~~l~~~~~tl~eal~~AG 266 (359)
T 2j58_A 198 NGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN--DDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAE 266 (359)
T ss_dssp TTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG--GGCEEEEEESBSSCEEEECBTTBCBHHHHHHHTT
T ss_pred CCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec--eeeeEEeeccccCcceEeecCCCCCHHHHHHhCC
Confidence 4442 23455566788999999999643 22346665444556678885 6999999877653
No 324
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=35.44 E-value=54 Score=34.36 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=42.9
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCC--CceeEEec----ceEcCCCCccc
Q 009480 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA----GKQLEDGRTLA 361 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~--~~q~L~~~----g~~L~~~~tl~ 361 (533)
.+-|..++|...++.+++++|++|+-..++++.|+.. +-..|++. .++|+++..+.
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~ 279 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVA 279 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHH
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchh
Confidence 4556778999999999999999999999999999974 34456652 24466665543
No 325
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=34.76 E-value=52 Score=23.30 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=38.2
Q ss_pred CCCeEEEEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009480 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 237 ~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|+.+ ++....||.+|.+.+ ++++..-....||+...... ..+..+++||.|.++..
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTCCCCTTEEECEEES
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCcCCCCCCEEEEEee
Confidence 45544 445678999998876 45666666677887764322 23456889999987753
No 326
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=34.01 E-value=14 Score=29.33 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=47.3
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCC--CCcEEEEEcCe---ecCCCCcccccCCCCCCEEEEE
Q 009480 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGK---QLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip--~~~q~L~~~g~---~L~d~~tL~~~~I~~~~tl~l~ 526 (533)
.|+|...+ ...++.|..+.-|..+..++-+..+++ ++..-|-..-+ .+.-..||..|||+.++.++..
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 34444433 557888999999999999999887665 33333333222 3567789999999998877643
No 327
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=33.47 E-value=45 Score=24.86 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=41.2
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecceEcCCCCcccccccccCCeEEEE
Q 009480 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.|+|.+++|..+ ++..+.|+.|+-..|....+-.+ -.-..+|+..+ .+|.+++|+++.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~-----L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVP-----IDYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEEC-----TTCBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcC-----CCcccCCCCEEEEE
Confidence 689999999875 56788999999988875443211 11122455433 35778899999887
No 328
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=32.61 E-value=1.4e+02 Score=22.30 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=54.3
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
..+.|++......+-.-.++++.+|+..--++- +|.-+...+|-...-++.|+.|.|.-|=|=|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 567899999888888889999999998876654 6888899999888888999999999887655
No 329
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=31.79 E-value=1.2e+02 Score=22.83 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=47.2
Q ss_pred EEEEEcCCCcHHHHHHHHhhhh-CC--C--CCCeEEEecCcc--ccCCCccccccccccCceeEEE
Q 009480 89 ITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~-gi--p--~~~q~L~~~g~~--L~d~~~L~~y~i~~~s~i~l~~ 147 (533)
.-+.|+..+|+.++-+++.... |. + |.-.++..+|.. |..+.++++-||.+-..|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4567999999999999998763 43 2 235778899988 9999999999999888777654
No 330
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.08 E-value=90 Score=25.01 Aligned_cols=70 Identities=24% Similarity=0.365 Sum_probs=46.7
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCc---cceEEEccEEccCCCCcc-------cccccccccceEE
Q 009480 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD---QQRLIFAGKQLEDGRTLA-------DYNIQKESTLHLV 70 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~---~q~l~~~g~~L~d~~~l~-------~y~i~~~sti~l~ 70 (533)
.|.+++.+|.-+. |.+...|....+-.+.-+|+++..+ .-.| + +.|++++-|. .|-+.......++
T Consensus 32 RVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L-~--Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFv 108 (115)
T 1rax_A 32 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYEL-L--QILSDDRKLKIPENANVFYAMNSTANYDFV 108 (115)
T ss_dssp EEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEE-E--EECSSSCEEEECTTSCHHHHSCTTSCCEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEE-E--EEcCCCCeEecCCCcceEEEEcCCCCccEE
Confidence 4667777886554 8899999999999999999998743 2233 2 4555544322 4555555666676
Q ss_pred EEec
Q 009480 71 LRLR 74 (533)
Q Consensus 71 ~~~~ 74 (533)
++.+
T Consensus 109 LR~r 112 (115)
T 1rax_A 109 LKKR 112 (115)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 6644
No 331
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=30.82 E-value=35 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.3
Q ss_pred ceEEEEeccCccHHHHHHHhccccCCC
Q 009480 315 KTITLEVESSDTIDNVKAKIQDKEGIP 341 (533)
Q Consensus 315 ~~~~~~v~~~~ti~~lK~~I~~~~~ip 341 (533)
..+++.|.++-+..++..+|++|+++.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 367899999999999999999999975
No 332
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=30.63 E-value=21 Score=26.47 Aligned_cols=48 Identities=8% Similarity=0.205 Sum_probs=34.5
Q ss_pred EEeecCCcHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEE
Q 009480 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (533)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~ 299 (533)
+++....||.+|.+.+ +++...-....||+....+ +.+++||.|.++.
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 3455677999987765 3566666677888887654 6788999986653
No 333
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=30.10 E-value=93 Score=24.09 Aligned_cols=60 Identities=12% Similarity=0.256 Sum_probs=38.8
Q ss_pred EEecCCCcHHHHHHHHhhhcC-CCC---------CcE-------EEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 471 LEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~~tV~~LK~~I~~~~g-ip~---------~~q-------~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
++++ ..||.+|...+..... +.. ... .+..+|+...... -.+.-+++|+.|.+.-...||
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 3444 6899999999987741 111 012 5667777663221 123457789999998888887
No 334
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=28.90 E-value=1e+02 Score=22.96 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=33.4
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~ 40 (533)
|-+.-+|++...++|.|..|+.+.-.|.-++.|+.++.
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~ 41 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC 41 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHH
Confidence 34556899999999999999999999999999998865
No 335
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.69 E-value=75 Score=25.36 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.7
Q ss_pred eEEEEecCCcEEEEEecCCCcHHHHHHHhhcc
Q 009480 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 413 (533)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~ 413 (533)
.+.+-+.+|-.+.++++.++|+.++|+.+.++
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 34445678888899999999999999998875
No 336
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=28.14 E-value=51 Score=32.94 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=41.9
Q ss_pred cCCceEEEEeccCccHHHHHHHhc--cccCC---CCCceeEEec------ceEcCCCCcccc
Q 009480 312 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIFA------GKQLEDGRTLAD 362 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~I~--~~~~i---p~~~q~L~~~------g~~L~~~~tl~~ 362 (533)
++|.+.++.+++++||.||-..|+ .+.|+ .++.+.|.+. .+||+++.++.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 788899999999999999999999 67775 4455667652 389999999976
No 337
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=27.84 E-value=50 Score=25.90 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=30.0
Q ss_pred cceeeeeeecc-------cceEEEeecCCchHHHHHHHhhhhcCCC
Q 009480 151 GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 189 (533)
Q Consensus 151 ~~~~i~vk~~~-------g~~~~i~v~~~~tV~~lK~~i~~~~gip 189 (533)
+.+.|+|...+ +..+.+-|.++.+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44556665332 4568999999999999999999998765
No 338
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=27.20 E-value=2.1e+02 Score=23.67 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=52.8
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCcc---ceE---EEccEEcc-CCCCcccccccccccceEEEEe
Q 009480 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQ---QRL---IFAGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~~---q~l---~~~g~~L~-d~~~l~~y~i~~~sti~l~~~~ 73 (533)
.|.++..+|.-+. |.+...|....+-++.-+|+++..+. -.| +=.|++|. .+..=-+|-+.......++++.
T Consensus 29 RVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR~ 108 (140)
T 3kh0_A 29 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKK 108 (140)
T ss_dssp EEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEEE
T ss_pred EEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEee
Confidence 4678888887665 99999999999999999999986653 111 12566642 2233336777777788888886
Q ss_pred cCC
Q 009480 74 RGG 76 (533)
Q Consensus 74 ~~~ 76 (533)
++.
T Consensus 109 k~~ 111 (140)
T 3kh0_A 109 RTF 111 (140)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 339
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=26.94 E-value=2.1e+02 Score=21.93 Aligned_cols=52 Identities=8% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCcHHHHHHHhhhhcC-CCCC---------Ce-------eEEecCccccCCccccccccCCCceEEEEEe
Q 009480 248 SDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 248 ~~tV~~lK~~I~~~~g-ip~~---------~q-------~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
..||.+|.+.+..+++ +... .. ....||+...... -.++.+++||+|.++..
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPP 95 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECC
Confidence 5799999999987752 1110 12 5666777664322 23457899999988753
No 340
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=25.92 E-value=1.2e+02 Score=24.95 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=35.2
Q ss_pred chHHHHHHHhhhhcCCCCCCeEEEe--CCeec-----CC--CCccccccCCCCCEEEEEEE
Q 009480 173 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLVLR 224 (533)
Q Consensus 173 ~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L-----~d--~~tl~~y~I~~~~~i~l~~~ 224 (533)
.|..+|-+.+..+.|.+. ...+.- ..+.| +| +++|++.|+++|+.+.+.-.
T Consensus 20 ~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp CBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred cCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 488888887888888764 333331 22333 22 48999999999999987753
No 341
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=24.96 E-value=1.4e+02 Score=31.14 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC--CcEEEEEc
Q 009480 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA 502 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~--~~q~L~~~ 502 (533)
.++.+.|..++|....+.++++.|+.+|-..|+.+.|+.. +.+-|+..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 3566778888999999999999999999999999999974 56777653
No 342
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=24.67 E-value=76 Score=25.34 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=42.4
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccC--------CCCCceeEEe-c--c--eEc-CCCCcccccccccCCeEE
Q 009480 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--G--KQL-EDGRTLADYNIQKESTLH 372 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~--------ip~~~q~L~~-~--g--~~L-~~~~tl~~y~i~~~~~l~ 372 (533)
+-.-.++|-.+++.++...|+.++|..+.+... -.++.+.... + | .++ ++++-|-+...- -..|.
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLk 100 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLK 100 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEE
Confidence 444568899999999999999999998876422 2455555554 1 1 224 344666665543 23444
Q ss_pred EE
Q 009480 373 LV 374 (533)
Q Consensus 373 l~ 374 (533)
+.
T Consensus 101 lv 102 (108)
T 2v1y_A 101 VI 102 (108)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 343
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=24.27 E-value=56 Score=32.31 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=41.5
Q ss_pred ccCCc----eEEEEeccCccHHHHHHHhccccCCCCC-ceeEEec------ceEcCCCCccccc
Q 009480 311 TLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA------GKQLEDGRTLADY 363 (533)
Q Consensus 311 ~~~g~----~~~~~v~~~~ti~~lK~~I~~~~~ip~~-~q~L~~~------g~~L~~~~tl~~y 363 (533)
.++|. ..++.+++++|++|+...|+++.||... -..|.+. -.||+++.++.+-
T Consensus 14 l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 14 ENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred ecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 35666 9999999999999999999999999433 3346662 2589999888653
No 344
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.11 E-value=1.2e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=33.5
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~ 40 (533)
|-+.-+|++...++|.|..|+.+.=.|.-++.++.++.
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~ 47 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDC 47 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSS
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHH
Confidence 44566899999999999999999999999999998765
No 345
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=23.93 E-value=1.4e+02 Score=26.25 Aligned_cols=98 Identities=13% Similarity=0.250 Sum_probs=0.0
Q ss_pred CeeEEecCccccCCccccccccCCCceEEEEEeecCCceeEE-------------EccCCceEEEEeccCcc--------
Q 009480 268 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV-------------KTLTGKTITLEVESSDT-------- 326 (533)
Q Consensus 268 ~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~v-------------~~~~g~~~~~~v~~~~t-------- 326 (533)
+.++.|+|.+++.--.+..|||+..+.+.+. ++|.+-+ .-.+...+-+-++-.|.
T Consensus 11 ~~~i~YDGsqi~slWA~~~fgi~gdSIV~Fr----G~c~V~~e~mvDleDv~~~~~I~S~dmlhFIvEhFD~~dl~~~y~ 86 (190)
T 2ddz_A 11 ERRIDYDGSAIRSHWAYRNFGILGDSLVVFR----GKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASS 86 (190)
T ss_dssp SSCCCBCSGGGSTTHHHHHHCCCSSEEEEEE----EEEECCGGGCCBHHHHHTTCCCEEEEEEEEEEEECSCCCHHHHHH
T ss_pred CCccCcChhhhhHHHHHHhcCCCCCeEEEEE----CcccccHHHcccHHHHhcCCcccCccceEEEEeeCCCccHHHHHH
Q ss_pred -----HHHHHHHhccccCCCCCcee--EEecceEcCCCCcccccccccCCeEEEEEEecCCeeEEE
Q 009480 327 -----IDNVKAKIQDKEGIPPDQQR--LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV 385 (533)
Q Consensus 327 -----i~~lK~~I~~~~~ip~~~q~--L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~v 385 (533)
|.-+|+.+.+. |+...+.. |+++|+.| ++.+.-++..++.|++
T Consensus 87 rQRLlv~i~kE~L~~~-g~~~~R~GDDLy~~~~KL---------------SVSIAt~s~vS~kIH~ 136 (190)
T 2ddz_A 87 LQKLLIARLVELLWNY-GIEASRRGDDIYVNGRKL---------------SISIATVSPVSIKIHI 136 (190)
T ss_dssp HHHHHHHHHHHHHHTT-TCCEEEETTEEEETTEEC---------------EEEEEEECSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHc-CCeeeeccCeeeECCCEE---------------EEEEEecCcchheEEE
No 346
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=23.70 E-value=93 Score=24.33 Aligned_cols=58 Identities=12% Similarity=0.292 Sum_probs=40.1
Q ss_pred eEEEEeecCCcHHHHHHHhhhhcCCCCC-----------CeeEEecC-ccccC------CccccccccCCCceEEE
Q 009480 240 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHL 297 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gip~~-----------~q~L~~~g-~~L~d------~~tl~~~~i~~~~ti~l 297 (533)
...++++++.|.+++...+.++-.+... ...|...+ ..|++ +++|.+.|+.+|+.|++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence 5568889999999999999985432222 23333332 23333 67899999999999876
No 347
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=23.48 E-value=63 Score=25.02 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=36.7
Q ss_pred EEe-ccCccHHHHHHHhccccCCCCCceeEEec-ceEcCCCCcccccccccCCeEEEEEE
Q 009480 319 LEV-ESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 319 ~~v-~~~~ti~~lK~~I~~~~~ip~~~q~L~~~-g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.+ ..+.||+|+..+|....+-.. .+-++++ ...-+..+.-.+|.++++|.+.+..+
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 444 679999999999997655332 1333321 11223445557888899999888754
No 348
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=23.46 E-value=1.2e+02 Score=26.25 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=41.6
Q ss_pred EEEecCCCcHHHHHHHHhhhcC-C---------CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009480 470 TLEVESSDTIDNVKAKIQDKEG-I---------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~g-i---------p~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl~GG 532 (533)
.++++. .||.+|...+...+. + ......+..||+...... -.+.-+++|+.|.+.-...||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECccccc
Confidence 445555 899999999987641 1 012345677888776532 123457889999998888887
No 349
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=86 Score=24.16 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=34.8
Q ss_pred ccHHHHHHHhccccCCCCCceeEEe--cceEcCCCCcccccccccCCeEEEEEEec
Q 009480 325 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 325 ~ti~~lK~~I~~~~~ip~~~q~L~~--~g~~L~~~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
.+.+||+.|.+++++++...-+|+. .|.+++++.-+.-. +..|+.+.....
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEETT
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcCC
Confidence 4789999999999999766666665 47776665443333 456666665543
No 350
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.08 E-value=1.1e+02 Score=32.94 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.4
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCC-CceeEEe
Q 009480 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 349 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~I~~~~~ip~-~~q~L~~ 349 (533)
+.+-|..++|...++.+++++|++++-..++.+.|+.. +-..|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 34557789999999999999999999999999999854 4445666
No 351
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=22.92 E-value=1.5e+02 Score=28.00 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=40.4
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHhhhhCCCCCCeEEEec-------CccccCCCcccc
Q 009480 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 134 (533)
Q Consensus 77 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-------g~~L~d~~~L~~ 134 (533)
+-|.|-..+|...+|.|++++|++++-..+..+.+.+...-..+|. -+.|+|+..+.+
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 3455556788999999999999999999888887765444333332 255666655544
No 352
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=22.66 E-value=1.4e+02 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=33.5
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~ 40 (533)
|-+.-+|++..+++|.|..|+.+.=.|.-++.|+.++.
T Consensus 20 irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~ 57 (95)
T 2l05_A 20 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPEC 57 (95)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGG
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHH
Confidence 44556899999999999999999999999999998865
No 353
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=22.10 E-value=2.1e+02 Score=22.22 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=44.7
Q ss_pred CeeeEEEe-CCC--CEEEEEecCCCcHHHHHHHHhhh---cCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009480 456 GMQIFVKT-LTG--KTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 456 ~m~i~v~~-~~g--~~~~~~v~~~~tV~~LK~~I~~~---~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~tl~l~~rl 529 (533)
.|.|.|-+ ..+ ....+++....||+++-....-. ..|......+-.+|+....+ .-+++|+.|.+.-.+
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d-----~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT-----DVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT-----CBCCTTCEEEECCCC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC-----ccCCCCCEEEEEecc
Confidence 34555543 222 34566888999999998887642 24555566777788877744 345669988875443
No 354
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.07 E-value=1.6e+02 Score=27.36 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.4
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEE
Q 009480 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~ 45 (533)
|-|...+|.+.+++|+++.|+.+|-+.+.++.+++.+...-++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3455678999999999999999999999999998776654444
No 355
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=20.77 E-value=1.5e+02 Score=24.09 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=39.9
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEE-EEEcCeecCCCCccccc---CCCCCCEEEEEE
Q 009480 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADY---NIQKESTLHLVL 527 (533)
Q Consensus 470 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~-L~~~g~~L~d~~tL~~~---~I~~~~tl~l~~ 527 (533)
.+-|+.+.||+++...|..+..+++++-. |+-++.....+.++++. .-.++.-|+|..
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 45789999999999999999999988744 44577644455565543 222344566554
No 356
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=20.44 E-value=1.2e+02 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=32.4
Q ss_pred cCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEc
Q 009480 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (533)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~ 46 (533)
..+|++.+|+|.++.|+.+|=..+..+.+.+...-..+|.
T Consensus 38 ~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E 77 (281)
T 4gmv_A 38 MSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVE 77 (281)
T ss_dssp ETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEE
T ss_pred ecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 4568999999999999999999888888876555555553
Done!