BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009484
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN--IPPAPPKGLLRM--- 122
V Y+V P + V RRF++FL L+ L + + +PP P K L+ M
Sbjct: 22 VAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81
Query: 123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
S LE+RR +LE ++ ++++ + + V FLE E
Sbjct: 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127
>pdb|3LUI|A Chain A, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|B Chain B, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|C Chain C, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
Length = 115
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 87 GVLR---RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143
GVL R++ L L L+K + +P PPK L + + A +E+RR LE++M +
Sbjct: 32 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSL-TPAEVEQRREQLEKYMQAVR 90
Query: 144 SDIDLSRSVSVASFL 158
D L S + SFL
Sbjct: 91 QDPLLGSSETFNSFL 105
>pdb|3FOG|A Chain A, Crystal Structure Of The Px Domain Of Sorting Nexin-17
(Snx17)
Length = 115
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 87 GVLR---RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143
GVL R++ L L L+K + +P PPK L + + A +E+RR LE++M +
Sbjct: 29 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSL-TPAEVEQRREQLEKYMQAVR 87
Query: 144 SDIDLSRSVSVASFL 158
D L S + SFL
Sbjct: 88 QDPLLGSSETFNSFL 102
>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
Length = 138
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPP----KGLLRMK 123
+ YR+ E ++ V RR+ +FL L L++A P IPP P KG++
Sbjct: 27 ITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERF 86
Query: 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167
+ +E RR +L +++ ++ L+ + FL +A SS
Sbjct: 87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSS 130
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 88 VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDID 147
V RR+ F KL+ LKK FP + + +++RR L E++ L+ +
Sbjct: 41 VFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPE 100
Query: 148 LSRSVSVASFLELEAAARSS 167
L V +FL++++ S
Sbjct: 101 LYNHPDVRAFLQMDSPRHQS 120
>pdb|2V14|A Chain A, Kinesin 16b Phox-Homology Domain (Kif16b)
Length = 134
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
++IP +V+ + +D+ ++ V + T V RR++ F + LK + +
Sbjct: 8 ISIPRYVLCGQGKDAHFEFEVKITV-------LDETWTVFRRYSRFREXHKTLKLKYAEL 60
Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS 144
PPK L K ++ ERR LE+++ S
Sbjct: 61 AALEFPPKKLFGNKDERVIAERRSHLEKYLRDFFS 95
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates
pdb|1XTN|B Chain B, Crystal Structure Of Cisk-Px Domain With Sulfates
Length = 120
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 88 VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDID 147
V RR+ F KL+ LKK FP + + +++RR L E++ L+ +
Sbjct: 41 VFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPE 100
Query: 148 LSRSVSVASFLELEAAARSS 167
L V +FL++++ S
Sbjct: 101 LYNHPDVRAFLQMDSPRHQS 120
>pdb|3P0C|A Chain A, Nischarin Px-Domain
pdb|3P0C|B Chain B, Nischarin Px-Domain
Length = 130
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 115 PPKGLLRMKSRALLEERRCSLEEWMTKLLS 144
PPK ++ SR+L+E+R LE ++ KLL+
Sbjct: 78 PPKKIIGKNSRSLVEKREKDLEVYLQKLLA 107
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 351 IPNSSADGSPGLHRCAEVS-SSREILGNSDLQFSGDAELVIPLDQRHKLSRVLL------ 403
I + + G L RCA + SS+ I N+D + V+ LD R+ L L+
Sbjct: 147 ITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLD-RNDLDDKLIGIKKIP 205
Query: 404 --TMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILS 461
ME L + + E K + K+ L VELE +K ++ +
Sbjct: 206 GGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVE 265
Query: 462 ERERLTQMQWDM--EELRQ 478
+ + + +W + E+LRQ
Sbjct: 266 DYQAIVDAEWQLIFEKLRQ 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,078,636
Number of Sequences: 62578
Number of extensions: 601385
Number of successful extensions: 1105
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 28
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)