Query 009485
Match_columns 533
No_of_seqs 267 out of 2331
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 13:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 3.9E-39 8.4E-44 343.1 42.1 189 70-265 55-254 (525)
2 PLN02805 D-lactate dehydrogena 100.0 5.9E-34 1.3E-38 307.8 34.2 190 78-273 132-328 (555)
3 TIGR01678 FAD_lactone_ox sugar 100.0 3.6E-33 7.7E-38 295.3 34.7 197 71-281 6-205 (438)
4 PRK11230 glycolate oxidase sub 100.0 5.1E-33 1.1E-37 299.0 33.1 189 76-268 52-246 (499)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.4E-32 3E-37 295.6 30.8 185 76-265 28-219 (459)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 1.4E-31 3.1E-36 282.8 32.1 195 71-281 3-199 (419)
7 TIGR01676 GLDHase galactonolac 100.0 5.2E-32 1.1E-36 288.2 22.9 196 71-280 53-251 (541)
8 TIGR01677 pln_FAD_oxido plant- 100.0 9.7E-31 2.1E-35 282.2 23.5 182 71-256 23-215 (557)
9 KOG1231 Proteins containing th 100.0 6E-30 1.3E-34 257.3 26.3 231 5-254 2-240 (505)
10 TIGR00387 glcD glycolate oxida 100.0 3.5E-30 7.7E-35 272.4 19.5 187 83-273 1-194 (413)
11 PRK11282 glcE glycolate oxidas 100.0 1.9E-29 4.2E-34 258.1 19.6 170 88-264 3-181 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 3E-28 6.6E-33 261.4 24.5 196 71-280 88-286 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 1.1E-26 2.4E-31 209.1 12.9 136 80-219 1-137 (139)
14 PRK11183 D-lactate dehydrogena 99.9 3.7E-24 8E-29 224.8 18.5 194 77-274 36-287 (564)
15 PRK13905 murB UDP-N-acetylenol 99.9 1.4E-24 3.1E-29 219.5 12.7 164 76-253 27-193 (298)
16 KOG1233 Alkyl-dihydroxyacetone 99.9 2.5E-22 5.3E-27 198.0 16.6 232 26-264 113-351 (613)
17 KOG1232 Proteins containing th 99.9 5.2E-23 1.1E-27 202.5 11.5 187 67-257 77-270 (511)
18 KOG4730 D-arabinono-1, 4-lacto 99.9 4.1E-22 8.9E-27 201.0 14.9 183 72-262 42-227 (518)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 3.4E-22 7.3E-27 202.0 13.2 163 76-252 33-197 (305)
20 PRK14652 UDP-N-acetylenolpyruv 99.9 5.4E-22 1.2E-26 200.1 13.7 163 76-253 32-196 (302)
21 TIGR00179 murB UDP-N-acetyleno 99.9 6.1E-22 1.3E-26 198.4 12.8 163 76-251 9-174 (284)
22 PRK13906 murB UDP-N-acetylenol 99.9 1.1E-21 2.3E-26 198.3 13.2 161 77-251 34-196 (307)
23 PRK13903 murB UDP-N-acetylenol 99.9 5.4E-21 1.2E-25 196.1 15.1 165 76-253 29-197 (363)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 5.7E-19 1.2E-23 177.7 15.7 165 76-252 17-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 3.8E-18 8.2E-23 171.1 13.0 161 76-252 30-193 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 2E-17 4.3E-22 162.8 14.2 166 75-252 16-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 5.3E-17 1.1E-21 162.4 12.4 164 76-253 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 9.1E-17 2E-21 163.0 11.4 163 76-252 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 4.2E-16 9.2E-21 157.9 13.0 165 76-252 26-236 (354)
30 PF08031 BBE: Berberine and be 99.7 3E-17 6.4E-22 118.3 2.7 47 472-529 1-47 (47)
31 PRK14651 UDP-N-acetylenolpyruv 99.5 3.6E-14 7.8E-19 140.1 11.3 150 78-252 19-170 (273)
32 KOG1262 FAD-binding protein DI 99.4 2.4E-13 5.3E-18 135.1 7.4 125 130-256 105-232 (543)
33 PRK13904 murB UDP-N-acetylenol 99.3 1E-11 2.2E-16 121.6 9.8 144 77-253 16-160 (257)
34 TIGR02963 xanthine_xdhA xanthi 95.8 0.079 1.7E-06 57.3 11.7 151 80-248 192-357 (467)
35 PF00941 FAD_binding_5: FAD bi 95.3 0.055 1.2E-06 50.3 7.2 78 80-162 2-80 (171)
36 TIGR03312 Se_sel_red_FAD proba 95.0 0.078 1.7E-06 52.7 7.7 139 83-248 4-154 (257)
37 PRK09799 putative oxidoreducta 94.7 0.11 2.3E-06 51.7 7.8 140 82-248 4-155 (258)
38 PRK09971 xanthine dehydrogenas 94.5 0.12 2.5E-06 52.4 7.7 152 82-251 6-175 (291)
39 PF09265 Cytokin-bind: Cytokin 93.9 0.027 5.8E-07 56.2 1.5 34 494-528 247-280 (281)
40 TIGR03195 4hydrxCoA_B 4-hydrox 90.0 0.78 1.7E-05 47.0 6.8 101 82-188 6-116 (321)
41 PLN00107 FAD-dependent oxidore 89.4 1 2.2E-05 44.2 6.7 27 497-525 171-197 (257)
42 COG4630 XdhA Xanthine dehydrog 89.2 1.2 2.6E-05 45.7 7.2 140 80-232 203-352 (493)
43 PF02913 FAD-oxidase_C: FAD li 88.1 0.91 2E-05 44.0 5.6 65 443-523 179-244 (248)
44 TIGR03199 pucC xanthine dehydr 88.0 1.1 2.5E-05 44.6 6.2 98 86-189 1-109 (264)
45 PLN02906 xanthine dehydrogenas 84.0 2.1 4.6E-05 52.3 6.8 79 81-165 229-309 (1319)
46 PF04030 ALO: D-arabinono-1,4- 82.9 2.2 4.9E-05 42.2 5.5 28 496-525 227-254 (259)
47 PLN00192 aldehyde oxidase 79.5 4.6 9.9E-05 49.5 7.5 107 80-189 233-352 (1344)
48 TIGR02969 mam_aldehyde_ox alde 78.8 6.3 0.00014 48.3 8.4 79 81-164 237-316 (1330)
49 TIGR00387 glcD glycolate oxida 76.5 3 6.6E-05 44.4 4.3 28 496-523 382-410 (413)
50 COG1319 CoxM Aerobic-type carb 72.4 11 0.00024 37.9 6.9 77 80-161 3-81 (284)
51 TIGR01677 pln_FAD_oxido plant- 65.3 9.9 0.00021 42.1 5.3 29 496-526 476-504 (557)
52 PF03614 Flag1_repress: Repres 51.7 46 0.001 29.9 6.0 37 82-118 8-45 (165)
53 COG4981 Enoyl reductase domain 51.4 40 0.00086 36.7 6.6 70 31-109 112-182 (717)
54 PF02601 Exonuc_VII_L: Exonucl 47.3 26 0.00057 35.7 4.6 57 50-113 19-87 (319)
55 KOG4730 D-arabinono-1, 4-lacto 46.5 10 0.00022 40.2 1.4 21 504-524 485-505 (518)
56 COG0351 ThiD Hydroxymethylpyri 41.3 88 0.0019 31.1 6.9 108 26-167 115-225 (263)
57 PRK00286 xseA exodeoxyribonucl 39.1 33 0.00071 36.8 4.0 56 51-113 141-204 (438)
58 PRK11282 glcE glycolate oxidas 39.0 18 0.00038 37.7 1.8 18 506-523 327-344 (352)
59 KOG3282 Uncharacterized conser 38.9 40 0.00086 31.4 3.8 36 70-107 117-152 (190)
60 PRK04322 peptidyl-tRNA hydrola 32.3 82 0.0018 27.1 4.5 41 72-114 42-83 (113)
61 COG1519 KdtA 3-deoxy-D-manno-o 32.1 2.8E+02 0.0061 29.5 9.2 34 79-112 260-293 (419)
62 cd07033 TPP_PYR_DXS_TK_like Py 26.1 96 0.0021 28.0 4.2 29 81-109 125-153 (156)
63 TIGR00237 xseA exodeoxyribonuc 25.9 46 0.00099 35.7 2.3 57 50-113 134-199 (432)
64 COG1570 XseA Exonuclease VII, 25.8 42 0.00091 35.8 1.9 57 50-113 140-205 (440)
65 COG4359 Uncharacterized conser 24.6 81 0.0018 29.7 3.3 24 93-116 79-102 (220)
66 PLN02465 L-galactono-1,4-lacto 24.3 48 0.001 36.9 2.2 28 495-525 537-564 (573)
67 cd02429 PTH2_like Peptidyl-tRN 24.1 1.5E+02 0.0033 25.6 4.7 31 79-109 55-85 (116)
68 PF02779 Transket_pyr: Transke 23.2 1.2E+02 0.0027 27.9 4.4 32 81-112 139-172 (178)
69 TIGR01676 GLDHase galactonolac 23.2 44 0.00096 36.9 1.6 26 497-525 509-534 (541)
70 cd02407 PTH2_family Peptidyl-t 23.0 1.4E+02 0.003 25.8 4.3 42 71-114 43-85 (115)
71 PF12108 SF3a60_bindingd: Spli 22.6 42 0.0009 21.3 0.7 12 504-515 11-22 (28)
72 KOG2499 Beta-N-acetylhexosamin 22.1 76 0.0016 34.2 3.0 29 87-115 247-277 (542)
73 PF13956 Ibs_toxin: Toxin Ibs, 22.1 53 0.0012 18.5 1.0 9 15-23 9-17 (19)
74 PF12273 RCR: Chitin synthesis 22.0 59 0.0013 28.5 1.9 15 4-18 5-19 (130)
75 cd06568 GH20_SpHex_like A subg 21.2 90 0.002 32.1 3.3 28 87-114 72-101 (329)
76 cd02430 PTH2 Peptidyl-tRNA hyd 21.0 1.5E+02 0.0033 25.5 4.2 41 71-113 43-84 (115)
77 cd02742 GH20_hexosaminidase Be 20.7 95 0.0021 31.5 3.4 29 86-114 68-98 (303)
78 PF01981 PTH2: Peptidyl-tRNA h 20.3 2.1E+02 0.0045 24.5 4.9 42 72-115 45-87 (116)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=3.9e-39 Score=343.08 Aligned_cols=189 Identities=22% Similarity=0.277 Sum_probs=168.7
Q ss_pred cccCCCCCCCccEEEecCCHHHHHHHHHHHH--hcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc------E-E
Q 009485 70 LRYLQPSVPKPEFIFTPLYESHVQAAVICSK--RLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS------V-N 140 (533)
Q Consensus 70 ~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~------i-~ 140 (533)
..|.......|.+|++|+|++||+++|++|+ +++++|++||+||++.|.+... ++++|||++||+ + +
T Consensus 55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~----~GivIdms~Ln~i~~~~~ii~ 130 (525)
T PLN02441 55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP----GGVVVDMRSLRGGVRGPPVIV 130 (525)
T ss_pred cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC----CeEEEECCCCCCcCccCceEE
Confidence 3477777789999999999999999999997 6799999999999999888765 579999999999 3 7
Q ss_pred EeCCCCEEEEcCCCcHHHHHHHHHHhCCceeec-CCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec
Q 009485 141 VDINQNTAWVQAGATVGELYYRIYEKSNIHGFP-AGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD 219 (533)
Q Consensus 141 ~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~ 219 (533)
+|.+..+|+|++|++|.++.+++.++|+ .++ .+....++|||++++||.|..+.+||..+|+|++++||+++|++++
T Consensus 131 vd~~~~~VtV~aG~~~~dv~~~l~~~Gl--aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~ 208 (525)
T PLN02441 131 VSGDGPYVDVSGGELWIDVLKATLKHGL--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVT 208 (525)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHCCC--ccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEE
Confidence 8888999999999999999999999984 332 3666788999999999999999999999999999999999999997
Q ss_pred -ccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecc
Q 009485 220 -RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTL 265 (533)
Q Consensus 220 -~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~ 265 (533)
++.+|+|||||+|||. |+|||||++|+|++|+|+...++.+.+..
T Consensus 209 ~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 209 CSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred eCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 6677999999999987 89999999999999999977776666653
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=5.9e-34 Score=307.80 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=167.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcH
Q 009485 78 PKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATV 156 (533)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~ 156 (533)
..|.+|++|+|++||+++|++|+++++|+++|||||++.|.+...+ ++++|||++||+| ++|+++.+|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~---ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH---GGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC---CEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 4799999999999999999999999999999999999998876542 5899999999998 79999999999999999
Q ss_pred HHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceecc------cCCCcchHHH
Q 009485 157 GELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDR------AAMGEDLFWA 230 (533)
Q Consensus 157 ~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~------~~~~~dl~~a 230 (533)
.+|+++|.++| +.++...++.++|||+++++++|..+.+||.++|+|++++||++||++++. ...++||+|+
T Consensus 209 ~~L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 99999999998 456666667789999999999999999999999999999999999999951 1246899999
Q ss_pred hhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecchhhHHHHH
Q 009485 231 IRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNIL 273 (533)
Q Consensus 231 ~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (533)
++|+. |+|||||+++||++|.|+......+.|+..+++.+++
T Consensus 287 ~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av 328 (555)
T PLN02805 287 VIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVA 328 (555)
T ss_pred hccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHH
Confidence 99887 8999999999999999987777777776444444444
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.6e-33 Score=295.30 Aligned_cols=197 Identities=22% Similarity=0.331 Sum_probs=170.8
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAW 149 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~ 149 (533)
+|+.+....|.+|+.|+|++||+++|++|++++++|+++|+|||+.+.+.. ++++|||++||+| ++|.++++|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-----~gvvIdl~~l~~i~~id~~~~~vt 80 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-----DGFLIHLDKMNKVLQFDKEKKQIT 80 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-----CeEEEEhhhcCCceEEcCCCCEEE
Confidence 477778889999999999999999999999999999999999999876543 3699999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHHhCCceeec-CCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec-ccCCCcch
Q 009485 150 VQAGATVGELYYRIYEKSNIHGFP-AGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDL 227 (533)
Q Consensus 150 v~aG~~~~~l~~~l~~~g~~~~~~-~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl 227 (533)
|+||+++.+|.+.|.++|+ .++ .|.++.++|||.+++|+||. +.+||..+|+|+++++|++||++++ +..+++||
T Consensus 81 V~aG~~l~~L~~~L~~~Gl--~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dl 157 (438)
T TIGR01678 81 VEAGIRLYQLHEQLDEHGY--SMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADV 157 (438)
T ss_pred EcCCCCHHHHHHHHHHcCC--EecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhH
Confidence 9999999999999999985 444 58889999999999999997 6899999999999999999999997 55678999
Q ss_pred HHHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecchhhHHHHHHHHHHHHH
Q 009485 228 FWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVAD 281 (533)
Q Consensus 228 ~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (533)
||+.+||. |+|||||++|||++|........ .. ....++++.|++...
T Consensus 158 f~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 158 FQAARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHWK 205 (438)
T ss_pred HHHHhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHhh
Confidence 99999987 89999999999999976544321 11 234567777766543
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=5.1e-33 Score=298.98 Aligned_cols=189 Identities=22% Similarity=0.288 Sum_probs=165.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGA 154 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~ 154 (533)
.+..|.+|++|+|++||+++|++|+++++||++||+||++.|.+.+. .++++|||++||+| ++|+++++|+||||+
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~---~~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL---EKGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC---CCcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 35689999999999999999999999999999999999998776654 24799999999997 999999999999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceeccc-----CCCcchHH
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRA-----AMGEDLFW 229 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~~-----~~~~dl~~ 229 (533)
++.+|.++|.++|+.+.+.+++...++|||++++++.|+.+.+||.+.|+|++++||++||++++.. ..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 9999999999998644334556667889999999999999999999999999999999999999622 34799999
Q ss_pred HhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecchhh
Q 009485 230 AIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQG 268 (533)
Q Consensus 230 a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (533)
+++|+. |+|||||++|||++|.|+....+.+.|...++
T Consensus 209 l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~ 246 (499)
T PRK11230 209 LFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEK 246 (499)
T ss_pred hhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHH
Confidence 999887 89999999999999999877666666654333
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.4e-32 Score=295.56 Aligned_cols=185 Identities=29% Similarity=0.351 Sum_probs=163.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGA 154 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~ 154 (533)
....|.+|+.|+|++||+++|++|+++++||++||+||++.|.+.+. + +|||||++||+| ++|+++++++|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~---gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G---GVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C---cEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 34589999999999999999999999999999999999999887665 2 799999999998 799999999999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceecc------cCCCcchH
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDR------AAMGEDLF 228 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~------~~~~~dl~ 228 (533)
++.+|.++|.++|+.+.+.+++..+++|||++++|++|..+.+||.+.|+|+++++|++||++++. +..++||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 999999999999865544455555899999999999999999999999999999999999999961 24458999
Q ss_pred HHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecc
Q 009485 229 WAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTL 265 (533)
Q Consensus 229 ~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~ 265 (533)
+++.||. |+|||||++|+|++|.|+........+..
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 9998876 99999999999999998876555554443
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.4e-31 Score=282.75 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=163.1
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAW 149 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~ 149 (533)
.|+.+....|.+|+.|+|++||+++|+.|++ +|+++|+|||+.+.+.. ++++|||++||+| ++|+++++|+
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-----~g~~idl~~l~~i~~~d~~~~~v~ 74 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-----DGTMISLTGLQGVVDVDQPTGLAT 74 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-----CCEEEEhhHcCCceeecCCCCEEE
Confidence 3887778899999999999999999999974 79999999999876543 3699999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec-ccCCCcchH
Q 009485 150 VQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDLF 228 (533)
Q Consensus 150 v~aG~~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~ 228 (533)
|+||+++.+|.+.|.++|+.+.. .|.+..++|||.+++|+||. +..||..+|+|++++||++||++++ ++.+|||||
T Consensus 75 v~aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf 152 (419)
T TIGR01679 75 VEAGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMY 152 (419)
T ss_pred EcCCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHH
Confidence 99999999999999999864432 35556688999999999997 4689999999999999999999997 566789999
Q ss_pred HHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecchhhHHHHHHHHHHHHH
Q 009485 229 WAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVAD 281 (533)
Q Consensus 229 ~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (533)
||+|||. |+|||||++|||++|.+........ . ...++++.+.++..
T Consensus 153 ~a~~g~~-G~lGVIt~vtl~~~p~~~~~~~~~~-~----~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 153 LAARVSL-GALGVISQVTLQTVALFRLRRRDWR-R----PLAQTLERLDEFVD 199 (419)
T ss_pred HHHHhCC-CceEEEEEEEEEeecceEeEEEEEe-c----CHHHHHHHHHHHHh
Confidence 9999987 8999999999999998754332211 1 23445555666544
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=5.2e-32 Score=288.20 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=170.4
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAW 149 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~ 149 (533)
+|+.+..+.|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~-----g~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR-----AGMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC-----CeEEEhhhCCCCEEEcCCCCEEE
Confidence 4999999999999999999999999999999999999999999999877654 357999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHHhCCceeec-CCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec-ccCCCcch
Q 009485 150 VQAGATVGELYYRIYEKSNIHGFP-AGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDL 227 (533)
Q Consensus 150 v~aG~~~~~l~~~l~~~g~~~~~~-~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl 227 (533)
|+||+++.+|.+.|.++|+ .++ .|.+..++|||.+++|+||.. .+||..+|+|++++||+++|++++ +..+++||
T Consensus 128 V~AG~~l~~L~~~L~~~Gl--al~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYGI--TLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcCC--EeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 9999999999999999985 444 488889999999999999985 579999999999999999999997 55678999
Q ss_pred HHHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecchhhHHHHHHHHHHHH
Q 009485 228 FWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVA 280 (533)
Q Consensus 228 ~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (533)
|||.|||. |+|||||++|||++|.+..... ....+ ..++++.|.++.
T Consensus 205 F~Aargsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 205 FFLARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHHhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 99999987 8999999999999998874322 21122 345666666654
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=9.7e-31 Score=282.22 Aligned_cols=182 Identities=21% Similarity=0.233 Sum_probs=159.5
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEe-CCcCCCCCccccCCCCCeEEEEcCCCCc-EEEeCCCCEE
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRS-GGHDYEGLSYASEIETPFIVVDLARLRS-VNVDINQNTA 148 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~g-gGh~~~g~s~~~~g~~~gvvIdl~~~~~-i~~d~~~~~v 148 (533)
+|+.+....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+ .+++++|||++||+ +++|.++++|
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~-~~ggvvIdL~~Ln~il~iD~~~~tV 101 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDG-SDGALLISTKRLNHVVAVDATAMTV 101 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCC-CCCEEEEEcccCCCCEEEeCCCCEE
Confidence 4999999999999999999999999999999999999996 5999887654431 12469999999999 5999999999
Q ss_pred EEcCCCcHHHHHHHHHHhCCceeecC-CCCCCccccccccCCCCCCCc-cccCccccceeeeEEEccCC------ceec-
Q 009485 149 WVQAGATVGELYYRIYEKSNIHGFPA-GLCTSLGIGGHITGGAYGSMM-RKYGIGADNVLDARIVDARG------RVLD- 219 (533)
Q Consensus 149 ~v~aG~~~~~l~~~l~~~g~~~~~~~-G~~~~vgvgG~~~ggg~g~~~-~~~G~~~d~v~~~~vV~~~G------~~~~- 219 (533)
+|+||+++.+|.+.|.++|+ .++. +.+..++|||.+++|+||... ++||..+|+|++++||+++| ++++
T Consensus 102 tV~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 102 TVESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred EECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 99999999999999999984 4444 455678999999999999865 68999999999999999998 7775
Q ss_pred ccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceE
Q 009485 220 RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATV 256 (533)
Q Consensus 220 ~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~ 256 (533)
+..+++|||||+|||+ |+|||||++|||++|.+...
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 5567899999999997 89999999999999987643
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=6e-30 Score=257.32 Aligned_cols=231 Identities=19% Similarity=0.252 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHHhcccc-ccccchhhhHHHHhccCcCCCCCCCcceEECCCCCChHHHHhhcccccccCCCCCCCccEE
Q 009485 5 AGIYVLSIASVFLLSASC-TASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFI 83 (533)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~v 83 (533)
.+..+|.+++++.+.... +.-..+.+++..-|.... .+.+-+- ......+- + - |....+..|.+|
T Consensus 2 ~~~~~lflI~~l~~i~~~~p~~~ks~~~~~~~l~~~~-------~~~~~~~-~~~~a~~s-~-d----Fg~~~~~~P~aV 67 (505)
T KOG1231|consen 2 ASSLRLFLITLLSIIKLITPVITKSSESLKKILGNSL-------EGTLESD-PSSVAHAS-T-D----FGNRTQLPPLAV 67 (505)
T ss_pred chhHHHHHHHHHHHHhcccchhhccCcchhhhcCccc-------cceeecc-chhhhhhh-h-h----ccccCCCCCeeE
Confidence 455667667777766543 333556667777776433 2232221 11122221 1 1 333445699999
Q ss_pred EecCCHHHHHHHHHHHHhc--CCeEEEEeCCcCCCCCccccCCCCCeEEEEcC---CCCcE-EEeCCCCEEEEcCCCcHH
Q 009485 84 FTPLYESHVQAAVICSKRL--GIHLRVRSGGHDYEGLSYASEIETPFIVVDLA---RLRSV-NVDINQNTAWVQAGATVG 157 (533)
Q Consensus 84 v~p~s~~dv~~~v~~a~~~--~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~---~~~~i-~~d~~~~~v~v~aG~~~~ 157 (533)
..|+|+|||+.++|.|... ++||++||+|||..|++... .+|+||.|+ .|+++ .+..++..|.|.||..|-
T Consensus 68 L~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~---~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Wi 144 (505)
T KOG1231|consen 68 LFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT---RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWI 144 (505)
T ss_pred EcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC---CCCeEEEEehhhccCCCceeecccceEEeeCChhHH
Confidence 9999999999999999999 99999999999999988773 256666553 45665 556677899999999999
Q ss_pred HHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec-ccCCCcchHHHhhcCCC
Q 009485 158 ELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDLFWAIRGGGG 236 (533)
Q Consensus 158 ~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rg~~~ 236 (533)
+|.+++.++|+.-...... ...+|||+++.+|.|..+.+||...+||++++||+++|++++ +...|++||+++.||.
T Consensus 145 dll~~t~e~GL~p~swtDy-l~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGgl- 222 (505)
T KOG1231|consen 145 DLLDYTLEYGLSPFSWTDY-LPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGL- 222 (505)
T ss_pred HHHHHHHHcCCCccCcCCc-cceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccC-
Confidence 9999999998510112222 237899999999999999999999999999999999999996 6668999999999888
Q ss_pred CceeEEEEEEEEEEeeCc
Q 009485 237 ASFGIILAWKVKLVPVPA 254 (533)
Q Consensus 237 g~~GiVt~~~l~~~~~~~ 254 (533)
|+|||||+++++++|+|.
T Consensus 223 GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 223 GQFGIITRARIKLEPAPK 240 (505)
T ss_pred cceeeEEEEEEEeccCCc
Confidence 899999999999999994
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=3.5e-30 Score=272.40 Aligned_cols=187 Identities=25% Similarity=0.268 Sum_probs=161.5
Q ss_pred EEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHHH
Q 009485 83 IFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELYY 161 (533)
Q Consensus 83 vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~ 161 (533)
||+|+|++||+++|++|+++++|++++|+||++.|.+.+.+ ++++|||++||+| ++|+++++++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~---~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE---GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC---CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 58899999999999999999999999999999987766552 5799999999998 9999999999999999999999
Q ss_pred HHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceecc------cCCCcchHHHhhcCC
Q 009485 162 RIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDR------AAMGEDLFWAIRGGG 235 (533)
Q Consensus 162 ~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~------~~~~~dl~~a~rg~~ 235 (533)
+|.++|+.+.+.+++...++|||.+++++.|..+.+||.++|+|++++||++||++++. ...++||+|.++|+.
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~ 157 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE 157 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC
Confidence 99999864433455556788999999999999999999999999999999999999962 234789999999887
Q ss_pred CCceeEEEEEEEEEEeeCceEEEEEEEecchhhHHHHH
Q 009485 236 GASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNIL 273 (533)
Q Consensus 236 ~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (533)
|+|||||+++||++|.|+....+.+.|...+++.+++
T Consensus 158 -GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~ 194 (413)
T TIGR00387 158 -GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAV 194 (413)
T ss_pred -ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHH
Confidence 8999999999999999987766666665433333333
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.9e-29 Score=258.12 Aligned_cols=170 Identities=23% Similarity=0.339 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCc-CCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHHHHHHH
Q 009485 88 YESHVQAAVICSKRLGIHLRVRSGGH-DYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELYYRIYE 165 (533)
Q Consensus 88 s~~dv~~~v~~a~~~~~~~~~~ggGh-~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~ 165 (533)
.++||+++|++|+++++|++++|||| ++.|.+ . .+++|||++||+| ++|+++.+|+|+||+++.+|.++|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~----~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--L----AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--C----CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 455553 2 2479999999998 99999999999999999999999999
Q ss_pred hCCceeecCC-CCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec------ccCCCcchHHHhhcCCCCc
Q 009485 166 KSNIHGFPAG-LCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD------RAAMGEDLFWAIRGGGGAS 238 (533)
Q Consensus 166 ~g~~~~~~~G-~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~------~~~~~~dl~~a~rg~~~g~ 238 (533)
+|+.+.+.++ .+..++|||++++|++|..+.+||..+|+|+++++|++||++++ ++..++||||+++|+. |+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-ch
Confidence 9865555343 44468999999999999999999999999999999999999996 2335789999999987 99
Q ss_pred eeEEEEEEEEEEeeCceEEEEEEEec
Q 009485 239 FGIILAWKVKLVPVPATVTVFTVSKT 264 (533)
Q Consensus 239 ~GiVt~~~l~~~~~~~~~~~~~~~~~ 264 (533)
|||||++|||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999987655555443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=3e-28 Score=261.43 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=166.5
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAW 149 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~ 149 (533)
+|+.+..+.|.+++.|+|++||+++|++|++++++|+++|+|||+.+.+..+ +.+|||++|++| ++|.++++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td-----~glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR-----EGMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC-----CEEEECcCCCCcEEEeCCCCEEE
Confidence 5999999999999999999999999999999999999999999998776654 346899999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHHhCCceeecC-CCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec-ccCCCcch
Q 009485 150 VQAGATVGELYYRIYEKSNIHGFPA-GLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDL 227 (533)
Q Consensus 150 v~aG~~~~~l~~~l~~~g~~~~~~~-G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl 227 (533)
|+||+++.+|.+.|.++|+. ++. |.....+|||.+++|+||.. ..+|..+|+|++++||+++|++++ +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~GLa--l~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHGLT--LQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcCCE--eccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 99999999999999999854 443 66667889999999999985 479999999999999999999886 55568999
Q ss_pred HHHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecchhhHHHHHHHHHHHH
Q 009485 228 FWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVA 280 (533)
Q Consensus 228 ~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (533)
||+.|+|. |.|||||++|||+.|.+..... ....+ ..++++.+.++.
T Consensus 240 F~aar~gl-G~lGVIteVTLql~P~~~L~~~-~~~~~----~~~~~~~~~~~~ 286 (573)
T PLN02465 240 FRLARCGL-GGLGVVAEVTLQCVPAHRLVEH-TFVSN----RKEIKKNHKKWL 286 (573)
T ss_pred HhHhhccC-CCCcEEEEEEEEEEecCceEEE-EEEec----HHHHHHHHHHHH
Confidence 99999888 8999999999999998864321 22222 234555555554
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=1.1e-26 Score=209.15 Aligned_cols=136 Identities=35% Similarity=0.526 Sum_probs=124.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc-EEEeCCCCEEEEcCCCcHHH
Q 009485 80 PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS-VNVDINQNTAWVQAGATVGE 158 (533)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~-i~~d~~~~~v~v~aG~~~~~ 158 (533)
|.+|++|+|++||+++|++|+++++|++++|+||++.+.+... ++++|||++|++ +++|+++++++|+||+++.|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~----~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE----GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST----TEEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC----CcEEEeeccccccccccccceeEEEeccccchh
Confidence 7899999999999999999999999999999999998776533 689999999999 59999999999999999999
Q ss_pred HHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec
Q 009485 159 LYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD 219 (533)
Q Consensus 159 l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~ 219 (533)
|+++|.++|+.+.+.++.+..+++||++.+|++|..++.||..+|+|+++++|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999985444457888889999999999999999999999999999999999999985
No 14
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=3.7e-24 Score=224.77 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=159.7
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCC--CCeEEEEcCCCCcE-EEeCCCCEEEEcCC
Q 009485 77 VPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIE--TPFIVVDLARLRSV-NVDINQNTAWVQAG 153 (533)
Q Consensus 77 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~--~~gvvIdl~~~~~i-~~d~~~~~v~v~aG 153 (533)
...|.+||+|.|++||+++|++|+++++||++||||+++.|.+.+.+++ .++|||||++||+| ++| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 4579999999999999999999999999999999999999988875321 14899999999998 788 5678999999
Q ss_pred CcHHHHHHHHHHhCCceeecCCC-CCCccccccccCCCCCCCccccCccccceeeeEEEccCCce-------ec--c---
Q 009485 154 ATVGELYYRIYEKSNIHGFPAGL-CTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRV-------LD--R--- 220 (533)
Q Consensus 154 ~~~~~l~~~l~~~g~~~~~~~G~-~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~-------~~--~--- 220 (533)
+++.+|.++|.++|+......|+ |-.++|||.++.++.|....+||...++++. ++|+++|++ ++ .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999998532221233 3345789999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------chHHHh--hcCCCCceeEEEEEEEEEEeeCceEEE
Q 009485 221 ------AAMGE----------------------------------DLFWAI--RGGGGASFGIILAWKVKLVPVPATVTV 258 (533)
Q Consensus 221 ------~~~~~----------------------------------dl~~a~--rg~~~g~~GiVt~~~l~~~~~~~~~~~ 258 (533)
+..+. |+...+ .|+. |++||| +++|+++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11233 777777 7666 999999 999999999998888
Q ss_pred EEEEecchhhHHHHHH
Q 009485 259 FTVSKTLEQGATNILY 274 (533)
Q Consensus 259 ~~~~~~~~~~~~~~~~ 274 (533)
|.+.++..+.+.++.+
T Consensus 272 f~ig~n~~~~~~~~rr 287 (564)
T PRK11183 272 FYIGTNDPAVLTEIRR 287 (564)
T ss_pred EEEeCCCHHHHHHHHH
Confidence 8888875554444443
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.4e-24 Score=219.46 Aligned_cols=164 Identities=23% Similarity=0.222 Sum_probs=139.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCC-CCcEEEeCCCCEEEEcCCC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLAR-LRSVNVDINQNTAWVQAGA 154 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~-~~~i~~d~~~~~v~v~aG~ 154 (533)
....|.+++.|+|++||+++|++|+++++|+.++|+|||+... +.+.++++|||++ |+.+++ ++.+++|+||+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~----d~g~~gvvI~l~~~l~~i~~--~~~~v~v~aG~ 100 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVR----DGGIRGVVIRLGKGLNEIEV--EGNRITAGAGA 100 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEec----CCCcceEEEEecCCcceEEe--cCCEEEEECCC
Confidence 3458999999999999999999999999999999999997632 2123589999998 998855 45789999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccC-ccccceeeeEEEccCCceecccCCCcchHHHhhc
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYG-IGADNVLDARIVDARGRVLDRAAMGEDLFWAIRG 233 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg 233 (533)
+|.+|.+++.++|+ .|.+..+|++|.+ ||+++++++.|| .++|+|+++++|++||++++.. +.|++|+||+
T Consensus 101 ~~~~L~~~l~~~Gl-----~gle~~~gipGTV-GGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~ 172 (298)
T PRK13905 101 PLIKLARFAAEAGL-----SGLEFAAGIPGTV-GGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRH 172 (298)
T ss_pred cHHHHHHHHHHcCC-----CcchhccCCCcch-hHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcc
Confidence 99999999999984 4666677777754 888888899998 6899999999999999999754 3599999999
Q ss_pred CCCC-ceeEEEEEEEEEEeeC
Q 009485 234 GGGA-SFGIILAWKVKLVPVP 253 (533)
Q Consensus 234 ~~~g-~~GiVt~~~l~~~~~~ 253 (533)
+..+ .+||||+++||++|..
T Consensus 173 s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 173 SALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 8754 3799999999999863
No 16
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=198.00 Aligned_cols=232 Identities=18% Similarity=0.230 Sum_probs=186.0
Q ss_pred cchhhhHHHHhccCcCCCCCCCcceEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCe
Q 009485 26 YSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIH 105 (533)
Q Consensus 26 ~~~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~ 105 (533)
.-.+++|...|+...++.|..-..+++.-....-.+... + |.......|+.||.|++.+||..+|+.|.++++-
T Consensus 113 ~VeNedflh~Lket~isyS~Ea~dRl~R~HGhtlhdi~~--L----regkf~RiPDiVvWP~chdevVkiv~lA~khN~~ 186 (613)
T KOG1233|consen 113 PVENEDFLHFLKETKISYSNEARDRLMRGHGHTLHDIIN--L----REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCA 186 (613)
T ss_pred CccchHHHHHHHhccCccchhHHHHHHhhcCchHHHHHH--H----hcCccCCCCceEecccchHHHHHHHHHHhhcCeE
Confidence 346778999998766566555455555444445554432 2 3344456999999999999999999999999999
Q ss_pred EEEEeCCcCCC-CCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceeecCCCCCCcccc
Q 009485 106 LRVRSGGHDYE-GLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIG 183 (533)
Q Consensus 106 ~~~~ggGh~~~-g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~G~~~~vgvg 183 (533)
+.+.|||++.+ +..++.+.....+-+||+.||+| .+|.++-++++++|++..+|.+.|.+.|+.....+.+....++|
T Consensus 187 iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlG 266 (613)
T KOG1233|consen 187 IIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLG 266 (613)
T ss_pred EEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeeccc
Confidence 99999999986 44555542222445788999998 89999999999999999999999999986333344555567899
Q ss_pred ccccCCCCCCCccccCccccceeeeEEEccCCceec-----ccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceEEE
Q 009485 184 GHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-----RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTV 258 (533)
Q Consensus 184 G~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-----~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~ 258 (533)
|++++.+.|+.-..||.+-|-|+.+++|+|.|.+.+ .-+.+||+..-+.|+- |++||||++++|+.|+|+....
T Consensus 267 GWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~~ry 345 (613)
T KOG1233|consen 267 GWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRY 345 (613)
T ss_pred ceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCCCcceEEeccC-cceeEEEEEEEEEeechhhhhc
Confidence 999999999999999999999999999999999874 3356899998888776 9999999999999999997766
Q ss_pred EEEEec
Q 009485 259 FTVSKT 264 (533)
Q Consensus 259 ~~~~~~ 264 (533)
..+.|+
T Consensus 346 GS~aFP 351 (613)
T KOG1233|consen 346 GSFAFP 351 (613)
T ss_pred CccccC
Confidence 666665
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=5.2e-23 Score=202.55 Aligned_cols=187 Identities=21% Similarity=0.273 Sum_probs=171.4
Q ss_pred ccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCC
Q 009485 67 AQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQ 145 (533)
Q Consensus 67 ~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~ 145 (533)
.+|.-|....+.....|..|+|+++|++++++|++.++.|+++||.+...|.|++. .+.|||+|.+||+| ++|+-.
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPv---fDEiVlsl~~mNKi~sfDevs 153 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPV---FDEIVLSLGLMNKILSFDEVS 153 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccc---hHHHhhhhhhhcccccccccc
Confidence 35666888888899999999999999999999999999999999999999988875 46799999999998 899999
Q ss_pred CEEEEcCCCcHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec------
Q 009485 146 NTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD------ 219 (533)
Q Consensus 146 ~~v~v~aG~~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~------ 219 (533)
+++++++|+.+.++...++++|+.+++.-|.-+++-|||.+++++.|..--+||....+|+++|+|+|+|+|+.
T Consensus 154 Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slR 233 (511)
T KOG1232|consen 154 GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLR 233 (511)
T ss_pred ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhc
Confidence 99999999999999999999998777778888999999999999999999999999999999999999999994
Q ss_pred ccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceEE
Q 009485 220 RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVT 257 (533)
Q Consensus 220 ~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~ 257 (533)
++.++.|+-..+.|+- |++||||++++-+.|.|+.+.
T Consensus 234 KDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn 270 (511)
T KOG1232|consen 234 KDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVN 270 (511)
T ss_pred ccCccccchhheecCC-ceeeEEeeEEEeecCCCccee
Confidence 4567889999999776 999999999999999988653
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.88 E-value=4.1e-22 Score=201.04 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=160.7
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEE
Q 009485 72 YLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWV 150 (533)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v 150 (533)
|..+..++..-|-+|+|++|+.++|+.|++++.++++.|.||+..+..+.+ |.+|++++||++ ++|++..++||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc-----ccEEEhhhhccceeeCchhceEEe
Confidence 666667788899999999999999999999999999999999999887766 589999999997 99999999999
Q ss_pred cCCCcHHHHHHHHHHhCCceeec-CCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec-ccCCCcchH
Q 009485 151 QAGATVGELYYRIYEKSNIHGFP-AGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDLF 228 (533)
Q Consensus 151 ~aG~~~~~l~~~l~~~g~~~~~~-~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~ 228 (533)
++|+++.||.+++++.| +.++ .|.....+|||.+..|+||....-|+......+...++.++|.++. ++..+||+|
T Consensus 117 ~aGirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 99999999999999987 4444 4777889999999999999977767777777777778888998776 667789999
Q ss_pred HHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEE
Q 009485 229 WAIRGGGGASFGIILAWKVKLVPVPATVTVFTVS 262 (533)
Q Consensus 229 ~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~ 262 (533)
.|.+-+. |-+|||.++||++.|.-+...++.+.
T Consensus 195 ~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 195 NAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999998 89999999999999987766555553
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=3.4e-22 Score=201.98 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=135.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCc
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGAT 155 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~ 155 (533)
+...|.+++.|+|++||++++++|+++++|++++|+|||+. ..|++.++++|+|++|+.++++ +.+++|+||+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll----~~d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI----IKDGGIRGITVSLIHITGVTVT--GTTIVAQCGAA 106 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----EeCCCeeEEEEEeCCcCcEEEe--CCEEEEEeCCc
Confidence 45579999999999999999999999999999999999987 2333345899999889998776 46899999999
Q ss_pred HHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeeEEEccCCceecccCCCcchHHHhhcC
Q 009485 156 VGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGI-GADNVLDARIVDARGRVLDRAAMGEDLFWAIRGG 234 (533)
Q Consensus 156 ~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~ 234 (533)
+.+|.+++.++|+ .|....+|++|.+ ||+..++++.||. ..|.+.+++|+++||++++.. ..|+.|+||.+
T Consensus 107 ~~~L~~~~~~~gl-----~Gle~~~giPGtV-GGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s 178 (305)
T PRK12436 107 IIDVSRIALDHNL-----TGLEFACGIPGSV-GGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKS 178 (305)
T ss_pred HHHHHHHHHHcCC-----ccchhhcCCccch-hHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCC
Confidence 9999999999985 3555555666665 7888888888995 568888999999999999754 34899999987
Q ss_pred CCC-ceeEEEEEEEEEEee
Q 009485 235 GGA-SFGIILAWKVKLVPV 252 (533)
Q Consensus 235 ~~g-~~GiVt~~~l~~~~~ 252 (533)
... ...||++++|++.+.
T Consensus 179 ~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 179 VFANNHYIILEARFELEEG 197 (305)
T ss_pred cCCCCCEEEEEEEEEEcCC
Confidence 543 257999999999764
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=5.4e-22 Score=200.05 Aligned_cols=163 Identities=21% Similarity=0.232 Sum_probs=135.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCC-CCcEEEeCCCCEEEEcCCC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLAR-LRSVNVDINQNTAWVQAGA 154 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~-~~~i~~d~~~~~v~v~aG~ 154 (533)
+...|.+++.|+|++||++++++|+++++|+.++|+|||+. ..|++.+++||++++ ++.+..+ +.+++|+||+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNll----v~d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~ 105 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTL----VADAGVRGVVLRLPQDFPGESTD--GGRLVLGAGA 105 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCccee----ecCCCEeeEEEEecCCcceEEec--CCEEEEECCC
Confidence 45689999999999999999999999999999999999986 223223589999976 5556543 5699999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCcc-ccCccccceeeeEEEccCCceecccCCCcchHHHhhc
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMR-KYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRG 233 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~-~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg 233 (533)
.|.+|.+++.++|+ .|.++.+||+|.+ ||+..++++ +||.++|+|+++++|+++| +++.. ..|+.|+||+
T Consensus 106 ~~~~L~~~~~~~GL-----~GlE~l~gIPGTv-GGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~ 176 (302)
T PRK14652 106 PISRLPARAHAHGL-----VGMEFLAGIPGTL-GGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRT 176 (302)
T ss_pred cHHHHHHHHHHcCC-----cccccccCCCcch-hHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccce
Confidence 99999999999984 4888999999965 999999986 5666899999999999999 44433 3599999998
Q ss_pred CCCCceeEEEEEEEEEEeeC
Q 009485 234 GGGASFGIILAWKVKLVPVP 253 (533)
Q Consensus 234 ~~~g~~GiVt~~~l~~~~~~ 253 (533)
+..+..||||+++||++|..
T Consensus 177 s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eccCCCeEEEEEEEEEecCC
Confidence 65333489999999999853
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.87 E-value=6.1e-22 Score=198.43 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=140.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCc
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGAT 155 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~ 155 (533)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.. .+++||++++|+.+.+++ +.+++|+||+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~----~~gvvi~l~~~~~~~~~~-~~~v~v~aG~~ 83 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG----RGGVIINLGKGIDIEDDE-GEYVHVGGGEN 83 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC----cCeEEEECCCCceEEEec-CCEEEEEcCCc
Confidence 3457999999999999999999999999999999999998854432 368999999998887665 57999999999
Q ss_pred HHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcccc-ceeeeEEEccCCceecccCCCcchHHHhhcC
Q 009485 156 VGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGAD-NVLDARIVDARGRVLDRAAMGEDLFWAIRGG 234 (533)
Q Consensus 156 ~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d-~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~ 234 (533)
|.+|.+++.++|+ .|.+..+|++|.+ ||+.+++++.||..++ +|+++++|++||++++... .|+.|+||.+
T Consensus 84 ~~~l~~~~~~~Gl-----~GlE~l~giPGtv-GGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S 155 (284)
T TIGR00179 84 WHKLVKYALKNGL-----SGLEFLAGIPGTV-GGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTS 155 (284)
T ss_pred HHHHHHHHHHCCC-----cccccCCCCCchH-HHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCcc
Confidence 9999999999984 5899999999965 9999999999999885 6899999999999997543 4999999976
Q ss_pred CCCc-e-eEEEEEEEEEEe
Q 009485 235 GGAS-F-GIILAWKVKLVP 251 (533)
Q Consensus 235 ~~g~-~-GiVt~~~l~~~~ 251 (533)
.... . .||++++|++.+
T Consensus 156 ~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 156 IFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred ccCCCCcEEEEEEEEEecc
Confidence 5422 1 599999999843
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=1.1e-21 Score=198.32 Aligned_cols=161 Identities=23% Similarity=0.237 Sum_probs=138.3
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCcH
Q 009485 77 VPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATV 156 (533)
Q Consensus 77 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~ 156 (533)
...+.+++.|+|++||+++|++|+++++|+.++|+|||+. ..|++.+++||++++|++++++ +.+++|+||+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll----~~d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~~ 107 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII----IREGGIRGIVISLLSLDHIEVS--DDAIIAGSGAAI 107 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe----ecCCCcceEEEEecCccceEEe--CCEEEEECCCcH
Confidence 3579999999999999999999999999999999999987 2333346899999889999876 358999999999
Q ss_pred HHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccC-ccccceeeeEEEccCCceecccCCCcchHHHhhcCC
Q 009485 157 GELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYG-IGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGG 235 (533)
Q Consensus 157 ~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~~ 235 (533)
.+|.+++.++|+ .|.+..+||+|.+ ||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+.
T Consensus 108 ~~l~~~~~~~Gl-----~GlE~~~gIPGtV-GGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~ 179 (307)
T PRK13906 108 IDVSRVARDYAL-----TGLEFACGIPGSI-GGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSI 179 (307)
T ss_pred HHHHHHHHHcCC-----ccchhhcCCCccH-hHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCccc
Confidence 999999999984 5777778899955 999999999996 77999999999999999997543 48999999765
Q ss_pred CCc-eeEEEEEEEEEEe
Q 009485 236 GAS-FGIILAWKVKLVP 251 (533)
Q Consensus 236 ~g~-~GiVt~~~l~~~~ 251 (533)
.-. --||++++|++.|
T Consensus 180 ~~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 180 IQKEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCCCEEEEEEEEEECC
Confidence 432 2499999999986
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=5.4e-21 Score=196.06 Aligned_cols=165 Identities=25% Similarity=0.230 Sum_probs=137.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCc
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGAT 155 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~ 155 (533)
+...+.+++.|+|++||++++++|+++++|+.++|+|||+. ..|++.+++||+++ ++.++++.++.+++|+||+.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlL----v~D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~ 103 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLV----IADDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAV 103 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEe----ECCCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCC
Confidence 45579999999999999999999999999999999999986 33333568999997 58888876667999999999
Q ss_pred HHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEEccC-CceecccCCCcchHHHhhc
Q 009485 156 VGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIVDAR-GRVLDRAAMGEDLFWAIRG 233 (533)
Q Consensus 156 ~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV~~~-G~~~~~~~~~~dl~~a~rg 233 (533)
|.+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||.. +|.|.++++++.+ |++++.. +.|++|+||+
T Consensus 104 ~~~l~~~a~~~GL-----~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~ 175 (363)
T PRK13903 104 WDDVVARTVEAGL-----GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRT 175 (363)
T ss_pred HHHHHHHHHHcCC-----ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccc
Confidence 9999999999995 5666666666766 66777777778865 7999999999965 9999754 5699999998
Q ss_pred CCC--CceeEEEEEEEEEEeeC
Q 009485 234 GGG--ASFGIILAWKVKLVPVP 253 (533)
Q Consensus 234 ~~~--g~~GiVt~~~l~~~~~~ 253 (533)
+.. ++++|||+++|++.|..
T Consensus 176 S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 176 SVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cccCCCCCEEEEEEEEEEEcCC
Confidence 632 24789999999999863
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=5.7e-19 Score=177.68 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=135.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCC-cEEEeCCCCEEEEcCCC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLR-SVNVDINQNTAWVQAGA 154 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~-~i~~d~~~~~v~v~aG~ 154 (533)
+-....+++.|+|++|+++++++|+++++|+.++|+|||+...+. +.+++||++++++ ++..+.+..+++|+||+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~----g~~GvVI~l~~~~~~i~~~~~~~~v~v~AG~ 92 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDE----GFDGLVARYRGQRWELHEHGDTAEVWVEAGA 92 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCC----CcCeEEEEecCCCcEEEEeCCcEEEEEEcCC
Confidence 345788999999999999999999999999999999999974432 3468999998754 66655554589999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeeEEEccCCceecccCCCcchHHHhhc
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGI-GADNVLDARIVDARGRVLDRAAMGEDLFWAIRG 233 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg 233 (533)
.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||. ++|+|.++++++.+|++++... .||+|+||.
T Consensus 93 ~~~~l~~~~~~~GL-----~GlE~l~GIPGTv-GGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~ 164 (295)
T PRK14649 93 PMAGTARRLAAQGW-----AGLEWAEGLPGTI-GGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRT 164 (295)
T ss_pred cHHHHHHHHHHcCC-----ccccccCCCCcch-hHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccce
Confidence 99999999999984 6778899999955 7766666777775 6799999999999999987543 499999997
Q ss_pred CCCCce---------eEEEEEEEEEEee
Q 009485 234 GGGASF---------GIILAWKVKLVPV 252 (533)
Q Consensus 234 ~~~g~~---------GiVt~~~l~~~~~ 252 (533)
+..-.. -||++++|++.+.
T Consensus 165 S~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 165 SVLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred eecccccccccccCCeEEEEEEEEECCC
Confidence 653321 2899999998764
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=3.8e-18 Score=171.13 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=137.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCc
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGAT 155 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~ 155 (533)
+-....+++.|+|++|+++++++|++ ++|+.++|+|+|...... +.+++||.+++|+.++++ +..++|+||+.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~----g~~gvVI~l~~~~~i~i~--~~~v~v~AG~~ 102 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDE----PMDFVVVSTERLDDIFVD--NDKIICESGLS 102 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecC----CccEEEEEeCCcCceEEe--CCEEEEeCCCc
Confidence 34577899999999999999999999 999999999999884332 346899999779999886 35899999999
Q ss_pred HHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCc-cccceeeeEEEccCCceecccCCCcchHHHhhcC
Q 009485 156 VGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGI-GADNVLDARIVDARGRVLDRAAMGEDLFWAIRGG 234 (533)
Q Consensus 156 ~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~ 234 (533)
+.+|..++.++|+ .|....+||+|.+ ||+.-++++.||. +.|.|.++++++ +|++++... .|+-|.||.+
T Consensus 103 l~~L~~~~~~~GL-----~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S 173 (297)
T PRK14653 103 LKKLCLVAAKNGL-----SGFENAYGIPGSV-GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNS 173 (297)
T ss_pred HHHHHHHHHHCCC-----cchhhhcCCchhH-HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCccc
Confidence 9999999999984 6788888888887 9999999999999 789999999999 788886543 4999999976
Q ss_pred CCCc--eeEEEEEEEEEEee
Q 009485 235 GGAS--FGIILAWKVKLVPV 252 (533)
Q Consensus 235 ~~g~--~GiVt~~~l~~~~~ 252 (533)
.... --|||+++|++.|.
T Consensus 174 ~~~~~~~~iI~~a~f~L~~~ 193 (297)
T PRK14653 174 IFKEEKDLIILRVTFKLKKG 193 (297)
T ss_pred cCCCCCcEEEEEEEEEEecC
Confidence 5432 12999999999874
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=2e-17 Score=162.78 Aligned_cols=166 Identities=21% Similarity=0.231 Sum_probs=145.4
Q ss_pred CCCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCC
Q 009485 75 PSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGA 154 (533)
Q Consensus 75 ~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~ 154 (533)
++......++.|++++|+.++++++.+.++|+.+.|+|+|.. ..|++.+++||.+.+++.++++.+...++|++|+
T Consensus 16 riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlL----v~d~g~~gvvi~~~~~~~~~~~~~~~~i~a~aG~ 91 (291)
T COG0812 16 RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL----VRDGGIGGVVIKLGKLNFIEIEGDDGLIEAGAGA 91 (291)
T ss_pred ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEE----EecCCCceEEEEcccccceeeeccCCeEEEccCC
Confidence 345688899999999999999999999999999999999976 3444457899999999888887777799999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEEccCCceecccCCCcchHHHhhc
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIVDARGRVLDRAAMGEDLFWAIRG 233 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg 233 (533)
.|.+|.+.+.++|+ .|....+||+|.+ ||+.-|+.+.||.. +|.+.++++++.+|++.+.. +.||-|+||-
T Consensus 92 ~~~~l~~~~~~~gl-----~GlE~l~gIPGsv-Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~ 163 (291)
T COG0812 92 PWHDLVRFALENGL-----SGLEFLAGIPGSV-GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRT 163 (291)
T ss_pred cHHHHHHHHHHcCC-----cchhhhcCCCccc-chhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCccccc
Confidence 99999999999983 7888889999998 99999999999995 69999999999999999754 3499999997
Q ss_pred CCCCce-eEEEEEEEEEEee
Q 009485 234 GGGASF-GIILAWKVKLVPV 252 (533)
Q Consensus 234 ~~~g~~-GiVt~~~l~~~~~ 252 (533)
+....- .||++++|++.|-
T Consensus 164 S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 164 SPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CcCCCCCEEEEEEEEEeCCC
Confidence 665433 8999999999874
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=5.3e-17 Score=162.35 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=139.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCC-CCeEEEEcCCCCcEEEeCCCCEEEEcCCC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIE-TPFIVVDLARLRSVNVDINQNTAWVQAGA 154 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~-~~gvvIdl~~~~~i~~d~~~~~v~v~aG~ 154 (533)
+-....+++.|+|++|+++++++++++++|+.+.|+|+|.. ..|++ .+++||.+.+|+.++++. ..++|+||+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlL----v~D~g~~~g~vi~~~~~~~i~~~~--~~v~a~AG~ 102 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNIL----INDEEEIDFPIIYTGHLNKIEIHD--NQIVAECGT 102 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EECCCccceEEEEECCcCcEEEeC--CEEEEEeCC
Confidence 34577889999999999999999999999999999999987 34433 468999886799998763 479999999
Q ss_pred cHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEEccCCceecccCCCcchHHHhhc
Q 009485 155 TVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIVDARGRVLDRAAMGEDLFWAIRG 233 (533)
Q Consensus 155 ~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg 233 (533)
.|.+|..++.++|+ .|.+..+||+|.+ ||+.-++.+.||.. +|.|.++++++.+|++++.. ..|+.|+||.
T Consensus 103 ~~~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~ 174 (302)
T PRK14650 103 NFEDLCKFALQNEL-----SGLEFIYGLPGTL-GGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKI 174 (302)
T ss_pred cHHHHHHHHHHcCC-----chhhhhcCCCcch-hHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCccccc
Confidence 99999999999984 7888889999999 99999999999975 69999999999999998754 3489999997
Q ss_pred CCCCc-eeEEEEEEEEEEeeC
Q 009485 234 GGGAS-FGIILAWKVKLVPVP 253 (533)
Q Consensus 234 ~~~g~-~GiVt~~~l~~~~~~ 253 (533)
+.... -.||++++|++.|..
T Consensus 175 S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 175 SPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 65322 259999999998753
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.69 E-value=9.1e-17 Score=163.02 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=137.6
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEe-CCC--CEEEEcC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVD-INQ--NTAWVQA 152 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d-~~~--~~v~v~a 152 (533)
+-....+++.|+|++|+++++++|+++++|+.+.|+|+|..- .| +.+|+||.+ +++.++++ .++ ..++|+|
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv----~D-~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~A 90 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLF----TE-DFDGTVLLN-RIKGIEVLSEDDDAWYLHVGA 90 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEE----CC-CCCEEEEEe-cCCceEEEecCCCeEEEEEEc
Confidence 345778899999999999999999999999999999999873 33 256899988 48888773 222 2799999
Q ss_pred CCcHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEEccC-CceecccCCCcchHHH
Q 009485 153 GATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIVDAR-GRVLDRAAMGEDLFWA 230 (533)
Q Consensus 153 G~~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV~~~-G~~~~~~~~~~dl~~a 230 (533)
|+.|.+|.+.+.++|+ .|.+..+||+|++ ||+.-++.+.||.. .|.|.++++++.+ |++++.. ..|+.|+
T Consensus 91 G~~~~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~ 162 (334)
T PRK00046 91 GENWHDLVLWTLQQGM-----PGLENLALIPGTV-GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFG 162 (334)
T ss_pred CCcHHHHHHHHHHcCc-----hhhHHhcCCCcch-hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcc
Confidence 9999999999999984 7888889999999 99999999999975 6999999999987 9988754 3599999
Q ss_pred hhcCCCCc----eeEEEEEEEEEEee
Q 009485 231 IRGGGGAS----FGIILAWKVKLVPV 252 (533)
Q Consensus 231 ~rg~~~g~----~GiVt~~~l~~~~~ 252 (533)
||.+.... --||++++|++.|-
T Consensus 163 YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 163 YRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccCCCCCcCCEEEEEEEEEecCC
Confidence 99775432 23999999999884
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4.2e-16 Score=157.90 Aligned_cols=165 Identities=25% Similarity=0.291 Sum_probs=136.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEe---CCCCEEEEcC
Q 009485 76 SVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVD---INQNTAWVQA 152 (533)
Q Consensus 76 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d---~~~~~v~v~a 152 (533)
+-....+++.|+|.+|+++++++++++++|+.+.|+|+|.. ..|++.+++||.+++|+.+++. .+...++|+|
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL----~~D~g~~G~VI~l~~~~~i~i~~~~~~~~~v~agA 101 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVL----IADEGVPGLMLSLRRFRSLHTQTQRDGSVLVHAGA 101 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EeCCCccEEEEEeCCcCceEEeeccCCcEEEEEEe
Confidence 34577889999999999999999999999999999999987 3343457899999679888752 2224799999
Q ss_pred CCcHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEE--------------------
Q 009485 153 GATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIV-------------------- 211 (533)
Q Consensus 153 G~~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV-------------------- 211 (533)
|+.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||.. .|.|.+++++
T Consensus 102 G~~~~~Lv~~~~~~gl-----~GlE~laGIPGTV-GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~ 175 (354)
T PRK14648 102 GLPVAALLAFCAHHAL-----RGLETFAGLPGSV-GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQ 175 (354)
T ss_pred CCcHHHHHHHHHHcCC-----cchhhhcCCCcch-hhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccc
Confidence 9999999999999983 7888889999999 99999999999975 6999999999
Q ss_pred ccCCce-------------ecccCCCcchHHHhhcCCCCc---------eeEEEEEEEEEEee
Q 009485 212 DARGRV-------------LDRAAMGEDLFWAIRGGGGAS---------FGIILAWKVKLVPV 252 (533)
Q Consensus 212 ~~~G~~-------------~~~~~~~~dl~~a~rg~~~g~---------~GiVt~~~l~~~~~ 252 (533)
+.+|++ ++. .+.|+.|+||.+..-. --||++++|++.|.
T Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 176 DKRGECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred cCCCceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 456776 222 2458999999775432 23999999999874
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.66 E-value=3e-17 Score=118.27 Aligned_cols=47 Identities=51% Similarity=0.809 Sum_probs=34.8
Q ss_pred cccccCCCccCCCCCCCcchhhhhhhhhhhccccHHHHHHhhhccCCCCccccCCCCC
Q 009485 472 AYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529 (533)
Q Consensus 472 ~YvNy~d~~~~~~~~~~~~~~~~~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~qsI~ 529 (533)
+|+||+|.+++. ++|.+.|||+||+||++||++|||+|||+++||||
T Consensus 1 aY~Ny~d~~~~~-----------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG-----------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS-----------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch-----------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 699999998651 27999999999999999999999999999999997
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.53 E-value=3.6e-14 Score=140.09 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=123.0
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCC-CCcEEEeCCCCEEEEcCCCcH
Q 009485 78 PKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLAR-LRSVNVDINQNTAWVQAGATV 156 (533)
Q Consensus 78 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~-~~~i~~d~~~~~v~v~aG~~~ 156 (533)
....+++ |+|++|+++++ ++|+.+.|+|+|.. ..|++.+++||.+++ ++.++++ . +|+||+.|
T Consensus 19 G~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL----~~D~g~~g~vI~l~~~~~~~~~~--~---~a~AG~~~ 82 (273)
T PRK14651 19 GPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLL----VSDAGVPERVIRLGGEFAEWDLD--G---WVGGGVPL 82 (273)
T ss_pred ceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEE----EcCCCcceEEEEECCcceeEeEC--C---EEECCCcH
Confidence 3555666 99999999988 58999999999987 334345789998865 6666553 2 69999999
Q ss_pred HHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEEccCCceecccCCCcchHHHhhcCC
Q 009485 157 GELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGG 235 (533)
Q Consensus 157 ~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~~ 235 (533)
.+|.+++.++|+ .|....+||+|.+ ||+.-++.+.||.. .|.|.++++++ +|++++.. ..|+.|+||.+.
T Consensus 83 ~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~ 153 (273)
T PRK14651 83 PGLVRRAARLGL-----SGLEGLVGIPAQV-GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSG 153 (273)
T ss_pred HHHHHHHHHCCC-----cchhhhcCCCcch-hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccC
Confidence 999999999984 6888889999999 99999999999975 69999999997 89988755 349999999765
Q ss_pred CCceeEEEEEEEEEEee
Q 009485 236 GASFGIILAWKVKLVPV 252 (533)
Q Consensus 236 ~g~~GiVt~~~l~~~~~ 252 (533)
...--||++++|++.|-
T Consensus 154 ~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 154 LPPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCCEEEEEEEEEECCC
Confidence 33224999999999874
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=135.13 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=109.5
Q ss_pred EEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccceeee
Q 009485 130 VVDLARLRSV-NVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDA 208 (533)
Q Consensus 130 vIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~ 208 (533)
-|++..+..| ++|.+..+|+|+|+++++|+.+.|.+.|+.+++. ......++||.+.|-|+-..|++||+..+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhee
Confidence 3555544454 8999999999999999999999999999766543 4556788999999999999999999999999999
Q ss_pred EEEccCCceec--ccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceE
Q 009485 209 RIVDARGRVLD--RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATV 256 (533)
Q Consensus 209 ~vV~~~G~~~~--~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~ 256 (533)
|||++||++++ .++++.|||+|+--+. |++|..+.+|+|+.|..+.+
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 99999999996 4457899999999998 89999999999999988754
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.29 E-value=1e-11 Score=121.61 Aligned_cols=144 Identities=14% Similarity=0.128 Sum_probs=115.4
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCcH
Q 009485 77 VPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATV 156 (533)
Q Consensus 77 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~ 156 (533)
-....+++.|++.+ + ++|+.+.|+|+|.. ..|++.++++ -+++++.++++. ..++|+||+.|
T Consensus 16 GG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlL----v~D~g~~~vv-~~~~~~~~~~~~--~~v~~~AG~~l 77 (257)
T PRK13904 16 GPPLEVLVLEEIDD-F----------SQDGQIIGGANNLL----ISPNPKNLAI-LGKNFDYIKIDG--ECLEIGGATKS 77 (257)
T ss_pred CceEEEEEEechhh-h----------CCCeEEEeceeEEE----EecCCccEEE-EccCcCeEEEeC--CEEEEEcCCcH
Confidence 34667788888887 5 89999999999987 3333334454 345688888753 48999999999
Q ss_pred HHHHHHHHHhCCceeecCCCCCCccccccccCCCCCCCccccCcc-ccceeeeEEEccCCceecccCCCcchHHHhhcCC
Q 009485 157 GELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIG-ADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGG 235 (533)
Q Consensus 157 ~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~~ 235 (533)
.+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||.. +|.|.++++++ |+ + ...|+.|+||.+.
T Consensus 78 ~~l~~~~~~~gl-----~GlE~l~gIPGtV-GGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~ 144 (257)
T PRK13904 78 GKIFNYAKKNNL-----GGFEFLGKLPGTL-GGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSG 144 (257)
T ss_pred HHHHHHHHHCCC-----chhhhhcCCCccH-HHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcC
Confidence 999999999984 7888889999999 99999999999975 69999999998 42 2 2358999999765
Q ss_pred CCceeEEEEEEEEEEeeC
Q 009485 236 GASFGIILAWKVKLVPVP 253 (533)
Q Consensus 236 ~g~~GiVt~~~l~~~~~~ 253 (533)
.. .||++++||+.|..
T Consensus 145 ~~--~iIl~a~f~l~~~~ 160 (257)
T PRK13904 145 IN--GVILEARFKKTHGF 160 (257)
T ss_pred CC--cEEEEEEEEECCCC
Confidence 32 49999999998753
No 34
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.84 E-value=0.079 Score=57.25 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=88.6
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCC-ccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHH
Q 009485 80 PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGL-SYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVG 157 (533)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~ 157 (533)
..-++.|+|.+|+.++++- +. ...+.+||+++.-. .... .....+||++++..+ .+..+++.+++||++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQM--RDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCC--CCCCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 4568999999999988763 22 35778999997311 1111 123589999876544 344456789999999999
Q ss_pred HHHHHHHHhCCce-----ee-cCCCCCCccccccccCCCCCCCccccCccccce-----e--eeEEEccCCceecccCCC
Q 009485 158 ELYYRIYEKSNIH-----GF-PAGLCTSLGIGGHITGGAYGSMMRKYGIGADNV-----L--DARIVDARGRVLDRAAMG 224 (533)
Q Consensus 158 ~l~~~l~~~g~~~-----~~-~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v-----~--~~~vV~~~G~~~~~~~~~ 224 (533)
++.+.+.++=..+ .+ ....-+..+|||++..+.- .+|.. + .+++..++|+... +-
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~v-pl-- 333 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTL-PL-- 333 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEE-eH--
Confidence 9987554431000 01 1234466779999854321 24533 3 3445555664221 11
Q ss_pred cchHHHhhcCCCCceeEEEEEEEE
Q 009485 225 EDLFWAIRGGGGASFGIILAWKVK 248 (533)
Q Consensus 225 ~dl~~a~rg~~~g~~GiVt~~~l~ 248 (533)
.|+|-.++--.-..--||+++.+.
T Consensus 334 ~dF~~g~~kt~L~~~EiI~~I~iP 357 (467)
T TIGR02963 334 EDFFIDYGKTDRQPGEFVEALHVP 357 (467)
T ss_pred HHhhcccccccCCCCceEEEEEec
Confidence 255544432111122499999875
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.30 E-value=0.055 Score=50.33 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=51.6
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHH
Q 009485 80 PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGE 158 (533)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 158 (533)
+..++.|+|.+|+.++++ .+-...+.+||++..-.- ..+......+||++++... .|..+++.+++||++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~-~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQM-REGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHH-HTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhc-ccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 346799999999999998 333678889998853110 0100113589999876443 3434468999999999999
Q ss_pred HHHH
Q 009485 159 LYYR 162 (533)
Q Consensus 159 l~~~ 162 (533)
+.+.
T Consensus 77 l~~~ 80 (171)
T PF00941_consen 77 LEES 80 (171)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9876
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.02 E-value=0.078 Score=52.68 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=81.5
Q ss_pred EEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHHH
Q 009485 83 IFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELYY 161 (533)
Q Consensus 83 vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~ 161 (533)
++.|+|.+|+.++++ +++-.-.+.+||+++.-.-. . ....++||++++ .. .|..+++.+++||++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~--~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-R--TDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-c--cCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 578999999998766 33323567899999742111 1 123588999875 43 3444567999999999999875
Q ss_pred H------HHHhCCceeecCCCCCCccccccccCCCCCCCccccCccccc-----eeeeEEEccCCceecccCCCcchHHH
Q 009485 162 R------IYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADN-----VLDARIVDARGRVLDRAAMGEDLFWA 230 (533)
Q Consensus 162 ~------l~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~-----v~~~~vV~~~G~~~~~~~~~~dl~~a 230 (533)
. |.+.- ...-.+..-+..++||++..+.- .+|. .+..+|+..+++.+.. .|+|
T Consensus 77 ~~~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~-- 140 (257)
T TIGR03312 77 NELTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYL-- 140 (257)
T ss_pred CcchHHHHHHHH-HHhCCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhc--
Confidence 2 22211 01011244466779999854321 2343 2556666655543321 1443
Q ss_pred hhcCCCCceeEEEEEEEE
Q 009485 231 IRGGGGASFGIILAWKVK 248 (533)
Q Consensus 231 ~rg~~~g~~GiVt~~~l~ 248 (533)
.|.. + -+||++.+.
T Consensus 141 -~g~~-~--Ell~~V~iP 154 (257)
T TIGR03312 141 -ASEQ-R--ELIVEVIIP 154 (257)
T ss_pred -CCCC-C--cEEEEEEcC
Confidence 2221 2 488888764
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=94.70 E-value=0.11 Score=51.73 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=84.6
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHH
Q 009485 82 FIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELY 160 (533)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 160 (533)
-++.|+|.+|+.++++ +++-...+.+||++..-.. .. ....++||++++ .. .+..+++.+++||++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~--~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TR--TDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CC--CCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 4689999999998876 3433467899999974211 11 124689999975 44 444566899999999999998
Q ss_pred HHH------HHhCCceeecCCCCCCccccccccCCCCCCCccccCccccc-----eeeeEEEccCCceecccCCCcchHH
Q 009485 161 YRI------YEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADN-----VLDARIVDARGRVLDRAAMGEDLFW 229 (533)
Q Consensus 161 ~~l------~~~g~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~-----v~~~~vV~~~G~~~~~~~~~~dl~~ 229 (533)
+.. .+.- ...-.+..-+..+|||++..+-- .+|. .+..+|+..+++.+.. .|+|
T Consensus 77 ~~~~~~~~L~~a~-~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~- 141 (258)
T PRK09799 77 DARFIPAALREAL-GFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL- 141 (258)
T ss_pred hCcccHHHHHHHH-HHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc-
Confidence 632 1110 00001233456778998854321 2443 2566777777654421 1433
Q ss_pred HhhcCCCCceeEEEEEEEE
Q 009485 230 AIRGGGGASFGIILAWKVK 248 (533)
Q Consensus 230 a~rg~~~g~~GiVt~~~l~ 248 (533)
.|.. -.|||++.+.
T Consensus 142 --~g~~---~Eil~~I~iP 155 (258)
T PRK09799 142 --ACPC---DRLLTEIIIP 155 (258)
T ss_pred --CCCC---CcEEEEEEcC
Confidence 3222 2599988764
No 38
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.52 E-value=0.12 Score=52.43 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=84.5
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCC-CccccCCCCCeEEEEcCCCCcE-EEe-CCCCEEEEcCCCcHHH
Q 009485 82 FIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEG-LSYASEIETPFIVVDLARLRSV-NVD-INQNTAWVQAGATVGE 158 (533)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~s~~~~g~~~gvvIdl~~~~~i-~~d-~~~~~v~v~aG~~~~~ 158 (533)
-++.|+|.+|..++++. +. ...+.+||+++.. ..... .....+||++++... .|. .+++.+++||++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~--~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHN--DRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCC--CCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 57899999999988763 22 3578999998631 11111 124689999876543 333 2346799999999999
Q ss_pred HHHH--HHHhC------CceeecCCCCCCccccccccCCCCCCCccccCccccce-----e--eeEEEccCCceecccCC
Q 009485 159 LYYR--IYEKS------NIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNV-----L--DARIVDARGRVLDRAAM 223 (533)
Q Consensus 159 l~~~--l~~~g------~~~~~~~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v-----~--~~~vV~~~G~~~~~~~~ 223 (533)
+.+. +.++- ....-.+..-+..++||++..+.. .+|.+ + .+++..++|+.. .+-
T Consensus 80 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p---------~sD~~~~Llal~A~v~i~~~~g~R~-vp~- 148 (291)
T PRK09971 80 IIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGAT---------SADSAPPLFALDAKLEIHSPNGVRF-VPI- 148 (291)
T ss_pred HhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCc---------chhHHHHHHHcCCEEEEEcCCCcEE-EEH-
Confidence 9851 11110 000011244467779999864321 24543 3 344445567422 111
Q ss_pred CcchHHHhhcCCCCceeEEEEEEEEEEe
Q 009485 224 GEDLFWAIRGGGGASFGIILAWKVKLVP 251 (533)
Q Consensus 224 ~~dl~~a~rg~~~g~~GiVt~~~l~~~~ 251 (533)
.|+|-+.+--.-..--+||++.+...+
T Consensus 149 -~df~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 149 -NGFYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred -HHhcCCccccccCCCceEEEEEeCCCC
Confidence 255533221000122499999876433
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=93.90 E-value=0.027 Score=56.17 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=25.1
Q ss_pred hhhhhhhhccccHHHHHHhhhccCCCCccccCCCC
Q 009485 494 ARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSI 528 (533)
Q Consensus 494 ~~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~qsI 528 (533)
.++|.+ -||+.|+|+++.|++|||.+++.--|.|
T Consensus 247 ~~dW~~-HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 247 QEDWRR-HFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHHHH-HHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHHHH-HhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 348975 5699999999999999999999888877
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.01 E-value=0.78 Score=47.02 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=62.2
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHH
Q 009485 82 FIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELY 160 (533)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 160 (533)
-++.|+|.+|..++++- ++ .-.+.+||+++.... ..+-.....+||++++..+ .|..+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~-~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNL-RRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHH-hcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 57899999999988763 22 346799999863111 1100123688999875443 233456789999999999986
Q ss_pred HH---------HHHhCCceeecCCCCCCccccccccC
Q 009485 161 YR---------IYEKSNIHGFPAGLCTSLGIGGHITG 188 (533)
Q Consensus 161 ~~---------l~~~g~~~~~~~G~~~~vgvgG~~~g 188 (533)
+. |.+.- ...-.+..-+..+|||++.+
T Consensus 81 ~~~~i~~~~p~L~~a~-~~ias~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 81 EDALVRTRWPALAQAA-RAVAGPTHRAAATLGGNLCL 116 (321)
T ss_pred hChhhHhHhHHHHHHH-HHhCCHHHhCceecHHhhhc
Confidence 52 11110 00001233466779999975
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=89.40 E-value=1 Score=44.21 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.8
Q ss_pred hhhhhccccHHHHHHhhhccCCCCccccC
Q 009485 497 WGVKYFKNNFYRLVRVKTKVDPGNFFRHE 525 (533)
Q Consensus 497 ~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 525 (533)
....| .++++-.+||+++||+|+|.++
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 44455 6899999999999999999875
No 42
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=89.22 E-value=1.2 Score=45.70 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=84.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHH
Q 009485 80 PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGE 158 (533)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 158 (533)
-..++.|.+.+|...++.. +-..++..|++++.-.....- .+-..||-...+..+ +++...+.++++||+++.|
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~m-r~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQM-RDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHH-hhcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 4468899999999987652 445667778887632211110 011245555555544 4555678999999999999
Q ss_pred HHHHHHHhCCcee--e--cCC--CCCCccccccccCCCCCCCccccCcc--ccceeeeEEEccCCceec-ccCCCcchHH
Q 009485 159 LYYRIYEKSNIHG--F--PAG--LCTSLGIGGHITGGAYGSMMRKYGIG--ADNVLDARIVDARGRVLD-RAAMGEDLFW 229 (533)
Q Consensus 159 l~~~l~~~g~~~~--~--~~G--~~~~vgvgG~~~ggg~g~~~~~~G~~--~d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 229 (533)
.++.|.++=-.+. + .+| .-+.-++||++..|.- -|.+ .=..++.++++-.|+-.+ .+- .|+|-
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~RtlPL--e~~Fi 349 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRTLPL--EDYFI 349 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCcccccH--HHHHH
Confidence 9999987621100 0 011 2245568888855431 1222 123478888887776554 332 37888
Q ss_pred Hhh
Q 009485 230 AIR 232 (533)
Q Consensus 230 a~r 232 (533)
+|+
T Consensus 350 ~Y~ 352 (493)
T COG4630 350 AYG 352 (493)
T ss_pred Hhh
Confidence 885
No 43
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=88.06 E-value=0.91 Score=43.95 Aligned_cols=65 Identities=9% Similarity=0.136 Sum_probs=38.6
Q ss_pred ChhHHHHHHHHHHHHHHhccccccCCCCccccccCCCccCCCCCCCcchhhhhhhhhhhccc-cHHHHHHhhhccCCCCc
Q 009485 443 GEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKN-NFYRLVRVKTKVDPGNF 521 (533)
Q Consensus 443 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~g~YvNy~d~~~~~~~~~~~~~~~~~~~~~~yyG~-n~~RL~~IK~kyDP~nv 521 (533)
++++.++..++++.+++.+..+. |+-.- .+.. + .....|-..++|+ .+.-+++||+.+||+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~g-----G~is~-eHG~-G---------~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~i 242 (248)
T PF02913_consen 179 DPEEPERAEALWDELYELVLELG-----GSISA-EHGI-G---------KLKKPYLEEEYGPAALRLMRAIKQAFDPNGI 242 (248)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT------BBSS-SSGG-G---------HHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc-----ccccc-ccch-h---------hhhHHHHHHhcchHHHHHHHHhhhccCCccC
Confidence 45666777788888876665441 22111 1111 1 1122455566775 79999999999999999
Q ss_pred cc
Q 009485 522 FR 523 (533)
Q Consensus 522 F~ 523 (533)
++
T Consensus 243 lN 244 (248)
T PF02913_consen 243 LN 244 (248)
T ss_dssp BS
T ss_pred CC
Confidence 85
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=88.00 E-value=1.1 Score=44.59 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccC-CCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHHHHH-
Q 009485 86 PLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASE-IETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGELYYR- 162 (533)
Q Consensus 86 p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~-g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~- 162 (533)
|+|.+|+.++++-. . ...+.+||+++.-.- ..+ -.....+||++++... .|+.+++.+++||++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~-~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQW-EKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHH-hcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 78888888888742 2 357899999863110 110 0114588999987654 45556789999999999999642
Q ss_pred --------HHHhCCceeecCCCCCCccccccccCC
Q 009485 163 --------IYEKSNIHGFPAGLCTSLGIGGHITGG 189 (533)
Q Consensus 163 --------l~~~g~~~~~~~G~~~~vgvgG~~~gg 189 (533)
|.++- ...-.+..-+..++||++..+
T Consensus 76 ~i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 76 LIKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 11110 000012344677899999654
No 45
>PLN02906 xanthine dehydrogenase
Probab=83.97 E-value=2.1 Score=52.30 Aligned_cols=79 Identities=8% Similarity=0.078 Sum_probs=54.9
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCc-cccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHH
Q 009485 81 EFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLS-YASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGE 158 (533)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s-~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 158 (533)
.-++.|+|.+|+.++++-. . .-++.+||+++.-.- ... ....++||++++..+ .|..++..+++||++++.+
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~--~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~e 302 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKN--AQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSE 302 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhcc--CCCCeEEECCCChhhhcEEecCCEEEEecCCcHHH
Confidence 4589999999999876642 1 246789999973211 111 124689999876554 3444567899999999999
Q ss_pred HHHHHHH
Q 009485 159 LYYRIYE 165 (533)
Q Consensus 159 l~~~l~~ 165 (533)
+.+.|.+
T Consensus 303 l~~~l~~ 309 (1319)
T PLN02906 303 LQNLFRK 309 (1319)
T ss_pred HHHHHHH
Confidence 9986444
No 46
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=82.92 E-value=2.2 Score=42.19 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=19.4
Q ss_pred hhhhhhccccHHHHHHhhhccCCCCccccC
Q 009485 496 IWGVKYFKNNFYRLVRVKTKVDPGNFFRHE 525 (533)
Q Consensus 496 ~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 525 (533)
.....| .++++..++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344555 8999999999999999999764
No 47
>PLN00192 aldehyde oxidase
Probab=79.46 E-value=4.6 Score=49.55 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=67.4
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHH
Q 009485 80 PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGE 158 (533)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 158 (533)
..-++.|+|.+|+.+++......+-...+..||+++.-.- .. ....++||++++..+ .|..+++.+++||++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k-~~--~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYK-DE--ELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeee-cc--CCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 4468999999999988764210012366788999863211 11 124689999876554 3444567899999999999
Q ss_pred HHHHHHHhCCc---ee--------ec-CCCCCCccccccccCC
Q 009485 159 LYYRIYEKSNI---HG--------FP-AGLCTSLGIGGHITGG 189 (533)
Q Consensus 159 l~~~l~~~g~~---~~--------~~-~G~~~~vgvgG~~~gg 189 (533)
+.+.+.+.... +. +. ...-+..+|||++..+
T Consensus 310 l~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 310 AIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 98765543100 00 11 2344566789998543
No 48
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=78.85 E-value=6.3 Score=48.33 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=54.8
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEcCCCcHHHH
Q 009485 81 EFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV-NVDINQNTAWVQAGATVGEL 159 (533)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l 159 (533)
.-.+.|+|.+|+.++++. +. .-++..||+++.-.- .........+||++++..+ .+..+++.+++||++++.++
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~-k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el 311 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEV-KFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQV 311 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHh-hhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHH
Confidence 468999999999988764 22 356789999973211 0100123489999876554 34445678999999999999
Q ss_pred HHHHH
Q 009485 160 YYRIY 164 (533)
Q Consensus 160 ~~~l~ 164 (533)
.+.|.
T Consensus 312 ~~~l~ 316 (1330)
T TIGR02969 312 KDILA 316 (1330)
T ss_pred HHHHH
Confidence 88644
No 49
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=76.51 E-value=3 Score=44.40 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.1
Q ss_pred hhhhhhccc-cHHHHHHhhhccCCCCccc
Q 009485 496 IWGVKYFKN-NFYRLVRVKTKVDPGNFFR 523 (533)
Q Consensus 496 ~~~~~yyG~-n~~RL~~IK~kyDP~nvF~ 523 (533)
.|....||+ .++-+++||+.+||+|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 577777774 7999999999999999986
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=72.45 E-value=11 Score=37.90 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=53.3
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc-E-EEeCCCCEEEEcCCCcHH
Q 009485 80 PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS-V-NVDINQNTAWVQAGATVG 157 (533)
Q Consensus 80 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~-i-~~d~~~~~v~v~aG~~~~ 157 (533)
+..+.+|.|.+|...+++ +.+ --.+.+|||++...--.. -....-+||++++.. . .+..+++.+++||-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~-~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLG-IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcc-cCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 556789999998888776 444 677889999976321110 012457899987742 2 333457789999999999
Q ss_pred HHHH
Q 009485 158 ELYY 161 (533)
Q Consensus 158 ~l~~ 161 (533)
++.+
T Consensus 78 ei~~ 81 (284)
T COG1319 78 EIAR 81 (284)
T ss_pred HHHh
Confidence 9963
No 51
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=65.27 E-value=9.9 Score=42.14 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=23.8
Q ss_pred hhhhhhccccHHHHHHhhhccCCCCccccCC
Q 009485 496 IWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQ 526 (533)
Q Consensus 496 ~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~q 526 (533)
+..+.| .++++.++||+++||+|+|.++.
T Consensus 476 ~l~~~Y--P~~~dF~alR~~~DP~g~F~N~y 504 (557)
T TIGR01677 476 GVIRKY--PNADKFLKVKDSYDPKGLFSSEW 504 (557)
T ss_pred HHHHhC--CCHHHHHHHHHhcCCCCccCCHH
Confidence 344555 59999999999999999998763
No 52
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=51.70 E-value=46 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=31.3
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCeEEEEeC-CcCCCCC
Q 009485 82 FIFTPLYESHVQAAVICSKRLGIHLRVRSG-GHDYEGL 118 (533)
Q Consensus 82 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~gg-Gh~~~g~ 118 (533)
+=+.|+..+.+...+.+++.+++||.+... |+.+.+.
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~my 45 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMY 45 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEE
Confidence 347899999999999999999999998875 7776543
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=51.37 E-value=40 Score=36.72 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=50.0
Q ss_pred hHHHHhccCcCCCCCCCcceEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcC-CeEEEE
Q 009485 31 TFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLG-IHLRVR 109 (533)
Q Consensus 31 ~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~-~~~~~~ 109 (533)
.|.+-.++.+ .+|.+.++.-+=|+-+.+.. +...+ .....|-.+++|.|+++|..+++.|.++- .||.++
T Consensus 112 rLv~kara~G----~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 112 RLVQKARASG----APIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred HHHHHHHhcC----CCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 3556665554 35799999988888887743 11111 12357889999999999999999999974 466653
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.30 E-value=26 Score=35.73 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=40.7
Q ss_pred eEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCC------HHHHHHHHHHHHhc------CCeEEEEeCCc
Q 009485 50 YFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLY------ESHVQAAVICSKRL------GIHLRVRSGGH 113 (533)
Q Consensus 50 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~dv~~~v~~a~~~------~~~~~~~ggGh 113 (533)
.|..|+...|.+.+.. -+.||. ....+++|.. +++|..+++.+.+. .+=|.+||||+
T Consensus 19 vITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 19 VITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3445777888888653 244664 4567777765 57999999999865 46788888885
No 55
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=46.46 E-value=10 Score=40.19 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=19.3
Q ss_pred ccHHHHHHhhhccCCCCcccc
Q 009485 504 NNFYRLVRVKTKVDPGNFFRH 524 (533)
Q Consensus 504 ~n~~RL~~IK~kyDP~nvF~~ 524 (533)
.|.++-.++|+++||.++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 799999999999999999943
No 56
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=41.32 E-value=88 Score=31.12 Aligned_cols=108 Identities=15% Similarity=0.036 Sum_probs=66.9
Q ss_pred cchhhhHHHHhccCcCCCCCCCcceEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCe
Q 009485 26 YSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIH 105 (533)
Q Consensus 26 ~~~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~ 105 (533)
..+.++..+-|+... .+ ...|++|+-++...+.. . ...+|.+|+.++-+...+.|.+
T Consensus 115 ~Ll~~~a~~~l~~~L-lP----~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~ 171 (263)
T COG0351 115 PLLDEEAVEALREEL-LP----LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAK 171 (263)
T ss_pred cccChHHHHHHHHHh-hc----cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCC
Confidence 344455555555443 22 35889999988887632 1 3789999999999999999999
Q ss_pred EEEEeCCcCCCCCccccCCCCCeEEEEcCCCCcE---EEeCCCCEEEEcCCCcHHHHHHHHHHhC
Q 009485 106 LRVRSGGHDYEGLSYASEIETPFIVVDLARLRSV---NVDINQNTAWVQAGATVGELYYRIYEKS 167 (533)
Q Consensus 106 ~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i---~~d~~~~~v~v~aG~~~~~l~~~l~~~g 167 (533)
-++.=|||... ... .++.|-..+..+ .++. .=+=|.||++.-....-..+|
T Consensus 172 ~VliKGGH~~~---~~~-----D~l~~~~~~~~f~~~ri~t---~~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 172 AVLIKGGHLEG---EAV-----DVLYDGGSFYTFEAPRIPT---KNTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEEEcCCCCCC---Cce-----eEEEcCCceEEEeccccCC---CCCCCccHHHHHHHHHHHHcC
Confidence 88888899764 111 144443312111 1211 113578999876665544444
No 57
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=39.12 E-value=33 Score=36.82 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=41.3
Q ss_pred EECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCH------HHHHHHHHHHHhc--CCeEEEEeCCc
Q 009485 51 FYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYE------SHVQAAVICSKRL--GIHLRVRSGGH 113 (533)
Q Consensus 51 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~------~dv~~~v~~a~~~--~~~~~~~ggGh 113 (533)
|..|+...+.+.+. .-+.||. .-...++|..+ .+|.++++.+.+. ++=|.+||||+
T Consensus 141 iTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 141 ITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 44567778888876 3456775 24577777766 7999999988874 77888999993
No 58
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=38.99 E-value=18 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.4
Q ss_pred HHHHHHhhhccCCCCccc
Q 009485 506 FYRLVRVKTKVDPGNFFR 523 (533)
Q Consensus 506 ~~RL~~IK~kyDP~nvF~ 523 (533)
.+-.++||++|||+++|+
T Consensus 327 ~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 327 LRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred HHHHHHHHHhcCcccCCC
Confidence 678899999999999996
No 59
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.91 E-value=40 Score=31.40 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=30.7
Q ss_pred cccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEE
Q 009485 70 LRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLR 107 (533)
Q Consensus 70 ~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~ 107 (533)
.||-. ..+|..||++.+++++.++.+.|++.+++..
T Consensus 117 ~~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~ 152 (190)
T KOG3282|consen 117 RRWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTH 152 (190)
T ss_pred HHHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 46865 5689999999999999999999999887543
No 60
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=32.35 E-value=82 Score=27.07 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=32.8
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeE-EEEeCCcC
Q 009485 72 YLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHL-RVRSGGHD 114 (533)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~-~~~ggGh~ 114 (533)
|.. ...+..|+++.|++|+.++.+-|.+.+++. .++-.|+.
T Consensus 42 W~~--~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 42 WLN--EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHH--CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 644 458999999999999999999999998874 45555554
No 61
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=32.13 E-value=2.8e+02 Score=29.53 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=32.2
Q ss_pred CccEEEecCCHHHHHHHHHHHHhcCCeEEEEeCC
Q 009485 79 KPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGG 112 (533)
Q Consensus 79 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggG 112 (533)
....|+.|+-.|-...+.+.|.++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5679999999999999999999999999999999
No 62
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=26.06 E-value=96 Score=27.97 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=26.0
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCeEEEE
Q 009485 81 EFIFTPLYESHVQAAVICSKRLGIHLRVR 109 (533)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ 109 (533)
..|+.|.+.+|+..++++|-+.+-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999888788877
No 63
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.87 E-value=46 Score=35.73 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=38.9
Q ss_pred eEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCC------HHHHHHHHHHHHh---cCCeEEEEeCCc
Q 009485 50 YFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLY------ESHVQAAVICSKR---LGIHLRVRSGGH 113 (533)
Q Consensus 50 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~dv~~~v~~a~~---~~~~~~~~ggGh 113 (533)
.|..|+...+.+.+. .-+.||.. -..+++|.. +.+|.++++.+.+ .++=|.+||||+
T Consensus 134 vits~~~aa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 134 VITSQTGAALADILH--ILKRRDPS-----LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EEeCCccHHHHHHHH--HHHhhCCC-----ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 344577788888865 33567742 345566654 4799999998876 356788888885
No 64
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.83 E-value=42 Score=35.81 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=38.6
Q ss_pred eEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCH------HHHHHHHHHHHhcC---CeEEEEeCCc
Q 009485 50 YFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYE------SHVQAAVICSKRLG---IHLRVRSGGH 113 (533)
Q Consensus 50 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~------~dv~~~v~~a~~~~---~~~~~~ggGh 113 (533)
.|..|......+.+. .-..||. .-..+++|..+ ++|.++|+.|++.+ +=|+.||||+
T Consensus 140 VITS~tgAairDIl~--~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 140 VITSPTGAALRDILH--TLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred EEcCCchHHHHHHHH--HHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 344566667777654 3356775 24567777654 79999999999976 4566677774
No 65
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=24.57 E-value=81 Score=29.66 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCeEEEEeCCcCCC
Q 009485 93 QAAVICSKRLGIHLRVRSGGHDYE 116 (533)
Q Consensus 93 ~~~v~~a~~~~~~~~~~ggGh~~~ 116 (533)
.+.++|++++++|+.|.++|.++-
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchH
Confidence 467889999999999999999864
No 66
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=24.30 E-value=48 Score=36.87 Aligned_cols=28 Identities=7% Similarity=0.280 Sum_probs=23.1
Q ss_pred hhhhhhhccccHHHHHHhhhccCCCCccccC
Q 009485 495 RIWGVKYFKNNFYRLVRVKTKVDPGNFFRHE 525 (533)
Q Consensus 495 ~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 525 (533)
+++...| . +++..++++++||+|+|.++
T Consensus 537 ~~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 537 ERLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 3555555 4 99999999999999999875
No 67
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=24.10 E-value=1.5e+02 Score=25.61 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=28.5
Q ss_pred CccEEEecCCHHHHHHHHHHHHhcCCeEEEE
Q 009485 79 KPEFIFTPLYESHVQAAVICSKRLGIHLRVR 109 (533)
Q Consensus 79 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ 109 (533)
....|++..+++|+.++-+-|++.+++..++
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 8999999999999999999999999886664
No 68
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=23.24 E-value=1.2e+02 Score=27.89 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=26.6
Q ss_pred cEEEecCCHHHHHHHHHHHHh--cCCeEEEEeCC
Q 009485 81 EFIFTPLYESHVQAAVICSKR--LGIHLRVRSGG 112 (533)
Q Consensus 81 ~~vv~p~s~~dv~~~v~~a~~--~~~~~~~~ggG 112 (533)
..|+.|.+.+|+..+++++-+ .+-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 578999999999999999999 66788887543
No 69
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=23.16 E-value=44 Score=36.85 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=21.2
Q ss_pred hhhhhccccHHHHHHhhhccCCCCccccC
Q 009485 497 WGVKYFKNNFYRLVRVKTKVDPGNFFRHE 525 (533)
Q Consensus 497 ~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 525 (533)
|...| . +++-.++++++||+|+|.++
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 55444 3 78889999999999999875
No 70
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=23.02 E-value=1.4e+02 Score=25.75 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=32.7
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCe-EEEEeCCcC
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIH-LRVRSGGHD 114 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~-~~~~ggGh~ 114 (533)
+|.. ...+..|+.+.+++|+.++.+.|.+.+++ ..++=.|+.
T Consensus 43 ~W~~--~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~T 85 (115)
T cd02407 43 AWEL--EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRT 85 (115)
T ss_pred HHHh--CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 3654 45899999999999999999999998876 344445543
No 71
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=22.57 E-value=42 Score=21.28 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=9.9
Q ss_pred ccHHHHHHhhhc
Q 009485 504 NNFYRLVRVKTK 515 (533)
Q Consensus 504 ~n~~RL~~IK~k 515 (533)
+-|+||++||.-
T Consensus 11 eFY~rlk~Ike~ 22 (28)
T PF12108_consen 11 EFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 579999999963
No 72
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=22.14 E-value=76 Score=34.18 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEE--eCCcCC
Q 009485 87 LYESHVQAAVICSKRLGIHLRVR--SGGHDY 115 (533)
Q Consensus 87 ~s~~dv~~~v~~a~~~~~~~~~~--ggGh~~ 115 (533)
-|.+||+++|++|+.+||+|.+- .-||.-
T Consensus 247 YT~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 247 YTREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred ecHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 47799999999999999999875 346653
No 73
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.09 E-value=53 Score=18.46 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=3.4
Q ss_pred HHHhccccc
Q 009485 15 VFLLSASCT 23 (533)
Q Consensus 15 ~~~~~~~~~ 23 (533)
.+++..|.+
T Consensus 9 vvLLliSf~ 17 (19)
T PF13956_consen 9 VVLLLISFP 17 (19)
T ss_pred HHHHhcccc
Confidence 333334433
No 74
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.96 E-value=59 Score=28.52 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHHh
Q 009485 4 FAGIYVLSIASVFLL 18 (533)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (533)
|+.|++++|++|+++
T Consensus 5 ~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 5 FAIIIVAILLFLFLF 19 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 75
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.24 E-value=90 Score=32.15 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEe--CCcC
Q 009485 87 LYESHVQAAVICSKRLGIHLRVRS--GGHD 114 (533)
Q Consensus 87 ~s~~dv~~~v~~a~~~~~~~~~~g--gGh~ 114 (533)
-|.+|++++|++|++++|.|.+-= -||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 489999999999999999988753 3665
No 76
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=21.00 E-value=1.5e+02 Score=25.48 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=32.0
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEE-EEeCCc
Q 009485 71 RYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLR-VRSGGH 113 (533)
Q Consensus 71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~-~~ggGh 113 (533)
+|.. ...+..|+...+++|+.++.+.|.+.+++.. ++=.|+
T Consensus 43 ~W~~--~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T cd02430 43 AWER--EGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGR 84 (115)
T ss_pred HHHh--cCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 3754 3478899999999999999999999998744 444454
No 77
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.66 E-value=95 Score=31.48 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEE--eCCcC
Q 009485 86 PLYESHVQAAVICSKRLGIHLRVR--SGGHD 114 (533)
Q Consensus 86 p~s~~dv~~~v~~a~~~~~~~~~~--ggGh~ 114 (533)
.-|.+|++++|++|+++||.|.+- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 458899999999999999998874 23665
No 78
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=20.28 E-value=2.1e+02 Score=24.48 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=33.5
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeE-EEEeCCcCC
Q 009485 72 YLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHL-RVRSGGHDY 115 (533)
Q Consensus 72 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~-~~~ggGh~~ 115 (533)
|.. ...+..|+...|++++.++.+.|.+.+++. .++-.|+.-
T Consensus 45 W~~--~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~Te 87 (116)
T PF01981_consen 45 WEN--NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRTE 87 (116)
T ss_dssp HHH--TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSS
T ss_pred Hhc--CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCCc
Confidence 553 357899999999999999999999999985 456677663
Done!