Query 009484
Match_columns 533
No_of_seqs 161 out of 1089
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq2_A Sorting nexin-7; SNX7, 99.9 1.1E-24 3.9E-29 195.2 11.2 119 48-168 9-131 (138)
2 3lui_A Sorting nexin-17, SNX17 99.9 5.4E-25 1.8E-29 191.1 8.2 108 47-163 3-110 (115)
3 2csk_A Sorting nexin 12; SNX12 99.9 1.3E-23 4.5E-28 188.5 9.8 114 48-164 11-133 (146)
4 2i4k_A Sorting nexin-1, SNX1; 99.9 3.5E-24 1.2E-28 186.0 4.6 112 48-161 4-127 (128)
5 1ocs_A Sorting nexin GRD19; so 99.9 4.7E-23 1.6E-27 189.1 11.1 115 48-162 36-159 (162)
6 3p0c_A Nischarin; structural g 99.9 2.2E-23 7.6E-28 185.1 6.9 110 48-163 16-126 (130)
7 1xte_A Serine/threonine-protei 99.9 9.3E-23 3.2E-27 185.3 9.7 109 48-164 8-117 (154)
8 2v14_A Kinesin-like motor prot 99.9 2.5E-22 8.5E-27 179.0 10.5 109 48-163 6-117 (134)
9 1kmd_A VAM7P, vacuolar morphog 99.9 2E-22 6.8E-27 174.9 8.0 99 48-162 6-115 (117)
10 4az9_A Sorting nexin-24; prote 99.9 1.5E-21 5.1E-26 173.8 12.1 106 47-163 22-127 (129)
11 1h6h_A Neutrophil cytosol fact 99.9 1.4E-21 4.8E-26 174.3 11.5 111 45-163 18-137 (143)
12 2ar5_A Phosphoinositide 3-kina 99.8 1.2E-20 4.1E-25 165.3 11.6 112 45-162 3-116 (121)
13 2ett_A Sorting nexin-22; PX do 99.8 8.1E-21 2.8E-25 168.9 8.8 92 63-164 28-119 (128)
14 4akv_A Sorting nexin-33; trans 99.8 1.8E-21 6.2E-26 199.9 5.3 108 48-162 42-149 (386)
15 3dyt_A Sorting nexin-9; 3-heli 99.8 3.3E-21 1.1E-25 195.9 5.6 108 48-162 21-129 (366)
16 1kq6_A NCF-1, P47PHOX, neutrop 99.8 1.1E-19 3.7E-24 162.5 13.0 110 45-163 4-123 (141)
17 3hpc_X SNX5 protein; sprting n 99.8 4.1E-20 1.4E-24 171.1 10.3 115 43-163 7-152 (161)
18 2iwl_X Phosphatidylinositol-4- 99.8 2.9E-20 9.8E-25 166.3 7.6 112 44-161 17-130 (140)
19 2v6v_A BUD emergence protein 1 99.8 2.5E-18 8.6E-23 157.9 12.2 105 46-162 17-136 (156)
20 2l73_A NADPH oxidase organizer 99.7 1E-17 3.4E-22 152.9 10.2 96 63-162 22-128 (149)
21 2wwe_A Phosphoinositide-3-kina 99.7 5.2E-17 1.8E-21 146.2 7.8 106 42-160 20-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.6 3.8E-15 1.3E-19 149.7 11.3 110 45-162 21-139 (341)
23 3oja_B Anopheles plasmodium-re 79.8 4.3 0.00015 42.4 8.1 44 453-496 547-590 (597)
24 1nfn_A Apolipoprotein E3; lipi 74.0 7.8 0.00027 36.4 7.3 96 396-494 24-129 (191)
25 2xv5_A Lamin-A/C; structural p 67.3 5.1 0.00017 33.0 3.9 48 394-448 6-53 (74)
26 2dfs_A Myosin-5A; myosin-V, in 63.9 9 0.00031 44.6 6.5 17 433-449 1021-1037(1080)
27 2ocy_A RAB guanine nucleotide 61.4 32 0.0011 31.9 8.5 89 404-492 48-136 (154)
28 1nfn_A Apolipoprotein E3; lipi 58.8 16 0.00053 34.4 6.1 26 395-423 90-115 (191)
29 3s84_A Apolipoprotein A-IV; fo 58.7 9.1 0.00031 37.9 4.7 90 394-490 16-107 (273)
30 1c1g_A Tropomyosin; contractIl 55.6 51 0.0018 29.2 8.7 26 398-423 4-29 (284)
31 3oja_B Anopheles plasmodium-re 54.0 20 0.00067 37.5 6.5 16 473-488 546-561 (597)
32 1i84_S Smooth muscle myosin he 53.2 2.8 9.6E-05 48.7 0.0 86 403-489 1007-1092(1184)
33 2eqb_B RAB guanine nucleotide 52.7 84 0.0029 27.2 9.1 67 396-462 8-74 (97)
34 2e7s_A RAB guanine nucleotide 51.8 20 0.0007 32.7 5.4 91 401-491 33-123 (135)
35 2dfs_A Myosin-5A; myosin-V, in 48.9 16 0.00054 42.6 5.2 57 433-489 982-1048(1080)
36 1t3j_A Mitofusin 1; coiled coi 47.3 17 0.00058 31.5 3.9 45 396-440 32-76 (96)
37 3lay_A Zinc resistance-associa 46.8 12 0.0004 35.2 3.1 62 388-449 66-127 (175)
38 1x8y_A Lamin A/C; structural p 46.1 18 0.00063 30.0 3.9 46 434-484 34-82 (86)
39 3mq7_A Bone marrow stromal ant 44.8 67 0.0023 28.8 7.4 60 410-487 49-108 (121)
40 3u1c_A Tropomyosin alpha-1 cha 44.6 1.2E+02 0.0042 25.6 8.9 52 432-484 48-99 (101)
41 1c1g_A Tropomyosin; contractIl 43.8 1.1E+02 0.0037 27.1 8.9 18 405-422 88-105 (284)
42 1m1j_B Fibrinogen beta chain; 43.3 77 0.0026 34.0 9.0 106 383-490 74-194 (464)
43 1gk4_A Vimentin; intermediate 40.8 25 0.00086 28.9 3.9 45 434-483 32-79 (84)
44 3ra3_B P2F; coiled coil domain 40.6 13 0.00043 25.4 1.6 14 420-433 9-22 (28)
45 3kin_B Kinesin heavy chain; mo 39.6 16 0.00053 32.0 2.6 36 413-448 81-116 (117)
46 1gk6_A Vimentin; intermediate 39.3 30 0.001 26.9 3.8 44 398-448 5-48 (59)
47 3cve_A Homer protein homolog 1 39.1 50 0.0017 27.2 5.3 46 433-482 19-67 (72)
48 1ic2_A Tropomyosin alpha chain 39.0 82 0.0028 25.5 6.7 54 404-457 17-70 (81)
49 2l7b_A Apolipoprotein E, APO-E 37.7 76 0.0026 32.0 7.6 27 397-423 33-59 (307)
50 1k1f_A Breakpoint cluster regi 37.0 21 0.00072 29.3 2.7 34 436-470 27-60 (72)
51 1gs9_A Apolipoprotein E, APOE4 36.1 67 0.0023 29.6 6.3 30 467-496 124-153 (165)
52 1gs9_A Apolipoprotein E, APOE4 35.1 99 0.0034 28.4 7.3 70 395-481 90-160 (165)
53 3s84_A Apolipoprotein A-IV; fo 34.9 3.4E+02 0.012 26.7 11.7 58 428-488 136-193 (273)
54 2l7b_A Apolipoprotein E, APO-E 34.8 53 0.0018 33.1 5.9 28 467-494 132-159 (307)
55 1m1j_C Fibrinogen gamma chain; 33.9 1.1E+02 0.0038 32.1 8.3 90 398-487 25-128 (409)
56 3cvf_A Homer-3, homer protein 33.6 42 0.0014 28.1 4.1 16 433-448 25-40 (79)
57 2a01_A Apolipoprotein A-I; fou 32.5 58 0.002 31.3 5.5 92 395-489 116-216 (243)
58 1m1j_B Fibrinogen beta chain; 32.1 1.4E+02 0.0049 31.9 8.9 89 393-481 93-199 (464)
59 3u59_A Tropomyosin beta chain; 31.9 2.2E+02 0.0077 23.8 8.5 51 433-484 49-99 (101)
60 3na7_A HP0958; flagellar bioge 31.7 76 0.0026 30.5 6.2 96 395-491 34-145 (256)
61 2k53_A A3DK08 protein; NESG, C 31.5 35 0.0012 27.6 3.3 30 405-434 41-70 (76)
62 3hyb_A RBCX protein; rubisco, 31.4 60 0.0021 30.3 5.1 38 428-466 60-97 (155)
63 2fxo_A Myosin heavy chain, car 31.4 1.9E+02 0.0065 25.2 8.2 64 414-488 65-128 (129)
64 2a01_A Apolipoprotein A-I; fou 30.9 1.5E+02 0.0053 28.3 8.2 78 393-473 48-126 (243)
65 3oja_A Leucine-rich immune mol 30.6 1.8E+02 0.0062 29.7 9.2 70 412-484 368-448 (487)
66 1deq_A Fibrinogen (alpha chain 29.6 44 0.0015 35.2 4.3 59 398-456 111-169 (390)
67 3ghg_A Fibrinogen alpha chain; 28.0 1.2E+02 0.004 33.4 7.4 43 443-489 114-156 (562)
68 3mtu_A Tropomyosin alpha-1 cha 27.9 90 0.0031 25.4 5.1 49 401-449 3-51 (75)
69 3ni0_A Bone marrow stromal ant 27.3 1.2E+02 0.0042 26.3 6.0 45 411-455 43-87 (99)
70 3m0a_A TNF receptor-associated 26.6 96 0.0033 24.0 4.9 47 413-470 14-60 (66)
71 3iv1_A Tumor susceptibility ge 26.5 61 0.0021 27.1 3.9 18 410-427 38-55 (78)
72 3u59_A Tropomyosin beta chain; 26.5 2.8E+02 0.0097 23.1 8.6 87 402-489 4-90 (101)
73 3q0x_A Centriole protein; cent 26.0 61 0.0021 31.7 4.4 50 427-484 163-212 (228)
74 3swf_A CGMP-gated cation chann 25.7 67 0.0023 26.7 3.9 49 415-477 4-52 (74)
75 3ka1_A RBCX protein; chaperone 23.2 1.3E+02 0.0044 27.2 5.6 51 414-470 51-113 (126)
76 2c5k_T Syntaxin TLG1, T-snare 22.9 1.8E+02 0.006 24.6 6.2 21 462-488 72-92 (95)
77 2ln3_A De novo designed protei 22.2 26 0.00089 28.8 0.8 54 426-510 17-70 (83)
78 3he5_A Synzip1; heterodimeric 22.1 1.6E+02 0.0054 22.2 5.0 24 418-451 3-26 (49)
79 1deq_A Fibrinogen (alpha chain 21.8 2.1E+02 0.0071 30.2 7.6 41 439-487 117-157 (390)
80 3ghg_A Fibrinogen alpha chain; 21.6 76 0.0026 34.8 4.5 47 433-480 115-161 (562)
81 3mq7_A Bone marrow stromal ant 21.6 75 0.0026 28.5 3.7 46 398-453 51-103 (121)
82 3ghg_B Fibrinogen beta chain; 20.8 2.1E+02 0.0071 30.8 7.5 108 384-493 70-192 (461)
No 1
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=195.16 Aligned_cols=119 Identities=24% Similarity=0.303 Sum_probs=99.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CC
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MK 123 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr----~~ 123 (533)
+.|.|.....+.+ +.++||+|.|.|.+..+.+....|.|.||||||.+||+.|++.||...+|+||+|.+++ .+
T Consensus 9 l~i~V~dp~~~~~--g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ 86 (138)
T 3iq2_A 9 LFITVDEPESHVT--TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERF 86 (138)
T ss_dssp CEEEEEEEEEEEC--SSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGG
T ss_pred EEEEECCCEEecC--CCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccC
Confidence 4566666655443 56789999999987766666789999999999999999999999999999999998764 35
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchhhhhhh
Q 009484 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSF 168 (533)
Q Consensus 124 s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~aaRs~f 168 (533)
+++|||+||++||.||++|+.+|.|++|+.|+.||+.+...++..
T Consensus 87 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~~~~~~ 131 (138)
T 3iq2_A 87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSH 131 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCBC----
T ss_pred CHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCCCcccc
Confidence 899999999999999999999999999999999999998877754
No 2
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.91 E-value=5.4e-25 Score=191.07 Aligned_cols=108 Identities=26% Similarity=0.372 Sum_probs=93.8
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 009484 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (533)
Q Consensus 47 Sy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~e 126 (533)
.+.|+||++..+.+..|.++||+|.|.|. ..|.|.||||||.+||+.|++.||...+|+||+|.+++ ++++
T Consensus 3 ~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~ 73 (115)
T 3lui_A 3 AMHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPA 73 (115)
T ss_dssp --CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHH
T ss_pred cEEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHH
Confidence 35799999998765556789999999982 48999999999999999999999988899999998885 6799
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
|||+||++||.||+.|+.||.+++|+.|+.||+.+..
T Consensus 74 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 74 EVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHH
Confidence 9999999999999999999999999999999987753
No 3
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=188.55 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=97.1
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL------- 120 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lf------- 120 (533)
+.|.|.....+.+ +.++||+|.|+|.+..+......|.|.||||||.+||+.|++. |...+|+||+|.++
T Consensus 11 l~i~V~dp~~~~~--g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~ 87 (146)
T 2csk_A 11 LEIDIFNPQTVGV--GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG 87 (146)
T ss_dssp CEEEEEEEEEESS--SSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCC
T ss_pred EEEEEcCceEecC--CCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccccc
Confidence 4555666555433 5678999999997665555567999999999999999999876 77789999999876
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchhh
Q 009484 121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (533)
Q Consensus 121 --r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~aa 164 (533)
++++++|||+||++||.||+.|+.||.+++++.|+.||+.+...
T Consensus 88 ~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 133 (146)
T 2csk_A 88 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAID 133 (146)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchh
Confidence 46789999999999999999999999999999999999988653
No 4
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.89 E-value=3.5e-24 Score=185.96 Aligned_cols=112 Identities=29% Similarity=0.452 Sum_probs=96.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--CCCCCCCCCcccCC---
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--KNIPPAPPKGLLRM--- 122 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--~~LPpLPpK~lfr~--- 122 (533)
+.|.|+++..+.+ +.++|++|.|+|....+......|.|.||||||.+||+.|++.||. ..+|+||+|.+++.
T Consensus 4 l~v~V~~~~~~~~--g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~ 81 (128)
T 2i4k_A 4 LTVGITDPEKIGD--GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81 (128)
T ss_dssp CCCCBCCCCBCCC--SSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC
T ss_pred EEEEECCceEecC--CCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh
Confidence 4577888776543 4678999999997665555568999999999999999999999974 67899999987753
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcc
Q 009484 123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (533)
Q Consensus 123 -------~s~eFLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd 161 (533)
++++|||+||++||.||+.|+.||.+++|++|+.||+.+
T Consensus 82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 378999999999999999999999999999999999876
No 5
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.88 E-value=4.7e-23 Score=189.08 Aligned_cols=115 Identities=24% Similarity=0.277 Sum_probs=99.0
Q ss_pred EEEEeCCeEeccC-C-CCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-----CCCCCCCCCCCccc
Q 009484 48 YCVTIPSWVVLPK-S-RDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-----PKKNIPPAPPKGLL 120 (533)
Q Consensus 48 y~VsIPSw~~v~~-s-k~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~f-----p~~~LPpLPpK~lf 120 (533)
+.|.|.....+.. . .+.++||+|.|+|.+..+.+....|.|.||||||.+||+.|++.| |...+|+||+|.++
T Consensus 36 l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~ 115 (162)
T 1ocs_A 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL 115 (162)
T ss_dssp EEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCS
T ss_pred EEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCccc
Confidence 6666666654411 1 356789999999987766666789999999999999999999999 88899999999886
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccccCC-CHHHHhccCcch
Q 009484 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLELEA 162 (533)
Q Consensus 121 -r~~s~eFLEERR~~LE~YLqkLLs~P~Ls~-S~~V~eFLELd~ 162 (533)
++++++|||+||++||.||+.|+.||.|++ |+.|+.||+.+.
T Consensus 116 ~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 116 SNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence 467899999999999999999999999998 999999998764
No 6
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.88 E-value=2.2e-23 Score=185.10 Aligned_cols=110 Identities=25% Similarity=0.266 Sum_probs=93.5
Q ss_pred EEEEeCCeEeccC-CCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 009484 48 YCVTIPSWVVLPK-SRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (533)
Q Consensus 48 y~VsIPSw~~v~~-sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~e 126 (533)
-+|.||++.+... ....++|++|.|+|... ...|.|.||||||.+||++|++.||. .+|+||+|+++++++++
T Consensus 16 ~~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~g~~~~~ 89 (130)
T 3p0c_A 16 ENLYFQSMEARVVGSELVDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKIIGKNSRS 89 (130)
T ss_dssp -CCCEECCEEEEEEEECSSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCCSCCCSC
T ss_pred ceeEeeeeEEEEEeccccCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccccccCCHH
Confidence 3566777654222 22457899999999542 47999999999999999999999985 47899999999888899
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
|||+||++||.||+.|+.+|.+++|+.|+.||+.+.+
T Consensus 90 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 126 (130)
T 3p0c_A 90 LVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY 126 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCcc
Confidence 9999999999999999999999999999999998764
No 7
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.88 E-value=9.3e-23 Score=185.27 Aligned_cols=109 Identities=27% Similarity=0.449 Sum_probs=97.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA 126 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr-~~s~e 126 (533)
..|+|+++..+.+ +.+.|++|.|+|... ...|.|.||||||.+||+.|++.||...+ |||+|.+++ +++++
T Consensus 8 ~~v~I~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~~~~~~ 79 (154)
T 1xte_A 8 PSVSIPSSDEHRE--KKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDNFDPD 79 (154)
T ss_dssp CEEEEEEEEEEEE--TTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSCTTCHH
T ss_pred CEEEECCcEEEec--CCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCCCCCHH
Confidence 5799999987654 467899999999642 36899999999999999999999997655 599999888 78899
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchhh
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~aa 164 (533)
|||+||.+||.||+.|+.+|.+++|+.|+.||+.+...
T Consensus 80 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~ 117 (154)
T 1xte_A 80 FIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPR 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGG
T ss_pred HHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCCc
Confidence 99999999999999999999999999999999998653
No 8
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=178.98 Aligned_cols=109 Identities=24% Similarity=0.370 Sum_probs=94.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eF 127 (533)
..|+||++..+.+ +.++|++|.|.|... ...|.|.||||||.+||++|++.||...+|+||+|.++++++++|
T Consensus 6 i~VsIp~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ 78 (134)
T 2v14_A 6 IKISIPRYVLCGQ--GKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERV 78 (134)
T ss_dssp EEEEEEEEEEESS--TTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHH
T ss_pred EEEEECcEEEEec--CCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHH
Confidence 6899999998654 567899999999543 479999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccc-cCCCHHHHh--ccCcchh
Q 009484 128 LEERRCSLEEWMTKLLSDID-LSRSVSVAS--FLELEAA 163 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~-Ls~S~~V~e--FLELd~a 163 (533)
||+||.+||.||+.|+.+|. +++|+.+.. +|.++..
T Consensus 79 ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l~~~~~~~~k~ 117 (134)
T 2v14_A 79 IAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKH 117 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSTTCTTSTTCCCSHH
T ss_pred HHHHHHHHHHHHHHHHhChHhhcCCHHHHccccCCccHH
Confidence 99999999999999999987 888875432 3555543
No 9
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.86 E-value=2e-22 Score=174.89 Aligned_cols=99 Identities=24% Similarity=0.417 Sum_probs=88.8
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCC-CCCCCccc------
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIP-PAPPKGLL------ 120 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LP-pLPpK~lf------ 120 (533)
+.|+||++.. .++|++|.|+| ..|.|.||||||.+||+.|++.|| ..+| +||+|.++
T Consensus 6 ~~v~I~~~~~------~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~ 69 (117)
T 1kmd_A 6 LRIKVDDVKI------NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQ 69 (117)
T ss_dssp CCCEEEEEEE------CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTC
T ss_pred EEEEECCcee------cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccc
Confidence 5688999886 35899999998 389999999999999999999999 5789 99999875
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhccccc---CCCHHHHhccCcch
Q 009484 121 -RMKSRALLEERRCSLEEWMTKLLSDIDL---SRSVSVASFLELEA 162 (533)
Q Consensus 121 -r~~s~eFLEERR~~LE~YLqkLLs~P~L---s~S~~V~eFLELd~ 162 (533)
++++++|||+||++||.||+.|+.||.+ ++|++|++||++++
T Consensus 70 ~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 70 RRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp CCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 5778999999999999999999999965 78999999999874
No 10
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=173.77 Aligned_cols=106 Identities=24% Similarity=0.329 Sum_probs=88.6
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 009484 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (533)
Q Consensus 47 Sy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~e 126 (533)
+..|+||++..... ..+++|++|.|+|... ...|.|.||||||.+||++|++.|| +|+||+|++ ++++++
T Consensus 22 ~~~V~Ip~~~~~~~-~~~k~y~vY~I~v~~~-----~~~w~V~RRYsdF~~L~~~L~~~~~---~p~lP~K~~-~~~~~~ 91 (129)
T 4az9_A 22 SMEVYIPSFRYEES-DLERGYTVFKIEVLMN-----GRKHFVEKRYSEFHALHKKLKKCIK---TPEIPSKHV-RNWVPK 91 (129)
T ss_dssp CCEEEEEEEEEECC-TTSCCEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHTTTSC---CCCCCCSCC-SCCCHH
T ss_pred eeEEEECcEEEEec-CCCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHhCC---CCCCCcccc-cCCCHH
Confidence 36899999987543 2457899999999542 3689999999999999999999876 678888875 466799
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
|||+||.+||.||+.|+.+|.+. ++.|.+||+++..
T Consensus 92 ~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~~ 127 (129)
T 4az9_A 92 VLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRHL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCCC
Confidence 99999999999999999999875 7999999998754
No 11
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.86 E-value=1.4e-21 Score=174.33 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=95.5
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCC
Q 009484 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPP 116 (533)
Q Consensus 45 GwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--------~~LPpLPp 116 (533)
+..+.|+|+++.... +...|++|.|.|.... ...|.|.||||||.+||.+|++.||. ..+|+||+
T Consensus 18 ~~~i~v~I~~~e~~~---~~~~~~vY~I~v~~~~----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~ 90 (143)
T 1h6h_A 18 DVAISANIADIEEKR---GFTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPA 90 (143)
T ss_dssp TCEEEEEEEEEEEEC---SSSCEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCC
T ss_pred CCeEEEEEcCccccC---CCCCeEEEEEEEEEcC----CCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCC
Confidence 456899999986422 3357999999996432 37999999999999999999999993 36899999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhcccc-cCCCHHHHhccCcchh
Q 009484 117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEAA 163 (533)
Q Consensus 117 K~lfr~~s~eFLEERR~~LE~YLqkLLs~P~-Ls~S~~V~eFLELd~a 163 (533)
|.++++ +++|+|+||.+||.||+.|+.+|. +++|+.|.+||+....
T Consensus 91 K~~~~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~ 137 (143)
T 1h6h_A 91 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 137 (143)
T ss_dssp CCCSSC-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred CcccCc-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCcc
Confidence 998877 899999999999999999999997 9999999999988643
No 12
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.84 E-value=1.2e-20 Score=165.26 Aligned_cols=112 Identities=19% Similarity=0.296 Sum_probs=94.1
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC-
Q 009484 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK- 123 (533)
Q Consensus 45 GwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~- 123 (533)
|....|.|+++..... +. .+++|.|.|..... ...|.|+||||||.+||.+|++.||...+|+||+|.+++++
T Consensus 3 ~~i~~v~V~~~ek~~~--~~-k~y~Y~I~v~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~ 76 (121)
T 2ar5_A 3 GRIKEVSVFTYHKKYN--PD-KHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTH 76 (121)
T ss_dssp SSEEEEEEEEEECCCS--SS-SCCEEEEEEEETTC---SSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSS
T ss_pred CeEEEEEECcEEEEec--CC-CcEEEEEEEEECCC---ceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccC
Confidence 5556788998875432 33 44459999965432 25899999999999999999999999899999999887765
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc-cccCCCHHHHhccCcch
Q 009484 124 SRALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELEA 162 (533)
Q Consensus 124 s~eFLEERR~~LE~YLqkLLs~-P~Ls~S~~V~eFLELd~ 162 (533)
+++|+|+||.+||.||+.|++. |.+++|+.|+.||+...
T Consensus 77 ~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 77 IKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 5799999999999999999985 79999999999998764
No 13
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.83 E-value=8.1e-21 Score=168.87 Aligned_cols=92 Identities=26% Similarity=0.346 Sum_probs=82.0
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eFLEERR~~LE~YLqkL 142 (533)
+.++|++|.|.|... ...|.|.||||||.+||++|++.|+ +|+||+|.++ +++++|||+||.+||.||+.|
T Consensus 28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~-~~~~~~ie~Rr~~Le~yL~~l 98 (128)
T 2ett_A 28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP-NWRTRGLEQRRQGLEAYIQGI 98 (128)
T ss_dssp SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC-CSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999653 3689999999999999999999986 7999999965 567899999999999999999
Q ss_pred hcccccCCCHHHHhccCcchhh
Q 009484 143 LSDIDLSRSVSVASFLELEAAA 164 (533)
Q Consensus 143 Ls~P~Ls~S~~V~eFLELd~aa 164 (533)
+.+|.+. +++|.+||+.+...
T Consensus 99 l~~p~~~-s~~l~~FL~~~~~~ 119 (128)
T 2ett_A 99 LYLNQEV-PKELLEFLRLRHFP 119 (128)
T ss_dssp HHHSSSS-CHHHHHHHTCTTCC
T ss_pred HhCchhc-CHHHHHhcCCccCC
Confidence 9999887 79999999988653
No 14
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=199.89 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=83.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~s~eF 127 (533)
|.|.|.....+.+..+.++||+|.|.+. ...|.|.||||||.+||..|.+.||...+||||+|.++++++++|
T Consensus 42 ~~i~V~dp~k~~~~~g~~~y~~Y~I~~~-------~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~g~~~~~f 114 (386)
T 4akv_A 42 FACSVEDPTKQTKFKGIKSYISYKLTPT-------HAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATGRFEEDF 114 (386)
T ss_dssp CCEEEECC------------CCEEEEET-------TSSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC------CCT
T ss_pred eEEEEcCceEecCCCCCcCeEEEEEEEE-------eCCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCcccCCCCHHH
Confidence 5666666665443235678999999993 247999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHhccCcch
Q 009484 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (533)
Q Consensus 128 LEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~ 162 (533)
||+||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 115 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 115 IEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp TTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC
Confidence 99999999999999999999999999999999864
No 15
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.82 E-value=3.3e-21 Score=195.95 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=84.7
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHH
Q 009484 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRA 126 (533)
Q Consensus 48 y~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~-~~LPpLPpK~lfr~~s~e 126 (533)
+.|.|.....+.+..+.++||+|.|.+. ...|.|.||||||.+||..|.+.||. ..+||||+|.++++++++
T Consensus 21 ~~i~V~dp~k~~~~~g~~~y~~Y~I~~~-------~~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g~~~~~ 93 (366)
T 3dyt_A 21 FDCVVADPRKGSKMYGLKSYIEYQLTPT-------NTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEE 93 (366)
T ss_dssp CCEEEECGGGSSSCCCCCSSCEEEEEET-------TCSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-----------
T ss_pred eEEEEcCceeecCCCCCcCeEEEEEEEe-------cCcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcccCCCCHH
Confidence 5566666654432235679999999993 24899999999999999999999998 899999999998888999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHhccCcch
Q 009484 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (533)
Q Consensus 127 FLEERR~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~ 162 (533)
|||+||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 94 fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 94 FIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD 129 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCc
Confidence 999999999999999999999999999999999864
No 16
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.81 E-value=1.1e-19 Score=162.53 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=92.2
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---------CCCCCC
Q 009484 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---------NIPPAP 115 (533)
Q Consensus 45 GwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~---------~LPpLP 115 (533)
|....|.|+++..... ++.|++|.|.|.... ...|.|+||||||.+||.+|++.||.. .+|+||
T Consensus 4 ~~i~~v~V~~~ek~~~---~~~~~~Y~I~V~~~~----~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP 76 (141)
T 1kq6_A 4 TFIRHIALLGFEKRFV---PSQHYVYMFLVKWQD----LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLP 76 (141)
T ss_dssp SCEEEEEEEEEEEECS---SSCEEEEEEEEEETT----CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCC
T ss_pred ceEEEEEEccEEEecC---CCCeEEEEEEEEEcC----CCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCC
Confidence 4556788888875332 345778999996533 368999999999999999999999964 689999
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHhccc-ccCCCHHHHhccCcchh
Q 009484 116 PKGLLRMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLELEAA 163 (533)
Q Consensus 116 pK~lfr~~s~eFLEERR~~LE~YLqkLLs~P-~Ls~S~~V~eFLELd~a 163 (533)
+|.++++ ++|+|+||.+||.||+.|+.+| .+++|++|.+||+....
T Consensus 77 ~K~~~~~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~ 123 (141)
T 1kq6_A 77 APKWFDG--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD 123 (141)
T ss_dssp CCCCCCS--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred CccccCC--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcc
Confidence 9988774 7999999999999999999976 58999999999988654
No 17
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.81 E-value=4.1e-20 Score=171.08 Aligned_cols=115 Identities=23% Similarity=0.264 Sum_probs=96.9
Q ss_pred CCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCccc
Q 009484 43 RTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLL 120 (533)
Q Consensus 43 rtGwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk--~fp~~~LPpLPpK~lf 120 (533)
.+.-.+.|.|....... .||.|.|.+.+..|.+....|.|.||||||.|||+.|.+ .||...+||||+|.++
T Consensus 7 ~~~~~l~i~V~dp~~~~------~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~ 80 (161)
T 3hpc_X 7 NVDPSLQIDIPDALSER------DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF 80 (161)
T ss_dssp CCSCSEEEEEEEEEEET------TEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCC
T ss_pred CCCCeEEEEECCCeEec------CCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccc
Confidence 34445788888877532 299999999888887778899999999999999999998 8999999999999875
Q ss_pred C--------------C------------CCHHHHHHHH---HHHHHHHHHHhcccccCCCHHHHhccCcchh
Q 009484 121 R--------------M------------KSRALLEERR---CSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (533)
Q Consensus 121 r--------------~------------~s~eFLEERR---~~LE~YLqkLLs~P~Ls~S~~V~eFLELd~a 163 (533)
+ . ++++|||+|| ++||.||++|+.||.|++++.|+.||+.+..
T Consensus 81 ~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 81 DGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSC
T ss_pred cchhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCcc
Confidence 3 1 2468999754 5699999999999999999999999998854
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=166.32 Aligned_cols=112 Identities=20% Similarity=0.313 Sum_probs=88.3
Q ss_pred CCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC
Q 009484 44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK 123 (533)
Q Consensus 44 tGwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr~~ 123 (533)
.|....|.|+++..... ++.|++|.|.|..... ...|.|.||||||.+||.+|++.||...+|+||+|++++++
T Consensus 17 ~~~i~~v~I~~~ek~~~---~~k~~~Y~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~ 90 (140)
T 2iwl_X 17 DGRIKEVSVFTYHKKYN---PDKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT 90 (140)
T ss_dssp HCCEEEEEEEEEEECCS---SSSCEEEEEEEEETTC---SSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-------
T ss_pred CCeeEEEEECcEEEEec---CCCeEEEEEEEEECCC---ceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCcc
Confidence 35667899999986432 3456679999965432 25899999999999999999999999889999999887754
Q ss_pred -CHHHHHHHHHHHHHHHHHHhc-ccccCCCHHHHhccCcc
Q 009484 124 -SRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELE 161 (533)
Q Consensus 124 -s~eFLEERR~~LE~YLqkLLs-~P~Ls~S~~V~eFLELd 161 (533)
+++|+|+||.+||.||+.|++ ++.+++|+.|++||+..
T Consensus 91 ~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 91 HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 578999999999999999998 68999999999999864
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.76 E-value=2.5e-18 Score=157.88 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=88.7
Q ss_pred cEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------------CCC
Q 009484 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------------KNI 111 (533)
Q Consensus 46 wSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~--------------~~L 111 (533)
+...|+|+++... .+ +.+|.|.|.... ...|.|+||||||.+||.+|++.||. ..+
T Consensus 17 ~~~~~sI~~~~~~-----~~-~y~Y~I~V~~~d----~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~l 86 (156)
T 2v6v_A 17 LLVKASVESFGLE-----DE-KYWFLVCCELSN----GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIM 86 (156)
T ss_dssp CEEEEEEEEEEEE-----TT-EEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCS
T ss_pred cceEEEEeeEEEE-----CC-EEEEEEEEEEcC----CCEEEEEEEhHHHHHHHHHHHHHcchhhccccccccccccccc
Confidence 4578999999863 23 455999996532 36999999999999999999999984 458
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc-ccccCCCHHHHhccCcch
Q 009484 112 PPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELEA 162 (533)
Q Consensus 112 PpLPpK~lfr~~s~eFLEERR~~LE~YLqkLLs-~P~Ls~S~~V~eFLELd~ 162 (533)
|+||+|.++. +++|+|+||.+||.||+.|+. .+.+++|+.|+.||+...
T Consensus 87 P~LP~K~~~~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 136 (156)
T 2v6v_A 87 PYIPGPVPYV--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLN 136 (156)
T ss_dssp CCCCCCCSSC--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCS
T ss_pred CCCCCCcccC--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCC
Confidence 9999998763 579999999999999999998 557999999999998864
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=152.91 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCC-CHHHHHHHH
Q 009484 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMK-SRALLEERR 132 (533)
Q Consensus 63 ~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~---------~~LPpLPpK~lfr~~-s~eFLEERR 132 (533)
+++.|++|.|.|.... ...|.|+|||+||.+||.+|++.||. ..+|+||+|.+++++ +++++|+||
T Consensus 22 ~~~~y~~Y~I~V~~~d----~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~~~~~~e~R~ 97 (149)
T 2l73_A 22 QIKRLQTFAFSVRWSD----GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARL 97 (149)
T ss_dssp CCSSSCEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCCHHHHHHHHH
T ss_pred CCCceEEEEEEEEEeC----CCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccccchHHHHHHH
Confidence 4678999999996543 36899999999999999999999982 358999999887653 589999999
Q ss_pred HHHHHHHHHHhccc-ccCCCHHHHhccCcch
Q 009484 133 CSLEEWMTKLLSDI-DLSRSVSVASFLELEA 162 (533)
Q Consensus 133 ~~LE~YLqkLLs~P-~Ls~S~~V~eFLELd~ 162 (533)
.+||.||+.|++.| .+++|+.|++||+...
T Consensus 98 ~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 128 (149)
T 2l73_A 98 QLLETYSRRLLATAERVARSPTITGFFAPQP 128 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHSHHHHHHHSCCG
T ss_pred HHHHHHHHHHHhCCccccCCHHHHHHhCCCc
Confidence 99999999999865 4999999999998865
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=146.17 Aligned_cols=106 Identities=23% Similarity=0.254 Sum_probs=88.9
Q ss_pred CCCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 009484 42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121 (533)
Q Consensus 42 ~rtGwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~~LPpLPpK~lfr 121 (533)
.+++..-.|+|.++.. +....|.|+|...+ ...|.|+|||+||..||.+|++.||...+|+||+|++++
T Consensus 20 ~~~~~i~~~~v~~~~k-------~~~~~Yvi~V~~sd----~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~ 88 (127)
T 2wwe_A 20 FQSMSIERATILGFSK-------KSSNLYLIQVTHSN----NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP 88 (127)
T ss_dssp SCSSSEEEEEEEEEET-------TEEEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH
T ss_pred ecCCcEEEEEEEEEEe-------cccEEEEEEEEEeC----CCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC
Confidence 5556667899999863 13466999996544 379999999999999999999999999999999999776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc-ccccCCCHHHHhccCc
Q 009484 122 MKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160 (533)
Q Consensus 122 ~~s~eFLEERR~~LE~YLqkLLs-~P~Ls~S~~V~eFLEL 160 (533)
... .-++ ||++||+||+.|++ +|+|++|+.|.+||..
T Consensus 89 ~t~-~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 89 FTN-SDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHH-CHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred cCH-HHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 542 3344 99999999999999 8999999999999864
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=149.67 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=92.7
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC--------CCCCCCC
Q 009484 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK--------NIPPAPP 116 (533)
Q Consensus 45 GwSy~VsIPSw~~v~~sk~sk~yVvY~VqV~iqsPeg~~~~w~V~RRYSDF~~LhekLkk~fp~~--------~LPpLPp 116 (533)
+....|+|+++..... ...|++|.|.|.... ...|.|+|||+||..||.+|++.||.. .+|+||+
T Consensus 21 ~~~~~v~I~~~~~~~~---~~~~~~Y~i~v~~~~----~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~ 93 (341)
T 2dyb_A 21 DVAISANIADIEEKRG---FTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPA 93 (341)
T ss_dssp TSEEEEEEEEEEEEES---SSEEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCC
T ss_pred CCcEEEEECCeEEecC---CCcEEEEEEEEEEcC----CcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCC
Confidence 4567899999975422 235889999996432 368999999999999999999999943 4899999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhcccc-cCCCHHHHhccCcch
Q 009484 117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA 162 (533)
Q Consensus 117 K~lfr~~s~eFLEERR~~LE~YLqkLLs~P~-Ls~S~~V~eFLELd~ 162 (533)
|.++++ ..+|+|+|+..|+.||+.|+..|. +++|+.|..||....
T Consensus 94 k~~~~~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~ 139 (341)
T 2dyb_A 94 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP 139 (341)
T ss_dssp CCCCSC-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCH
T ss_pred ccccCc-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Confidence 988876 468999999999999999999886 999999999998765
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.82 E-value=4.3 Score=42.41 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccccchh
Q 009484 453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCCRME 496 (533)
Q Consensus 453 e~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~~~~ 496 (533)
+.|++.+-..++++-+++=+++.++++..++|.++.---|-+--
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~ 590 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRV 590 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 35555666666677777777777777777777777655444433
No 24
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=73.96 E-value=7.8 Score=36.42 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=55.2
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHh-----hhhHHHH-----HHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhh
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRL-----NQEMTVK-----DYLMTKVKDLEVELETTKQKSKETLQQAILSERER 465 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarl-----nqe~avk-----~~l~tkvkdlevelett~~~~ke~lqqavl~erer 465 (533)
..+-.|...+...+..++..+.++..-| .||+..+ +=|.+.+.+|...|+-..+.-++.|++.+-.=|++
T Consensus 24 s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~~ 103 (191)
T 1nfn_A 24 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQAR 103 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 3567788888889999999999888776 3333210 11222333344444444444455666665555554
Q ss_pred hhhhhcchHHHHHHHHHHHHhhhhccccc
Q 009484 466 LTQMQWDMEELRQKSLEMEWKLKSKQCCR 494 (533)
Q Consensus 466 ~tq~qwdmeelr~~~~e~e~~lks~~~~~ 494 (533)
|++|||+||.++.-+=..|+..-...
T Consensus 104 ---l~kdlEelr~kL~P~~eEL~~~l~~~ 129 (191)
T 1nfn_A 104 ---LGADMEDVCGRLVQYRGEVQAMLGQS 129 (191)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 48999999999887766666554433
No 25
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.30 E-value=5.1 Score=32.96 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=34.8
Q ss_pred chhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhh
Q 009484 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (533)
Q Consensus 394 ~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~ 448 (533)
+|..++++|..+..-|..+|.||+.. ++|. ++-|..|++ ||+|+.|-|
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~q----l~EY--q~LlniKl~-Le~EIatYR 53 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQ----LDEY--QELLDIKLA-LDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHH-HHHHHHHHH
Confidence 57888899999999999999988654 4443 556666664 677776654
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.93 E-value=9 Score=44.61 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=7.1
Q ss_pred hhhhcccchhhhHHhhh
Q 009484 433 LMTKVKDLEVELETTKQ 449 (533)
Q Consensus 433 l~tkvkdlevelett~~ 449 (533)
|..||..||.|..-.+|
T Consensus 1021 L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 27
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.39 E-value=32 Score=31.93 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=62.0
Q ss_pred HHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHH
Q 009484 404 TMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEM 483 (533)
Q Consensus 404 t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~ 483 (533)
.+..++....+.+..|-++|..|-+-|.=.-...+.+|.|||..--.-=+--..-|-.+|----..+=-.+.|++++.+.
T Consensus 48 ~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 48 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888899999999999999999999999999999876554433333334444333223333456788888888
Q ss_pred HHhhhhccc
Q 009484 484 EWKLKSKQC 492 (533)
Q Consensus 484 e~~lks~~~ 492 (533)
+..|.+.++
T Consensus 128 ~~~l~~lq~ 136 (154)
T 2ocy_A 128 DTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 28
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=58.83 E-value=16 Score=34.37 Aligned_cols=26 Identities=46% Similarity=0.652 Sum_probs=11.8
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHh
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRL 423 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarl 423 (533)
+.+|..-+..++++| ..|||+|=++|
T Consensus 90 ~~~l~~~~e~lr~~l---~kdlEelr~kL 115 (191)
T 1nfn_A 90 RARLSKELQAAQARL---GADMEDVCGRL 115 (191)
T ss_dssp --CHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 334444455555544 44555554443
No 29
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=58.73 E-value=9.1 Score=37.89 Aligned_cols=90 Identities=14% Similarity=0.271 Sum_probs=45.4
Q ss_pred chhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHH-HHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhh-hhhhc
Q 009484 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT-VKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL-TQMQW 471 (533)
Q Consensus 394 ~r~kl~rvl~t~~~rl~taktdmedliarlnqe~a-vk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~-tq~qw 471 (533)
-|.+|..-+..++.+|. -.+++|-+++++++. ||+=|+-... ||-+.-++.-|.|++.+----+.+ +++.-
T Consensus 16 lr~~l~~~~eel~~~L~---P~~~~l~~~l~~~le~lr~~L~Py~~----el~~~~~~~~eelr~kL~p~~~el~~~l~~ 88 (273)
T 3s84_A 16 LKEEIGKELEELRARLL---PHANEVSQKIGDNLRELQQRLEPYAD----QLRTQVNTQAEQLRRQLTPYAQRMERVLRE 88 (273)
T ss_dssp HHHHHHHHHHHHHHHHG---GGHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 47777777788887776 356777777777653 2332222222 222222222333333322222222 44455
Q ss_pred chHHHHHHHHHHHHhhhhc
Q 009484 472 DMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 472 dmeelr~~~~e~e~~lks~ 490 (533)
+|||||.++.-+=.+||..
T Consensus 89 ~~eeLr~~L~p~~eelr~k 107 (273)
T 3s84_A 89 NADSLQASLRPHADELKAK 107 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6677777765444444443
No 30
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=55.55 E-value=51 Score=29.23 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHh
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRL 423 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarl 423 (533)
|++=|.+|+..+......+++|-..|
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l 29 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADK 29 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555555555555555554433
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.03 E-value=20 Score=37.48 Aligned_cols=16 Identities=13% Similarity=-0.124 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHhhh
Q 009484 473 MEELRQKSLEMEWKLK 488 (533)
Q Consensus 473 meelr~~~~e~e~~lk 488 (533)
++++++++.++..+++
T Consensus 546 ~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 546 NIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHHH
Confidence 3344444444444433
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.21 E-value=2.8 Score=48.74 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHH
Q 009484 403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (533)
Q Consensus 403 ~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e 482 (533)
..+++++...+.+.+.+-.++++--..+.-|...+.+||.+++..++.. +.+++.+-.-.+.+.+++-.+++++.+..+
T Consensus 1007 ~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~-~ele~~~~~le~el~~l~~el~el~~el~~ 1085 (1184)
T 1i84_S 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR-QELEKIKRKLEGESSDLHEQIAELQAQIAE 1085 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333344445556666666555543322 222222221123334444444444444444
Q ss_pred HHHhhhh
Q 009484 483 MEWKLKS 489 (533)
Q Consensus 483 ~e~~lks 489 (533)
++.+++.
T Consensus 1086 le~~l~~ 1092 (1184)
T 1i84_S 1086 LKAQLAK 1092 (1184)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.73 E-value=84 Score=27.23 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=52.1
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHH
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE 462 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~e 462 (533)
.+++-=|..++.++....+.+..|-++|..|-+-|.=.-...+.+|.|||..-..-=+---.-|-.+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888888899999999999999999999999999999999876655444444445544
No 34
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.77 E-value=20 Score=32.66 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Q 009484 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480 (533)
Q Consensus 401 vl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~ 480 (533)
=+..++..+...++.+.+|-.+|..|-+-|.=.-...+.+|.|||..-..-=+---.-|-.+|----..+=-.+.|+++.
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666777788888888888888888888888888888876555444444445444333233333345566666
Q ss_pred HHHHHhhhhcc
Q 009484 481 LEMEWKLKSKQ 491 (533)
Q Consensus 481 ~e~e~~lks~~ 491 (533)
-+.|.-|.+.|
T Consensus 113 ~e~e~ll~~lq 123 (135)
T 2e7s_A 113 REKDMLLDTLT 123 (135)
T ss_dssp THHHHCC----
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.86 E-value=16 Score=42.63 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=28.0
Q ss_pred hhhhcccchhhhHHhhhhhH------HHHHHHHHHH----hhhhhhhhcchHHHHHHHHHHHHhhhh
Q 009484 433 LMTKVKDLEVELETTKQKSK------ETLQQAILSE----RERLTQMQWDMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 433 l~tkvkdlevelett~~~~k------e~lqqavl~e----rer~tq~qwdmeelr~~~~e~e~~lks 489 (533)
+..||+.||.|++.++.... +.+++++-.. .|.++.|+=....||++..++|..++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665554332 2223322111 144445555555566666666644433
No 36
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=47.29 E-value=17 Score=31.49 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=33.3
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccc
Q 009484 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDL 440 (533)
Q Consensus 396 ~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdl 440 (533)
+-|.-+..-|.+-...++.|||+=|++|++||++=|-+..+-|-|
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334445556666677899999999999999999988777765544
No 37
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.80 E-value=12 Score=35.22 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=43.5
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhh
Q 009484 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ 449 (533)
Q Consensus 388 ~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~ 449 (533)
+=|..+|+.|++.|....+.....-+..|-++-+-|+++++-..|=..||+.|-.|+...++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQ 127 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 55889999999999998887766666666666677777766666666666666666555443
No 38
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=46.14 E-value=18 Score=29.97 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=23.3
Q ss_pred hhhcccchhhhHHhhhhhHHHHH--HHHHHHhhhhhhhhcchH-HHHHHHHHHH
Q 009484 434 MTKVKDLEVELETTKQKSKETLQ--QAILSERERLTQMQWDME-ELRQKSLEME 484 (533)
Q Consensus 434 ~tkvkdlevelett~~~~ke~lq--qavl~erer~tq~qwdme-elr~~~~e~e 484 (533)
..++.+||.||..+|......++ |.+|. ..|.+|+| .-.||++|=|
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq~Lln-----vK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQELLD-----IKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHcCC
Confidence 34455556666666655433222 22222 34556666 4566666654
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.78 E-value=67 Score=28.84 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=42.0
Q ss_pred HhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhh
Q 009484 410 VTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKL 487 (533)
Q Consensus 410 ~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~l 487 (533)
.|.+--|++|-+-|--|.|-. -.+|++|+.|+++.+|+-++-.. ++|.||+...++-..+
T Consensus 49 aTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~a---------------e~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 49 ATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASA---------------EVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhhchhhhhHh
Confidence 344455778888888887776 45799999999999987655433 3566777766554443
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.65 E-value=1.2e+02 Score=25.61 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=37.1
Q ss_pred HhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Q 009484 432 YLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEME 484 (533)
Q Consensus 432 ~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e 484 (533)
-|+.|+.-||.|||.+....++..+++-..|+ +.|..-=++.-|=|+..-+|
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek-~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE-NAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999998888877666555543 34655556666666665555
No 41
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=43.84 E-value=1.1e+02 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=7.0
Q ss_pred HHHHHHhhcccHHHHHHH
Q 009484 405 MERRLVTAKTDMEDLITR 422 (533)
Q Consensus 405 ~~~rl~taktdmedliar 422 (533)
+++|+.....+++.+-.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~ 105 (284)
T 1c1g_A 88 LNRRIQLFEEELDRAQER 105 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444433333333333
No 42
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.35 E-value=77 Score=33.96 Aligned_cols=106 Identities=13% Similarity=0.248 Sum_probs=55.8
Q ss_pred cCCceEEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhh-hhHHHHHH---hhhhcccchhhhHHhh---hhhHHHH
Q 009484 383 SGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLN-QEMTVKDY---LMTKVKDLEVELETTK---QKSKETL 455 (533)
Q Consensus 383 ~~d~~~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarln-qe~avk~~---l~tkvkdlevelett~---~~~ke~l 455 (533)
+.+..+..|.- =-|.-.|.+.|+=+.+.=-+|||.+.+|. +...+++| |.++.+..|-.+.... ++-.+.|
T Consensus 74 ~~~~G~~CPTt--C~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 74 LDELGVLCPTG--CELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp STTTCEEEECT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCcCCCc--cHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 46677777873 22233344555545455556666666663 34555666 4555444443332222 1222223
Q ss_pred HHHHHHHhhhhh--------hhhcchHHHHHHHHHHHHhhhhc
Q 009484 456 QQAILSERERLT--------QMQWDMEELRQKSLEMEWKLKSK 490 (533)
Q Consensus 456 qqavl~erer~t--------q~qwdmeelr~~~~e~e~~lks~ 490 (533)
++......|.+. .+|=.+++|+.|...+|.++...
T Consensus 152 e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 152 ELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 23445789999999999988753
No 43
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.76 E-value=25 Score=28.92 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=21.9
Q ss_pred hhhcccchhhhHHhhhhhHHHHH--HHHHHHhhhhhhhhcchH-HHHHHHHHH
Q 009484 434 MTKVKDLEVELETTKQKSKETLQ--QAILSERERLTQMQWDME-ELRQKSLEM 483 (533)
Q Consensus 434 ~tkvkdlevelett~~~~ke~lq--qavl~erer~tq~qwdme-elr~~~~e~ 483 (533)
..++..||.+|..+|+.....++ |.+|. ..|..|+| .-.||++|=
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln-----vK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLN-----VKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHcC
Confidence 34555666666666554433221 22222 23455665 455566553
No 44
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.56 E-value=13 Score=25.35 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHh
Q 009484 420 ITRLNQEMTVKDYL 433 (533)
Q Consensus 420 iarlnqe~avk~~l 433 (533)
-|||-||+|.-+|=
T Consensus 9 narlkqeiaaleye 22 (28)
T 3ra3_B 9 NARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 48999999987773
No 45
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=39.64 E-value=16 Score=32.01 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.1
Q ss_pred cccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhh
Q 009484 413 KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (533)
Q Consensus 413 ktdmedliarlnqe~avk~~l~tkvkdlevelett~ 448 (533)
..|.++|+.++.+|.+--+-|..+|.+||.||+..|
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999998776
No 46
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=39.29 E-value=30 Score=26.94 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhh
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~ 448 (533)
++..+..+..-|..+|.||+. .++|. .+-|..|++ ||+|+.|-|
T Consensus 5 ~q~~i~~le~el~~~r~e~~~----q~~eY--q~LlniK~~-Le~EIatYR 48 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVAR----LKKLV--GDLLNVKMA-LDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHH-hHHHHHHHH
Confidence 556677777777777777754 34443 556666664 677776654
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.14 E-value=50 Score=27.19 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=28.2
Q ss_pred hhhhcccchhhhHHhhhh---hHHHHHHHHHHHhhhhhhhhcchHHHHHHHHH
Q 009484 433 LMTKVKDLEVELETTKQK---SKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (533)
Q Consensus 433 l~tkvkdlevelett~~~---~ke~lqqavl~erer~tq~qwdmeelr~~~~e 482 (533)
|--+|.+||..||.++.+ -|..+++++ |.|-.==-||-|||+.+..
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~----e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLL----EILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Confidence 778888999999888743 223444443 3333334566777777653
No 48
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.98 E-value=82 Score=25.54 Aligned_cols=54 Identities=22% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHH
Q 009484 404 TMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ 457 (533)
Q Consensus 404 t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqq 457 (533)
.-+.|+..+.+++++.-.|+-|--.--.=|+.|+.-||.+||.+..+..+...+
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555544442222222238888888888888887776655443
No 49
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=37.71 E-value=76 Score=31.96 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=20.6
Q ss_pred hHhHHHHHHHHHHHhhcccHHHHHHHh
Q 009484 397 KLSRVLLTMERRLVTAKTDMEDLITRL 423 (533)
Q Consensus 397 kl~rvl~t~~~rl~taktdmedliarl 423 (533)
.+-.|...+.--+..+++.+.++..-|
T Consensus 33 ~~e~v~~~fwdY~~~~~~~a~~~~eql 59 (307)
T 2l7b_A 33 RWELALGRFWDYLRWVQTLSEQVQEEL 59 (307)
T ss_dssp HHHHHHHHHHHHHHHTCCCSTHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888887443
No 50
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=36.98 E-value=21 Score=29.30 Aligned_cols=34 Identities=38% Similarity=0.503 Sum_probs=27.2
Q ss_pred hcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 009484 436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (533)
Q Consensus 436 kvkdlevelett~~~~ke~lqqavl~erer~tq~q 470 (533)
-|.|.|.|||.-|.+-| .|+|-|-.||=|+.-+|
T Consensus 27 ~vgdiEqeLe~Ck~sIr-rLE~evn~ErFrmIYLQ 60 (72)
T 1k1f_A 27 SVGDIEQELERAKASIR-RLEQEVNQERFRMIYLQ 60 (72)
T ss_dssp SHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH
Confidence 47899999998776665 58889988888887666
No 51
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=36.07 E-value=67 Score=29.56 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=21.4
Q ss_pred hhhhcchHHHHHHHHHHHHhhhhccccchh
Q 009484 467 TQMQWDMEELRQKSLEMEWKLKSKQCCRME 496 (533)
Q Consensus 467 tq~qwdmeelr~~~~e~e~~lks~~~~~~~ 496 (533)
+++++.+||+|.++...=.+|+..-...++
T Consensus 124 ~~l~~~~EelR~kl~P~~eeL~~~~~~~~e 153 (165)
T 1gs9_A 124 AMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (165)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 567888888888887777777665554443
No 52
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=35.05 E-value=99 Score=28.40 Aligned_cols=70 Identities=27% Similarity=0.341 Sum_probs=36.1
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHH-HHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcch
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT-VKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDM 473 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarlnqe~a-vk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdm 473 (533)
+.++..=+..++++|.. |||||=+||.+-++ +++- |+-.+|..|++-..-++.- .++...+|
T Consensus 90 ~~~l~~~~e~Lr~~L~~---d~EelR~~l~p~~~el~~~-------l~~~~EelR~kl~P~~eeL-------~~~~~~~~ 152 (165)
T 1gs9_A 90 RARLSKELQAAQARLGA---DMEDVRGRLVQYRGEVQAM-------LGQSTEELRVRLASHLRKL-------RKRLLRDA 152 (165)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHhhH
Confidence 44555555555555542 56666555544432 2222 2223344444444443332 35666789
Q ss_pred HHHHHHHH
Q 009484 474 EELRQKSL 481 (533)
Q Consensus 474 eelr~~~~ 481 (533)
||||+++.
T Consensus 153 eeLr~kL~ 160 (165)
T 1gs9_A 153 DDLQKRLA 160 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998864
No 53
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=34.94 E-value=3.4e+02 Score=26.68 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhh
Q 009484 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 428 avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lk 488 (533)
++|+-|.--+.++-..|...=+.-+..|++..-.=|+|+.+ .+||||.++.-+=..++
T Consensus 136 eLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~---~~eeLr~~L~p~ae~lr 193 (273)
T 3s84_A 136 ELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISA---SAEELRQRLAPLAEDVR 193 (273)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34444444444444443333222233334444333444332 24555555544444443
No 54
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=34.82 E-value=53 Score=33.12 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=18.2
Q ss_pred hhhhcchHHHHHHHHHHHHhhhhccccc
Q 009484 467 TQMQWDMEELRQKSLEMEWKLKSKQCCR 494 (533)
Q Consensus 467 tq~qwdmeelr~~~~e~e~~lks~~~~~ 494 (533)
++++|+||+||.++.-+=.+|+..-+..
T Consensus 132 ~~l~~~~eelr~kL~Py~~EL~~~~~~~ 159 (307)
T 2l7b_A 132 AMLGQSTEELRVRLASHLRKLRKRLLRD 159 (307)
T ss_dssp HHSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888877776666665544433
No 55
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.91 E-value=1.1e+02 Score=32.12 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhh--------hHHhhhhhHHHHHHHHHHH------h
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVE--------LETTKQKSKETLQQAILSE------R 463 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdleve--------lett~~~~ke~lqqavl~e------r 463 (533)
|.-.|++.++=+-+.=-+||+++.+|-+-...-..|..+++|.-.+ .|..-|++|+-+++.+-.| -
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~ 104 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHE 104 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 3445555555455544556666666655555555555555555222 1111234444444332222 2
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhh
Q 009484 464 ERLTQMQWDMEELRQKSLEMEWKL 487 (533)
Q Consensus 464 er~tq~qwdmeelr~~~~e~e~~l 487 (533)
+.+.+||=.++++..|+.+++.++
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555554555555555554444
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.64 E-value=42 Score=28.06 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=8.9
Q ss_pred hhhhcccchhhhHHhh
Q 009484 433 LMTKVKDLEVELETTK 448 (533)
Q Consensus 433 l~tkvkdlevelett~ 448 (533)
|--+|.+||..||.+|
T Consensus 25 Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 25 LEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 57
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.47 E-value=58 Score=31.30 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=52.2
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhH-HHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhh----
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEM-TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM---- 469 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedliarlnqe~-avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~---- 469 (533)
|.+|.-++..|+.|+ .++||+|=++|..-+ .+|+=|...|..|..-|.-.-+.-|+.+.+.|-.=|+.++-.
T Consensus 116 r~~L~P~~eel~~~~---~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~ 192 (243)
T 2a01_A 116 RQKVEPLRAELQEGA---RQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEY 192 (243)
T ss_dssp HTTHHHHHHHHHHHH---HHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHH---HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 334444444444333 344555544443221 356666777777777776666666777777776667766532
Q ss_pred --hc--chHHHHHHHHHHHHhhhh
Q 009484 470 --QW--DMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 470 --qw--dmeelr~~~~e~e~~lks 489 (533)
|| -+++||.++.-.=..||.
T Consensus 193 ~~kl~~~~e~lr~~l~p~~e~lk~ 216 (243)
T 2a01_A 193 HAKATEHLSTLSEKAKPALEDLRQ 216 (243)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 22 377777776655555544
No 58
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.12 E-value=1.4e+02 Score=31.90 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=47.0
Q ss_pred cchhhHhHHHHHHHHHHHhhc---ccHHH----HHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHH--------
Q 009484 393 DQRHKLSRVLLTMERRLVTAK---TDMED----LITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ-------- 457 (533)
Q Consensus 393 d~r~kl~rvl~t~~~rl~tak---tdmed----liarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqq-------- 457 (533)
.+...++.-|..|+.+|.... +...+ |.+.|++.=....-+..+|++.+.+||.-...-+|.+.+
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~ 172 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV 172 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 343445555666666654432 23233 334554444444445556667777777766666655532
Q ss_pred ---HHHHHhhhhhhhhcchHHHHHHHH
Q 009484 458 ---AILSERERLTQMQWDMEELRQKSL 481 (533)
Q Consensus 458 ---avl~erer~tq~qwdmeelr~~~~ 481 (533)
.+-.=++++.++.-.+..+..+|.
T Consensus 173 L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 173 LRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222225667666666666555553
No 59
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.86 E-value=2.2e+02 Score=23.79 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=27.5
Q ss_pred hhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Q 009484 433 LMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEME 484 (533)
Q Consensus 433 l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e 484 (533)
|..|++-||.+||.+....++..++.-.. +.+.|.--=++.-|=|+.+-+|
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~-ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQA-EKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 67777777777777666555444333222 3333544444555555444443
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.75 E-value=76 Score=30.48 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=48.7
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHH---HHHhhhhHHHHH--------Hhh-----hhcccchhhhHHhhhhhHHHHHHH
Q 009484 395 RHKLSRVLLTMERRLVTAKTDMEDL---ITRLNQEMTVKD--------YLM-----TKVKDLEVELETTKQKSKETLQQA 458 (533)
Q Consensus 395 r~kl~rvl~t~~~rl~taktdmedl---iarlnqe~avk~--------~l~-----tkvkdlevelett~~~~ke~lqqa 458 (533)
-..|..-+..++.+++.+++.++|+ |++++++++--. -|. .-..+|+.|++..+. -.+.++.-
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~-~i~~lE~e 112 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE-RSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445555666667776666655544 556666654211 110 112245566665543 33344444
Q ss_pred HHHHhhhhhhhhcchHHHHHHHHHHHHhhhhcc
Q 009484 459 ILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ 491 (533)
Q Consensus 459 vl~erer~tq~qwdmeelr~~~~e~e~~lks~~ 491 (533)
|+.=-+++-..+=.++++..+..+.+..|...+
T Consensus 113 ile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 113 IENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554445555666666666665555443
No 61
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=31.49 E-value=35 Score=27.58 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHhhcccHHHHHHHhhhhHHHHHHhh
Q 009484 405 MERRLVTAKTDMEDLITRLNQEMTVKDYLM 434 (533)
Q Consensus 405 ~~~rl~taktdmedliarlnqe~avk~~l~ 434 (533)
+.+=.....-|.+.|++.||+-++-|+.|.
T Consensus 41 LeeA~~~hgiD~d~ll~eLn~~i~~~~~~~ 70 (76)
T 2k53_A 41 IEDACAVHGIDADKLVKELNEYFEKKEVLE 70 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcchHh
Confidence 333444556799999999999999998874
No 62
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=31.40 E-value=60 Score=30.27 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=16.4
Q ss_pred HHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhh
Q 009484 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466 (533)
Q Consensus 428 avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~ 466 (533)
-..+|+..|++|=|.=|+..=+..+ .|-.=||+=||=+
T Consensus 60 wL~~F~s~~iqDGe~fl~~L~~E~~-~LA~RIM~VRehl 97 (155)
T 3hyb_A 60 WLHNFSAGKVQDGEKYIEELFLEKP-DLALRIMTVREHI 97 (155)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccHHHHHHHHHhhCH-HHHHHHHHHHHHH
Confidence 3444445555554444444433322 3444444444443
No 63
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.40 E-value=1.9e+02 Score=25.24 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=43.2
Q ss_pred ccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhh
Q 009484 414 TDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 414 tdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lk 488 (533)
+|.|+..+|| ++-|.=|-.||++|+..||.....+ ..+..++.++ +=++++|+.++-+.|..|.
T Consensus 65 ~e~EE~~~~L---~~~k~eLe~~l~el~~rleeeee~~-----~~L~~~kkkl---e~e~~~Lk~~led~e~~l~ 128 (129)
T 2fxo_A 65 ADAEERCDQL---IKNKIQLEAKVKEMNKRLEDEEEMN-----AELTAKKRKL---EDECSELKRDIDDLELTLA 128 (129)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---HHHHHHHHHHHHHHHTTTC
T ss_pred HhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---HHHHHHHHHHHHHHHHhhc
Confidence 3555555544 6778888899999988888755444 3344555554 3467888888888877653
No 64
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=30.90 E-value=1.5e+02 Score=28.31 Aligned_cols=78 Identities=8% Similarity=0.237 Sum_probs=58.9
Q ss_pred cchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHH-HHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhc
Q 009484 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT-VKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW 471 (533)
Q Consensus 393 d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~a-vk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qw 471 (533)
|-...|+--...++.+|. .|++++-+||.++++ +|+=|.+-+.++-..|+.....-++.+++=+-.=|++++.+-.
T Consensus 48 d~~~~l~~~~~~l~~~l~---p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~e 124 (243)
T 2a01_A 48 DNWDSVTSTFSKLREQLG---PVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRA 124 (243)
T ss_dssp SSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---CcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666666777777776 477888899988876 7777888888888888888888888877777777777776544
Q ss_pred ch
Q 009484 472 DM 473 (533)
Q Consensus 472 dm 473 (533)
+|
T Consensus 125 el 126 (243)
T 2a01_A 125 EL 126 (243)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.58 E-value=1.8e+02 Score=29.68 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=42.2
Q ss_pred hcccHHHHHHHhhhh-HHHHHHhhhhcccchh----------hhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Q 009484 412 AKTDMEDLITRLNQE-MTVKDYLMTKVKDLEV----------ELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480 (533)
Q Consensus 412 aktdmedliarlnqe-~avk~~l~tkvkdlev----------elett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~ 480 (533)
.|..+|-.+..+-++ -+.++.+...++.+|+ +......+-.|+|++..-.||||+.+. |+..+...
T Consensus 368 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 444 (487)
T 3oja_A 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD---WDMYQHKE 444 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhh---hhhhhhHH
Confidence 344444444433322 2445666677777775 334556677889999999999997774 55555444
Q ss_pred HHHH
Q 009484 481 LEME 484 (533)
Q Consensus 481 ~e~e 484 (533)
..++
T Consensus 445 ~~~~ 448 (487)
T 3oja_A 445 TQLA 448 (487)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 66
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.61 E-value=44 Score=35.20 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHH
Q 009484 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQ 456 (533)
Q Consensus 398 l~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lq 456 (533)
++.+..-|.+|+..-|.-+.+=|.+|+.-=.|=+=+.-|++.||+.+|--+.-|+-..-
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~ 169 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS 169 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33444444444444444444444444443344334444455555555444444444443
No 67
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.96 E-value=1.2e+02 Score=33.36 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=25.1
Q ss_pred hhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhh
Q 009484 443 ELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKS 489 (533)
Q Consensus 443 elett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks 489 (533)
|||...+--|+.++--| .++-.+|=.++++|.|.+-+|.-+-.
T Consensus 114 ELRRrIqyLKekVdnQl----snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV----QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333 45556777788888888877765443
No 68
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.87 E-value=90 Score=25.37 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhh
Q 009484 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ 449 (533)
Q Consensus 401 vl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~ 449 (533)
.|..++.++.+-|.+.+.++.++.+==.=|+|--.|.+|+|.-.+....
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4667777787788888888888888777899999999999988776543
No 69
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.33 E-value=1.2e+02 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=33.3
Q ss_pred hhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHH
Q 009484 411 TAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETL 455 (533)
Q Consensus 411 taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~l 455 (533)
|-+--|+.|-+-|--|.|--+-=-.+|++||.|+++.+|+-++-.
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457777777777777654445679999999999999876654
No 70
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=26.64 E-value=96 Score=23.97 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=32.8
Q ss_pred cccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 009484 413 KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (533)
Q Consensus 413 ktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~q 470 (533)
.++||.+++= +.++|+-+..+++..++.++.. +..|-....++.|++
T Consensus 14 ~~~~e~iv~~----------l~~~v~~~~~~le~~~~q~~~~-~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 14 TATFENIVCV----------LNREVERVAMTAEACSRQHRLD-QDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HhhHHHHHHHHHHHHHhhhhHH-HhHHHHHHHHHHHHH
Confidence 3456666653 5567777788888888887776 777777777776654
No 71
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.47 E-value=61 Score=27.06 Aligned_cols=18 Identities=33% Similarity=0.673 Sum_probs=8.1
Q ss_pred HhhcccHHHHHHHhhhhH
Q 009484 410 VTAKTDMEDLITRLNQEM 427 (533)
Q Consensus 410 ~taktdmedliarlnqe~ 427 (533)
..-++=.+|+|.||-||.
T Consensus 38 ~~G~~KL~~mi~~l~~E~ 55 (78)
T 3iv1_A 38 KKGHQKLEEMVTRLDQEV 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 333344444455554444
No 72
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.46 E-value=2.8e+02 Score=23.15 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHH
Q 009484 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481 (533)
Q Consensus 402 l~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~ 481 (533)
|.+++..+..-|.|-|..+.|..|-=+=..=+..+-..+|.|+...+.|.+ .+++-+-.=-+++...+=.+|+-+++..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq-~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK-GTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778888888888877433333334455567777777777774 4444444444566666666666666666
Q ss_pred HHHHhhhh
Q 009484 482 EMEWKLKS 489 (533)
Q Consensus 482 e~e~~lks 489 (533)
+.|..+.+
T Consensus 83 ~AE~evas 90 (101)
T 3u59_A 83 DAEAEVAS 90 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 73
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.00 E-value=61 Score=31.71 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Q 009484 427 MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEME 484 (533)
Q Consensus 427 ~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e 484 (533)
-+||+||+.+.+.+-.+|.-..++-... |+-...|+=-|++||++.-|.-
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~--------~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRT--------RDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777666655554444333222 2223455567889999887764
No 74
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.71 E-value=67 Score=26.66 Aligned_cols=49 Identities=31% Similarity=0.456 Sum_probs=36.6
Q ss_pred cHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHH
Q 009484 415 DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELR 477 (533)
Q Consensus 415 dmedliarlnqe~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr 477 (533)
|||+=|.||..-+ +-|.||...|=+|.+.+++|-| .|+|++-|-+-.++
T Consensus 4 dlEEKv~~LE~sl---d~LQTrfARLLaEy~ssQ~KLK-----------qRit~LE~~~~~~~ 52 (74)
T 3swf_A 4 GLEEKVTRMESSV---DLLQTRFARILAEYESMQQKLK-----------QRLTKVEKFLKPLI 52 (74)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhcccC
Confidence 6777777775544 6689999999999999988875 47887776555443
No 75
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=23.16 E-value=1.3e+02 Score=27.19 Aligned_cols=51 Identities=31% Similarity=0.432 Sum_probs=25.0
Q ss_pred ccHHHHHHHh---hhhHH-----HHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHh----hhhhhhh
Q 009484 414 TDMEDLITRL---NQEMT-----VKDYLMTKVKDLEVELETTKQKSKETLQQAILSER----ERLTQMQ 470 (533)
Q Consensus 414 tdmedliarl---nqe~a-----vk~~l~tkvkdlevelett~~~~ke~lqqavl~er----er~tq~q 470 (533)
.|=|..|+.| ||+.| ||+.|...|+|. .....++.+||+=+.=| ||+||+-
T Consensus 51 ~DGe~fl~~L~~E~~~LA~RIM~vR~hla~~v~d~------l~eMv~~~I~q~N~e~~Rq~Ler~t~~~ 113 (126)
T 3ka1_A 51 QDGERYLEALFREQPDLGFRILTVREHLAEMVADY------LPEMLRAGIQQANLQQRAQQLERMTQVS 113 (126)
T ss_dssp SCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3555555555 55543 556666555433 33444555555433222 5666653
No 76
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.90 E-value=1.8e+02 Score=24.59 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=12.3
Q ss_pred HhhhhhhhhcchHHHHHHHHHHHHhhh
Q 009484 462 ERERLTQMQWDMEELRQKSLEMEWKLK 488 (533)
Q Consensus 462 erer~tq~qwdmeelr~~~~e~e~~lk 488 (533)
+|.+| +.+||+++..|..++.
T Consensus 72 ~Rk~~------v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 72 GREAQ------VKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHHHHHHHh
Confidence 55555 4566666666655553
No 77
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.16 E-value=26 Score=28.77 Aligned_cols=54 Identities=39% Similarity=0.642 Sum_probs=35.7
Q ss_pred hHHHHHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhhhhccccchhhhhhhhhcC
Q 009484 426 EMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQCCRMETHMQSQWKN 505 (533)
Q Consensus 426 e~avk~~l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~lks~~~~~~~~~~~~~~~~ 505 (533)
|+|+| |+.. --|||||.+.|-.|--|.. | -|||+|-+|. -..+|.||..
T Consensus 17 eialk-fisq-gldlevefdstddkeieef--------e------rdmedlakkt---------------gvqiqkqwqg 65 (83)
T 2ln3_A 17 EIALK-FISQ-GLDLEVEFDSTDDKEIEEF--------E------RDMEDLAKKT---------------GVQIQKQWQG 65 (83)
T ss_dssp HHHHH-HHHH-TCEEEEEECCCCHHHHHHH--------H------HHHHHHHHHH---------------TCCEEEEEET
T ss_pred HHHHH-HHhc-CCceEEEecCCChHHHHHH--------H------hHHHHHHHhh---------------chhHHHHhcC
Confidence 67776 5443 4599999999987754433 2 2889887764 2356778875
Q ss_pred chhhh
Q 009484 506 PLSRI 510 (533)
Q Consensus 506 ~~~~~ 510 (533)
---||
T Consensus 66 nklri 70 (83)
T 2ln3_A 66 NKLRI 70 (83)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 44444
No 78
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.09 E-value=1.6e+02 Score=22.18 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=17.1
Q ss_pred HHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhh
Q 009484 418 DLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS 451 (533)
Q Consensus 418 dliarlnqe~avk~~l~tkvkdlevelett~~~~ 451 (533)
.|+|.|-.|+| .||.|-||.|.|+
T Consensus 3 nlvaqleneva----------slenenetlkkkn 26 (49)
T 3he5_A 3 NLVAQLENEVA----------SLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH----------HhhcccHHHHHhc
Confidence 35666666655 5888999988765
No 79
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.80 E-value=2.1e+02 Score=30.21 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=30.3
Q ss_pred cchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhh
Q 009484 439 DLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKL 487 (533)
Q Consensus 439 dlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~~e~e~~l 487 (533)
|||-.++..|.+-.++++ ++..||=+++++|.|.+-||.++
T Consensus 117 eLe~~i~~lk~~V~~q~~--------~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQ--------RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666554 46678888999999999888876
No 80
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.64 E-value=76 Score=34.78 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=30.4
Q ss_pred hhhhcccchhhhHHhhhhhHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Q 009484 433 LMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480 (533)
Q Consensus 433 l~tkvkdlevelett~~~~ke~lqqavl~erer~tq~qwdmeelr~~~ 480 (533)
|..++-.|+.++++.. +...+||..|-.-|.-|-++-=|++-=+|.|
T Consensus 115 LRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666667776666 5556777777766776666666665555555
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.64 E-value=75 Score=28.55 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHhhccc----HH---HHHHHhhhhHHHHHHhhhhcccchhhhHHhhhhhHH
Q 009484 398 LSRVLLTMERRLVTAKTD----ME---DLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE 453 (533)
Q Consensus 398 l~rvl~t~~~rl~taktd----me---dliarlnqe~avk~~l~tkvkdlevelett~~~~ke 453 (533)
-|+.+.|++-=|..-|+- ++ +=|..||| |++|.+.|+|..|..+.+
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq----------~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNH----------KLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhchh
Confidence 467777777777766665 33 34667776 789999999988876543
No 82
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.81 E-value=2.1e+02 Score=30.80 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=65.1
Q ss_pred CCceEEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhHHHHHHhhhhcccchhhhHHhh-------hhhHHHHH
Q 009484 384 GDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK-------QKSKETLQ 456 (533)
Q Consensus 384 ~d~~~~lp~d~r~kl~rvl~t~~~rl~taktdmedliarlnqe~avk~~l~tkvkdlevelett~-------~~~ke~lq 456 (533)
.+..+.-|.- =-|.-.|.+.|+=.-+.=-+||+++..|.|-+.--.-|.+.+||.-.+-+.++ ++++..|+
T Consensus 70 ~~fG~yCPTt--Cglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle 147 (461)
T 3ghg_B 70 PDLGVLCPTG--CQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELE 147 (461)
T ss_dssp TTTCBCEECH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cccCCcCCCc--chHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHH
Confidence 4445555542 23455566666554444455666777776655555555556666555544333 34555666
Q ss_pred HHHHHHhhhh--------hhhhcchHHHHHHHHHHHHhhhhcccc
Q 009484 457 QAILSERERL--------TQMQWDMEELRQKSLEMEWKLKSKQCC 493 (533)
Q Consensus 457 qavl~erer~--------tq~qwdmeelr~~~~e~e~~lks~~~~ 493 (533)
+-..-|+|.+ -++|=-++.+|+|.+.+|..+...++.
T Consensus 148 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 148 KHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6666666443 356777889999999999888866443
Done!