Query 009482
Match_columns 533
No_of_seqs 18 out of 20
Neff 2.5
Searched_HMMs 46136
Date Thu Mar 28 13:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 97.3 0.41 9E-06 52.9 37.6 204 232-452 243-446 (880)
2 TIGR00606 rad50 rad50. This fa 97.2 0.77 1.7E-05 54.1 35.6 86 366-451 882-967 (1311)
3 TIGR00606 rad50 rad50. This fa 96.2 3.8 8.3E-05 48.5 36.2 152 363-520 770-924 (1311)
4 TIGR02169 SMC_prok_A chromosom 95.8 4.1 8.9E-05 45.5 39.0 17 179-195 177-193 (1164)
5 PF02151 UVR: UvrB/uvrC motif; 95.1 0.039 8.5E-07 40.0 4.2 33 216-248 4-36 (36)
6 COG1196 Smc Chromosome segrega 94.5 13 0.00028 43.8 29.6 53 214-271 674-726 (1163)
7 COG1196 Smc Chromosome segrega 94.4 13 0.00029 43.6 36.2 208 193-414 172-390 (1163)
8 TIGR02169 SMC_prok_A chromosom 94.4 11 0.00023 42.4 37.3 7 216-222 718-724 (1164)
9 PRK02224 chromosome segregatio 94.2 12 0.00025 41.9 39.5 35 236-270 380-414 (880)
10 PRK11637 AmiB activator; Provi 94.0 6 0.00013 41.2 18.6 21 468-488 168-188 (428)
11 PF00261 Tropomyosin: Tropomyo 93.7 7.2 0.00016 37.8 20.4 223 176-422 5-233 (237)
12 KOG0161 Myosin class II heavy 92.8 35 0.00076 43.2 38.0 342 165-527 1298-1661(1930)
13 PRK04778 septation ring format 91.4 25 0.00054 38.4 32.0 263 166-449 117-407 (569)
14 PRK11637 AmiB activator; Provi 91.3 21 0.00044 37.3 18.8 42 369-410 93-134 (428)
15 PF07888 CALCOCO1: Calcium bin 89.8 39 0.00084 38.0 28.5 58 236-293 160-217 (546)
16 PF04949 Transcrip_act: Transc 89.1 7.6 0.00017 37.4 11.9 123 302-442 21-150 (159)
17 KOG1924 RhoA GTPase effector D 88.1 1.5 3.2E-05 50.9 7.6 53 402-464 930-988 (1102)
18 TIGR03185 DNA_S_dndD DNA sulfu 85.8 62 0.0013 35.8 29.8 14 212-225 207-220 (650)
19 PHA02562 46 endonuclease subun 85.2 54 0.0012 34.5 22.6 23 500-522 374-396 (562)
20 PRK08475 F0F1 ATP synthase sub 83.3 21 0.00046 33.2 11.5 94 233-341 53-146 (167)
21 TIGR03321 alt_F1F0_F0_B altern 83.0 49 0.0011 32.4 15.5 106 233-353 36-141 (246)
22 COG1579 Zn-ribbon protein, pos 81.7 41 0.00089 34.1 13.5 60 348-408 28-87 (239)
23 smart00787 Spc7 Spc7 kinetocho 81.5 47 0.001 34.4 14.2 159 306-481 126-285 (312)
24 KOG1924 RhoA GTPase effector D 80.8 3.2 6.9E-05 48.3 6.1 12 11-22 510-521 (1102)
25 KOG0161 Myosin class II heavy 80.1 1.9E+02 0.0041 37.2 37.7 305 166-523 1204-1537(1930)
26 PF07888 CALCOCO1: Calcium bin 79.7 1.1E+02 0.0025 34.5 27.2 61 211-290 133-193 (546)
27 PHA02562 46 endonuclease subun 77.6 1E+02 0.0022 32.6 23.9 34 241-274 214-247 (562)
28 PF13514 AAA_27: AAA domain 76.6 1.7E+02 0.0036 34.7 34.9 116 229-351 525-647 (1111)
29 PRK12704 phosphodiesterase; Pr 75.8 99 0.0021 34.1 15.3 59 410-471 99-157 (520)
30 PF12072 DUF3552: Domain of un 75.0 81 0.0017 30.2 13.8 93 376-471 61-153 (201)
31 PF00261 Tropomyosin: Tropomyo 74.8 87 0.0019 30.5 15.6 155 361-519 25-190 (237)
32 COG0419 SbcC ATPase involved i 74.8 1.7E+02 0.0036 33.8 38.3 42 367-408 554-601 (908)
33 KOG0994 Extracellular matrix g 74.0 2.4E+02 0.0052 35.3 22.0 48 234-281 1564-1611(1758)
34 PF09726 Macoilin: Transmembra 73.7 1.8E+02 0.0038 33.6 20.8 72 310-399 585-656 (697)
35 COG3264 Small-conductance mech 73.1 21 0.00044 41.8 9.7 84 426-531 137-220 (835)
36 KOG0996 Structural maintenance 72.1 2.5E+02 0.0055 34.7 31.8 140 345-526 459-598 (1293)
37 PF05701 WEMBL: Weak chloropla 71.5 1.6E+02 0.0035 32.2 32.9 113 214-331 27-146 (522)
38 PRK13461 F0F1 ATP synthase sub 70.7 84 0.0018 28.6 13.4 106 234-354 37-142 (159)
39 cd07666 BAR_SNX7 The Bin/Amphi 69.4 1.3E+02 0.0029 30.4 19.3 43 440-485 200-243 (243)
40 PRK05759 F0F1 ATP synthase sub 69.0 86 0.0019 28.0 14.0 109 244-353 32-140 (156)
41 KOG0612 Rho-associated, coiled 68.9 1.7E+02 0.0038 36.1 16.1 132 353-491 517-665 (1317)
42 PRK14471 F0F1 ATP synthase sub 68.1 97 0.0021 28.3 13.3 106 233-353 39-144 (164)
43 PRK14472 F0F1 ATP synthase sub 67.8 1E+02 0.0023 28.5 13.7 105 234-353 50-154 (175)
44 PRK00106 hypothetical protein; 67.5 2E+02 0.0043 32.4 15.4 54 415-471 119-172 (535)
45 PF05701 WEMBL: Weak chloropla 66.8 2E+02 0.0044 31.5 34.2 194 200-407 55-263 (522)
46 PRK04778 septation ring format 65.1 2.2E+02 0.0048 31.3 25.9 292 214-524 79-423 (569)
47 PF07200 Mod_r: Modifier of ru 65.1 48 0.001 29.7 8.5 23 416-438 94-116 (150)
48 CHL00019 atpF ATP synthase CF0 64.0 1.3E+02 0.0028 28.2 14.1 106 233-353 55-160 (184)
49 PF08317 Spc7: Spc7 kinetochor 63.8 1.8E+02 0.0039 29.8 14.9 130 306-449 131-261 (325)
50 PRK14474 F0F1 ATP synthase sub 63.1 1.7E+02 0.0036 29.3 13.9 106 233-353 36-141 (250)
51 TIGR03185 DNA_S_dndD DNA sulfu 62.0 2.6E+02 0.0057 31.1 29.3 88 196-283 219-314 (650)
52 PRK13428 F0F1 ATP synthase sub 61.8 2E+02 0.0043 31.0 13.7 106 234-354 33-138 (445)
53 cd07667 BAR_SNX30 The Bin/Amph 61.2 1.9E+02 0.0042 29.4 20.1 174 233-483 58-238 (240)
54 cd07632 BAR_APPL2 The Bin/Amph 59.7 1.1E+02 0.0023 31.1 10.6 108 336-450 83-209 (215)
55 TIGR03319 YmdA_YtgF conserved 59.7 2.8E+02 0.0061 30.7 15.3 55 417-471 93-151 (514)
56 PF11932 DUF3450: Protein of u 58.7 1E+02 0.0022 30.1 10.2 65 362-426 53-117 (251)
57 PF00435 Spectrin: Spectrin re 58.6 63 0.0014 25.0 7.2 61 372-432 34-94 (105)
58 PF04156 IncA: IncA protein; 58.0 1.5E+02 0.0033 27.3 10.7 28 435-462 123-150 (191)
59 KOG0933 Structural maintenance 57.7 4.5E+02 0.0097 32.4 26.4 174 233-436 741-924 (1174)
60 PRK06568 F0F1 ATP synthase sub 57.7 87 0.0019 29.7 9.2 40 233-272 35-74 (154)
61 PRK12705 hypothetical protein; 56.7 84 0.0018 34.9 10.2 87 375-471 59-145 (508)
62 PF05667 DUF812: Protein of un 56.4 3.5E+02 0.0075 30.8 19.7 253 266-526 249-533 (594)
63 PRK13453 F0F1 ATP synthase sub 56.1 1.7E+02 0.0038 27.2 13.7 107 233-354 49-155 (173)
64 PRK07352 F0F1 ATP synthase sub 55.5 1.8E+02 0.0038 27.1 13.6 106 233-353 50-155 (174)
65 PRK13460 F0F1 ATP synthase sub 50.7 2.1E+02 0.0046 26.6 13.7 106 233-353 47-152 (173)
66 PF05266 DUF724: Protein of un 49.8 2.5E+02 0.0055 27.4 11.1 32 297-328 54-85 (190)
67 COG1579 Zn-ribbon protein, pos 49.2 3.1E+02 0.0067 28.0 13.1 117 312-443 45-167 (239)
68 PF10146 zf-C4H2: Zinc finger- 48.4 1.8E+02 0.004 29.2 10.2 42 348-389 29-70 (230)
69 KOG0979 Structural maintenance 48.1 4.2E+02 0.009 32.5 14.3 73 366-445 277-349 (1072)
70 PRK00558 uvrC excinuclease ABC 43.4 27 0.0006 38.8 4.1 35 217-251 205-239 (598)
71 PF04111 APG6: Autophagy prote 43.2 1.6E+02 0.0035 30.3 9.3 16 310-325 21-36 (314)
72 KOG4825 Component of synaptic 41.8 72 0.0016 36.0 6.8 95 175-271 170-266 (666)
73 PF05278 PEARLI-4: Arabidopsis 41.8 3.6E+02 0.0078 28.2 11.4 46 357-402 192-237 (269)
74 PF10186 Atg14: UV radiation r 41.7 3.2E+02 0.007 26.1 13.1 28 384-411 61-88 (302)
75 PF09457 RBD-FIP: FIP domain ; 40.5 55 0.0012 26.0 4.3 41 375-415 3-43 (48)
76 PF15070 GOLGA2L5: Putative go 39.7 6.3E+02 0.014 28.9 18.8 58 357-414 93-150 (617)
77 PF06008 Laminin_I: Laminin Do 39.3 3.9E+02 0.0084 26.3 16.5 148 368-523 48-203 (264)
78 PF12128 DUF3584: Protein of u 39.1 7.8E+02 0.017 29.8 32.3 20 495-514 910-929 (1201)
79 KOG0250 DNA repair protein RAD 39.0 8.4E+02 0.018 30.1 23.1 82 211-304 156-239 (1074)
80 KOG0243 Kinesin-like protein [ 38.5 3.3E+02 0.0072 33.2 11.8 141 358-509 424-574 (1041)
81 PF05010 TACC: Transforming ac 37.4 4.3E+02 0.0094 26.3 18.0 92 310-412 21-112 (207)
82 COG0419 SbcC ATPase involved i 36.8 7.4E+02 0.016 28.8 38.5 21 180-200 233-253 (908)
83 PRK09039 hypothetical protein; 36.7 5.2E+02 0.011 27.1 13.1 105 164-269 49-173 (343)
84 TIGR01000 bacteriocin_acc bact 36.5 4.2E+02 0.0091 28.1 11.2 24 501-524 239-262 (457)
85 PRK14473 F0F1 ATP synthase sub 36.4 3.4E+02 0.0073 24.8 13.7 108 233-355 39-146 (164)
86 KOG0933 Structural maintenance 35.8 9.5E+02 0.021 29.9 21.0 194 327-521 288-502 (1174)
87 cd07624 BAR_SNX7_30 The Bin/Am 35.6 4E+02 0.0087 25.5 19.7 72 234-309 22-93 (200)
88 KOG0018 Structural maintenance 35.1 9.7E+02 0.021 29.8 21.4 225 292-524 193-463 (1141)
89 PRK13455 F0F1 ATP synthase sub 35.0 3.8E+02 0.0083 25.1 12.7 18 204-221 62-79 (184)
90 PF04156 IncA: IncA protein; 34.6 3.7E+02 0.0081 24.8 12.6 55 419-473 82-136 (191)
91 PRK12306 uvrC excinuclease ABC 34.6 46 0.00099 36.8 4.1 32 216-247 194-225 (519)
92 PF10186 Atg14: UV radiation r 33.9 4.3E+02 0.0093 25.3 12.2 22 333-354 27-48 (302)
93 KOG1103 Predicted coiled-coil 33.0 7.3E+02 0.016 27.7 16.6 168 204-390 104-291 (561)
94 PRK07883 hypothetical protein; 32.9 51 0.0011 36.4 4.1 35 216-250 408-442 (557)
95 TIGR02231 conserved hypothetic 31.8 2.5E+02 0.0054 30.3 8.9 95 313-407 79-173 (525)
96 TIGR01843 type_I_hlyD type I s 31.7 5.4E+02 0.012 25.8 18.5 20 504-523 245-264 (423)
97 PF10158 LOH1CR12: Tumour supp 31.1 1.1E+02 0.0024 28.4 5.3 55 392-450 55-109 (131)
98 KOG0239 Kinesin (KAR3 subfamil 31.1 5.6E+02 0.012 29.6 11.8 27 408-434 231-257 (670)
99 PF03194 LUC7: LUC7 N_terminus 30.9 3.5E+02 0.0076 27.3 9.2 87 170-258 88-174 (254)
100 PF05557 MAD: Mitotic checkpoi 30.6 17 0.00036 40.6 0.0 34 192-225 113-146 (722)
101 PF00038 Filament: Intermediat 30.5 5.4E+02 0.012 25.4 24.4 39 398-436 249-287 (312)
102 PRK14668 uvrC excinuclease ABC 30.0 60 0.0013 36.3 4.1 32 217-248 202-233 (577)
103 PRK14666 uvrC excinuclease ABC 29.8 59 0.0013 37.5 4.1 36 216-251 203-238 (694)
104 PF07798 DUF1640: Protein of u 29.1 4.9E+02 0.011 24.5 12.3 24 327-350 45-68 (177)
105 smart00150 SPEC Spectrin repea 28.8 2.7E+02 0.0059 21.4 6.7 11 312-322 8-18 (101)
106 PRK10884 SH3 domain-containing 28.5 5.4E+02 0.012 25.4 9.8 14 305-318 161-174 (206)
107 PRK14671 uvrC excinuclease ABC 28.3 66 0.0014 36.3 4.0 31 217-247 218-248 (621)
108 PRK08476 F0F1 ATP synthase sub 28.0 4.4E+02 0.0096 24.0 8.6 18 234-251 39-56 (141)
109 KOG2391 Vacuolar sorting prote 27.4 2.8E+02 0.0061 30.2 8.2 79 345-432 207-285 (365)
110 PF04778 LMP: LMP repeated reg 27.2 2.9E+02 0.0064 27.0 7.6 52 410-462 43-98 (157)
111 TIGR00194 uvrC excinuclease AB 27.2 71 0.0015 35.7 4.0 33 217-249 197-229 (574)
112 PRK14670 uvrC excinuclease ABC 27.1 72 0.0016 35.8 4.0 33 217-249 180-212 (574)
113 PRK14667 uvrC excinuclease ABC 26.8 73 0.0016 35.7 4.0 33 216-248 201-233 (567)
114 PRK10698 phage shock protein P 26.8 6.3E+02 0.014 24.9 13.8 24 362-385 3-26 (222)
115 PRK05298 excinuclease ABC subu 26.2 76 0.0016 35.5 4.0 36 214-249 613-648 (652)
116 PRK06231 F0F1 ATP synthase sub 26.1 6.2E+02 0.013 24.6 13.7 106 233-353 79-184 (205)
117 PF06160 EzrA: Septation ring 26.0 9.4E+02 0.02 26.7 29.9 326 177-525 42-420 (560)
118 PRK09174 F0F1 ATP synthase sub 26.0 5.2E+02 0.011 25.3 9.2 73 233-308 84-156 (204)
119 PRK14064 exodeoxyribonuclease 25.6 1.1E+02 0.0024 26.0 4.0 35 374-408 29-63 (75)
120 smart00787 Spc7 Spc7 kinetocho 25.4 8E+02 0.017 25.7 16.3 63 322-388 126-188 (312)
121 PF07889 DUF1664: Protein of u 25.4 4.4E+02 0.0094 24.6 8.1 70 336-405 39-108 (126)
122 TIGR02977 phageshock_pspA phag 24.8 6.4E+02 0.014 24.4 16.9 97 170-273 29-132 (219)
123 PF05266 DUF724: Protein of un 24.4 3E+02 0.0064 26.9 7.2 25 386-410 159-183 (190)
124 KOG0964 Structural maintenance 24.4 1.5E+03 0.032 28.4 25.0 200 179-404 237-457 (1200)
125 PRK14672 uvrC excinuclease ABC 24.2 86 0.0019 36.2 4.1 36 217-252 208-245 (691)
126 PF10168 Nup88: Nuclear pore c 23.9 6.3E+02 0.014 29.3 10.7 63 357-423 557-619 (717)
127 KOG4674 Uncharacterized conser 23.5 1.8E+03 0.039 29.1 38.3 165 359-523 838-1029(1822)
128 KOG0250 DNA repair protein RAD 22.9 1.5E+03 0.033 28.1 19.2 147 374-523 736-889 (1074)
129 PF15619 Lebercilin: Ciliary p 22.9 7.2E+02 0.016 24.3 12.4 73 375-447 121-193 (194)
130 PF00015 MCPsignal: Methyl-acc 22.6 5.7E+02 0.012 23.0 12.5 113 343-478 59-171 (213)
131 TIGR00631 uvrb excinuclease AB 22.2 78 0.0017 35.7 3.2 30 216-245 625-654 (655)
132 PF04111 APG6: Autophagy prote 22.1 6.1E+02 0.013 26.3 9.3 36 368-403 53-88 (314)
133 PF06160 EzrA: Septation ring 21.8 1.1E+03 0.024 26.1 32.7 75 170-244 117-201 (560)
134 TIGR02680 conserved hypothetic 21.6 1.6E+03 0.035 27.9 26.6 161 313-483 291-469 (1353)
135 PRK09039 hypothetical protein; 21.6 9.5E+02 0.021 25.2 14.2 75 370-444 121-199 (343)
136 PF13514 AAA_27: AAA domain 21.1 1.5E+03 0.032 27.2 35.3 39 373-411 737-775 (1111)
137 PRK14067 exodeoxyribonuclease 20.7 1.5E+02 0.0032 25.6 3.9 34 374-407 30-63 (80)
138 PRK00977 exodeoxyribonuclease 20.7 1.5E+02 0.0033 25.2 4.0 35 374-408 33-67 (80)
139 KOG0976 Rho/Rac1-interacting s 20.7 1.6E+03 0.036 27.6 16.8 91 388-490 388-479 (1265)
140 PRK14669 uvrC excinuclease ABC 20.3 1.2E+02 0.0025 34.6 4.0 32 217-248 206-237 (624)
141 TIGR01000 bacteriocin_acc bact 20.2 1.1E+03 0.023 25.2 17.1 22 502-523 288-309 (457)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=97.31 E-value=0.41 Score=52.89 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=112.3
Q ss_pred hHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcH
Q 009482 232 FEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSS 311 (533)
Q Consensus 232 Fe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ss 311 (533)
+...+..-+.+..++++...+-.-+..++..+..+..++...-...-..+.+...|......-+. ......++-..+.
T Consensus 243 ~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~-~~~~l~~~~~~l~- 320 (880)
T PRK02224 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA-DAEAVEARREELE- 320 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHH-
Confidence 33444444566666777777777777777777777777766555444444443333332222111 1111112222221
Q ss_pred HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 009482 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEN 391 (533)
Q Consensus 312 kEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeN 391 (533)
+.++.+..-...+..+=.++.-+. ..+...+..=.++..-+..+-..+++++..+-..+...+.+|...
T Consensus 321 ~k~~el~~~l~~~~~~l~~~~~~~-----------e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l 389 (880)
T PRK02224 321 DRDEELRDRLEECRVAAQAHNEEA-----------ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221111100100000 111112222222223344556677888888888888888888888
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhh
Q 009482 392 DSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEV 452 (533)
Q Consensus 392 ds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee 452 (533)
...+..+..+|..+...|. .++.+|..++..+.++...-..+....+...++|...+
T Consensus 390 ~~el~el~~~l~~~~~~~~----~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 390 EEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHhcchhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877665443 44677788888888888777777777777777777666
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.77 Score=54.05 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHh
Q 009482 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEID 445 (533)
Q Consensus 366 kkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID 445 (533)
++.-|..+|.+|-..+..-..+|.+.+..|..+..+|...-+.|.......+.++..+|..+.++......|...-++|+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777666666667777777777778888888888888888888899999999999999999999999999999
Q ss_pred Hhhhhh
Q 009482 446 KFLNDE 451 (533)
Q Consensus 446 ~fls~e 451 (533)
.|+..-
T Consensus 962 ~y~~~~ 967 (1311)
T TIGR00606 962 NKIQDG 967 (1311)
T ss_pred HHHHcC
Confidence 999864
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.23 E-value=3.8 Score=48.47 Aligned_cols=152 Identities=9% Similarity=0.057 Sum_probs=79.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHH
Q 009482 363 LYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK 442 (533)
Q Consensus 363 l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkk 442 (533)
+..+-.-+..+++.+-. +......|......|..++.+|....+.+....+ +.-++.|++.+..+..+.+++ ++
T Consensus 770 ~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l---~~ 843 (1311)
T TIGR00606 770 QETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTV---VS 843 (1311)
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHH---HH
Confidence 33333444445544433 3445566677777888888888888777776666 234455555555555544444 34
Q ss_pred HHhHhhhhhhhcccchHHH---HHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009482 443 EIDKFLNDEVDRGTKLKEL---ARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARA 519 (533)
Q Consensus 443 eID~fls~ee~~gakLRe~---a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~ 519 (533)
+|+......+..-..+.++ ++-..++--...+.+..|..|-..|-.-.+.-..+...-.++-.++.-|.+++..+..
T Consensus 844 ~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~ 923 (1311)
T TIGR00606 844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ 923 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4444444444444444444 4444444444444555666665555554444444444344444444444444444333
Q ss_pred h
Q 009482 520 S 520 (533)
Q Consensus 520 S 520 (533)
.
T Consensus 924 ~ 924 (1311)
T TIGR00606 924 E 924 (1311)
T ss_pred H
Confidence 3
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.85 E-value=4.1 Score=45.54 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009482 179 DKLNRARELAASVSAAR 195 (533)
Q Consensus 179 ~KL~~~~q~AasvsaaR 195 (533)
.+|..++.....+...+
T Consensus 177 ~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 177 EELEEVEENIERLDLII 193 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 5
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=95.07 E-value=0.039 Score=39.99 Aligned_cols=33 Identities=39% Similarity=0.626 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
..+|+.+++.|++.+|||.|-+|-|.+..++++
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 568999999999999999999999999998763
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.55 E-value=13 Score=43.81 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHH
Q 009482 214 LRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMY 271 (533)
Q Consensus 214 ~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq 271 (533)
.....++.+++.++. ....+...+..++.....+-..++.+...++.+..++.
T Consensus 674 ~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 674 EELAELEAQLEKLEE-----ELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555442 23455566666666677777777777777777666655
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.44 E-value=13 Score=43.61 Aligned_cols=208 Identities=22% Similarity=0.239 Sum_probs=100.1
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHh-hhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHH
Q 009482 193 AARKDSIRRRRKAADDVELASLRHSQLEKQLDEA-CEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMY 271 (533)
Q Consensus 193 aaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeA-CEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq 271 (533)
..|+.+-++-+++.+|+......-.+|+++|+-. -+++.+++...++..+-.++.. .++. .|..+..++.
T Consensus 172 ~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~--~~~~-------~~~~~~~~l~ 242 (1163)
T COG1196 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA--LLLA-------KLKELRKELE 242 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHH
Confidence 3566677777888999999999999999998865 3566666666666655544332 2222 2333334444
Q ss_pred HHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHH-HHHHHhhHhhhhhh--hhhHHHHHhHHHHHHhhhhhh
Q 009482 272 DVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE-MEKWLASTEALEGR--KIELEIESHLVNEARAVLNNS 348 (533)
Q Consensus 272 ~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskE-me~W~ss~E~LE~k--K~EleiEs~~v~eAr~~Ln~s 348 (533)
.+-+---..+++...+...+..-.. .+...-..+.... --.|. ..+.+..+ .-+++.+...+.+-+..+.+-
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 317 (1163)
T COG1196 243 ELEEELSRLEEELEELQEELEEAEK----EIEELKSELEELREELEEL-QEELLELKEEIEELEGEISLLRERLEELENE 317 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443334455555555555543322 2222222222111 11222 44444443 223444444455555544444
Q ss_pred hhhhhhhh-hHHHHHHhhhhhh-----HHHHHHHHHHHHHhhhhhhhhhcc-hHHHHHHHHHHHhhhhhhhhh
Q 009482 349 IEHSVEDD-LREKEILYKKKDI-----LTNELQKLLALVRDKEKEIAENDS-NIRAVEERISIVVSDFQEYQS 414 (533)
Q Consensus 349 Ieh~vEdD-krEKe~l~kkkd~-----L~~EL~~LL~lVk~KE~EIAeNds-~IkaV~erIs~VVS~F~e~Qs 414 (533)
++..-+.+ ..+..+-..+..+ +..|++..+..+...-.+...... ..++++.++....+.+.....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1163)
T COG1196 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33322222 2222222222222 234555555555444444443333 444555555555555544433
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.40 E-value=11 Score=42.36 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 009482 216 HSQLEKQ 222 (533)
Q Consensus 216 hk~LE~e 222 (533)
+..++.+
T Consensus 718 ~~~l~~~ 724 (1164)
T TIGR02169 718 IGEIEKE 724 (1164)
T ss_pred HHHHHHH
Confidence 3333333
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=94.17 E-value=12 Score=41.87 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhH
Q 009482 236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKM 270 (533)
Q Consensus 236 ErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~km 270 (533)
+.+...+..++++...+-..|.++....+.++..+
T Consensus 380 ~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l 414 (880)
T PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL 414 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence 33445566666666666555554444444444443
No 10
>PRK11637 AmiB activator; Provisional
Probab=94.00 E-value=6 Score=41.15 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 009482 468 EAKEYWEVVELRRSLMSSILK 488 (533)
Q Consensus 468 EAk~~qe~V~lRR~LassIlK 488 (533)
....+.+.-..|+.|....-.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~ 188 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAE 188 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.70 E-value=7.2 Score=37.84 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHH
Q 009482 176 VISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIA 255 (533)
Q Consensus 176 qIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~a 255 (533)
+|-..|+.+++.+..+-..-+..-.++-++=.++.+..-+-..||.+|+.+=+ +...+..-|..+++..+-.-.+
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee-----rL~~~~~kL~~~e~~~de~er~ 79 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE-----RLEEATEKLEEAEKRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-----CCCHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777788777777777766654422 1223334455555554444444
Q ss_pred HHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH------HHHHHHhhHhhhhhhhh
Q 009482 256 LRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE------EMEKWLASTEALEGRKI 329 (533)
Q Consensus 256 LRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk------Eme~W~ss~E~LE~kK~ 329 (533)
++ +|+++...-++....|+.=-+.|...++.+..+..+...+ +++.--...+.++.+-.
T Consensus 80 ~k---------------~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~ 144 (237)
T PF00261_consen 80 RK---------------VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK 144 (237)
T ss_dssp HH---------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Confidence 44 4555555555555566666677777777777777666554 45555566777777877
Q ss_pred hHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhh
Q 009482 330 ELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDF 409 (533)
Q Consensus 330 EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F 409 (533)
+|+-+.+.|.+---.|+-+-+.+-+. + +.+-.+=..|+.-|.+.-.-.-.-|..+......|..++..|...-..|
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~r---e-~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASER---E-DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777655444444333322110 0 1111122233333333333333333334444444444444444444444
Q ss_pred hhhhhhhhhchhh
Q 009482 410 QEYQSSINAKYDS 422 (533)
Q Consensus 410 ~e~QssId~k~~~ 422 (533)
...+-.+|.-++.
T Consensus 221 ~~~~~eld~~l~e 233 (237)
T PF00261_consen 221 KKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.80 E-value=35 Score=43.20 Aligned_cols=342 Identities=17% Similarity=0.213 Sum_probs=170.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHH---HHHHHHHhhhhhchHHHHHHhHH
Q 009482 165 DPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQ---LEKQLDEACEAEDFEAAQRISDL 241 (533)
Q Consensus 165 ~~~erl~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~---LE~eLEeACEaEDFe~AErISds 241 (533)
.+..+++.+++|+..-...-.+++......+.+.-..|.+--++.+.-.--++. .-.++-++|- -|+ +-+-+.
T Consensus 1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~--k~e--~~~~~~ 1373 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKK--KFE--EEVLQR 1373 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHH
Confidence 355557778888888777778888888888888777777666655544322222 2222222221 111 112233
Q ss_pred HHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhH
Q 009482 242 LAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLAST 321 (533)
Q Consensus 242 LAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskEme~W~ss~ 321 (533)
+..+|..|..+..-+-.++...+.+..++...-..+-....|...+.-. .+..+.+-..+.+=..=..+=+..|....
T Consensus 1374 ~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d--~~~~~~~~~~le~k~k~f~k~l~e~k~~~ 1451 (1930)
T KOG0161|consen 1374 LEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD--LERSRAAVAALEKKQKRFEKLLAEWKKKL 1451 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555555555544444322221111111111100 01111112222222222334455555555
Q ss_pred hhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHH
Q 009482 322 EALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEER 401 (533)
Q Consensus 322 E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~er 401 (533)
+.|-.--=...-|.+-...=...|.+.++.+.+ .++.+-..+..|..|+.+|-.-+...++-+.+...-.+..+.+
T Consensus 1452 e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e----~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1452 EKLQAELDAAQRELRQLSTELQKLKNALEELLE----QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443221111122222222222233333333333 5666666666677777666655555444444433333333333
Q ss_pred HHHHhhhhhhhhhh----hhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccc--------hHHHHHhcHHHH
Q 009482 402 ISIVVSDFQEYQSS----INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTK--------LKELARVSADEA 469 (533)
Q Consensus 402 Is~VVS~F~e~Qss----Id~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gak--------LRe~a~~s~~EA 469 (533)
+..+=....|...+ =+.++. ++-. +.-.|.+|+++|..-++.-.. ++.+...-.+|+
T Consensus 1528 ~~elQ~aLeElE~~le~eE~~~lr-~~~~----------~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~ 1596 (1930)
T KOG0161|consen 1528 KEELQAALEELEAALEAEEDKKLR-LQLE----------LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAET 1596 (1930)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHH-HHHH----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33322222222221 111111 2222 455677777777765544322 333344445788
Q ss_pred HHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 009482 470 KEYWEVVELRRSLMSSILK-------SREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTS 527 (533)
Q Consensus 470 k~~qe~V~lRR~LassIlK-------SrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~~~~ 527 (533)
+.=.+++.+.+|+-.-|=. +.--+..+.|.=-++...+++||.++.+++.+.+++.+-
T Consensus 1597 r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q 1661 (1930)
T KOG0161|consen 1597 RSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQ 1661 (1930)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888866544422 333455566666678889999999999999999998753
No 13
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.43 E-value=25 Score=38.43 Aligned_cols=263 Identities=17% Similarity=0.222 Sum_probs=125.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH----------HhhhhhchHHH
Q 009482 166 PHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLD----------EACEAEDFEAA 235 (533)
Q Consensus 166 ~~erl~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLE----------eACEaEDFe~A 235 (533)
++++...|+..+..=+.+=.+--..|...|..--.-|+.+..+-.+-..--..||.+|. +.-++|||..|
T Consensus 117 ~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A 196 (569)
T PRK04778 117 IEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEA 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34444445555554444445555667777777777788887776666666677887775 46789999999
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHH--HhhhhhhhhHHHHHHHhhhhcHHH
Q 009482 236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLD--HFSADASNSADTFLKKAESLSSEE 313 (533)
Q Consensus 236 ErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~--~FakdA~~~A~~~~k~A~~~sskE 313 (533)
..|-+.|...=......+. .+=.+=.+++.++=.||.-=..+-.=|. +|.=+ | ..+.++-..+. +.
T Consensus 197 ~e~l~~l~~~~~~l~~~~~-------~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~---~-~~i~~~i~~l~-~~ 264 (569)
T PRK04778 197 REILDQLEEELAALEQIME-------EIPELLKELQTELPDQLQELKAGYRELVEEGYHLD---H-LDIEKEIQDLK-EQ 264 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC---C-CChHHHHHHHH-HH
Confidence 8876655433222222221 1212223344444344432111111111 11100 0 01111111110 11
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhh---hHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 009482 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDD---LREKEILYKKKDILTNELQKLLALVRDKEKEIAE 390 (533)
Q Consensus 314 me~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdD---krEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAe 390 (533)
|..-......|+.++. .+.--.++.-|+++-+.= ..-+...-|....+++-|.++-+-.+.-..||+.
T Consensus 265 i~~~~~~l~~l~l~~~---------~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 265 IDENLALLEELDLDEA---------EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHhcChHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222222222 222223344444443221 1122233344455555566655555555666666
Q ss_pred hcch----------HHHHHHHHHHHhhhhhhhhhhhhhc---hhhHHHHHHhhhhhhHHhhhhHHHHhHhhh
Q 009482 391 NDSN----------IRAVEERISIVVSDFQEYQSSINAK---YDSLQSIISQLNLESEAMSMKKKEIDKFLN 449 (533)
Q Consensus 391 Nds~----------IkaV~erIs~VVS~F~e~QssId~k---~~~Lqs~lsq~dletEaL~lKkkeID~fls 449 (533)
.+.+ ++..+++|..+-..|...+..|+.+ |+.++..+..+...-+.+.-.+.+|-+.|.
T Consensus 336 l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~ 407 (569)
T PRK04778 336 VKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407 (569)
T ss_pred HHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 6666677777777776666555433 555555555555555555555555555444
No 14
>PRK11637 AmiB activator; Provisional
Probab=91.34 E-value=21 Score=37.32 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhh
Q 009482 369 ILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQ 410 (533)
Q Consensus 369 ~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~ 410 (533)
.+..+|..+=.-+...+.+|++...+|...+..+...+...+
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555544444333
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.78 E-value=39 Score=37.95 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=48.9
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhh
Q 009482 236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSA 293 (533)
Q Consensus 236 ErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~Fak 293 (533)
..+-..+..+.++.+.|-+.|+...-.|+.+-.+.+++..+.=...+|-..|..+.++
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888999999999999999999999999998888888888888887754
No 16
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=89.10 E-value=7.6 Score=37.39 Aligned_cols=123 Identities=26% Similarity=0.335 Sum_probs=84.9
Q ss_pred HHHHhhhhcHHHHHHHHhhHhhhhhhhhhHH--HHHhH--HHHHHhh---hhhhhhhhhhhhhHHHHHHhhhhhhHHHHH
Q 009482 302 FLKKAESLSSEEMEKWLASTEALEGRKIELE--IESHL--VNEARAV---LNNSIEHSVEDDLREKEILYKKKDILTNEL 374 (533)
Q Consensus 302 ~~k~A~~~sskEme~W~ss~E~LE~kK~Ele--iEs~~--v~eAr~~---Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL 374 (533)
....++++|..-+--++...|.+|.||+|.. |..++ |.++--. +-.-+|..+-+-++|-+++.||=|....||
T Consensus 21 ~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreL 100 (159)
T PF04949_consen 21 MDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNREL 100 (159)
T ss_pred cchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888899999999998863 22221 2222222 223355678888999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHH
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK 442 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkk 442 (533)
.-|=.-++.||+|.-+.-....+-...=. .|-..|-.+-.++|.+.+||=
T Consensus 101 kpl~~~cqKKEkEykealea~nEknkeK~------------------~Lv~~L~eLv~eSE~~rmKKL 150 (159)
T PF04949_consen 101 KPLGQSCQKKEKEYKEALEAFNEKNKEKA------------------QLVTRLMELVSESERLRMKKL 150 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765332222222222 233344446678888888873
No 17
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.08 E-value=1.5 Score=50.87 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=30.4
Q ss_pred HHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhh------hhHHHHhHhhhhhhhcccchHHHHHh
Q 009482 402 ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMS------MKKKEIDKFLNDEVDRGTKLKELARV 464 (533)
Q Consensus 402 Is~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~------lKkkeID~fls~ee~~gakLRe~a~~ 464 (533)
..-+.+-||+. --..|+.|-+-..+|..--+.|+ -||=-+.+|. ++||.|-++
T Consensus 930 F~ekM~~F~e~---a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFF-------aDi~tFrna 988 (1102)
T KOG1924|consen 930 FVEKMTSFHEK---AREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFF-------ADIRTFRNA 988 (1102)
T ss_pred HHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHH-------HHHHHHHHH
Confidence 33445555553 22346666666666666666655 3666677776 467777443
No 18
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.81 E-value=62 Score=35.80 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHHH
Q 009482 212 ASLRHSQLEKQLDE 225 (533)
Q Consensus 212 as~khk~LE~eLEe 225 (533)
...+..+||.++..
T Consensus 207 ~~~~~~~le~el~~ 220 (650)
T TIGR03185 207 ILSEIEALEAELKE 220 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.18 E-value=54 Score=34.55 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 009482 500 EEKLSAEVQTLQQEASAARASLQ 522 (533)
Q Consensus 500 EEel~~dvQ~LrQqvS~AR~SLQ 522 (533)
.+++..++..+.++...++..+.
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~ 396 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKS 396 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444433
No 20
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=83.32 E-value=21 Score=33.21 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|...|..+++.+...-..+.+++.... .+..||..+++.-.++|..-.+.+.++|..-...
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~--------------~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~ 118 (167)
T PRK08475 53 SRINKISKRLEEIQEKLKESKEKKEDALKKLE--------------EAKEKAELIVETAKKEAYILTQKIEKQTKDDIEN 118 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777666666555555543322 5667888889988999999999999999999999
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHH
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEA 341 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eA 341 (533)
-++.|.+..+ .|.++.-.++-.++++++
T Consensus 119 ~~~~a~~~ie-~Ek~~a~~elk~eii~~~ 146 (167)
T PRK08475 119 LIKSFEELME-FEVRKMEREVVEEVLNEL 146 (167)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999998876 455666666666666554
No 21
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=83.01 E-value=49 Score=32.39 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=80.9
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|...|..+++-+...-..+.+++... . .+..|+..++++..+.|..-...+..+|..=..+
T Consensus 36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l-------~-------~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~ 101 (246)
T TIGR03321 36 AREKKIAGELADADTKKREAEQERREYEEKN-------E-------ELDQQREVLLTKAKEEAQAERQRLLDEAREEADE 101 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776655555444322 2 4789999999999999999999999999999999
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|....+. |..+.--++..++++-|-..-...|.+.+
T Consensus 102 ~~~~a~~~ie~-E~~~a~~~l~~ei~~la~~~A~kil~~~~ 141 (246)
T TIGR03321 102 IREKWQEALRR-EQAALSDELRRRTGAEVFAIARKVLTDLA 141 (246)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988764 66666667777777776666666666665
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.65 E-value=41 Score=34.11 Aligned_cols=60 Identities=33% Similarity=0.390 Sum_probs=53.5
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhh
Q 009482 348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSD 408 (533)
Q Consensus 348 sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~ 408 (533)
++...+..-+-|++-+.+.-.-+-.|+++|=..|++-|.+|.+-..+|+-.+++++ .|++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-~v~~ 87 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-AVKD 87 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 67777888888999999999999999999999999999999999999999999994 4444
No 23
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.48 E-value=47 Score=34.42 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=83.5
Q ss_pred hhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 009482 306 AESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKE 385 (533)
Q Consensus 306 A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE 385 (533)
|.-.+.+..-.|.+.. ++.=|-.++-....+..-...|+.-++-+ ..=+..|..+.+.|..|+..|-+.+
T Consensus 126 aRl~ak~~WYeWR~kl--legLk~~L~~~~~~l~~D~~~L~~~~~~l----~~~~~~l~~~~~~L~~e~~~L~~~~---- 195 (312)
T smart00787 126 ARLEAKKMWYEWRMKL--LEGLKEGLDENLEGLKEDYKLLMKELELL----NSIKPKLRDRKDALEEELRQLKQLE---- 195 (312)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 3344555667887765 55544444443333333333333322211 1234456777888888888765544
Q ss_pred hhhhhhcch-HHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHh
Q 009482 386 KEIAENDSN-IRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARV 464 (533)
Q Consensus 386 ~EIAeNds~-IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~ 464 (533)
.||..||.. +....++|..+-.....++.. +..++..+..+...-++..-+|.++-.=|...+. .+.+.=..
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~----l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~---~~~~~r~~ 268 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKK----LEELEEELQELESKIEDLTNKKSELNTEIAEAEK---KLEQCRGF 268 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCC
Confidence 577777764 456667777665544444333 4445555555555555555555555544444443 22233334
Q ss_pred cHHHHHHHHHHHHHHHH
Q 009482 465 SADEAKEYWEVVELRRS 481 (533)
Q Consensus 465 s~~EAk~~qe~V~lRR~ 481 (533)
+..|+..++..|..-.+
T Consensus 269 t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 269 TFKEIEKLKEQLKLLQS 285 (312)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=80.82 E-value=3.2 Score=48.30 Aligned_cols=12 Identities=50% Similarity=0.545 Sum_probs=7.5
Q ss_pred hhceeccCCccc
Q 009482 11 EGMVLFTPSQLA 22 (533)
Q Consensus 11 EGMVLF~Ps~~~ 22 (533)
|+|-|=+|++..
T Consensus 510 e~~al~s~~~~~ 521 (1102)
T KOG1924|consen 510 EKQALSSPSQLL 521 (1102)
T ss_pred hhhhccCcccCC
Confidence 466677776643
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.13 E-value=1.9e+02 Score=37.23 Aligned_cols=305 Identities=18% Similarity=0.235 Sum_probs=144.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHH
Q 009482 166 PHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAA 245 (533)
Q Consensus 166 ~~erl~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~ 245 (533)
.++.++..++........+...+...++.+.++-+++|+.=.-+.....+-.++++++-. ++.-...+
T Consensus 1204 ~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~------------l~~q~~~l 1271 (1930)
T KOG0161|consen 1204 DKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND------------LTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHh
Confidence 344477777777777777777777777887777777755544666666666666655432 22222223
Q ss_pred HHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhh----------------------hhhHhHHHHHHHhhhhhhhhHHHHH
Q 009482 246 ETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQI----------------------AAEQDCASLLDHFSADASNSADTFL 303 (533)
Q Consensus 246 EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqI----------------------aaEEE~A~lL~~FakdA~~~A~~~~ 303 (533)
-++-.-+...|-++++.|..+ +++...+.+|| ..+.||..|.+++-.+ .+.-+..+
T Consensus 1272 ~~E~~~l~~~lee~e~~~~~~-~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee-~e~~~~l~ 1349 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSAL-SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEE-QEAKNELE 1349 (1930)
T ss_pred hhhHHHHhhHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333333333344444433332 12222222222 2345555555555433 33334444
Q ss_pred HHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 009482 304 KKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRD 383 (533)
Q Consensus 304 k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~ 383 (533)
+++.... -+|-+|...++..-.-. .. |-+...|+-.....++++.++.+.+
T Consensus 1350 r~lsk~~-~e~~~~~~k~e~~~~~~------~e----------------------elee~kk~l~~~lq~~qe~~e~~~~ 1400 (1930)
T KOG0161|consen 1350 RKLSKAN-AELAQWKKKFEEEVLQR------LE----------------------ELEELKKKLQQRLQELEEQIEAANA 1400 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH------HH----------------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444433 35667765544322111 01 1222223333333444444444444
Q ss_pred hhhhhhhhcch-HHHHHHH------HHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhccc
Q 009482 384 KEKEIAENDSN-IRAVEER------ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGT 456 (533)
Q Consensus 384 KE~EIAeNds~-IkaV~er------Is~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~ga 456 (533)
+...+-..-.+ .++++-. ...+++.-.. |..+....+...+.-.+.|+ .++|.......+.+.
T Consensus 1401 ~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~-------k~k~f~k~l~e~k~~~e~l~---~Eld~aq~e~r~~~t 1470 (1930)
T KOG0161|consen 1401 KNASLEKAKNRLQQELEDLQLDLERSRAAVAALEK-------KQKRFEKLLAEWKKKLEKLQ---AELDAAQRELRQLST 1470 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHH
Confidence 44444222222 1222222 2222333333 33333333333333333333 244445555555566
Q ss_pred chHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009482 457 KLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQV 523 (533)
Q Consensus 457 kLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE 523 (533)
++.-+.+.-.+-.....++....++|.+.|.+.-..+..+-|.=.++-.+...+.++..+-++.|-|
T Consensus 1471 el~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666554444445555556666666776666666655555545544444455554444444443
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.74 E-value=1.1e+02 Score=34.45 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=29.1
Q ss_pred hhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHH
Q 009482 211 LASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDH 290 (533)
Q Consensus 211 sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~ 290 (533)
.+..+-.-|+.+||+. +|++..|+.+....+..+-.+-.++..+-..--..+++|..|-.+
T Consensus 133 vV~~ka~~lQ~qlE~~-------------------qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 133 VVTTKAQLLQNQLEEC-------------------QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred EEehhHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555577777753 244444444444444444444444433322222344555555544
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.57 E-value=1e+02 Score=32.60 Aligned_cols=34 Identities=9% Similarity=0.256 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHH
Q 009482 241 LLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVL 274 (533)
Q Consensus 241 sLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL 274 (533)
.++.++++.+.+......-+...+.+..+|.++-
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666666666666653
No 28
>PF13514 AAA_27: AAA domain
Probab=76.60 E-value=1.7e+02 Score=34.66 Aligned_cols=116 Identities=29% Similarity=0.300 Sum_probs=55.9
Q ss_pred hhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhh
Q 009482 229 AEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAES 308 (533)
Q Consensus 229 aEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~ 308 (533)
++-||.|-+-.|.||+.--..-.-..-++............+..+..-.=+++.+-+.+-..++.-..... ..
T Consensus 525 ~~~fe~a~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-------~p 597 (1111)
T PF13514_consen 525 AEAFEAAVREADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG-------LP 597 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CC
Confidence 34566666666666654433333333333333333333333333333333344444444444433332211 23
Q ss_pred hcHHHHHHHHhhHhhh-------hhhhhhHHHHHhHHHHHHhhhhhhhhh
Q 009482 309 LSSEEMEKWLASTEAL-------EGRKIELEIESHLVNEARAVLNNSIEH 351 (533)
Q Consensus 309 ~sskEme~W~ss~E~L-------E~kK~EleiEs~~v~eAr~~Ln~sIeh 351 (533)
++..+|..|...-+.+ ....-+++--..-...++..|...+..
T Consensus 598 ~~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 647 (1111)
T PF13514_consen 598 LSPAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAA 647 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999998776544 333333433444455556666655543
No 29
>PRK12704 phosphodiesterase; Provisional
Probab=75.82 E-value=99 Score=34.10 Aligned_cols=59 Identities=17% Similarity=0.405 Sum_probs=39.5
Q ss_pred hhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHH
Q 009482 410 QEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471 (533)
Q Consensus 410 ~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~ 471 (533)
...+-.++.+-..|......+....+.|.-+++++++.+.... .+|-.+++.+.+|||.
T Consensus 99 e~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~---~~l~~~a~lt~~ea~~ 157 (520)
T PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL---QELERISGLTAEEAKE 157 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCCHHHHHH
Confidence 3344445555555555555566666666677777776665443 4799999999999985
No 30
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=74.96 E-value=81 Score=30.23 Aligned_cols=93 Identities=19% Similarity=0.396 Sum_probs=61.6
Q ss_pred HHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcc
Q 009482 376 KLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRG 455 (533)
Q Consensus 376 ~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~g 455 (533)
+.+.+=..-|.|+.+-...++..+.||..--.......-.++.+-..|.....+++.....|--++++++.++... .
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~---~ 137 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ---Q 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4444445556666666666777777776555444445555555555555556666666666777777777766544 4
Q ss_pred cchHHHHHhcHHHHHH
Q 009482 456 TKLKELARVSADEAKE 471 (533)
Q Consensus 456 akLRe~a~~s~~EAk~ 471 (533)
.+|-.+++.+.+|||.
T Consensus 138 ~~Le~iAglT~eEAk~ 153 (201)
T PF12072_consen 138 QELEEIAGLTAEEAKE 153 (201)
T ss_pred HHHHHHhCCCHHHHHH
Confidence 5699999999999985
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.84 E-value=87 Score=30.55 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=110.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhh----------hhhhhchhhHHHHHHhh
Q 009482 361 EILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQ----------SSINAKYDSLQSIISQL 430 (533)
Q Consensus 361 e~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~Q----------ssId~k~~~Lqs~lsq~ 430 (533)
....++.+-.-.|+..|=..+.+-|.++...+.++..+..|+..+=..+.+++ ...+-+++.|...+..+
T Consensus 25 ~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea 104 (237)
T PF00261_consen 25 KEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEA 104 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888888888888888888888888777666553 45678888888888888
Q ss_pred hhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHHHH
Q 009482 431 NLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVK-LAKTEEKLSAEVQT 509 (533)
Q Consensus 431 dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~-L~k~EEel~~dvQ~ 509 (533)
....+..-.|-.|+..=|...+..=...-+=+..+....+..++-+. .+...||+-|-+.+ ....|+.+-..|..
T Consensus 105 ~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~----~~~~~lk~lE~~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 105 KRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK----SVGNNLKSLEASEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH----HHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 88888888888888877777776666666666666666666555543 34455555555543 44556777777788
Q ss_pred HHHHHHHHHH
Q 009482 510 LQQEASAARA 519 (533)
Q Consensus 510 LrQqvS~AR~ 519 (533)
|.+++..|-.
T Consensus 181 L~~~lkeaE~ 190 (237)
T PF00261_consen 181 LEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776643
No 32
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.78 E-value=1.7e+02 Score=33.82 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=21.6
Q ss_pred hhhHHHHHH---HHHHHHHhhhhhhhhhc---chHHHHHHHHHHHhhh
Q 009482 367 KDILTNELQ---KLLALVRDKEKEIAEND---SNIRAVEERISIVVSD 408 (533)
Q Consensus 367 kd~L~~EL~---~LL~lVk~KE~EIAeNd---s~IkaV~erIs~VVS~ 408 (533)
.+.+-.|+. +++.-++..+...+.+. ..|+.+.+++..+-+.
T Consensus 554 ~~~l~~e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~ 601 (908)
T COG0419 554 LQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKK 601 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 55555555555555555 5555555444444433
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.03 E-value=2.4e+02 Score=35.28 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhh
Q 009482 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAE 281 (533)
Q Consensus 234 ~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaE 281 (533)
.||.|-..|..+++-....-.|+++|+.+.-..---|..|=++--++|
T Consensus 1564 ~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1564 QAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888877766554444444433333343
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.72 E-value=1.8e+02 Score=33.58 Aligned_cols=72 Identities=26% Similarity=0.379 Sum_probs=42.5
Q ss_pred cHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 009482 310 SSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIA 389 (533)
Q Consensus 310 sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIA 389 (533)
+.+|+|-..+-.-++.-|...|| .-|=-|.|.-|. +=.+.-+-|| +|+-+-..++.||.||.
T Consensus 585 ~~~~~e~L~~aL~amqdk~~~LE--~sLsaEtriKld--LfsaLg~akr--------------q~ei~~~~~~~~d~ei~ 646 (697)
T PF09726_consen 585 SEKDTEVLMSALSAMQDKNQHLE--NSLSAETRIKLD--LFSALGDAKR--------------QLEIAQGQLRKKDKEIE 646 (697)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH--HHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 44566666666666666665543 333333333321 2233333444 45555667899999999
Q ss_pred hhcchHHHHH
Q 009482 390 ENDSNIRAVE 399 (533)
Q Consensus 390 eNds~IkaV~ 399 (533)
|..+.|.+|-
T Consensus 647 ~lk~ki~~~~ 656 (697)
T PF09726_consen 647 ELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHH
Confidence 9988887763
No 35
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=73.08 E-value=21 Score=41.82 Aligned_cols=84 Identities=24% Similarity=0.302 Sum_probs=64.5
Q ss_pred HHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 009482 426 IISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSA 505 (533)
Q Consensus 426 ~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~ 505 (533)
....+..|-.+|.--|.+|.....+.++ .+.+..+..-+++..||+|.++.++.| ..-
T Consensus 137 e~~~v~~eR~~L~~e~~~in~~~~~~e~----------ls~~~~~~ld~I~~~RReLf~~~l~~~------------~~i 194 (835)
T COG3264 137 EQFEVTQERDALQAEKAYINALEGQAEQ----------LTAEVRDILDQILDTRRELLNSLLSQR------------EAI 194 (835)
T ss_pred chhHHHHHHHHHhhhHHHHHHHhcchhh----------hCHHHHHHHHHHHHHHHHHHHHHHhhc------------ccc
Confidence 3445566666777777777766655544 344555566789999999999999999 334
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccc
Q 009482 506 EVQTLQQEASAARASLQVNFTSQLFY 531 (533)
Q Consensus 506 dvQ~LrQqvS~AR~SLQE~~~~~~~~ 531 (533)
+.|+.++|++++...|+.....|.|+
T Consensus 195 s~~l~~~q~~~~~d~l~~~~~~~~fW 220 (835)
T COG3264 195 SLQLNQQQLSAASDELRSLLHQQSFW 220 (835)
T ss_pred CHhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 67899999999999999999998886
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.14 E-value=2.5e+02 Score=34.73 Aligned_cols=140 Identities=21% Similarity=0.291 Sum_probs=94.8
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHH
Q 009482 345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQ 424 (533)
Q Consensus 345 Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lq 424 (533)
++...+.-...-+++-+.+..+..-+.+||..++.-|-....|+.---+.++-.-.+-+.++..|.+.|+++...-.+++
T Consensus 459 ~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~ 538 (1293)
T KOG0996|consen 459 EERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLK 538 (1293)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444566667777777888888888888888888888777778888888888888888888888777777777
Q ss_pred HHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 009482 425 SIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLS 504 (533)
Q Consensus 425 s~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~ 504 (533)
+..+.++.-.+.|...|.|++.- .+.| -.+.+++..+.
T Consensus 539 e~~~~l~~~k~~l~~~k~e~~~~-------------------------------~k~l-----------~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 539 EKKTELDDLKEELPSLKQELKEK-------------------------------EKEL-----------PKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH-------------------------------HHhH-----------HHHHHHHHHHH
Confidence 66666665555555554444321 1111 12445666677
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 009482 505 AEVQTLQQEASAARASLQVNFT 526 (533)
Q Consensus 505 ~dvQ~LrQqvS~AR~SLQE~~~ 526 (533)
...+.+||.+-.|+.++|..++
T Consensus 577 ~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 577 SQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 7777777777777777776554
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=71.50 E-value=1.6e+02 Score=32.21 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHH---HHH
Q 009482 214 LRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASL---LDH 290 (533)
Q Consensus 214 ~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~l---L~~ 290 (533)
.++..++.||.-+= +-+-++-..|..+|++|...+.=|-.|.--.|-+-.+|+.+..++..+.+.+-.. +.+
T Consensus 27 e~~~~~e~eL~~~q-----eel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e 101 (522)
T PF05701_consen 27 ERVKEKETELEKAQ-----EELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKE 101 (522)
T ss_pred hhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 45566667776543 2345667789999999999999999999999999999999999988887665432 222
Q ss_pred hhhhhhhhHHHHH----HHhhhhcHHHHHHHHhhHhhhhhhhhhH
Q 009482 291 FSADASNSADTFL----KKAESLSSEEMEKWLASTEALEGRKIEL 331 (533)
Q Consensus 291 FakdA~~~A~~~~----k~A~~~sskEme~W~ss~E~LE~kK~El 331 (533)
.-......+...+ ..+.+-|..-|-...+..+.|+.-+.||
T Consensus 102 ~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~ 146 (522)
T PF05701_consen 102 LEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQEL 146 (522)
T ss_pred HhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3233333333323 3366667777777777777665444433
No 38
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=70.68 E-value=84 Score=28.57 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=75.0
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHH
Q 009482 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (533)
Q Consensus 234 ~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskE 313 (533)
|-++|...|..+++.+......+.+++ ..--.+..|+..+++..-++|....+.+..+|..=..+-
T Consensus 37 R~~~I~~~l~~A~~~~~eA~~~~~e~~--------------~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~ 102 (159)
T PRK13461 37 RQSEIDNKIEKADEDQKKARELKLKNE--------------RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLI 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566555555555444444433 333456788888888888888888899999999888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhh
Q 009482 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVE 354 (533)
Q Consensus 314 me~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vE 354 (533)
++.|....+ .+..+.--++..++++-|-......|.+.+-
T Consensus 103 ~~~a~~~i~-~e~~~a~~~l~~ei~~lA~~~a~kil~~~~~ 142 (159)
T PRK13461 103 IERAKLEAQ-REKEKAEYEIKNQAVDLAVLLSSKALEESID 142 (159)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHcC
Confidence 999988776 4666777777777777777766666666663
No 39
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.42 E-value=1.3e+02 Score=30.39 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=33.5
Q ss_pred hHHHHhHhhhhhhhcccchHHH-HHhcHHHHHHHHHHHHHHHHHHHH
Q 009482 440 KKKEIDKFLNDEVDRGTKLKEL-ARVSADEAKEYWEVVELRRSLMSS 485 (533)
Q Consensus 440 KkkeID~fls~ee~~gakLRe~-a~~s~~EAk~~qe~V~lRR~Lass 485 (533)
-|.|++.| .++|-.++|.+ +..+..-...|++++..|++++.|
T Consensus 200 ~k~e~~Rf---~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~fl~~ 243 (243)
T cd07666 200 LKADWERW---KQNMQTDLRSAFTDMAENNISYYEECLATWESFLHS 243 (243)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35899998 45677778864 566777778888999999998764
No 40
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=69.00 E-value=86 Score=28.03 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=74.9
Q ss_pred HHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhh
Q 009482 244 AAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEA 323 (533)
Q Consensus 244 a~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskEme~W~ss~E~ 323 (533)
.+++-++.+...|.+|+....-....+.+.=..--.+..|+..+++.--.+|..-.+.+..+|..-...-++.|..-.+
T Consensus 32 ~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~- 110 (156)
T PRK05759 32 ALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIE- 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555555555555555555555555555555667777777888877888888888888888877777777776554
Q ss_pred hhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 324 LEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 324 LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+.++...++..+++.-|..-....+.+.+
T Consensus 111 ~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~ 140 (156)
T PRK05759 111 QERKRAREELRKQVADLAVAGAEKILGREL 140 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 456677778888888887777766666665
No 41
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=68.92 E-value=1.7e+02 Score=36.12 Aligned_cols=132 Identities=22% Similarity=0.211 Sum_probs=61.4
Q ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhh-----------------hcchHHHHHHHHHHHhhhhhhhhhh
Q 009482 353 VEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAE-----------------NDSNIRAVEERISIVVSDFQEYQSS 415 (533)
Q Consensus 353 vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAe-----------------Nds~IkaV~erIs~VVS~F~e~Qss 415 (533)
|.+-.+|.+.+.++.+.+.++++++..+-+.-|.-+.+ ...+|+.+.+ -+.+|.+.=+.
T Consensus 517 ~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e----~~~~~~d~l~~ 592 (1317)
T KOG0612|consen 517 VRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE----ENRDLEDKLSL 592 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh----ccccHHHHHHH
Confidence 44455566666666666666666666665555533322 3333444433 12233333222
Q ss_pred hhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009482 416 INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSRE 491 (533)
Q Consensus 416 Id~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrE 491 (533)
+..--..|-....++-.+.+.....+.+|..-+..-+..-+.|.+...+-.-+ .+.+-++||..+..+--+=+
T Consensus 593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~---l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKE---LLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 22222233333344445555555555555555554444444444433332222 23333366666665554433
No 42
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=68.11 E-value=97 Score=28.30 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=62.7
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|.+.|..+++-+...-..+.+.+.... .+..|+...++.--..|......+..+|..-...
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~--------------~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~ 104 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLK--------------EARAERDAILKEAREIKEKMIADAKEEAQVEGDK 104 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888877777766666655333 3455666666666666666666666666666666
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|...-+ .+..+.--++.++++.-|-.-....|.+.+
T Consensus 105 ~~~~a~~~i~-~ek~~a~~~l~~~i~~la~~~a~kil~~~l 144 (164)
T PRK14471 105 MIEQAKASIE-SEKNAAMAEIKNQVANLSVEIAEKVLRKEL 144 (164)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666665443 234444445555555544444444444434
No 43
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=67.82 E-value=1e+02 Score=28.54 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=70.3
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHH
Q 009482 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (533)
Q Consensus 234 ~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskE 313 (533)
|-++|.++|..+++-+...-..+.+++... -.++.|+...+++.-+.|......+..+|..-...-
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L--------------~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~ 115 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEAEAILRKNRELL--------------AKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKM 115 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555433 346677788888888888888888888888888888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 314 me~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
++.|....+. +..+.--++..+++.-|-.-....|.+.+
T Consensus 116 ~~~a~~~I~~-e~~~a~~~l~~~i~~lA~~~a~kil~~~l 154 (175)
T PRK14472 116 IASAKEEIEQ-EKRRALDVLRNEVADLAVKGAEKIIRTSL 154 (175)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8888876653 55555556666666666555555555554
No 44
>PRK00106 hypothetical protein; Provisional
Probab=67.54 E-value=2e+02 Score=32.35 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=33.2
Q ss_pred hhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHH
Q 009482 415 SINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKE 471 (533)
Q Consensus 415 sId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~ 471 (533)
.++.+-..|......++...+.|.-++++++..+... -.+|-.++..+.+|||.
T Consensus 119 ~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~---~~~Le~~a~lt~~eak~ 172 (535)
T PRK00106 119 NLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQK---KAELERVAALSQAEARE 172 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHH
Confidence 3333444444444444555555556666666655443 34899999999999985
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=66.84 E-value=2e+02 Score=31.50 Aligned_cols=194 Identities=22% Similarity=0.243 Sum_probs=83.3
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHhhhh-----hchHH----HHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhH
Q 009482 200 RRRRKAADDVELASLRHSQLEKQLDEACEA-----EDFEA----AQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKM 270 (533)
Q Consensus 200 ~rRRKaaEd~~sas~khk~LE~eLEeACEa-----EDFe~----AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~km 270 (533)
+-|-+|..+|..|=..-.+|-..|+.+-.. +|.+. +..+-+-.+.- .-...-.=|--+...|..+=.+|
T Consensus 55 ~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~--~~~~~k~ele~~~~q~~~~~~eL 132 (522)
T PF05701_consen 55 REKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEE--ASVAWKAELESAREQYASAVAEL 132 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766644322 33342 22222221110 00000001112223333333333
Q ss_pred HHHHHHhhhhhHhHHHHHH------HhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhh
Q 009482 271 YDVLVSQIAAEQDCASLLD------HFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAV 344 (533)
Q Consensus 271 q~vL~SqIaaEEE~A~lL~------~FakdA~~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~ 344 (533)
.-|-.-=-....|.+++++ .=+.+|...+....+++++|+ +||.....+.+.......+-+-+..-+..+|..
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~-~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~ 211 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELS-KEIIALKESLESAKLAHIEAEEERIEIAAEREQ 211 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222223344444432 224455666666667777764 455555555554444444433333333333333
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhh
Q 009482 345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVS 407 (533)
Q Consensus 345 Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS 407 (533)
.-...+..++.- .++ .+.|..=+...+.-|...+.....|..++..+..+..
T Consensus 212 ~~~~~~~~leea-------e~~----l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 212 DAEEWEKELEEA-------EEE----LEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322322222211 111 1122222244555555666666666666655555554
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.14 E-value=2.2e+02 Score=31.34 Aligned_cols=292 Identities=18% Similarity=0.229 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHhh---hhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHH
Q 009482 214 LRHSQLEKQLDEAC---EAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDH 290 (533)
Q Consensus 214 ~khk~LE~eLEeAC---EaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~ 290 (533)
..-.++|..|.+|- ..=.|-.|.+.- ..+-..|..++..++.|=..|++++.+.=.--++-..|...
T Consensus 79 ~~~~~ie~~l~~ae~~~~~~~f~~a~~~~----------~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~ 148 (569)
T PRK04778 79 NSLPDIEEQLFEAEELNDKFRFRKAKHEI----------NEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL 148 (569)
T ss_pred hhhhhHHHHHHHHHHHHhcccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666555443 333455444433 33445677888899999999999998887777777777777
Q ss_pred hh---hhhhhh-------HHHHHHHhhhhc--HHHHHHHHhhHhhhhhhhhhHHHHHh-------------HHHHHHhhh
Q 009482 291 FS---ADASNS-------ADTFLKKAESLS--SEEMEKWLASTEALEGRKIELEIESH-------------LVNEARAVL 345 (533)
Q Consensus 291 Fa---kdA~~~-------A~~~~k~A~~~s--skEme~W~ss~E~LE~kK~EleiEs~-------------~v~eAr~~L 345 (533)
|. |+..++ .+.+.++-..+- -..++.|.++..-++.+.+=..++.+ ++.++...+
T Consensus 149 y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~ 228 (569)
T PRK04778 149 YRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL 228 (569)
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 333332 222333332222 24677888888777777665555543 344455544
Q ss_pred hhhhhhhhhhhh--H------HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhh------
Q 009482 346 NNSIEHSVEDDL--R------EKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQE------ 411 (533)
Q Consensus 346 n~sIeh~vEdDk--r------EKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e------ 411 (533)
-+-|+++-.-.+ . +..-+.++=+.|.+.|.+.+.++.. -++..-...++.++++|..+-..|..
T Consensus 229 P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~ 306 (569)
T PRK04778 229 PDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARK 306 (569)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332221 1 1112233334455556665555443 34555556666777777666555532
Q ss_pred ----hhhhhhhchhhHHHHHHhhhhhhHHhhhh----HHHHhHhhhhhhhcc---cchHHHHHhcHHHHHHHHHHHHHHH
Q 009482 412 ----YQSSINAKYDSLQSIISQLNLESEAMSMK----KKEIDKFLNDEVDRG---TKLKELARVSADEAKEYWEVVELRR 480 (533)
Q Consensus 412 ----~QssId~k~~~Lqs~lsq~dletEaL~lK----kkeID~fls~ee~~g---akLRe~a~~s~~EAk~~qe~V~lRR 480 (533)
.+..|...++.++....++..+++.|..- -+|+..+-...++-. ..+.++......-+..|.++.+...
T Consensus 307 ~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le 386 (569)
T PRK04778 307 YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE 386 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23333344444444444444444444433 333333333322211 1222233333333334555555544
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009482 481 SLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVN 524 (533)
Q Consensus 481 ~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~ 524 (533)
.+...+-. +-+-..++...++.|+..-..||..|+.+
T Consensus 387 el~e~lee-------ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 387 EILKQLEE-------IEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333 33444556666666777777776666654
No 47
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=65.10 E-value=48 Score=29.70 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=18.9
Q ss_pred hhhchhhHHHHHHhhhhhhHHhh
Q 009482 416 INAKYDSLQSIISQLNLESEAMS 438 (533)
Q Consensus 416 Id~k~~~Lqs~lsq~dletEaL~ 438 (533)
-++=+..||...++.+.+++.|.
T Consensus 94 ~~~l~~~L~~~~~e~eeeSe~la 116 (150)
T PF07200_consen 94 PDALLARLQAAASEAEEESEELA 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999983
No 48
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=63.98 E-value=1.3e+02 Score=28.23 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=73.8
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-+.|.++|..+++-+...-..+.+++. .--.+..|+..+++...+.|....+.+..+|+.=...
T Consensus 55 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~--------------~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~ 120 (184)
T CHL00019 55 NRKQTILNTIRNSEERREEAIEKLEKARA--------------RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLER 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666666665554 2234677888888888888888888889999888888
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|...-+. |..+..-++..++++-|-..-...|.+.+
T Consensus 121 ~~~~a~~~ie~-Ek~~a~~~l~~ei~~lav~~A~kil~~~l 160 (184)
T CHL00019 121 LENYKNETIRF-EQQRAINQVRQQVFQLALQRALGTLNSCL 160 (184)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 88888876653 44555555555555555555555555555
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.84 E-value=1.8e+02 Score=29.81 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=65.5
Q ss_pred hhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 009482 306 AESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKE 385 (533)
Q Consensus 306 A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE 385 (533)
|.-.+.+..-.|.+. .++.-+-.|+-....+..-...|...++-+- .-...+..+.+.|+.|+..|=+.+
T Consensus 131 aRl~aK~~WYeWR~~--ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~----~~~~~l~~~~~~L~~e~~~Lk~~~---- 200 (325)
T PF08317_consen 131 ARLEAKKMWYEWRMQ--LLEGLKEGLEENLELLQEDYAKLDKQLEQLD----ELLPKLRERKAELEEELENLKQLV---- 200 (325)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 334445566778743 3444444444444444443333333332221 223445666777777777665544
Q ss_pred hhhhhhcc-hHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhh
Q 009482 386 KEIAENDS-NIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLN 449 (533)
Q Consensus 386 ~EIAeNds-~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls 449 (533)
.||..||. .+.+...+|..+-....+.+ .++..|+..+..++...+.+..+|.+.-.=|.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k----~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKK----KELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666663 45555566655544443333 24445555555555555555555554444333
No 50
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=63.13 E-value=1.7e+02 Score=29.26 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|.+.|..+++-+...-..+.+++.. .-.++.|+..++++..+.|......++.+|..=...
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~--------------l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~ 101 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQK--------------QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVAT 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766655555554433 235788999999999999999999999999999999
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|...-+. |.++.--++-.++..-|-..-...|...+
T Consensus 102 ~~~~a~~~ie~-Ek~~a~~~L~~~v~~la~~~A~kiL~~~~ 141 (250)
T PRK14474 102 ARDEWLEQLER-EKQEFFKALQQQTGQQMVKIIRAALADLA 141 (250)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999876553 45555555555555555444444444444
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.01 E-value=2.6e+02 Score=31.10 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhh-----hhchHH-HHHHhHHHHHHHHhHHHHHHHHHhhhhh--hchhh
Q 009482 196 KDSIRRRRKAADDVELASLRHSQLEKQLDEACE-----AEDFEA-AQRISDLLAAAETHQQSLLIALRDAEAH--CDAID 267 (533)
Q Consensus 196 k~~~~rRRKaaEd~~sas~khk~LE~eLEeACE-----aEDFe~-AErISdsLAa~EKek~~ll~aLRdAE~~--~DsvD 267 (533)
+++........+++...-....+++.+++++=+ .+++-. -+.+-..+..+++++......|++.-+. +=++-
T Consensus 219 ~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~ 298 (650)
T TIGR03185 219 KEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLI 298 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhh
Confidence 333333444444444444444444444443322 332211 2244455555555555555555543322 22334
Q ss_pred hhHHHHHHHhhhhhHh
Q 009482 268 SKMYDVLVSQIAAEQD 283 (533)
Q Consensus 268 ~kmq~vL~SqIaaEEE 283 (533)
.++-.-+..|+..|.+
T Consensus 299 ~~ll~~~~~q~~~e~~ 314 (650)
T TIGR03185 299 PNLLDSTKAQLQKEEQ 314 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666667766664
No 52
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=61.77 E-value=2e+02 Score=31.04 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=70.5
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHH
Q 009482 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE 313 (533)
Q Consensus 234 ~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskE 313 (533)
|-++|.+.|..+++-+..+-.+..+.+.. --.+..|+..++++--++|..-.+.+..+|+.=..+-
T Consensus 33 R~~~I~~~L~eAe~a~~ea~~~~~~~e~~--------------L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i 98 (445)
T PRK13428 33 RQDTVRQQLAESATAADRLAEADQAHTKA--------------VEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERI 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665544444333332221 1134568899999999999999999999999988888
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhh
Q 009482 314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVE 354 (533)
Q Consensus 314 me~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vE 354 (533)
+++|...-+. |..+.--++-.++..-|-..-...|...+.
T Consensus 99 ~~~a~~~Ie~-ek~~a~~elr~ei~~lAv~~A~kil~~~l~ 138 (445)
T PRK13428 99 KVQGARQVQL-LRAQLTRQLRLELGHESVRQAGELVRNHVA 138 (445)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999876653 555566666666666665555555555443
No 53
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.24 E-value=1.9e+02 Score=29.37 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=100.5
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhh---
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESL--- 309 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~--- 309 (533)
|.+++++..|+-.+|=.+|+..-..+=..+| .++-.+...=...|.+-+.=|..||.--...+-..-.-.+.+
T Consensus 58 ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~----~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 58 DYLDTFALKLGTIDRIAQRIIKEEIEYLVEL----REYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6788999999999998888876554444433 456667777777888888888888765444443333222222
Q ss_pred ---cHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Q 009482 310 ---SSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEK 386 (533)
Q Consensus 310 ---sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~ 386 (533)
+.+||..+--|+- .++|++|...-++++|++-+-.+-.
T Consensus 134 yl~~Lke~~~Y~~slk---------------------------------------~vlK~RdqkQ~d~E~l~E~l~~rre 174 (240)
T cd07667 134 FLPVLREYILYSESMK---------------------------------------NVLKKRDQVQAEYEAKLEAVALRKE 174 (240)
T ss_pred HHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333322222 3566666666666666655422223
Q ss_pred hhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHH-HHHhc
Q 009482 387 EIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKE-LARVS 465 (533)
Q Consensus 387 EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe-~a~~s 465 (533)
.|...+.+|++++.++ .-.+. .-++|++.| +..|-..+|. |...+
T Consensus 175 ~~~kLe~~ie~~~~~v-------------------------e~f~~------~~~~E~~~F---e~~K~~e~k~~l~~~A 220 (240)
T cd07667 175 ERPKVPTDVEKCQDRV-------------------------ECFNA------DLKADMERW---QNNKRQDFRQLLMGMA 220 (240)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3333333333333333 11111 235677776 3344445554 34456
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009482 466 ADEAKEYWEVVELRRSLM 483 (533)
Q Consensus 466 ~~EAk~~qe~V~lRR~La 483 (533)
---..-|+.++..|.++.
T Consensus 221 d~~i~fy~~~~~~We~~l 238 (240)
T cd07667 221 DKNIQYYEKCLTAWESII 238 (240)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 667888999999999863
No 54
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=59.67 E-value=1.1e+02 Score=31.10 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=71.3
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHH----HHHHHHhh--hhhhhhhcchHHHHHHHHHHHhhhh
Q 009482 336 HLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQK----LLALVRDK--EKEIAENDSNIRAVEERISIVVSDF 409 (533)
Q Consensus 336 ~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~----LL~lVk~K--E~EIAeNds~IkaV~erIs~VVS~F 409 (533)
.++..|.-.+-.-|+.-+++|.++---..|+=|..++++.- .+.+=|-| |.+.|+++.++.... ..|
T Consensus 83 ~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sR-------r~F 155 (215)
T cd07632 83 ELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSR-------RKQ 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHH-------HHH
Confidence 67788877888889999999999888888888888887654 34455556 566666665555443 336
Q ss_pred hhhhhhhhhchhhHHHH-------------HHhhhhhhHHhhhhHHHHhHhhhh
Q 009482 410 QEYQSSINAKYDSLQSI-------------ISQLNLESEAMSMKKKEIDKFLND 450 (533)
Q Consensus 410 ~e~QssId~k~~~Lqs~-------------lsq~dletEaL~lKkkeID~fls~ 450 (533)
|..=.+-=.++|.||+. .++.--=-.+-.+-.+..|.||+.
T Consensus 156 ~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~ 209 (215)
T cd07632 156 HLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSS 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555666666653 222222334555666777788764
No 55
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.66 E-value=2.8e+02 Score=30.69 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred hhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhh----hhhcccchHHHHHhcHHHHHH
Q 009482 417 NAKYDSLQSIISQLNLESEAMSMKKKEIDKFLND----EVDRGTKLKELARVSADEAKE 471 (533)
Q Consensus 417 d~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~----ee~~gakLRe~a~~s~~EAk~ 471 (533)
+.+...|.....++...-+.|.-+++++++.... ..+.-.+|-.+++.+.+|||.
T Consensus 93 ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~ 151 (514)
T TIGR03319 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKE 151 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4444444444444444444444444444444332 223445789999999999985
No 56
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.74 E-value=1e+02 Score=30.11 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=37.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHH
Q 009482 362 ILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSI 426 (533)
Q Consensus 362 ~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~ 426 (533)
.|..+-..|..|++.|-..++..++.++.....|..++.+|..+...=.+.-..+...++.|+.-
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555556666666666666666666665566666666666666553
No 57
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.58 E-value=63 Score=24.95 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhh
Q 009482 372 NELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432 (533)
Q Consensus 372 ~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dl 432 (533)
.+++.++.-.+.-+.+|.....+|..|.+.-..++..-+..-..|..+++.|+..-..+..
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCE 94 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777666666666566666666666666665555443
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.95 E-value=1.5e+02 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHhhhhHHHHhHhhhhhhhcccchHHHH
Q 009482 435 EAMSMKKKEIDKFLNDEVDRGTKLKELA 462 (533)
Q Consensus 435 EaL~lKkkeID~fls~ee~~gakLRe~a 462 (533)
+.+...+..++.|-..-+..-..++++-
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445544444444444444444
No 59
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.71 E-value=4.5e+02 Score=32.42 Aligned_cols=174 Identities=21% Similarity=0.258 Sum_probs=85.6
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+.-+.+.+.+-.++-.--....++|+.+..+-.+..+|.+.=..|=.-= +|++..-+..-.++++ +++
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rl-----------kdl~keik~~k~~~e~-~~~ 808 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRL-----------KDLEKEIKTAKQRAEE-SSK 808 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHH-----------HHHHHHHHHHHHHHHH-HHH
Confidence 3444455555555555555667889999999999999988766553322 2333333333333333 334
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHh-------hh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRD-------KE 385 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~-------KE 385 (533)
++++-.-.-+ .++||+| -+... +..+++.-+-+-+.-+.|..|+..|-+.|+. ..
T Consensus 809 ~~ek~~~e~e-----~l~lE~e--~l~~e-----------~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 809 ELEKRENEYE-----RLQLEHE--ELEKE-----------ISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHH-----HHHHHHH--HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 4444332222 2333332 11222 2233444444555555666666666555443 34
Q ss_pred hhhhhhcchHHHHHHHHHHHhhhhhhhh---hhhhhchhhHHHHHHhhhhhhHH
Q 009482 386 KEIAENDSNIRAVEERISIVVSDFQEYQ---SSINAKYDSLQSIISQLNLESEA 436 (533)
Q Consensus 386 ~EIAeNds~IkaV~erIs~VVS~F~e~Q---ssId~k~~~Lqs~lsq~dletEa 436 (533)
.+|.++.+.+....-+|+..+..-+-.+ +++..+...|--.++.+..+...
T Consensus 871 ~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 871 AELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence 4455555555555544444333322222 23344444444455555444443
No 60
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=57.69 E-value=87 Score=29.69 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYD 272 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~ 272 (533)
+|.++|.++|..+|+.|+.+-..+.+.+...--...+=+.
T Consensus 35 eR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 35 AKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999888888877665444444443
No 61
>PRK12705 hypothetical protein; Provisional
Probab=56.68 E-value=84 Score=34.89 Aligned_cols=87 Identities=20% Similarity=0.341 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhc
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDR 454 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~ 454 (533)
++.+.+=...|.|+.+-...++.-+.||..--. .++.|.+.|.....+++..-..|.-+++++++. .++.
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~-------~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~ 128 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQREEERLVQKEE-------QLDARAEKLDNLENQLEEREKALSARELELEEL---EKQL 128 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 344444444555555555555555555433211 368888888888888888888888888999888 5666
Q ss_pred ccchHHHHHhcHHHHHH
Q 009482 455 GTKLKELARVSADEAKE 471 (533)
Q Consensus 455 gakLRe~a~~s~~EAk~ 471 (533)
...|-++++.+.+|||.
T Consensus 129 ~~~Le~ia~lt~~eak~ 145 (508)
T PRK12705 129 DNELYRVAGLTPEQARK 145 (508)
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 67999999999999985
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.38 E-value=3.5e+02 Score=30.76 Aligned_cols=253 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhh----------hhhHhHHHHHHHhhhh----------------hhhhHHHHHHHhhhhcHHHHHHHHh
Q 009482 266 IDSKMYDVLVSQI----------AAEQDCASLLDHFSAD----------------ASNSADTFLKKAESLSSEEMEKWLA 319 (533)
Q Consensus 266 vD~kmq~vL~SqI----------aaEEE~A~lL~~Fakd----------------A~~~A~~~~k~A~~~sskEme~W~s 319 (533)
|...|.+.|-.-. .....-+.+|..|..+ +...+..+.......-..+...=..
T Consensus 249 l~~~l~e~lr~~~~~~~~~~~~~~s~~dl~~~l~~~~~~~~~k~s~f~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
T PF05667_consen 249 LQKRLAEQLRQAASASSDNHFRASSSDDLADVLHKFSGEAWDKGSRFTHSEKPQEAAPAAAVVPPKEKETEEDEQEEQEQ 328 (594)
T ss_pred HHHHHHHHHHHhhcccccccccccchhHHHHHHHhccccccccccccccccchhhhhhccccCCcccccchhhhHHHHHH
Q ss_pred hHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHH
Q 009482 320 STEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVE 399 (533)
Q Consensus 320 s~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~ 399 (533)
..+.|...=-++.-+..-+......+..++.. ++....++..-..+..--..=..+++.|.-+.|.-|+.....|.+..
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQ-LEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhh----HHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHH
Q 009482 400 ERISIVVSDFQEYQSSINAKYDSLQSIISQLNLES----EAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEV 475 (533)
Q Consensus 400 erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dlet----EaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~ 475 (533)
+|+..+...+.....-+..+|..|......-..++ +.+..-|.+|......-..+....+.+...-..--|.-.-.
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs 487 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS 487 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Q ss_pred HHHHH--HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009482 476 VELRR--SLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFT 526 (533)
Q Consensus 476 V~lRR--~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~~~ 526 (533)
-=.|| -..+.|-|-++|= .|++.|...||-++...-+-|.--|+
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI-------~KIl~DTr~lQkeiN~l~gkL~RtF~ 533 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEI-------EKILSDTRELQKEINSLTGKLDRTFT 533 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHH
No 63
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=56.12 E-value=1.7e+02 Score=27.23 Aligned_cols=107 Identities=7% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|.+.|..+++-++.....+.+++.. --.++.|+..++++--+.|....+.+..+|..-..+
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~--------------l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~ 114 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQK--------------LKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655555555443 335677777788888888888888888888887777
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVE 354 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vE 354 (533)
-++.|...-+. +..+.--++..+.+.-|-.-....|.+.+-
T Consensus 115 ~~~~A~~~I~~-ek~~a~~~l~~ei~~lA~~~a~kll~~~l~ 155 (173)
T PRK13453 115 MIETAQSEINS-QKERAIADINNQVSELSVLIASKVLRKEIS 155 (173)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHcC
Confidence 78887766543 445555566666666666666666666553
No 64
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=55.51 E-value=1.8e+02 Score=27.06 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=71.5
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|+++|..+++-+...-..+.+++... -.+..|+..+++.--++|....+.+..+|..-...
T Consensus 50 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L--------------~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~ 115 (174)
T PRK07352 50 ERREAILQALKEAEERLRQAAQALAEAQQKL--------------AQAQQEAERIRADAKARAEAIRAEIEKQAIEDMAR 115 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777766666555555544332 24567777788888888888888888888888888
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|...-+ .+.++.--++..++++-|-..-...|.+.+
T Consensus 116 ~~~~a~~~i~-~e~~~a~~~l~~qi~~la~~~A~kil~~~l 155 (174)
T PRK07352 116 LKQTAAADLS-AEQERVIAQLRREAAELAIAKAESQLPGRL 155 (174)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 8888887644 455666666777666666555555555555
No 65
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=50.68 E-value=2.1e+02 Score=26.57 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=73.7
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|.++|..+++-+...-..+.+++. .--.+..|+...++.--++|....+.+..+|..-..+
T Consensus 47 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~--------------~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~ 112 (173)
T PRK13460 47 ERASGVQNDINKASELRLEAEALLKDYEA--------------RLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKA 112 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777666655555554433 3345678888888888888888888888888888888
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|...-+. +..+.--++..+++.-|-......|.+.+
T Consensus 113 ~~~~a~~~ie~-e~~~a~~el~~ei~~lA~~~a~kil~~~l 152 (173)
T PRK13460 113 QKDQAVKEIEL-AKGKALSQLQNQIVEMTITIASKVLEKQL 152 (173)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 88888876653 45555566666666666666666666655
No 66
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.79 E-value=2.5e+02 Score=27.36 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=23.0
Q ss_pred hhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhh
Q 009482 297 NSADTFLKKAESLSSEEMEKWLASTEALEGRK 328 (533)
Q Consensus 297 ~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK 328 (533)
+-|+.|.+---..+....+.|..+...||.--
T Consensus 54 ~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~G 85 (190)
T PF05266_consen 54 NLAEKVKKLQIDDSRSSFESLMKTLSELEEHG 85 (190)
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHHHHHHcC
Confidence 44566666556667888899999888888643
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.24 E-value=3.1e+02 Score=28.05 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=71.6
Q ss_pred HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhh------hhHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 009482 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVED------DLREKEILYKKKDILTNELQKLLALVRDKE 385 (533)
Q Consensus 312 kEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEd------DkrEKe~l~kkkd~L~~EL~~LL~lVk~KE 385 (533)
+.++....-+|.|+.....++.|.+-+++=......-+ ..|.+ -.+|.+++..+...|..||.+|...+.-++
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555667777777777777666665555555444 33333 345677777888888888888888777777
Q ss_pred hhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHH
Q 009482 386 KEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKE 443 (533)
Q Consensus 386 ~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkke 443 (533)
.+| ..+.++|.+....|.+...+++..+. .++.+-..++.++.+
T Consensus 124 ~~i-------~~l~~~~~~~e~~~~e~~~~~e~e~~-------~i~e~~~~~~~~~~~ 167 (239)
T COG1579 124 KEI-------EDLKERLERLEKNLAEAEARLEEEVA-------EIREEGQELSSKREE 167 (239)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 665 45556666666666666666655443 344444444444433
No 68
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.40 E-value=1.8e+02 Score=29.18 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=26.3
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 009482 348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIA 389 (533)
Q Consensus 348 sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIA 389 (533)
..++.|++.++|++-|...+.-.++||...=.=.-.-|..|.
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888887777777777776554433333344443
No 69
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.11 E-value=4.2e+02 Score=32.49 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHh
Q 009482 366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEID 445 (533)
Q Consensus 366 kkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID 445 (533)
++..|.+|-.++-.-.+.+-+++.+++.+++++.++ |.++.--+..+++.+-+-.-+-+.--..+.-.||+|+
T Consensus 277 ~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek-------~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 277 KKEELESEKKETRSKISQKQRELNEALAKVQEKFEK-------LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMIL 349 (1072)
T ss_pred hhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555444444433 3333344444445554444444444444444444444
No 70
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=43.39 E-value=27 Score=38.83 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHH
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQS 251 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ 251 (533)
..|+.+.++|++..+||+|.++-|.|.++++-...
T Consensus 205 ~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~~~ 239 (598)
T PRK00558 205 KELEEKMEEASENLEFERAARYRDQIQALRRVQEK 239 (598)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999876443
No 71
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.18 E-value=1.6e+02 Score=30.34 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhHhhhh
Q 009482 310 SSEEMEKWLASTEALE 325 (533)
Q Consensus 310 sskEme~W~ss~E~LE 325 (533)
..+|.+.|......|+
T Consensus 21 ~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 21 AEKERDTYQEFLKKLE 36 (314)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555554444
No 72
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=41.85 E-value=72 Score=35.97 Aligned_cols=95 Identities=23% Similarity=0.248 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHH--H
Q 009482 175 SVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQS--L 252 (533)
Q Consensus 175 sqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~--l 252 (533)
.+|-++++.-.|.| |+--|=+++..-..|.-|+.-..-...+||++--||.+-|||++|.-.-|.+-++.-+-.. =
T Consensus 170 aaiIgaidenKqeA--VakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiealRaeilaqld 247 (666)
T KOG4825|consen 170 AAIIGAIDENKQEA--VAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEALRAEILAQLD 247 (666)
T ss_pred HHHHHHHHhhHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888877765 6677888888888888888888888899999999999999999998888877776554322 2
Q ss_pred HHHHHhhhhhhchhhhhHH
Q 009482 253 LIALRDAEAHCDAIDSKMY 271 (533)
Q Consensus 253 l~aLRdAE~~~DsvD~kmq 271 (533)
+-.|-||+.+.--.|+-++
T Consensus 248 lhlLeDaelhlrPfdlpad 266 (666)
T KOG4825|consen 248 LHLLEDAELHLRPFDLPAD 266 (666)
T ss_pred hhhhhhhHhhcCcccCCCC
Confidence 3456777777665555444
No 73
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.81 E-value=3.6e+02 Score=28.19 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=36.4
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHH
Q 009482 357 LREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERI 402 (533)
Q Consensus 357 krEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erI 402 (533)
+.||+..-++=.....||+.+++-++.+|+++++.-.+|.+.-.|.
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl 237 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRL 237 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666778999999999999999999888887777664
No 74
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.72 E-value=3.2e+02 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=11.2
Q ss_pred hhhhhhhhcchHHHHHHHHHHHhhhhhh
Q 009482 384 KEKEIAENDSNIRAVEERISIVVSDFQE 411 (533)
Q Consensus 384 KE~EIAeNds~IkaV~erIs~VVS~F~e 411 (533)
...+|.+...++..+..+|..+-.....
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~ 88 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQ 88 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 75
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=40.47 E-value=55 Score=26.00 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhh
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSS 415 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~Qss 415 (533)
++|..++...|.++++-|.+|++.+.=|.++..+--|..-+
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~P~ 43 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQTPS 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 57888889999999999999999999999988776554443
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.69 E-value=6.3e+02 Score=28.93 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=29.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhh
Q 009482 357 LREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQS 414 (533)
Q Consensus 357 krEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~Qs 414 (533)
++|++.|-.+=+..+.+-+.|-.|++.+|.-|.+.--.++..+++..++.+-...+||
T Consensus 93 ~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs 150 (617)
T PF15070_consen 93 RKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQS 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344555544444444555555555555555555555555555555444444444443
No 77
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.35 E-value=3.9e+02 Score=26.34 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhh--------hhhhHHhhh
Q 009482 368 DILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQL--------NLESEAMSM 439 (533)
Q Consensus 368 d~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~--------dletEaL~l 439 (533)
+.+.+++..|..-+..-.....-+-.....|...+.....+=......|..-...++.-+.++ .+..+.|..
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~ 127 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQR 127 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Q ss_pred hHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009482 440 KKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARA 519 (533)
Q Consensus 440 KkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~ 519 (533)
+-+|+...|..=..++ +...-..+..|-+.++..+..=++........-+ ..-+.+..++-.+.-++.++|.
T Consensus 128 ~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~------~l~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENE------SLAEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 009482 520 SLQV 523 (533)
Q Consensus 520 SLQE 523 (533)
.|++
T Consensus 200 ~l~e 203 (264)
T PF06008_consen 200 LLNE 203 (264)
T ss_pred HHHH
No 78
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.07 E-value=7.8e+02 Score=29.82 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=10.6
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 009482 495 KLAKTEEKLSAEVQTLQQEA 514 (533)
Q Consensus 495 ~L~k~EEel~~dvQ~LrQqv 514 (533)
.+.+..+.+...+..+.+.+
T Consensus 910 ~~~~l~~~l~~~~~~f~~~l 929 (1201)
T PF12128_consen 910 RRKRLREELKKAVERFKGVL 929 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.97 E-value=8.4e+02 Score=30.14 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred hhhhhhHHHHHHHHHhhhhhchHH-HHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhh-hhHhHHHHH
Q 009482 211 LASLRHSQLEKQLDEACEAEDFEA-AQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIA-AEQDCASLL 288 (533)
Q Consensus 211 sas~khk~LE~eLEeACEaEDFe~-AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIa-aEEE~A~lL 288 (533)
.+|+|..||..=++..-= +|+- +-=+||.-| -.||..+..++-+= +=|+-.+--+|. .=.+|++.|
T Consensus 156 vVStKk~dl~~vv~~f~I--~veNP~~~lsQD~a------R~FL~~~~p~dkYk----lfmkaT~L~qi~~~~~~~~~~~ 223 (1074)
T KOG0250|consen 156 VVSTKKEDLDTVVDHFNI--QVENPMFVLSQDAA------RSFLANSNPKDKYK----LFMKATQLEQITESYSEIMESL 223 (1074)
T ss_pred cccccHHHHHHHHHHhCc--CCCCcchhhcHHHH------HHHHhcCChHHHHH----HHHHHhHHHHHHHHHHHHHHHH
Confidence 467777777766654311 1110 111233222 13666666655321 112222222221 113456666
Q ss_pred HHhhhhhhhhHHHHHH
Q 009482 289 DHFSADASNSADTFLK 304 (533)
Q Consensus 289 ~~FakdA~~~A~~~~k 304 (533)
+|+...-..++..+..
T Consensus 224 ~~~~~~i~~~~e~i~~ 239 (1074)
T KOG0250|consen 224 DHAKELIDLKEEEIKN 239 (1074)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 6666555555554443
No 80
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=38.51 E-value=3.3e+02 Score=33.19 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhh----------hchhhHHHHH
Q 009482 358 REKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSIN----------AKYDSLQSII 427 (533)
Q Consensus 358 rEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId----------~k~~~Lqs~l 427 (533)
|||.+.+--.+..+ +.|.|--.+.-+|++.++.|.++.+.|...+.... .+...+++.|
T Consensus 424 ReKnGvyisee~y~-----------~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 424 REKNGVYISEERYT-----------QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HhhCceEechHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 009482 428 SQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEV 507 (533)
Q Consensus 428 sq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dv 507 (533)
.....+-+.+...=.++-.-|..++.-=..+...-.-..+.|...|..++.=..-+++..+-=.-|-++-.-=.+...++
T Consensus 493 ~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~ 572 (1041)
T KOG0243|consen 493 QNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDF 572 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHH
Q ss_pred HH
Q 009482 508 QT 509 (533)
Q Consensus 508 Q~ 509 (533)
++
T Consensus 573 ~~ 574 (1041)
T KOG0243|consen 573 QS 574 (1041)
T ss_pred hh
No 81
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.38 E-value=4.3e+02 Score=26.34 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=55.5
Q ss_pred cHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 009482 310 SSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIA 389 (533)
Q Consensus 310 sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIA 389 (533)
+..+...|....+.|..+-.+|. ..-.+++++|-+++++..+.+...-..-.-+..|...+++=+.--|.-.+
T Consensus 21 ~E~e~~~l~~k~~e~~~~~~~m~-------~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKENQEMR-------KIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 33678899999999888777764 23346788999999987777665544444444454444444444343333
Q ss_pred hhcchHHHHHHHHHHHhhhhhhh
Q 009482 390 ENDSNIRAVEERISIVVSDFQEY 412 (533)
Q Consensus 390 eNds~IkaV~erIs~VVS~F~e~ 412 (533)
.+..=-+|.-.|++||+..
T Consensus 94 ----dl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 94 ----DLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred ----HHHHHHHHHHHHHHHHHHh
Confidence 2333334555555666553
No 82
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.76 E-value=7.4e+02 Score=28.84 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 009482 180 KLNRARELAASVSAARKDSIR 200 (533)
Q Consensus 180 KL~~~~q~AasvsaaRk~~~~ 200 (533)
.+..+....+.+...++....
T Consensus 233 e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 233 EIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444443
No 83
>PRK09039 hypothetical protein; Validated
Probab=36.75 E-value=5.2e+02 Score=27.07 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=51.9
Q ss_pred CchhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHhhhhh--------hhhhhhhHHHHHHHHH
Q 009482 164 NDPHQRFEYLRSVISDK----------LNRARELAASVSAARKDSIRRRRKAADDV--------ELASLRHSQLEKQLDE 225 (533)
Q Consensus 164 ~~~~erl~~lrsqIs~K----------L~~~~q~AasvsaaRk~~~~rRRKaaEd~--------~sas~khk~LE~eLEe 225 (533)
.+.++.|+.|.+||+.= ...+++..+.+.+....+-.+|- -.+.. +.+-.+-..|+.+|.+
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-~Le~~~~~~~~~~~~~~~~~~~l~~~L~~ 127 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAEGRAGELAQELDS 127 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcchHHHHHHHHHHHHHH
Confidence 36677799999999871 13445555555554443333332 22221 1111122222233222
Q ss_pred --hhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhh
Q 009482 226 --ACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSK 269 (533)
Q Consensus 226 --ACEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~k 269 (533)
+-=++..-...++...++++++....|-.+|..++........+
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233444556666667777776666666666666555333333
No 84
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.46 E-value=4.2e+02 Score=28.08 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 009482 501 EKLSAEVQTLQQEASAARASLQVN 524 (533)
Q Consensus 501 Eel~~dvQ~LrQqvS~AR~SLQE~ 524 (533)
..+.+++..++.++..++..+.++
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666666655554
No 85
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=36.43 E-value=3.4e+02 Score=24.83 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=75.5
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-++|.+.|..+++-+...-..+.+++... -.+..|+..++++--++|..-.+.+..+|..=...
T Consensus 39 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l--------------~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~ 104 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQLANAKRDYEAEL--------------AKARQEAAKIVAQAQERARAQEAEIIAQARREAEK 104 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888877777776666665555432 23567788888888888888888888888888888
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVED 355 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEd 355 (533)
.++.|...-+. |..+..-++.+++++-|-......|.+.+.+
T Consensus 105 ~~~~a~~~I~~-ek~~a~~~L~~~i~~la~~~a~kil~~~l~~ 146 (164)
T PRK14473 105 IKEEARAQAEQ-ERQRMLSELKSQIADLVTLTASRVLGAELQA 146 (164)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCH
Confidence 88888776553 4566666777777776666666666665543
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.84 E-value=9.5e+02 Score=29.86 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=99.9
Q ss_pred hhhhHHHHHhHHHHHHhhhhhhhhh---hhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHH
Q 009482 327 RKIELEIESHLVNEARAVLNNSIEH---SVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS 403 (533)
Q Consensus 327 kK~EleiEs~~v~eAr~~Ln~sIeh---~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs 403 (533)
+--||..+..-+..+..++++.|-. ++..-+-=-...-+|..-+...++++=..++.||++.+....-.+.+.+.-+
T Consensus 288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~ 367 (1174)
T KOG0933|consen 288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQ 367 (1174)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3345556666666666666554421 1111111111222344555666777777888888888876655554444333
Q ss_pred HHhhhhh---h--------------hhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcH
Q 009482 404 IVVSDFQ---E--------------YQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSA 466 (533)
Q Consensus 404 ~VVS~F~---e--------------~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~ 466 (533)
..-..|. + -...++.++-.-...++++.++-+...+|=.-.-+=|...+..-+..-.=...-.
T Consensus 368 ~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~ 447 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDI 447 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHH
Confidence 2222222 1 2334455555666666677776666666544433333333332222222222234
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009482 467 DEAKEYWEVVE-LRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASL 521 (533)
Q Consensus 467 ~EAk~~qe~V~-lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SL 521 (533)
.+...||.-|+ +|+.|-+.=.+...+. .|-+...+|..++..|-..+..--++|
T Consensus 448 ~~ld~~q~eve~l~~~l~~l~~~~~~~e-~l~q~~~~l~~~~~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 448 EELDALQNEVEKLKKRLQSLGYKIGQEE-ALKQRRAKLHEDIGRLKDELDRLLARL 502 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777887775 5555544333322111 244556677888888877776655554
No 87
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.63 E-value=4e+02 Score=25.45 Aligned_cols=72 Identities=13% Similarity=0.034 Sum_probs=45.7
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhh
Q 009482 234 AAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESL 309 (533)
Q Consensus 234 ~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ 309 (533)
-.+.+...|..++|--.++..-.++--.+|-- +-.++.-=...|++-+..|.+|+.-....+....+.+..+
T Consensus 22 yi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~e----fg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~ 93 (200)
T cd07624 22 YLTLFGEKLGTIERISQRIHKERIEYFDELKE----YSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDH 93 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887766665555533 3334444456677777778887766655555555555444
No 88
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.15 E-value=9.7e+02 Score=29.78 Aligned_cols=225 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhh--
Q 009482 292 SADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDI-- 369 (533)
Q Consensus 292 akdA~~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~-- 369 (533)
+|..-+-|+.-.....+.....-+...--+=-+|...=.+.-|.--.+.....+...+ |++|+++--+|++.
T Consensus 193 aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~------d~~e~ei~~~k~e~~k 266 (1141)
T KOG0018|consen 193 AKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERM------DKKEREIRVRKKERGK 266 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhh------hHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhh---chhhHHHHHHhhhhhhHHhhhhHHHHhH
Q 009482 370 LTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINA---KYDSLQSIISQLNLESEAMSMKKKEIDK 446 (533)
Q Consensus 370 L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~---k~~~Lqs~lsq~dletEaL~lKkkeID~ 446 (533)
...|+.++=..++.||..+++ -.+.=.|.+.++..-.+|.+.+-+|.. +|+.+++-+.++..+-.++.-+|++..+
T Consensus 267 i~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fek 345 (1141)
T KOG0018|consen 267 IRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEK 345 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhh-cccch----------------------------------------HHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 009482 447 FLNDEVD-RGTKL----------------------------------------KELARVSADEAKEYWEVVELRRSLMSS 485 (533)
Q Consensus 447 fls~ee~-~gakL----------------------------------------Re~a~~s~~EAk~~qe~V~lRR~Lass 485 (533)
=|-...+ +|.+| .++.+...-|++.-|.-+.+ ..+..-
T Consensus 346 ei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sv-er~~~~ 424 (1141)
T KOG0018|consen 346 EIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESV-ERLDKR 424 (1141)
T ss_pred HHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009482 486 ILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVN 524 (533)
Q Consensus 486 IlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~ 524 (533)
+-+-..-=-.+....+++.+|.+.|+-.++.+..--+++
T Consensus 425 ~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~ 463 (1141)
T KOG0018|consen 425 RNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYEL 463 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHH
No 89
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=34.99 E-value=3.8e+02 Score=25.06 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=7.1
Q ss_pred HhhhhhhhhhhhhHHHHH
Q 009482 204 KAADDVELASLRHSQLEK 221 (533)
Q Consensus 204 KaaEd~~sas~khk~LE~ 221 (533)
+...++..|...+.+-+.
T Consensus 62 ~I~~~l~~Ae~~~~eA~~ 79 (184)
T PRK13455 62 GIRSELEEARALREEAQT 79 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444333333333
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.56 E-value=3.7e+02 Score=24.77 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred chhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHH
Q 009482 419 KYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYW 473 (533)
Q Consensus 419 k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~q 473 (533)
++...+..+++++.+...+..+..+....+..-+.--..+++.-+.-.++-..++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 136 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLD 136 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444455555555555444444444444433333333333333333333333
No 91
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=34.56 E-value=46 Score=36.81 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHH
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAET 247 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EK 247 (533)
-..|+.+.+.|.++.+||+|-++-|.|.+++.
T Consensus 194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 194 IEKLEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999985
No 92
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.93 E-value=4.3e+02 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHhHHHHHHhhhhhhhhhhhh
Q 009482 333 IESHLVNEARAVLNNSIEHSVE 354 (533)
Q Consensus 333 iEs~~v~eAr~~Ln~sIeh~vE 354 (533)
.+..-+..++..|..-|+..++
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666555
No 93
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.00 E-value=7.3e+02 Score=27.66 Aligned_cols=168 Identities=28% Similarity=0.282 Sum_probs=97.9
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHH-------HhhhhhhchhhhhHHHHHHH
Q 009482 204 KAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIAL-------RDAEAHCDAIDSKMYDVLVS 276 (533)
Q Consensus 204 KaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~aL-------RdAE~~~DsvD~kmq~vL~S 276 (533)
.++--+.-+-.+|..|=+.||+--|+---++|+- -|-.+-+||++.+|-.-+ |.||-.-| -|++
T Consensus 104 ~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeG-DDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~--------Kl~~ 174 (561)
T KOG1103|consen 104 NAASLLAAAEKKHRKLIKDLEADREAHAQDAAEG-DDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKD--------KLEM 174 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 3444444455566666666665555544444442 355677889888886544 34443333 3333
Q ss_pred hhhhh----HhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhh--hhhhh
Q 009482 277 QIAAE----QDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVL--NNSIE 350 (533)
Q Consensus 277 qIaaE----EE~A~lL~~FakdA~~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~L--n~sIe 350 (533)
|+--| +.-...|=.-.|.|++.|-..-.+|++++.|- +. +--.+||.+-+ +..+-.-|| +.-+|
T Consensus 175 qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lkl-ek-----dksr~~k~eee----~aaERerglqteaqve 244 (561)
T KOG1103|consen 175 QLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKL-EK-----DKSRTKKGEEE----AAAERERGLQTEAQVE 244 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh-cc-----CccccCCChHH----HHHHHhhccchHHHHH
Confidence 33322 34455566667888888888888888887641 11 11124444322 222322222 33456
Q ss_pred hhhhhhhHHHHHHh-------hhhhhHHHHHHHHHHHHHhhhhhhhh
Q 009482 351 HSVEDDLREKEILY-------KKKDILTNELQKLLALVRDKEKEIAE 390 (533)
Q Consensus 351 h~vEdDkrEKe~l~-------kkkd~L~~EL~~LL~lVk~KE~EIAe 390 (533)
.+|++-+.|.+.|. |+-.+|.+|.+-|-+.||+-|+-..-
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 66666666666664 45567889999999999999986543
No 94
>PRK07883 hypothetical protein; Validated
Probab=32.86 E-value=51 Score=36.37 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHH
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQ 250 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~ 250 (533)
-..|+.+.+.|.++.|||+|-++-|.+.++++=..
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~ 442 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDRLAALLRALA 442 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999986443
No 95
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.84 E-value=2.5e+02 Score=30.28 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=50.6
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhc
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEND 392 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNd 392 (533)
+|+.+......++.++-=++-...|+...+...-+.|.+.+......-.-+.+--+.+..++.+|..-.+.-+.+|.+.+
T Consensus 79 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
T TIGR02231 79 QIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELE 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333333333333444444433333333322111122233455556667777777777777788888888
Q ss_pred chHHHHHHHHHHHhh
Q 009482 393 SNIRAVEERISIVVS 407 (533)
Q Consensus 393 s~IkaV~erIs~VVS 407 (533)
.+|..++.+++.+-.
T Consensus 159 ~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 159 KQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHhhcc
Confidence 888888877766554
No 96
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.66 E-value=5.4e+02 Score=25.77 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 009482 504 SAEVQTLQQEASAARASLQV 523 (533)
Q Consensus 504 ~~dvQ~LrQqvS~AR~SLQE 523 (533)
..++..+++++..++..|..
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666555544
No 97
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=31.09 E-value=1.1e+02 Score=28.39 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhh
Q 009482 392 DSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLND 450 (533)
Q Consensus 392 ds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ 450 (533)
.++||+|+..++.|...|.+-|. +|++..+.+++|+.-+..|..-..=+++.+.+
T Consensus 55 ~~riKevd~~~~~l~~~~~erqk----~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 55 AKRIKEVDQEIAKLLQQMVERQK----RFAKFAEQLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888775 44556666666766666666555544444433
No 98
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.08 E-value=5.6e+02 Score=29.63 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=14.1
Q ss_pred hhhhhhhhhhhchhhHHHHHHhhhhhh
Q 009482 408 DFQEYQSSINAKYDSLQSIISQLNLES 434 (533)
Q Consensus 408 ~F~e~QssId~k~~~Lqs~lsq~dlet 434 (533)
-..+..+.+..+++.||..+..+....
T Consensus 231 ~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 231 PLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666655544443
No 99
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=30.88 E-value=3.5e+02 Score=27.32 Aligned_cols=87 Identities=16% Similarity=0.249 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 009482 170 FEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (533)
Q Consensus 170 l~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek 249 (533)
|..+=...-.|....+.+.+.-.......... ..++.+.....+-..|-.+.|++-+.|+.|.|+.+...+..+..+|
T Consensus 88 L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~--~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek 165 (254)
T PF03194_consen 88 LQRLIRDCDRRIERAKERLEQTQEEQAKEADE--EKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEK 165 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 33444445567777766665433222111111 0166777778888999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 009482 250 QSLLIALRD 258 (533)
Q Consensus 250 ~~ll~aLRd 258 (533)
..+...+..
T Consensus 166 ~~le~~~~~ 174 (254)
T PF03194_consen 166 EELEKELEE 174 (254)
T ss_pred HHHHhhhhh
Confidence 998886433
No 100
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=30.56 E-value=17 Score=40.63 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 009482 192 SAARKDSIRRRRKAADDVELASLRHSQLEKQLDE 225 (533)
Q Consensus 192 saaRk~~~~rRRKaaEd~~sas~khk~LE~eLEe 225 (533)
-..++.+..++-.+.+.+..+-..+..++..||.
T Consensus 113 e~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~ 146 (722)
T PF05557_consen 113 EARLKQLEEREEELEEELEEAEEELEQLKRKLEE 146 (722)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666666666644
No 101
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=30.46 E-value=5.4e+02 Score=25.39 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHH
Q 009482 398 VEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEA 436 (533)
Q Consensus 398 V~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEa 436 (533)
++.+...-+..|...=.+++..+..++..+.+.-.+-+.
T Consensus 249 le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 249 LEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444443333333333
No 102
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=30.01 E-value=60 Score=36.31 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
..|+.+.+.|+++.+||+|-++-|.|.++++=
T Consensus 202 ~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~~ 233 (577)
T PRK14668 202 DPLRREMEAAAQAQEFERAANLRDRLEAVEAF 233 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999853
No 103
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=29.82 E-value=59 Score=37.47 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHH
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQS 251 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ 251 (533)
-..|+++.+.|+++.|||+|-++-|.|.+++.=.+.
T Consensus 203 ~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~~~k 238 (694)
T PRK14666 203 VDALRTEMEAASEALEFERAAVLRDQIRAVERTVER 238 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999998864433
No 104
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.07 E-value=4.9e+02 Score=24.46 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=12.9
Q ss_pred hhhhHHHHHhHHHHHHhhhhhhhh
Q 009482 327 RKIELEIESHLVNEARAVLNNSIE 350 (533)
Q Consensus 327 kK~EleiEs~~v~eAr~~Ln~sIe 350 (533)
.|-+++-..+....+=+.|..-|.
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566555555555554444
No 105
>smart00150 SPEC Spectrin repeats.
Probab=28.76 E-value=2.7e+02 Score=21.41 Aligned_cols=11 Identities=45% Similarity=1.075 Sum_probs=6.4
Q ss_pred HHHHHHHhhHh
Q 009482 312 EEMEKWLASTE 322 (533)
Q Consensus 312 kEme~W~ss~E 322 (533)
.++..|....+
T Consensus 8 ~~l~~Wl~~~e 18 (101)
T smart00150 8 DELEAWLSEKE 18 (101)
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.53 E-value=5.4e+02 Score=25.44 Aligned_cols=14 Identities=7% Similarity=0.401 Sum_probs=6.8
Q ss_pred HhhhhcHHHHHHHH
Q 009482 305 KAESLSSEEMEKWL 318 (533)
Q Consensus 305 ~A~~~sskEme~W~ 318 (533)
+-..+-...+-+||
T Consensus 161 ~~~~~~~~~~~~wf 174 (206)
T PRK10884 161 QLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555565
No 107
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=28.35 E-value=66 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHH
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAET 247 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EK 247 (533)
..|+.+.++|.++.|||+|-++-|.+.+++.
T Consensus 218 ~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~ 248 (621)
T PRK14671 218 RSLTEEMQRAAAELKFEEAAELKDQIESLKR 248 (621)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999884
No 108
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.04 E-value=4.4e+02 Score=23.98 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.5
Q ss_pred HHHHHhHHHHHHHHhHHH
Q 009482 234 AAQRISDLLAAAETHQQS 251 (533)
Q Consensus 234 ~AErISdsLAa~EKek~~ 251 (533)
|-++|.+.|..+++-+..
T Consensus 39 R~~~I~~~l~~A~~~~~e 56 (141)
T PRK08476 39 RNASIKNDLEKVKTNSSD 56 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 109
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.38 E-value=2.8e+02 Score=30.16 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=57.2
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHH
Q 009482 345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQ 424 (533)
Q Consensus 345 Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lq 424 (533)
+.-+|-|+|.++.|.+ .+.-++.+..+.+-+|.-|.||++--+.++++.++|-.= -+.+|..||+==...+
T Consensus 207 irasvisa~~eklR~r------~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq---~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 207 IRASVISAVREKLRRR------REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQ---LQSLQKNIDILKSKVR 277 (365)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHH
Confidence 5667778888887754 445567777778889999999999888888888887643 3456666666666666
Q ss_pred HHHHhhhh
Q 009482 425 SIISQLNL 432 (533)
Q Consensus 425 s~lsq~dl 432 (533)
+.|+++.-
T Consensus 278 eal~~~~n 285 (365)
T KOG2391|consen 278 EALEKAEN 285 (365)
T ss_pred HHHhhhcc
Confidence 66666544
No 110
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=27.24 E-value=2.9e+02 Score=26.98 Aligned_cols=52 Identities=27% Similarity=0.481 Sum_probs=38.4
Q ss_pred hhhhhhhhhchhhHHHHHHhhhhhhH----HhhhhHHHHhHhhhhhhhcccchHHHH
Q 009482 410 QEYQSSINAKYDSLQSIISQLNLESE----AMSMKKKEIDKFLNDEVDRGTKLKELA 462 (533)
Q Consensus 410 ~e~QssId~k~~~Lqs~lsq~dletE----aL~lKkkeID~fls~ee~~gakLRe~a 462 (533)
+-.-+|.|.|+..++..|...+.+-+ .|.--|+.||+||...+. .-..-+||
T Consensus 43 qsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi~~~K~-NpnY~~li 98 (157)
T PF04778_consen 43 QSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFINKNKN-NPNYAELI 98 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccC-CccHHHHH
Confidence 44557899999999999988876554 488889999999998843 33333333
No 111
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=27.20 E-value=71 Score=35.71 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EKek 249 (533)
..|+.+.+.|.++.+||+|-++-|.|.+++.=.
T Consensus 197 ~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~ 229 (574)
T TIGR00194 197 KELEQKMEKASENLEFEEAARIRDQIAAVRELN 229 (574)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999998533
No 112
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=27.09 E-value=72 Score=35.80 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EKek 249 (533)
..|+.+.+.|+++.+||.|-++-|-|.+++.=.
T Consensus 180 ~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~~ 212 (574)
T PRK14670 180 SQIEIKMKEAIQKEDFEAAIKLKETKRSLIEIS 212 (574)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999988643
No 113
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=26.85 E-value=73 Score=35.65 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
-..|+.+.++|+++.|||+|-++-|-|.+++.=
T Consensus 201 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~ 233 (567)
T PRK14667 201 LPELYDKIEEYSQKLMFEKAAVIRDQILALENL 233 (567)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999988753
No 114
>PRK10698 phage shock protein PspA; Provisional
Probab=26.81 E-value=6.3e+02 Score=24.94 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=12.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhh
Q 009482 362 ILYKKKDILTNELQKLLALVRDKE 385 (533)
Q Consensus 362 ~l~kkkd~L~~EL~~LL~lVk~KE 385 (533)
|+.+=++++..-+..+|..+-+=+
T Consensus 3 if~Rl~~ii~a~in~~ldkaEDP~ 26 (222)
T PRK10698 3 IFSRFADIVNANINALLEKAEDPQ 26 (222)
T ss_pred HHHHHHHHHHhHHHHHHHhhcCHH
Confidence 344445555555555555544443
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=26.15 E-value=76 Score=35.51 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 009482 214 LRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (533)
Q Consensus 214 ~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek 249 (533)
.-.+.|+.++.+|.+..+||.|.++-|-+.++++-.
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~ 648 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL 648 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999998743
No 116
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.10 E-value=6.2e+02 Score=24.63 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=73.8
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk 312 (533)
+|-+.|.++|..+++-+...-..+.+++...- .+..|+..++++-...|..-...+.++|..-..+
T Consensus 79 ~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~--------------~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ 144 (205)
T PRK06231 79 KRKELIEAEINQANELKQQAQQLLENAKQRHE--------------NALAQAKEIIDQANYEALQLKSELEKEANRQANL 144 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888777777766654332 3456777777777777777777777788877778
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
.+++|...-+. +.++...++..++++-|-..-+..|...+
T Consensus 145 ii~~A~~~Ie~-Ek~~a~~~Lk~ei~~lAv~iA~kiL~k~l 184 (205)
T PRK06231 145 IIFQARQEIEK-ERRELKEQLQKESVELAMLAAEELIKKKV 184 (205)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888776553 55666666777777666666666555555
No 117
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.01 E-value=9.4e+02 Score=26.73 Aligned_cols=326 Identities=17% Similarity=0.259 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHH---HHhhhhhchHHHHHHhHHHHHHHHhHHHHH
Q 009482 177 ISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQL---DEACEAEDFEAAQRISDLLAAAETHQQSLL 253 (533)
Q Consensus 177 Is~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eL---EeACEaEDFe~AErISdsLAa~EKek~~ll 253 (533)
|..+|..+.++--+=-+ ...-.+-|+-.+++. +..-.++|..| |+++..-.|-.|...- ..+-
T Consensus 42 v~~el~kvk~l~l~Gqt--~~~fe~w~~~w~~i~--~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i----------~~~~ 107 (560)
T PF06160_consen 42 VADELSKVKKLNLTGQT--EEKFEEWRQKWDEIV--TKQLPEIEEQLFEAEEYADKYRFKKAKQAI----------KEIE 107 (560)
T ss_pred HHHHHHHHHhccccHHH--HHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHhcccHHHHHHHH----------HHHH
Confidence 44455555554222111 222344445555543 33446777777 5555555565554433 3344
Q ss_pred HHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhh---hhhhhhHHHHHHHhhhh-------c--HHHHHHHHhhH
Q 009482 254 IALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFS---ADASNSADTFLKKAESL-------S--SEEMEKWLAST 321 (533)
Q Consensus 254 ~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~Fa---kdA~~~A~~~~k~A~~~-------s--skEme~W~ss~ 321 (533)
..|..++.+++.|-.+|.+.+.+.-.--++-..|.+.|. |...+|..+...-...| - -.+.+.|.++.
T Consensus 108 ~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 108 EQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567888999999999999999999888888888888775 44444443332222222 1 13566677776
Q ss_pred hhhhhhhhhHHHHHhH-------------HHHHHhhhhhhhhhhhhhhh--H------HHHHHhhhhhhHHHHHHHHHHH
Q 009482 322 EALEGRKIELEIESHL-------------VNEARAVLNNSIEHSVEDDL--R------EKEILYKKKDILTNELQKLLAL 380 (533)
Q Consensus 322 E~LE~kK~EleiEs~~-------------v~eAr~~Ln~sIeh~vEdDk--r------EKe~l~kkkd~L~~EL~~LL~l 380 (533)
.-++++.+=..|+.++ +.+....+-+-|+++-.-.+ . +..-+.+.=+.+.+.|..++.+
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6777777666665543 33333333333333222111 1 1112333344566666666666
Q ss_pred HHhhhhhhhhhcchHHHHHHHHHHHhhhhh---hhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccc
Q 009482 381 VRDKEKEIAENDSNIRAVEERISIVVSDFQ---EYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTK 457 (533)
Q Consensus 381 Vk~KE~EIAeNds~IkaV~erIs~VVS~F~---e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gak 457 (533)
+ ++-++.+....++.+.++|...-..|. ...-.+...++.+..-+.++......|..-=..|..--.+.......
T Consensus 268 L--~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~ 345 (560)
T PF06160_consen 268 L--KNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEI 345 (560)
T ss_pred H--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 6 444677777778888888877766664 34455666677777777777766666655544444444444444444
Q ss_pred hHHHHHhcHHHHHHHH--------------HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009482 458 LKELARVSADEAKEYW--------------EVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQV 523 (533)
Q Consensus 458 LRe~a~~s~~EAk~~q--------------e~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE 523 (533)
.|.+-.-...--+.|. ++.+..+.+...+- .+-+.-.++...++.||..-..||..|+.
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~-------~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~ 418 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE-------EIEEEQEEINESLQSLRKDEKEAREKLQK 418 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333222223333 22222222222211 12223345677888888888888888877
Q ss_pred hh
Q 009482 524 NF 525 (533)
Q Consensus 524 ~~ 525 (533)
+.
T Consensus 419 ~~ 420 (560)
T PF06160_consen 419 LK 420 (560)
T ss_pred HH
Confidence 54
No 118
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.00 E-value=5.2e+02 Score=25.28 Aligned_cols=73 Identities=22% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhh
Q 009482 233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAES 308 (533)
Q Consensus 233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~ 308 (533)
+|-++|++.|..+++-|......+.+.+...--...+-+.++. .+.+++....+.=-..+...++...++|+.
T Consensus 84 ~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~---~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~ 156 (204)
T PRK09174 84 TRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ---AAREAAKAKAEAERAAIEASLEKKLKEAEA 156 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 119
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.63 E-value=1.1e+02 Score=25.98 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSD 408 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~ 408 (533)
|++.+++...--.-+..|+..+..++.||..++..
T Consensus 29 Leesl~~ye~G~~L~k~c~~~L~~ae~kv~~l~~~ 63 (75)
T PRK14064 29 LEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777777778888999999999999888753
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.39 E-value=8e+02 Score=25.68 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=41.8
Q ss_pred hhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Q 009482 322 EALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEI 388 (533)
Q Consensus 322 E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EI 388 (533)
--|+.|++=|+-=+.++..-+.+|...++++..|+ ..|.++-..+..-+.+|.+....-..|+
T Consensus 126 aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~----~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 188 (312)
T smart00787 126 ARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDY----KLLMKELELLNSIKPKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888899889998888888888888776654 4466666555554444444443333333
No 121
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.37 E-value=4.4e+02 Score=24.61 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=45.7
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH
Q 009482 336 HLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIV 405 (533)
Q Consensus 336 ~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~V 405 (533)
+=+.+|...+...++|.-+-=..=|.-|..|=|.|..-|++..++.++-..+..+.-..+..+...|..|
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456777777777887776666666667777777777777777776666666655555555544444443
No 122
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.84 E-value=6.4e+02 Score=24.42 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHH-------hHHH
Q 009482 170 FEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRI-------SDLL 242 (533)
Q Consensus 170 l~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErI-------SdsL 242 (533)
++.+=..|...|..+++..+.+-+.++.+-+. +.-+...+.+++.+-+-|..+|+=+.|... ...+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~-------~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERR-------VSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 56666667778888888888887777766554 444556788999999999999999988877 5555
Q ss_pred HHHHHhHHHHHHHHHhhhhhhchhhhhHHHH
Q 009482 243 AAAETHQQSLLIALRDAEAHCDAIDSKMYDV 273 (533)
Q Consensus 243 Aa~EKek~~ll~aLRdAE~~~DsvD~kmq~v 273 (533)
..++...+.+-..+......+..+-.+++++
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666665555555555555555555554
No 123
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.43 E-value=3e+02 Score=26.90 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=11.4
Q ss_pred hhhhhhcchHHHHHHHHHHHhhhhh
Q 009482 386 KEIAENDSNIRAVEERISIVVSDFQ 410 (533)
Q Consensus 386 ~EIAeNds~IkaV~erIs~VVS~F~ 410 (533)
+||....+.+..+++.|.++-..|+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 124
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.41 E-value=1.5e+03 Score=28.39 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHH------------------HHHhH
Q 009482 179 DKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAA------------------QRISD 240 (533)
Q Consensus 179 ~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~A------------------ErISd 240 (533)
++|..+.+.-.+..-.=.+.++.--++-++.......-++||..|.-.-+ |-+.+ .-+.|
T Consensus 237 ~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~--ekeq~~a~~t~~~k~kt~lel~~kdlq~ 314 (1200)
T KOG0964|consen 237 GELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE--EKEQLKARETKISKKKTKLELKIKDLQD 314 (1200)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 34444444333333333445555555566666666666666666654443 22211 12344
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHH---hhhhcHHHHHHH
Q 009482 241 LLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKK---AESLSSEEMEKW 317 (533)
Q Consensus 241 sLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~---A~~~sskEme~W 317 (533)
.+..-++.+...+..|..-+...--.--||-.++-..=+.=+|.+-+-...+..-...-+...|+ ++..|-+|=+.|
T Consensus 315 ~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkw 394 (1200)
T KOG0964|consen 315 QITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKW 394 (1200)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHH
Confidence 44555555555555555444333333333333322222222222222223333323233333333 345555678888
Q ss_pred HhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHH
Q 009482 318 LASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRA 397 (533)
Q Consensus 318 ~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~Ika 397 (533)
.-+. |+ .|++ .|-+-+.=..+|.+.-+.+..+|.+.|.-.+.-+..|.++-.++..
T Consensus 395 ir~e-----------i~---------~l~~----~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~ 450 (1200)
T KOG0964|consen 395 IRSE-----------IE---------KLKR----GINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEE 450 (1200)
T ss_pred HHHH-----------HH---------HHHH----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHH
Confidence 6542 21 1222 2233333345666666777777777777777666666666666555
Q ss_pred HHHHHHH
Q 009482 398 VEERISI 404 (533)
Q Consensus 398 V~erIs~ 404 (533)
....++.
T Consensus 451 ~~~~~~~ 457 (1200)
T KOG0964|consen 451 FDAENTE 457 (1200)
T ss_pred HHHHHHH
Confidence 4444433
No 125
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=24.20 E-value=86 Score=36.25 Aligned_cols=36 Identities=39% Similarity=0.560 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHH--hHHHH
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAET--HQQSL 252 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EK--ek~~l 252 (533)
..|+.+.+.|.++.|||+|-++-|-|.+++. +||..
T Consensus 208 ~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~~~~kq~v 245 (691)
T PRK14672 208 ARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLV 245 (691)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCee
Confidence 5689999999999999999999999999984 45544
No 126
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.91 E-value=6.3e+02 Score=29.34 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=43.8
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhH
Q 009482 357 LREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSL 423 (533)
Q Consensus 357 krEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~L 423 (533)
.+=++-+.++-..|..+.++-|.-+..-+.++.....+-+...+||..+-. .|..|..+++.|
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d----~Qe~L~~R~~~v 619 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD----KQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 345667788888888888888887777777777766666666666666544 466666655554
No 127
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=23.51 E-value=1.8e+03 Score=29.09 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=111.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhh-hhhh----chhhHH---------
Q 009482 359 EKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQS-SINA----KYDSLQ--------- 424 (533)
Q Consensus 359 EKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~Qs-sId~----k~~~Lq--------- 424 (533)
.-.-+...-++++.++..++..|..++.+|+..-..+.....+|.-+-.+|+.+++ +++. ..+.|.
T Consensus 838 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l 917 (1822)
T KOG4674|consen 838 QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDL 917 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHH
Confidence 33456677899999999999999999999999999999999999999999999997 2222 222222
Q ss_pred -----HHHHhh-------hhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 009482 425 -----SIISQL-------NLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADE-AKEYWEVVELRRSLMSSILKSRE 491 (533)
Q Consensus 425 -----s~lsq~-------dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~E-Ak~~qe~V~lRR~LassIlKSrE 491 (533)
.++++| -.-.++|-.-+.+.|+|....+.+-..+..-+.-...+ ...--++-.++--++.++-..+-
T Consensus 918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~ 997 (1822)
T KOG4674|consen 918 KEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKED 997 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 222222 23345666777888888876666666665555555444 44444555566666666554444
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009482 492 DKVKLAKTEEKLSAEVQTLQQEASAARASLQV 523 (533)
Q Consensus 492 dk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE 523 (533)
....+.+.=.-+..+++-++...|.|.-.+..
T Consensus 998 ~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~ 1029 (1822)
T KOG4674|consen 998 KLLDLSREISSLQNELKSLLKAASQANEQIED 1029 (1822)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666777777777777665543
No 128
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.89 E-value=1.5e+03 Score=28.08 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHH----hHhhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEI----DKFLN 449 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeI----D~fls 449 (533)
|++|-.-.+.++.+|++.-+.....++.|-..-..=.+.-..++...-+||..+++++..-+.|...-.++ |.++-
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~H 815 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRH 815 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Confidence 44444444555555555554444444444444444444444444555555555555555555554433333 33333
Q ss_pred hhhhcccchHHHHHhcHHHHHHH--HHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009482 450 DEVDRGTKLKELARVSADEAKEY--WEVVELRRSLMSSILKSR-EDKVKLAKTEEKLSAEVQTLQQEASAARASLQV 523 (533)
Q Consensus 450 ~ee~~gakLRe~a~~s~~EAk~~--qe~V~lRR~LassIlKSr-Edk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE 523 (533)
-+.-.-.+|-++-.+ |++.+ .+.+..--.=+.++--+. -.=+.|-++.++|-.+++-|++++-..+.++-+
T Consensus 816 yE~~~K~~l~~l~~~---E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~ 889 (1074)
T KOG0250|consen 816 YEDKLKSRLEELKQK---EVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGE 889 (1074)
T ss_pred HHHHHHHhhHHHHHH---HHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 333222244443222 23222 222222112222222222 122345556899999999999999988888644
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.89 E-value=7.2e+02 Score=24.31 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHh
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKF 447 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~f 447 (533)
++|-.-|-.-+.++.++|..|+.++..+-..-+.|.--=..=..|...++..+..+..|.+.|..|-+|.|+-
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455667788888888888888877777776666667888999999999999999999888887753
No 130
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=22.61 E-value=5.7e+02 Score=22.99 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=65.8
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhh
Q 009482 343 AVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDS 422 (533)
Q Consensus 343 ~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~ 422 (533)
+.||-+||-+=--+ .-|-=.|+++|+.+|-.-++.-=.+|. ..|..+...+..++..++.....|+.-.+.
T Consensus 59 LalNAsIEAaraGe------~G~gF~vvA~eir~LA~~t~~~~~~I~---~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~ 129 (213)
T PF00015_consen 59 LALNASIEAARAGE------AGRGFAVVADEIRKLAEQTSESAKEIS---EIIEEIQEQISQVVESMEESREQIEEGSES 129 (213)
T ss_dssp HHHHHHHHHHHTCC------CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhcc------cchhHHHHHHHHHHhhhhhhhHHHHHH---HHHhhhhhhhhhhhhhhhcchhhhhhhccc
Confidence 56777777542210 112235888888888887776555554 357777777777777666665555543333
Q ss_pred HHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHH
Q 009482 423 LQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVEL 478 (533)
Q Consensus 423 Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~l 478 (533)
+..... .+..+...-+.-...+.++......-+..++++..-
T Consensus 130 ~~~~~~--------------~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~ 171 (213)
T PF00015_consen 130 VEETSE--------------SLEEIAESVEEISDSIEEISESAEEQSESIEQINES 171 (213)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcch--------------hhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 333222 233344444455556667777777777777666533
No 131
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=22.18 E-value=78 Score=35.74 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHH
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAA 245 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~ 245 (533)
-++|++++.+|.+..|||.|.++-|-+.++
T Consensus 625 i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L 654 (655)
T TIGR00631 625 IKQLEKEMKQAARNLEFEEAARLRDEILEL 654 (655)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 357999999999999999999999988765
No 132
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.08 E-value=6.1e+02 Score=26.27 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHH
Q 009482 368 DILTNELQKLLALVRDKEKEIAENDSNIRAVEERIS 403 (533)
Q Consensus 368 d~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs 403 (533)
.-|..|-..|++-++.-|.|-++.+..|..++....
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 133
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.80 E-value=1.1e+03 Score=26.14 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH----------HhhhhhchHHHHHHh
Q 009482 170 FEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLD----------EACEAEDFEAAQRIS 239 (533)
Q Consensus 170 l~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLE----------eACEaEDFe~AErIS 239 (533)
...|+..|..=+.+-..--..|..-+..--.-|+....+-.+-..-...||.+|. +.-++|||..|..|-
T Consensus 117 i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil 196 (560)
T PF06160_consen 117 IKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREIL 196 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444444444444444444556666666677777777777777777777777764 456789999998876
Q ss_pred HHHHH
Q 009482 240 DLLAA 244 (533)
Q Consensus 240 dsLAa 244 (533)
..+..
T Consensus 197 ~~l~~ 201 (560)
T PF06160_consen 197 EKLKE 201 (560)
T ss_pred HHHHH
Confidence 65543
No 134
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.64 E-value=1.6e+03 Score=27.87 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=97.9
Q ss_pred HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhc
Q 009482 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEND 392 (533)
Q Consensus 313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNd 392 (533)
+++....--+.++.+.-+++-+- .+.+..++..-.|-+-.+.+|.+- |...+..+-.....|+..+...-
T Consensus 291 ~~~~~~~~~~~~~~~~~~le~~~---~~l~~~~~~l~~~~a~~~~~eL~e-------l~~ql~~~~~~a~~~~~~~~~a~ 360 (1353)
T TIGR02680 291 ELETAREEERELDARTEALEREA---DALRTRLEALQGSPAYQDAEELER-------ARADAEALQAAAADARQAIREAE 360 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443332 233344444444555555555443 33366666677777888888888
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhh-------------H-----HhhhhHHHHhHhhhhhhhc
Q 009482 393 SNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLES-------------E-----AMSMKKKEIDKFLNDEVDR 454 (533)
Q Consensus 393 s~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dlet-------------E-----aL~lKkkeID~fls~ee~~ 454 (533)
++...++.++..+..++.+....+..-++.|-.....+-... + ++..++.+++.....-.+-
T Consensus 361 ~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~ 440 (1353)
T TIGR02680 361 SRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQ 440 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887776665555543333332222 0 2467788899888888888
Q ss_pred ccchHHHHHhcHHHHHHHHHHHHHHHHHH
Q 009482 455 GTKLKELARVSADEAKEYWEVVELRRSLM 483 (533)
Q Consensus 455 gakLRe~a~~s~~EAk~~qe~V~lRR~La 483 (533)
-..|++..+++..-...+++.-..++.+.
T Consensus 441 i~~L~~~~~~~e~a~~~~~~~~~~~~el~ 469 (1353)
T TIGR02680 441 VALLRRRDDVADRAEATHAAARARRDELD 469 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776555444444444444444
No 135
>PRK09039 hypothetical protein; Validated
Probab=21.61 E-value=9.5e+02 Score=25.19 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhh---hhhhhhhhhhhchhhHHHHHHhhhhh-hHHhhhhHHHH
Q 009482 370 LTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVS---DFQEYQSSINAKYDSLQSIISQLNLE-SEAMSMKKKEI 444 (533)
Q Consensus 370 L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS---~F~e~QssId~k~~~Lqs~lsq~dle-tEaL~lKkkeI 444 (533)
|..+|..+.......-..|...+.+|.++...|+.+=+ .-+..-.+...++.+|+..|...--+ ...|..-|.++
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44566666555555555555555555555554433321 22222234445555555555544322 55555555555
No 136
>PF13514 AAA_27: AAA domain
Probab=21.15 E-value=1.5e+03 Score=27.20 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhh
Q 009482 373 ELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQE 411 (533)
Q Consensus 373 EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e 411 (533)
++..++.-++..+..|+..+..+....++++.++..+..
T Consensus 737 ~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 737 ELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 444444555555555555555555555555555555443
No 137
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.74 E-value=1.5e+02 Score=25.55 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVS 407 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS 407 (533)
|++.+++++.--.-|..|...++.++.||..++.
T Consensus 30 Lees~~lyeeG~~L~k~C~~~L~~ae~kI~~l~~ 63 (80)
T PRK14067 30 LEESVALYKEGLGLARACREQLAKARNEIRLFTE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677777777777888888888888888876654
No 138
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.74 E-value=1.5e+02 Score=25.23 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSD 408 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~ 408 (533)
|++++++++.--.=+..|...++.++.||..++..
T Consensus 33 Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 33 LEESLAAFERGVALARQCQKKLQQAEQRVEKLLDE 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777888888888888777643
No 139
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.72 E-value=1.6e+03 Score=27.63 Aligned_cols=91 Identities=26% Similarity=0.307 Sum_probs=65.9
Q ss_pred hhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHH
Q 009482 388 IAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSAD 467 (533)
Q Consensus 388 IAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~ 467 (533)
-|+.+.+|.+...+|. +|.-.--+-+.--|.||..+.++|+----|++.-....+|=++- +-+..+-.
T Consensus 388 ~aerqeQidelKn~if----~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lk--------e~aegsrr 455 (1265)
T KOG0976|consen 388 QAERQEQIDELKNHIF----RLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLK--------EHAEGSRR 455 (1265)
T ss_pred HHHHHHHHHHHHHhhh----hhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHH--------HhhhhhHh
Confidence 3555666666665553 55555556667778999999999999999999999999997754 44444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhh
Q 009482 468 EAK-EYWEVVELRRSLMSSILKSR 490 (533)
Q Consensus 468 EAk-~~qe~V~lRR~LassIlKSr 490 (533)
.|+ -|-+.|..=|.+|-|.-|-|
T Consensus 456 raIeQcnemv~rir~l~~sle~qr 479 (1265)
T KOG0976|consen 456 RAIEQCNEMVDRIRALMDSLEKQR 479 (1265)
T ss_pred hHHHHHHHHHHHHHHHhhChhhhc
Confidence 444 36788888888888877655
No 140
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=20.35 E-value=1.2e+02 Score=34.58 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 217 SQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
..|+.+.+.|.++.+||+|-++-|-|.++++=
T Consensus 206 ~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~ 237 (624)
T PRK14669 206 RSLRARMEAAALEMQFELAAKYRDLITTVEEL 237 (624)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999998863
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.21 E-value=1.1e+03 Score=25.18 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 009482 502 KLSAEVQTLQQEASAARASLQV 523 (533)
Q Consensus 502 el~~dvQ~LrQqvS~AR~SLQE 523 (533)
.+.+++..+++++..+++.|..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666654
Done!