BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009482
         (533 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6LD62|RNY_PARD8 Ribonuclease Y OS=Parabacteroides distasonis (strain ATCC 8503 /
           DSM 20701 / NCTC 11152) GN=rny PE=3 SV=1
          Length = 512

 Score = 35.8 bits (81), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 72/130 (55%), Gaps = 5/130 (3%)

Query: 342 RAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEER 401
           R +L +  +  +++  +E E++ K K +   E  K L L  D EK++++ ++ I++VE +
Sbjct: 25  RFLLKSKYDSVLQEAEKEAEVIKKNKMLEVKE--KFLHLKADLEKQVSQRNAKIQSVETK 82

Query: 402 ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKEL 461
           +        + Q  +  + + ++++   L+ + E +  KK+++DK    EV+    L+ +
Sbjct: 83  LKQRELTMNQRQEELQRRNNEVEAVKENLSSQLELVEKKKQDLDKLHQKEVEH---LEAI 139

Query: 462 ARVSADEAKE 471
           + +SA+EAKE
Sbjct: 140 SGLSAEEAKE 149


>sp|Q64Q86|RNY_BACFR Ribonuclease Y OS=Bacteroides fragilis (strain YCH46) GN=rny PE=3
           SV=1
          Length = 511

 Score = 33.9 bits (76), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 13/111 (11%)

Query: 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS---IVVSDFQEYQSSINAKYDS 422
           KK+ L    +K L    D EKE+A  +  I+  E ++    +V+S  QE      A+ D+
Sbjct: 46  KKNKLLEVKEKFLNKKADLEKEVALRNQKIQQAENKLKQREMVLSQRQEEIQRKRAEADA 105

Query: 423 LQSIISQLNLESE--AMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471
           ++      NLE++   +  KK+E+DK  + E++   KL+ L+ +SADEAKE
Sbjct: 106 VRE-----NLEAQLGIVDKKKEELDKLQHQEIE---KLEALSGLSADEAKE 148


>sp|Q5L9Y0|RNY_BACFN Ribonuclease Y OS=Bacteroides fragilis (strain ATCC 25285 / NCTC
           9343) GN=rny PE=3 SV=1
          Length = 511

 Score = 33.9 bits (76), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 13/111 (11%)

Query: 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS---IVVSDFQEYQSSINAKYDS 422
           KK+ L    +K L    D EKE+A  +  I+  E ++    +V+S  QE      A+ D+
Sbjct: 46  KKNKLLEVKEKFLNKKADLEKEVALRNQKIQQAENKLKQREMVLSQRQEEIQRKRAEADA 105

Query: 423 LQSIISQLNLESE--AMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471
           ++      NLE++   +  KK+E+DK  + E++   KL+ L+ +SADEAKE
Sbjct: 106 VRE-----NLEAQLGIVDKKKEELDKLQHQEIE---KLEALSGLSADEAKE 148


>sp|Q89ZG0|RNY_BACTN Ribonuclease Y OS=Bacteroides thetaiotaomicron (strain ATCC 29148 /
           DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=rny PE=3 SV=1
          Length = 511

 Score = 32.7 bits (73), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 17/181 (9%)

Query: 342 RAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEER 401
           R VL +  +  ++D   E E++ K K +   E  K L    D EKE+A  +  I+  E +
Sbjct: 24  RYVLKSKYDSVLKDAETEAEVIKKNKLLEVKE--KFLNKKADLEKEVALRNQKIQQAENK 81

Query: 402 IS---IVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSM--KKKEIDKFLNDEVDRGT 456
           +    +V+S  QE       +   L++   + NLE++ + +  KK+E+DK  + E++   
Sbjct: 82  LKQREMVLSQRQE-----EIQRKKLEAEAVKENLEAQLVIVDKKKEELDKLQHQEIE--- 133

Query: 457 KLKELARVSADEAKEYW--EVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEA 514
           KL+ ++ +SADEAKE     + E  ++   S +    D  KL  ++E     +Q++Q+ A
Sbjct: 134 KLEAISGLSADEAKERLVESLKEEAKTQAQSFINDIMDDAKLTASKEAKRIVIQSIQRVA 193

Query: 515 S 515
           +
Sbjct: 194 T 194


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.123    0.320 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,297,253
Number of Sequences: 539616
Number of extensions: 6912010
Number of successful extensions: 41376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 1815
Number of HSP's that attempted gapping in prelim test: 38330
Number of HSP's gapped (non-prelim): 4044
length of query: 533
length of database: 191,569,459
effective HSP length: 122
effective length of query: 411
effective length of database: 125,736,307
effective search space: 51677622177
effective search space used: 51677622177
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)