Query 009482
Match_columns 533
No_of_seqs 18 out of 20
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 06:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009482.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009482hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 70.6 1.8 0.00013 32.0 3.6 35 215-249 18-52 (56)
2 d1hcia4 a.7.1.1 (A:633-746) al 69.0 5.1 0.00037 30.4 6.2 72 374-448 39-110 (114)
3 d1cuna2 a.7.1.1 (A:116-219) Sp 46.3 38 0.0028 24.5 7.5 72 356-427 28-103 (104)
4 d1u5pa1 a.7.1.1 (A:1662-1771) 44.2 31 0.0023 25.1 6.7 50 377-426 40-89 (110)
5 d1u5pa2 a.7.1.1 (A:1772-1872) 42.4 39 0.0028 24.1 6.9 59 374-432 33-91 (101)
6 d2fzta1 a.46.3.1 (A:1-78) Hypo 39.1 6.7 0.00049 30.9 2.1 22 217-238 4-25 (78)
7 d1cuna2 a.7.1.1 (A:116-219) Sp 33.8 61 0.0045 23.3 6.8 62 372-433 30-91 (104)
8 d2spca_ a.7.1.1 (A:) Spectrin 31.6 63 0.0046 23.0 6.5 50 378-427 42-91 (107)
9 d1s35a2 a.7.1.1 (A:1169-1273) 31.5 75 0.0054 22.9 7.0 53 375-427 36-88 (105)
10 d1s35a1 a.7.1.1 (A:1063-1168) 27.5 95 0.0069 22.0 6.9 57 374-430 34-91 (106)
11 d1quua1 a.7.1.1 (A:1-124) alph 26.2 1E+02 0.0076 22.6 7.1 51 374-424 50-100 (124)
12 d1s35a2 a.7.1.1 (A:1169-1273) 26.1 68 0.005 23.1 5.9 65 360-424 35-103 (105)
13 d1u5pa1 a.7.1.1 (A:1662-1771) 25.3 1.1E+02 0.0081 21.9 7.1 46 382-427 63-108 (110)
14 d1cxzb_ a.2.6.1 (B:) Protein k 24.1 1.3E+02 0.0092 23.7 7.4 22 205-226 61-82 (86)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=70.62 E-value=1.8 Score=32.05 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhH
Q 009482 215 RHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQ 249 (533)
Q Consensus 215 khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek 249 (533)
.-+.||++..+|.+.-|||.|-+|-|-+..+++..
T Consensus 18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 18 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999987653
No 2
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.99 E-value=5.1 Score=30.43 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFL 448 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fl 448 (533)
++.+|...+.-++||.-+..+|+.|...=..++..-+.....|..+++.|+..-..+.. .+.-++.+|++-|
T Consensus 39 ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~---~~~~R~~~Le~~i 110 (114)
T d1hcia4 39 LEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLT---TIARTINEVETQI 110 (114)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 56778888888899999999999998888888888888888898888888887777663 3445666666643
No 3
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=46.25 E-value=38 Score=24.51 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=48.2
Q ss_pred hhHHHHHHhhhhhhHHHHHHH----HHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 009482 356 DLREKEILYKKKDILTNELQK----LLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (533)
Q Consensus 356 DkrEKe~l~kkkd~L~~EL~~----LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (533)
|...-+.|.+|-..|.+|+.. +-.++..-+.=|..+...-..|++++..|-.+|.+.+..+..+-..|+.++
T Consensus 28 d~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le~s~ 103 (104)
T d1cuna2 28 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 103 (104)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444555555555555543 334445555557777777788888888888888888888888777777665
No 4
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=44.23 E-value=31 Score=25.09 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHH
Q 009482 377 LLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSI 426 (533)
Q Consensus 377 LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~ 426 (533)
++..-+.-+.+|.....+|..|...-...+...+.....|-.+++.|+..
T Consensus 40 ~~~~h~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~ 89 (110)
T d1u5pa1 40 LLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGR 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444433
No 5
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=42.43 E-value=39 Score=24.07 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dl 432 (533)
++.|+.--+.-+.+|+..-.+|..|......++..-+.-...|..+++.|+..-.++..
T Consensus 33 ~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~ 91 (101)
T d1u5pa2 33 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQ 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555666666666665555543
No 6
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=39.08 E-value=6.7 Score=30.87 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHH
Q 009482 217 SQLEKQLDEACEAEDFEAAQRI 238 (533)
Q Consensus 217 k~LE~eLEeACEaEDFe~AErI 238 (533)
-++|++..+|.|.||||.--.+
T Consensus 4 ~EiErkIDeaIE~EDyE~L~~L 25 (78)
T d2fzta1 4 DEIERKIDEAIEKEDYETLLSL 25 (78)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 4799999999999999975443
No 7
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.80 E-value=61 Score=23.32 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhh
Q 009482 372 NELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLE 433 (533)
Q Consensus 372 ~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dle 433 (533)
..++.|+...+.-+.+|.....++..|...-..++..-|.....|..+++.|+.....+...
T Consensus 30 ~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~ 91 (104)
T d1cuna2 30 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKA 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888889999999999999999988888888887777788888888888777666543
No 8
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=31.55 E-value=63 Score=23.04 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=22.4
Q ss_pred HHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 009482 378 LALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (533)
Q Consensus 378 L~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (533)
+......+.+|..+..+|..|...-...+...|...-.|..+++.|+..-
T Consensus 42 ~~~h~~~~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w 91 (107)
T d2spca_ 42 IKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERW 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 33333334444444555555555554444444433334444444444333
No 9
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.46 E-value=75 Score=22.86 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 009482 375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (533)
Q Consensus 375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (533)
+.|+..-+.-+.+|.....+|..+...-..++..-|.....|..+++.|+..-
T Consensus 36 ~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw 88 (105)
T d1s35a2 36 EAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRH 88 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Confidence 33333344444455555555555555555555555555555555555554433
No 10
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.53 E-value=95 Score=22.04 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhh-hhhhhchhhHHHHHHhh
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQ-SSINAKYDSLQSIISQL 430 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~Q-ssId~k~~~Lqs~lsq~ 430 (533)
++.++..-+.-+.+|..+..+|..|...-..++...+..+ ..|.-+++.|+..-..+
T Consensus 34 ~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~w~~L 91 (106)
T d1s35a1 34 AEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDAL 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3333433334444455555555555555555444433222 23444444444444333
No 11
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.15 E-value=1e+02 Score=22.59 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHH
Q 009482 374 LQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQ 424 (533)
Q Consensus 374 L~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lq 424 (533)
++.++.-.+.-+.+|.....+|..|...-..++..-+.-...|..+++.|+
T Consensus 50 v~~l~~~h~~~~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~ 100 (124)
T d1quua1 50 VRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKIC 100 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 333444444444445555555555555444455444444444444444433
No 12
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.14 E-value=68 Score=23.09 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=45.3
Q ss_pred HHHHhhhhhhHHHHHHHH----HHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHH
Q 009482 360 KEILYKKKDILTNELQKL----LALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQ 424 (533)
Q Consensus 360 Ke~l~kkkd~L~~EL~~L----L~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lq 424 (533)
-+.|+||-+.|..+|... -.+...-+.=|.++...-..|..|+..|..+|...+.-.+..-..|+
T Consensus 35 v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~~L~ 103 (105)
T d1s35a2 35 AEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLR 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345566666666666543 33444446667788888889999999999999988877776666554
No 13
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.29 E-value=1.1e+02 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=38.5
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHH
Q 009482 382 RDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSII 427 (533)
Q Consensus 382 k~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~l 427 (533)
..-+.=|..+......|.+++..|-.+|......+......|+.++
T Consensus 63 ~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~R~~~L~ea~ 108 (110)
T d1u5pa1 63 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH 108 (110)
T ss_dssp HHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445678888899999999999999999999999999998775
No 14
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.10 E-value=1.3e+02 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.132 Sum_probs=17.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHh
Q 009482 205 AADDVELASLRHSQLEKQLDEA 226 (533)
Q Consensus 205 aaEd~~sas~khk~LE~eLEeA 226 (533)
|+-.|.....+-.+|-.||++.
T Consensus 61 V~~eL~~sN~kL~~L~~eL~eL 82 (86)
T d1cxzb_ 61 VELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6667778888888888888764
Done!