Query 009484
Match_columns 533
No_of_seqs 161 out of 1089
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 13:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06879 PX_UP1_plant The phosp 100.0 4.9E-29 1.1E-33 228.1 12.6 114 48-161 1-138 (138)
2 cd06877 PX_SNX14 The phosphoin 99.9 1.8E-24 3.9E-29 192.2 13.8 113 48-160 3-118 (119)
3 cd06861 PX_Vps5p The phosphoin 99.9 3.4E-24 7.3E-29 187.5 12.8 111 49-161 2-112 (112)
4 cd07280 PX_YPT35 The phosphoin 99.9 5.5E-24 1.2E-28 188.0 12.8 110 48-159 3-119 (120)
5 cd06865 PX_SNX_like The phosph 99.9 2.4E-23 5.1E-28 184.6 12.7 99 63-161 19-120 (120)
6 cd07276 PX_SNX16 The phosphoin 99.9 1.9E-23 4.1E-28 182.0 11.8 106 48-161 4-110 (110)
7 cd06873 PX_SNX13 The phosphoin 99.9 4.1E-23 8.8E-28 183.1 13.4 112 47-160 4-119 (120)
8 cd06897 PX_SNARE The phosphoin 99.9 5E-23 1.1E-27 177.1 12.9 103 49-161 2-108 (108)
9 cd06870 PX_CISK The phosphoino 99.9 3.6E-23 7.8E-28 180.1 11.7 105 49-161 4-109 (109)
10 cd06868 PX_HS1BP3 The phosphoi 99.9 5E-23 1.1E-27 183.6 12.6 110 49-161 3-120 (120)
11 cd06886 PX_SNX27 The phosphoin 99.9 5.4E-23 1.2E-27 179.4 12.3 103 47-160 3-105 (106)
12 cd07281 PX_SNX1 The phosphoino 99.9 5.4E-23 1.2E-27 183.0 12.2 111 49-161 2-124 (124)
13 cd06898 PX_SNX10 The phosphoin 99.9 8.9E-23 1.9E-27 179.7 13.3 109 49-160 3-112 (113)
14 cd07301 PX_SNX21 The phosphoin 99.9 8.8E-23 1.9E-27 179.6 12.9 110 49-161 2-112 (112)
15 cd07295 PX_Grd19 The phosphoin 99.9 1.2E-22 2.5E-27 180.0 13.1 111 50-162 4-115 (116)
16 cd07300 PX_SNX20 The phosphoin 99.9 1.1E-22 2.5E-27 179.7 12.7 110 50-162 3-113 (114)
17 cd07279 PX_SNX20_21_like The p 99.9 1.1E-22 2.4E-27 177.6 12.3 109 50-161 3-112 (112)
18 cd06859 PX_SNX1_2_like The pho 99.9 8.1E-23 1.8E-27 177.3 11.3 110 50-161 3-114 (114)
19 cd06863 PX_Atg24p The phosphoi 99.9 2E-22 4.3E-27 177.1 13.2 110 48-160 3-117 (118)
20 cd07282 PX_SNX2 The phosphoino 99.9 1.4E-22 3E-27 181.4 12.1 109 50-160 3-123 (124)
21 cd06862 PX_SNX9_18_like The ph 99.9 1.6E-22 3.5E-27 181.6 12.4 108 48-162 1-108 (125)
22 cd06878 PX_SNX25 The phosphoin 99.9 2E-22 4.4E-27 181.0 12.9 110 48-160 9-126 (127)
23 cd06860 PX_SNX7_30_like The ph 99.9 2.2E-22 4.7E-27 177.5 12.8 109 50-160 3-115 (116)
24 cd06864 PX_SNX4 The phosphoino 99.9 2.1E-22 4.5E-27 181.4 12.9 112 50-161 3-129 (129)
25 cd06872 PX_SNX19_like_plant Th 99.9 1.8E-22 3.9E-27 176.6 11.8 103 49-159 2-105 (107)
26 cd06876 PX_MDM1p The phosphoin 99.9 3.1E-22 6.7E-27 179.9 13.4 111 48-159 20-132 (133)
27 cd06881 PX_SNX15_like The phos 99.9 2.2E-22 4.8E-27 177.7 12.2 109 46-159 1-115 (117)
28 cd06894 PX_SNX3_like The phosp 99.9 2.3E-22 4.9E-27 179.8 12.2 111 49-162 3-122 (123)
29 cd07293 PX_SNX3 The phosphoino 99.9 4.1E-22 8.9E-27 178.4 12.9 110 49-161 3-121 (123)
30 cd06867 PX_SNX41_42 The phosph 99.9 2.5E-22 5.5E-27 175.3 11.2 101 50-160 2-111 (112)
31 cd06875 PX_IRAS The phosphoino 99.9 3.9E-22 8.6E-27 176.5 12.5 104 48-163 4-107 (116)
32 cd07283 PX_SNX30 The phosphoin 99.9 4.7E-22 1E-26 176.5 12.7 98 63-160 14-115 (116)
33 cd06880 PX_SNX22 The phosphoin 99.9 5.6E-22 1.2E-26 173.7 12.6 105 48-164 1-105 (110)
34 cd07286 PX_SNX18 The phosphoin 99.9 4.7E-22 1E-26 179.9 12.0 105 50-161 3-107 (127)
35 cd07294 PX_SNX12 The phosphoin 99.9 7.3E-22 1.6E-26 179.2 13.2 117 48-167 4-129 (132)
36 cd06893 PX_SNX19 The phosphoin 99.9 4.7E-22 1E-26 180.3 11.4 111 50-160 2-131 (132)
37 cd07284 PX_SNX7 The phosphoino 99.9 1.8E-21 3.8E-26 173.0 12.7 98 63-160 14-115 (116)
38 cd06885 PX_SNX17_31 The phosph 99.9 1.7E-21 3.7E-26 169.4 11.1 100 50-159 2-101 (104)
39 cd06866 PX_SNX8_Mvp1p_like The 99.9 4.1E-21 8.9E-26 167.2 11.5 89 65-160 16-104 (105)
40 cd07277 PX_RUN The phosphoinos 99.9 4.7E-21 1E-25 170.8 11.8 107 49-163 2-108 (118)
41 cd07285 PX_SNX9 The phosphoino 99.8 6.1E-21 1.3E-25 172.6 12.1 95 62-163 15-110 (126)
42 cd07288 PX_SNX15 The phosphoin 99.8 6.4E-21 1.4E-25 169.8 11.9 97 64-160 14-117 (118)
43 cd07287 PX_RPK118_like The pho 99.8 1.4E-20 3.1E-25 167.9 11.8 97 64-160 14-117 (118)
44 cd06871 PX_MONaKA The phosphoi 99.8 8.3E-20 1.8E-24 162.6 11.4 96 63-163 17-112 (120)
45 cd06883 PX_PI3K_C2 The phospho 99.8 1.1E-19 2.4E-24 159.2 11.9 105 50-160 2-108 (109)
46 cd06093 PX_domain The Phox Hom 99.8 2.8E-19 6.1E-24 147.7 12.9 105 50-160 2-106 (106)
47 smart00312 PX PhoX homologous 99.8 1.6E-19 3.6E-24 151.3 11.1 93 64-159 9-105 (105)
48 cd06882 PX_p40phox The phospho 99.8 1.9E-19 4.2E-24 161.1 12.1 107 48-162 4-119 (123)
49 cd06869 PX_UP2_fungi The phosp 99.8 2.4E-19 5.2E-24 160.1 11.1 91 63-161 29-119 (119)
50 cd06874 PX_KIF16B_SNX23 The ph 99.8 3.2E-19 6.9E-24 161.0 12.0 99 49-154 2-101 (127)
51 cd06891 PX_Vps17p The phosphoi 99.8 7.9E-19 1.7E-23 161.5 13.6 121 36-161 18-140 (140)
52 cd06884 PX_PI3K_C2_68D The pho 99.8 4.7E-18 1E-22 150.3 10.8 94 63-159 14-109 (111)
53 PF00787 PX: PX domain; Inter 99.7 8.2E-18 1.8E-22 140.4 10.9 108 47-161 3-113 (113)
54 KOG2527 Sorting nexin SNX11 [I 99.7 5.2E-18 1.1E-22 155.0 6.9 115 48-164 18-133 (144)
55 cd06895 PX_PLD The phosphoinos 99.7 5.2E-17 1.1E-21 149.1 12.0 108 48-161 4-140 (140)
56 cd06892 PX_SNX5_like The phosp 99.7 5.1E-17 1.1E-21 149.8 9.9 108 48-161 3-141 (141)
57 cd07289 PX_PI3K_C2_alpha The p 99.7 1.6E-16 3.5E-21 140.9 11.5 104 50-159 2-107 (109)
58 cd06890 PX_Bem1p The phosphoin 99.7 2.4E-16 5.1E-21 138.7 11.7 101 49-160 2-111 (112)
59 cd07290 PX_PI3K_C2_beta The ph 99.7 2.3E-16 5E-21 139.9 11.1 93 64-159 13-107 (109)
60 cd07291 PX_SNX5 The phosphoino 99.7 1.2E-16 2.7E-21 147.0 9.4 108 48-161 3-141 (141)
61 cd06887 PX_p47phox The phospho 99.7 2.4E-16 5.2E-21 141.2 10.8 93 63-161 14-116 (118)
62 cd07292 PX_SNX6 The phosphoino 99.7 3.7E-16 8E-21 143.8 9.7 108 47-160 2-140 (141)
63 cd06888 PX_FISH The phosphoino 99.6 8.6E-16 1.9E-20 137.7 10.8 94 63-160 14-118 (119)
64 KOG2273 Membrane coat complex 99.6 6.7E-15 1.5E-19 156.3 11.9 115 48-163 110-229 (503)
65 cd07296 PX_PLD1 The phosphoino 99.5 4.1E-14 8.8E-19 129.9 10.9 107 48-160 4-134 (135)
66 KOG2528 Sorting nexin SNX9/SH3 99.5 1.2E-13 2.7E-18 145.6 11.8 92 63-161 201-292 (490)
67 cd06889 PX_NoxO1 The phosphoin 99.3 5.1E-12 1.1E-16 114.3 10.4 93 64-160 16-120 (121)
68 KOG1259 Nischarin, modulator o 99.3 7.1E-12 1.5E-16 129.2 9.0 94 63-163 23-117 (490)
69 cd06896 PX_PI3K_C2_gamma The p 99.2 4E-11 8.7E-16 105.4 8.9 87 68-160 13-100 (101)
70 COG5391 Phox homology (PX) dom 99.2 3.9E-11 8.4E-16 130.2 8.5 103 49-152 134-244 (524)
71 KOG3784 Sorting nexin protein 98.9 1.9E-09 4.1E-14 113.2 7.7 89 63-160 13-101 (407)
72 cd07297 PX_PLD2 The phosphoino 98.8 1.5E-08 3.2E-13 92.9 9.3 103 48-160 4-129 (130)
73 KOG2101 Intermediate filament- 98.4 1.1E-06 2.3E-11 90.6 8.1 93 63-155 131-232 (362)
74 KOG0905 Phosphoinositide 3-kin 98.2 4E-06 8.7E-11 97.4 8.5 114 42-161 1370-1485(1639)
75 cd07298 PX_RICS The phosphoino 97.4 0.00059 1.3E-08 61.9 8.0 84 66-160 26-115 (115)
76 KOG4773 NADPH oxidase [Energy 97.2 0.00041 8.9E-09 73.0 4.8 90 67-161 38-137 (386)
77 cd07278 PX_RICS_like The phosp 96.0 0.064 1.4E-06 48.9 9.6 88 64-160 23-114 (114)
78 cd07299 PX_TCGAP The phosphoin 95.9 0.031 6.8E-07 50.7 7.4 88 64-160 22-113 (113)
79 KOG1660 Sorting nexin SNX6/TFA 94.7 0.042 9.2E-07 58.4 5.1 94 67-161 39-163 (399)
80 PLN02866 phospholipase D 87.4 1.4 3.1E-05 52.7 7.3 92 67-163 32-173 (1068)
81 PF04156 IncA: IncA protein; 86.3 3.8 8.3E-05 38.7 8.3 96 396-492 91-186 (191)
82 PF13801 Metal_resist: Heavy-m 86.2 1.1 2.3E-05 37.8 4.1 85 387-471 39-123 (125)
83 PF15619 Lebercilin: Ciliary p 85.6 4.4 9.5E-05 39.9 8.6 87 397-487 33-141 (194)
84 PF08317 Spc7: Spc7 kinetochor 80.3 11 0.00025 39.2 9.6 120 398-518 147-274 (325)
85 PF10046 BLOC1_2: Biogenesis o 68.1 41 0.00088 29.6 8.6 89 399-489 6-98 (99)
86 KOG1103 Predicted coiled-coil 61.0 25 0.00054 38.4 7.0 75 391-478 87-164 (561)
87 PRK10884 SH3 domain-containing 60.9 25 0.00053 35.1 6.6 31 400-430 93-123 (206)
88 PF12128 DUF3584: Protein of u 60.9 39 0.00084 41.3 9.4 103 412-514 340-458 (1201)
89 PF07445 priB_priC: Primosomal 57.8 29 0.00064 33.5 6.4 90 394-490 78-171 (173)
90 PF07888 CALCOCO1: Calcium bin 57.1 64 0.0014 36.9 9.6 102 382-484 127-240 (546)
91 TIGR01069 mutS2 MutS2 family p 55.7 54 0.0012 38.5 9.1 54 400-453 497-550 (771)
92 PRK09039 hypothetical protein; 55.0 45 0.00098 35.4 7.7 26 469-494 142-167 (343)
93 KOG0239 Kinesin (KAR3 subfamil 54.0 67 0.0014 37.4 9.4 96 387-483 169-274 (670)
94 COG1196 Smc Chromosome segrega 51.5 63 0.0014 39.4 9.1 46 403-448 761-806 (1163)
95 PF05266 DUF724: Protein of un 49.5 84 0.0018 31.0 8.1 36 395-431 68-103 (190)
96 PF02601 Exonuc_VII_L: Exonucl 49.2 91 0.002 32.0 8.7 70 399-470 157-226 (319)
97 PF14942 Muted: Organelle biog 48.7 1.2E+02 0.0026 28.9 8.7 88 398-487 57-145 (145)
98 PHA02562 46 endonuclease subun 47.7 60 0.0013 35.4 7.5 73 394-466 331-403 (562)
99 PF07889 DUF1664: Protein of u 46.6 1.4E+02 0.003 28.1 8.5 94 398-492 30-124 (126)
100 PF08580 KAR9: Yeast cortical 45.6 50 0.0011 38.5 6.7 58 433-490 96-157 (683)
101 PF13935 Ead_Ea22: Ead/Ea22-li 45.5 48 0.001 30.8 5.5 34 431-464 93-127 (139)
102 TIGR02168 SMC_prok_B chromosom 44.9 74 0.0016 37.1 8.1 32 459-490 903-934 (1179)
103 PF10805 DUF2730: Protein of u 44.7 40 0.00087 30.1 4.7 69 401-490 23-91 (106)
104 PF09730 BicD: Microtubule-ass 44.6 31 0.00068 40.4 5.0 63 423-493 21-84 (717)
105 PF09789 DUF2353: Uncharacteri 44.0 43 0.00094 35.7 5.5 99 391-499 63-161 (319)
106 PF11559 ADIP: Afadin- and alp 44.0 86 0.0019 28.9 6.9 89 405-497 46-147 (151)
107 smart00787 Spc7 Spc7 kinetocho 43.8 1.6E+02 0.0035 31.2 9.6 115 401-518 145-269 (312)
108 PF09036 Bcr-Abl_Oligo: Bcr-Ab 43.6 22 0.00048 30.9 2.7 47 422-470 14-60 (79)
109 cd07596 BAR_SNX The Bin/Amphip 43.5 83 0.0018 29.4 6.8 84 395-481 112-195 (218)
110 PRK04778 septation ring format 42.5 51 0.0011 37.1 6.1 93 396-489 306-401 (569)
111 PF10186 Atg14: UV radiation r 42.2 1.5E+02 0.0032 29.3 8.7 87 388-479 12-106 (302)
112 PF10473 CENP-F_leu_zip: Leuci 42.1 1.8E+02 0.004 27.7 8.8 55 431-486 62-116 (140)
113 PF03082 MAGSP: Male accessory 41.6 45 0.00098 34.2 4.9 65 389-453 111-184 (264)
114 PF00261 Tropomyosin: Tropomyo 41.5 83 0.0018 31.4 6.8 87 402-488 10-116 (237)
115 PF06637 PV-1: PV-1 protein (P 41.3 1E+02 0.0023 34.0 7.8 82 423-506 151-244 (442)
116 PF03962 Mnd1: Mnd1 family; I 40.2 58 0.0013 31.9 5.4 47 384-430 53-99 (188)
117 PF13851 GAS: Growth-arrest sp 40.0 1.9E+02 0.004 28.7 8.9 90 396-486 30-122 (201)
118 PF05010 TACC: Transforming ac 39.8 1.2E+02 0.0025 30.6 7.5 61 435-495 125-194 (207)
119 PF09766 FimP: Fms-interacting 39.4 76 0.0016 33.9 6.5 85 418-510 91-176 (355)
120 TIGR02977 phageshock_pspA phag 38.6 1.8E+02 0.0039 28.8 8.6 90 398-490 29-132 (219)
121 PRK00286 xseA exodeoxyribonucl 38.3 1E+02 0.0022 33.3 7.3 65 399-468 274-338 (438)
122 cd07622 BAR_SNX4 The Bin/Amphi 37.5 49 0.0011 32.7 4.4 46 420-467 119-164 (201)
123 PF10267 Tmemb_cc2: Predicted 37.0 3.5E+02 0.0076 29.9 11.1 86 396-484 215-318 (395)
124 PF09755 DUF2046: Uncharacteri 36.7 1.8E+02 0.0039 31.2 8.7 90 401-491 78-176 (310)
125 PRK00409 recombination and DNA 36.4 1.3E+02 0.0027 35.6 8.2 31 400-430 502-532 (782)
126 PRK11637 AmiB activator; Provi 35.6 1E+02 0.0022 33.2 6.8 46 458-504 90-135 (428)
127 PF05546 She9_MDM33: She9 / Md 35.1 1.5E+02 0.0033 30.1 7.5 122 395-524 4-163 (207)
128 TIGR02168 SMC_prok_B chromosom 33.6 1.7E+02 0.0037 34.3 8.6 18 397-414 681-698 (1179)
129 PF08388 GIIM: Group II intron 32.9 50 0.0011 26.8 3.1 30 398-427 1-32 (80)
130 PF04012 PspA_IM30: PspA/IM30 32.5 2.2E+02 0.0047 27.8 8.0 59 436-494 66-135 (221)
131 TIGR03752 conj_TIGR03752 integ 31.8 1.3E+02 0.0028 34.0 6.9 62 391-470 57-118 (472)
132 KOG1451 Oligophrenin-1 and rel 31.2 33 0.00071 39.7 2.3 74 442-515 214-289 (812)
133 PF07888 CALCOCO1: Calcium bin 31.1 2.1E+02 0.0044 33.0 8.4 71 420-490 229-302 (546)
134 PF05266 DUF724: Protein of un 31.0 3.4E+02 0.0074 26.9 9.1 90 395-489 92-184 (190)
135 PRK07720 fliJ flagellar biosyn 30.7 4.1E+02 0.009 24.3 9.1 95 396-490 5-111 (146)
136 TIGR03007 pepcterm_ChnLen poly 30.4 2.3E+02 0.0051 30.7 8.6 36 388-424 193-228 (498)
137 COG4026 Uncharacterized protei 30.2 1.5E+02 0.0032 31.0 6.5 91 402-494 121-214 (290)
138 PRK02224 chromosome segregatio 30.0 1.7E+02 0.0037 34.1 7.9 41 389-429 468-511 (880)
139 PF02050 FliJ: Flagellar FliJ 30.0 3.2E+02 0.007 22.7 9.3 91 397-490 2-92 (123)
140 PRK04863 mukB cell division pr 29.9 1.7E+02 0.0036 37.4 8.2 98 388-488 275-372 (1486)
141 PF11172 DUF2959: Protein of u 29.5 49 0.0011 33.4 3.0 37 395-431 157-194 (201)
142 COG2825 HlpA Outer membrane pr 29.4 2.1E+02 0.0046 27.7 7.2 92 398-501 32-127 (170)
143 smart00806 AIP3 Actin interact 29.0 1.4E+02 0.003 33.4 6.5 96 393-491 155-277 (426)
144 PF07798 DUF1640: Protein of u 28.7 1.2E+02 0.0026 29.0 5.4 64 402-471 75-157 (177)
145 PF00038 Filament: Intermediat 28.7 2.8E+02 0.006 28.2 8.3 18 465-482 270-287 (312)
146 PF05529 Bap31: B-cell recepto 28.6 1.9E+02 0.0041 27.7 6.8 66 404-484 122-188 (192)
147 COG4477 EzrA Negative regulato 28.1 82 0.0018 36.1 4.7 70 394-463 415-503 (570)
148 PF05911 DUF869: Plant protein 27.6 2.6E+02 0.0056 33.4 8.7 62 426-495 657-718 (769)
149 PF04111 APG6: Autophagy prote 27.4 82 0.0018 33.1 4.4 58 400-458 9-66 (314)
150 COG2433 Uncharacterized conser 27.2 1.4E+02 0.0029 34.9 6.2 72 438-514 453-529 (652)
151 KOG2077 JNK/SAPK-associated pr 27.2 1.1E+02 0.0024 35.6 5.5 87 399-488 310-423 (832)
152 PF11559 ADIP: Afadin- and alp 26.9 4.6E+02 0.0099 24.2 8.7 77 417-494 41-117 (151)
153 PF12718 Tropomyosin_1: Tropom 26.7 5E+02 0.011 24.4 9.0 91 398-488 40-139 (143)
154 PRK09343 prefoldin subunit bet 26.7 85 0.0018 28.6 3.8 37 412-451 65-101 (121)
155 COG1579 Zn-ribbon protein, pos 26.3 2.9E+02 0.0063 28.6 7.9 28 401-428 39-69 (239)
156 PF09032 Siah-Interact_N: Siah 26.2 53 0.0011 28.6 2.3 44 406-449 2-47 (79)
157 KOG1899 LAR transmembrane tyro 26.2 1.7E+02 0.0037 34.5 6.8 55 404-461 108-168 (861)
158 PF04799 Fzo_mitofusin: fzo-li 26.2 71 0.0015 31.5 3.4 43 397-439 106-148 (171)
159 PHA02562 46 endonuclease subun 25.6 1.5E+02 0.0032 32.4 6.1 38 413-450 315-352 (562)
160 PF15145 DUF4577: Domain of un 25.4 69 0.0015 30.0 3.0 37 388-428 82-125 (128)
161 TIGR02169 SMC_prok_A chromosom 24.9 3.3E+02 0.0072 32.2 9.1 23 463-485 475-497 (1164)
162 PF03962 Mnd1: Mnd1 family; I 24.7 2.2E+02 0.0049 27.9 6.6 88 417-516 68-167 (188)
163 PF06160 EzrA: Septation ring 24.0 1.3E+02 0.0028 34.0 5.4 68 396-463 417-500 (560)
164 TIGR00237 xseA exodeoxyribonuc 23.9 2.6E+02 0.0056 30.7 7.5 66 399-469 269-334 (432)
165 PF03915 AIP3: Actin interacti 23.7 1E+02 0.0022 34.2 4.4 57 431-490 216-272 (424)
166 PF10372 YojJ: Bacterial membr 23.5 63 0.0014 27.6 2.2 53 423-486 5-57 (70)
167 TIGR03185 DNA_S_dndD DNA sulfu 23.4 1.7E+02 0.0038 33.3 6.3 27 468-494 266-292 (650)
168 PF02601 Exonuc_VII_L: Exonucl 23.2 2E+02 0.0044 29.5 6.2 19 469-487 211-229 (319)
169 PF08317 Spc7: Spc7 kinetochor 23.0 3.1E+02 0.0068 28.7 7.7 74 402-482 211-284 (325)
170 TIGR01010 BexC_CtrB_KpsE polys 22.8 1.4E+02 0.003 31.2 5.0 74 416-490 156-233 (362)
171 KOG0971 Microtubule-associated 22.8 1.3E+02 0.0029 36.7 5.2 60 412-488 223-282 (1243)
172 PF10211 Ax_dynein_light: Axon 22.6 2.9E+02 0.0064 27.0 6.9 66 413-488 122-187 (189)
173 PF14584 DUF4446: Protein of u 22.4 1.6E+02 0.0035 28.2 5.0 43 411-456 39-81 (151)
174 KOG1329 Phospholipase D1 [Lipi 22.0 74 0.0016 38.2 3.1 91 68-163 67-166 (887)
175 PF10186 Atg14: UV radiation r 21.9 5.4E+02 0.012 25.4 8.8 12 430-441 97-108 (302)
176 PRK10780 periplasmic chaperone 21.9 2.1E+02 0.0045 27.1 5.5 79 414-495 29-118 (165)
177 PF04849 HAP1_N: HAP1 N-termin 21.5 2.1E+02 0.0046 30.6 6.0 57 432-489 238-294 (306)
178 KOG3850 Predicted membrane pro 21.3 7.4E+02 0.016 27.8 10.1 136 391-528 254-426 (455)
179 PF14980 TIP39: TIP39 peptide 21.2 81 0.0018 25.5 2.2 21 124-144 20-48 (51)
180 PTZ00464 SNF-7-like protein; P 21.2 1.6E+02 0.0035 29.6 4.9 41 446-486 58-100 (211)
181 KOG0432 Valyl-tRNA synthetase 21.1 1.6E+02 0.0034 35.8 5.5 67 383-449 913-986 (995)
182 PF03954 Lectin_N: Hepatic lec 20.8 1.4E+02 0.003 28.7 4.1 59 393-454 55-113 (138)
183 KOG0978 E3 ubiquitin ligase in 20.7 5.1E+02 0.011 30.8 9.3 97 389-489 385-514 (698)
184 TIGR01010 BexC_CtrB_KpsE polys 20.6 1.3E+02 0.0028 31.5 4.3 47 436-482 243-289 (362)
185 PRK12751 cpxP periplasmic stre 20.6 2.1E+02 0.0046 27.8 5.4 64 388-452 55-123 (162)
186 PF09304 Cortex-I_coil: Cortex 20.5 6.9E+02 0.015 23.2 8.6 76 396-472 12-94 (107)
187 KOG0241 Kinesin-like protein [ 20.5 58 0.0013 39.8 1.9 19 420-438 1315-1333(1714)
188 PF15233 SYCE1: Synaptonemal c 20.4 4.2E+02 0.0091 25.4 7.1 92 415-507 7-121 (134)
189 PRK04863 mukB cell division pr 20.4 4.4E+02 0.0096 33.8 9.3 12 504-515 420-431 (1486)
190 PLN02939 transferase, transfer 20.2 1.9E+02 0.0041 35.4 5.9 84 388-489 259-342 (977)
No 1
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.96 E-value=4.9e-29 Score=228.09 Aligned_cols=114 Identities=84% Similarity=1.289 Sum_probs=109.0
Q ss_pred EEEEeCCeEeccCCCCCCCeE------------------------EEEEEEeeecCCCCCcceEEEccchhHHHHHHHHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVV------------------------FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLK 103 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yV------------------------vY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLk 103 (533)
|||.||||.++++++++++.+ +|.|+|++++|++....|.|.||||||.+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~ 80 (138)
T cd06879 1 YCVFIPSWVVLPKSKESDGKAINPKVGNMSVVYSEYQPLNNAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLK 80 (138)
T ss_pred CcEeccceeEeccccCCCCccccccccccccceeeeecccCCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHH
Confidence 799999999999988888766 99999999999998899999999999999999999
Q ss_pred HHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 104 KAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 104 k~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
+.||...+||+|+|+++++++++|||+||.+||+||++|+++|.+++|+.|++||+++
T Consensus 81 ~~~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLele 138 (138)
T cd06879 81 KLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLELE 138 (138)
T ss_pred HHCCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCCC
Confidence 9999888999999999999999999999999999999999999999999999999985
No 2
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.92 E-value=1.8e-24 Score=192.25 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=99.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeec---CCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS---PEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS 124 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqs---Peg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s 124 (533)
|.|+||+..++.+..+++.|++|.|.|.... +......|.|.||||||.+||.+|++.||...+|+||+|++++.++
T Consensus 3 ~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~ 82 (119)
T cd06877 3 WRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKS 82 (119)
T ss_pred ceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCC
Confidence 6899999987654346788999999996421 2223579999999999999999999999988889999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 125 ~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
++|||+||.+||.||+.|+.+|.++.|+.|++||+.
T Consensus 83 ~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~ 118 (119)
T cd06877 83 YEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSP 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCC
Confidence 999999999999999999999999999999999975
No 3
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.91 E-value=3.4e-24 Score=187.52 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=97.5
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFL 128 (533)
.|.|.....+++ ..++||+|.|.+....+++....|.|.||||||.+||++|+..||...+|++|+|.++++++++||
T Consensus 2 ~i~V~dp~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fi 79 (112)
T cd06861 2 EITVGDPHKVGD--LTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFV 79 (112)
T ss_pred EEEEcCcceecC--CccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHH
Confidence 355555554433 557899999999776666667899999999999999999999999998999999999888899999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 129 EERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
|+||.+||.||+.|+.||.+++|++|+.||+.+
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 80 EQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 999999999999999999999999999999853
No 4
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.91 E-value=5.5e-24 Score=187.97 Aligned_cols=110 Identities=23% Similarity=0.381 Sum_probs=97.7
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---CCCCCCCCcccC---
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---NIPPAPPKGLLR--- 121 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~---~LPpLPpK~lfr--- 121 (533)
-.|.|++|..+....++++||+|.|+|....+ ....|.|.||||||.+||+.|++.||.. .+|+||+|++++
T Consensus 3 ~~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~ 80 (120)
T cd07280 3 TDVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSR 80 (120)
T ss_pred eEEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCccccccc
Confidence 36899999987554447899999999965443 2379999999999999999999999976 789999998877
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccC
Q 009484 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (533)
Q Consensus 122 -~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLE 159 (533)
+++++|||+||.+||.||+.|+.+|.+++|++|++||+
T Consensus 81 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 81 VNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence 67899999999999999999999999999999999997
No 5
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.90 E-value=2.4e-23 Score=184.62 Aligned_cols=99 Identities=27% Similarity=0.471 Sum_probs=89.7
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWM 139 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr---~~s~eFLEERR~~LE~YL 139 (533)
++++||+|.|.+....++.....|.|.||||||.+||.+|++.||...+|++|+|.++. +++++|||+||.+||.||
T Consensus 19 ~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~fie~Rr~~Le~fL 98 (120)
T cd06865 19 GGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYL 98 (120)
T ss_pred CCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccccCCHHHHHHHHHHHHHHH
Confidence 45799999999976665666789999999999999999999999999999999998764 258999999999999999
Q ss_pred HHHhcccccCCCHHHHhccCcc
Q 009484 140 TKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 140 qkLLs~P~Ls~S~~V~eFLELd 161 (533)
+.|+.||.+++|++|+.||+.+
T Consensus 99 ~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06865 99 NRLAAHPVIGLSDELRVFLTLQ 120 (120)
T ss_pred HHHHcCceeecCcHHHHhccCC
Confidence 9999999999999999999864
No 6
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.90 E-value=1.9e-23 Score=182.05 Aligned_cols=106 Identities=24% Similarity=0.428 Sum_probs=93.8
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA 126 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr-~~s~e 126 (533)
+.|.|.+|.++.+ .++||+|.|+|... . ...|.|.||||||.+||.+|++.||. .+|+||+|++++ +.+++
T Consensus 4 ~~~~i~~~~~~~~---~~~~~vY~I~v~~~--~--~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~~~~~~ 75 (110)
T cd07276 4 IRPPILGYEVMEE---RARFTVYKIRVENK--V--GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKDNFDPD 75 (110)
T ss_pred ccceeeeEEEeec---CCCeEEEEEEEEEC--C--CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecccCCHH
Confidence 5789999987543 46899999999543 2 36999999999999999999999997 578999998776 47899
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
||++||.+||.||+.|+++|.+++|++|++||+++
T Consensus 76 fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 76 FLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999999999975
No 7
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.90 E-value=4.1e-23 Score=183.11 Aligned_cols=112 Identities=27% Similarity=0.376 Sum_probs=100.3
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 009484 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (533)
Q Consensus 47 Sy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~e 126 (533)
-.+++|+++..+.+ +++.||+|.|.|....+++....|.|.||||||.+||++|++.||...+|+||+|.++++.+++
T Consensus 4 ~~~~~i~~~~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~ 81 (120)
T cd06873 4 KLTAVIINTGIVKE--HGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRA 81 (120)
T ss_pred EEEEEEeccEEEcc--CCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHH
Confidence 46899999998765 6788999999997766655568999999999999999999999998888999999988888899
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCH----HHHhccCc
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSV----SVASFLEL 160 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~----~V~eFLEL 160 (533)
|||+||.+||.||+.|+++|.+++++ .|.+||+.
T Consensus 82 ~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 82 FLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 99999999999999999999999994 67788864
No 8
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.90 E-value=5e-23 Score=177.07 Aligned_cols=103 Identities=32% Similarity=0.494 Sum_probs=93.9
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--CCCHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR--MKSRA 126 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr--~~s~e 126 (533)
.|+||++... +++|++|.|.|... ...|.|.||||||.+||++|++.+|...+|+||+|.+++ +++++
T Consensus 2 ~v~ip~~~~~-----~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~ 71 (108)
T cd06897 2 EISIPTTSVS-----PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPK 71 (108)
T ss_pred eEEcCCeEEc-----CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHH
Confidence 5899999874 46799999999543 469999999999999999999999988889999998877 78899
Q ss_pred HHHHHHHHHHHHHHHHhccc--ccCCCHHHHhccCcc
Q 009484 127 LLEERRCSLEEWMTKLLSDI--DLSRSVSVASFLELE 161 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P--~Ls~S~~V~eFLELd 161 (533)
|||+||.+||.||+.|+++| .+++|++|++||+++
T Consensus 72 ~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 72 LVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 99999999999999999999 999999999999874
No 9
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.89 E-value=3.6e-23 Score=180.07 Aligned_cols=105 Identities=30% Similarity=0.484 Sum_probs=93.1
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRAL 127 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr-~~s~eF 127 (533)
.|+||++..+.+ .++.|++|.|+|... ...|.|.||||||.+||++|++.||.. .++||+|++++ +.+++|
T Consensus 4 ~~~i~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~v~RRYseF~~L~~~L~~~~~~~-~~~lP~K~~~~~~~~~~~ 75 (109)
T cd06870 4 SVSIPSSDEDRE--KKKRFTVYKVVVSVG-----RSSWFVFRRYAEFDKLYESLKKQFPAS-NLKIPGKRLFGNNFDPDF 75 (109)
T ss_pred ceeeccceeecc--CCCCeEEEEEEEEEC-----CeEEEEEeehHHHHHHHHHHHHHCccc-CcCCCCCcccccCCCHHH
Confidence 488999886544 567899999999532 369999999999999999999999976 44799999998 778999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
|++||.+||.||+.|+++|.+++|+.|++||.++
T Consensus 76 ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 76 IKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 9999999999999999999999999999999874
No 10
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.89 E-value=5e-23 Score=183.63 Aligned_cols=110 Identities=23% Similarity=0.413 Sum_probs=94.8
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCC--------CcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGI--------TTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL 120 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~--------~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf 120 (533)
.|.||++..+... +.++||+|.|.|.+..+.+. ...|.|.||||||.+||+.|++.||...+||||+|.++
T Consensus 3 ~v~vp~~~~~~~~-~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 3 DLTVPEYQEIRGK-TSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred ceecCCceeecCC-CCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 5889999875432 56789999999864433221 13799999999999999999999999889999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 121 r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
+ +++||++||.+||.||++|++||.+++|+.|..||.++
T Consensus 82 ~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 6 78999999999999999999999999999999999874
No 11
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.89 E-value=5.4e-23 Score=179.43 Aligned_cols=103 Identities=27% Similarity=0.422 Sum_probs=92.9
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 009484 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (533)
Q Consensus 47 Sy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~e 126 (533)
+..|+||++..+.+ ++++||+|.|.+. ..|.|.||||||.+||++|++.||...+|+||+|++++ ++++
T Consensus 3 ~~~i~Ip~~~~~~~--~~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~ 71 (106)
T cd06886 3 SVPISIPDYKHVEQ--NGEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-LSEQ 71 (106)
T ss_pred cceEecCCcceEcC--CCCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-CCHH
Confidence 57899999986654 3568999999882 37999999999999999999999998899999999886 4679
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
|||+||.+||.||+.|+++|+|++|+.|++||+-
T Consensus 72 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 72 QLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999999999974
No 12
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.89 E-value=5.4e-23 Score=183.04 Aligned_cols=111 Identities=30% Similarity=0.438 Sum_probs=94.8
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--CCCCCCCCCcccCC----
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--KNIPPAPPKGLLRM---- 122 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--~~LPpLPpK~lfr~---- 122 (533)
.|.|.......+ +.++||+|.|.+.+..+......|.|.||||||.+||.+|++.|+. ..+||+|+|+++++
T Consensus 2 ~i~V~~p~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~ 79 (124)
T cd07281 2 KVSITDPEKIGD--GMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 79 (124)
T ss_pred EEEEcCCeEeeC--CcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhh
Confidence 366777766544 5678999999997655555567999999999999999999999973 46899999987653
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 123 ------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 123 ------~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
++++|||+||++||.||++|++||.|++|+.|++||+.+
T Consensus 80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~~ 124 (124)
T cd07281 80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEKE 124 (124)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCCC
Confidence 378999999999999999999999999999999999864
No 13
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.89 E-value=8.9e-23 Score=179.67 Aligned_cols=109 Identities=25% Similarity=0.281 Sum_probs=93.6
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RAL 127 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s-~eF 127 (533)
.|..|.... + .+.++||+|.|.+.+..+......|.|.||||||.+||.+|++.+|...+|+||+|+++++++ ++|
T Consensus 3 ~V~dP~~~~--~-~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~f 79 (113)
T cd06898 3 EVRDPRTHK--E-DDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGF 79 (113)
T ss_pred EEeCCcEec--C-CCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHH
Confidence 455555543 1 146689999999976555444578999999999999999999999988899999999888766 999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
||+||++||.||+.|+.||.|++++.|+.||+.
T Consensus 80 ie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 80 IEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 999999999999999999999999999999975
No 14
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.89 E-value=8.8e-23 Score=179.64 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=94.6
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCC-CCCCCCcccCCCCHHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNI-PPAPPKGLLRMKSRAL 127 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~L-PpLPpK~lfr~~s~eF 127 (533)
.|.|+++..+.+ +.++||+|+|.|.. .+......|.|.||||||.+||+.|++.||.... ++||+|+++++++++|
T Consensus 2 ~~~v~~~~~~~~--~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~ 78 (112)
T cd07301 2 LFEVTDANVVQD--AHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAET 78 (112)
T ss_pred EEEECCCeEecc--CCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHH
Confidence 467888877655 56789999999952 2223357899999999999999999999997533 5899999888899999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
||+||.+||.||++|+++|.+++|+.|++||.++
T Consensus 79 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l~ 112 (112)
T cd07301 79 IAKRSRAFEQFLCHLHSLPELRASPAFLEFFYLR 112 (112)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCCC
Confidence 9999999999999999999999999999999874
No 15
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.89 E-value=1.2e-22 Score=180.02 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=95.2
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLE 129 (533)
|.|.......+ +.+.|++|.|.+.+..+......|.|.||||||.+||.+|++.||...+||+|+|.+++.++++|||
T Consensus 4 i~V~dP~~~~~--g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~ie 81 (116)
T cd07295 4 IEVRNPKTHGI--GRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVIE 81 (116)
T ss_pred EEEeCCcEecC--CCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHHH
Confidence 44444443333 5678999999986665555567899999999999999999999999899999999988888899999
Q ss_pred HHHHHHHHHHHHHhcccccC-CCHHHHhccCcch
Q 009484 130 ERRCSLEEWMTKLLSDIDLS-RSVSVASFLELEA 162 (533)
Q Consensus 130 ERR~~LE~YLqkLLs~P~Ls-~S~~V~eFLELd~ 162 (533)
+||++||.||++|++||.|+ +++.|++||+.+.
T Consensus 82 ~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 82 ERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 99999999999999999998 6999999999874
No 16
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.89 E-value=1.1e-22 Score=179.73 Aligned_cols=110 Identities=27% Similarity=0.330 Sum_probs=95.3
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC-CCCCCCCCcccCCCCHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-NIPPAPPKGLLRMKSRALL 128 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~-~LPpLPpK~lfr~~s~eFL 128 (533)
+.||++..+.. +.++||+|.|.+. +.+......|.|.||||||.+||..|++.|+.. ..|+||+|+++++++++||
T Consensus 3 ~~i~~~~~~~~--~~~~yv~Y~i~~~-~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~i 79 (114)
T cd07300 3 FEIPSARIIEQ--TISKHVVYQIIVI-QTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEII 79 (114)
T ss_pred EEecCceeecc--CCcceEEEEEEEE-EecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHH
Confidence 68999987644 4578999999872 333233579999999999999999999999864 4688999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHhccCcch
Q 009484 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (533)
Q Consensus 129 EERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~ 162 (533)
++||.+||.||+.|+++|.+++|+.|++||..++
T Consensus 80 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 113 (114)
T cd07300 80 AERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE 113 (114)
T ss_pred HHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence 9999999999999999999999999999999874
No 17
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.89 E-value=1.1e-22 Score=177.57 Aligned_cols=109 Identities=27% Similarity=0.339 Sum_probs=94.6
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC-CCCCCCCcccCCCCHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN-IPPAPPKGLLRMKSRALL 128 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~-LPpLPpK~lfr~~s~eFL 128 (533)
..|+++.++.. ++++||+|.|+|.... +.....|.|.||||||.+||..|++.||... .|+||+|.++++++++||
T Consensus 3 ~~i~~~~~~~~--~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~i 79 (112)
T cd07279 3 FEIVSARTVKE--GEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELI 79 (112)
T ss_pred EEeccCeEEcC--CCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHHH
Confidence 46888887655 5678999999996443 2234689999999999999999999999754 578999999998899999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 129 EERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
++||.+||.||+.|+++|.+++|+.|++||..+
T Consensus 80 e~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd07279 80 AERSRAFEQFLGHILSIPNLRDSKAFLDFLQGP 112 (112)
T ss_pred HHHHHHHHHHHHHHhCCHhhhcChHHHHHhCCC
Confidence 999999999999999999999999999999853
No 18
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.89 E-value=8.1e-23 Score=177.27 Aligned_cols=110 Identities=25% Similarity=0.456 Sum_probs=94.1
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC--HHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS--RAL 127 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s--~eF 127 (533)
|.|.....+.+ +..+||+|.|.|.+..++.....|.|.||||||.+||+.|++.+|...+|+||+|.+++..+ .+|
T Consensus 3 ~~V~~p~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 3 ISVTDPVKVGD--GMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred EEEeCcceecC--CccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 45555554443 56799999999976555445578999999999999999999999998899999999887665 459
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
||+||.+||.||+.|++||.+++|++|+.||+.+
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 9999999999999999999999999999999764
No 19
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.88 E-value=2e-22 Score=177.13 Aligned_cols=110 Identities=26% Similarity=0.336 Sum_probs=94.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-----CC
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-----RM 122 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf-----r~ 122 (533)
.+|++|.... +.+.++||+|.|.+.+..+.+....|.|.||||||.+||+.|.+.||...+||||+|..+ ++
T Consensus 3 i~V~dP~~~~---~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~ 79 (118)
T cd06863 3 CLVSDPQKEL---DGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDR 79 (118)
T ss_pred EEEeCccccc---CCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccC
Confidence 3566666552 125778999999997666655567899999999999999999999999999999999754 34
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 123 ~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
.+++|||+||++||.||++|+.||.|++|+.|+.||+.
T Consensus 80 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 80 FSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 67999999999999999999999999999999999974
No 20
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.88 E-value=1.4e-22 Score=181.41 Aligned_cols=109 Identities=25% Similarity=0.396 Sum_probs=91.1
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC-----
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM----- 122 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp--~~~LPpLPpK~lfr~----- 122 (533)
|.|.......+ +.++|++|.|.+.+..+......|.|.||||||.+||..|++.|| +..+||+|+|.+++.
T Consensus 3 i~V~dP~~~~~--g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 3 IGVSDPEKVGD--GMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred EEEeCCeEecC--CccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 34444443333 567899999999655555556799999999999999999999997 556899999987653
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 123 -----KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 123 -----~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
++++|||+||.+||.||++|++||.|++|+.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 47899999999999999999999999999999999984
No 21
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.88 E-value=1.6e-22 Score=181.64 Aligned_cols=108 Identities=27% Similarity=0.375 Sum_probs=94.5
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eF 127 (533)
|.|+|.......+..+.++||+|.|.+. . ..|.|.||||||.+||.+|.+.||...+||||+|.++++++++|
T Consensus 1 ~~~~v~~p~~~~~~~g~~~y~~Y~I~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~f 73 (125)
T cd06862 1 YHCTVTNPKKESKFKGLKSFIAYQITPT--H-----TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDF 73 (125)
T ss_pred CEEEEcCccccCCCCCCcCEEEEEEEEe--c-----CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHH
Confidence 3556666554333346789999999983 2 48999999999999999999999998899999999988889999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcch
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~ 162 (533)
||+||.+||.||+.|++||.|++|+.|..||+.+.
T Consensus 74 ie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 74 IEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 99999999999999999999999999999999864
No 22
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.88 E-value=2e-22 Score=180.98 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=93.8
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeec-----CCCCCcceEEEccchhHHHHHHHHHHHCCCC---CCCCCCCCcc
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS-----PEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---NIPPAPPKGL 119 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqs-----Peg~~~~w~V~RRYSDF~~LhekLkk~fp~~---~LPpLPpK~l 119 (533)
|.|.|++...+.+ +++.|++|.|.|.... ++.....|.|.||||||.+||.+|++.||.. .+| +|||++
T Consensus 9 w~~~I~~~~~~~~--~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP-~ppKk~ 85 (127)
T cd06878 9 WRANIQSAEVTVE--DDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELP-SLSKKW 85 (127)
T ss_pred ceEEEeeeEEEcC--CCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCC-CCCccc
Confidence 7899999986544 5678999999997653 1234678999999999999999999999963 344 466766
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 120 fr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
++..+++|||+||.+||+||+.|+++|.+++|++|++||+.
T Consensus 86 ~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 86 FKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 77779999999999999999999999999999999999974
No 23
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.88 E-value=2.2e-22 Score=177.54 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=93.4
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSR 125 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf----r~~s~ 125 (533)
|.|.+.....+ +.++||+|.|.+.+..+......|.|.||||||.+||+.|.+.||...+||||+|..+ +++++
T Consensus 3 v~V~dP~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 3 ITVDNPEKHVT--TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred EEEcCCeeccC--CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 44444443333 4578999999997666655568999999999999999999999999999999999763 45789
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 126 eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
+|||+||++||.||++|+.||.+++|++|+.||+.
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999974
No 24
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.88 E-value=2.1e-22 Score=181.35 Aligned_cols=112 Identities=20% Similarity=0.315 Sum_probs=92.7
Q ss_pred EEeCCeEeccCCCC---CCCeEEEEEEEeeecCC----CCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--
Q 009484 50 VTIPSWVVLPKSRD---SDPVVFYRVQVGLQSPE----GITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-- 120 (533)
Q Consensus 50 VsIPSw~~v~~sk~---sk~yVvY~VqV~iqsPe----g~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf-- 120 (533)
|+|........+.+ +++|++|.|++.+..+. .....|.|.||||||.+||..|.+.||...+||||+|.++
T Consensus 3 i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~ 82 (129)
T cd06864 3 ITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFM 82 (129)
T ss_pred eEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceecc
Confidence 45555544333222 56899999999765443 1257899999999999999999999999889999999753
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 121 ------RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 121 ------r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
++++++|||+||++||.||+.|++||.|++|++|..||..+
T Consensus 83 ~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 83 WQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 35679999999999999999999999999999999999753
No 25
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.88 E-value=1.8e-22 Score=176.57 Aligned_cols=103 Identities=31% Similarity=0.376 Sum_probs=89.3
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-CCCCHHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-RMKSRAL 127 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf-r~~s~eF 127 (533)
.|.|.....+.. +.++|++|.|.|.... ...|.|.||||||.+||.+|++ +|.. .|+||+|+++ ++.+++|
T Consensus 2 ~~~v~~~~~~~~--~~~~y~vY~I~v~~~~----~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~~~~~~f 73 (107)
T cd06872 2 SCRVLGAEIVKS--GSKSFAVYSVAVTDNE----NETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSSSLDGAF 73 (107)
T ss_pred eeEEeeeEEEec--CCccEEEEEEEEEECC----CceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCCCCCHHH
Confidence 578888887654 5678999999995322 3699999999999999999997 5654 5689999887 4678999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccC
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLE 159 (533)
||+||.+||.||+.|+++|.|++|+.|++||.
T Consensus 74 ie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 74 IEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred HHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 99999999999999999999999999999996
No 26
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.88 E-value=3.1e-22 Score=179.90 Aligned_cols=111 Identities=27% Similarity=0.398 Sum_probs=98.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC--CH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK--SR 125 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~--s~ 125 (533)
+.|+||++....+ .++++|++|.|+|....++.....|.|.||||||.+||.+|++.||...+|+||+|.+++.. ++
T Consensus 20 ~~i~I~~~~~~~~-~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~ 98 (133)
T cd06876 20 TRVSIQSYISDVE-EEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKT 98 (133)
T ss_pred ceEEEeeEEeeec-CCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCH
Confidence 5899999987543 34688999999997655432357999999999999999999999998889999999888765 79
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCHHHHhccC
Q 009484 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (533)
Q Consensus 126 eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLE 159 (533)
+|+++||.+||.||+.|+.+|.+++|++|..||+
T Consensus 99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 9999999999999999999999999999999995
No 27
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.88 E-value=2.2e-22 Score=177.71 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=93.6
Q ss_pred cEEEEEeCCeEeccCCCCCCCeEEEEEEEeeec--CCCCCcceEEEccchhHHHHHHHHHHHCCC----CCCCCCCCCcc
Q 009484 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS--PEGITTTRGVLRRFNNFLKLFTDLKKAFPK----KNIPPAPPKGL 119 (533)
Q Consensus 46 wSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqs--Peg~~~~w~V~RRYSDF~~LhekLkk~fp~----~~LPpLPpK~l 119 (533)
|+-.++|+..... +++||+|.|.+.+.. .......|.|.||||||.+||++|++.|+. ..+|+||+|++
T Consensus 1 ~~~~~~V~d~~~~-----~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~ 75 (117)
T cd06881 1 WSRSFTVTDTRRH-----KKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKY 75 (117)
T ss_pred CcEEEEecCccee-----cCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcc
Confidence 6777888887763 357999999996421 112236999999999999999999999863 35799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccC
Q 009484 120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (533)
Q Consensus 120 fr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLE 159 (533)
+++++++||++||.+||.||+.|++||.|++|+.|++||+
T Consensus 76 ~g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 115 (117)
T cd06881 76 FGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFE 115 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhc
Confidence 9999999999999999999999999999999999999997
No 28
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.88 E-value=2.3e-22 Score=179.76 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=93.1
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------- 120 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf-------- 120 (533)
.|+|.......+ +.++|++|.|.+.+..+......|.|.||||||.+||..|++. |...+||||+|.++
T Consensus 3 ~i~V~dP~~~~~--~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd06894 3 EIDVVNPQTHGV--GKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGD 79 (123)
T ss_pred EEEEeCCcEecC--CCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccc
Confidence 344444443333 5678999999997655555557899999999999999999876 88889999999764
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcch
Q 009484 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (533)
Q Consensus 121 -r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~ 162 (533)
++++++|||+||++||.||++|++||.+++|++|+.||+.+.
T Consensus 80 ~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~~ 122 (123)
T cd06894 80 DGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEET 122 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCCC
Confidence 567899999999999999999999999999999999998764
No 29
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.88 E-value=4.1e-22 Score=178.44 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=93.7
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------- 120 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf-------- 120 (533)
.|.|.....+.+ +.++||+|.|.+.+..|......|.|.||||||.+||..|+.. +...+||+|+|.++
T Consensus 3 ~i~v~dP~~~~~--~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd07293 3 EIDVTNPQTVGV--GRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERE-SKVVVPPLPGKALFRQLPFRGD 79 (123)
T ss_pred EEEecCCeEecC--CCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhc-cCCccCCCCCCchhhhcccccc
Confidence 455555554433 5678999999998766665567999999999999999999865 67789999999865
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 121 -r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
++++++|+|+||++||+||++|++||.+++++.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 80 DGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 35789999999999999999999999999999999999876
No 30
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.88 E-value=2.5e-22 Score=175.29 Aligned_cols=101 Identities=24% Similarity=0.432 Sum_probs=87.4
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--------
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-------- 121 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr-------- 121 (533)
|.|+....+.+ ..+++||+|.|++. .|.|.||||||.+||+.|++.||...+||||+|..+.
T Consensus 2 ~~i~~~~~~~~-~~~~~y~~Y~I~~~---------~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 71 (112)
T cd06867 2 IQIVDAGKSSE-GGSGSYIVYVIRLG---------GSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSK 71 (112)
T ss_pred cEEccCccccC-CCccCEEEEEEEee---------eEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhcccccc
Confidence 45666665433 24578999999982 4999999999999999999999998999999996542
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 122 -~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
.++++|||+||.+||.||+.|+.||.+++|+.|++||+-
T Consensus 72 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06867 72 AKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDP 111 (112)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCC
Confidence 467999999999999999999999999999999999975
No 31
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.88 E-value=3.9e-22 Score=176.47 Aligned_cols=104 Identities=26% Similarity=0.368 Sum_probs=93.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eF 127 (533)
-.|.||++.. .+.||+|.|+|... ...|.|.||||||.+||..|++.++ ...|+||||+++++.+++|
T Consensus 4 ~~v~I~~~~~------~~~~~~Y~I~V~~~-----~~~w~V~RRYseF~~L~~~L~~~~~-~~~~~~P~Kk~~~~~~~~~ 71 (116)
T cd06875 4 TKIRIPSAET------VEGYTVYIIEVKVG-----SVEWTVKHRYSDFAELHDKLVAEHK-VDKDLLPPKKLIGNKSPSF 71 (116)
T ss_pred EEEEECCEEE------ECCEEEEEEEEEEC-----CeEEEEEecHHHHHHHHHHHHHHcC-cccCcCCCccccCCCCHHH
Confidence 3789999986 26799999999543 3689999999999999999999994 5678899999999889999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
|++||.+||.||+.|++++.++.|++|++||+++.+
T Consensus 72 ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~ 107 (116)
T cd06875 72 VEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKY 107 (116)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCce
Confidence 999999999999999999999999999999999865
No 32
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.88 E-value=4.7e-22 Score=176.49 Aligned_cols=98 Identities=26% Similarity=0.341 Sum_probs=89.1
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSRALLEERRCSLEEW 138 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf----r~~s~eFLEERR~~LE~Y 138 (533)
+.+.|++|.|.+....|.+....|.|.||||||.+||+.|...+|...+||||+|.++ ++++++|||+||++||.|
T Consensus 14 ~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~F 93 (116)
T cd07283 14 TMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKF 93 (116)
T ss_pred CCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 5678999999998777777778999999999999999999999999899999999644 345799999999999999
Q ss_pred HHHHhcccccCCCHHHHhccCc
Q 009484 139 MTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 139 LqkLLs~P~Ls~S~~V~eFLEL 160 (533)
|++|+.||.|++|+.|..||..
T Consensus 94 L~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 94 LKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999974
No 33
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.87 E-value=5.6e-22 Score=173.70 Aligned_cols=105 Identities=26% Similarity=0.402 Sum_probs=91.5
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eF 127 (533)
++|+||++..+.+. .+++||+|.|+|... ...|.|.||||||.+||++|++.|+ +|+||+|+++ ..+++|
T Consensus 1 ~~V~Ip~~~~~~~~-~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~~-~~~~~~ 70 (110)
T cd06880 1 IEVSIPSYRLEVDE-SEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRVR-NWNPKV 70 (110)
T ss_pred CEEEeCcEEEeeCC-CCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCcc-CCCHHH
Confidence 47999999876553 357899999999543 2599999999999999999999987 7899999874 457899
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchhh
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~aa 164 (533)
||+||.+||.||+.|+.+|. .+++|.+||+++..+
T Consensus 71 ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~ 105 (110)
T cd06880 71 LEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFP 105 (110)
T ss_pred HHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence 99999999999999999998 589999999998764
No 34
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.87 E-value=4.7e-22 Score=179.87 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=91.8
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLE 129 (533)
++|......+...|.+.||+|.|... ...|.|.||||||.+||..|...||.+.+||+|+|.++++++++||+
T Consensus 3 ~~v~dp~k~~~~~G~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FIe 75 (127)
T cd07286 3 CTIDDPTKQTKFKGMKSYISYKLVPS-------HTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFIS 75 (127)
T ss_pred EEeCCCcccCCCCCCcCEEEEEEEEe-------cCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHHH
Confidence 44444443333346779999999862 24799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 130 ERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
+||++||.||++|+.||.|++|+.|..||+.+
T Consensus 76 ~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 76 KRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 99999999999999999999999999999976
No 35
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.87 E-value=7.3e-22 Score=179.22 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=99.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL------- 120 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf------- 120 (533)
+.|.|.+...+.+ +.++|++|.|.+.+..|......+.|.||||||.+|++.|++. +...+||||+|.++
T Consensus 4 ~~i~v~dP~~~~~--g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 4 LEIDIFNPQTVGV--GRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred EEEEeeCCeEecC--CCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCCCCceeccccccc
Confidence 4566666665544 5678999999987666655567999999999999999999865 67789999999752
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchhhhhh
Q 009484 121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167 (533)
Q Consensus 121 --r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~aaRs~ 167 (533)
++++++|||+||++||+||++|++||.+++++.|+.||+.++..|.+
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~~~~ 129 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETIDRNY 129 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcCccc
Confidence 25679999999999999999999999999999999999999887664
No 36
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.87 E-value=4.7e-22 Score=180.25 Aligned_cols=111 Identities=30% Similarity=0.380 Sum_probs=90.5
Q ss_pred EEeCCeEeccCCC--CCCCeEEEEEEEeee-----------cCCCCCcceEEEccchhHHHHHHHHHHHCCC--CCCCCC
Q 009484 50 VTIPSWVVLPKSR--DSDPVVFYRVQVGLQ-----------SPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--KNIPPA 114 (533)
Q Consensus 50 VsIPSw~~v~~sk--~sk~yVvY~VqV~iq-----------sPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--~~LPpL 114 (533)
|+||+|+...+.. |..+||+|+|.+.+. .|+.....|.|.||||||++||.+|++..+- ...+++
T Consensus 2 ~~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~ 81 (132)
T cd06893 2 IRIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKG 81 (132)
T ss_pred ccccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCC
Confidence 7899999876543 457999999998532 2334467999999999999999999986331 212456
Q ss_pred CCCcc----cCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 115 PPKGL----LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 115 PpK~l----fr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
|+|++ +++++++|||+||++||.||++|+++|.+++|++|++||.+
T Consensus 82 P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 82 PPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 66654 56778999999999999999999999999999999999986
No 37
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.86 E-value=1.8e-21 Score=172.97 Aligned_cols=98 Identities=26% Similarity=0.382 Sum_probs=89.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CCCHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MKSRALLEERRCSLEEW 138 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr----~~s~eFLEERR~~LE~Y 138 (533)
+.++|+.|.|.+.+..+......|.|.||||||.+||..|.+.||...+||+|+|.+++ .++++|||+||++||.|
T Consensus 14 ~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~F 93 (116)
T cd07284 14 AIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKALHKF 93 (116)
T ss_pred CCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCHHHHHHHHHHHHHH
Confidence 46789999999987777666789999999999999999999999999999999997542 35799999999999999
Q ss_pred HHHHhcccccCCCHHHHhccCc
Q 009484 139 MTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 139 LqkLLs~P~Ls~S~~V~eFLEL 160 (533)
|++|+.||.|++|+.|+.||+-
T Consensus 94 L~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 94 LNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHcCcccccChHHHHhhcC
Confidence 9999999999999999999974
No 38
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.86 E-value=1.7e-21 Score=169.36 Aligned_cols=100 Identities=31% Similarity=0.481 Sum_probs=89.5
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLE 129 (533)
|+||++....+ .++++||+|.|.|. ..|.+.||||||.+||.+|.+.||...+|+||+|++++ ++.+|||
T Consensus 2 v~I~~~~~~~~-~~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie 71 (104)
T cd06885 2 FSIPDTQELSD-EGGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-LTPAQLE 71 (104)
T ss_pred CccCCcceecc-CCCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-CCHHHHH
Confidence 78999986544 25688999999982 36889999999999999999999988899999999885 4569999
Q ss_pred HHHHHHHHHHHHHhcccccCCCHHHHhccC
Q 009484 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (533)
Q Consensus 130 ERR~~LE~YLqkLLs~P~Ls~S~~V~eFLE 159 (533)
+||.+||.||+.|+.+|.++.|+.|++||.
T Consensus 72 ~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~ 101 (104)
T cd06885 72 ERRLQLEKYLQAVVQDPRIANSDIFNSFLL 101 (104)
T ss_pred HHHHHHHHHHHHHhcChhhccCHHHHHHHH
Confidence 999999999999999999999999999995
No 39
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.85 E-value=4.1e-21 Score=167.20 Aligned_cols=89 Identities=29% Similarity=0.403 Sum_probs=83.5
Q ss_pred CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc
Q 009484 65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS 144 (533)
Q Consensus 65 k~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkLLs 144 (533)
..|++|.|.+. . ..|.|.||||||.+||+.|++.||...+|+||+|.++++++++|+++||.+||.||+.|+.
T Consensus 16 ~~y~~Y~i~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~ 88 (105)
T cd06866 16 LKHVEYEVSSK--R-----FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVAR 88 (105)
T ss_pred cCCEEEEEEEe--c-----CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 48999999983 2 5899999999999999999999999899999999999888899999999999999999999
Q ss_pred ccccCCCHHHHhccCc
Q 009484 145 DIDLSRSVSVASFLEL 160 (533)
Q Consensus 145 ~P~Ls~S~~V~eFLEL 160 (533)
||.+++|+.|+.||..
T Consensus 89 ~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 89 HPVLSEDELVRTFLTE 104 (105)
T ss_pred ChhhccChHHHhhcCC
Confidence 9999999999999975
No 40
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.85 E-value=4.7e-21 Score=170.84 Aligned_cols=107 Identities=28% Similarity=0.406 Sum_probs=94.4
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFL 128 (533)
.|+||++...++ +++.|++|.|.|... ...|.|.||||||.+||.+|++.||....|+||+|+++++++++||
T Consensus 2 ~v~IPs~~~~g~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~i 74 (118)
T cd07277 2 NVWIPSVFLRGK--GSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFV 74 (118)
T ss_pred EEEcCcEEEecC--CCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHH
Confidence 589999997655 578999999999644 3699999999999999999999999887889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 129 EERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
|+||.+||.||+.|+.+ .+..++.|..||.-.+.
T Consensus 75 e~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~~ 108 (118)
T cd07277 75 EERRKRLQVYLRRVVNT-LIQTSPELTACPSKETL 108 (118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHHHH
Confidence 99999999999999997 66677778888876654
No 41
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.85 E-value=6.1e-21 Score=172.57 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=86.0
Q ss_pred CCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 009484 62 RDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (533)
Q Consensus 62 k~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~-~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLq 140 (533)
.+.+.||.|.|... ...+.|.||||||.+||+.|...||. ..+||+|+|.++++++++||++||++||.||+
T Consensus 15 ~g~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FIe~Rr~~Le~FL~ 87 (126)
T cd07285 15 YGLKSYIEYQLTPT-------NTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMT 87 (126)
T ss_pred CCCcCeEEEEEEec-------cCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHHHHHHHHHHHHHH
Confidence 35678999999873 24789999999999999999999974 46899999999999999999999999999999
Q ss_pred HHhcccccCCCHHHHhccCcchh
Q 009484 141 KLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 141 kLLs~P~Ls~S~~V~eFLELd~a 163 (533)
+|++||.|++++.|+.||+....
T Consensus 88 ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 88 RMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHHcCcCcCCCcHHHHHhCCCCH
Confidence 99999999999999999998654
No 42
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.85 E-value=6.4e-21 Score=169.82 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=83.7
Q ss_pred CCCeEEEEEEEeee--cCCCCCcceEEEccchhHHHHHHHHHHHCCCC-----CCCCCCCCcccCCCCHHHHHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQ--SPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-----NIPPAPPKGLLRMKSRALLEERRCSLE 136 (533)
Q Consensus 64 sk~yVvY~VqV~iq--sPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~-----~LPpLPpK~lfr~~s~eFLEERR~~LE 136 (533)
+++|++|.|.+.+- .+......|.|.||||||.+||+.|...++.. .+||+|+|.++++++++|||+||++||
T Consensus 14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~fIeeRR~~Le 93 (118)
T cd07288 14 PKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAAVIEERRNAAE 93 (118)
T ss_pred CCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHHHHHHHHHHHH
Confidence 45699999997532 22223469999999999999999999877543 489999999999999999999999999
Q ss_pred HHHHHHhcccccCCCHHHHhccCc
Q 009484 137 EWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 137 ~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
+||+.|++||.+++|++|++||+-
T Consensus 94 ~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 94 AMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHhCChhhcCChHHHHHHhc
Confidence 999999999999999999999974
No 43
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.84 E-value=1.4e-20 Score=167.90 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=82.9
Q ss_pred CCCeEEEEEEEeeecC--CCCCcceEEEccchhHHHHHHHHHHHCCC-----CCCCCCCCCcccCCCCHHHHHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQSP--EGITTTRGVLRRFNNFLKLFTDLKKAFPK-----KNIPPAPPKGLLRMKSRALLEERRCSLE 136 (533)
Q Consensus 64 sk~yVvY~VqV~iqsP--eg~~~~w~V~RRYSDF~~LhekLkk~fp~-----~~LPpLPpK~lfr~~s~eFLEERR~~LE 136 (533)
+++|++|.|.+.+... ......|.|.||||||.+||++|+..|+. ..+||+|+|+++++++++|||+||++||
T Consensus 14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~fIe~RR~~Le 93 (118)
T cd07287 14 PKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESVIEERRQCAE 93 (118)
T ss_pred CCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHHHHHHHHHHH
Confidence 4569999998854211 11125899999999999999999998873 3478999999999999999999999999
Q ss_pred HHHHHHhcccccCCCHHHHhccCc
Q 009484 137 EWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 137 ~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
+||++|++||.+++|++|++||.-
T Consensus 94 ~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 94 DLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHhcCccccCChHHHHHhcC
Confidence 999999999999999999999964
No 44
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.82 E-value=8.3e-20 Score=162.57 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=82.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkL 142 (533)
..+.|++|.|.|.. +......|.|.||||||.+||++|+... .. +|||+|+++++.+++||++||.+||.||+.|
T Consensus 17 ~~~~~t~Y~I~v~~--~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~~-~plP~K~~~g~~~~~~ie~Rr~~Le~yL~~l 91 (120)
T cd06871 17 NIQSHTEYIIRVQR--GPSPENSWQVIRRYNDFDLLNASLQISG--IS-LPLPPKKLIGNMDREFIAERQQGLQNYLNVI 91 (120)
T ss_pred CccCcEEEEEEEEE--CCcCCceeEEEeeHHHHHHHHHHHHHcC--CC-CCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 45689999999953 2222469999999999999999998642 23 4699999999889999999999999999999
Q ss_pred hcccccCCCHHHHhccCcchh
Q 009484 143 LSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 143 Ls~P~Ls~S~~V~eFLELd~a 163 (533)
+++|.+++|+.|++||+....
T Consensus 92 ~~~p~l~~s~~~~~FL~~~~~ 112 (120)
T cd06871 92 LMNPILASCLPVKKFLDPNNY 112 (120)
T ss_pred HcChhhccCHHHHHhcCcccC
Confidence 999999999999999986654
No 45
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.82 E-value=1.1e-19 Score=159.21 Aligned_cols=105 Identities=22% Similarity=0.376 Sum_probs=89.1
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALL 128 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~-~s~eFL 128 (533)
|+|.++..- .....|++|.|.|..... ...|.|.||||||.+||.+|++.||...+|+||+|+++++ ++++++
T Consensus 2 ~~i~~~~~~---~~~~~~~vY~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~ 75 (109)
T cd06883 2 VSVFGFQKR---YSPEKYYIYVVKVTRENQ---TEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVA 75 (109)
T ss_pred cEEEEEEEE---ecCCceEEEEEEEEECCC---CCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHH
Confidence 567777542 134579999999954331 3679999999999999999999999999999999988765 457999
Q ss_pred HHHHHHHHHHHHHHhcc-cccCCCHHHHhccCc
Q 009484 129 EERRCSLEEWMTKLLSD-IDLSRSVSVASFLEL 160 (533)
Q Consensus 129 EERR~~LE~YLqkLLs~-P~Ls~S~~V~eFLEL 160 (533)
++|+.+||+||+.|++. +.+++|+.|++||..
T Consensus 76 e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 76 ERRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 99999999999999987 599999999999974
No 46
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.81 E-value=2.8e-19 Score=147.66 Aligned_cols=105 Identities=35% Similarity=0.590 Sum_probs=93.6
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLE 129 (533)
|.|+.+..... +.+.+++|.|.|.... ...|.|.|||+||.+||..|++.++...+|+||+|.+++..+.++++
T Consensus 2 i~I~~~~~~~~--~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~ 75 (106)
T cd06093 2 VSIPDYEKVKD--GGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIE 75 (106)
T ss_pred EEeCCceEEcC--CCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHH
Confidence 67888876433 5678999999995433 36999999999999999999999998899999999888777899999
Q ss_pred HHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 130 ERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
+|+.+|+.||+.|+.+|.+.+++.|..||+.
T Consensus 76 ~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 76 ERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred HHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 9999999999999999999999999999974
No 47
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.81 E-value=1.6e-19 Score=151.33 Aligned_cols=93 Identities=35% Similarity=0.621 Sum_probs=81.6
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWMT 140 (533)
Q Consensus 64 sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr---~~s~eFLEERR~~LE~YLq 140 (533)
.+.+++|.|.|.+..+ ...|.|.||||||.+||.+|+..+|...+|+||+|.+++ ..+++++++|+.+||.||+
T Consensus 9 ~~~~~~~~~~v~~~~~---~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~ 85 (105)
T smart00312 9 DGKHYYYVIEIETKTG---LEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQ 85 (105)
T ss_pred CCceEEEEEEEEECCC---CceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHH
Confidence 4456677777755544 369999999999999999999999988899999998765 4679999999999999999
Q ss_pred HHhcccccCC-CHHHHhccC
Q 009484 141 KLLSDIDLSR-SVSVASFLE 159 (533)
Q Consensus 141 kLLs~P~Ls~-S~~V~eFLE 159 (533)
.|+++|.+++ |++|.+||+
T Consensus 86 ~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 86 SLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHcCHhhhccChHHHHhcC
Confidence 9999999999 999999995
No 48
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.81 E-value=1.9e-19 Score=161.12 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=90.7
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCcc
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGL 119 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--------~~LPpLPpK~l 119 (533)
..++|+..... .+.+.|++|.|.|.... ...|.|+||||||.+||.+|++.||. ..+|+||+|.+
T Consensus 4 i~~~I~~~~~~---~~~~~y~vY~I~v~~~~----~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~ 76 (123)
T cd06882 4 VSATIADIEEK---RGFTNYYVFVIEVKTKG----GSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIY 76 (123)
T ss_pred EEEEEeeeeEE---eCCCCEEEEEEEEEEcC----CCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCee
Confidence 45677775432 35688999999996433 25899999999999999999999995 36899999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccc-cCCCHHHHhccCcch
Q 009484 120 LRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA 162 (533)
Q Consensus 120 fr~~s~eFLEERR~~LE~YLqkLLs~P~-Ls~S~~V~eFLELd~ 162 (533)
+++.+ +|+|+||.+||.||+.|++.|. +++|+.|+.||....
T Consensus 77 ~~~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~ 119 (123)
T cd06882 77 VGRKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTE 119 (123)
T ss_pred cCccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCc
Confidence 87765 9999999999999999999875 999999999998653
No 49
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.80 E-value=2.4e-19 Score=160.12 Aligned_cols=91 Identities=33% Similarity=0.461 Sum_probs=81.8
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkL 142 (533)
+++.|++|.|+|.....+ ...|.|.||||||.+||.+|++.||...+|+||+|.. .++|+||.+||.||+.|
T Consensus 29 ~~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~L 100 (119)
T cd06869 29 RSKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSL 100 (119)
T ss_pred CCCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHH
Confidence 467899999999665432 4699999999999999999999999999999999975 68899999999999999
Q ss_pred hcccccCCCHHHHhccCcc
Q 009484 143 LSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 143 Ls~P~Ls~S~~V~eFLELd 161 (533)
+.+|.+++|++|.+||..+
T Consensus 101 l~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 101 LKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred hcChhhhcChHHHHhhCCC
Confidence 9999999999999999753
No 50
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.80 E-value=3.2e-19 Score=161.02 Aligned_cols=99 Identities=27% Similarity=0.440 Sum_probs=86.7
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFL 128 (533)
.|+||+|...++ +.+.|++|.|.|.. + ...|.|.||||||.+||.+|++.||....|+||+|+++++.+++|+
T Consensus 2 ~i~Ip~~~~~~~--~~~~y~vY~I~v~~--~---~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~i 74 (127)
T cd06874 2 KITIPRYVLRGQ--GKDEHFEFEVKITV--L---DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVA 74 (127)
T ss_pred EEEECCeEEecC--CCCcEEEEEEEEEE--C---CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHH
Confidence 589999986543 67789999999954 2 2589999999999999999999999877889999999998889999
Q ss_pred HHHHHHHHHHHHHHhc-ccccCCCHHH
Q 009484 129 EERRCSLEEWMTKLLS-DIDLSRSVSV 154 (533)
Q Consensus 129 EERR~~LE~YLqkLLs-~P~Ls~S~~V 154 (533)
|+||.+||.||+.|+. .+.+..++.+
T Consensus 75 e~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 75 KERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHHHHHhchhccCCccc
Confidence 9999999999999998 5788887754
No 51
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.79 E-value=7.9e-19 Score=161.45 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=101.9
Q ss_pred cccCCCCCCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcce-EEEccchhHHHHHHHHHHHCCCCCCCCC
Q 009484 36 TVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR-GVLRRFNNFLKLFTDLKKAFPKKNIPPA 114 (533)
Q Consensus 36 tvwphd~rtGwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w-~V~RRYSDF~~LhekLkk~fp~~~LPpL 114 (533)
.+-|+-......+.|.|.....+ ++.+++|.+.+.+..|.+....+ .|.||||||++||++|...++.+.+|++
T Consensus 18 ~~~~~~~~~~~~l~i~Vtd~ek~-----G~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPpl 92 (140)
T cd06891 18 ELEPERKKPKYFLRVRVTGIERN-----KSKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPAL 92 (140)
T ss_pred ccCccccCCCceEEEEEeCceec-----CCCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCC
Confidence 34455555566678888887754 33678888888777777665666 7999999999999999999999999999
Q ss_pred CCCcc-cCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 115 PPKGL-LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 115 PpK~l-fr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
|+|.+ ++.++.+|+++||++||.||++|+.||.|.+++.|+.||+.+
T Consensus 93 P~k~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 93 PLPSTSYGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 99974 477788999999999999999999999999999999999864
No 52
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.75 E-value=4.7e-18 Score=150.34 Aligned_cols=94 Identities=21% Similarity=0.453 Sum_probs=84.4
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALLEERRCSLEEWMTK 141 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~-~s~eFLEERR~~LE~YLqk 141 (533)
..++|++|.|.|...++ ...|.|+|||+||.+||.+|++.||...+|+||+|+++++ ++++++|+|+.+||.||+.
T Consensus 14 ~~~~~yvY~I~V~~~~~---~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~~~L~~Yl~~ 90 (111)
T cd06884 14 DPEKYYVYVVEVTRENQ---ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRKQDIQQFLNS 90 (111)
T ss_pred cCCCeEEEEEEEEEcCC---CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHHHHHHHHHHH
Confidence 56789999999965443 4689999999999999999999999988999999987764 4689999999999999999
Q ss_pred Hhc-ccccCCCHHHHhccC
Q 009484 142 LLS-DIDLSRSVSVASFLE 159 (533)
Q Consensus 142 LLs-~P~Ls~S~~V~eFLE 159 (533)
|++ .|.|++|+.|.+||.
T Consensus 91 Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 91 LFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred HHcCCHHHhcChHHHHhcC
Confidence 999 589999999999986
No 53
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.75 E-value=8.2e-18 Score=140.42 Aligned_cols=108 Identities=31% Similarity=0.523 Sum_probs=90.9
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC---C
Q 009484 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM---K 123 (533)
Q Consensus 47 Sy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~---~ 123 (533)
...|.|.+.... +.+..++|.+.|..... ...|.|.|||+||.+||..|+..++...+|+||+|.++.. .
T Consensus 3 ~~~v~v~~~~~~----~~~~~~~~~~~i~~~~~---~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~ 75 (113)
T PF00787_consen 3 IIQVSVVDPETS----GNKKKTYYIYQIELQDG---KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNL 75 (113)
T ss_dssp EEEEEEEEEEEE----SSSSEEEEEEEEEETTS---SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTT
T ss_pred EEEEEEcCCEEE----cCCCEEEEEEEEEECCC---CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccc
Confidence 456777766543 34456777777754443 5799999999999999999999999999999999987664 7
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 124 s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
+++++++|+..|+.||+.|+.+|.+.+++.|.+||+.+
T Consensus 76 ~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 76 DPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred cHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 89999999999999999999999999999999999853
No 54
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.2e-18 Score=154.99 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=97.8
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRA 126 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~-~s~e 126 (533)
..|.|+...... .+...|+-|.|.+.+.+|.+....-+|.||||||.||+..|+..-+...+|+||.|.++++ ...+
T Consensus 18 LeI~V~nPrt~~--~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre 95 (144)
T KOG2527|consen 18 LEIDVINPRTHG--DGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFRE 95 (144)
T ss_pred EEEEeeCCcccc--cccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHH
Confidence 455555555422 2456799999999988888777889999999999999999999988889999999977665 3469
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchhh
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~aa 164 (533)
|||+||++||.||++++.||.+.++..|..||..+...
T Consensus 96 ~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~~ 133 (144)
T KOG2527|consen 96 FIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELID 133 (144)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999877653
No 55
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.71 E-value=5.2e-17 Score=149.07 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=87.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--------------------
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP-------------------- 107 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp-------------------- 107 (533)
..|.|+++...........+++|.|+|. .+ ...|.|.|||+||.+||.+|+..++
T Consensus 4 i~a~I~~~er~~~~~~~~~~~~Y~Iev~--~g---~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~ 78 (140)
T cd06895 4 IKARITDVERSGTTRHLLNPNLYTIELQ--HG---QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKR 78 (140)
T ss_pred cEEEEeEEeccCCCCCCCceEEEEEEEE--EC---CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhcccc
Confidence 4688888864322112467899999994 33 3699999999999999999998632
Q ss_pred ---------CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 108 ---------KKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 108 ---------~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
...+|+||.|...+. .++++++||.+||.||+.|+.+|.+.+++++.+||++.
T Consensus 79 ~~~~~~~~~~~~lP~lP~~~~~~~-~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 79 SRKPEREKKNRRLPSLPALPDILV-SEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred ccccccccccccCCCCCCcccccc-CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 235788887775543 78999999999999999999999999999999999863
No 56
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.70 E-value=5.1e-17 Score=149.79 Aligned_cols=108 Identities=25% Similarity=0.315 Sum_probs=92.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCccc-----
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLL----- 120 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~--fp~~~LPpLPpK~lf----- 120 (533)
..|.|+.... ...+|.|+|...+..|......+.|.|||+||.|||.+|... |+++.+||+|+|..+
T Consensus 3 ~~~~i~da~~------~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~ 76 (141)
T cd06892 3 LQVDISDALS------ERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASRE 76 (141)
T ss_pred eeeecccccc------cCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccc
Confidence 4566665442 235899999998888887788999999999999999999976 799999999999644
Q ss_pred ---------CCCCHHHHHHHHHHH---------------HHHHHHHhcccccCCCHHHHhccCcc
Q 009484 121 ---------RMKSRALLEERRCSL---------------EEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 121 ---------r~~s~eFLEERR~~L---------------E~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
+....+|+++|++.| |.||++|+.||.|.++..|+.||+.+
T Consensus 77 k~~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~ 141 (141)
T cd06892 77 KLQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE 141 (141)
T ss_pred eeeecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence 124589999999999 58999999999999999999999864
No 57
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.69 E-value=1.6e-16 Score=140.90 Aligned_cols=104 Identities=21% Similarity=0.383 Sum_probs=86.7
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHH
Q 009484 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALL 128 (533)
Q Consensus 50 VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s-~eFL 128 (533)
|+|+++.-.. ..+.|.+|.|+|..... ....| |+|||+||.+||.+|++.||...+|.||+|.++++.. ++.+
T Consensus 2 ~~V~~f~Kr~---~p~k~yvY~i~V~~~~~--~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~va 75 (109)
T cd07289 2 VSVFTYHKRY---NPDKHYIYVVRILREGQ--IEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVA 75 (109)
T ss_pred cEEeeEEEEE---cCCCeEEEEEEEEECCC--ceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHH
Confidence 6788886432 23456799999965432 11245 9999999999999999999988899999998887653 7999
Q ss_pred HHHHHHHHHHHHHHhc-ccccCCCHHHHhccC
Q 009484 129 EERRCSLEEWMTKLLS-DIDLSRSVSVASFLE 159 (533)
Q Consensus 129 EERR~~LE~YLqkLLs-~P~Ls~S~~V~eFLE 159 (533)
|+|+.+|+.||+.|++ .+.+++|+.|..|+.
T Consensus 76 e~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 76 AKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 9999999999999998 779999999999986
No 58
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.68 E-value=2.4e-16 Score=138.70 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=86.6
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCccc
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGLL 120 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--------~~LPpLPpK~lf 120 (533)
.++|+++... +.+++|.|.|...+ ...|.|.|||+||.+||.+|.+.||. ..+|+||++...
T Consensus 2 ~~~V~~~~~~------~~~y~Y~i~v~~s~----~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~ 71 (112)
T cd06890 2 SASVESVLLE------DNRYWYRVRATLSD----GKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD 71 (112)
T ss_pred eEEEEEEEEE------CCEEEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC
Confidence 4788888753 45789999997654 37999999999999999999999993 358889877644
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccc-ccCCCHHHHhccCc
Q 009484 121 RMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLEL 160 (533)
Q Consensus 121 r~~s~eFLEERR~~LE~YLqkLLs~P-~Ls~S~~V~eFLEL 160 (533)
. .+.+++++||.+|+.||+.|+.+| .+.+|+.|++||..
T Consensus 72 ~-~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 72 V-VNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred c-chhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 3 567999999999999999999999 99999999999974
No 59
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.68 E-value=2.3e-16 Score=139.86 Aligned_cols=93 Identities=22% Similarity=0.354 Sum_probs=81.5
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHHHHHHHHHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALLEERRCSLEEWMTKL 142 (533)
Q Consensus 64 sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s-~eFLEERR~~LE~YLqkL 142 (533)
.+.|.+|.|+|..... ...|.|+|||+||.+||.+|++.||...+|.||+|.++++.+ ++.+|+|+.+|+.||+.|
T Consensus 13 p~k~y~Y~I~V~~~~~---~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~L 89 (109)
T cd07290 13 PSKGYAYVVKVQREGH---KEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHL 89 (109)
T ss_pred CCCcEEEEEEEEECCC---ceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHH
Confidence 3456779999965432 356999999999999999999999988899999998887765 799999999999999887
Q ss_pred hc-ccccCCCHHHHhccC
Q 009484 143 LS-DIDLSRSVSVASFLE 159 (533)
Q Consensus 143 Ls-~P~Ls~S~~V~eFLE 159 (533)
+. .|.|++|+.|.+||.
T Consensus 90 l~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 90 IHAPPEVAECDLVYTFFH 107 (109)
T ss_pred HcCChheecCHHHHHhcc
Confidence 75 889999999999986
No 60
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.68 E-value=1.2e-16 Score=146.97 Aligned_cols=108 Identities=24% Similarity=0.335 Sum_probs=87.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC----
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---- 121 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk--~fp~~~LPpLPpK~lfr---- 121 (533)
+.|.|..... ...+|.|+|...+..+.+....+.|.||||||.|||++|.. .|+++.+||+|+|..+.
T Consensus 3 l~i~vsD~~~------~~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~ 76 (141)
T cd07291 3 LQIDIPDALS------ERDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPRE 76 (141)
T ss_pred cEEEeccccc------cCCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHH
Confidence 4555555442 22469999999877787777899999999999999999996 67999999999997652
Q ss_pred -----------CCCHHHHHHH--------------HHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 122 -----------MKSRALLEER--------------RCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 122 -----------~~s~eFLEER--------------R~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
+...+|++.| +++||.||++|++||.+++++.|+.||+.+
T Consensus 77 k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 77 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 1235777755 467999999999999999999999999864
No 61
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.68 E-value=2.4e-16 Score=141.20 Aligned_cols=93 Identities=27% Similarity=0.404 Sum_probs=81.7
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCCCHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMKSRALLEERRC 133 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~---------~~LPpLPpK~lfr~~s~eFLEERR~ 133 (533)
..++|++|.|.|...+ ...|.|+|||+||.+||.+|++.||. ..+|+||+|.++++. +++|+||.
T Consensus 14 ~~~~~y~Y~i~v~~s~----~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~~~--~v~e~Rr~ 87 (118)
T cd06887 14 VPSQHYVYMFLVKWQD----LSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFDGQ--RAAENRQG 87 (118)
T ss_pred cCCCcEEEEEEEEEcC----CcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccCcc--hHHHHHHH
Confidence 3567999999996543 36899999999999999999999995 579999999887764 99999999
Q ss_pred HHHHHHHHHhc-ccccCCCHHHHhccCcc
Q 009484 134 SLEEWMTKLLS-DIDLSRSVSVASFLELE 161 (533)
Q Consensus 134 ~LE~YLqkLLs-~P~Ls~S~~V~eFLELd 161 (533)
+|+.||+.|+. .+.+++|+.|+.||...
T Consensus 88 ~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 88 TLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred HHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 99999999976 67999999999999864
No 62
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.65 E-value=3.7e-16 Score=143.81 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=87.7
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCcccCC--
Q 009484 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLLRM-- 122 (533)
Q Consensus 47 Sy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~--fp~~~LPpLPpK~lfr~-- 122 (533)
++.|.|+.... .++ .|.|.|...+..|......+.|.||||||.|||++|..+ |+++.+||+|+|..++.
T Consensus 2 ~l~v~isD~~~-----~~d-~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~ 75 (141)
T cd07292 2 ALQVDISDALS-----ERD-KVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASR 75 (141)
T ss_pred ceEEEcccccc-----cCC-ceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchH
Confidence 35667666543 222 499999998888877778999999999999999999865 78999999999976531
Q ss_pred -------------CCHHHHH--------------HHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 123 -------------KSRALLE--------------ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 123 -------------~s~eFLE--------------ERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
...+|.+ +|+++||.||++|++||.++++..|+.||+-
T Consensus 76 ~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 76 EKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 1134442 7789999999999999999999999999985
No 63
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.65 E-value=8.6e-16 Score=137.68 Aligned_cols=94 Identities=24% Similarity=0.369 Sum_probs=81.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---------CCCCCCCCcccCCCC-HHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---------NIPPAPPKGLLRMKS-RALLEERR 132 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~---------~LPpLPpK~lfr~~s-~eFLEERR 132 (533)
+.+.|.+|.|.|...++ ..|.|+|||+||.+||.+|++.||.. .+|.||+|.++++.. .+++++|+
T Consensus 14 ~~~k~y~Y~i~V~~~dg----~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~~~~~e~R~ 89 (119)
T cd06888 14 APSKHYVYIINVTWSDG----SSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHIRDVAVKRL 89 (119)
T ss_pred cCCCcEEEEEEEEEcCC----CEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchhHHHHHHHH
Confidence 45567799999976543 58999999999999999999999952 599999999887654 68999999
Q ss_pred HHHHHHHHHHhcc-cccCCCHHHHhccCc
Q 009484 133 CSLEEWMTKLLSD-IDLSRSVSVASFLEL 160 (533)
Q Consensus 133 ~~LE~YLqkLLs~-P~Ls~S~~V~eFLEL 160 (533)
..|+.||+.|+.. +.|++|+.|..|++.
T Consensus 90 ~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 90 KPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 9999999999985 678899999999874
No 64
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.7e-15 Score=156.28 Aligned_cols=115 Identities=25% Similarity=0.344 Sum_probs=97.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-----C
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-----M 122 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr-----~ 122 (533)
.+|.++.-. ..-..+.+.|+.|.|......|......+.|.||||||++||..|...||.+.+||+|+|.... .
T Consensus 110 ~~i~~~~~~-~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 110 LSITVSDPE-PEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred eeeecCCCc-cccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 355555544 1122366789999999988877776788999999999999999999999999999999996433 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 123 ~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
++++|+++||.+|++||++++.||.|.++++|+.||+.+..
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~ 229 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSK 229 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhccccc
Confidence 67899999999999999999999999999999999999954
No 65
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.54 E-value=4.1e-14 Score=129.89 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=78.7
Q ss_pred EEEEeCCeEeccCCC--CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcc------
Q 009484 48 YCVTIPSWVVLPKSR--DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL------ 119 (533)
Q Consensus 48 y~VsIPSw~~v~~sk--~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~l------ 119 (533)
..|.|-...-....+ ..-.|++|+|.|. -+ ...|.|.|||+||.+||.+|.. |....-.|||+|.+
T Consensus 4 i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~--~g---~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~ 77 (135)
T cd07296 4 IKARVLEVERFTSTSDVKKPSLNVYTIELT--HG---EFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQT 77 (135)
T ss_pred eEEEEEEEEEeeccccccccceEEEEEEEE--eC---CEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhccc
Confidence 455666655433222 3446899999994 33 4699999999999999999997 55432224788754
Q ss_pred -----------cCCC-CHHHHH----HHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 120 -----------LRMK-SRALLE----ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 120 -----------fr~~-s~eFLE----ERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
+... +....| +||.+||+||++|+..|..+++.++.+||++
T Consensus 78 ~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 78 IKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred cccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 2211 222444 8999999999999999999999999999986
No 66
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.2e-13 Score=145.56 Aligned_cols=92 Identities=26% Similarity=0.396 Sum_probs=82.8
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkL 142 (533)
|-+.|+.|.+.-+. ....|.|||..|.|||++|..+|+...+|+||.|..-+++..+||++||.+|+.||+.+
T Consensus 201 g~ks~i~y~ltpt~-------t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~~wm~~~ 273 (490)
T KOG2528|consen 201 GLKSYIAYQLTPTH-------TNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVTGRFEEDFIEKRRKGLQWWMNHM 273 (490)
T ss_pred cchheeEeeecccc-------cCcchhhcccccHHHHHHHHhhcccccCCCCCccccccchhHHHHHHHHHHHHHHHHHh
Confidence 45678888776532 23349999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCHHHHhccCcc
Q 009484 143 LSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 143 Ls~P~Ls~S~~V~eFLELd 161 (533)
+.||+|++|+.+..||.-.
T Consensus 274 ~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 274 CRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred hcchHhhhhHHHHHHHcCC
Confidence 9999999999999999876
No 67
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.35 E-value=5.1e-12 Score=114.28 Aligned_cols=93 Identities=27% Similarity=0.265 Sum_probs=80.1
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCC--CHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMK--SRALLEERR 132 (533)
Q Consensus 64 sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~---------~~LPpLPpK~lfr~~--s~eFLEERR 132 (533)
.+.+.+|.|.|...+ +..|.|+|||.||..||.+|++.||. +.+|.||.|.++++. ..+.-++|+
T Consensus 16 ~~~h~~Y~i~V~wsd----gs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~~~~~~~~a~~R~ 91 (121)
T cd06889 16 KRRHKTYMFSVLWSD----GSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGSLKGSTSRSLARL 91 (121)
T ss_pred ccceeEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCCcccccchHHHHH
Confidence 456789999997654 37899999999999999999999993 459999999888764 344678999
Q ss_pred HHHHHHHHHHhc-ccccCCCHHHHhccCc
Q 009484 133 CSLEEWMTKLLS-DIDLSRSVSVASFLEL 160 (533)
Q Consensus 133 ~~LE~YLqkLLs-~P~Ls~S~~V~eFLEL 160 (533)
..|+.|++.|++ .|.|++|+.|..|+..
T Consensus 92 ~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 92 KLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred HHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 999999999998 7799999999999974
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=7.1e-12 Score=129.22 Aligned_cols=94 Identities=29% Similarity=0.440 Sum_probs=76.9
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC-CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP-KKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTK 141 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp-~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqk 141 (533)
..+.|++|.|+|+.. ...|.|.|||+||..||++|-.+.. ... -||||++.+++++.|+|+|+..||-|||.
T Consensus 23 ~~~~~t~y~i~v~~g-----~~ew~v~~ry~df~~lheklv~e~~i~k~--llppkk~ig~~~~s~~e~r~~~leiylq~ 95 (490)
T KOG1259|consen 23 SSGGVTYYDIKVRVG-----KVEWLVERRYRDFANLHEKLVGEISISKK--LLPPKKLVGNKQPSFLEQRREQLEIYLQE 95 (490)
T ss_pred ccCceEEEEEEEEec-----ceeeeehhhhhHHHHHHHHhhhhheeccc--cCCchhhcCCCChhHHHHHHHHHHHHHHH
Confidence 456899999999654 3699999999999999999987654 222 37999999999999999999999999999
Q ss_pred HhcccccCCCHHHHhccCcchh
Q 009484 142 LLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 142 LLs~P~Ls~S~~V~eFLELd~a 163 (533)
|+.--.---..++.+||....+
T Consensus 96 ll~~f~~~~pr~la~fl~f~~y 117 (490)
T KOG1259|consen 96 LLIYFRTELPRALAEFLDFNKY 117 (490)
T ss_pred HHHHccccCHHHHHHHhccchH
Confidence 9974333335688999987744
No 69
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.22 E-value=4e-11 Score=105.41 Aligned_cols=87 Identities=26% Similarity=0.351 Sum_probs=75.5
Q ss_pred EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc-cc
Q 009484 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DI 146 (533)
Q Consensus 68 VvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkLLs-~P 146 (533)
.+|.|+|...++ ..-.|+|+|.||.+||.+|++.||...+|.||.++-++.++. -++|.+.|+.||+.|++ .+
T Consensus 13 ~lY~i~V~~sd~----~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~--~~~R~~~L~~Yl~~Ll~~~~ 86 (101)
T cd06896 13 NLYLVQVTQSCN----LVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDS--DHKRVRDLNHYLEQLLSGSR 86 (101)
T ss_pred eEEEEEEEEeCC----CcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccH--HHHHHHHHHHHHHHHHccCH
Confidence 369999965443 677899999999999999999999999999999976665543 47799999999999997 78
Q ss_pred ccCCCHHHHhccCc
Q 009484 147 DLSRSVSVASFLEL 160 (533)
Q Consensus 147 ~Ls~S~~V~eFLEL 160 (533)
++++|+.|..|+..
T Consensus 87 eVa~sd~v~sFF~~ 100 (101)
T cd06896 87 EVANSDCVLSFFLS 100 (101)
T ss_pred HHhcchHHHHHhhc
Confidence 99999999999853
No 70
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.19 E-value=3.9e-11 Score=130.21 Aligned_cols=103 Identities=27% Similarity=0.306 Sum_probs=85.6
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcce---EEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----
Q 009484 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR---GVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---- 121 (533)
Q Consensus 49 ~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w---~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr---- 121 (533)
.|++|...... -...+.|+.|.|.-....|.+..... +|.||||||.+||..|...||.+.+||+|+|.+.+
T Consensus 134 ~~~~p~s~~~~-~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~ 212 (524)
T COG5391 134 TVSNPQSLTLL-VDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYG 212 (524)
T ss_pred ccccchhcccc-cccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccc
Confidence 45555554432 11346799999988777776665555 99999999999999999999999999999998764
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccccCCCH
Q 009484 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSV 152 (533)
Q Consensus 122 -~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~ 152 (533)
+++++|+++|+++|+.||+.+..||.+.++.
T Consensus 213 ~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 213 DRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 6789999999999999999999999999866
No 71
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.9e-09 Score=113.17 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=80.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkL 142 (533)
+...|++|+|++ .....+.+|||.|..||..|+++|.+..+|.+|+|++|... +.-+++||.+||+||+.+
T Consensus 13 ~~~~ytaynih~--------nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L~-~~~~~~rr~~leqylqa~ 83 (407)
T KOG3784|consen 13 SLERYTAYNIHI--------NGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKLT-PQQLDSRRRGLEQYLQAV 83 (407)
T ss_pred Ccccccceeeee--------cceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCCC-hhhhHHHHHHHHHHHHHH
Confidence 456799999999 24667889999999999999999999899999999988664 699999999999999999
Q ss_pred hcccccCCCHHHHhccCc
Q 009484 143 LSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 143 Ls~P~Ls~S~~V~eFLEL 160 (533)
+++|.++++..+..||.-
T Consensus 84 ~q~~~l~~s~~~~~fL~~ 101 (407)
T KOG3784|consen 84 CQDPVLARSELVQKFLMR 101 (407)
T ss_pred hcCccccchhhhhHHHHh
Confidence 999999999999999853
No 72
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=98.84 E-value=1.5e-08 Score=92.92 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=72.7
Q ss_pred EEEEeCCeEeccCCCCCCCe--EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC---------------
Q 009484 48 YCVTIPSWVVLPKSRDSDPV--VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN--------------- 110 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~y--VvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~--------------- 110 (533)
..+.|-....... +.+.+ .+|+|+++ -+ ...|.|.|||.+|..||..|...--...
T Consensus 4 i~~~V~~~er~~s--~s~~~~~~lYtIelt--HG---~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~ 76 (130)
T cd07297 4 VTAKVENTERYTT--GSKVHVCTLYTVRLT--HG---EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQL 76 (130)
T ss_pred eEEEEEEEEEeec--ccccccceeEEEEEe--cC---ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhcccc
Confidence 4455555554322 23333 69999993 22 2699999999999999999986322222
Q ss_pred ------CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCc
Q 009484 111 ------IPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (533)
Q Consensus 111 ------LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLEL 160 (533)
+|.||.+.-. - .+-+..|+++||.||++||..|..++.++..+||++
T Consensus 77 ~~~~~~mP~LP~~~~~--~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 77 EGLTEEMPSLPGTDRE--A-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred ccccCcCCCCCCCCch--h-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 3344433211 0 245778999999999999999999999999999986
No 73
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.1e-06 Score=90.57 Aligned_cols=93 Identities=28% Similarity=0.324 Sum_probs=73.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-CCCC--CCCCC----CCcccCCCCHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-PKKN--IPPAP----PKGLLRMKSRALLEERRCSL 135 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~f-p~~~--LPpLP----pK~lfr~~s~eFLEERR~~L 135 (533)
..+.|++|.|.|.+....-....|.|+|||+||..||.+|++.| |... .|..+ .+.++.+++..++.+|+.++
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 210 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEAL 210 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhH
Confidence 56789999999976654322357999999999999999999999 6543 34444 23466778899999999999
Q ss_pred HHHH--HHHhcccccCCCHHHH
Q 009484 136 EEWM--TKLLSDIDLSRSVSVA 155 (533)
Q Consensus 136 E~YL--qkLLs~P~Ls~S~~V~ 155 (533)
++|| +.....+.+.++..+.
T Consensus 211 ~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 211 EEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred HHHHHhhhhhccccccchHHhh
Confidence 9999 8887788777776554
No 74
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.18 E-value=4e-06 Score=97.41 Aligned_cols=114 Identities=20% Similarity=0.328 Sum_probs=92.8
Q ss_pred CCCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 009484 42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121 (533)
Q Consensus 42 ~rtGwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr 121 (533)
.++|.+-.|+|=.+.-.- ..+++..|.|+|.... ....-.++|-|-||.+||.+|+..||...+|.||..+..+
T Consensus 1370 ~sdgRi~~v~v~~f~K~~---~pnK~YmYvveV~r~n---~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~g 1443 (1639)
T KOG0905|consen 1370 NSDGRISEVTVLKFEKHY---SPNKIYMYVVEVTREN---QAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLG 1443 (1639)
T ss_pred ccCCceEEEEEEEeeeec---cCCceEEEEEEEEecC---CCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeec
Confidence 556787778877765321 3456789999995432 2356678999999999999999999999999999887555
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhc-ccccCCCHHHHhccCcc
Q 009484 122 MKS-RALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELE 161 (533)
Q Consensus 122 ~~s-~eFLEERR~~LE~YLqkLLs-~P~Ls~S~~V~eFLELd 161 (533)
+.+ .+..++|+..|+.||+.|+. .++++.|..|.+|+..-
T Consensus 1444 rsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1444 RSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 544 89999999999999999997 77999999999999654
No 75
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.43 E-value=0.00059 Score=61.90 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=62.8
Q ss_pred CeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH-----CCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 009484 66 PVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA-----FPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (533)
Q Consensus 66 ~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~-----fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLq 140 (533)
+-++|.|+|..+ .+.|.|.|+|-||..|.+.|... |. .+++||++...... ++++ ...|.+||.
T Consensus 26 ~e~~~~v~v~Cq-----grsw~VkRSyEdfr~LD~~LHrCvyDRrfS--~L~eLp~~~~l~~~-~~~v---~~~l~~YL~ 94 (115)
T cd07298 26 KELVYLVQIACQ-----GRSWIVKRSYEDFRVLDKHLHLCIYDRRFS--QLPELPRSDSLKDS-PESV---TQMLMAYLS 94 (115)
T ss_pred CCeEEEEEEEeC-----CCceEEEeeHHHHHHHHHHHHHHHHhhhhh--ccccCCCccccccc-HHHH---HHHHHHHHH
Confidence 457999999664 46999999999999999999877 43 37889987654433 5666 458999999
Q ss_pred HHhccc-ccCCCHHHHhccCc
Q 009484 141 KLLSDI-DLSRSVSVASFLEL 160 (533)
Q Consensus 141 kLLs~P-~Ls~S~~V~eFLEL 160 (533)
++-..- ..-++-.|.+||++
T Consensus 95 RlS~Ia~~~~nCGPvLtWlei 115 (115)
T cd07298 95 RLSAIAGNKINCGPALTWMEI 115 (115)
T ss_pred HHHHHhhCCccchhcceeeeC
Confidence 887632 33456677777764
No 76
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.17 E-value=0.00041 Score=72.95 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=75.3
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC---------CCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Q 009484 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP---------KKNIPPAPPKGLLRMKSRALLEERRCSLEE 137 (533)
Q Consensus 67 yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp---------~~~LPpLPpK~lfr~~s~eFLEERR~~LE~ 137 (533)
+-||.|.|.... .....|+|||-||..++.+|++.|+ .+.+|+||.+.++... ++--|+|...|..
T Consensus 38 hFvyVievkw~~----~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfk-qe~Ae~r~~~ln~ 112 (386)
T KOG4773|consen 38 HFVYVIEVKWYG----GSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFK-QEIAEERIPALNA 112 (386)
T ss_pred heEEEEEehhhc----cccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechh-hhhhhhhhHHHHH
Confidence 779999886543 2588999999999999999999998 3678999999887655 5899999999999
Q ss_pred HHHHHhccccc-CCCHHHHhccCcc
Q 009484 138 WMTKLLSDIDL-SRSVSVASFLELE 161 (533)
Q Consensus 138 YLqkLLs~P~L-s~S~~V~eFLELd 161 (533)
|+.-|++-|.- ..++.|.-|+-..
T Consensus 113 y~e~LlslPi~~l~~p~l~~fffvs 137 (386)
T KOG4773|consen 113 YCEWLLSLPIGRLGGPGLRPFFFVS 137 (386)
T ss_pred HHHHHHhcchhhcCCCCceeeeeec
Confidence 99999998843 5678888887543
No 77
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=95.96 E-value=0.064 Score=48.90 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=60.9
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (533)
Q Consensus 64 sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~---~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLq 140 (533)
+..-++|.|+|..+ .+.|.|.|.|-+|.-|.+.|....-+ -.+++||+--.... .++-+ ...|.+||.
T Consensus 23 ~~k~~~~~v~V~cq-----g~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~~~-~~~~~---~~~l~~YL~ 93 (114)
T cd07278 23 SGKELVYLVQVQCQ-----GKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIEKR-EQQNL---HQVLSDYLK 93 (114)
T ss_pred CCCceEEEEEEEeC-----CcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccccc-hHHHH---HHHHHHHHH
Confidence 34568999999655 37999999999999999999765332 24667776432211 23333 458999999
Q ss_pred HHhcc-cccCCCHHHHhccCc
Q 009484 141 KLLSD-IDLSRSVSVASFLEL 160 (533)
Q Consensus 141 kLLs~-P~Ls~S~~V~eFLEL 160 (533)
++-.. -..-++-.|..||++
T Consensus 94 RlS~Ia~~~inCGPvLtWlei 114 (114)
T cd07278 94 RLSSIAGNLLNCGPVLNWLEL 114 (114)
T ss_pred HHHHHhcCcccchhcceeeeC
Confidence 88763 234567778788764
No 78
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=95.90 E-value=0.031 Score=50.74 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=59.4
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 009484 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (533)
Q Consensus 64 sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~---~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLq 140 (533)
.+..++|.|+|..+ .+.|.|.|.|-||..|.+.|....-+ -.+++||+-- -..+ --+.=...|..||.
T Consensus 22 ~~k~~~flv~V~cq-----grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~--~l~~--~~~~~~~~l~~YL~ 92 (113)
T cd07299 22 SEKDLVFLVQVTCQ-----GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLC--EIGD--RLQILTPLLSEYLN 92 (113)
T ss_pred CCCceEEEEEEEec-----CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccc--cccc--hHHHHHHHHHHHHH
Confidence 34568999999654 46999999999999999999765332 2456666542 1111 11333458999999
Q ss_pred HHhcc-cccCCCHHHHhccCc
Q 009484 141 KLLSD-IDLSRSVSVASFLEL 160 (533)
Q Consensus 141 kLLs~-P~Ls~S~~V~eFLEL 160 (533)
++-.. -..-++-.|..||++
T Consensus 93 RlS~Ia~~~inCGPVLtWmeI 113 (113)
T cd07299 93 RLTGIVDSNLNCGPVLTWMEI 113 (113)
T ss_pred HHHHHhcCCccccccceeeeC
Confidence 88763 234456677777764
No 79
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=94.71 E-value=0.042 Score=58.35 Aligned_cols=94 Identities=22% Similarity=0.367 Sum_probs=71.5
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC---------------CCCHHHHH
Q 009484 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---------------MKSRALLE 129 (533)
Q Consensus 67 yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk--~fp~~~LPpLPpK~lfr---------------~~s~eFLE 129 (533)
-|-|+|++....|.+. ..+.|.|---+|+|||..+.. .|.+..+||.||+.-|- +.-.+|+.
T Consensus 39 kvK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~K 117 (399)
T KOG1660|consen 39 KVKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLK 117 (399)
T ss_pred cceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHH
Confidence 4789999988888876 788899999999999988764 45577888888885331 11134433
Q ss_pred HH-----------HH---HHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 130 ER-----------RC---SLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 130 ER-----------R~---~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
-. +. .=|-||++|..||+++.+.-+.-||+.+
T Consensus 118 mK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~ 163 (399)
T KOG1660|consen 118 MKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYD 163 (399)
T ss_pred HHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhc
Confidence 22 11 2356899999999999999999999988
No 80
>PLN02866 phospholipase D
Probab=87.35 E-value=1.4 Score=52.74 Aligned_cols=92 Identities=21% Similarity=0.452 Sum_probs=65.6
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC---------------------------------C-CCCCC
Q 009484 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF---------------------------------P-KKNIP 112 (533)
Q Consensus 67 yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~f---------------------------------p-~~~LP 112 (533)
...|+|++ +.. .-.|.+++.=|+-.-||-.|++.- + ...+|
T Consensus 32 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (1068)
T PLN02866 32 LLSYTIEL--QYK---QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVP 106 (1068)
T ss_pred EEEEEEEE--EEe---eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccccccccccccc
Confidence 35788888 444 358999999999998988887651 0 01111
Q ss_pred C----------CCCCc---ccC---CCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 113 P----------APPKG---LLR---MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 113 p----------LPpK~---lfr---~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
. .|... +++ -..+.+...++.+||.||+.+|.+..+.++..+.+||++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~l 173 (1068)
T PLN02866 107 LHHDESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSKL 173 (1068)
T ss_pred ccchhhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeecee
Confidence 1 11110 222 123577788888899999999999999999999999999865
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.29 E-value=3.8 Score=38.73 Aligned_cols=96 Identities=16% Similarity=0.296 Sum_probs=69.0
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHH
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEE 475 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmee 475 (533)
..+.+=+..+++++.+...+.+++..=+-+.--.++=...+++.++.+.+.+.+..++-. +++..+++++..+.|.+++
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-~~~~~~~~~~~~~~~~~~~ 169 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-KELQDSREEVQELRSQLER 169 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777766554444444444455677788888887777777654 8999999999999999999
Q ss_pred HHHHHHHHHHhhhhccc
Q 009484 476 LRQKSLEMEWKLKSKQC 492 (533)
Q Consensus 476 lr~~~~e~e~~lks~~~ 492 (533)
++..+...+.++++.+.
T Consensus 170 ~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 170 LQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98887777777766543
No 82
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=86.17 E-value=1.1 Score=37.84 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=74.5
Q ss_pred eEEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhh
Q 009484 387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466 (533)
Q Consensus 387 ~~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~ 466 (533)
.+=|+.+|+.++..++............+|.++-..|+..++-..|=.-||+.+=.|+...+...+....+.++.-++=+
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 118 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVL 118 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35688999999999999999999999999999999999999998888899999999999999999999999999888888
Q ss_pred hhhhc
Q 009484 467 TQMQW 471 (533)
Q Consensus 467 tq~qw 471 (533)
|.=|+
T Consensus 119 tpeQR 123 (125)
T PF13801_consen 119 TPEQR 123 (125)
T ss_dssp -GGGH
T ss_pred CHHHh
Confidence 76554
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.62 E-value=4.4 Score=39.91 Aligned_cols=87 Identities=34% Similarity=0.439 Sum_probs=61.7
Q ss_pred hHhHHHHHHHHHHHhhc-------ccHHHHHHHhhhhHHHHH-----------HhhhhcccchhhhHHhhhhhHHHHHHH
Q 009484 397 KLSRVLLTMERRLVTAK-------TDMEDLITRLNQEMTVKD-----------YLMTKVKDLEVELETTKQKSKETLQQA 458 (533)
Q Consensus 397 kl~rvl~t~~~rl~tak-------tdmedliarlnqe~avk~-----------~l~tkvkdlevelett~~~~ke~lqqa 458 (533)
+=|++|-.+|.|..-|- +||-.||++-|.||-|=. =+..|+||.+.||..++..++- |+|.
T Consensus 33 ~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~-L~~L 111 (194)
T PF15619_consen 33 KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH-LKKL 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34789999999976654 899999999999997622 2456889999999998888875 7776
Q ss_pred H----HHHhhhhhhhhcchHHHHHHHHHHHHhh
Q 009484 459 I----LSERERLTQMQWDMEELRQKSLEMEWKL 487 (533)
Q Consensus 459 v----l~erer~tq~qwdmeelr~~~~e~e~~l 487 (533)
+ |.||+.+++ .++.+..+..+-|.++
T Consensus 112 ~~dknL~eReeL~~---kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 112 SEDKNLAEREELQR---KLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHcCCchhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 6 478876532 3444444444433333
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.32 E-value=11 Score=39.19 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=82.2
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHH--HH-HHHHHHHhhhhhhhhcchH
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE--TL-QQAILSERERLTQMQWDME 474 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke--~l-qqavl~erer~tq~qwdme 474 (533)
++-+...|++++..-+.|.+.|.+.+++--.+..=|..+-..|+.|+...|+...| .. +.-+-.=|+++.+.+=+++
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 35577888899999999999999999999899999999999999999888876553 11 2223333677777777777
Q ss_pred HHHHHHHHHHHhhhhccccchhh-----hhhhhhcCchhhhHhhhhhhh
Q 009484 475 ELRQKSLEMEWKLKSKQCCRMET-----HMQSQWKNPLSRIKMCCRSWM 518 (533)
Q Consensus 475 elr~~~~e~e~~lks~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 518 (533)
+.|+++.+++.+|+..+..--+. .++.+-. -+.++..=||.|-
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~-e~~~~~~~~r~~t 274 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIA-EAEKIREECRGWT 274 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCC
Confidence 77777777777666654433221 1222221 2445556677773
No 85
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=68.10 E-value=41 Score=29.59 Aligned_cols=89 Identities=31% Similarity=0.358 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhhcccHHHHHHHhhhhHHHH-HHhhhhcccchhhhHHhhhhhHH---HHHHHHHHHhhhhhhhhcchH
Q 009484 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVK-DYLMTKVKDLEVELETTKQKSKE---TLQQAILSERERLTQMQWDME 474 (533)
Q Consensus 399 ~rvl~t~~~rl~taktdmedliarlnqe~avk-~~l~tkvkdlevelett~~~~ke---~lqqavl~erer~tq~qwdme 474 (533)
+.+-.-++-=|..+..|+. |+.++|..++.| .=|..++.+|++.++..+++..+ .|||--.+| +.+++|-=-..
T Consensus 6 ~~~~~~v~~el~~t~~d~~-LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie-~~V~~LE~~v~ 83 (99)
T PF10046_consen 6 SKVSKYVESELEATNEDYN-LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIE-EQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4444555666777888886 999999998887 34788899999999999988643 455555555 45777666667
Q ss_pred HHHHHHHHHHHhhhh
Q 009484 475 ELRQKSLEMEWKLKS 489 (533)
Q Consensus 475 elr~~~~e~e~~lks 489 (533)
+|=.-+.++|.|+|.
T Consensus 84 ~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 84 ELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHhhc
Confidence 777778888888875
No 86
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=61.04 E-value=25 Score=38.39 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=50.2
Q ss_pred eccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHH--HHHHHHHHhhhhhh
Q 009484 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET--LQQAILSERERLTQ 468 (533)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~--lqqavl~erer~tq 468 (533)
|+|+-.||-.+-..||+|.+. |-+|.-.--..-|+|||.+-|.--|-.+|. +---+-.||||+||
T Consensus 87 pl~iL~~mM~qcKnmQe~~~s-------------~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~Q 153 (561)
T KOG1103|consen 87 PLDILDKMMAQCKNMQENAAS-------------LLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQ 153 (561)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 778888888888888888542 223332222344789999998887777764 44445567888875
Q ss_pred -hhcchHHHHH
Q 009484 469 -MQWDMEELRQ 478 (533)
Q Consensus 469 -~qwdmeelr~ 478 (533)
+.+..||-|+
T Consensus 154 QiEFe~~e~kK 164 (561)
T KOG1103|consen 154 QIEFEIEEKKK 164 (561)
T ss_pred HHHHHHHHHHH
Confidence 5666666654
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.89 E-value=25 Score=35.10 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHhhhhHHHH
Q 009484 400 RVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430 (533)
Q Consensus 400 rvl~t~~~rl~taktdmedliarlnqe~avk 430 (533)
-.|-.+++.|..+|+.+.++...+||+.|..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445677777777777777777777666543
No 88
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=60.86 E-value=39 Score=41.34 Aligned_cols=103 Identities=23% Similarity=0.270 Sum_probs=67.0
Q ss_pred hcccHHHHHHHhhhhHHHH----------HHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHH
Q 009484 412 AKTDMEDLITRLNQEMTVK----------DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481 (533)
Q Consensus 412 aktdmedliarlnqe~avk----------~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~ 481 (533)
.+.|+|+++++++++=.++ +-||.|+.|+|.+.+..+++-++.++...-.-+++....+=...++|.+..
T Consensus 340 e~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 419 (1201)
T PF12128_consen 340 EDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIE 419 (1201)
T ss_pred HHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999886654 478999999999999999998888877666666666666555555555544
Q ss_pred HHHHhhhhccc----cchhhh--hhhhhcCchhhhHhhh
Q 009484 482 EMEWKLKSKQC----CRMETH--MQSQWKNPLSRIKMCC 514 (533)
Q Consensus 482 e~e~~lks~~~----~~~~~~--~~~~~~~~~~~~~~~~ 514 (533)
+-...|..+.. ...+.. .+.+.+.-+.+.++.+
T Consensus 420 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 458 (1201)
T PF12128_consen 420 EEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQL 458 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433322 222211 2234555566666544
No 89
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=57.82 E-value=29 Score=33.47 Aligned_cols=90 Identities=28% Similarity=0.354 Sum_probs=70.0
Q ss_pred chhhHhHHHHHHHHHHHhhcc----cHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhh
Q 009484 394 QRHKLSRVLLTMERRLVTAKT----DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM 469 (533)
Q Consensus 394 ~r~kl~rvl~t~~~rl~takt----dmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~ 469 (533)
|=.-|.|.|.|..=|--.++. -..+|-.+|+|-----.=|..+|.|.|-.|++...-.+..+|+.|++=-.|+
T Consensus 78 Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL--- 154 (173)
T PF07445_consen 78 QIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRL--- 154 (173)
T ss_pred HHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH---
Confidence 334566666666655555555 6788999998876666668999999999999887778999999998877775
Q ss_pred hcchHHHHHHHHHHHHhhhhc
Q 009484 470 QWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 470 qwdmeelr~~~~e~e~~lks~ 490 (533)
--||.+...+|..+.-.
T Consensus 155 ----~RCr~Ai~~iE~~I~~~ 171 (173)
T PF07445_consen 155 ----QRCRQAIEKIEEQIQRR 171 (173)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 46999999999887644
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.10 E-value=64 Score=36.86 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=44.1
Q ss_pred ccCCceEEeecc------------chhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhh
Q 009484 382 FSGDAELVIPLD------------QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ 449 (533)
Q Consensus 382 ~~~d~~~~lp~d------------~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~ 449 (533)
...|..||.|-. ++..|......+++....-+..+++|-+-|+++----+=|..++++|....+..+.
T Consensus 127 ~~~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~ 206 (546)
T PF07888_consen 127 GNSDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKE 206 (546)
T ss_pred CCcceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888732 12222333333333333333333333333333333333334444444433333222
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Q 009484 450 KSKETLQQAILSERERLTQMQWDMEELRQKSLEME 484 (533)
Q Consensus 450 ~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e 484 (533)
. ++.|+...-.-++|+.++.=|+..|.++..|+|
T Consensus 207 E-~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 207 E-RESLKEQLAEARQRIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222222235566666666666666665554
No 91
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.70 E-value=54 Score=38.54 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHH
Q 009484 400 RVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE 453 (533)
Q Consensus 400 rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke 453 (533)
.|+..-++-+...+.++|+||+.|+++-.-=+-....+..+..|++..+++-++
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 550 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQ 550 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777788888999999999876654333333333444444444444333
No 92
>PRK09039 hypothetical protein; Validated
Probab=55.01 E-value=45 Score=35.40 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=15.0
Q ss_pred hhcchHHHHHHHHHHHHhhhhccccc
Q 009484 469 MQWDMEELRQKSLEMEWKLKSKQCCR 494 (533)
Q Consensus 469 ~qwdmeelr~~~~e~e~~lks~~~~~ 494 (533)
++=.++.||.++..+|.-|..-+...
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666666666666665554433
No 93
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.96 E-value=67 Score=37.43 Aligned_cols=96 Identities=22% Similarity=0.208 Sum_probs=71.8
Q ss_pred eEEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHH----------HhhhhcccchhhhHHhhhhhHHHHH
Q 009484 387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKD----------YLMTKVKDLEVELETTKQKSKETLQ 456 (533)
Q Consensus 387 ~~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~----------~l~tkvkdlevelett~~~~ke~lq 456 (533)
.+.+..++-.++..-+.++...|+..+.+.+.++..|--.-+-+. =+..+++.|+...++.+++ -..||
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l~ 247 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKK-IQALQ 247 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHH-HHHHH
Confidence 344677888999999999999999999999998887744111111 2667888999999988888 77888
Q ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHH
Q 009484 457 QAILSERERLTQMQWDMEELRQKSLEM 483 (533)
Q Consensus 457 qavl~erer~tq~qwdmeelr~~~~e~ 483 (533)
|.+...+....++-=++.++.+.+.+.
T Consensus 248 ~~l~~l~~~~~~l~~~~~~~~~~~~~~ 274 (670)
T KOG0239|consen 248 QELEELKAELKELNDQVSLLTREVQEA 274 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777666666665555443
No 94
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=51.54 E-value=63 Score=39.37 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhh
Q 009484 403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (533)
Q Consensus 403 ~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~ 448 (533)
..+++.+........+|-++++.-...++-+..++.+++.+++..+
T Consensus 761 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1163)
T COG1196 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444445666677777877777776
No 95
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.52 E-value=84 Score=31.05 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=18.0
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHH
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKD 431 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~ 431 (533)
+..+...+.|+.. |+.-=-|+..|.+|||.=+.+|+
T Consensus 68 ~~~f~~~~~tl~~-LE~~GFnV~~l~~RL~kLL~lk~ 103 (190)
T PF05266_consen 68 RSSFESLMKTLSE-LEEHGFNVKFLRSRLNKLLSLKD 103 (190)
T ss_pred HHHHHHHHHHHHH-HHHcCCccHHHHHHHHHHHHHHH
Confidence 3444444444432 44445555555555555555554
No 96
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=49.24 E-value=91 Score=31.97 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 009484 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (533)
Q Consensus 399 ~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~q 470 (533)
.|+...|+++|...+.-++.|..||-...... ...++...+..|+..+++-+-.+++.+-..++++.+++
T Consensus 157 ~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~--p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~ 226 (319)
T PF02601_consen 157 QRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRL--PERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777665544211 34567778888899999988899999998898888876
No 97
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=48.72 E-value=1.2e+02 Score=28.94 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhh-hhhcchHHH
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT-QMQWDMEEL 476 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~t-q~qwdmeel 476 (533)
+.+.+.+|++.|..+.+=++++-..++ .+-.|++=..|=..|++- +..+..-++..-..+...|.|+- ..+=-|++|
T Consensus 57 lp~~~~~~~~~L~~l~~~l~~a~~~~~-~l~~~e~~~~~~~~l~~~-~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l 134 (145)
T PF14942_consen 57 LPRCIELMQQNLEQLLERLQAANSMCS-RLQQKEQEKQKDDYLQAN-REQRKQEWEEFMKEQQQKKQRVDEEFREKEERL 134 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555555554443 344555555553333322 22333344444455555666664 355668999
Q ss_pred HHHHHHHHHhh
Q 009484 477 RQKSLEMEWKL 487 (533)
Q Consensus 477 r~~~~e~e~~l 487 (533)
+-+|.+||.+|
T Consensus 135 ~e~Y~~~~~~l 145 (145)
T PF14942_consen 135 KEQYSEMEKKL 145 (145)
T ss_pred HHHHHHHhhcC
Confidence 99999999876
No 98
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.65 E-value=60 Score=35.40 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=44.0
Q ss_pred chhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhh
Q 009484 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466 (533)
Q Consensus 394 ~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~ 466 (533)
++.++.+-+..+++++.+.+.++++++.++++=-+-.+-|...+.++|.+|+.+.++-++.-.+---.++|+.
T Consensus 331 ~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666777766666666666666666666666666666655555444444444443
No 99
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.58 E-value=1.4e+02 Score=28.08 Aligned_cols=94 Identities=17% Similarity=0.328 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhH-HHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHH
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEM-TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL 476 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~-avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeel 476 (533)
+.-+|=..+|=|..|-+.+--=+.-+...+ +.|..|+-++..|...||....-.+. ++.-|..=|+-+.+++=|++.+
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~-i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQ-IKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHH
Confidence 344555556666666555433333333333 68999999999999999988765544 4555677799999999999999
Q ss_pred HHHHHHHHHhhhhccc
Q 009484 477 RQKSLEMEWKLKSKQC 492 (533)
Q Consensus 477 r~~~~e~e~~lks~~~ 492 (533)
......||.|+.+.+.
T Consensus 109 ~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 109 QQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987653
No 100
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=45.62 E-value=50 Score=38.48 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=41.5
Q ss_pred hhhhcccchhhhHHhhhhhHHHHHHHHHHH---hhhhhhhhcchHHHHHHHHHHHHh-hhhc
Q 009484 433 LMTKVKDLEVELETTKQKSKETLQQAILSE---RERLTQMQWDMEELRQKSLEMEWK-LKSK 490 (533)
Q Consensus 433 l~tkvkdlevelett~~~~ke~lqqavl~e---rer~tq~qwdmeelr~~~~e~e~~-lks~ 490 (533)
|.+-|-|||.++..+=+.-|+.++=|+-=| ..=+-.++++||+|=+.|+|||++ ++|-
T Consensus 96 l~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp 157 (683)
T PF08580_consen 96 LIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSP 157 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 556667777777777777777777775321 334567899999999999999864 4443
No 101
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.54 E-value=48 Score=30.79 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHhhhhcccchhhhHHhhhhh-HHHHHHHHHHHhh
Q 009484 431 DYLMTKVKDLEVELETTKQKS-KETLQQAILSERE 464 (533)
Q Consensus 431 ~~l~tkvkdlevelett~~~~-ke~lqqavl~ere 464 (533)
..+..+|..|.++||.++... .++.+|+...|..
T Consensus 93 ~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~ 127 (139)
T PF13935_consen 93 EDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGE 127 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356778999999999999988 7888888888765
No 102
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=44.93 E-value=74 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=18.0
Q ss_pred HHHHhhhhhhhhcchHHHHHHHHHHHHhhhhc
Q 009484 459 ILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 459 vl~erer~tq~qwdmeelr~~~~e~e~~lks~ 490 (533)
+-.-++++.+++..+++++.+..+++..+...
T Consensus 903 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l 934 (1179)
T TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGL 934 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666666666666665555443
No 103
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.72 E-value=40 Score=30.08 Aligned_cols=69 Identities=26% Similarity=0.428 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Q 009484 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480 (533)
Q Consensus 401 vl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~ 480 (533)
+...|.++.++ |.|++.|-+|+.+ ...+|..||.+++..=- +.=+++++=.|.++|-.+
T Consensus 23 ~~~~l~~~~a~-~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt-------------~~dv~~L~l~l~el~G~~ 81 (106)
T PF10805_consen 23 FWLWLRRTYAK-REDIEKLEERLDE-------HDRRLQALETKLEHLPT-------------RDDVHDLQLELAELRGEL 81 (106)
T ss_pred HHHHHHHhhcc-HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHhHH
Confidence 34557777766 8899998877764 35566667777665411 123566777778888888
Q ss_pred HHHHHhhhhc
Q 009484 481 LEMEWKLKSK 490 (533)
Q Consensus 481 ~e~e~~lks~ 490 (533)
.+|+.+|++.
T Consensus 82 ~~l~~~l~~v 91 (106)
T PF10805_consen 82 KELSARLQGV 91 (106)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=44.57 E-value=31 Score=40.38 Aligned_cols=63 Identities=33% Similarity=0.468 Sum_probs=46.9
Q ss_pred hhhhHHHH-HHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhcccc
Q 009484 423 LNQEMTVK-DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCC 493 (533)
Q Consensus 423 lnqe~avk-~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~ 493 (533)
|=||.|-| .||+.+|.+||.||-.+|+..-. +..|+||++++. -+|+..|..+|...+...+|
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~-----~~~e~~rl~~~~---~~~~~~~~~~e~~~~~lr~e 84 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSN-----VQAENERLSQLN---QELRKECEDLELERKRLREE 84 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44777777 49999999999999988775432 468999999986 45677777777665554443
No 105
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.04 E-value=43 Score=35.75 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=63.1
Q ss_pred eccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 009484 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (533)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~q 470 (533)
|...-..|-.+|.-.+.|--.-+++.++|-.||+----==..|-.+..+.++..+..- ++... .|||.+-.
T Consensus 63 ~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--~~~~~-----~ere~lV~-- 133 (319)
T PF09789_consen 63 PEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--ARHFP-----HEREDLVE-- 133 (319)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--ccccc-----hHHHHHHH--
Confidence 3445566777777777777777777777776665311111245555566555554432 22222 77776533
Q ss_pred cchHHHHHHHHHHHHhhhhccccchhhhh
Q 009484 471 WDMEELRQKSLEMEWKLKSKQCCRMETHM 499 (533)
Q Consensus 471 wdmeelr~~~~e~e~~lks~~~~~~~~~~ 499 (533)
.+|.++.++.++|..+++--||..|.-.
T Consensus 134 -qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 134 -QLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999999887543
No 106
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.04 E-value=86 Score=28.92 Aligned_cols=89 Identities=19% Similarity=0.374 Sum_probs=47.1
Q ss_pred HHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhh-------------HHHHHHHHHHHhhhhhhhhc
Q 009484 405 MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS-------------KETLQQAILSERERLTQMQW 471 (533)
Q Consensus 405 ~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~-------------ke~lqqavl~erer~tq~qw 471 (533)
..+|-.....++++-+.+|..++ +.|+..|..|+.+++...++. -..++.++-.|+|=+..++=
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~---~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDI---ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666555 456666666666555544432 12455566666666666665
Q ss_pred chHHHHHHHHHHHHhhhhccccchhh
Q 009484 472 DMEELRQKSLEMEWKLKSKQCCRMET 497 (533)
Q Consensus 472 dmeelr~~~~e~e~~lks~~~~~~~~ 497 (533)
.+...+.+| +-|++=|-.+-+++..
T Consensus 123 ~~~~~~tq~-~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 123 QLQQRKTQY-EHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555544443 3444444444444333
No 107
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.81 E-value=1.6e+02 Score=31.16 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHH----------HHHHHHHHHhhhhhhhh
Q 009484 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE----------TLQQAILSERERLTQMQ 470 (533)
Q Consensus 401 vl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke----------~lqqavl~erer~tq~q 470 (533)
+...+.+-+..-+.|-+-|...+++---++.=|..|...|+.|++..++-..| .++..+...-.-++.++
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566666666666666666666777777788888777665554 23334444444555555
Q ss_pred cchHHHHHHHHHHHHhhhhccccchhhhhhhhhcCchhhhHhhhhhhh
Q 009484 471 WDMEELRQKSLEMEWKLKSKQCCRMETHMQSQWKNPLSRIKMCCRSWM 518 (533)
Q Consensus 471 wdmeelr~~~~e~e~~lks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (533)
=+.++++.+..+.+.+++.....+.+.--+ -+-+.++.-=||.|-
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~---I~~ae~~~~~~r~~t 269 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTE---IAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCC
Confidence 556666666666666666555555543222 122344555577774
No 108
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=43.63 E-value=22 Score=30.86 Aligned_cols=47 Identities=30% Similarity=0.320 Sum_probs=30.4
Q ss_pred HhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 009484 422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (533)
Q Consensus 422 rlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~q 470 (533)
.+-++.+..-=|. -|-|+|.|||.-|.+-| -|||-|-.||=|+.-+|
T Consensus 14 qfp~~~~p~m~l~-svgd~e~eLerCK~sir-rLeqevnkERFrmiYLQ 60 (79)
T PF09036_consen 14 QFPDSEPPVMELR-SVGDIEQELERCKASIR-RLEQEVNKERFRMIYLQ 60 (79)
T ss_dssp HSTTS-------S-SHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HCCccCCcHHHHH-HhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3333334433343 58899999998776655 58999999998887666
No 109
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.49 E-value=83 Score=29.36 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=44.8
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchH
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDME 474 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdme 474 (533)
|+.+-.-+.++++.+...++..+.|-+.=+..-+=.+-|..+|..+|.+++..+... +.+-+.+..|-+||.+ +-..
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~-~~i~~~~~~El~~f~~--~~~~ 188 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRY-EEISERLKEELKRFHE--ERAR 188 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHH
Confidence 333333344444444444444444433222122334455666667777777766544 4456788899999973 4455
Q ss_pred HHHHHHH
Q 009484 475 ELRQKSL 481 (533)
Q Consensus 475 elr~~~~ 481 (533)
+++....
T Consensus 189 dlk~~l~ 195 (218)
T cd07596 189 DLKAALK 195 (218)
T ss_pred HHHHHHH
Confidence 5555443
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.49 E-value=51 Score=37.08 Aligned_cols=93 Identities=23% Similarity=0.315 Sum_probs=60.1
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHH---HHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcc
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDL---ITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWD 472 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedl---iarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwd 472 (533)
+.+.+-+..+..-|..++...+.| |.||+|..-.-+--...|+.|+.+|+......++ ++++|-.-...++.++=.
T Consensus 306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~-~~~~i~~~~~~ysel~e~ 384 (569)
T PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE-ITERIAEQEIAYSELQEE 384 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHH
Confidence 334444444444444444433333 6677777666556666788888888888877775 556676666678888878
Q ss_pred hHHHHHHHHHHHHhhhh
Q 009484 473 MEELRQKSLEMEWKLKS 489 (533)
Q Consensus 473 meelr~~~~e~e~~lks 489 (533)
++++..++-+++.....
T Consensus 385 leel~e~leeie~eq~e 401 (569)
T PRK04778 385 LEEILKQLEEIEKEQEK 401 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777776665443
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.17 E-value=1.5e+02 Score=29.31 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=47.4
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHH-----HH---HHhhhhcccchhhhHHhhhhhHHHHHHHH
Q 009484 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT-----VK---DYLMTKVKDLEVELETTKQKSKETLQQAI 459 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~a-----vk---~~l~tkvkdlevelett~~~~ke~lqqav 459 (533)
.+-+..-+++ |..++..|..++.+-+-|-+++++.++ .. +=+..++.-++..++..+.. -+.+++.|
T Consensus 12 ~~C~~C~~~~----L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~-i~~~~~~i 86 (302)
T PF10186_consen 12 FYCANCVNNR----LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRER-IERLRKRI 86 (302)
T ss_pred eECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444444 777888888888888999999888777 22 22222233333333333222 23344555
Q ss_pred HHHhhhhhhhhcchHHHHHH
Q 009484 460 LSERERLTQMQWDMEELRQK 479 (533)
Q Consensus 460 l~erer~tq~qwdmeelr~~ 479 (533)
-.+|+|+...+=.++..|..
T Consensus 87 ~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 87 EQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444443
No 112
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=42.10 E-value=1.8e+02 Score=27.69 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=39.4
Q ss_pred HHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHh
Q 009484 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWK 486 (533)
Q Consensus 431 ~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~ 486 (533)
+-+|++-++|+.||.+.+ +-|++|-|-.--.++|+..+.=--.++++.+.+.|..
T Consensus 62 ~~lt~el~~L~~EL~~l~-sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 62 EELTSELNQLELELDTLR-SEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 347888999999999988 5577888887777777766655555555555555443
No 113
>PF03082 MAGSP: Male accessory gland secretory protein; InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered [].; GO: 0007618 mating, 0005576 extracellular region
Probab=41.59 E-value=45 Score=34.25 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=37.6
Q ss_pred Eeeccchh--hHhHHHHHHHHHHHhhcccHHH---HHHHhhhhHHHHHHhhhhcc----cchhhhHHhhhhhHH
Q 009484 389 VIPLDQRH--KLSRVLLTMERRLVTAKTDMED---LITRLNQEMTVKDYLMTKVK----DLEVELETTKQKSKE 453 (533)
Q Consensus 389 ~lp~d~r~--kl~rvl~t~~~rl~taktdmed---liarlnqe~avk~~l~tkvk----dlevelett~~~~ke 453 (533)
+||++.+. +++-.|-++|+||.+-++---= .-.-|=.|+-||.-=--|++ |||+||++..+|--|
T Consensus 111 ~~p~~~~~~~~~q~alraLqqrL~~E~n~s~~fRN~SV~LM~Eie~rK~eIl~~Rq~NldLE~eLndanRkilE 184 (264)
T PF03082_consen 111 DFPAKKRNNGSNQNALRALQQRLLLEQNNSFMFRNISVALMKEIEARKTEILKARQSNLDLELELNDANRKILE 184 (264)
T ss_pred CcchhhhccchHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHHHhhCCceeeehhHHHHHHHH
Confidence 45655553 6788899999999988765211 11123334444432222332 778888777665444
No 114
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=41.50 E-value=83 Score=31.40 Aligned_cols=87 Identities=23% Similarity=0.333 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHH--------------------HHHH
Q 009484 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ--------------------AILS 461 (533)
Q Consensus 402 l~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqq--------------------avl~ 461 (533)
+...+.|+..+...+++.-.|+.+-=+==.=|+.|+..||.+|+.+.++..+..++ -...
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~ 89 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS 89 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34445566666666555554444333333357777777777777776655444332 2233
Q ss_pred HhhhhhhhhcchHHHHHHHHHHHHhhh
Q 009484 462 ERERLTQMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 462 erer~tq~qwdmeelr~~~~e~e~~lk 488 (533)
-=+|+.++.+.+.+.+..+.+.+.++.
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777776665555554443
No 115
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=41.27 E-value=1e+02 Score=34.04 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=51.5
Q ss_pred hhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-----hhhhcc------
Q 009484 423 LNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEW-----KLKSKQ------ 491 (533)
Q Consensus 423 lnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~-----~lks~~------ 491 (533)
-|-..|...-|.-|+|-||+|++.+|--|--.= .++++ +.|..+.||+-=..++...--|. .|+-.|
T Consensus 151 Nksc~al~~~L~~k~Ktle~E~~kek~vctkdK-E~ll~-~kr~~e~Q~~~C~k~re~q~qe~QLae~~lq~vq~~C~pL 228 (442)
T PF06637_consen 151 NKSCNALLLMLNQKAKTLEVELAKEKAVCTKDK-EGLLL-SKRQVEEQLEECGKAREQQQQERQLAEEQLQKVQALCLPL 228 (442)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344667777899999999999998886553222 22333 34666777764333333333333 333332
Q ss_pred -ccchhhhhhhhhcCc
Q 009484 492 -CCRMETHMQSQWKNP 506 (533)
Q Consensus 492 -~~~~~~~~~~~~~~~ 506 (533)
.++.++.+..-|..-
T Consensus 229 Dkdk~~~~l~~lWRDS 244 (442)
T PF06637_consen 229 DKDKFETDLRNLWRDS 244 (442)
T ss_pred chHHHHHHHHHHHHHH
Confidence 378899999999875
No 116
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.23 E-value=58 Score=31.90 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCceEEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHH
Q 009484 384 GDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430 (533)
Q Consensus 384 ~d~~~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk 430 (533)
+..--.||++.++++.+.+..+++.+...+.-.++|-++|..+.+.|
T Consensus 53 sn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 53 SNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred eeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44567899999999999999999999988888888888887664443
No 117
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.96 E-value=1.9e+02 Score=28.69 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=50.4
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHH---HHHHhhhhhhhhcc
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQA---ILSERERLTQMQWD 472 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqa---vl~erer~tq~qwd 472 (533)
..|+.=+..|+.+....+..|.|+.+.-.+=+.-=.=+...|..|..+|.. -.+.|..|+.+ +-.=.+.+..+.|+
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-YEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899988888888888776332222222233444445554443 22344444332 11113445566677
Q ss_pred hHHHHHHHHHHHHh
Q 009484 473 MEELRQKSLEMEWK 486 (533)
Q Consensus 473 meelr~~~~e~e~~ 486 (533)
-|.|.+++..+|..
T Consensus 109 ~evL~qr~~kle~E 122 (201)
T PF13851_consen 109 HEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666543
No 118
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.79 E-value=1.2e+02 Score=30.63 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=40.8
Q ss_pred hhcccchhhhHHhhhhhHHHHHHHHH-HHhhh--------hhhhhcchHHHHHHHHHHHHhhhhccccch
Q 009484 435 TKVKDLEVELETTKQKSKETLQQAIL-SERER--------LTQMQWDMEELRQKSLEMEWKLKSKQCCRM 495 (533)
Q Consensus 435 tkvkdlevelett~~~~ke~lqqavl-~erer--------~tq~qwdmeelr~~~~e~e~~lks~~~~~~ 495 (533)
.+|+-.|.-.+++|....+.|++|=- +++-| --|.++..++++..+++-.+.-|+++++..
T Consensus 125 ~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 125 ERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666631 11111 147788999999999998888888877643
No 119
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.44 E-value=76 Score=33.90 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=64.0
Q ss_pred HHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhcccc-chh
Q 009484 418 DLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCC-RME 496 (533)
Q Consensus 418 dliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~-~~~ 496 (533)
-.|||||-|...|.=|..+.+.|+ +.|+.|++.+-.=|+++.++.=.++.|.+++.-+...|..--+. ...
T Consensus 91 lml~RL~~EL~~Rk~L~~~~~el~--------~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~~~~~~~ 162 (355)
T PF09766_consen 91 LMLARLEFELEQRKRLEEQLKELE--------QRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPHTKKRKQ 162 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccchhhh
Confidence 368999999999976666655554 34677888899999999999999999999999998888665444 333
Q ss_pred hhhhhhhcCchhhh
Q 009484 497 THMQSQWKNPLSRI 510 (533)
Q Consensus 497 ~~~~~~~~~~~~~~ 510 (533)
.+.-..-..||--|
T Consensus 163 ~~~a~~LP~PLyvL 176 (355)
T PF09766_consen 163 HELAELLPPPLYVL 176 (355)
T ss_pred HHHHHhCCccHHHH
Confidence 34445556677554
No 120
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.62 E-value=1.8e+02 Score=28.78 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=55.2
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHH---hhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhh------
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITR---LNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQ------ 468 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliar---lnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq------ 468 (533)
|+..+--|+.=|..+|..+.++||. |.++++ =+..++.++|..-+.-=++++|.|-...|.++..+.+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~---~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVS---RLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777663 333322 2344566666666677777888888888777765433
Q ss_pred -----hhcchHHHHHHHHHHHHhhhhc
Q 009484 469 -----MQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 469 -----~qwdmeelr~~~~e~e~~lks~ 490 (533)
++=-+++|+.++.+||.++..-
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555666666666655443
No 121
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.31 E-value=1e+02 Score=33.33 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhh
Q 009484 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQ 468 (533)
Q Consensus 399 ~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq 468 (533)
.|+...|+++|...+..++.|..||.. .....++..+..+|+...++....|++-+-.-+.|+.+
T Consensus 274 ~rL~~a~~~~L~~~~~~L~~L~~rL~~-----~~P~~~l~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~ 338 (438)
T PRK00286 274 QRLARAMRRRLEQKRQRLDQLARRLKF-----QSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLER 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888899999888888888751 12234455666777777777777777776666666554
No 122
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=37.49 E-value=49 Score=32.69 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=37.3
Q ss_pred HHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhh
Q 009484 420 ITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT 467 (533)
Q Consensus 420 iarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~t 467 (533)
+-++++|.++ +||+.|+.+|+.++|.-+..+ +..-+.++.|=+||-
T Consensus 119 ~~q~~~e~~~-~~L~~k~~~l~~~ve~a~~~~-e~f~~~~~~E~~rF~ 164 (201)
T cd07622 119 LLQYDLEKAE-DALANKKQQGEEAVKEAKDEL-NEFVKKALEDVERFK 164 (201)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3478888888 999999999999999887644 455668889999985
No 123
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.00 E-value=3.5e+02 Score=29.89 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=55.3
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhh-------hhcccchhhhHHhh---hhhHHHHHHHH--HHH-
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLM-------TKVKDLEVELETTK---QKSKETLQQAI--LSE- 462 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~-------tkvkdlevelett~---~~~ke~lqqav--l~e- 462 (533)
.++..=|..++.....-..+||+|=..+=+|+. |++ .|-..||..|...- |.--.||+|.+ +.|
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~---~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQ---FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444445666677777777888888877776653 333 24455776665443 34445666653 334
Q ss_pred -----hhhhhhhhcchHHHHHHHHHHH
Q 009484 463 -----RERLTQMQWDMEELRQKSLEME 484 (533)
Q Consensus 463 -----rer~tq~qwdmeelr~~~~e~e 484 (533)
.||+-.+|=-||-|-.+...||
T Consensus 292 ~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 292 MAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4777777777888888888888
No 124
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=36.65 E-value=1.8e+02 Score=31.18 Aligned_cols=90 Identities=26% Similarity=0.344 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhhh--HHHHHHhhhhcc-------cchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhc
Q 009484 401 VLLTMERRLVTAKTDMEDLITRLNQE--MTVKDYLMTKVK-------DLEVELETTKQKSKETLQQAILSERERLTQMQW 471 (533)
Q Consensus 401 vl~t~~~rl~taktdmedliarlnqe--~avk~~l~tkvk-------dlevelett~~~~ke~lqqavl~erer~tq~qw 471 (533)
|-+|+-+||...|-+-|+|+-.+=|| ..+ .=|..|+. +||.-||.-+..-=..|+..|..=+-.....|=
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EEE~lt-n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEEEFLT-NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55677778888888888887666663 221 12233332 333333332222223444443322222245666
Q ss_pred chHHHHHHHHHHHHhhhhcc
Q 009484 472 DMEELRQKSLEMEWKLKSKQ 491 (533)
Q Consensus 472 dmeelr~~~~e~e~~lks~~ 491 (533)
.++-||+.--++|..|..+|
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQ 176 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQ 176 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 66777777777777776665
No 125
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.39 E-value=1.3e+02 Score=35.62 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHhhhhHHHH
Q 009484 400 RVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430 (533)
Q Consensus 400 rvl~t~~~rl~taktdmedliarlnqe~avk 430 (533)
.|+..-++.+.....++|+||.+|+++-.--
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~ 532 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELEREL 532 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4777777888888889999999998865543
No 126
>PRK11637 AmiB activator; Provisional
Probab=35.56 E-value=1e+02 Score=33.22 Aligned_cols=46 Identities=11% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccccchhhhhhhhhc
Q 009484 458 AILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCCRMETHMQSQWK 504 (533)
Q Consensus 458 avl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~~~~~~~~~~~~ 504 (533)
.|-.=.+.+..++-+++++..+..+.|.+|+..++ .+...+...++
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~-~l~~rlra~Y~ 135 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER-LLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33333445666666677777777776666665443 34445555555
No 127
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=35.10 E-value=1.5e+02 Score=30.07 Aligned_cols=122 Identities=27% Similarity=0.360 Sum_probs=82.1
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHH--HHHHhhhhcccchhhhHHhhhhh---HHHHHHHHH---------
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT--VKDYLMTKVKDLEVELETTKQKS---KETLQQAIL--------- 460 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarlnqe~a--vk~~l~tkvkdlevelett~~~~---ke~lqqavl--------- 460 (533)
..|+..+|..+|.+|.+|-. +||.-+. .=+=|-..|..+|.+|+.+|+.. |....+||-
T Consensus 4 ~~~~~~~~d~lq~~i~~as~-------~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEv 76 (207)
T PF05546_consen 4 SKKLSFYMDSLQETIFTASQ-------ALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREV 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998764 4554332 12336677888999999998764 555666653
Q ss_pred ---HHh---------hhhhhhh-------cchHHHHHHHHHHHHhhhhccccchhh-----hhhhhhcCchhhhHhhhhh
Q 009484 461 ---SER---------ERLTQMQ-------WDMEELRQKSLEMEWKLKSKQCCRMET-----HMQSQWKNPLSRIKMCCRS 516 (533)
Q Consensus 461 ---~er---------er~tq~q-------wdmeelr~~~~e~e~~lks~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 516 (533)
-.| ||||.+= =..+++..++.++|.++....++=+.. |--.-|..-+.|.--+ -+
T Consensus 77 n~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~STw-gT 155 (207)
T PF05546_consen 77 NELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRASTW-GT 155 (207)
T ss_pred HHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HH
Confidence 334 7888763 235677888899999988887765543 5555677766655443 36
Q ss_pred hhhhcccc
Q 009484 517 WMLLKSNL 524 (533)
Q Consensus 517 ~~~~~~~~ 524 (533)
|.|+--|+
T Consensus 156 ~~lmgvNv 163 (207)
T PF05546_consen 156 WGLMGVNV 163 (207)
T ss_pred HHHHHHHH
Confidence 66665554
No 128
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=33.58 E-value=1.7e+02 Score=34.28 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=7.8
Q ss_pred hHhHHHHHHHHHHHhhcc
Q 009484 397 KLSRVLLTMERRLVTAKT 414 (533)
Q Consensus 397 kl~rvl~t~~~rl~takt 414 (533)
.+..-+..++..+..++.
T Consensus 681 ~l~~~~~~l~~~l~~~~~ 698 (1179)
T TIGR02168 681 ELEEKIEELEEKIAELEK 698 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 129
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=32.88 E-value=50 Score=26.83 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHH--HhhcccHHHHHHHhhhhH
Q 009484 398 LSRVLLTMERRL--VTAKTDMEDLITRLNQEM 427 (533)
Q Consensus 398 l~rvl~t~~~rl--~taktdmedliarlnqe~ 427 (533)
|+++...+++-+ .....+++|+|.+||+-+
T Consensus 1 ik~~~~kik~~~~~~~~~~~~~~~i~~LN~~l 32 (80)
T PF08388_consen 1 IKRFRRKIKEITRRRNRGKSLEELIKKLNPIL 32 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 356666666655 224579999999999854
No 130
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.49 E-value=2.2e+02 Score=27.76 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=30.5
Q ss_pred hcccchhhhHHhhhhhHHHHHHHHHHHhhhh-----------hhhhcchHHHHHHHHHHHHhhhhccccc
Q 009484 436 KVKDLEVELETTKQKSKETLQQAILSERERL-----------TQMQWDMEELRQKSLEMEWKLKSKQCCR 494 (533)
Q Consensus 436 kvkdlevelett~~~~ke~lqqavl~erer~-----------tq~qwdmeelr~~~~e~e~~lks~~~~~ 494 (533)
++.++|...+.--++.+|.|-...+.++..+ .+..=..+.|+..+.+||.+++..+..+
T Consensus 66 ~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 66 EAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555666665666555442 2222334556666666666665554443
No 131
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.84 E-value=1.3e+02 Score=34.00 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=33.3
Q ss_pred eccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 009484 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (533)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~q 470 (533)
|.|-=.-|--=+..++.|+.++..|=++|.++-+ .|....++-....||||-.||.++++-|
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~------------------~L~~r~~~id~~i~~av~~~~~~~~~~~ 118 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENE------------------RLQKREQSIDQQIQQAVQSETQELTKEI 118 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhhhHHHHHHHHHHhhhHHHHHHH
Confidence 4443333333334455555555555555554432 2333344556778888888888777533
No 132
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=31.18 E-value=33 Score=39.72 Aligned_cols=74 Identities=26% Similarity=0.234 Sum_probs=53.4
Q ss_pred hhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccccchh--hhhhhhhcCchhhhHhhhh
Q 009484 442 VELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCCRME--THMQSQWKNPLSRIKMCCR 515 (533)
Q Consensus 442 velett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~~~~--~~~~~~~~~~~~~~~~~~~ 515 (533)
+||-.-=.--|.+||-.|-.-|++|....=+||||.+|..|--..-|.-----+| -.||..|+-|.|-.|.||-
T Consensus 214 ~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkmke~p~e~k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~ 289 (812)
T KOG1451|consen 214 SELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKMKESPTEDKRPTPSTKEGYLYMQEKSKIGKSWVKYYCV 289 (812)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCcccccCCCCcccceeeeehhhhhccchhhhheeE
Confidence 3443333445778888888899999999999999999988754422222222222 3699999999999999994
No 133
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.07 E-value=2.1e+02 Score=32.98 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=35.6
Q ss_pred HHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHH---hhhhhhhhcchHHHHHHHHHHHHhhhhc
Q 009484 420 ITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE---RERLTQMQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 420 iarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~e---rer~tq~qwdmeelr~~~~e~e~~lks~ 490 (533)
|.-|+|...=.+=+..+.|++..++|.++-..|+.|+..+..= .-+.-+.|=+++.|+.++.-++..|++-
T Consensus 229 i~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaS 302 (546)
T PF07888_consen 229 IKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQAS 302 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333444555666666666544444444332211 1122344556677777777777766643
No 134
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.96 E-value=3.4e+02 Score=26.85 Aligned_cols=90 Identities=17% Similarity=0.309 Sum_probs=61.9
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhh---hHHHHHHHHHHHhhhhhhhhc
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK---SKETLQQAILSERERLTQMQW 471 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~---~ke~lqqavl~erer~tq~qw 471 (533)
|+.||+ |+.++.+....+-.++.|=.++.++-|-++=+-.+.++||-.+...++. -++.++-+. ..+-+|+=
T Consensus 92 ~~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~----~ei~~lks 166 (190)
T PF05266_consen 92 RSRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD----KEISRLKS 166 (190)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 677888 5556666677777888888888888777788888888888888777664 222222222 33556677
Q ss_pred chHHHHHHHHHHHHhhhh
Q 009484 472 DMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 472 dmeelr~~~~e~e~~lks 489 (533)
+++.+-..|..+|.+-++
T Consensus 167 ~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 167 EAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766544
No 135
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=30.67 E-value=4.1e+02 Score=24.25 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=59.0
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHH------------hhhhhHHHHHHHHHHHh
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELET------------TKQKSKETLQQAILSER 463 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelet------------t~~~~ke~lqqavl~er 463 (533)
..|..||.-=++.-..|+..+-...+++.++-+-=+-|...-.+.+..+.. .-+.--+.|.+||-.-+
T Consensus 5 frL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~ 84 (146)
T PRK07720 5 FRLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQ 84 (146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666566666666555555555544443333333333333333322 23345677888888888
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhhhhc
Q 009484 464 ERLTQMQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 464 er~tq~qwdmeelr~~~~e~e~~lks~ 490 (533)
+.+.+.+=.+|..|++..+..-+.|+-
T Consensus 85 ~~v~~~~~~ve~~r~~~~ea~~~~k~~ 111 (146)
T PRK07720 85 LLVMQAREQMNRKQQDLTEKNIEVKKY 111 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888988889999999998888777664
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.40 E-value=2.3e+02 Score=30.70 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=21.1
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhh
Q 009484 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLN 424 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarln 424 (533)
+++|..+ ..+..-|..+++++..++++.-++-+++.
T Consensus 193 ~~~~~~~-~~~~~~l~~l~~~l~~~~~~l~~~~a~~~ 228 (498)
T TIGR03007 193 GILPDQE-GDYYSEISEAQEELEAARLELNEAIAQRD 228 (498)
T ss_pred ccCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455433 34445567777777777777666555543
No 137
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.24 E-value=1.5e+02 Score=31.00 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=65.9
Q ss_pred HHHHH--HHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHH-HHHHHHHHhhhhhhhhcchHHHHH
Q 009484 402 LLTME--RRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET-LQQAILSERERLTQMQWDMEELRQ 478 (533)
Q Consensus 402 l~t~~--~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~-lqqavl~erer~tq~qwdmeelr~ 478 (533)
|.|+| +-+---|-|.|++-..|-.+++=|+-|-.....||.|+|..+.+-|+- -+.+-|.|. |-.+-=.+..|+.
T Consensus 121 LktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~--~~~l~~ev~~L~~ 198 (290)
T COG4026 121 LKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM--LKKLPGEVYDLKK 198 (290)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhchhHHHHHHH
Confidence 45665 334566888899999999999999999999999999999988776652 223334332 2333446788999
Q ss_pred HHHHHHHhhhhccccc
Q 009484 479 KSLEMEWKLKSKQCCR 494 (533)
Q Consensus 479 ~~~e~e~~lks~~~~~ 494 (533)
+..|+|-++.+-+.++
T Consensus 199 r~~ELe~~~El~e~~~ 214 (290)
T COG4026 199 RWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHhcccccchHHHH
Confidence 9999998877665443
No 138
>PRK02224 chromosome segregation protein; Provisional
Probab=29.98 E-value=1.7e+02 Score=34.06 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=21.5
Q ss_pred EeeccchhhHhH---HHHHHHHHHHhhcccHHHHHHHhhhhHHH
Q 009484 389 VIPLDQRHKLSR---VLLTMERRLVTAKTDMEDLITRLNQEMTV 429 (533)
Q Consensus 389 ~lp~d~r~kl~r---vl~t~~~rl~taktdmedliarlnqe~av 429 (533)
-|+.+.+.+++. -+.++..++..++.+.++|-..++.+-.+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l 511 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI 511 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 35556666666666666555555543333
No 139
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.95 E-value=3.2e+02 Score=22.65 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=55.7
Q ss_pred hHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHH
Q 009484 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL 476 (533)
Q Consensus 397 kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeel 476 (533)
+..+.|...++.+..++.-++.|.+.+.+-.+-.. ... .-.-+..=..-+.....|+++|-.=...+..+.-.++.+
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~--~~~-~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 78 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLS--ESQ-QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQA 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777666554311111 111 112233333456667778888888888888888888888
Q ss_pred HHHHHHHHHhhhhc
Q 009484 477 RQKSLEMEWKLKSK 490 (533)
Q Consensus 477 r~~~~e~e~~lks~ 490 (533)
|..+.+--..+|.-
T Consensus 79 r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 79 REELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776666543
No 140
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.90 E-value=1.7e+02 Score=37.36 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=57.8
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhh
Q 009484 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT 467 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~t 467 (533)
+.=|.+-|..+..++. .+.|...|+.-+++-=.+|.+--.+-..|..+++.||.+++..++.-...- ..+.....++
T Consensus 275 ~r~~eERR~liEEAag-~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e--e~lr~q~ei~ 351 (1486)
T PRK04863 275 MRHANERRVHLEEALE-LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ--TALRQQEKIE 351 (1486)
T ss_pred hhCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4456666777777754 557777777755555555554444458899999999999988876533222 1122234445
Q ss_pred hhhcchHHHHHHHHHHHHhhh
Q 009484 468 QMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 468 q~qwdmeelr~~~~e~e~~lk 488 (533)
+.+-++++|..+..+.+.+|.
T Consensus 352 ~l~~~LeELee~Lee~eeeLe 372 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVE 372 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444443
No 141
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.46 E-value=49 Score=33.38 Aligned_cols=37 Identities=16% Similarity=0.497 Sum_probs=32.0
Q ss_pred hhhHh-HHHHHHHHHHHhhcccHHHHHHHhhhhHHHHH
Q 009484 395 RHKLS-RVLLTMERRLVTAKTDMEDLITRLNQEMTVKD 431 (533)
Q Consensus 395 r~kl~-rvl~t~~~rl~taktdmedliarlnqe~avk~ 431 (533)
.|.|| +-|.++|-.+.+.++|+..||+..|+-||=-+
T Consensus 157 KHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead 194 (201)
T PF11172_consen 157 KHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEAD 194 (201)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 78999999999999999999999999887543
No 142
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=29.40 E-value=2.1e+02 Score=27.74 Aligned_cols=92 Identities=15% Similarity=0.262 Sum_probs=57.7
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHH----hhhhhHHHHHHHHHHHhhhhhhhhcch
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELET----TKQKSKETLQQAILSERERLTQMQWDM 473 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelet----t~~~~ke~lqqavl~erer~tq~qwdm 473 (533)
+.||+..-.++ ..+..|+|++.++-.-|+.. +.+++++++..|+- .....+.-.|+++..|+ -.
T Consensus 32 ~~~i~~~~~~~-k~~~~~le~~f~~~~~~lq~---~~~el~~~~~kL~~~~~~~~~~d~~k~e~~~~~~~--------~~ 99 (170)
T COG2825 32 LGRIFQESPQA-KKVSADLESEFKKRQKELQK---MQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEK--------LV 99 (170)
T ss_pred HHHHHHHcchh-hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHH--------HH
Confidence 45677776666 45567888888887777766 44555555555553 12244444555555442 24
Q ss_pred HHHHHHHHHHHHhhhhccccchhhhhhh
Q 009484 474 EELRQKSLEMEWKLKSKQCCRMETHMQS 501 (533)
Q Consensus 474 eelr~~~~e~e~~lks~~~~~~~~~~~~ 501 (533)
.++++|..+-|..+.-.+.+....++++
T Consensus 100 ~~~~~k~~~~~~~~~~~~~e~~~~~~~~ 127 (170)
T COG2825 100 NAFNKKQQEYEKDLNRREAEEEQKLLEK 127 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888887777766666655543
No 143
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=29.02 E-value=1.4e+02 Score=33.37 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=70.1
Q ss_pred cchhhHhHHHHHHHHHHHhhcccHHHHHH----Hhhhh--H---------------------HHHHHhhhhcccchhhhH
Q 009484 393 DQRHKLSRVLLTMERRLVTAKTDMEDLIT----RLNQE--M---------------------TVKDYLMTKVKDLEVELE 445 (533)
Q Consensus 393 d~r~kl~rvl~t~~~rl~taktdmedlia----rlnqe--~---------------------avk~~l~tkvkdlevele 445 (533)
.+=+.|.|=|..|+|=--..++|+..-|+ .+++= + ..-+=|.|||.||.-=.|
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE 234 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIE 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778777777766666666554443 33321 1 112457899999998888
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhcc
Q 009484 446 TTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ 491 (533)
Q Consensus 446 tt~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~ 491 (533)
..| |++.|.-|-.-...+-.++=||+.++.-+..||..++.+.
T Consensus 235 ~LR---kDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eK 277 (426)
T smart00806 235 ALR---KDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEK 277 (426)
T ss_pred HHH---HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 887 6788888877777888888899999999999998888764
No 144
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.69 E-value=1.2e+02 Score=29.03 Aligned_cols=64 Identities=14% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhhhHH-------------------HHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHH
Q 009484 402 LLTMERRLVTAKTDMEDLITRLNQEMT-------------------VKDYLMTKVKDLEVELETTKQKSKETLQQAILSE 462 (533)
Q Consensus 402 l~t~~~rl~taktdmedliarlnqe~a-------------------vk~~l~tkvkdlevelett~~~~ke~lqqavl~e 462 (533)
+..|+.....-+.|+|-|-++||+|++ ...-+..|+++++-++++.-..-|-- +|
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~------iE 148 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTE------IE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q ss_pred hhhhhhhhc
Q 009484 463 RERLTQMQW 471 (533)
Q Consensus 463 rer~tq~qw 471 (533)
.-|...+||
T Consensus 149 ~~K~~~lr~ 157 (177)
T PF07798_consen 149 SLKWDTLRW 157 (177)
T ss_pred HHHHHHHHH
No 145
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.65 E-value=2.8e+02 Score=28.18 Aligned_cols=18 Identities=17% Similarity=0.245 Sum_probs=10.7
Q ss_pred hhhhhhcchHHHHHHHHH
Q 009484 465 RLTQMQWDMEELRQKSLE 482 (533)
Q Consensus 465 r~tq~qwdmeelr~~~~e 482 (533)
.+.+++++|+..-+.|.+
T Consensus 270 el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 270 ELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666666666655544
No 146
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.55 E-value=1.9e+02 Score=27.73 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=40.2
Q ss_pred HHHHHHHhhcccHHHHHHHhhh-hHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHH
Q 009484 404 TMERRLVTAKTDMEDLITRLNQ-EMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (533)
Q Consensus 404 t~~~rl~taktdmedliarlnq-e~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e 482 (533)
++-+++...+..++.+...... .-++++++..+.+.++.|++..|.+-++ -+=|+|.|+.|+..
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---------------~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---------------KEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 5566777777777766665532 2355666666667777777766655444 23356677777665
Q ss_pred HH
Q 009484 483 ME 484 (533)
Q Consensus 483 ~e 484 (533)
++
T Consensus 187 l~ 188 (192)
T PF05529_consen 187 LQ 188 (192)
T ss_pred HH
Confidence 54
No 147
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.15 E-value=82 Score=36.07 Aligned_cols=70 Identities=23% Similarity=0.389 Sum_probs=51.7
Q ss_pred chhhHhHH---HHHHHHHH----------------HhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHH
Q 009484 394 QRHKLSRV---LLTMERRL----------------VTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET 454 (533)
Q Consensus 394 ~r~kl~rv---l~t~~~rl----------------~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~ 454 (533)
-|++++|+ |.|.+|++ .|+---++||+.+|++---==+=++.+|+--+..+.+.....-+.
T Consensus 415 Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ 494 (570)
T COG4477 415 ARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEV 494 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665 45555554 345556788888888754444456778888889999999999999
Q ss_pred HHHHHHHHh
Q 009484 455 LQQAILSER 463 (533)
Q Consensus 455 lqqavl~er 463 (533)
+|+|+|+|.
T Consensus 495 ve~a~LaE~ 503 (570)
T COG4477 495 VENAVLAEQ 503 (570)
T ss_pred HHHHHHHHH
Confidence 999999995
No 148
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.64 E-value=2.6e+02 Score=33.45 Aligned_cols=62 Identities=31% Similarity=0.318 Sum_probs=39.2
Q ss_pred hHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccccch
Q 009484 426 EMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCCRM 495 (533)
Q Consensus 426 e~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~~~ 495 (533)
+...++.|.|+.+|+|.|+++...|-. .|+--|-.||- - =+|+-.||.++|.+|.+...+..
T Consensus 657 ~~e~~e~le~~~~~~e~E~~~l~~Ki~-~Le~Ele~er~--~-----~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 657 MKESYESLETRLKDLEAEAEELQSKIS-SLEEELEKERA--L-----SEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHh--c-----chhhhhHHHHHHHHHHhhhcccc
Confidence 344566777777777777777666542 34443333332 2 36777888888888887765544
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.38 E-value=82 Score=33.13 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHH
Q 009484 400 RVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQA 458 (533)
Q Consensus 400 rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqa 458 (533)
.++.-|+.++..+..+......=|++-- -.+.....+++++.||+.+++.-++-+++.
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~-~~~~~~~~~~~~~~el~~le~Ee~~l~~eL 66 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLE-EESDSEEDIEELEEELEKLEQEEEELLQEL 66 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444433332221 001223344555555555554444444443
No 150
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=1.4e+02 Score=34.90 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=46.1
Q ss_pred ccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhh-----ccccchhhhhhhhhcCchhhhHh
Q 009484 438 KDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKS-----KQCCRMETHMQSQWKNPLSRIKM 512 (533)
Q Consensus 438 kdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks-----~~~~~~~~~~~~~~~~~~~~~~~ 512 (533)
-.||.+|+..+ ..+.+-++..|| +++++|.++.|++++.|-.+...- .+-.+|-.---|-|-.|+.-|+.
T Consensus 453 e~L~~~l~~~~----r~~~~~~~~~re-i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~ 527 (652)
T COG2433 453 EKLESELERFR----REVRDKVRKDRE-IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEK 527 (652)
T ss_pred HHHHHHHHHHH----HHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhh
Confidence 33444444443 344567777776 889999999999999886554433 34444444344677788877765
Q ss_pred hh
Q 009484 513 CC 514 (533)
Q Consensus 513 ~~ 514 (533)
.-
T Consensus 528 ~t 529 (652)
T COG2433 528 LT 529 (652)
T ss_pred hh
Confidence 43
No 151
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.20 E-value=1.1e+02 Score=35.60 Aligned_cols=87 Identities=28% Similarity=0.456 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhhcccHHHHHHHhhh---h--------HH---HHHHhhhhcccchhhhHHhhhhhHHHHHHHH-----
Q 009484 399 SRVLLTMERRLVTAKTDMEDLITRLNQ---E--------MT---VKDYLMTKVKDLEVELETTKQKSKETLQQAI----- 459 (533)
Q Consensus 399 ~rvl~t~~~rl~taktdmedliarlnq---e--------~a---vk~~l~tkvkdlevelett~~~~ke~lqqav----- 459 (533)
|--|+.|+.-|-.+|. ||||...| | -| ||.-|-.|++.||.||.+.|++.-+.-|.|.
T Consensus 310 NsqLLetKNALNiVKN---DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~d 386 (832)
T KOG2077|consen 310 NSQLLETKNALNIVKN---DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDD 386 (832)
T ss_pred hHHHHhhhhHHHHHHH---HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445566666667775 46665433 2 13 4556888999999999999999888877775
Q ss_pred ---HHHhhhhhhh--hcc-hH--HHHHHHHHHHHhhh
Q 009484 460 ---LSERERLTQM--QWD-ME--ELRQKSLEMEWKLK 488 (533)
Q Consensus 460 ---l~erer~tq~--qwd-me--elr~~~~e~e~~lk 488 (533)
++-|.|||.. |== || ....+++|+++-++
T Consensus 387 diPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 387 DIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5679999963 321 11 23345566655554
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.90 E-value=4.6e+02 Score=24.18 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccccc
Q 009484 417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCCR 494 (533)
Q Consensus 417 edliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~~ 494 (533)
-|||.+--..+..++=|.++++.|+.+++........-=.+.--.||| +...+=+.-.+..++...+.++|.+.++-
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere-~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE-LASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777888888888888888887776544333222222222333 22444455556666666677777766653
No 153
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.71 E-value=5e+02 Score=24.42 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHH---hhhhcccchhhhHHhhhhhHHHHHHHHHHHhh------hhhh
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDY---LMTKVKDLEVELETTKQKSKETLQQAILSERE------RLTQ 468 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~---l~tkvkdlevelett~~~~ke~lqqavl~ere------r~tq 468 (533)
|+.=+..+...|..+.+.+.++-..|.+---...= |+.||.-||-|||....+-++..++.=-++-. ++-+
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~ 119 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred hhcchHHHHHHHHHHHHhhh
Q 009484 469 MQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 469 ~qwdmeelr~~~~e~e~~lk 488 (533)
+.=..+++=+|+-+|+.+++
T Consensus 120 le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 120 LEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHH
No 154
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.65 E-value=85 Score=28.64 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=25.9
Q ss_pred hcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhh
Q 009484 412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS 451 (533)
Q Consensus 412 aktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ 451 (533)
.|+|.++++..|+-. .+|+..+++.||...+..+.+.
T Consensus 65 v~qd~~e~~~~l~~r---~E~ie~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 65 VKVDKTKVEKELKER---KELLELRSRTLEKQEKKLREKL 101 (121)
T ss_pred hhccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888887766 3677788888877666555443
No 155
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.30 E-value=2.9e+02 Score=28.59 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhh---cccHHHHHHHhhhhHH
Q 009484 401 VLLTMERRLVTA---KTDMEDLITRLNQEMT 428 (533)
Q Consensus 401 vl~t~~~rl~ta---ktdmedliarlnqe~a 428 (533)
-+.+.+.++++. +-|++..+.+++.|+.
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~ 69 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQ 69 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554443 3466666788777763
No 156
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=26.25 E-value=53 Score=28.56 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=33.0
Q ss_pred HHHHHhhcccHHHHHHHhhhh--HHHHHHhhhhcccchhhhHHhhh
Q 009484 406 ERRLVTAKTDMEDLITRLNQE--MTVKDYLMTKVKDLEVELETTKQ 449 (533)
Q Consensus 406 ~~rl~taktdmedliarlnqe--~avk~~l~tkvkdlevelett~~ 449 (533)
...|..-+.|.|+|=+=|.+- --||++|+...+.||.||...++
T Consensus 2 ~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 2 SEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888776655542 35999999999999999988765
No 157
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.24 E-value=1.7e+02 Score=34.48 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=35.9
Q ss_pred HHHHHHHhhcccHHHHHHH---hhhhHHHHHHhhhhcccchhhhHHhhhh--h-HHHHHHHHHH
Q 009484 404 TMERRLVTAKTDMEDLITR---LNQEMTVKDYLMTKVKDLEVELETTKQK--S-KETLQQAILS 461 (533)
Q Consensus 404 t~~~rl~taktdmedliar---lnqe~avk~~l~tkvkdlevelett~~~--~-ke~lqqavl~ 461 (533)
+.|.||..-.-|-|-|+-. |-..|-. =-.|++|||+=||.-++| . .|-|||-.+.
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVea---QgEKIrDLE~cie~kr~kLnatEEmLQqells 168 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEA---QGEKIRDLETCIEEKRNKLNATEEMLQQELLS 168 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhchHHHHHHHHHHh
Confidence 5778887777788888643 2222222 236999999999988776 3 4556665543
No 158
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.19 E-value=71 Score=31.48 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=27.0
Q ss_pred hHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhccc
Q 009484 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKD 439 (533)
Q Consensus 397 kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkd 439 (533)
-|.-+..-+.+....++.|||+=|++|+.|++.=+=+.++-|+
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~ 148 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKT 148 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666778888888888888888775555444443
No 159
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.62 E-value=1.5e+02 Score=32.40 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=19.6
Q ss_pred cccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhh
Q 009484 413 KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK 450 (533)
Q Consensus 413 ktdmedliarlnqe~avk~~l~tkvkdlevelett~~~ 450 (533)
....++.|+.+.+...-.+.+..++..|+.++...+..
T Consensus 315 l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 315 LEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445544444444555566666666555554444
No 160
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=25.44 E-value=69 Score=29.98 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=28.0
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHH-------HHHhhhhHH
Q 009484 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDL-------ITRLNQEMT 428 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl~taktdmedl-------iarlnqe~a 428 (533)
|+|=-..++||. .+-|||.+-..|.||| +.||||--|
T Consensus 82 IFLiiQTgnkMd----dvSrRL~aEgKdIdeLKKiN~mIvkrLNQld~ 125 (128)
T PF15145_consen 82 IFLIIQTGNKMD----DVSRRLTAEGKDIDELKKINSMIVKRLNQLDS 125 (128)
T ss_pred HHheeeccchHH----HHHHHHHhccCCHHHHHHHHHHHHHHHhhhcc
Confidence 445556677765 4579999999999998 578888544
No 161
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=24.88 E-value=3.3e+02 Score=32.19 Aligned_cols=23 Identities=17% Similarity=0.331 Sum_probs=9.9
Q ss_pred hhhhhhhhcchHHHHHHHHHHHH
Q 009484 463 RERLTQMQWDMEELRQKSLEMEW 485 (533)
Q Consensus 463 rer~tq~qwdmeelr~~~~e~e~ 485 (533)
++.+.+++-.+.+++.+..+++.
T Consensus 475 ~~~l~~l~~~l~~l~~~~~~l~~ 497 (1164)
T TIGR02169 475 KEEYDRVEKELSKLQRELAEAEA 497 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 162
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.70 E-value=2.2e+02 Score=27.87 Aligned_cols=88 Identities=23% Similarity=0.446 Sum_probs=46.2
Q ss_pred HHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccc--cc
Q 009484 417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQC--CR 494 (533)
Q Consensus 417 edliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~--~~ 494 (533)
+.-+.+|+++++- +..++.+|+.+|+..+..-.+. .||+.. |+ .+++|+.++.+++.+|+.-.. ..
T Consensus 68 ~~~~~~l~~~~~~---~~~~i~~l~~~i~~~~~~r~~~------~eR~~~--l~-~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 68 QNKLEKLQKEIEE---LEKKIEELEEKIEEAKKGREES------EEREEL--LE-ELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccccc------HHHHHH--HH-HHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3444455555443 3455666777777765444444 333332 11 466777777777777763322 11
Q ss_pred hhhhh----------hhhhcCchhhhHhhhhh
Q 009484 495 METHM----------QSQWKNPLSRIKMCCRS 516 (533)
Q Consensus 495 ~~~~~----------~~~~~~~~~~~~~~~~~ 516 (533)
.-..| -..|-+-+..|+-+|+.
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11111 23677777777666655
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.03 E-value=1.3e+02 Score=33.98 Aligned_cols=68 Identities=29% Similarity=0.456 Sum_probs=49.4
Q ss_pred hhHhHHHHHHHHHHHhhcc------------cHHHHHHHhhhhHH----HHHHhhhhcccchhhhHHhhhhhHHHHHHHH
Q 009484 396 HKLSRVLLTMERRLVTAKT------------DMEDLITRLNQEMT----VKDYLMTKVKDLEVELETTKQKSKETLQQAI 459 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~takt------------dmedliarlnqe~a----vk~~l~tkvkdlevelett~~~~ke~lqqav 459 (533)
.+++..|..++|++....- +..|-|.+|.+++- ==+.++.++...+..+++...+..+.+.+|.
T Consensus 417 ~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~ 496 (560)
T PF06160_consen 417 QKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNAT 496 (560)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899998876542 33333433333332 1256777888889999999999999999999
Q ss_pred HHHh
Q 009484 460 LSER 463 (533)
Q Consensus 460 l~er 463 (533)
|+||
T Consensus 497 L~E~ 500 (560)
T PF06160_consen 497 LAEQ 500 (560)
T ss_pred HHHH
Confidence 9997
No 164
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.88 E-value=2.6e+02 Score=30.66 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhh
Q 009484 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM 469 (533)
Q Consensus 399 ~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~ 469 (533)
.|+..+|+++|...+.-++.|-.||.. .....++.....+|+...++-...+++-+-..+.|+.++
T Consensus 269 ~RL~~am~~~L~~~r~rL~~L~~RL~~-----~~P~~~L~~~~qrLd~L~~RL~~a~~~~L~~k~~rL~~L 334 (432)
T TIGR00237 269 VRLHRAFDTLLHQKKARLEQLVASLQR-----QHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRL 334 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777776641 122234444555666666665555555555555555443
No 165
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.67 E-value=1e+02 Score=34.15 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhc
Q 009484 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 431 ~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~ 490 (533)
+=|.|||.||+-=.|.+| |++.|.-|-.-.-.+..++=|+..+...+.+|+..++.+
T Consensus 216 d~Ll~kVdDLQD~VE~LR---kDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLR---KDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777776666 345555555555555566666666666666666666554
No 166
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=23.49 E-value=63 Score=27.60 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=37.5
Q ss_pred hhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHh
Q 009484 423 LNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWK 486 (533)
Q Consensus 423 lnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~ 486 (533)
=.+|-++|.=|.+..++++++++...+.-. .-++-||- ++|++|.+.+++|..
T Consensus 5 ~~~e~~~K~~lk~~L~~I~~~~~~i~~~ld-~~~~ClL~----------e~e~i~~~f~~~q~~ 57 (70)
T PF10372_consen 5 QLSESPLKEQLKQYLEQIEEEISQIIQTLD-EDDCCLLC----------EFEEIREKFLDIQTL 57 (70)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHTT--TT--GGG----------GHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCceech----------hHHHHHHHHHHHHHH
Confidence 357778888888888899998886665443 23455554 589999999999864
No 167
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.42 E-value=1.7e+02 Score=33.30 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=19.5
Q ss_pred hhhcchHHHHHHHHHHHHhhhhccccc
Q 009484 468 QMQWDMEELRQKSLEMEWKLKSKQCCR 494 (533)
Q Consensus 468 q~qwdmeelr~~~~e~e~~lks~~~~~ 494 (533)
++..++++++.+..+.+.+++....+.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 567778888888888887777655444
No 168
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.16 E-value=2e+02 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=8.4
Q ss_pred hhcchHHHHHHHHHHHHhh
Q 009484 469 MQWDMEELRQKSLEMEWKL 487 (533)
Q Consensus 469 ~qwdmeelr~~~~e~e~~l 487 (533)
++--++..+.++..+...|
T Consensus 211 ~~~~l~~~~~~L~~l~~~l 229 (319)
T PF02601_consen 211 IQQKLQRKRQRLQNLSNRL 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444333
No 169
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.04 E-value=3.1e+02 Score=28.73 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHH
Q 009484 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481 (533)
Q Consensus 402 l~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~ 481 (533)
|..++.+|...+.+++.+=+.|.+ |..++..|+.+++....+-.+-+.+.--+||.+-..=.|...|+.+-..
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~e-------l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAE-------LQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 334455555555554433222222 3334445555555555544444444444555555566777776655433
Q ss_pred H
Q 009484 482 E 482 (533)
Q Consensus 482 e 482 (533)
+
T Consensus 284 ~ 284 (325)
T PF08317_consen 284 K 284 (325)
T ss_pred H
Confidence 3
No 170
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.81 E-value=1.4e+02 Score=31.24 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=41.3
Q ss_pred HHHHHHHhhhhHH--HHHHhhhhcccchhhhHHhhhhhHHHHHH--HHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhc
Q 009484 416 MEDLITRLNQEMT--VKDYLMTKVKDLEVELETTKQKSKETLQQ--AILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 416 medliarlnqe~a--vk~~l~tkvkdlevelett~~~~ke~lqq--avl~erer~tq~qwdmeelr~~~~e~e~~lks~ 490 (533)
+|..|.++|...+ ..+||...|..++.+|+...++-++=-++ .|..|.+--.+.+ -+.+|+.++.+.|.+|...
T Consensus 156 ~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~-~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 156 GERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLS-LISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4667777777665 55688888888888888776654442221 1111111111111 1556666666666666543
No 171
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.76 E-value=1.3e+02 Score=36.66 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=40.5
Q ss_pred hcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhh
Q 009484 412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 412 aktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lk 488 (533)
.||-|| |..-|+||+.+|||.|+|-+|.=..-.--||-+|--= -++|.|.|.++---.|+
T Consensus 223 skte~e---------------Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqle--qlqEfkSkim~qqa~Lq 282 (1243)
T KOG0971|consen 223 SKTEEE---------------LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLE--QLQEFKSKIMEQQADLQ 282 (1243)
T ss_pred ccchHH---------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 688888 4555999999999999999887554444444443221 25678888776444443
No 172
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.59 E-value=2.9e+02 Score=27.05 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=40.1
Q ss_pred cccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhh
Q 009484 413 KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 413 ktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lk 488 (533)
|.+|++-|+.|.. -++-|..++.+|+..+|.+.++..+.++...-. .+=.++-|+++-..+..+|+
T Consensus 122 ~~~l~~~i~~L~~---e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~-------~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEE---EKEELEKQVQELKNKCEQLEKREEELRQEEEKK-------HQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 4555555555554 456788888888888888887776655432211 12234556666666655554
No 173
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.35 E-value=1.6e+02 Score=28.15 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=29.1
Q ss_pred hhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHH
Q 009484 411 TAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQ 456 (533)
Q Consensus 411 taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lq 456 (533)
+...|+||+|.++++++. -+...+++++.+++..+.+.+..+|
T Consensus 39 ~~~~~lE~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQID---ELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344589999999888874 3455666677776666666555444
No 174
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=22.05 E-value=74 Score=38.24 Aligned_cols=91 Identities=20% Similarity=0.134 Sum_probs=59.2
Q ss_pred EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCC---CCC------CcccCCCCHHHHHHHHHHHHHH
Q 009484 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPP---APP------KGLLRMKSRALLEERRCSLEEW 138 (533)
Q Consensus 68 VvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPp---LPp------K~lfr~~s~eFLEERR~~LE~Y 138 (533)
..|+|.+ ... .-.|.|++=|..|..||..|...-....+|. ++- |.-....++...-+|+..+|.|
T Consensus 67 ~~y~v~L--~hG---~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Y 141 (887)
T KOG1329|consen 67 GSYTVEL--LHG---TLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENY 141 (887)
T ss_pred cceeeee--ecC---cEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccch
Confidence 5788888 333 3589999999999999998865322111111 000 1111111111114455569999
Q ss_pred HHHHhcccccCCCHHHHhccCcchh
Q 009484 139 MTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 139 LqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
|..++..+.+.+.-.+.+||+..-.
T Consensus 142 lt~~l~~~~~~~t~~~~~f~e~s~~ 166 (887)
T KOG1329|consen 142 LTVVLHKARYRRTHVIYEFLENSRW 166 (887)
T ss_pred heeeechhhhhchhhhhcccccchh
Confidence 9999999999999999999877643
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.94 E-value=5.4e+02 Score=25.42 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.9
Q ss_pred HHHhhhhcccch
Q 009484 430 KDYLMTKVKDLE 441 (533)
Q Consensus 430 k~~l~tkvkdle 441 (533)
|+.|.++..+|+
T Consensus 97 ~~~l~~~~~~l~ 108 (302)
T PF10186_consen 97 RESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 176
>PRK10780 periplasmic chaperone; Provisional
Probab=21.85 E-value=2.1e+02 Score=27.07 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=40.1
Q ss_pred ccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhH----------HHHHHHHHHHhhh-hhhhhcchHHHHHHHHH
Q 009484 414 TDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK----------ETLQQAILSERER-LTQMQWDMEELRQKSLE 482 (533)
Q Consensus 414 tdmedliarlnqe~avk~~l~tkvkdlevelett~~~~k----------e~lqqavl~erer-~tq~qwdmeelr~~~~e 482 (533)
.||+.++.-..+--.+..=|.++.+..+.||+.....-+ ..|-++--.+|++ +.++| .+++++...
T Consensus 29 Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~---~~~q~~~~~ 105 (165)
T PRK10780 29 VNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQR---QTFSQKAQA 105 (165)
T ss_pred eeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 466666666666656665566665555555554433322 1122222222222 33333 466666666
Q ss_pred HHHhhhhccccch
Q 009484 483 MEWKLKSKQCCRM 495 (533)
Q Consensus 483 ~e~~lks~~~~~~ 495 (533)
++..++.++++-+
T Consensus 106 ~qq~~~~~~~e~~ 118 (165)
T PRK10780 106 FEQDRRRRSNEER 118 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555543
No 177
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.53 E-value=2.1e+02 Score=30.62 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=42.8
Q ss_pred HhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhh
Q 009484 432 YLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 432 ~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks 489 (533)
-|.+.|-||+..+-..-. -.|.|+|.+-+.++.=.+++=++-||+.|+.|+..-|..
T Consensus 238 ~LlsqivdlQ~r~k~~~~-EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAA-ENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777655433322 257889999999999999999999999999997665543
No 178
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=21.25 E-value=7.4e+02 Score=27.82 Aligned_cols=136 Identities=20% Similarity=0.299 Sum_probs=77.7
Q ss_pred eccchhh-HhHHHHHHHHHH---HhhcccHHHHHHHhhhhHHH-------HHHhhhhcccchhhhHHhhhhhHHHHH--H
Q 009484 391 PLDQRHK-LSRVLLTMERRL---VTAKTDMEDLITRLNQEMTV-------KDYLMTKVKDLEVELETTKQKSKETLQ--Q 457 (533)
Q Consensus 391 p~d~r~k-l~rvl~t~~~rl---~taktdmedliarlnqe~av-------k~~l~tkvkdlevelett~~~~ke~lq--q 457 (533)
|.++.++ |+-|+.-++.=. .----++|+|-.++-.|+-. --|=+++..+-=-+|-...|+---||. +
T Consensus 254 ~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqEl 333 (455)
T KOG3850|consen 254 PYHSQGAALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQEL 333 (455)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344445 555554443322 22234555555544433311 123334433222333344555555664 6
Q ss_pred HHHHHh------hhhhhhhcchHHHHHHHHHHHHhhhhccccchhhhhhhhhcCch------------------hhhHhh
Q 009484 458 AILSER------ERLTQMQWDMEELRQKSLEMEWKLKSKQCCRMETHMQSQWKNPL------------------SRIKMC 513 (533)
Q Consensus 458 avl~er------er~tq~qwdmeelr~~~~e~e~~lks~~~~~~~~~~~~~~~~~~------------------~~~~~~ 513 (533)
|-+.|| ||+-.+|=-||-|-.....||+.++--|-.-.|.--.+.|++-| |.|--|
T Consensus 334 asmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~VlLvfVSTIa~~ 413 (455)
T KOG3850|consen 334 ASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLEGLENAVARRLLGKFINIILALMTVLLVFVSTIANC 413 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889998 89999999999999999999998875554444433335676543 344445
Q ss_pred hhhhhhhcccccccc
Q 009484 514 CRSWMLLKSNLRICQ 528 (533)
Q Consensus 514 ~~~~~~~~~~~~~~~ 528 (533)
-+. |.||-+|+|-
T Consensus 414 v~P--LmkSR~rt~~ 426 (455)
T KOG3850|consen 414 VSP--LMKSRNRTAS 426 (455)
T ss_pred ccH--HhhhhhHHHH
Confidence 554 4477777774
No 179
>PF14980 TIP39: TIP39 peptide
Probab=21.24 E-value=81 Score=25.48 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=16.9
Q ss_pred CHHHHH--------HHHHHHHHHHHHHhc
Q 009484 124 SRALLE--------ERRCSLEEWMTKLLS 144 (533)
Q Consensus 124 s~eFLE--------ERR~~LE~YLqkLLs 144 (533)
+.+|-| |||+-|+.|||+|+-
T Consensus 20 DaAFrerarLl~amER~~WLnSYMqkLLv 48 (51)
T PF14980_consen 20 DAAFRERARLLTAMERQKWLNSYMQKLLV 48 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466665 589999999999974
No 180
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.17 E-value=1.6e+02 Score=29.60 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=25.8
Q ss_pred HhhhhhHHHHHHHHHHHh--hhhhhhhcchHHHHHHHHHHHHh
Q 009484 446 TTKQKSKETLQQAILSER--ERLTQMQWDMEELRQKSLEMEWK 486 (533)
Q Consensus 446 tt~~~~ke~lqqavl~er--er~tq~qwdmeelr~~~~e~e~~ 486 (533)
+.|++.+.-|.+=-+.|. +++...+|.||++.-....+..+
T Consensus 58 ~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~ 100 (211)
T PTZ00464 58 RHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDT 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554 56777888888888776655544
No 181
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=1.6e+02 Score=35.85 Aligned_cols=67 Identities=24% Similarity=0.410 Sum_probs=39.8
Q ss_pred cCCceEEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhh-------hhHHHHHHhhhhcccchhhhHHhhh
Q 009484 383 SGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLN-------QEMTVKDYLMTKVKDLEVELETTKQ 449 (533)
Q Consensus 383 ~~d~~~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarln-------qe~avk~~l~tkvkdlevelett~~ 449 (533)
+.+++|.+|++----...=|--++.||...++-.+-|.+|++ +-.-||+---.|++++|+|+|.+++
T Consensus 913 ~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~~~~~~Kl~~~~~ei~~~~~ 986 (995)
T KOG0432|consen 913 SSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKAPLEVKEKNKEKLKELEAEIENLKA 986 (995)
T ss_pred CCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666543221222222234555666666677777764 3345677777888899998887765
No 182
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=20.82 E-value=1.4e+02 Score=28.72 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=47.0
Q ss_pred cchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHH
Q 009484 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET 454 (533)
Q Consensus 393 d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~ 454 (533)
-|..+|.+=|.|++.-+-+--..|++=|.-|+.-. .-+..||+.||.++|.-+|.-|+.
T Consensus 55 sQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G---~sl~~kVtSLea~lEkqqQeLkAd 113 (138)
T PF03954_consen 55 SQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQG---GSLQDKVTSLEAKLEKQQQELKAD 113 (138)
T ss_pred CccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---ccHHhHcccHHHHHHHHHHHHhhh
Confidence 46789999999999999866556666688887643 349999999999999988876654
No 183
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=5.1e+02 Score=30.82 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=69.4
Q ss_pred Eeeccchh----hHhHHHHHHHHHHH---------hhcccHHHHHHHhhhhHHHHHHhhhhcccc---hhhhHHhhhhhH
Q 009484 389 VIPLDQRH----KLSRVLLTMERRLV---------TAKTDMEDLITRLNQEMTVKDYLMTKVKDL---EVELETTKQKSK 452 (533)
Q Consensus 389 ~lp~d~r~----kl~rvl~t~~~rl~---------taktdmedliarlnqe~avk~~l~tkvkdl---evelett~~~~k 452 (533)
-+|.+++. |.++.+..+-+|+. +-|++++|.-.|.-|..+.++.|..|++-. .+|++++.+---
T Consensus 385 ~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~e 464 (698)
T KOG0978|consen 385 SLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFE 464 (698)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888 66666655555543 235788999999999999999999999765 588888876432
Q ss_pred HHHH-----------------HHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhh
Q 009484 453 ETLQ-----------------QAILSERERLTQMQWDMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 453 e~lq-----------------qavl~erer~tq~qwdmeelr~~~~e~e~~lks 489 (533)
+ || =+.+.||.+.+|+. ..||.+...|++.++.
T Consensus 465 d-~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~---k~L~~ek~~l~~~i~~ 514 (698)
T KOG0978|consen 465 D-MQEQNQKLLQELREKDDKNFKLMSERIKANQKH---KLLREEKSKLEEQILT 514 (698)
T ss_pred H-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 2 22 15678888999986 5677777777765543
No 184
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.60 E-value=1.3e+02 Score=31.49 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=21.1
Q ss_pred hcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHH
Q 009484 436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (533)
Q Consensus 436 kvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e 482 (533)
.|+.|+.+++..++.-++..++.+-.....+.+.+++.++|.+...-
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~ 289 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNEL 289 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 34455555554444433333332222222234556666666655444
No 185
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=20.58 E-value=2.1e+02 Score=27.77 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=38.4
Q ss_pred EEeeccchhhHhHHHHHHHHHH-HhhcccHHHHHHHhhh----hHHHHHHhhhhcccchhhhHHhhhhhH
Q 009484 388 LVIPLDQRHKLSRVLLTMERRL-VTAKTDMEDLITRLNQ----EMTVKDYLMTKVKDLEVELETTKQKSK 452 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl-~taktdmedliarlnq----e~avk~~l~tkvkdlevelett~~~~k 452 (533)
+-|+.+||++|..++..-+.-. .....+++.+.+-|.. |.||+. +..|.-...+|+--...+-+
T Consensus 55 l~LTd~QR~qmr~im~~~r~~~~~~~~~~~~~m~~Li~Ad~FDeaAvra-~~~kma~~~~e~~v~~~~~~ 123 (162)
T PRK12751 55 INLTEQQRQQMRDLMRQSHQSQPRLDLEDREAMHKLITADKFDEAAVRA-QAEKMSQNQIERHVEMAKVR 123 (162)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999987643310 0122366666665554 567776 45555555555544444433
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.49 E-value=6.9e+02 Score=23.18 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=40.2
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHH-------HHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhh
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLI-------TRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQ 468 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedli-------arlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq 468 (533)
.-+.-=|.+|++=|.-.||.-+.|| +.+|+=-|=+.=++..|.+|+.++...++.-- -..+|=+.=+-|.+.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le-~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE-DEKQAKLELESRLLK 90 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344456788888888888877764 34444444444455555666665555543322 234444333334444
Q ss_pred hhcc
Q 009484 469 MQWD 472 (533)
Q Consensus 469 ~qwd 472 (533)
+|=|
T Consensus 91 ~~~d 94 (107)
T PF09304_consen 91 AQKD 94 (107)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4433
No 187
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.45 E-value=58 Score=39.82 Aligned_cols=19 Identities=47% Similarity=0.630 Sum_probs=17.1
Q ss_pred HHHhhhhHHHHHHhhhhcc
Q 009484 420 ITRLNQEMTVKDYLMTKVK 438 (533)
Q Consensus 420 iarlnqe~avk~~l~tkvk 438 (533)
+.||-||||||+-||+|-+
T Consensus 1315 LdRLRQeVavke~lt~k~r 1333 (1714)
T KOG0241|consen 1315 LDRLRQEVAVKEALTTKGR 1333 (1714)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3699999999999999976
No 188
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=20.44 E-value=4.2e+02 Score=25.43 Aligned_cols=92 Identities=30% Similarity=0.376 Sum_probs=45.4
Q ss_pred cHHHHHHHhhhhHHHH--------------HHhhhhcccch---hhhHHhhhhhHHHHH--HHHHHHhhhhhhhhcch-H
Q 009484 415 DMEDLITRLNQEMTVK--------------DYLMTKVKDLE---VELETTKQKSKETLQ--QAILSERERLTQMQWDM-E 474 (533)
Q Consensus 415 dmedliarlnqe~avk--------------~~l~tkvkdle---velett~~~~ke~lq--qavl~erer~tq~qwdm-e 474 (533)
-+||||.|+|+=-.+| +-|-.-..-|- |-||.+=.|-+|.|+ |----|+|.-.|.|=.+ .
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~ 86 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQ 86 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3689999998654444 33333333332 225555566666655 11225666666655443 2
Q ss_pred HHHHHHHHHHHhhhhc---cccchhhhhhhhhcCch
Q 009484 475 ELRQKSLEMEWKLKSK---QCCRMETHMQSQWKNPL 507 (533)
Q Consensus 475 elr~~~~e~e~~lks~---~~~~~~~~~~~~~~~~~ 507 (533)
+|. .-+++|..|.-. .-+-.|-||..++.-.+
T Consensus 87 eck-~R~~fe~qLE~lm~qHKdLwefh~~erLa~EI 121 (134)
T PF15233_consen 87 ECK-LRLDFEEQLEDLMGQHKDLWEFHMPERLAREI 121 (134)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 222 234444444322 23335556655544443
No 189
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.37 E-value=4.4e+02 Score=33.81 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=9.1
Q ss_pred cCchhhhHhhhh
Q 009484 504 KNPLSRIKMCCR 515 (533)
Q Consensus 504 ~~~~~~~~~~~~ 515 (533)
..-+.++++||-
T Consensus 420 i~~Le~~~~~~~ 431 (1486)
T PRK04863 420 VQALERAKQLCG 431 (1486)
T ss_pred HHHHHHHHHHhC
Confidence 356778899996
No 190
>PLN02939 transferase, transferring glycosyl groups
Probab=20.16 E-value=1.9e+02 Score=35.43 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=56.6
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhh
Q 009484 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT 467 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~t 467 (533)
|+.=-.+|.-|.--|..|.-||..|.+||-.|-.+ -.|. |-.||..|+.=|+++... -+||++. +.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~----~~ 324 (977)
T PLN02939 259 VFKLEKERSLLDASLRELESKFIVAQEDVSKLSPL-QYDC-----WWEKVENLQDLLDRATNQ----VEKAALV----LD 324 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccch-hHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHH----hc
Confidence 44445677788888888889999999999887653 3332 788888888888866543 3455554 22
Q ss_pred hhhcchHHHHHHHHHHHHhhhh
Q 009484 468 QMQWDMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 468 q~qwdmeelr~~~~e~e~~lks 489 (533)
|- .+||+|.-++|..|+.
T Consensus 325 ~~----~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 325 QN----QDLRDKVDKLEASLKE 342 (977)
T ss_pred cc----hHHHHHHHHHHHHHHH
Confidence 22 3677777666666553
Done!