BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009485
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/515 (45%), Positives = 322/515 (62%), Gaps = 21/515 (4%)
Query: 29 QRTFLYCLSFN-ANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPL 87
+ FL C S + NN++ P YT + + + SIL S+ QNLR++ + PKP I TP
Sbjct: 4 RENFLKCFSKHIPNNVANPK--LVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61
Query: 88 YESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNT 147
SH+QA ++CSK++G+ +R RSGGHD EG+SY S++ PF+VVDL + S+ +D++ T
Sbjct: 62 NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQT 119
Query: 148 AWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLD 207
AWV+AGAT+GE+YY I EK+ FP G C ++ ++MR YG+ ADN++D
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 208 ARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE- 266
A +V+ G+VLDR +MGEDLFWAIRGGGG +FGII AWK+KL K +E
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 267 QGATNILYKWQQVADKLDEDL-----FIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRL 321
G + KWQ +A K D+DL FI I + K TV ++++F G D L
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKT--TVHGYFSSIFHGGVDSL 297
Query: 322 LQVMQKSFPELGLSRQDCIETSWIKSVIYIAGF----PSNSTPEFLLQGKAMPKAYFKAK 377
+ +M KSFPELG+ + DC E SWI + I+ +G +N E LL A K F K
Sbjct: 298 VDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIK 357
Query: 378 SDFVRTPIPTKALGGLWRRFLAED--GPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQ 435
D+V+ PIP A+ + + ED + + PYGG+M +I E+AIPFPHR G ++++
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417
Query: 436 YVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNA-SFNQA 494
Y W E ++ KH+NW+R++YN+ PYVS+ PR AY+NYRDLDLG N + ++ QA
Sbjct: 418 YTASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQA 476
Query: 495 RIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529
RIWG KYF NF RLV+VKTKVDP NFFR+EQSIP
Sbjct: 477 RIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 511
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/507 (43%), Positives = 313/507 (61%), Gaps = 20/507 (3%)
Query: 28 VQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPL 87
V+R FL CL+ + Y ++ +++S+ S+ +N+++L KP +I TP
Sbjct: 9 VERDFLTCLTKDI------PPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPT 62
Query: 88 YESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNT 147
SH+QAAV+C +R G+ +RVRSGGHDYEGLSY SE PF VVD+ ++R+V++D T
Sbjct: 63 NASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAAT 122
Query: 148 AWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLD 207
AWV +GA +G+LYY I + S GFPAG+CT++ ++RKYG ADNV+D
Sbjct: 123 AWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVID 182
Query: 208 ARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLEQ 267
A++VDA+GR+LDR AMGED FWAIRGGGG SFGI+ +W+VKL K +++
Sbjct: 183 AKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKE 242
Query: 268 GATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQK 327
GA +++ KWQ VA L +DL IR++ G A + AL+LG L+ +M
Sbjct: 243 GAIDLVTKWQTVAPALPDDLMIRIMAMGQGAM----------FEALYLGTCKDLVLLMTA 292
Query: 328 SFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPT 387
FPELG++ C E +WI+SV YI P + + L + + KA+ K KSD+V PIP
Sbjct: 293 RFPELGMNATHCKEMTWIESVPYIPMGPKGTVRDLLNRTSNI-KAFGKYKSDYVLEPIPK 351
Query: 388 KALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQ 447
++ + +MI +PYGG ++ +PE+A PFP R G LF IQYV W GE +
Sbjct: 352 SDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWF-GEGAA 410
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCN--ASFNQARIWGVKYFKNN 505
W R++Y++M PYVS+ PR AYVNYRDLDLG+N +++ ++WG KYFK N
Sbjct: 411 ALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGN 470
Query: 506 FYRLVRVKTKVDPGNFFRHEQSIPTSL 532
F RL R K K+DP ++FR+EQSIP L
Sbjct: 471 FERLARTKGKIDPEDYFRNEQSIPPLL 497
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/482 (43%), Positives = 296/482 (61%), Gaps = 14/482 (2%)
Query: 51 FYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRS 110
Y ++ ++ S+L + +N R+ P KP +I TP SH+Q+AV+C +R + +RVRS
Sbjct: 24 LYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRS 83
Query: 111 GGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIH 170
GGHDYEGLSY S F VVDL ++R+V VD TAWV +GA +GELYY IY+ S
Sbjct: 84 GGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTL 143
Query: 171 GFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWA 230
FPAG+C ++ ++RKYGI A+NV+D ++VDA G++ D+ +MG+D FWA
Sbjct: 144 AFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWA 203
Query: 231 IRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATNILYKWQQVADKLDEDLFIR 290
+RGGGG SFGI++AW+VKL SKT+ +GA +I+ KWQ VA +L DL IR
Sbjct: 204 VRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIR 263
Query: 291 VLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIY 350
++ QG A ++ A++LG L +M FPELG++ C E SWI+S+ +
Sbjct: 264 IIAQGPKA----------TFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPF 313
Query: 351 IAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGP-LMIWNP 409
+ ++ + LL + K + + KSD+V P P + +L + G +MI++P
Sbjct: 314 VHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDP 373
Query: 410 YGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFP 469
YG +S PE+A PFPHRKG LF IQYV W + ++W +++YNYM PYVS+ P
Sbjct: 374 YGATISATPESATPFPHRKGVLFNIQYVNYWF-APGAAAAPLSWSKDIYNYMEPYVSKNP 432
Query: 470 RAAYVNYRDLDLGMNNKCN--ASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQS 527
R AY NYRD+DLG N N +++ ++WG KYFK NF RL K KVDP ++FR+EQS
Sbjct: 433 RQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQS 492
Query: 528 IP 529
IP
Sbjct: 493 IP 494
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 348 bits (893), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 205/525 (39%), Positives = 286/525 (54%), Gaps = 28/525 (5%)
Query: 14 SVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYL 73
S+FL +C + L CL+FN + T F + F+ L S QN +
Sbjct: 12 SIFLSLLNCAEA---GNDLLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQ 64
Query: 74 QPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDL 133
+ KP I P + + + C ++ +R+RSGGH YEGLSY S+ TPFI++DL
Sbjct: 65 NSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDL 122
Query: 134 ARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXS 193
L V++D+ TAWV++G+T+GELYY I E S+ GF AG C ++
Sbjct: 123 MNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGM 182
Query: 194 MMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXX 253
M RKYG+ ADNV+DA ++DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL
Sbjct: 183 MSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 242
Query: 254 XXXXXXXXSKTLE-QGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNA 312
+K + AT++L+KWQ VA++L+ED + VL G A ++V T+
Sbjct: 243 EKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----G 296
Query: 313 LFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMP 370
G+ FPELGL +D +E SW +S Y+AG + S FL
Sbjct: 297 FHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFD 352
Query: 371 KAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGT 430
+ FK K D + P+P+KA GL R E + N +GG MSKI + PFPHR GT
Sbjct: 353 ERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGT 412
Query: 431 LFKIQYVTLWLDGE-KSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK 486
++Y+ W E K + + ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK
Sbjct: 413 RLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNK 472
Query: 487 --CNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529
N + +R WG YF +N+ RL+R KT +DP N F H QSIP
Sbjct: 473 TVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 279/507 (55%), Gaps = 25/507 (4%)
Query: 32 FLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESH 91
L CL+FN + T F + F+ L S QN + + KP I P +
Sbjct: 8 LLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 92 VQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQ 151
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L V++D+ TAWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 121
Query: 152 AGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIV 211
+G+T+GELYY I E S+ GF AG C ++ M RKYG+ ADNV+DA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 212 DARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 270
DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL +K + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 271 NILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFP 330
++L+KWQ VA++L+ED + VL G A ++V T+ G+ FP
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----GFHFGLKTVAKSTFDLLFP 295
Query: 331 ELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYFKAKSDFVRTPIPTK 388
ELGL +D +E SW +S Y+AG + S FL + FK K D + P+P+K
Sbjct: 296 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDLTKEPLPSK 351
Query: 389 ALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGE-KSQ 447
A GL R E + N +GG MSKI + PFPHR GT ++Y+ W E K +
Sbjct: 352 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 411
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK--CNASFNQARIWGVKYF 502
+ ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK N + +R WG YF
Sbjct: 412 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 471
Query: 503 KNNFYRLVRVKTKVDPGNFFRHEQSIP 529
+N+ RL+R KT +DP N F H QSIP
Sbjct: 472 LSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 279/507 (55%), Gaps = 25/507 (4%)
Query: 32 FLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESH 91
L CL+FN + T F + F+ L S QN + + KP I P +
Sbjct: 8 LLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 92 VQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQ 151
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L V++D+ TAWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 121
Query: 152 AGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIV 211
+G+T+GELYY I E S+ GF AG C ++ M RKYG+ ADNV+DA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 212 DARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 270
DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL +K + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 271 NILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFP 330
++L+KWQ VA++L+ED + VL G A ++V T+ G+ FP
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----GFHFGLKTVAKSTFDLLFP 295
Query: 331 ELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYFKAKSDFVRTPIPTK 388
ELGL +D +E SW +S Y+AG + S FL + FK K D + P+P+K
Sbjct: 296 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDLTKEPLPSK 351
Query: 389 ALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGE-KSQ 447
A GL R E + N +GG MSKI + PFPHR GT ++Y+ W E K +
Sbjct: 352 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 411
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK--CNASFNQARIWGVKYF 502
+ ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK N + +R WG YF
Sbjct: 412 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 471
Query: 503 KNNFYRLVRVKTKVDPGNFFRHEQSIP 529
+N+ RL+R KT +DP N F H QSIP
Sbjct: 472 LSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 279/507 (55%), Gaps = 25/507 (4%)
Query: 32 FLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESH 91
L CL+FN + T F + F+ L S QN + + KP I P +
Sbjct: 2 LLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 92 VQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQ 151
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L V++D+ TAWV+
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 115
Query: 152 AGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIV 211
+G+T+GELYY I E S+ GF AG C ++ M RKYG+ ADNV+DA ++
Sbjct: 116 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 175
Query: 212 DARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 270
DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL +K + AT
Sbjct: 176 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 235
Query: 271 NILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFP 330
++L+KWQ VA++L+ED + VL G A ++V T+ G+ FP
Sbjct: 236 SLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----GFHFGLKTVAKSTFDLLFP 289
Query: 331 ELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYFKAKSDFVRTPIPTK 388
ELGL +D +E SW +S Y+AG + S FL + FK K D + P+P+K
Sbjct: 290 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDLTKEPLPSK 345
Query: 389 ALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGE-KSQ 447
A GL R E + N +GG MSKI + PFPHR GT ++Y+ W E K +
Sbjct: 346 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK--CNASFNQARIWGVKYF 502
+ ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK N + +R WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 503 KNNFYRLVRVKTKVDPGNFFRHEQSIP 529
+N+ RL+R KT +DP N F H QSIP
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 342 bits (878), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/507 (39%), Positives = 278/507 (54%), Gaps = 25/507 (4%)
Query: 32 FLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESH 91
L CL+FN + T F + F+ L S QN + + KP I P +
Sbjct: 2 LLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 92 VQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQ 151
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L V++D+ TAWV+
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 115
Query: 152 AGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIV 211
+G+T+GELYY I E S+ GF AG ++ M RKYG+ ADNV+DA ++
Sbjct: 116 SGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 175
Query: 212 DARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 270
DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL +K + AT
Sbjct: 176 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 235
Query: 271 NILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFP 330
++L+KWQ VA++L+ED + VL G A ++V T+ G+ FP
Sbjct: 236 SLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----GFHFGLKTVAKSTFDLLFP 289
Query: 331 ELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYFKAKSDFVRTPIPTK 388
ELGL +D +E SW +S Y+AG + S FL + FK K D + P+P+K
Sbjct: 290 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDLTKEPLPSK 345
Query: 389 ALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGE-KSQ 447
A GL R E + N +GG MSKI + PFPHR GT ++Y+ W E K +
Sbjct: 346 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK--CNASFNQARIWGVKYF 502
+ ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK N + +R WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 503 KNNFYRLVRVKTKVDPGNFFRHEQSIP 529
+N+ RL+R KT +DP N F H QSIP
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 342 bits (877), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/507 (39%), Positives = 278/507 (54%), Gaps = 25/507 (4%)
Query: 32 FLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESH 91
L CL+FN + T F + F+ L S QN + + KP I P +
Sbjct: 2 LLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 92 VQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQ 151
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L V++D+ TAWV+
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 115
Query: 152 AGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIV 211
+G+T+GELYY I E S+ GF AG ++ M RKYG+ ADNV+DA ++
Sbjct: 116 SGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 175
Query: 212 DARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 270
DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL +K + AT
Sbjct: 176 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 235
Query: 271 NILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFP 330
++L+KWQ VA++L+ED + VL G A ++V T+ G+ FP
Sbjct: 236 SLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----GFHFGLKTVAKSTFDLLFP 289
Query: 331 ELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYFKAKSDFVRTPIPTK 388
ELGL +D +E SW +S Y+AG + S FL + FK K D + P+P+K
Sbjct: 290 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDLTKEPLPSK 345
Query: 389 ALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGE-KSQ 447
A GL R E + N +GG MSKI + PFPHR GT ++Y+ W E K +
Sbjct: 346 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK--CNASFNQARIWGVKYF 502
+ ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK N + +R WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 503 KNNFYRLVRVKTKVDPGNFFRHEQSIP 529
+N+ RL+R KT +DP N F H QSIP
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 342 bits (877), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/507 (39%), Positives = 278/507 (54%), Gaps = 25/507 (4%)
Query: 32 FLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESH 91
L CL+FN + T F + F+ L S QN + + KP I P +
Sbjct: 5 LLSCLTFNG----VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 60
Query: 92 VQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQ 151
+ + C ++ +R+RSGG YEGLSY S+ TPFI++DL L V++D+ TAWV+
Sbjct: 61 LSNTIRCIRKGSWTIRLRSGGASYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 118
Query: 152 AGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIV 211
+G+T+GELYY I E S+ GF AG C ++ M RKYG+ ADNV+DA ++
Sbjct: 119 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 178
Query: 212 DARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 270
DA G +LDR AMGED+FWAIRGGGG +G I AWK+KL +K + AT
Sbjct: 179 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 238
Query: 271 NILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFP 330
++L+KWQ VA++L+ED + VL G A ++V T+ G+ FP
Sbjct: 239 SLLHKWQFVAEELEEDFTLSVL--GGADEKQVWLTML----GFHFGLKTVAKSTFDLLFP 292
Query: 331 ELGLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYFKAKSDFVRTPIPTK 388
ELGL +D +E SW +S Y+AG + S FL + FK K D + P+P+K
Sbjct: 293 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL----KFDERAFKTKVDLTKEPLPSK 348
Query: 389 ALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGE-KSQ 447
A GL R E + N +GG MSKI + PFPHR GT ++Y+ W E K +
Sbjct: 349 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 408
Query: 448 NKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG---MNNK--CNASFNQARIWGVKYF 502
+ ++W+ +Y +M P+VS+ PR YVN+ DLDLG NK N + +R WG YF
Sbjct: 409 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 468
Query: 503 KNNFYRLVRVKTKVDPGNFFRHEQSIP 529
+N+ RL+R KT +DP N F H QSIP
Sbjct: 469 LSNYERLIRAKTLIDPNNVFNHPQSIP 495
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 121/485 (24%), Positives = 206/485 (42%), Gaps = 57/485 (11%)
Query: 79 KPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFI--VVDLARL 136
+P+ ++ V AV + G + VRSGGH +EG ++ P + V+D++++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF-----VDDPAVRAVIDMSQM 109
Query: 137 RSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMR 196
R V D + V+ GAT+GE Y +Y + PAG+C + + R
Sbjct: 110 RQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYGPLSR 168
Query: 197 KYGIGADNV--LDARIVDARGRVLDRAAMG------EDLFWAIRGGGGASFGIILAWKVK 248
+ G+ AD++ ++ +VDA GR A +L+WA GGGG +FGI+ +
Sbjct: 169 RDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIV----TR 224
Query: 249 LXXXXXXXXXXXXSKTLEQGATNIL---YKWQQVADKLDEDLFIRVLIQGSAAAQKVNRT 305
S+ L + T+ L W A L E+ F R+ I A + N
Sbjct: 225 YWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRI-IDNHGAWHQSNSA 281
Query: 306 VTTSY---NALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFP---SNST 359
T Y +++F + Q++ + GL + + ++ +V G ST
Sbjct: 282 AGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRST 341
Query: 360 PEFL---LQGKAMPKAYFKAKSD--FVRTPIPTKALGGLWRRFLAEDGPLMIWNP----- 409
+L L K + + KS ++R P L+R A+ +W
Sbjct: 342 EPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADS---QVWGEVSLYS 398
Query: 410 YGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFP 469
YGG ++ +PE A R ++ K+ W+D + ++ WIR +Y + P
Sbjct: 399 YGGKVNSVPETATATAQRD-SIIKVWMSATWMD-PAHDDANLAWIREIYREIFATTGGVP 456
Query: 470 ------RAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFR 523
++NY D+DL ++ + N S W Y+K N+ RL +VK + DP + FR
Sbjct: 457 VPDDRTEGTFINYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQKVKARWDPRDVFR 512
Query: 524 HEQSI 528
H S+
Sbjct: 513 HALSV 517
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 206/483 (42%), Gaps = 51/483 (10%)
Query: 79 KPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS 138
+P++I V AV + R G + VRSGGH +E +++ +++D++ L
Sbjct: 57 EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVK---VIIDMSLLTE 113
Query: 139 VNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKY 198
+ D + N ++ G T+ E+Y ++Y N+ P G+C + + R++
Sbjct: 114 IAYDPSMNAFLIEPGNTLSEVYEKLYLGWNVT-IPGGVCGGVGVGGHICGGGYGPLSRQF 172
Query: 199 GIGADNVLDARIV----DARGRVL----DRAAMGEDLFWAIRGGGGASFGIILAWKVKLX 250
G D + +V + RV+ +R DL+WA GGGG +FG++ + +++
Sbjct: 173 GSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVP 232
Query: 251 XXXXXXXXXXXSKTLEQGATN-ILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTS 309
K T+ + + W + E F R L++ + N +
Sbjct: 233 EDVGRNPERLLPKPPATLLTSTVTFDWA----GMTEAAFSR-LLRNHGEWYERNSGPDSP 287
Query: 310 YNALF--LGVADRLLQVMQKSF--P-ELGLSRQDC--IETSWIKSVIYIAGFPSNSTPEF 362
Y L+ L + + + + + F P ++ +R D + + I++V I G P PE
Sbjct: 288 YTGLWSQLMIGNEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAV--IDGVPPAEVPEP 345
Query: 363 LLQ-------GKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPL--MIW-NPYGG 412
+ Q G+ K K+ ++R + + + ++ DG +W YGG
Sbjct: 346 IEQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGG 405
Query: 413 MMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYM------APYVS 466
++ + A P R L K+ Y+T W + ++ KH+ W+R LY + P +
Sbjct: 406 KVNTVDPAATALPQRDAIL-KVNYITGWAN-PGNEAKHLTWVRKLYADVYAETGGVPVPN 463
Query: 467 RFPRAAYVNYRDLDLGMNNKCNASFNQARI-WGVKYFKNNFYRLVRVKTKVDPGNFFRHE 525
AY+NY D DL + N + + W Y+K N RL +VK DP N F H
Sbjct: 464 DVSDGAYINYPDSDL-----ADPGLNTSGVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHA 518
Query: 526 QSI 528
SI
Sbjct: 519 LSI 521
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 116/503 (23%), Positives = 203/503 (40%), Gaps = 60/503 (11%)
Query: 62 ILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYA 121
I S + N R+ V +PE F P V A++ + G + RSGGH +
Sbjct: 21 IELSHSDNHRF----VVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDF--- 73
Query: 122 SEIETPF--IVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTS 179
+ TP +V+DL L ++ + V +GATV ++ ++ + N P G C++
Sbjct: 74 --VGTPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSA 130
Query: 180 LXXXXXXXXXXXXSMMRKYGIGADNV--LDARIVDAR-------GRVLDRAAMGEDLFWA 230
+ + R+ G+ D++ ++ +VD R D +GE LFWA
Sbjct: 131 VGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWA 189
Query: 231 IRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATNILYKWQQVADKLDEDLFIR 290
GGGG +FG++ A++ + +++ W + DE F+
Sbjct: 190 HTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI----DETSFVT 245
Query: 291 VL---IQGSAAAQKVNRTVTTSYNALFLG-VADRLLQVMQKSFPELGLSRQDCIETSWIK 346
V+ + + ++ + F+ V+ +LQ+M + + + + I ++
Sbjct: 246 VMRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQ--DADVDPEGEILARFVA 303
Query: 347 SVIY---IAGFPSNSTPEFLLQGKAMPK--------AYFKAKSDFVRTPIPTKALGGLWR 395
S+ + G P +L + M + A +KS + R PT +
Sbjct: 304 SLTEGTGVVGIPRGGVMSWLTGTRYMSQADCGDVMGARSASKSAYHRA-APTDEQLSVLH 362
Query: 396 RFLAEDGP----LMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHM 451
R L D P +++N YGG +++ + P R ++ K + + W D E + H+
Sbjct: 363 RHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDAELDE-LHL 420
Query: 452 NWIRNLYN------YMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNN 505
W+R LY P Y+NY D DL ++ N S W Y+K+N
Sbjct: 421 GWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-LDPARNRS---GEPWHHLYYKDN 476
Query: 506 FYRLVRVKTKVDPGNFFRHEQSI 528
+ RL K DP N F H SI
Sbjct: 477 YARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 375 KAKSDFVRTPIPTKALGGLWRRFLAED----GPLMIWNPYGGMMSKIPENAIPFPHRKGT 430
K K+ + R + +G L+ R + D ++ YGG ++ +P + R +
Sbjct: 368 KIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRD-S 426
Query: 431 LFKIQYVTLWLDGEKSQNKHMNWIRNLYNYM------APYVSRFPRAAYVNYRDLDLGMN 484
+ KI YVT W D + H+ WIR LY + P AYVNY D+DL
Sbjct: 427 ILKIVYVTTWEDPAQDP-VHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDL--- 482
Query: 485 NKCNASFNQARI-WGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSI 528
+ +N + + W Y+K+ + RL VK + DP N FRH S+
Sbjct: 483 --ADEEWNTSGVPWSELYYKDAYPRLQAVKARWDPRNVFRHALSV 525
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 67 AQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIET 126
+NLR+ V PE I + ++ + + R G + VRSGGH YE S++
Sbjct: 50 GENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVR- 104
Query: 127 PFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXX 186
+V+D++RL +V D + V+AGAT+G +Y ++ + P G C +
Sbjct: 105 --VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT-LPGGACPDVGAGGHI 161
Query: 187 XXXXXXSMMRKYGIGAD--NVLDARIVDARGRVLDRAAMGE------DLFWA 230
+ R +G D + ++ +VDA G A E DL+WA
Sbjct: 162 LGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWA 213
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 118/516 (22%), Positives = 200/516 (38%), Gaps = 91/516 (17%)
Query: 40 ANNLSTPSSTYFYT--PNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVI 97
++ L+TP S P+ F +I ++ + R+LQ +P I L V +V
Sbjct: 3 SSKLATPLSIQGEVIYPDDSGFDAI--ANIWDGRHLQ----RPSLIARCLSAGDVAKSVR 56
Query: 98 CSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVG 157
+ G+ + VRSGGH+ G YA+ IV+DL + S+++D + A + G G
Sbjct: 57 YACDNGLEISVRSGGHNPNG--YATN--DGGIVLDLRLMNSIHIDTAGSRARIGGGVISG 112
Query: 158 ELYYRIYEKSNIHGFPA--GLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLDARIVDARG 215
+L +++ G A G+ + + KYG+ +DN+L A +V A G
Sbjct: 113 DLV----KEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATG 168
Query: 216 RVL-----DRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXS-----KTL 265
V+ +R +LFWA+R G G +FG++ +V+L + L
Sbjct: 169 DVIYCSDDERP----ELFWAVR-GAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSEL 223
Query: 266 EQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLG---VADRLL 322
T++L ++AD + +F+ V NR + + LG +A+R +
Sbjct: 224 AGLLTSLLDALNEMADHIYPSVFVGV---------DENRAPSVTVCVGHLGGLDIAERDI 274
Query: 323 QVMQKSFPELGLSRQDCIETSWIKSVI----YIAGFPSNSTPEFLLQGKAMPKAYFKAKS 378
++ LG + D I V+ + F + ++ + AMP A F
Sbjct: 275 ARLRG----LGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARF---- 326
Query: 379 DFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPF------PHRKGTLF 432
+A+ G +F++E P G K+ +PF P R
Sbjct: 327 --------AEAIAGNLDKFVSE--------PASGGSVKLEIEGMPFGNPKRTPARHRDAM 370
Query: 433 KIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFN 492
+ + W K+ P ++R AA + G N S
Sbjct: 371 GVLALAEWSGAAPGSEKY------------PELARELDAALLRAGVTTSGFGLLNNNSEV 418
Query: 493 QARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSI 528
A + Y + RL VK + DP N FRH +I
Sbjct: 419 TAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNI 454
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 101/463 (21%), Positives = 180/463 (38%), Gaps = 64/463 (13%)
Query: 90 SHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNT-- 147
+H+Q+AV C+K+L + + +SGGH Y + E ++V L R+ V + N T
Sbjct: 47 AHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGG--ENGHLMVQLDRMIDV-ISYNDKTGI 103
Query: 148 AWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLD 207
A V+ GA +G L + +K G C + +G+ D+V+
Sbjct: 104 AHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVG 162
Query: 208 ARIVDARGRVLDRAAM-GEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE 266
+V A GR+++ +A DLFW I+ G G++FGI+ WK+ K L
Sbjct: 163 VTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKL---------ATFPAPKVLT 212
Query: 267 QGATNILYKWQQVADKLDEDL--FIRVLIQGSAAAQKVNRTV------TTSYNALFLGVA 318
+ + +K + A K E + + R + A ++VN + L+ G
Sbjct: 213 RFGVTLNWKNKTSALKGIEAVEDYARWV-----APREVNFRIGDYGAGNPGIEGLYYGTP 267
Query: 319 DRLLQVMQKSFPEL--GLSRQDCIETSWIKSVIYIAGFPSNS--TPEFLLQGKAMPKAYF 374
++ Q L G +WI+SV+ + F TP+ + A
Sbjct: 268 EQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLK 327
Query: 375 KAKSDFVRT------PIPTKALGGLWRRFLAEDGPLMIWNPYGG---MMSKIPENAIPFP 425
K D V+ + K W L + +GG ++K+ +P
Sbjct: 328 SIKGDAVKNFVDYYFDVSNKVKDRFWFYQL---------DVHGGKNSQVTKVTNAETAYP 378
Query: 426 HRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNN 485
HR L+ IQ+ + + + ++ N + + + Y+NY D + +
Sbjct: 379 HRD-KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDY 437
Query: 486 KCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSI 528
Y+ N RL ++K K DP + F + Q++
Sbjct: 438 ATKV-----------YYGENLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/471 (21%), Positives = 172/471 (36%), Gaps = 69/471 (14%)
Query: 79 KPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS 138
P I P + AAV C G+ + + GGH Y + E ++++L R+
Sbjct: 42 DPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG--EDGHLMLELDRMYR 99
Query: 139 VNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKY 198
V+VD N N A +Q GA +G + ++ N G C ++ +
Sbjct: 100 VSVDDN-NVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFATHTH 157
Query: 199 GIGADNVLDARIVDARGRVLDRAAM-GEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXX 257
G+ D ++ A +V A ++ + DLFWA+RGGGG F I+ ++
Sbjct: 158 GLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIIT 216
Query: 258 XXXXSKTLEQ----GATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNAL 313
+ T + L W Q + + +L +R+ I +A + N
Sbjct: 217 TYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANALNWEGN---------- 264
Query: 314 FLGVADRLLQVMQKSFPELG--LSRQDCIETSWIKSV-IYIAGFPSNST------PEFLL 364
F G A L +++Q + G + +ET W + Y+ G N T F
Sbjct: 265 FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYA 324
Query: 365 QGKAMPKAYFKAKSDFVRTPIPTKAL---GGLWRRFLAEDGPLMIWNPYGG---MMSKIP 418
P+ +A FV ++ G W + W+ +GG ++ +
Sbjct: 325 NSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAVS 374
Query: 419 ENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFP-------RA 471
+ + HR L+ Q+ D E N + + + +M +V+ +
Sbjct: 375 NDETAYAHRD-QLWLWQFYDSIYDYE---NNTSPYPESGFEFMQGFVATIEDTLPEDRKG 430
Query: 472 AYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFF 522
Y NY D L Y++ N +L +K K DP + F
Sbjct: 431 KYFNYADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDPEDVF 470
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/471 (20%), Positives = 171/471 (36%), Gaps = 69/471 (14%)
Query: 79 KPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS 138
P I P + AAV C G+ + + GGH Y + E ++++L R+
Sbjct: 42 DPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG--EDGHLMLELDRMYR 99
Query: 139 VNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKY 198
V+VD N N A +Q GA +G + ++ N G ++ +
Sbjct: 100 VSVDDN-NVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFATHTH 157
Query: 199 GIGADNVLDARIVDARGRVLDRAAM-GEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXX 257
G+ D ++ A +V A ++ + DLFWA+RGGGG F I+ ++
Sbjct: 158 GLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIIT 216
Query: 258 XXXXSKTLEQ----GATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNAL 313
+ T + L W Q + + +L +R+ I +A + N
Sbjct: 217 TYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANALNWEGN---------- 264
Query: 314 FLGVADRLLQVMQKSFPELG--LSRQDCIETSWIKSV-IYIAGFPSNST------PEFLL 364
F G A L +++Q + G + +ET W + Y+ G N T F
Sbjct: 265 FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYA 324
Query: 365 QGKAMPKAYFKAKSDFVRTPIPTKAL---GGLWRRFLAEDGPLMIWNPYGG---MMSKIP 418
P+ +A FV ++ G W + W+ +GG ++ +
Sbjct: 325 NSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAVS 374
Query: 419 ENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFP-------RA 471
+ + HR L+ Q+ D E N + + + +M +V+ +
Sbjct: 375 NDETAYAHRD-QLWLWQFYDSIYDYE---NNTSPYPESGFEFMQGFVATIEDTLPEDRKG 430
Query: 472 AYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFF 522
Y NY D L Y++ N +L +K K DP + F
Sbjct: 431 KYFNYADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDPEDVF 470
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 129 IVVDLARLRSV-NVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXX 187
+V+ L R + +D + NT V+AGA + + + E + G S
Sbjct: 98 VVISLKRXDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLS 157
Query: 188 XXXXXSMMRKYGIGADNVLDARIVDARGRV------LDRAAMGEDLFWAIRGGGGASFGI 241
+ YG+ D L +V A GRV L + G DL G G + GI
Sbjct: 158 TNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-TLGI 216
Query: 242 ILAWKVKL 249
I A +KL
Sbjct: 217 ITAATLKL 224
>pdb|2P3X|A Chain A, Crystal Structure Of Grenache (Vitis Vinifera) Polyphenol
Oxidase
Length = 339
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 21/88 (23%)
Query: 264 TLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGV---ADR 320
TLE NI++KW +ADK ED+ T + +F G DR
Sbjct: 233 TLEHAPHNIVHKWTGLADKPSEDM---------------GNFYTAGRDPIFFGHHANVDR 277
Query: 321 LLQVMQKSFPELGLSRQDCIETSWIKSV 348
+ + + G +R+D +T W+ +
Sbjct: 278 MWNIWKTIG---GKNRKDFTDTDWLDAT 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,365,365
Number of Sequences: 62578
Number of extensions: 616264
Number of successful extensions: 1259
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 29
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)