Query 009482
Match_columns 533
No_of_seqs 18 out of 20
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 94.8 0.69 2.4E-05 52.1 17.0 12 165-176 778-789 (1184)
2 3na7_A HP0958; flagellar bioge 90.7 7.9 0.00027 36.4 15.1 25 249-273 6-30 (256)
3 1c1g_A Tropomyosin; contractIl 89.2 9.7 0.00033 32.5 30.5 18 385-402 222-239 (284)
4 1e52_A Excinuclease ABC subuni 87.4 0.48 1.6E-05 37.8 3.6 33 216-248 26-58 (63)
5 3oja_B Anopheles plasmodium-re 79.7 12 0.00039 37.8 10.8 34 491-524 544-577 (597)
6 2dfs_A Myosin-5A; myosin-V, in 77.9 11 0.00037 42.8 10.9 68 371-438 976-1043(1080)
7 2p22_C Protein SRN2; endosome, 72.5 40 0.0014 31.5 11.6 34 417-450 127-166 (192)
8 2dfs_A Myosin-5A; myosin-V, in 72.0 24 0.00082 40.1 11.7 14 505-518 1030-1043(1080)
9 3na7_A HP0958; flagellar bioge 71.0 69 0.0024 30.0 19.4 119 327-454 5-123 (256)
10 3ghg_A Fibrinogen alpha chain; 66.7 34 0.0012 37.0 10.9 35 387-421 125-159 (562)
11 2fxo_A Myosin heavy chain, car 60.7 82 0.0028 27.1 12.5 78 382-462 9-89 (129)
12 3oja_B Anopheles plasmodium-re 60.6 86 0.003 31.5 12.1 46 361-406 505-550 (597)
13 1gp8_A Protein (scaffolding pr 60.0 9.6 0.00033 28.6 3.8 30 213-242 7-36 (40)
14 1cii_A Colicin IA; bacteriocin 58.7 29 0.001 37.3 8.6 87 339-427 304-390 (602)
15 3vkg_A Dynein heavy chain, cyt 58.6 1.6E+02 0.0054 37.8 16.1 58 170-227 1915-1972(3245)
16 2d7d_A Uvrabc system protein B 56.7 5.2 0.00018 42.2 2.7 34 215-248 627-660 (661)
17 1d7m_A Cortexillin I; coiled-c 55.1 69 0.0024 27.8 8.8 56 348-410 8-63 (101)
18 2w96_A G1/S-specific cyclin-D1 46.7 9.2 0.00031 35.7 2.4 99 409-507 45-148 (271)
19 2pjw_V Vacuolar protein sortin 46.5 45 0.0015 28.2 6.3 46 470-515 37-86 (91)
20 2jee_A YIIU; FTSZ, septum, coi 45.1 61 0.0021 27.2 6.8 67 345-411 11-80 (81)
21 3edv_A Spectrin beta chain, br 42.5 2E+02 0.0069 26.3 20.8 32 396-427 188-219 (323)
22 1l8d_A DNA double-strand break 41.3 1.1E+02 0.0038 24.9 7.8 28 405-432 65-92 (112)
23 2efr_A General control protein 40.1 2.2E+02 0.0075 26.0 18.0 110 216-353 2-111 (155)
24 3oja_A Leucine-rich immune mol 39.2 1.2E+02 0.0042 29.9 9.2 14 471-484 471-484 (487)
25 3tnu_B Keratin, type II cytosk 36.1 1.3E+02 0.0044 25.8 7.7 8 311-318 6-13 (129)
26 3tnu_B Keratin, type II cytosk 32.4 1.1E+02 0.0038 26.2 6.7 65 372-436 36-100 (129)
27 3f31_A Spectrin alpha chain, b 28.1 1.5E+02 0.0053 25.0 6.8 57 374-430 80-136 (149)
28 3tso_C RAB11 family-interactin 28.0 68 0.0023 26.7 4.4 42 375-416 17-58 (75)
29 1w98_B Cyclin E, G1/S-specific 27.3 45 0.0016 31.5 3.7 99 408-507 37-142 (283)
30 3m9b_A Proteasome-associated A 27.2 68 0.0023 31.6 4.9 40 494-533 64-103 (251)
31 1c4o_A DNA nucleotide excision 27.0 13 0.00046 39.2 0.0 35 214-248 611-645 (664)
32 2b3g_B Cellular tumor antigen 26.0 28 0.00097 24.2 1.5 13 308-320 12-24 (28)
33 3ghg_A Fibrinogen alpha chain; 25.9 3.7E+02 0.012 29.3 10.5 69 411-483 50-120 (562)
34 1ic2_A Tropomyosin alpha chain 25.4 2.4E+02 0.0081 22.5 7.1 59 367-432 15-73 (81)
35 4e81_A Chaperone protein DNAK; 24.9 2.7E+02 0.0091 25.8 8.3 17 308-324 118-134 (219)
36 2pjw_H Uncharacterized protein 24.4 1.1E+02 0.0038 25.7 5.1 66 440-506 8-75 (88)
37 3lbx_A Spectrin alpha chain, e 24.0 1.6E+02 0.0053 25.5 6.2 56 375-430 91-146 (161)
38 4dnd_A Syntaxin-10, SYN10; str 23.7 1.8E+02 0.0061 25.5 6.5 79 408-486 28-117 (130)
39 3tnu_A Keratin, type I cytoske 23.5 1.2E+02 0.0042 26.0 5.4 63 374-436 40-102 (131)
40 3u59_A Tropomyosin beta chain; 23.3 3.2E+02 0.011 22.6 9.4 68 363-430 7-74 (101)
41 1g3n_C V-cyclin; cyclin-depend 22.8 47 0.0016 30.7 2.8 96 410-507 40-142 (257)
42 1x79_B RAB GTPase binding effe 22.6 2.9E+02 0.0099 24.2 7.6 75 363-437 22-96 (112)
43 3nmd_A CGMP dependent protein 22.4 1.1E+02 0.0038 25.2 4.6 45 374-418 21-65 (72)
44 3mq7_A Bone marrow stromal ant 22.0 1.8E+02 0.006 26.2 6.1 93 279-404 18-110 (121)
45 1deq_A Fibrinogen (alpha chain 21.6 4.5E+02 0.015 27.5 9.9 49 376-427 92-140 (390)
46 3pdy_A Plectin; cytoskeleton, 21.3 4.3E+02 0.015 23.4 11.0 48 344-391 163-210 (210)
47 1ik9_A DNA repair protein XRCC 20.9 2.1E+02 0.0072 26.9 6.9 60 417-476 145-209 (213)
48 1m1j_C Fibrinogen gamma chain; 20.8 4.2E+02 0.014 27.3 9.5 41 411-451 31-71 (409)
49 1lyp_A CAP18; lipopolysacchari 20.6 1.1E+02 0.0039 21.7 3.7 25 165-189 1-25 (32)
50 2lw1_A ABC transporter ATP-bin 20.5 1.7E+02 0.0057 23.7 5.3 49 384-437 27-75 (89)
51 3v6i_A V-type ATP synthase sub 20.2 4.5E+02 0.015 23.2 9.4 75 280-355 22-96 (187)
52 3jsv_C NF-kappa-B essential mo 20.1 2.7E+02 0.0092 24.0 6.7 78 427-515 8-85 (94)
53 2fzt_A Hypothetical protein TM 20.0 49 0.0017 27.8 2.1 20 217-236 5-24 (79)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.85 E-value=0.69 Score=52.07 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=6.2
Q ss_pred chhhhHHHHHHH
Q 009482 165 DPHQRFEYLRSV 176 (533)
Q Consensus 165 ~~~erl~~lrsq 176 (533)
|.-..|+.+|..
T Consensus 778 g~l~~LE~~r~~ 789 (1184)
T 1i84_S 778 GVLAHLEEERDL 789 (1184)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344446665553
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.71 E-value=7.9 Score=36.42 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhhhchhhhhHHHH
Q 009482 249 QQSLLIALRDAEAHCDAIDSKMYDV 273 (533)
Q Consensus 249 k~~ll~aLRdAE~~~DsvD~kmq~v 273 (533)
+...|.-|-.-+...|.+...+.+.
T Consensus 6 ~L~~L~~LQ~lD~~i~~l~~~~~~l 30 (256)
T 3na7_A 6 HLKQLIEISHLDKEIDSLEPLIREK 30 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666665555553
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.21 E-value=9.7 Score=32.53 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=6.8
Q ss_pred hhhhhhhcchHHHHHHHH
Q 009482 385 EKEIAENDSNIRAVEERI 402 (533)
Q Consensus 385 E~EIAeNds~IkaV~erI 402 (533)
+.++......+..++.++
T Consensus 222 ~~~l~~l~~~~~~~~~~~ 239 (284)
T 1c1g_A 222 EEEIKVLSDKLKEAETRA 239 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 4
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=87.43 E-value=0.48 Score=37.78 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
-..|++++.+|++..|||.|-+|-|-+.++++.
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999875
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.72 E-value=12 Score=37.79 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=18.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009482 491 EDKVKLAKTEEKLSAEVQTLQQEASAARASLQVN 524 (533)
Q Consensus 491 Edk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~ 524 (533)
+++..+-+.-++..+.++.++|+++..+..++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555566666666666655543
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.92 E-value=11 Score=42.84 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhh
Q 009482 371 TNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMS 438 (533)
Q Consensus 371 ~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~ 438 (533)
.+|+..+-..|+..+.||++.+..++.....-...-......+.++..|+++|++...++..+-..|.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666655555554444433333334444444555555555555555555444444
No 7
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=72.51 E-value=40 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=25.2
Q ss_pred hhchhhHHHHHHhhhhhhHHhhhh------HHHHhHhhhh
Q 009482 417 NAKYDSLQSIISQLNLESEAMSMK------KKEIDKFLND 450 (533)
Q Consensus 417 d~k~~~Lqs~lsq~dletEaL~lK------kkeID~fls~ 450 (533)
+.=|.+||....+.+.++++|.-+ ..+||.||..
T Consensus 127 ~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 127 IALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 445678999999999999999753 3456666643
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.95 E-value=24 Score=40.11 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 009482 505 AEVQTLQQEASAAR 518 (533)
Q Consensus 505 ~dvQ~LrQqvS~AR 518 (533)
.+.+.|+||+.+..
T Consensus 1030 ~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1030 EQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555444444
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.96 E-value=69 Score=30.01 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=60.6
Q ss_pred hhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHh
Q 009482 327 RKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVV 406 (533)
Q Consensus 327 kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VV 406 (533)
++|+..++.+-++.--..|..-+.++ ..|-.-|.....-|...+..+-.-+..-+.+|..++..|..+..||...=
T Consensus 5 ~~L~~L~~LQ~lD~~i~~l~~~~~~l----p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 5 THLKQLIEISHLDKEIDSLEPLIREK----RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788887777666666655554 34555555555555555555555555555555555555555555544322
Q ss_pred hhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhc
Q 009482 407 SDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDR 454 (533)
Q Consensus 407 S~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~ 454 (533)
..-... .=+..|+.|+..+.... ..+....++|-+++..-+..
T Consensus 81 ~~l~~v--~~~kE~~aL~kEie~~~---~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 81 KKMSEI--KSERELRSLNIEEDIAK---ERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHC--SSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcc--CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 221110 11233444444444333 34444455555555554443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.69 E-value=34 Score=37.02 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=26.7
Q ss_pred hhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchh
Q 009482 387 EIAENDSNIRAVEERISIVVSDFQEYQSSINAKYD 421 (533)
Q Consensus 387 EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~ 421 (533)
+|..+-++|+.+|..|.+.|+.-+-.-.+||+|+.
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666678888888888888888888888887754
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.73 E-value=82 Score=27.14 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=42.4
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhh---hhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccch
Q 009482 382 RDKEKEIAENDSNIRAVEERISIVVSDFQEYQS---SINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKL 458 (533)
Q Consensus 382 k~KE~EIAeNds~IkaV~erIs~VVS~F~e~Qs---sId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakL 458 (533)
-..+.|++.-+..|+.+.+++..+-....+... .+...++.|+ .++..+++.+.-+-.-.+.++...-+-..+|
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~---~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ---LQVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766665555433 3334444444 3344455555544444444444444444555
Q ss_pred HHHH
Q 009482 459 KELA 462 (533)
Q Consensus 459 Re~a 462 (533)
.++-
T Consensus 86 ~el~ 89 (129)
T 2fxo_A 86 KEMN 89 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.58 E-value=86 Score=31.50 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=19.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHh
Q 009482 361 EILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVV 406 (533)
Q Consensus 361 e~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VV 406 (533)
+.+.+.-..+....+.++..+..-+.++.+....++.++..+..+-
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 550 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHH
Confidence 3333333334444444444444444444444444444444444433
No 13
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=60.04 E-value=9.6 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHhhhhhchHHHHHHhHHH
Q 009482 213 SLRHSQLEKQLDEACEAEDFEAAQRISDLL 242 (533)
Q Consensus 213 s~khk~LE~eLEeACEaEDFe~AErISdsL 242 (533)
+.+-.+||.|...||--||||.+..+-.-|
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456789999999999999999998765444
No 14
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=58.74 E-value=29 Score=37.34 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhh
Q 009482 339 NEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINA 418 (533)
Q Consensus 339 ~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~ 418 (533)
-.-|..||+.+-|+--|+++ .||.-+.-|.|+|.+.+=+..+.-=+|-...+.+|-..+.+|+.++|.-.-.|+..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa 381 (602)
T 1cii_A 304 IDNRANLNYLLSHSGLDYKR--NILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSA 381 (602)
T ss_dssp ECCHHHHHHHHTSCHHHHHH--HTSCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhHHhhccchhhhh--hhhcCCCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999999986 6999999999999999887777665666667778888899999999888877777777
Q ss_pred chhhHHHHH
Q 009482 419 KYDSLQSII 427 (533)
Q Consensus 419 k~~~Lqs~l 427 (533)
.-+..|...
T Consensus 382 ~t~e~k~A~ 390 (602)
T 1cii_A 382 RTNEQKHAN 390 (602)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666543
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.63 E-value=1.6e+02 Score=37.78 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhh
Q 009482 170 FEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEAC 227 (533)
Q Consensus 170 l~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeAC 227 (533)
+..-+..+..=|+.+...+..|..-++.+...+-+..+--.-|-..-..++++-++|-
T Consensus 1915 l~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae 1972 (3245)
T 3vkg_A 1915 LEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE 1972 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666677777777777777776666655555556666666666553
No 16
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=56.67 E-value=5.2 Score=42.21 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 215 RHSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 215 khk~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
--++||+++.+|++..|||+|.++-|.+.+++++
T Consensus 627 ~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 627 VVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999988753
No 17
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=55.06 E-value=69 Score=27.83 Aligned_cols=56 Identities=30% Similarity=0.506 Sum_probs=43.1
Q ss_pred hhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhh
Q 009482 348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQ 410 (533)
Q Consensus 348 sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~ 410 (533)
+++.++|..|-=++-|-|.|+ ||+.+|+.++ .|-++-+.+|.+++-||-.+.-+..
T Consensus 8 ~le~sLe~EK~S~eeL~kQk~----eL~~~l~~l~---~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 8 GLENSLESEKVSREQLIKQKD----QLNSLLASLE---SEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455667778888888888875 6677777664 5777788899999999999887765
No 18
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=46.68 E-value=9.2 Score=35.67 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred hhhhhhhhhhchh-----hHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHH
Q 009482 409 FQEYQSSINAKYD-----SLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLM 483 (533)
Q Consensus 409 F~e~QssId~k~~-----~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~La 483 (533)
|.+.|.+|+.+.- =+.......++-.+++.+.-+-+|.|++.-.-.+.+|.-++-+|-.=|.-|.+..-..=+-.
T Consensus 45 ~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~ 124 (271)
T 2w96_A 45 FKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKL 124 (271)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 4556777665432 26677777888899999999999999998888888999999999999999998732111112
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHH
Q 009482 484 SSILKSREDKVKLAKTEEKLSAEV 507 (533)
Q Consensus 484 ssIlKSrEdk~~L~k~EEel~~dv 507 (533)
..+-...=.|-.+.+||..|+..+
T Consensus 125 ~~~~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 125 CIYTDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHC
Confidence 233333446778899998888754
No 19
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=46.55 E-value=45 Score=28.20 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH----HHHHHHH
Q 009482 470 KEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQ----TLQQEAS 515 (533)
Q Consensus 470 k~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ----~LrQqvS 515 (533)
..|+.++.+|=||+.+|-+....+-.|.-|=+||+.=+. +|.|+++
T Consensus 37 eLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l~ 86 (91)
T 2pjw_V 37 NLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQQLQ 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999998764 4555554
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.08 E-value=61 Score=27.16 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=51.4
Q ss_pred hhhhhhhhhhhhhH---HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhh
Q 009482 345 LNNSIEHSVEDDLR---EKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQE 411 (533)
Q Consensus 345 Ln~sIeh~vEdDkr---EKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e 411 (533)
|+.-|..+|+--.. |-+-|.-|...|..|.+.+-.-...+..|+...-......++||..++..+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444455543333 77778888889999999988888888889998889999999999998877643
No 21
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=42.54 E-value=2e+02 Score=26.29 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 009482 396 RAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (533)
Q Consensus 396 kaV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (533)
..|+.+...|..++...+.-+...-..|+..+
T Consensus 188 ~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~ 219 (323)
T 3edv_A 188 DDIQKRENEVLEAWKSLLDACESRRVRLVDTG 219 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444444433
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.30 E-value=1.1e+02 Score=24.88 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=12.1
Q ss_pred HhhhhhhhhhhhhhchhhHHHHHHhhhh
Q 009482 405 VVSDFQEYQSSINAKYDSLQSIISQLNL 432 (533)
Q Consensus 405 VVS~F~e~QssId~k~~~Lqs~lsq~dl 432 (533)
++..+..-...+..++..|...+..++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 23
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=40.14 E-value=2.2e+02 Score=26.01 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhh
Q 009482 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADA 295 (533)
Q Consensus 216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA 295 (533)
-..||.||.+| + +-|++--+.++.+|.+..+.-.-+..|++.|-.+..+|..|-
T Consensus 2 ~~~lE~qlkea--a---e~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~--------------------- 55 (155)
T 2efr_A 2 MKQLEDKVEEL--L---SKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVT--------------------- 55 (155)
T ss_dssp HHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHH--H---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 35799999999 4 445555566666777777666666666666665555554332
Q ss_pred hhhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482 296 SNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV 353 (533)
Q Consensus 296 ~~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v 353 (533)
|+ -..+.-+++-++.-++.+..-...|..+--+.+-=..|...-=..|+.+|+.+-
T Consensus 56 -~n-lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 56 -NN-LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp -HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Hh-hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122333444444455555555555555544444444444333345555555543
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.24 E-value=1.2e+02 Score=29.94 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 009482 471 EYWEVVELRRSLMS 484 (533)
Q Consensus 471 ~~qe~V~lRR~Las 484 (533)
.|+..|....-||+
T Consensus 471 ~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 471 TLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555444544
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.08 E-value=1.3e+02 Score=25.76 Aligned_cols=8 Identities=38% Similarity=0.854 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 009482 311 SEEMEKWL 318 (533)
Q Consensus 311 skEme~W~ 318 (533)
..|+|.|+
T Consensus 6 r~eaE~~y 13 (129)
T 3tnu_B 6 RTEAESWY 13 (129)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44566665
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.44 E-value=1.1e+02 Score=26.16 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHH
Q 009482 372 NELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEA 436 (533)
Q Consensus 372 ~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEa 436 (533)
.|+.+|=.-|...+.||...-+.....+..|..+=.+|..--.++..++..|.+.|.++..+.+.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45666666677777777777777777777777777777666667777777777777777665544
No 27
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=28.05 E-value=1.5e+02 Score=25.01 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQL 430 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~ 430 (533)
+..+|..-+.-|+||.-|..++..|...=...+..-|.....|..+++.|+..-..+
T Consensus 80 v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L 136 (149)
T 3f31_A 80 LQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELL 136 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 455666677778888888888888888777777766666667777777776654443
No 28
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=27.98 E-value=68 Score=26.74 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhh
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSI 416 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssI 416 (533)
++|+.+|-..+.+|..-|.+|++.|.=|-+...+--|-.-+|
T Consensus 17 eELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~i 58 (75)
T 3tso_C 17 EEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSI 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 478888999999999999999999999999888766544433
No 29
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=27.26 E-value=45 Score=31.49 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=71.6
Q ss_pred hhhhhhhhhhhch-----hhHHHHHHhhhhhhHHhhhhHHHHhHhhhh-hhhcccchHHHHHhcHHHHHHHHHHHHH-HH
Q 009482 408 DFQEYQSSINAKY-----DSLQSIISQLNLESEAMSMKKKEIDKFLND-EVDRGTKLKELARVSADEAKEYWEVVEL-RR 480 (533)
Q Consensus 408 ~F~e~QssId~k~-----~~Lqs~lsq~dletEaL~lKkkeID~fls~-ee~~gakLRe~a~~s~~EAk~~qe~V~l-RR 480 (533)
+|-+.|..|+.+. +=+.+.....++-.+++.+.-+-+|.|++. ..-++.+|.-++-+|-.=|.-|.|..-. =+
T Consensus 37 ~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~ 116 (283)
T 1w98_B 37 HFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH 116 (283)
T ss_dssp TGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHH
Confidence 3445577776443 337788888899999999999999999997 4567889999999999999999876211 12
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 009482 481 SLMSSILKSREDKVKLAKTEEKLSAEV 507 (533)
Q Consensus 481 ~LassIlKSrEdk~~L~k~EEel~~dv 507 (533)
.+. .+-...=.+-.+.+||..|+..+
T Consensus 117 ~~~-~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 117 QFA-YVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp HHH-HTTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHH-HHHcCCCCHHHHHHHHHHHHHHc
Confidence 222 23222335778899999888764
No 30
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.20 E-value=68 Score=31.59 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=36.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 009482 494 VKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI 533 (533)
Q Consensus 494 ~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~~~~~~~~~~ 533 (533)
..|....++|.+..+.+++|+...+.-|+-+.+.-+|||.
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGt 103 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGV 103 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4566778889999999999999999999999999999983
No 31
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=27.01 E-value=13 Score=39.21 Aligned_cols=35 Identities=40% Similarity=0.454 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482 214 LRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETH 248 (533)
Q Consensus 214 ~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKe 248 (533)
..-++||+++.+|.+..+||+|-++-|.+..+++.
T Consensus 611 ~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 611 ERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999876
No 32
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=26.00 E-value=28 Score=24.21 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=10.8
Q ss_pred hhcHHHHHHHHhh
Q 009482 308 SLSSEEMEKWLAS 320 (533)
Q Consensus 308 ~~sskEme~W~ss 320 (533)
-||...|+||++-
T Consensus 12 mlspddi~qw~s~ 24 (28)
T 2b3g_B 12 MLSPDDIEQWFTE 24 (28)
T ss_dssp GCCHHHHHHHHHC
T ss_pred hcChHHHHHHhhc
Confidence 3789999999974
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.88 E-value=3.7e+02 Score=29.34 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=44.9
Q ss_pred hhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchH-HHHHhcHHHHHHHHHHH-HHHHHHH
Q 009482 411 EYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLK-ELARVSADEAKEYWEVV-ELRRSLM 483 (533)
Q Consensus 411 e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLR-e~a~~s~~EAk~~qe~V-~lRR~La 483 (533)
++|..|+..=.+|...+.+|..+-+.|+-.+++|+.+...-.+ .|| .+..+. +.--.|.|+- +|||.+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E---~Lr~rq~q~~-dNdNtynE~S~ELRRrIq 120 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIME---ILRGDFSSAN-NRDNTYNRVSEDLRSRIE 120 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---TTSSHHHHHH-HHHHHHHHTTHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH---HHHHHHHhhh-ccchhHHHHHHHHHHHHH
Confidence 4677777777778888888888888888888888888654433 333 233333 3333555555 7777654
No 34
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.44 E-value=2.4e+02 Score=22.48 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhh
Q 009482 367 KDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432 (533)
Q Consensus 367 kd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dl 432 (533)
.|...+.++.+-..++..|........-|..++.||..+ +.++|.--.+|...+.++..
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544445555555555444 44444444445555555443
No 35
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=24.90 E-value=2.7e+02 Score=25.78 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=11.1
Q ss_pred hhcHHHHHHHHhhHhhh
Q 009482 308 SLSSEEMEKWLASTEAL 324 (533)
Q Consensus 308 ~~sskEme~W~ss~E~L 324 (533)
.||..||+.+..-.+.+
T Consensus 118 ~Ls~eeI~~m~~~a~~~ 134 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEAN 134 (219)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 47777777776655544
No 36
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=24.38 E-value=1.1e+02 Score=25.74 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=42.6
Q ss_pred hHHHHhHhhhhhhhccc--chHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 009482 440 KKKEIDKFLNDEVDRGT--KLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAE 506 (533)
Q Consensus 440 KkkeID~fls~ee~~ga--kLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~d 506 (533)
-.+.||+++..=..... .+-++++ -.+=-..|++++.+|=+|...|=|-...|-.|.-|=++++.-
T Consensus 8 q~~~vd~Ll~~L~~~~p~~~~~~~~~-d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a 75 (88)
T 2pjw_H 8 QKTTIDQLHNSLNAASKTGNSNEVLQ-DPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANA 75 (88)
T ss_dssp THHHHHHHHHHHHHHHTTCCTHHHHS-CHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHhcCCCCCchhhhcc-cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888876543221 1111111 112236799999999999999999998887776655554443
No 37
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=23.97 E-value=1.6e+02 Score=25.52 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhh
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQL 430 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~ 430 (533)
..+|..-+.-|+||..|..+++.|...=...+..-|.....|..+++.|+..-..+
T Consensus 91 ~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L 146 (161)
T 3lbx_A 91 QGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLL 146 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 34455555556666677777777766666666655555566666666665544433
No 38
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.73 E-value=1.8e+02 Score=25.53 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=50.8
Q ss_pred hhhhhhhhhhhchhhHHHHHHhhhh--------hhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHH---HHHH
Q 009482 408 DFQEYQSSINAKYDSLQSIISQLNL--------ESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEY---WEVV 476 (533)
Q Consensus 408 ~F~e~QssId~k~~~Lqs~lsq~dl--------etEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~---qe~V 476 (533)
=|+.-|.+|...++++++-...-.. -.+.+.-.++|+.+-|..-+.-=..|.+.|+++.....-| ...|
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei 107 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDL 107 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHH
Confidence 4666666666666666666665321 1234566677778877777777777888888776554444 4557
Q ss_pred HHHHHHHHHH
Q 009482 477 ELRRSLMSSI 486 (533)
Q Consensus 477 ~lRR~LassI 486 (533)
..||.+...+
T Consensus 108 ~~Rr~fV~~~ 117 (130)
T 4dnd_A 108 QERKVFVERM 117 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.54 E-value=1.2e+02 Score=26.01 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHH
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEA 436 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEa 436 (533)
+.+|=.-|...+.||...-+.....+..|..+=.+|..--.++..++..|...|.++..+.+.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555444444455555555555555554455566666666666666555443
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.26 E-value=3.2e+02 Score=22.55 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=33.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhh
Q 009482 363 LYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQL 430 (533)
Q Consensus 363 l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~ 430 (533)
+.||=..|.-|.+..+..+-..|..+-.-...-..+++-|.++-.++...+...|.--.+|...+.++
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444444444555555544444445555544444444444433
No 41
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=22.83 E-value=47 Score=30.65 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=72.0
Q ss_pred hhhhhhhhhch-----hhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHH--HHHHHH
Q 009482 410 QEYQSSINAKY-----DSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVV--ELRRSL 482 (533)
Q Consensus 410 ~e~QssId~k~-----~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V--~lRR~L 482 (533)
.+.|..|+.+. +=+.+.-...++-.+++-+.-+=+|.|++...-++.+|.-++-+|-.=|.-|+|.. .++ .+
T Consensus 40 ~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~-d~ 118 (257)
T 1g3n_C 40 GTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTS-SL 118 (257)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHH-HH
T ss_pred HhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHH-HH
Confidence 34566666553 44778888889999999999999999999888888889999999999999998852 222 22
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHH
Q 009482 483 MSSILKSREDKVKLAKTEEKLSAEV 507 (533)
Q Consensus 483 assIlKSrEdk~~L~k~EEel~~dv 507 (533)
..|-...=.+-.+.+||..++..+
T Consensus 119 -~~~~~~~~~~~~i~~mE~~iL~~L 142 (257)
T 1g3n_C 119 -CYAAADSFSRQELIDQEKELLEKL 142 (257)
T ss_dssp -HHHTTTCSCHHHHHHHHHHHHHHT
T ss_pred -HHHHCCCCCHHHHHHHHHHHHHHC
Confidence 223333445677889998888754
No 42
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.64 E-value=2.9e+02 Score=24.24 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=54.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHh
Q 009482 363 LYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAM 437 (533)
Q Consensus 363 l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL 437 (533)
|.|-+..-++.-..+-.....-.++|++.-.+++..+--+..+=..|-..|..+.-.+..|..+..+|.-+-..|
T Consensus 22 L~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 22 LEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333333345555566677888889999999999999999999999999999999999988887665554
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.39 E-value=1.1e+02 Score=25.19 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINA 418 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~ 418 (533)
+.+|=.+++.|..||-.-|.+|++.+.+|..-=+--.+.|+-+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 44
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.98 E-value=1.8e+02 Score=26.18 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=60.9
Q ss_pred hhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhH
Q 009482 279 AAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLR 358 (533)
Q Consensus 279 aaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkr 358 (533)
-|++||- +.+.|-..-+-+|++.-..-+-+|-+|..-+.+-+. .=++
T Consensus 18 rAq~ECr--------N~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~-------------------------SL~~ 64 (121)
T 3mq7_A 18 RAVMEAR--------NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA-------------------------SLDA 64 (121)
T ss_dssp HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH
T ss_pred HHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH
Confidence 3566663 333444444556666656656677777554433222 2223
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHH
Q 009482 359 EKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISI 404 (533)
Q Consensus 359 EKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~ 404 (533)
||.--.|+..-|.+|+..|=..++.+++|+.+.-..++...-||..
T Consensus 65 ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 65 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3443366777889999999999999999999998888888888864
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.58 E-value=4.5e+02 Score=27.50 Aligned_cols=49 Identities=12% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 009482 376 KLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (533)
Q Consensus 376 ~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (533)
.+.+++|.+.+.+-+||+.+.+|-+-+ =.+..-+|-.|+..+-+|+.-+
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eL---e~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDL---RSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHH
Confidence 345667888888888888776553322 1223334555555555444333
No 46
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=21.30 E-value=4.3e+02 Score=23.37 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=25.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 009482 344 VLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEN 391 (533)
Q Consensus 344 ~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeN 391 (533)
.|+..-+.+++..--..+.+..+.+-|..--..|+.|++.-|.-+-+|
T Consensus 163 ~l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~hLk~~ 210 (210)
T 3pdy_A 163 ELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 210 (210)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444555555444455555666666666666666666555444433
No 47
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.87 E-value=2.1e+02 Score=26.95 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=43.9
Q ss_pred hhchhhHHHHHHhhhhhhHHhhhhHHHHh-----HhhhhhhhcccchHHHHHhcHHHHHHHHHHH
Q 009482 417 NAKYDSLQSIISQLNLESEAMSMKKKEID-----KFLNDEVDRGTKLKELARVSADEAKEYWEVV 476 (533)
Q Consensus 417 d~k~~~Lqs~lsq~dletEaL~lKkkeID-----~fls~ee~~gakLRe~a~~s~~EAk~~qe~V 476 (533)
..++++|+....++..+-|.++..|++.+ +|+-.=-+|-+|+|++=+--..+|+..++-.
T Consensus 145 ~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 34567777888888888888888888766 6888888888888888855566676665543
No 48
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.80 E-value=4.2e+02 Score=27.33 Aligned_cols=41 Identities=10% Similarity=0.246 Sum_probs=32.2
Q ss_pred hhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhh
Q 009482 411 EYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDE 451 (533)
Q Consensus 411 e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~e 451 (533)
..|..++..+..|...+.++..-|+.....++.|.......
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34677888888888888888888888888888887776553
No 49
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=20.61 E-value=1.1e+02 Score=21.65 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 009482 165 DPHQRFEYLRSVISDKLNRARELAA 189 (533)
Q Consensus 165 ~~~erl~~lrsqIs~KL~~~~q~Aa 189 (533)
|.+.||+..|..|.+||..+-|...
T Consensus 1 glrkrlrkfrnkikeklkkigqkiq 25 (32)
T 1lyp_A 1 GLRKRLRKFRNKIKEKLKKIGQKIQ 25 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888754
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.55 E-value=1.7e+02 Score=23.65 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=26.7
Q ss_pred hhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHh
Q 009482 384 KEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAM 437 (533)
Q Consensus 384 KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL 437 (533)
-|.+|+.....|.+++..+++ .+|+. ++. .++..|+..+.++..+-+.+
T Consensus 27 le~~Ie~LE~~i~~le~~lad--p~~y~--~d~-~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVAD--ASFFS--QPH-EQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--TTGGG--SCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC--ccccc--CCH-HHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777765 23331 121 24445555555555444443
No 51
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=20.20 E-value=4.5e+02 Score=23.15 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=41.6
Q ss_pred hhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhh
Q 009482 280 AEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVED 355 (533)
Q Consensus 280 aEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEd 355 (533)
|++++..+++.--.+|..-.....++++.-...++++-. |.-.|++++.-|..--.+|+.....+..-|.....+
T Consensus 22 A~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~-s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~~ 96 (187)
T 3v6i_A 22 AEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAE-SAGELLVATARTQARGEVLEEVRRRVREALEALPQK 96 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 445555555555555555555555555554444444333 334566777766666666666666665555555543
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.08 E-value=2.7e+02 Score=23.97 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=51.6
Q ss_pred HHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 009482 427 ISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAE 506 (533)
Q Consensus 427 lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~d 506 (533)
..++..-.++|..|..+||++-..-.++...+ |.+.+-.--+..|.. -...-|.||-++.--=|+|..+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~-E~i~vLk~Qv~IY~~----------DF~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-ETVPVLKAQADIYKA----------DFQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHH
Confidence 34555667899999999999876554444433 444444444444433 3456788888887777778888
Q ss_pred HHHHHHHHH
Q 009482 507 VQTLQQEAS 515 (533)
Q Consensus 507 vQ~LrQqvS 515 (533)
+..|+.+++
T Consensus 77 l~~lq~q~~ 85 (94)
T 3jsv_C 77 LEQLQREFN 85 (94)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 888877654
No 53
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=20.02 E-value=49 Score=27.81 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhhchHHHH
Q 009482 217 SQLEKQLDEACEAEDFEAAQ 236 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AE 236 (533)
-++|++..+|.|.||||.--
T Consensus 5 ~EIEk~ID~aIE~edyE~L~ 24 (79)
T 2fzt_A 5 DEIERKIDEAIEKEDYETLL 24 (79)
T ss_dssp HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 47899999999999998643
Done!