Query 009486
Match_columns 533
No_of_seqs 258 out of 1567
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 13:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02935 Bifunctional NADH kin 100.0 5E-151 1E-155 1204.4 51.5 506 22-532 1-507 (508)
2 KOG2178 Predicted sugar kinase 100.0 5.5E-77 1.2E-81 614.2 28.9 319 207-527 83-409 (409)
3 PLN02727 NAD kinase 100.0 9E-76 1.9E-80 654.1 37.0 322 200-527 660-986 (986)
4 PRK02649 ppnK inorganic polyph 100.0 9.5E-74 2.1E-78 585.1 36.0 299 218-528 1-301 (305)
5 PRK04539 ppnK inorganic polyph 100.0 1.9E-73 4.1E-78 580.9 33.7 292 214-522 1-295 (296)
6 PRK01911 ppnK inorganic polyph 100.0 1.3E-72 2.9E-77 573.7 35.8 291 220-524 2-292 (292)
7 PRK14077 pnk inorganic polypho 100.0 3.6E-72 7.8E-77 569.3 34.4 277 218-519 10-286 (287)
8 PRK03378 ppnK inorganic polyph 100.0 1.3E-71 2.7E-76 566.6 36.1 289 215-521 2-290 (292)
9 PRK03372 ppnK inorganic polyph 100.0 1.6E-71 3.6E-76 568.8 36.7 296 216-523 3-301 (306)
10 PRK01231 ppnK inorganic polyph 100.0 7.9E-70 1.7E-74 554.1 36.2 289 218-523 4-292 (295)
11 PRK02155 ppnK NAD(+)/NADH kina 100.0 3.6E-69 7.7E-74 548.3 35.3 288 215-521 2-289 (291)
12 PRK02231 ppnK inorganic polyph 100.0 4.1E-69 8.9E-74 543.2 32.6 269 236-521 2-271 (272)
13 PRK01185 ppnK inorganic polyph 100.0 3.2E-67 7E-72 529.2 32.8 265 220-517 2-266 (271)
14 PRK02645 ppnK inorganic polyph 100.0 1.1E-66 2.4E-71 533.1 35.6 294 217-526 2-300 (305)
15 PRK14076 pnk inorganic polypho 100.0 3.3E-66 7.1E-71 567.8 34.9 288 210-519 282-569 (569)
16 PRK03501 ppnK inorganic polyph 100.0 1.7E-65 3.8E-70 514.9 33.5 255 218-516 2-263 (264)
17 PRK03708 ppnK inorganic polyph 100.0 3.3E-65 7.2E-70 516.1 33.7 274 220-519 2-276 (277)
18 COG0061 nadF NAD kinase [Coenz 100.0 4.6E-65 1E-69 515.6 34.3 281 219-520 1-281 (281)
19 PRK04885 ppnK inorganic polyph 100.0 3.5E-63 7.6E-68 498.6 32.4 251 220-517 2-261 (265)
20 PRK14075 pnk inorganic polypho 100.0 1.7E-61 3.6E-66 484.1 32.9 254 220-522 2-255 (256)
21 PRK00561 ppnK inorganic polyph 100.0 2E-60 4.3E-65 476.9 31.8 245 220-516 2-255 (259)
22 PF01513 NAD_kinase: ATP-NAD k 100.0 2E-60 4.4E-65 481.3 25.0 274 220-500 1-284 (285)
23 PRK04761 ppnK inorganic polyph 100.0 2.9E-54 6.2E-59 429.6 27.2 214 285-514 24-241 (246)
24 PLN02929 NADH kinase 100.0 7.7E-54 1.7E-58 436.6 29.1 233 233-500 33-295 (301)
25 KOG4180 Predicted kinase [Gene 99.8 8.1E-21 1.8E-25 193.2 13.1 213 281-494 100-386 (395)
26 TIGR00147 lipid kinase, YegS/R 99.2 2.1E-09 4.6E-14 108.8 23.9 113 218-345 1-120 (293)
27 PRK13057 putative lipid kinase 98.5 1.6E-05 3.5E-10 80.8 21.5 108 223-345 2-111 (287)
28 PRK00861 putative lipid kinase 98.2 0.0014 3E-08 67.2 26.9 111 218-345 2-118 (300)
29 PRK12361 hypothetical protein; 98.1 0.001 2.2E-08 73.9 26.4 240 218-500 242-540 (547)
30 PRK13059 putative lipid kinase 98.0 0.0013 2.8E-08 67.4 23.1 112 218-345 1-119 (295)
31 PRK13337 putative lipid kinase 98.0 0.00095 2.1E-08 68.6 21.4 111 218-344 1-119 (304)
32 PRK13055 putative lipid kinase 98.0 0.0013 2.8E-08 68.8 21.6 110 218-345 2-123 (334)
33 COG3199 Predicted inorganic po 97.8 0.00012 2.5E-09 77.0 11.1 69 285-354 99-169 (355)
34 PRK11914 diacylglycerol kinase 97.8 0.00039 8.5E-09 71.3 14.6 113 217-345 7-126 (306)
35 PRK13054 lipid kinase; Reviewe 97.3 0.0022 4.9E-08 65.8 12.3 110 217-345 2-121 (300)
36 COG1597 LCB5 Sphingosine kinas 97.3 0.048 1E-06 56.7 21.4 110 218-345 2-121 (301)
37 PF00781 DAGK_cat: Diacylglyce 97.2 0.002 4.3E-08 58.0 8.8 89 220-322 1-94 (130)
38 TIGR03702 lip_kinase_YegS lipi 96.9 0.0076 1.7E-07 61.7 11.0 107 220-345 1-117 (293)
39 PLN02958 diacylglycerol kinase 96.8 0.016 3.5E-07 64.0 13.0 120 212-345 105-240 (481)
40 smart00046 DAGKc Diacylglycero 96.2 0.02 4.2E-07 51.7 7.9 36 285-320 48-88 (124)
41 PLN02204 diacylglycerol kinase 95.3 0.19 4.1E-06 57.1 12.7 77 216-306 157-238 (601)
42 PLN02884 6-phosphofructokinase 93.7 0.51 1.1E-05 51.5 11.0 134 204-340 39-210 (411)
43 PTZ00286 6-phospho-1-fructokin 91.2 1.7 3.7E-05 48.1 11.2 137 202-340 71-243 (459)
44 TIGR02482 PFKA_ATP 6-phosphofr 91.1 0.29 6.2E-06 51.3 4.8 54 285-340 90-153 (301)
45 PRK06830 diphosphate--fructose 91.0 1.6 3.5E-05 48.1 10.7 136 203-340 65-239 (443)
46 PRK14071 6-phosphofructokinase 90.1 0.42 9E-06 51.2 5.1 55 285-341 106-170 (360)
47 KOG4435 Predicted lipid kinase 89.4 1.6 3.5E-05 47.5 8.6 87 283-378 113-212 (535)
48 TIGR02483 PFK_mixed phosphofru 88.7 0.46 1E-05 50.2 4.1 54 285-341 93-156 (324)
49 cd08179 NADPH_BDH NADPH-depend 88.4 1.5 3.4E-05 46.6 7.9 77 219-307 24-101 (375)
50 cd08194 Fe-ADH6 Iron-containin 87.5 2.1 4.7E-05 45.5 8.3 88 218-318 23-130 (375)
51 PRK07765 para-aminobenzoate sy 87.2 2 4.3E-05 42.5 7.3 79 220-320 2-86 (214)
52 cd08181 PPD-like 1,3-propanedi 87.1 2.4 5.2E-05 44.9 8.4 88 219-318 26-132 (357)
53 cd08176 LPO Lactadehyde:propan 86.9 2 4.3E-05 45.8 7.6 87 219-318 29-135 (377)
54 PRK06895 putative anthranilate 86.9 1.9 4.1E-05 41.5 6.8 75 219-320 2-82 (190)
55 cd08185 Fe-ADH1 Iron-containin 86.6 3 6.5E-05 44.5 8.8 77 219-306 26-102 (380)
56 cd08187 BDH Butanol dehydrogen 86.5 2 4.4E-05 45.8 7.4 89 219-318 29-136 (382)
57 cd01743 GATase1_Anthranilate_S 86.4 1.7 3.6E-05 41.4 6.1 66 236-320 11-81 (184)
58 cd08186 Fe-ADH8 Iron-containin 86.2 2 4.4E-05 45.9 7.2 79 218-307 26-104 (383)
59 PRK06555 pyrophosphate--fructo 86.1 0.63 1.4E-05 50.7 3.4 71 285-358 111-196 (403)
60 cd08551 Fe-ADH iron-containing 86.1 3 6.5E-05 44.2 8.4 88 218-318 23-130 (370)
61 PF00465 Fe-ADH: Iron-containi 85.8 1.6 3.4E-05 46.2 6.1 77 219-307 22-98 (366)
62 PRK14072 6-phosphofructokinase 85.2 0.72 1.6E-05 50.4 3.3 53 285-339 102-169 (416)
63 cd08170 GlyDH Glycerol dehydro 85.0 2.7 5.9E-05 44.2 7.4 85 219-318 23-109 (351)
64 cd00763 Bacterial_PFK Phosphof 84.6 0.88 1.9E-05 48.0 3.5 53 285-340 91-153 (317)
65 cd08173 Gro1PDH Sn-glycerol-1- 84.5 4.5 9.7E-05 42.5 8.7 84 219-318 26-110 (339)
66 PRK06186 hypothetical protein; 84.5 2.6 5.5E-05 42.7 6.6 37 284-320 51-92 (229)
67 cd08193 HVD 5-hydroxyvalerate 84.1 3.9 8.4E-05 43.5 8.2 88 218-318 26-133 (376)
68 cd08175 G1PDH Glycerol-1-phosp 83.9 3.5 7.6E-05 43.4 7.7 88 219-318 24-112 (348)
69 cd08171 GlyDH-like2 Glycerol d 83.9 3.6 7.9E-05 43.3 7.7 96 219-328 23-122 (345)
70 PRK06774 para-aminobenzoate sy 83.6 3.1 6.7E-05 40.0 6.6 75 221-320 2-82 (191)
71 PRK09860 putative alcohol dehy 83.2 4.2 9.2E-05 43.6 8.0 77 219-307 32-108 (383)
72 CHL00101 trpG anthranilate syn 82.9 3.8 8.3E-05 39.5 6.9 75 221-320 2-82 (190)
73 PRK05670 anthranilate synthase 82.8 4.2 9E-05 39.1 7.1 75 221-320 2-82 (189)
74 PRK10586 putative oxidoreducta 82.7 6.4 0.00014 42.1 9.1 41 285-326 85-128 (362)
75 TIGR00566 trpG_papA glutamine 82.7 4.3 9.4E-05 39.1 7.2 75 221-320 2-82 (188)
76 COG0205 PfkA 6-phosphofructoki 82.4 1.1 2.3E-05 48.0 3.1 119 218-340 2-156 (347)
77 cd08177 MAR Maleylacetate redu 82.2 3.2 7E-05 43.6 6.6 84 219-318 24-109 (337)
78 PLN02564 6-phosphofructokinase 82.2 1.2 2.5E-05 49.8 3.4 137 202-340 71-243 (484)
79 cd08182 HEPD Hydroxyethylphosp 81.8 3.6 7.8E-05 43.6 6.8 74 218-307 23-97 (367)
80 PF13685 Fe-ADH_2: Iron-contai 81.5 4 8.6E-05 41.8 6.7 96 217-327 18-118 (250)
81 cd08183 Fe-ADH2 Iron-containin 81.0 6.5 0.00014 41.9 8.4 71 219-306 23-94 (374)
82 cd08549 G1PDH_related Glycerol 80.8 7.4 0.00016 40.9 8.7 86 219-318 25-112 (332)
83 cd07766 DHQ_Fe-ADH Dehydroquin 80.6 3.8 8.3E-05 42.5 6.4 86 218-318 23-112 (332)
84 PRK09423 gldA glycerol dehydro 80.6 6.7 0.00015 41.7 8.4 85 219-318 30-116 (366)
85 cd08192 Fe-ADH7 Iron-containin 80.4 4 8.6E-05 43.3 6.6 76 218-306 24-100 (370)
86 cd08191 HHD 6-hydroxyhexanoate 79.7 5.2 0.00011 42.9 7.2 76 219-307 23-99 (386)
87 PF00365 PFK: Phosphofructokin 79.7 0.81 1.8E-05 47.4 1.1 119 219-340 1-154 (282)
88 KOG1116 Sphingosine kinase, in 79.6 7.9 0.00017 44.0 8.7 89 215-320 176-277 (579)
89 TIGR01357 aroB 3-dehydroquinat 79.4 5.9 0.00013 41.6 7.4 89 218-318 20-115 (344)
90 PF04392 ABC_sub_bind: ABC tra 79.1 14 0.0003 37.7 9.8 110 218-343 131-252 (294)
91 PRK00002 aroB 3-dehydroquinate 79.0 11 0.00024 40.0 9.3 90 218-318 31-126 (358)
92 PRK00843 egsA NAD(P)-dependent 78.8 9.2 0.0002 40.5 8.6 83 219-318 35-119 (350)
93 PRK03202 6-phosphofructokinase 78.8 1.9 4.2E-05 45.5 3.6 53 285-340 92-154 (320)
94 PRK10624 L-1,2-propanediol oxi 78.1 6.9 0.00015 41.9 7.6 75 219-306 31-106 (382)
95 cd08169 DHQ-like Dehydroquinat 77.8 6.9 0.00015 41.5 7.3 91 218-318 23-117 (344)
96 cd08189 Fe-ADH5 Iron-containin 77.7 8.4 0.00018 41.1 8.0 75 219-306 27-102 (374)
97 TIGR02638 lactal_redase lactal 77.6 6.5 0.00014 42.0 7.2 77 218-306 29-105 (379)
98 PRK15454 ethanol dehydrogenase 77.4 4.6 9.9E-05 43.6 6.0 77 218-306 49-125 (395)
99 cd08178 AAD_C C-terminal alcoh 77.1 6 0.00013 42.5 6.8 76 219-307 22-98 (398)
100 cd08199 EEVS 2-epi-5-epi-valio 77.0 8.1 0.00018 41.2 7.6 91 217-318 25-122 (354)
101 COG1454 EutG Alcohol dehydroge 76.9 5.2 0.00011 43.3 6.2 78 218-307 29-106 (377)
102 cd00363 PFK Phosphofructokinas 76.7 1.8 3.9E-05 46.0 2.6 55 285-341 91-160 (338)
103 cd08195 DHQS Dehydroquinate sy 76.7 14 0.00031 38.9 9.3 90 218-318 24-119 (345)
104 PRK07053 glutamine amidotransf 76.3 7 0.00015 39.3 6.6 80 218-320 2-93 (234)
105 cd08180 PDD 1,3-propanediol de 76.3 8.2 0.00018 40.4 7.4 88 218-318 22-117 (332)
106 PRK06490 glutamine amidotransf 76.1 4 8.6E-05 41.2 4.8 80 218-320 7-96 (239)
107 TIGR02477 PFKA_PPi diphosphate 75.6 2.5 5.3E-05 47.8 3.4 53 285-339 160-229 (539)
108 cd08172 GlyDH-like1 Glycerol d 75.0 8.4 0.00018 40.6 7.1 83 219-318 24-108 (347)
109 PRK10310 PTS system galactitol 74.8 36 0.00077 29.5 9.8 91 220-342 4-94 (94)
110 PLN02251 pyrophosphate-depende 74.8 2.6 5.6E-05 48.0 3.3 122 217-340 95-259 (568)
111 PRK07085 diphosphate--fructose 74.4 2.8 6E-05 47.6 3.5 34 285-318 163-201 (555)
112 PLN03028 pyrophosphate--fructo 73.9 2.9 6.2E-05 48.0 3.5 33 285-317 172-209 (610)
113 PRK06203 aroB 3-dehydroquinate 73.6 11 0.00024 40.8 7.7 34 285-319 110-146 (389)
114 KOG1115 Ceramide kinase [Lipid 73.3 3.2 6.9E-05 45.4 3.4 20 285-304 216-235 (516)
115 PRK08857 para-aminobenzoate sy 72.8 14 0.0003 35.7 7.4 75 221-320 2-82 (193)
116 cd00765 Pyrophosphate_PFK Phos 72.5 3.2 6.9E-05 47.1 3.4 54 285-340 165-235 (550)
117 cd08550 GlyDH-like Glycerol_de 72.2 13 0.00029 39.1 7.8 83 219-318 23-109 (349)
118 PTZ00287 6-phosphofructokinase 71.9 3.4 7.5E-05 51.1 3.6 120 218-341 836-998 (1419)
119 PRK05637 anthranilate synthase 71.8 8.8 0.00019 38.0 5.9 78 218-320 1-83 (208)
120 cd08174 G1PDH-like Glycerol-1- 71.7 14 0.00031 38.5 7.8 32 286-318 75-107 (331)
121 PLN02335 anthranilate synthase 71.6 17 0.00036 36.3 7.9 79 217-320 17-101 (222)
122 cd00764 Eukaryotic_PFK Phospho 71.6 21 0.00045 42.2 9.8 121 217-340 2-181 (762)
123 TIGR01815 TrpE-clade3 anthrani 71.1 9.1 0.0002 44.8 6.7 79 217-320 515-598 (717)
124 TIGR03405 Phn_Fe-ADH phosphona 70.8 11 0.00024 40.0 6.7 76 219-306 24-99 (355)
125 PRK07649 para-aminobenzoate/an 70.7 12 0.00026 36.5 6.5 75 221-320 2-82 (195)
126 PRK09065 glutamine amidotransf 70.5 7 0.00015 39.2 5.0 36 285-320 53-98 (237)
127 PTZ00468 phosphofructokinase f 70.1 3.5 7.5E-05 50.8 3.1 44 285-328 799-864 (1328)
128 cd08190 HOT Hydroxyacid-oxoaci 70.0 13 0.00027 40.5 7.1 75 219-306 24-99 (414)
129 TIGR02478 6PF1K_euk 6-phosphof 69.1 4 8.7E-05 47.9 3.3 122 216-340 387-546 (745)
130 PLN02834 3-dehydroquinate synt 68.7 14 0.0003 40.7 7.2 95 218-319 100-198 (433)
131 cd01745 GATase1_2 Subgroup of 68.3 15 0.00033 35.3 6.7 71 232-320 17-110 (189)
132 cd00764 Eukaryotic_PFK Phospho 67.4 4.6 0.0001 47.5 3.4 123 215-340 386-546 (762)
133 PRK13566 anthranilate synthase 67.4 17 0.00037 42.6 7.9 79 217-320 525-608 (720)
134 PRK07567 glutamine amidotransf 66.8 7.4 0.00016 39.3 4.3 36 285-320 50-103 (242)
135 TIGR00337 PyrG CTP synthase. C 66.2 16 0.00034 41.4 7.1 85 218-320 289-382 (525)
136 PRK08250 glutamine amidotransf 65.5 12 0.00026 37.6 5.4 78 220-320 2-94 (235)
137 KOG0782 Predicted diacylglycer 65.1 10 0.00022 43.1 5.3 68 290-357 420-498 (1004)
138 PRK11366 puuD gamma-glutamyl-g 64.9 21 0.00046 36.3 7.2 84 220-320 9-117 (254)
139 PF08357 SEFIR: SEFIR domain; 64.0 38 0.00081 30.9 8.1 79 219-307 1-79 (150)
140 cd08197 DOIS 2-deoxy-scyllo-in 63.3 52 0.0011 35.2 10.1 88 219-319 24-119 (355)
141 cd08184 Fe-ADH3 Iron-containin 62.3 20 0.00044 38.1 6.8 20 286-306 81-100 (347)
142 cd01537 PBP1_Repressors_Sugar_ 62.2 82 0.0018 29.7 10.3 87 220-320 1-89 (264)
143 PF00117 GATase: Glutamine ami 61.9 15 0.00033 34.7 5.3 37 284-320 40-82 (192)
144 cd01744 GATase1_CPSase Small c 61.6 17 0.00036 34.6 5.5 36 285-320 38-79 (178)
145 cd08198 DHQS-like2 Dehydroquin 60.9 33 0.00072 37.1 8.1 98 217-319 29-134 (369)
146 cd01747 GATase1_Glutamyl_Hydro 60.8 27 0.00059 36.0 7.2 41 280-320 48-102 (273)
147 TIGR02478 6PF1K_euk 6-phosphof 60.6 6.9 0.00015 46.0 3.1 55 285-341 93-179 (745)
148 PTZ00468 phosphofructokinase f 60.6 7.2 0.00016 48.2 3.3 34 285-318 195-233 (1328)
149 PRK05380 pyrG CTP synthetase; 60.5 28 0.0006 39.6 7.6 89 218-320 288-382 (533)
150 COG1819 Glycosyl transferases, 60.3 74 0.0016 34.6 10.8 123 213-344 231-370 (406)
151 cd01746 GATase1_CTP_Synthase T 59.8 20 0.00044 36.1 5.9 37 284-320 53-94 (235)
152 cd03794 GT1_wbuB_like This fam 59.4 81 0.0017 30.9 10.0 122 216-342 218-365 (394)
153 PF15372 DUF4600: Domain of un 59.3 5 0.00011 37.4 1.4 28 84-111 2-29 (129)
154 PRK13527 glutamine amidotransf 58.0 29 0.00063 33.6 6.5 36 285-320 42-87 (200)
155 PRK13805 bifunctional acetalde 57.8 29 0.00063 41.3 7.7 21 285-306 538-558 (862)
156 PF13528 Glyco_trans_1_3: Glyc 57.6 40 0.00086 34.0 7.7 87 217-318 191-278 (318)
157 cd06309 PBP1_YtfQ_like Peripla 56.4 41 0.0009 32.8 7.4 86 220-319 1-89 (273)
158 PRK13525 glutamine amidotransf 55.7 39 0.00084 32.7 6.9 36 285-320 37-82 (189)
159 cd08188 Fe-ADH4 Iron-containin 55.6 27 0.00059 37.3 6.4 75 219-306 29-104 (377)
160 COG4069 Uncharacterized protei 54.4 12 0.00026 39.6 3.3 36 282-318 262-297 (367)
161 KOG1169 Diacylglycerol kinase 53.8 75 0.0016 36.9 9.7 68 289-356 326-409 (634)
162 PRK15138 aldehyde reductase; P 53.7 30 0.00066 37.3 6.4 75 219-307 30-105 (387)
163 TIGR00888 guaA_Nterm GMP synth 53.4 22 0.00047 34.0 4.7 34 287-320 42-80 (188)
164 cd01741 GATase1_1 Subgroup of 53.1 24 0.00052 33.4 5.0 37 284-320 44-91 (188)
165 cd06267 PBP1_LacI_sugar_bindin 52.9 1.3E+02 0.0029 28.3 10.0 85 221-319 2-87 (264)
166 cd01391 Periplasmic_Binding_Pr 52.8 1.4E+02 0.003 27.6 10.0 89 220-321 1-93 (269)
167 cd03785 GT1_MurG MurG is an N- 51.9 1.1E+02 0.0024 31.0 9.9 60 279-342 245-324 (350)
168 TIGR03800 PLP_synth_Pdx2 pyrid 50.6 42 0.00092 32.4 6.3 36 285-320 35-80 (184)
169 COG0371 GldA Glycerol dehydrog 48.2 64 0.0014 35.0 7.7 41 285-326 83-126 (360)
170 COG0512 PabA Anthranilate/para 47.4 1.1E+02 0.0025 30.4 8.6 77 218-320 1-84 (191)
171 KOG2387 CTP synthase (UTP-ammo 47.4 48 0.001 37.1 6.6 38 283-320 360-402 (585)
172 cd03814 GT1_like_2 This family 47.2 89 0.0019 30.8 8.2 120 218-342 197-332 (364)
173 PF08788 NHR2: NHR2 domain lik 47.1 38 0.00083 28.1 4.4 31 63-93 28-61 (67)
174 TIGR01368 CPSaseIIsmall carbam 47.1 24 0.00052 38.0 4.3 74 219-320 174-253 (358)
175 PRK08007 para-aminobenzoate sy 47.0 49 0.0011 31.9 6.1 75 221-320 2-82 (187)
176 CHL00197 carA carbamoyl-phosph 46.7 46 0.001 36.3 6.4 75 219-320 193-273 (382)
177 CHL00188 hisH imidazole glycer 46.3 63 0.0014 32.1 6.8 34 286-320 39-84 (210)
178 COG0518 GuaA GMP synthase - Gl 46.2 99 0.0021 30.6 8.2 35 286-320 45-89 (198)
179 TIGR01823 PabB-fungal aminodeo 45.9 40 0.00086 39.8 6.2 37 284-320 51-96 (742)
180 TIGR03590 PseG pseudaminic aci 45.6 75 0.0016 32.4 7.5 36 278-318 233-268 (279)
181 PRK13181 hisH imidazole glycer 45.5 38 0.00082 32.7 5.1 35 285-320 36-82 (199)
182 PRK12564 carbamoyl phosphate s 45.3 31 0.00067 37.2 4.8 75 219-320 178-258 (360)
183 COG0504 PyrG CTP synthase (UTP 44.3 63 0.0014 36.6 7.0 133 287-441 344-506 (533)
184 cd03145 GAT1_cyanophycinase Ty 43.8 72 0.0016 31.5 6.9 88 218-320 29-127 (217)
185 PLN02327 CTP synthase 43.3 84 0.0018 36.0 8.0 37 283-320 359-401 (557)
186 PRK13143 hisH imidazole glycer 42.8 87 0.0019 30.4 7.1 36 285-320 37-81 (200)
187 PRK12838 carbamoyl phosphate s 42.2 78 0.0017 34.1 7.3 74 219-320 168-247 (354)
188 TIGR01133 murG undecaprenyldip 41.4 2.1E+02 0.0045 29.0 10.0 60 279-342 243-321 (348)
189 PRK15395 methyl-galactoside AB 41.0 1.8E+02 0.004 29.9 9.6 89 217-319 23-115 (330)
190 cd03823 GT1_ExpE7_like This fa 41.0 2.3E+02 0.0049 27.7 9.9 125 215-342 188-329 (359)
191 cd03817 GT1_UGDG_like This fam 40.5 1.7E+02 0.0037 28.6 9.0 124 214-342 198-343 (374)
192 TIGR01426 MGT glycosyltransfer 40.2 34 0.00074 35.9 4.2 33 282-318 287-319 (392)
193 cd00858 GlyRS_anticodon GlyRS 40.1 1.3E+02 0.0028 26.7 7.3 71 210-297 16-88 (121)
194 COG2984 ABC-type uncharacteriz 39.9 1.8E+02 0.0038 31.3 9.3 110 218-343 159-280 (322)
195 cd03129 GAT1_Peptidase_E_like 39.8 90 0.0019 30.4 6.8 87 217-320 28-124 (210)
196 cd03784 GT1_Gtf_like This fami 39.0 53 0.0011 34.4 5.4 59 281-343 299-373 (401)
197 PRK13146 hisH imidazole glycer 39.0 97 0.0021 30.5 6.9 36 285-320 40-87 (209)
198 COG1570 XseA Exonuclease VII, 38.9 68 0.0015 35.7 6.3 100 217-331 134-242 (440)
199 cd06325 PBP1_ABC_uncharacteriz 38.6 1.5E+02 0.0033 28.7 8.2 86 217-318 130-219 (281)
200 cd01421 IMPCH Inosine monophos 38.3 75 0.0016 31.5 5.9 47 293-353 122-169 (187)
201 cd01536 PBP1_ABC_sugar_binding 38.0 1.8E+02 0.004 27.5 8.5 87 220-320 1-90 (267)
202 PRK14021 bifunctional shikimat 37.6 67 0.0015 36.3 6.2 33 285-318 268-303 (542)
203 cd04949 GT1_gtfA_like This fam 37.5 2.6E+02 0.0057 28.5 10.1 60 280-342 272-345 (372)
204 PRK05234 mgsA methylglyoxal sy 37.5 2.2E+02 0.0048 26.6 8.7 46 216-264 2-48 (142)
205 cd08196 DHQS-like1 Dehydroquin 37.2 1.2E+02 0.0026 32.4 7.8 76 219-307 20-96 (346)
206 TIGR01737 FGAM_synth_I phospho 37.2 82 0.0018 31.4 6.1 36 285-320 39-88 (227)
207 cd06301 PBP1_rhizopine_binding 36.6 1.7E+02 0.0038 28.2 8.3 85 221-318 2-89 (272)
208 cd06282 PBP1_GntR_like_2 Ligan 36.1 1.9E+02 0.0041 27.6 8.4 85 221-319 2-88 (266)
209 PF02401 LYTB: LytB protein; 35.5 57 0.0012 34.1 4.8 68 217-298 153-221 (281)
210 cd00861 ProRS_anticodon_short 35.3 95 0.002 25.6 5.4 63 218-296 1-64 (94)
211 cd01742 GATase1_GMP_Synthase T 35.3 20 0.00042 33.8 1.3 37 284-320 39-80 (181)
212 PF13380 CoA_binding_2: CoA bi 34.7 1.2E+02 0.0025 27.2 6.1 87 219-319 1-88 (116)
213 cd06305 PBP1_methylthioribose_ 34.3 2E+02 0.0042 27.8 8.2 85 221-319 2-89 (273)
214 PF04101 Glyco_tran_28_C: Glyc 34.1 26 0.00056 32.3 1.9 34 280-317 66-99 (167)
215 cd03820 GT1_amsD_like This fam 33.7 2.7E+02 0.0059 26.7 9.0 124 215-342 175-319 (348)
216 cd03128 GAT_1 Type 1 glutamine 33.6 39 0.00084 25.4 2.5 38 284-321 44-90 (92)
217 PF02601 Exonuc_VII_L: Exonucl 33.5 84 0.0018 32.6 5.7 93 213-315 9-112 (319)
218 PF04392 ABC_sub_bind: ABC tra 32.6 2.1E+02 0.0045 29.2 8.3 82 220-316 1-89 (294)
219 cd06273 PBP1_GntR_like_1 This 32.6 2.4E+02 0.0051 27.2 8.4 83 221-318 2-86 (268)
220 PF11459 DUF2893: Protein of u 32.5 35 0.00076 28.7 2.2 34 36-69 2-35 (69)
221 PLN02734 glycyl-tRNA synthetas 31.7 1.4E+02 0.003 35.2 7.5 108 208-346 560-667 (684)
222 cd03808 GT1_cap1E_like This fa 31.2 2.8E+02 0.006 26.8 8.7 123 216-342 186-329 (359)
223 COG1370 Prefoldin, molecular c 31.1 1.4E+02 0.003 28.9 6.1 113 373-492 28-153 (155)
224 PF12107 VEK-30: Plasminogen ( 30.7 42 0.00091 20.9 1.7 14 92-105 3-16 (17)
225 cd06300 PBP1_ABC_sugar_binding 30.7 2.2E+02 0.0048 27.5 7.9 85 220-319 1-94 (272)
226 PF06283 ThuA: Trehalose utili 30.7 5.1E+02 0.011 25.1 15.9 111 220-356 1-122 (217)
227 cd06320 PBP1_allose_binding Pe 30.5 1.9E+02 0.0042 28.0 7.4 87 220-319 1-91 (275)
228 cd03146 GAT1_Peptidase_E Type 30.4 2.1E+02 0.0046 28.0 7.7 83 216-320 29-124 (212)
229 COG0745 OmpR Response regulato 30.2 5.7E+02 0.012 25.6 13.0 100 220-345 2-121 (229)
230 cd06312 PBP1_ABC_sugar_binding 30.1 2.3E+02 0.0049 27.6 7.9 87 220-319 1-91 (271)
231 TIGR02069 cyanophycinase cyano 29.6 1.7E+02 0.0038 29.8 7.1 87 219-320 29-126 (250)
232 cd05566 PTS_IIB_galactitol PTS 29.6 3.3E+02 0.0071 22.6 8.9 88 219-339 1-88 (89)
233 PRK00758 GMP synthase subunit 29.3 1.3E+02 0.0027 28.6 5.8 32 288-320 43-77 (184)
234 PRK12360 4-hydroxy-3-methylbut 28.8 1.1E+02 0.0023 32.2 5.5 74 218-306 156-234 (281)
235 COG0859 RfaF ADP-heptose:LPS h 28.8 2.1E+02 0.0046 29.9 7.9 80 233-318 194-278 (334)
236 PRK11249 katE hydroperoxidase 28.7 1.7E+02 0.0037 34.8 7.7 98 213-319 592-700 (752)
237 PTZ00287 6-phosphofructokinase 28.4 48 0.001 41.7 3.3 34 285-318 270-308 (1419)
238 cd06321 PBP1_ABC_sugar_binding 28.3 3.9E+02 0.0085 25.8 9.2 99 221-332 2-104 (271)
239 cd01545 PBP1_SalR Ligand-bindi 28.3 2.5E+02 0.0055 26.9 7.8 85 221-318 2-88 (270)
240 cd06310 PBP1_ABC_sugar_binding 27.9 3.5E+02 0.0076 26.1 8.7 87 220-319 1-91 (273)
241 cd06281 PBP1_LacI_like_5 Ligan 27.8 3.2E+02 0.007 26.4 8.5 107 221-341 2-113 (269)
242 cd03822 GT1_ecORF704_like This 27.6 3.6E+02 0.0079 26.5 8.9 62 277-342 258-334 (366)
243 PRK01045 ispH 4-hydroxy-3-meth 27.6 1.2E+02 0.0026 32.1 5.7 66 218-297 155-221 (298)
244 TIGR00216 ispH_lytB (E)-4-hydr 27.5 85 0.0018 32.9 4.5 65 218-296 153-218 (280)
245 PF08947 BPS: BPS (Between PH 27.3 50 0.0011 25.9 2.1 21 73-93 23-43 (49)
246 PRK00726 murG undecaprenyldiph 27.2 91 0.002 32.0 4.7 60 279-342 245-324 (357)
247 cd06295 PBP1_CelR Ligand bindi 27.0 3.9E+02 0.0084 25.9 8.9 83 219-319 4-96 (275)
248 cd06333 PBP1_ABC-type_HAAT_lik 26.9 6.4E+02 0.014 25.1 10.7 85 217-316 132-220 (312)
249 PRK01175 phosphoribosylformylg 26.6 1.5E+02 0.0033 30.5 6.2 83 219-324 4-108 (261)
250 cd01748 GATase1_IGP_Synthase T 26.6 1E+02 0.0023 29.5 4.7 36 285-320 35-81 (198)
251 cd06314 PBP1_tmGBP Periplasmic 26.5 3.1E+02 0.0067 26.6 8.1 84 220-318 1-87 (271)
252 PRK10653 D-ribose transporter 26.1 4.3E+02 0.0094 26.2 9.2 88 217-318 25-115 (295)
253 PF08025 Antimicrobial_3: Spid 26.0 1.1E+02 0.0025 22.2 3.5 25 57-83 3-27 (37)
254 cd06319 PBP1_ABC_sugar_binding 25.9 3.8E+02 0.0083 25.8 8.6 98 221-332 2-104 (277)
255 cd03169 GATase1_PfpI_1 Type 1 25.6 55 0.0012 30.8 2.5 36 286-321 76-119 (180)
256 KOG3349 Predicted glycosyltran 25.6 70 0.0015 31.1 3.2 27 279-305 73-99 (170)
257 KOG1250 Threonine/serine dehyd 25.3 2.2E+02 0.0049 31.6 7.3 29 289-317 219-249 (457)
258 PRK00881 purH bifunctional pho 25.1 1.4E+02 0.003 34.1 5.8 41 217-263 3-43 (513)
259 cd06167 LabA_like LabA_like pr 25.1 69 0.0015 28.9 3.1 34 286-319 99-132 (149)
260 cd01740 GATase1_FGAR_AT Type 1 24.7 53 0.0012 32.9 2.4 35 285-319 42-91 (238)
261 cd01538 PBP1_ABC_xylose_bindin 24.3 4.3E+02 0.0094 26.1 8.8 85 221-319 2-89 (288)
262 cd06289 PBP1_MalI_like Ligand- 24.3 3.9E+02 0.0085 25.5 8.3 84 221-318 2-87 (268)
263 cd06308 PBP1_sensor_kinase_lik 24.2 3.6E+02 0.0078 26.1 8.1 86 221-319 2-90 (270)
264 PRK02290 3-dehydroquinate synt 24.2 1.1E+02 0.0025 33.0 4.8 84 409-493 236-328 (344)
265 PF15431 TMEM190: Transmembran 24.0 41 0.00089 30.8 1.3 46 126-182 25-70 (134)
266 cd06302 PBP1_LsrB_Quorum_Sensi 23.9 4.2E+02 0.0091 26.5 8.7 86 220-319 1-90 (298)
267 PF00534 Glycos_transf_1: Glyc 23.8 2.6E+02 0.0056 25.1 6.6 124 214-342 11-158 (172)
268 cd03132 GATase1_catalase Type 23.6 54 0.0012 29.5 2.0 35 286-320 62-105 (142)
269 cd06317 PBP1_ABC_sugar_binding 23.5 3.8E+02 0.0083 25.7 8.1 84 221-318 2-89 (275)
270 TIGR01382 PfpI intracellular p 23.1 55 0.0012 30.1 2.0 35 286-320 60-102 (166)
271 cd03825 GT1_wcfI_like This fam 22.9 5.7E+02 0.012 25.4 9.4 62 277-342 255-330 (365)
272 TIGR00355 purH phosphoribosyla 22.7 1.3E+02 0.0029 34.1 5.1 38 220-263 2-39 (511)
273 cd03807 GT1_WbnK_like This fam 22.5 3.7E+02 0.0081 26.1 7.8 59 280-342 262-332 (365)
274 cd03801 GT1_YqgM_like This fam 22.4 3.9E+02 0.0085 25.6 7.8 61 278-342 267-341 (374)
275 PRK13141 hisH imidazole glycer 22.4 1.4E+02 0.003 29.0 4.7 36 285-320 36-82 (205)
276 cd06349 PBP1_ABC_ligand_bindin 22.3 4.3E+02 0.0092 26.8 8.5 85 218-316 135-222 (340)
277 KOG0206 P-type ATPase [General 21.9 80 0.0017 39.2 3.5 42 50-97 578-620 (1151)
278 PF14403 CP_ATPgrasp_2: Circul 21.8 1.6E+02 0.0035 32.8 5.6 35 319-353 350-386 (445)
279 PRK01293 phosphoribosyl-dephos 21.8 49 0.0011 33.1 1.5 23 411-433 113-135 (207)
280 cd06299 PBP1_LacI_like_13 Liga 21.8 4.3E+02 0.0093 25.3 8.0 84 221-319 2-87 (265)
281 PRK10014 DNA-binding transcrip 21.7 6.2E+02 0.013 25.6 9.5 110 218-341 64-179 (342)
282 PRK11253 ldcA L,D-carboxypepti 21.7 2.2E+02 0.0047 30.0 6.3 40 218-258 1-40 (305)
283 PF00201 UDPGT: UDP-glucoronos 21.2 2.9E+02 0.0062 30.1 7.3 117 218-343 275-410 (500)
284 KOG3857 Alcohol dehydrogenase, 21.1 2E+02 0.0044 31.5 5.9 77 216-304 68-144 (465)
285 PLN02889 oxo-acid-lyase/anthra 21.0 2.4E+02 0.0051 34.5 7.0 79 219-320 82-172 (918)
286 TIGR02919 accessory Sec system 21.0 4.5E+02 0.0098 29.1 8.8 121 214-341 278-410 (438)
287 cd01574 PBP1_LacI Ligand-bindi 20.8 4.7E+02 0.01 25.0 8.1 109 221-343 2-115 (264)
288 cd06316 PBP1_ABC_sugar_binding 20.7 4.3E+02 0.0093 26.1 8.0 85 220-318 1-89 (294)
289 PLN02771 carbamoyl-phosphate s 20.6 1.7E+02 0.0038 32.4 5.5 63 237-320 252-320 (415)
290 COG0761 lytB 4-Hydroxy-3-methy 20.6 1.8E+02 0.004 30.8 5.3 76 217-306 156-237 (294)
291 cd01541 PBP1_AraR Ligand-bindi 20.5 4.5E+02 0.0098 25.4 8.0 107 221-341 2-118 (273)
292 TIGR00237 xseA exodeoxyribonuc 20.4 2.2E+02 0.0047 31.4 6.2 90 213-315 124-224 (432)
293 cd01749 GATase1_PB Glutamine A 20.1 2.4E+02 0.0051 27.0 5.7 36 285-320 34-79 (183)
294 PF15047 DUF4533: Protein of u 20.1 41 0.00089 34.1 0.5 39 37-75 179-221 (225)
295 PF02731 SKIP_SNW: SKIP/SNW do 20.1 3.8E+02 0.0082 26.0 6.9 41 45-88 98-138 (158)
296 cd06334 PBP1_ABC_ligand_bindin 20.1 4.7E+02 0.01 27.2 8.4 87 217-318 139-229 (351)
297 COG4787 FlgF Flagellar basal b 20.1 1.1E+02 0.0023 31.4 3.4 55 401-459 81-137 (251)
298 cd03137 GATase1_AraC_1 AraC tr 20.1 75 0.0016 29.8 2.3 37 284-320 62-106 (187)
No 1
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=5.1e-151 Score=1204.44 Aligned_cols=506 Identities=81% Similarity=1.269 Sum_probs=462.9
Q ss_pred CCCCCCccccccccccHHHHHHHhhcCCCCCCCchhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 009486 22 PHSENGFGDSLSLLQSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEWKRRFELERARNLR 101 (533)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (533)
++++||+++..++++||||+|||||||||+++|+||+||||||||||||||+||||||+||||||||||||||||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (508)
T PLN02935 1 SQPDNGFSDSLSLFHSEKAVQELLQQTPIQDTDDHLVEFSEALRTVAKALRRVAEGKALAQAEAAEWKRKYELERARNQQ 80 (508)
T ss_pred CCCCCccccchhhhhhHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccccCCccccCCCCcccccccccccccccccCccchhhhccccc-CCCccchhcccccceeEEEEecc
Q 009486 102 LENKEQSFKENNSVSEGGRLENSTSQPVLLNQEREHSNRACLEHGICSHEVLQDAK-DVDSNMVNNKIMKKASFKLSWRC 180 (533)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~ 180 (533)
||+++++|++|+.+++..++||+++|++|+++++ +||++|||||||||||+| ++++.++.+++++||||+|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (508)
T PLN02935 81 LEHKELSSGECNEESNDQRLENLANQPMLYNEAI----NCCGMEGICSHEVLQDGSTDSDNRSVLNKVMRKASFKLSWGC 156 (508)
T ss_pred HHHHhhhhhhhccccchhhhhccccccccccccc----ccccccchhhhhHHhccCCCCcchhhhhhhcccCceEEEecc
Confidence 9999999999999999999999999999999988 599999999999999999 99999999999999999999999
Q ss_pred cCCCCccccceEEEecCCceeeeccCcceEEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHH
Q 009486 181 KGENSDQHKHDIVYFERGNITTAERSSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAE 260 (533)
Q Consensus 181 ~~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~ 260 (533)
+|++++|||||||+|++|+|+|++|++||++|+|+++|++|+||+|+.++++.+++.+|++||++.++++|++++..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~ 236 (508)
T PLN02935 157 KGDKSDQHKHDIVSFERGNITTAERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKE 236 (508)
T ss_pred CCCcCcccccceeeeecCceeeccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999975578999999876654
Q ss_pred hhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHH
Q 009486 261 LLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 261 l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll 340 (533)
+......+.....|.....+.++..++|+||+||||||||+|+|.+....+||+|||+|+||||++++++++++.|++++
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 237 LLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred hccccccccccccccccchhhhcccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHH
Confidence 43211111122222221222234567999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeeeeEEEeecccccccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHh
Q 009486 341 RGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSL 420 (533)
Q Consensus 341 ~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsL 420 (533)
+|+|.+++|+||+|.|.+++..........++|||||+|.|+..++|+.+++||||+++++|+|||||||||||||||||
T Consensus 317 ~G~y~Ie~R~~L~~~v~~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsL 396 (508)
T PLN02935 317 KGPISITLRHRLQCHIIRDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSL 396 (508)
T ss_pred cCCceEEEEeEEEEEEEcCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHH
Confidence 99999999999999998654321111123568999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEE
Q 009486 421 AAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTAC 500 (533)
Q Consensus 421 SAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~ 500 (533)
|||||||+|.+++|+|||||||+|++||||+|++++|+|++....+..+++++||+....|.+||+|.|++|++++++|+
T Consensus 397 SAGGPIV~P~l~~ivlTPIcPHsLs~RPIVlp~~s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~ 476 (508)
T PLN02935 397 AAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTAC 476 (508)
T ss_pred hcCCcccCCCCCeEEEEecCCCcCCCCCeEECCCCEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEe
Confidence 99999999999999999999999999999999999999998654445689999999999999999999999999999998
Q ss_pred eeCCCCChHHHHHhhhCCCccCCCCCCCCCCC
Q 009486 501 QVDSTDDFFRSIHDGLHWNLRKTQSSFDVPLD 532 (533)
Q Consensus 501 l~~~~~dff~~LreKL~Wg~r~~q~~~~~~~~ 532 (533)
+...+++||++||+||+||.|.+|+ +|||++
T Consensus 477 l~~~~~~Ff~~Lr~KL~Wg~R~rq~-~~~~~~ 507 (508)
T PLN02935 477 QVESTNDFLRSIHDGLHWNLRKTQS-FDGPRS 507 (508)
T ss_pred eCCCCCCHHHHHHHHcCCCcccccc-CCCCCC
Confidence 8666789999999999999999999 999986
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-77 Score=614.16 Aligned_cols=319 Identities=45% Similarity=0.810 Sum_probs=280.4
Q ss_pred cceEEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHHhh--hc-----CCcccccccccchH
Q 009486 207 SKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELL--TE-----SSYFSFVQTWKDEK 278 (533)
Q Consensus 207 ~~~~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~-gi~V~ve~~~a~~l~--~~-----~~~~~~i~~~~~~~ 278 (533)
...-.+.|..||++| +|.|+.++++.+.+.|+++||.+.. .+.||++..+++... .. ......+..|..+
T Consensus 83 ~~s~~l~~~~p~~~~-lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e- 160 (409)
T KOG2178|consen 83 SLSQRLIWLKPPKNL-LVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNLDESFGVKERILYWTTE- 160 (409)
T ss_pred hhhhchhccCCCceE-EEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccchhhcccchhceEeeccc-
Confidence 334468998877665 5556678899999999999998755 699999999887541 11 1112234445432
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEee
Q 009486 279 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIR 358 (533)
Q Consensus 279 ~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r 358 (533)
...++...+|+||+||||||+|+|+++|++..||||.|++|+|||||+|+.+++++.|.++++|+..+..||||+|+++|
T Consensus 161 ~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~~~~v~lR~RL~C~i~r 240 (409)
T KOG2178|consen 161 GCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNGRAAVNLRMRLRCSLKR 240 (409)
T ss_pred cccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhcCcceEeeeeeEEEEEEE
Confidence 24567788999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEe
Q 009486 359 DAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTP 438 (533)
Q Consensus 359 ~~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTP 438 (533)
.+..........+++||||+|+||+++.|+.+++|+||+++++++||||||||||||||||+|||||++||.++||++||
T Consensus 241 k~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTP 320 (409)
T KOG2178|consen 241 KDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTP 320 (409)
T ss_pred ecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchhhhHhhcCCceecCCCCeEEEec
Confidence 75432111123789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCeeeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCC
Q 009486 439 ICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHW 518 (533)
Q Consensus 439 IcPhsLs~RPlVlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~W 518 (533)
||||+|+|||||+|++.+++|+++.++|..+|++|||+++.+|..||.|.|+.+.+|++.|+-.....|||+.|.++|+|
T Consensus 321 ICPhSLSFRPIIlPds~~L~I~i~~dsR~~awvSfDG~~r~El~~GD~i~I~tS~ypfPti~~s~~~~dWf~sl~~~L~W 400 (409)
T KOG2178|consen 321 ICPHSLSFRPIILPDSSELRVEVPLDSRSTAWVSFDGRPRQELSLGDYIDITTSRYPFPTIISSDEESDWFESLARLLNW 400 (409)
T ss_pred cCCCcccccceEccCccEEEEEeCccccccceEEecCcchhhccCCceEEEEeccCCCceeecCcchhhHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999987554559999999999999
Q ss_pred CccCCCCCC
Q 009486 519 NLRKTQSSF 527 (533)
Q Consensus 519 g~r~~q~~~ 527 (533)
|.|++||+|
T Consensus 401 N~r~rqk~~ 409 (409)
T KOG2178|consen 401 NVRKRQKPF 409 (409)
T ss_pred CchhhccCC
Confidence 999999976
No 3
>PLN02727 NAD kinase
Probab=100.00 E-value=9e-76 Score=654.06 Aligned_cols=322 Identities=46% Similarity=0.802 Sum_probs=280.5
Q ss_pred eeeeccCcceEEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHH
Q 009486 200 ITTAERSSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKE 279 (533)
Q Consensus 200 i~~~~~~~~~~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~ 279 (533)
+...+|+++|++|+|.+||++|+||+|+.+ ++.+.+.+|++||.++++++|++|+..+..+... ..+.....+.. ..
T Consensus 660 ~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~-ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~-~~~~~~~~~~~-~~ 736 (986)
T PLN02727 660 LAFTHPSTQQQMLMWKSTPKTVLLLKKLGQ-ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARI-PGFGFVQTFYS-QD 736 (986)
T ss_pred ccccCcchhceeeecCCCCCEEEEEcCCcH-HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhcc-ccccccceecc-cc
Confidence 334589999999999999999999999988 7899999999999876699999999887654211 11111111110 11
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceE-----EEEeeeeE
Q 009486 280 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI-----TLRNRLQC 354 (533)
Q Consensus 280 ~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~i-----e~R~rL~v 354 (533)
..++..++|+||+||||||||+|+|.+....+||||||+|+|||||+++++++++.|+++++|+|.+ ++|+||+|
T Consensus 737 ~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrLGFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~~ 816 (986)
T PLN02727 737 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRC 816 (986)
T ss_pred hhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCccccccCCHHHHHHHHHHHHcCCccccccccceeeEEEE
Confidence 2345567999999999999999999999999999999999999999999999999999999999965 89999999
Q ss_pred EEeecccccccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCce
Q 009486 355 HVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGI 434 (533)
Q Consensus 355 ~V~r~~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~ai 434 (533)
.+.+++... ....++|||||+|.|+..++|+.+++||||+++++|+||||||||||||||||||||||||||.+++|
T Consensus 817 ~V~r~g~~i---~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~aI 893 (986)
T PLN02727 817 EIFRNGKAM---PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCM 893 (986)
T ss_pred EEecCCccc---ccccceEEEEEEEecCCCccEEEEEEEECCEEeEEeecceEEEECCCchHHhHhhcCCceeCCCCCeE
Confidence 998764211 01246799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCeeeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHh
Q 009486 435 LFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHD 514 (533)
Q Consensus 435 viTPIcPhsLs~RPlVlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~Lre 514 (533)
+|||||||+|++||||||++++|+|++....+..+++++||+....|.+||+|.|++|++++++|++...+.+||++||+
T Consensus 894 vITPIcPHSLs~RPIVLp~ds~I~IkI~~~sr~~a~Ls~DGq~~~~L~~GD~I~Ir~S~~~v~lVr~~~~~~dFf~~LR~ 973 (986)
T PLN02727 894 LFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKSDQTGDWFRSLIR 973 (986)
T ss_pred EEEecCcccCCCCCEEECCCCeEEEEEccCCCCceEEEECCCeeeecCCCCEEEEEECCceEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999875554468999999999999999999999999999999764434599999999
Q ss_pred hhCCCccCCCCCC
Q 009486 515 GLHWNLRKTQSSF 527 (533)
Q Consensus 515 KL~Wg~r~~q~~~ 527 (533)
||+||.|.+||+|
T Consensus 974 KL~W~~r~~Qk~l 986 (986)
T PLN02727 974 CLNWNERLDQKAL 986 (986)
T ss_pred HhCCCcccccCCC
Confidence 9999999999975
No 4
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=9.5e-74 Score=585.10 Aligned_cols=299 Identities=26% Similarity=0.357 Sum_probs=259.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCc--ccccccccchHHHhhhCCCccEEEEEeC
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSY--FSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
|++|+|++|+.++++.+++.++.+||.+ .|+++++++..+..+...... ......+. .+...+..++|+||+|||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILGYANPDQPVCHTGIDQ--LVPPGFDSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccccccccccccccc--cChhhcccCcCEEEEEeC
Confidence 4689999999999999999999999976 689999987654432110000 00000000 011234457899999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEE
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLN 375 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALN 375 (533)
|||||+|+|.+....+||+|||+|+||||++++++++++.|+++++|+|.+++|+||+|++.+++.. ....+|||
T Consensus 78 DGTlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y~ie~r~~L~~~v~~~~~~-----~~~~~ALN 152 (305)
T PRK02649 78 DGTVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQYTIEERTMLTVSVMRGDQL-----RWEALSLN 152 (305)
T ss_pred cHHHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCcEEEEeeeEEEEEEECCcc-----eeeeeeee
Confidence 9999999999998999999999999999999999999999999999999999999999998765321 12458999
Q ss_pred eEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCC
Q 009486 376 EVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHV 455 (533)
Q Consensus 376 EVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~ 455 (533)
|++|.++..++|++++++|||+++.+|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|+++
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~RplVlp~~~ 232 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSDSE 232 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEecCcCCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccCCCCCCC
Q 009486 456 TLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKTQSSFD 528 (533)
Q Consensus 456 ~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~~q~~~~ 528 (533)
+|+|++.. ...+.+++||+....|.+||+|.|++|+++++++.+ .+++||++||+||+||.+..|||+-
T Consensus 233 ~I~i~~~~--~~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~--~~~~f~~~Lr~KL~wg~~~~~~~~~ 301 (305)
T PRK02649 233 PVTVFPAT--PERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRL--QDPEFFRVLREKLGWGLPHIAKPTS 301 (305)
T ss_pred EEEEEecC--CCcEEEEEecceeEecCCCCEEEEEECCCEEEEEEc--CCCCHHHHHHHHcCCCCCcccCCCc
Confidence 99998754 246899999999999999999999999999999865 5789999999999999999999874
No 5
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.9e-73 Score=580.86 Aligned_cols=292 Identities=27% Similarity=0.471 Sum_probs=254.8
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhH---HhhhcCCcccccccccchHHHhhhCCCccEE
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRA---ELLTESSYFSFVQTWKDEKEILLLHTKVDLV 290 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~---~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlV 290 (533)
|++++++|+|+.|++++++.+++.++++||.+ +++++++++.... ........+. . ....++...+|+|
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~D~v 72 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGCH----I---VNKTELGQYCDLV 72 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhcccccccc----c---cchhhcCcCCCEE
Confidence 46778999999999999999999999999976 7899999753221 0000000000 0 0112344579999
Q ss_pred EEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccc
Q 009486 291 VTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDP 370 (533)
Q Consensus 291 IvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~ 370 (533)
|+||||||||+|+|.+....+||+|||+|+||||++++++++++.|+++++|+|.+++|+||++++.+++.. ...
T Consensus 73 i~lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~~~-----~~~ 147 (296)
T PRK04539 73 AVLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKT-----AER 147 (296)
T ss_pred EEECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCceEEEeeeEEEEEEECCee-----eee
Confidence 999999999999999998899999999999999999999999999999999999999999999998765421 234
Q ss_pred eeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCee
Q 009486 371 ILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLI 450 (533)
Q Consensus 371 ~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlV 450 (533)
.+||||++|.++..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~rplV 227 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIA 227 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecCcCcccCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccC
Q 009486 451 LPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 522 (533)
Q Consensus 451 lp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~ 522 (533)
+|++++|+|++.. . .++.+++||+....|.+||+|.|++|+++++++. ..+++||++||+||+||.+.
T Consensus 228 l~~~~~i~i~~~~-~-~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~li~--~~~~~f~~~Lr~KL~w~~~~ 295 (296)
T PRK04539 228 IPDTSEIEILVTQ-G-GDARVHFDGQTHIDVQNLDRITIRRYRNPLRILH--PTDYQYFKTLRQKLHWGEQL 295 (296)
T ss_pred ECCCCEEEEEEcC-C-CcEEEEEcCCceeecCCCCEEEEEECCCceEEEE--cCCCcHHHHHHHHhcCCccc
Confidence 9999999998853 2 4689999999999999999999999999999975 46789999999999999753
No 6
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-72 Score=573.66 Aligned_cols=291 Identities=24% Similarity=0.457 Sum_probs=250.4
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+|++|+.++++.+++.++.+||.+ .++++++++..+..+.............. +...+...+|+||+|||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dlvi~lGGDGT~ 77 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFHPSYDTFS---DNEELDGSADMVISIGGDGTF 77 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhcccccccccccccc---chhhcccCCCEEEEECCcHHH
Confidence 59999999999999999999999976 78999998765543321100000000000 112344578999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEEe
Q 009486 300 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 379 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI 379 (533)
|+|+|.+....+||+|||+|+||||++++++++++.|+++++|+|.+++|+||++++.+. . .....+|||||+|
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~~~~~-~-----~~~~~~alNdvvi 151 (292)
T PRK01911 78 LRTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYTIEERSLLQLESNPK-L-----FGELNFALNEIAI 151 (292)
T ss_pred HHHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCceEEEEeeEEEEEcCC-c-----ceeeeEEEEEEEE
Confidence 999999998899999999999999999999999999999999999999999999986321 1 1124689999999
Q ss_pred ccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEE
Q 009486 380 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 459 (533)
Q Consensus 380 ~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I 459 (533)
.|+..++|+.+++||||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++++|+|
T Consensus 152 ~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~RplVl~~~~~I~i 231 (292)
T PRK01911 152 LKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTEITL 231 (292)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEecccCccCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccCCC
Q 009486 460 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKTQ 524 (533)
Q Consensus 460 ~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~~q 524 (533)
++.... ..+.+++||+. ..|.+||.|+|++|+.+++++++ .+++||++||+||+||.++|.
T Consensus 232 ~~~~~~-~~~~l~~DG~~-~~l~~gd~v~i~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~~~~~~ 292 (292)
T PRK01911 232 EVESRS-DNFLVSLDSRS-ETVDNGTELTIKKADFTIKLVEL--NNHSFLKTLRNKLLWGEDKRN 292 (292)
T ss_pred EEecCC-CceEEEEeCCe-eecCCCCEEEEEECCCeEEEEEe--CCCcHHHHHHHHcCCCCcCCC
Confidence 885432 35789999998 68999999999999999999865 578999999999999988763
No 7
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.6e-72 Score=569.32 Aligned_cols=277 Identities=23% Similarity=0.430 Sum_probs=248.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
+++|+|++|+.+ ++.+++.++.+||.+ +++++++++..+..+... .+ ...++..++|+||+|||||
T Consensus 10 ~~~i~ii~~~~~-~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~Dlvi~iGGDG 75 (287)
T PRK14077 10 IKKIGLVTRPNV-SLDKEILKLQKILSI-YKVEILLEKESAEILDLP--GY----------GLDELFKISDFLISLGGDG 75 (287)
T ss_pred CCEEEEEeCCcH-HHHHHHHHHHHHHHH-CCCEEEEecchhhhhccc--cc----------chhhcccCCCEEEEECCCH
Confidence 778999999986 999999999999976 689999988665443210 00 0123345799999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeE
Q 009486 298 TVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 377 (533)
Q Consensus 298 TlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEV 377 (533)
|||+|+|.+....+||+|||+|+||||+++++++++++|+++++|+|.+++|++|+|.+.+.++. ....+||||+
T Consensus 76 T~L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~ie~r~~L~~~v~~~~~~-----~~~~~AlNev 150 (287)
T PRK14077 76 TLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFEIEKPYMLSVFLEKKQGK-----ILEKLAFNDV 150 (287)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCeEEEEEEEEEEEEeCCce-----EEEEEEeeee
Confidence 99999999998999999999999999999999999999999999999999999999998765421 1245799999
Q ss_pred EeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEE
Q 009486 378 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTL 457 (533)
Q Consensus 378 vI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I 457 (533)
+|.|+..++|+++++|+||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++++|
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Phsl~~rpiVl~~~~~I 230 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFEV 230 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEecccccccCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCC
Q 009486 458 RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 519 (533)
Q Consensus 458 ~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg 519 (533)
+|++. .++.+++||+....|.+||+|.|++|+.+++++.+ .+++||++||+||+|+
T Consensus 231 ~i~~~----~~~~l~~DG~~~~~l~~~d~i~I~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~ 286 (287)
T PRK14077 231 EFKTK----SDCILCIDGQDRYKMNDFKSIKVGLSDKNVALIRH--KNRDYFQILKEKLHWG 286 (287)
T ss_pred EEEEC----CCEEEEEcCCeeEecCCCCEEEEEECCCEEEEEEC--CCCCHHHHHHHHhCCC
Confidence 99863 26899999999999999999999999999998754 6789999999999997
No 8
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-71 Score=566.56 Aligned_cols=289 Identities=27% Similarity=0.468 Sum_probs=255.3
Q ss_pred cCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 215 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
+..+++|+||+|+.++++.+++.++++||.+ +++++++++..+..+.... . . ..+..++..++|+||+||
T Consensus 2 ~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~--~---~----~~~~~~~~~~~d~vi~lG 71 (292)
T PRK03378 2 NNHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQLKN--V---K----TGTLAEIGQQADLAIVVG 71 (292)
T ss_pred CccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc--c---c----ccchhhcCCCCCEEEEEC
Confidence 4568899999999999999999999999976 6899999876554321000 0 0 001123445799999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeE
Q 009486 295 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVL 374 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~AL 374 (533)
||||||+|+|.+....+||+|||+|+||||+++++++++++|+++++|+|.+++|++|+|++.+++.. ....+||
T Consensus 72 GDGT~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~aL 146 (292)
T PRK03378 72 GDGNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHYISEKRFLLEAQVCRHGQQ-----KRISTAI 146 (292)
T ss_pred CcHHHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCceEEEEEEEEEEEEeCCce-----EEeEEEE
Confidence 99999999999988899999999999999999999999999999999999999999999999765421 2356899
Q ss_pred EeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCC
Q 009486 375 NEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEH 454 (533)
Q Consensus 375 NEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~ 454 (533)
||++|.++..++|+++++++||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++
T Consensus 147 Ndvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI~Phsl~~rplVl~~~ 226 (292)
T PRK03378 147 NEVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIDSS 226 (292)
T ss_pred EEEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEecccccCCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCcc
Q 009486 455 VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 521 (533)
Q Consensus 455 ~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r 521 (533)
++|+|++... ...+.+++||+....|.+||+|.|++|+++++++++ .+++||++||+||+||..
T Consensus 227 ~~i~i~~~~~-~~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~~~ 290 (292)
T PRK03378 227 STIRLKFSPN-RSDLEISCDSQIALPIQPGEEVLIRRSDYHLNLIHP--KDYSYFNTLRTKLGWSKK 290 (292)
T ss_pred CEEEEEEccC-CCcEEEEECCceEEEcCCCcEEEEEECCCEEEEEEc--CCCCHHHHHHHHcCCCCC
Confidence 9999998642 346899999999999999999999999999999864 578999999999999954
No 9
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.6e-71 Score=568.76 Aligned_cols=296 Identities=22% Similarity=0.318 Sum_probs=255.6
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCccc---ccccccchHHHhhhCCCccEEEE
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFS---FVQTWKDEKEILLLHTKVDLVVT 292 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~---~i~~~~~~~~~~~~~~~~DlVIv 292 (533)
++|++|+||+|+.++++.+++.++++||.+ .++++++++..+..+........ ....+. ....+..++|+||+
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD---ADPDAADGCELVLV 78 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc---chhhcccCCCEEEE
Confidence 678999999999999999999999999976 68999998765443221000000 000000 01233456899999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeeccccccccccccee
Q 009486 293 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPIL 372 (533)
Q Consensus 293 LGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ 372 (533)
||||||||+|+|.+....+||+|||+|+||||+++++++++++|+++++|+|.+++|+||+|++.+++.. ....+
T Consensus 79 lGGDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~R~~L~~~v~~~g~~-----~~~~~ 153 (306)
T PRK03372 79 LGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDYRVEERMTLDVTVRVGGEI-----VWRGW 153 (306)
T ss_pred EcCCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCceEEEeeeEEEEEEECCEE-----Eeeee
Confidence 9999999999999998999999999999999999999999999999999999999999999998765421 12457
Q ss_pred eEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeC
Q 009486 373 VLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILP 452 (533)
Q Consensus 373 ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp 452 (533)
||||++|.++..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Ph~l~~RplVv~ 233 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVVS 233 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecccccCCCCCeEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccCC
Q 009486 453 EHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKT 523 (533)
Q Consensus 453 ~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~~ 523 (533)
++++|+|++.... .++.+++||+....|.+||+|.|++|+++++++.+ .+++||++||+||.|..-.+
T Consensus 234 ~~~~I~i~~~~~~-~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~--~~~~f~~~Lr~KL~~~~~~~ 301 (306)
T PRK03372 234 PTSTVAVEILADT-SDAVLWCDGRRSVDLPPGARVEVRRGATPVRLARL--DSAPFTDRLVRKFRLPVTGW 301 (306)
T ss_pred CCCEEEEEEecCC-CcEEEEEcCCeeEecCCCCEEEEEECCCeEEEEEe--CCCCHHHHHHHHcCCCCCcc
Confidence 9999999986433 46899999999999999999999999999999865 56899999999999995433
No 10
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7.9e-70 Score=554.11 Aligned_cols=289 Identities=28% Similarity=0.453 Sum_probs=254.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
+++|+||+|+.++.+.++++++.+||.+ .++++++++.....+.... .. . .....+...+|+||++||||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~~--~~----~---~~~~~~~~~~d~vi~~GGDG 73 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGHG--LQ----T---VSRKLLGEVCDLVIVVGGDG 73 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc--cc----c---cchhhcccCCCEEEEEeCcH
Confidence 6789999999999999999999999976 6899999875543321110 00 0 00122345689999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeE
Q 009486 298 TVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 377 (533)
Q Consensus 298 TlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEV 377 (533)
|+|++++.+....+||+|||+|+||||+++++++++++|+++++|+|.+++|+||+|.+.+.+.. ...++||||+
T Consensus 74 t~l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~ALNev 148 (295)
T PRK01231 74 SLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHYQEEERFLLEAEVRRGGEV-----IGQGDALNDV 148 (295)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCceEEEEEEEEEEEEECCcE-----EeeeeEEEEE
Confidence 99999999988899999999999999999999999999999999999999999999998764321 1246899999
Q ss_pred EeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEE
Q 009486 378 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTL 457 (533)
Q Consensus 378 vI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I 457 (533)
+|.++..++|++++++|||+++++|+|||||||||||||||+||||||||+|++++|++||||||+|++||+|+|++++|
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ph~l~~rpiVl~~~~~I 228 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCCCccCCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccCC
Q 009486 458 RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKT 523 (533)
Q Consensus 458 ~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~~ 523 (533)
+|++....+..+.+++||+....|.+||+|.|++++.+++++.+ .+++||++||+||+||.+.-
T Consensus 229 ~i~~~~~~~~~~~l~~DG~~~~~l~~g~~i~i~~s~~~~~l~~~--~~~~f~~~l~~KL~w~~~~~ 292 (295)
T PRK01231 229 KIVISKDNRTYPRVSCDGQNSVTLAPGDTVTIRKKPQKLRLIHP--LDYNYYETCRTKLGWGSRLG 292 (295)
T ss_pred EEEEccCCCCceEEEeCCCceEecCCCCEEEEEECCCeEEEEEc--CCCCHHHHHHHhcCCCCCcc
Confidence 99986444456899999999999999999999999999998754 67899999999999998653
No 11
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=3.6e-69 Score=548.33 Aligned_cols=288 Identities=27% Similarity=0.456 Sum_probs=253.0
Q ss_pred cCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 215 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
..++++|+|+.|+.++.+.+++.++++||++ .+++++++...+....... +. .. ...++...+|+||++|
T Consensus 2 ~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~~--~~---~~----~~~~~~~~~d~vi~~G 71 (291)
T PRK02155 2 KSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGLTG--YP---AL----TPEEIGARADLAVVLG 71 (291)
T ss_pred CCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc--cc---cc----ChhHhccCCCEEEEEC
Confidence 3457899999999999999999999999976 6899999875544321100 00 00 1123345689999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeE
Q 009486 295 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVL 374 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~AL 374 (533)
||||||+++|.+...++|++|||+|+||||++++++++++.|+++++|+|.+++|+||+|++.+++.. ...++||
T Consensus 72 GDGt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~Al 146 (291)
T PRK02155 72 GDGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYEEEERMLLEARVVRDGEP-----IFHALAF 146 (291)
T ss_pred CcHHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCceEEEeEEEEEEEEECCeE-----EEeeeee
Confidence 99999999999988899999999999999999999999999999999999999999999998755321 1245899
Q ss_pred EeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCC
Q 009486 375 NEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEH 454 (533)
Q Consensus 375 NEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~ 454 (533)
||++|.++..++|++++++|||+++.+|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|++
T Consensus 147 Nev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~p~~l~~rpiVl~~~ 226 (291)
T PRK02155 147 NDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDD 226 (291)
T ss_pred eheeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecCcCccCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCcc
Q 009486 455 VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 521 (533)
Q Consensus 455 ~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r 521 (533)
++|+|++.. . .++.+++||+....+.+||+|.|++++.+++++.+ .+++||++||+||+||..
T Consensus 227 ~~i~i~~~~-~-~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~~~~--~~~~f~~~l~~Kl~w~~~ 289 (291)
T PRK02155 227 SEVAIQIVG-G-RDVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHP--VGYSYYATLRKKLHWNEG 289 (291)
T ss_pred CEEEEEEcC-C-CcEEEEEcCCcceeCCCCCEEEEEECCCeEEEEec--CCCCHHHHHHHhcCCCCC
Confidence 999999864 3 36899999999999999999999999999998754 678999999999999953
No 12
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4.1e-69 Score=543.19 Aligned_cols=269 Identities=25% Similarity=0.434 Sum_probs=234.5
Q ss_pred HHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEE
Q 009486 236 CAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVP 315 (533)
Q Consensus 236 ~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILG 315 (533)
++++.+||.+ +|+++++++..+..+... .. .+ ....++..++|+||+||||||||+|+|.+...++||+|
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~~~--~~----~~---~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~Pilg 71 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLNLP--EN----HL---ASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIG 71 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcCcc--cc----cc---CChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEE
Confidence 5789999976 689999987655432110 00 00 01123445789999999999999999999888999999
Q ss_pred EeCCCCccCccCCcchHHHHHHHHHc-CCceEEEEeeeeEEEeecccccccccccceeeEEeEEeccCCCcceEEEEEEE
Q 009486 316 FSLGSLGFMTPFHSEHYKDYLDSVLR-GPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYC 394 (533)
Q Consensus 316 IN~G~LGFLt~~~~ed~~~~L~~ll~-G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~I 394 (533)
||+|+||||++++++++.+.|+++++ |+|.+++|+||+|++.+++.. ....+||||++|.++..++|++++++|
T Consensus 72 In~G~lGFL~~~~~~~~~~~l~~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 72 INRGNLGFLTDIDPKNAYEQLEACLERGEFFVEERFLLEAKIERNGKI-----IATSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred EeCCCCcccccCCHHHHHHHHHHHHhcCCceEEEeeeEEEEEEECCeE-----eeeeEEEEEEEEecCCCCceEEEEEEE
Confidence 99999999999999999999999998 999999999999998754321 124689999999999999999999999
Q ss_pred CCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEEEeccCCCCCEEEEEc
Q 009486 395 DNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFD 474 (533)
Q Consensus 395 dg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I~v~~~~r~~a~vsiD 474 (533)
||+++.+|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++++|+|++.......+.+++|
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~Phsl~~RpiVl~~~~~I~i~~~~~~~~~~~l~~D 226 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAEYNTPQLEVSCD 226 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEeccccccCCCCEEECCCCEEEEEEcCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985433345889999
Q ss_pred CCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCcc
Q 009486 475 GKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 521 (533)
Q Consensus 475 G~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r 521 (533)
|+....|.+||+|.|++|+.+++++++ .+++||++||+||+|+.+
T Consensus 227 G~~~~~l~~~d~v~I~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~~~ 271 (272)
T PRK02231 227 SQIALPFTPDDRVHVQKSPDKLRLLHL--KNYNYYNVLSSKLGWLKK 271 (272)
T ss_pred CCeEEEeCCCcEEEEEEcCCEEEEEEc--CCCCHHHHHHHHhCCCCC
Confidence 999999999999999999999999865 578999999999999953
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.2e-67 Score=529.25 Aligned_cols=265 Identities=23% Similarity=0.380 Sum_probs=235.5
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+|++|+.++++.+++.++++|| + .+++++++...+..+... . . ...+. ++|+||+|||||||
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~~~--~------~----~~~~~--~~D~vi~lGGDGT~ 65 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALGMD--G------L----DIEEI--NADVIITIGGDGTI 65 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcCcc--c------C----ccccc--CCCEEEEEcCcHHH
Confidence 499999999999999999999999 4 589999887654432110 0 0 00111 68999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEEe
Q 009486 300 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 379 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI 379 (533)
|+|+|.+. +||+|||+|+||||++++++++++.|+++++|+|.+++|+||++.+. +. ...+||||++|
T Consensus 66 L~a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~v~--g~-------~~~~aLNdvvv 133 (271)
T PRK01185 66 LRTLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYFIDERMKLKVYIN--GE-------RLEDCTNEAVI 133 (271)
T ss_pred HHHHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCcEEEEeeEEEEEEC--Cc-------EeEEEEEEEEE
Confidence 99999874 49999999999999999999999999999999999999999999982 11 13479999999
Q ss_pred ccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEE
Q 009486 380 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 459 (533)
Q Consensus 380 ~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I 459 (533)
.++..++|+++++||||+++.+|+|||||||||||||||||||||||++|.+++|++||||||+++.||+|+|++++|+|
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~rplVl~~~~~I~i 213 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEI 213 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecccCCCCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhC
Q 009486 460 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLH 517 (533)
Q Consensus 460 ~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~ 517 (533)
++.. ..++.+++||+....|.+||+|+|++|+++++++.+ .+ +||++||+||.
T Consensus 214 ~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~v~~--~~-~f~~~Lr~KL~ 266 (271)
T PRK01185 214 KIAG--DQSSLLILDGQYEYKISKGDTVEISKSENYARFISF--RE-SPYDRIREKLI 266 (271)
T ss_pred EEcC--CCCEEEEECCCceEecCCCCEEEEEECCCeeEEEEc--CC-CHHHHHHHHHh
Confidence 9854 346899999999999999999999999999999875 34 89999999985
No 14
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.1e-66 Score=533.08 Aligned_cols=294 Identities=28% Similarity=0.405 Sum_probs=250.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
++++|+||+|+.++.+.+.+.++.+||.+ .|++++++.......... .+ .......+|+||++|||
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~--------~~-----~~~~~~~~d~vi~~GGD 67 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNPYP--------VF-----LASASELIDLAIVLGGD 67 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhcccc--------ch-----hhccccCcCEEEEECCc
Confidence 36789999999999999999999999975 689988876433311100 00 01223468999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEeC-CCCccCccCC--cchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceee
Q 009486 297 GTVLWAASIFKGPVPPIVPFSL-GSLGFMTPFH--SEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILV 373 (533)
Q Consensus 297 GTlL~aar~~~~~~~PILGIN~-G~LGFLt~~~--~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~A 373 (533)
||||++++.+.+.++||+|||+ |+||||+++. .++ ++.|+++++|+|.+++|+||+|++.+++..+.......++|
T Consensus 68 GT~l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~i~~r~~L~~~~~~~~~~~~~~~~~~~~A 146 (305)
T PRK02645 68 GTVLAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRYAIERRMMLQARVFEGDRSNEEPVSESYYA 146 (305)
T ss_pred HHHHHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCceEEEeeEEEEEEEeCCcccccccccceEE
Confidence 9999999999888999999999 8999999985 344 88999999999999999999999876432111111235689
Q ss_pred EEeEEeccCCCcceEE--EEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeee
Q 009486 374 LNEVTIDRGISSYLTN--LECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 451 (533)
Q Consensus 374 LNEVvI~rg~~s~mi~--lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVl 451 (533)
|||++|.++..++++. ++++|||+++.+|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+
T Consensus 147 lNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~l~~rplVl 226 (305)
T PRK02645 147 LNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPIVI 226 (305)
T ss_pred EeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCcccccCCCEEE
Confidence 9999999988888764 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccCCCCC
Q 009486 452 PEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKTQSS 526 (533)
Q Consensus 452 p~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~~q~~ 526 (533)
|++++|+|++.......+.+++||+....|.+||+|.|++++.+++++.+ ...++||+.||+||+|+.+..|+.
T Consensus 227 p~~~~i~i~~~~~~~~~~~l~~DG~~~~~l~~~~~i~i~~s~~~~~~v~~-~~~~~f~~~L~~Kl~w~~~~~~~~ 300 (305)
T PRK02645 227 PPGSRVVIWPLGDYDLNIKLWKDGVLATSIWPGQRCVIQKARHPAKFIIL-EESYSYYRTLREKLHWAGSLIHYN 300 (305)
T ss_pred CCCCEEEEEEcCCCCCcEEEEECCCcceecCCCCEEEEEECCCceEEEEe-CCCCCHHHHHHHHcCCCCcccccc
Confidence 99999999875433245889999999999999999999999999999875 334699999999999999988874
No 15
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.3e-66 Score=567.81 Aligned_cols=288 Identities=27% Similarity=0.477 Sum_probs=254.1
Q ss_pred EEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccE
Q 009486 210 ISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDL 289 (533)
Q Consensus 210 ~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~Dl 289 (533)
+.-+|.++|++|+||+|+.++++.+++.++++||.+ .++++++++..+..+..... ..+. .... ..++|+
T Consensus 282 l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~~~-----~~~~---~~~~-~~~~dl 351 (569)
T PRK14076 282 FGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNRLN-----EECN---LIDD-IEEISH 351 (569)
T ss_pred hhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccccc-----cccc---cccc-ccCCCE
Confidence 347999999999999999999999999999999976 68999998765543321000 0000 0011 236899
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeeccccccccccc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIED 369 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~ 369 (533)
||+||||||||+++|.+....+||+|||+|+||||++++++++.+.|+++++|+|.+++|+||+|++.+++.. ..
T Consensus 352 vi~lGGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~ 426 (569)
T PRK14076 352 IISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEYEIEKRTKLSGFILKDGHQ-----NI 426 (569)
T ss_pred EEEECCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCceEEEeEEEEEEEEECCcc-----ee
Confidence 9999999999999999998999999999999999999999999999999999999999999999999865421 23
Q ss_pred ceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCe
Q 009486 370 PILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPL 449 (533)
Q Consensus 370 ~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPl 449 (533)
..+||||++|.|+..++|++++|||||+++++|+||||||||||||||||||||||||+|.+++|++||||||++++||+
T Consensus 427 ~~~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tPI~ph~l~~rpl 506 (569)
T PRK14076 427 LPSALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRPL 506 (569)
T ss_pred eeEEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEeeccCCCCCCCE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCC
Q 009486 450 ILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 519 (533)
Q Consensus 450 Vlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg 519 (533)
|+|++++|+|++.. .++.+++||+....|.+||+|.|++|++++++++. .+||++||+||+-|
T Consensus 507 V~~~~~~i~i~~~~---~~~~l~~DG~~~~~l~~gd~I~I~~s~~~~~~v~~----~~f~~~Lr~Kl~~~ 569 (569)
T PRK14076 507 VVSANSEIKIKLLK---KSALVVIDGSIEFEAKKGDEIIFRKSDSYAYFVKG----DNFYNKLKKLSLMG 569 (569)
T ss_pred EECCCCEEEEEEeC---CcEEEEECCceeeecCCCCEEEEEECCceEEEEec----chHHHHHHHHhCCC
Confidence 99999999998842 46899999999999999999999999999999863 37999999999854
No 16
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.7e-65 Score=514.92 Aligned_cols=255 Identities=18% Similarity=0.316 Sum_probs=229.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
+++|+|+.++.+ .+.+++.++.+||++ .|++++++ ..++|+||+|||||
T Consensus 2 ~~~i~iv~~~~~-~a~~~~~~l~~~l~~-~g~~~~~~-----------------------------~~~~D~vi~lGGDG 50 (264)
T PRK03501 2 RRNLFFFYKRDK-ELVEKVKPLKKIAEE-YGFTVVDH-----------------------------PKNANIIVSIGGDG 50 (264)
T ss_pred CcEEEEEECCCH-HHHHHHHHHHHHHHH-CCCEEEcC-----------------------------CCCccEEEEECCcH
Confidence 458999999888 899999999999976 57776532 02479999999999
Q ss_pred HHHHHHHhcCCC-CCcEEEEeC-CCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEE
Q 009486 298 TVLWAASIFKGP-VPPIVPFSL-GSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLN 375 (533)
Q Consensus 298 TlL~aar~~~~~-~~PILGIN~-G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALN 375 (533)
|||+|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+|.+++|++|++.+. +. ...+|||
T Consensus 51 T~L~a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~v~--~~-------~~~~alN 121 (264)
T PRK03501 51 TFLQAVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEIEVRKYPTIEVTVD--GS-------TSFYCLN 121 (264)
T ss_pred HHHHHHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCcEEEEeeeEEEEEC--Cc-------cceEEEE
Confidence 999999998765 789999999 999999999999999999999999999999999999872 11 1458999
Q ss_pred eEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCC-C----CCee
Q 009486 376 EVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS-F----RPLI 450 (533)
Q Consensus 376 EVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs-~----RPlV 450 (533)
|++| ++..++|+.++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+++ + ||+|
T Consensus 122 evvi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~rpiV 200 (264)
T PRK03501 122 EFSI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLGSPFI 200 (264)
T ss_pred EEEE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCCCCEE
Confidence 9999 77788999999999999999999999999999999999999999999999999999999999987 5 9999
Q ss_pred eCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhh
Q 009486 451 LPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGL 516 (533)
Q Consensus 451 lp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL 516 (533)
+|++++|+|++.......+.+++||+. .+|.+||+|.|++|+.+++++++ .+++||++||+|+
T Consensus 201 l~~~~~I~i~~~~~~~~~~~l~~DG~~-~~l~~~d~i~I~~s~~~~~lv~~--~~~~f~~~Lr~Kf 263 (264)
T PRK03501 201 LSHERKLTLKIVQDGNDYPIIGMDNEA-LSIKHVEKIDIRLSDKQIKTVKL--KDNSFWEKVKRTF 263 (264)
T ss_pred ECCCCEEEEEEecCCCCcEEEEEeCCE-EEcCCCCEEEEEECCCEEEEEEe--CCCCHHHHHHHhh
Confidence 999999999986433345789999998 99999999999999999999865 5689999999997
No 17
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.3e-65 Score=516.05 Aligned_cols=274 Identities=27% Similarity=0.460 Sum_probs=240.4
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCchH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDGT 298 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDGT 298 (533)
+|+||.|+.++++.+++.++.+||++ .++++.+++........ +.. ...... ..++|+||++|||||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~----~~~-------~~~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPE----FSE-------EDVLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc----ccc-------cccccccccCCCEEEEEeCcHH
Confidence 69999999999999999999999976 68999987543322110 000 000011 136899999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEE
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 378 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVv 378 (533)
+|+++| +....+||+|||+|++|||++++++++.+.|+++++|+|.+++|++|++.+. + . ..++||||++
T Consensus 70 lL~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~~~--~-~------~~~~alNdv~ 139 (277)
T PRK03708 70 ILRIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDYFIDERIKLRVYIN--G-E------NVPDALNEVV 139 (277)
T ss_pred HHHHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCceEEEeEEEEEEEC--C-e------EeEEEeeeEE
Confidence 999999 6677999999999999999999999999999999999999999999999872 1 1 1467999999
Q ss_pred eccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEE
Q 009486 379 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 458 (533)
Q Consensus 379 I~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~ 458 (533)
|.++..++|++++++|||+++.+|+|||||||||||||||+||||||||||++++|++||||||+++.||+|+|++++|+
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~p~~l~~rplV~~~~~~i~ 219 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRID 219 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecccccCCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCC
Q 009486 459 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 519 (533)
Q Consensus 459 I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg 519 (533)
|++.... .++.+++||+....+.+|++|.|++|+++++++.+ . ++||++||+||.|.
T Consensus 220 l~~~~~~-~~~~l~~DG~~~~~l~~~~~v~i~~s~~~~~~~~~--~-~~f~~~lr~KL~~~ 276 (277)
T PRK03708 220 VKLLRTG-REIILVIDGQYYEELPPDTEITIKKSPRKTKFVRF--S-KEIYPKYTMKIKER 276 (277)
T ss_pred EEEecCC-CcEEEEECCCeeEecCCCCEEEEEECCCeEEEEec--C-CcHHHHHHHHhhhc
Confidence 9875433 36889999999999999999999999999999865 3 69999999999995
No 18
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-65 Score=515.56 Aligned_cols=281 Identities=35% Similarity=0.604 Sum_probs=252.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++|+|+.|++++++...++.+..|+.. .+..+.+++..+..+... .. .. ....+.+|+|+++|||||
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~---~~----~~-----~~~~~~~d~ivvlGGDGt 67 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF---AD----YV-----DDDEEKADLIVVLGGDGT 67 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc---cc----cc-----cccccCceEEEEeCCcHH
Confidence 479999999999999999999999975 688899888777655421 00 00 011267999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEE
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 378 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVv 378 (533)
+|+++|++...++||+|||+|+|||||+++++++++.++++++|+|.+++|+||++.+.+.+ ....+||||++
T Consensus 68 lL~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~v~~~~-------~~~~~aLNEv~ 140 (281)
T COG0061 68 LLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEYRIEERLLLEVSVNRGD-------IRRALALNEVV 140 (281)
T ss_pred HHHHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCceEEEEeEEEEEEEEeCC-------ccccceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998753 24688999999
Q ss_pred eccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEE
Q 009486 379 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 458 (533)
Q Consensus 379 I~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~ 458 (533)
|.++..++|+.+++|+||+++++++||||||||||||||||||||||||+|.+++|+|||||||++++||+|+|..++|+
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p~~l~~Rpiv~p~~~~v~ 220 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVR 220 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecCCCcccCCCEEECCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCc
Q 009486 459 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNL 520 (533)
Q Consensus 459 I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~ 520 (533)
+++....+..+++++||+....+.+|++|.|++++++++++.... ..+||++|++||+|+.
T Consensus 221 i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 281 (281)
T COG0061 221 IEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRS-YDDFFERLRSKLIWGV 281 (281)
T ss_pred EEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCC-cccHHHHHHHHhcCCC
Confidence 998765556679999999999999999999999999999976432 2389999999999984
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.5e-63 Score=498.56 Aligned_cols=251 Identities=23% Similarity=0.374 Sum_probs=224.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+|+.+ .++++.+++.++.+||.+ .|+++ + ..++|+||+|||||||
T Consensus 2 ~i~Ii~~-~~~~~~~~~~~l~~~l~~-~g~~~--~-----------------------------~~~~Dlvi~iGGDGT~ 48 (265)
T PRK04885 2 KVAIISN-GDPKSKRVASKLKKYLKD-FGFIL--D-----------------------------EKNPDIVISVGGDGTL 48 (265)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHHHH-cCCcc--C-----------------------------CcCCCEEEEECCcHHH
Confidence 4999999 788999999999999975 45541 1 0247999999999999
Q ss_pred HHHHHhcCC--CCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeE
Q 009486 300 LWAASIFKG--PVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 377 (533)
Q Consensus 300 L~aar~~~~--~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEV 377 (533)
|+|+|.+.+ ..+||+|||+|+||||++++++++++.|+++++|+|.+++|++|++++.++++. ....+||||+
T Consensus 49 L~a~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~r~~L~~~v~~~~~~-----~~~~~alNev 123 (265)
T PRK04885 49 LSAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQVVSYPLLEVKITYEDGE-----KEKYLALNEA 123 (265)
T ss_pred HHHHHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCceEEEEeeEEEEEEeCCCc-----Eeeeeeeeee
Confidence 999999987 689999999999999999999999999999999999999999999998764321 1246899999
Q ss_pred EeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCC-------Cee
Q 009486 378 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFR-------PLI 450 (533)
Q Consensus 378 vI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~R-------PlV 450 (533)
+|.++. +++.++++|||+++.+|+|||||||||||||||||||||||++|.+++|++||||| ++.| |+|
T Consensus 124 ~i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~--l~~r~~~~~~~plV 199 (265)
T PRK04885 124 TIKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIAS--INNRVFRTLGSPLI 199 (265)
T ss_pred eeccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeecc--ccccccccCCCCEE
Confidence 999865 69999999999999999999999999999999999999999999999999999997 4455 999
Q ss_pred eCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhC
Q 009486 451 LPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLH 517 (533)
Q Consensus 451 lp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~ 517 (533)
+|++++|+|++.. ...+.+++||+. ..+.+||+|.|++|+.+++++.+ .+++||++||+||-
T Consensus 200 l~~~~~I~i~~~~--~~~~~l~~DG~~-~~l~~~d~i~i~~s~~~~~li~~--~~~~f~~~Lr~Kf~ 261 (265)
T PRK04885 200 LPKHHTITLKPVN--DDDYQITVDHLT-IKHKNVKSIEYRVANEKIRFARF--RHFPFWKRVKDSFI 261 (265)
T ss_pred ECCCCEEEEEEcC--CCcEEEEECCCE-eecCCCCEEEEEECCceEEEEEc--CCCCHHHHHHHHhc
Confidence 9999999998753 346899999999 99999999999999999999865 56899999999974
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.7e-61 Score=484.07 Aligned_cols=254 Identities=24% Similarity=0.337 Sum_probs=225.5
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+++|++|+. +.+.+.++.+||.+ .++.+..+.+.. ....++|+||++||||||
T Consensus 2 ~~~~~~~~~---~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------------------~~~~~~d~vi~iGGDGT~ 54 (256)
T PRK14075 2 KLGIFYREE---KEKEAKFLKEKISK-EHEVVEFCEASA-----------------------SGKVTADLIIVVGGDGTV 54 (256)
T ss_pred EEEEEeCcc---HHHHHHHHHHHHHH-cCCeeEeecccc-----------------------cccCCCCEEEEECCcHHH
Confidence 578886665 56778999999976 567766553211 112468999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEEe
Q 009486 300 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 379 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI 379 (533)
|+|+|.+ .+||+|||+|+||||++++++++++.|+++++|+|.+++|++|++++.. ...+||||++|
T Consensus 55 L~a~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~----------~~~~alNev~i 121 (256)
T PRK14075 55 LKAAKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNFREEKRWFLKIESEL----------GNHLALNDVTL 121 (256)
T ss_pred HHHHHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCcEEEEeeEEEEEEcC----------CcEEEEEEEEE
Confidence 9999998 7899999999999999999999999999999999999999999998742 13589999999
Q ss_pred ccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEE
Q 009486 380 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 459 (533)
Q Consensus 380 ~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I 459 (533)
.++.+++|+++++++||+.+.+|+||||||||||||||||||||||||+|+++++.+||||||+++.||+|+|.+.+|+|
T Consensus 122 ~~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI~Ph~L~~rpiVlp~~~~I~I 201 (256)
T PRK14075 122 ERDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTV 201 (256)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeeeehhhcCCCceEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccC
Q 009486 460 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 522 (533)
Q Consensus 460 ~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~ 522 (533)
++. .++.+.+||+. +..++.|+|++++..+++++ +.+++||++||+||+||.|.
T Consensus 202 ~~~----~~~~l~iDGe~---~~~~~~I~I~~s~~~l~li~--~~~~~f~~~l~~kl~w~~~~ 255 (256)
T PRK14075 202 ESQ----RDINLIVDGVL---VGKTNRITVKKSRRYVRILR--PKDYDFVTVIKEKLGYGRRI 255 (256)
T ss_pred EEC----CceEEEECCCC---cCCCcEEEEEECCCEEEEEE--cCCCCHHHHHHHHhcCCcCC
Confidence 863 35789999986 56889999999999999875 45789999999999999864
No 21
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2e-60 Score=476.86 Aligned_cols=245 Identities=21% Similarity=0.316 Sum_probs=211.7
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
++.|++++. +.+.+++.++.++++. .++ ...++|+||+|||||||
T Consensus 2 ~~~i~~~~~-~~s~~~~~~l~~~~~~-~~~---------------------------------~~~~~D~vi~iGGDGT~ 46 (259)
T PRK00561 2 KYKIFASTT-PQTEPVLPKLKKVLKK-KLA---------------------------------VEDGADYLFVLGGDGFF 46 (259)
T ss_pred EEEEEeCCC-HHHHHHHHHHHHHHhh-CCC---------------------------------ccCCCCEEEEECCcHHH
Confidence 578888854 4566777777777643 111 01348999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHH-HHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEE
Q 009486 300 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKD-YLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 378 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~-~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVv 378 (533)
|+|+|.+....+||+|||+|+||||++++++++++ .++.+.+ |.+++|++|++.+.+ ...+||||++
T Consensus 47 L~a~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~~~~~r~~L~~~~~~----------~~~~AlNE~v 114 (259)
T PRK00561 47 VSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--LKFTQIDLLEVQIDD----------QIHLVLNELA 114 (259)
T ss_pred HHHHHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--CCeEEEEEEEEEECC----------CeeEEEEEEE
Confidence 99999999899999999999999999999999998 7777765 778999999998721 1358999999
Q ss_pred eccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCC-----CCCCCeeeCC
Q 009486 379 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHS-----LSFRPLILPE 453 (533)
Q Consensus 379 I~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhs-----Ls~RPlVlp~ 453 (533)
|.++. ++.++++|||+++++|+|||||||||||||||||||||||++|++++|++||||||+ +..||+|+|+
T Consensus 115 i~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~Ph~~~~~~~~~rplVl~~ 191 (259)
T PRK00561 115 VYTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQSPIILPI 191 (259)
T ss_pred EccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeCCCCcccccccCCCeEECC
Confidence 99865 679999999999999999999999999999999999999999999999999999998 4579999999
Q ss_pred CCEEEEEeccCC--CCCEEEEEcCCcccccCCCCEEEEEecCCCee-EEEeeCCCCChHHHHHhhh
Q 009486 454 HVTLRVQIPFNS--RSPAWASFDGKDRKQLAPGDALVCSMAPWPVP-TACQVDSTDDFFRSIHDGL 516 (533)
Q Consensus 454 ~~~I~I~v~~~~--r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~-li~l~~~~~dff~~LreKL 516 (533)
+++|+|++.... +..+.+++||+....+.+||+|.|++++.+++ ++. ..+++||++||+||
T Consensus 192 ~~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~~~v~--~~~~~f~~~Lr~Kf 255 (259)
T PRK00561 192 DTKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAMFVAS--LKTRDFIQKLKSTF 255 (259)
T ss_pred CCEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccceEEEE--CCCCCHHHHHHHHh
Confidence 999999985322 13578999999999999999999999999999 564 46789999999998
No 22
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=2e-60 Score=481.29 Aligned_cols=274 Identities=38% Similarity=0.636 Sum_probs=232.8
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC-cccccc---------cccchHHHhhhCCCccE
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS-YFSFVQ---------TWKDEKEILLLHTKVDL 289 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~-~~~~i~---------~~~~~~~~~~~~~~~Dl 289 (533)
+||||.||.++++.+.++++++||.++.++.++++..+...+..... ...... .+. .........++|+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~ 79 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTR-NALEEMLEEGVDL 79 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEE-ECCHHHHCCCSSE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccc-hhhhhhcccCCCE
Confidence 69999999999999999999999987548999999887765432100 000000 000 1112234688999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeeccccccccccc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIED 369 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~ 369 (533)
||++|||||+|+++|.+.+..+||+|||+|++|||++++++++.+.|+++++|+|.+++|+||++.+.+.+. .....
T Consensus 80 ii~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~---~~~~~ 156 (285)
T PF01513_consen 80 IIVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEYSIEERMRLEVSVDRKKG---AEIAL 156 (285)
T ss_dssp EEEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHCEEEEEEEEEEEEEETTE----CEEE
T ss_pred EEEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCeEEEEeeeEEEEEecCCc---cceee
Confidence 999999999999999999889999999999999999999999999999999999999999999999987643 01234
Q ss_pred ceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCe
Q 009486 370 PILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPL 449 (533)
Q Consensus 370 ~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPl 449 (533)
.++||||++|.++..++++.+++++|++++++++|||||||||||||||+|||||||++|.+++|++||||||+++.||+
T Consensus 157 ~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tpi~p~~~~~rpi 236 (285)
T PF01513_consen 157 IDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTPICPHSLSNRPI 236 (285)
T ss_dssp EEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEEESESSTT-S-E
T ss_pred eeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEeccccccCCceE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEE
Q 009486 450 ILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTAC 500 (533)
Q Consensus 450 Vlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~ 500 (533)
|+|++++|+|++. +.++.+++||+....+.+||+|.|+++++++++|+
T Consensus 237 Vl~~~~~i~i~~~---~~~~~~~~DG~~~~~~~~~d~i~i~~s~~~~~~ir 284 (285)
T PF01513_consen 237 VLPDDSEIEIKVE---RREAVLAIDGQREIELKPGDEIRIRKSPKPVKLIR 284 (285)
T ss_dssp EEETTSEEEEEEE---SCEEEEEETTTEEEEECTTEEEEEEEECCEEEEEE
T ss_pred EECCCCEEEEEEe---CCCEEEEEECCceEEeCCCcEEEEEEcCCccEEEe
Confidence 9999999999986 45689999999999999999999999999999875
No 23
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=2.9e-54 Score=429.64 Aligned_cols=214 Identities=21% Similarity=0.310 Sum_probs=183.0
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCcc-CCcchHHHHHHHHHcCCceEEEEeeeeEEEeeccccc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTP-FHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKN 363 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~ 363 (533)
.++|+||+||||||||+++|.+....+||+|||+|+||||++ ++++++.+.|+++..+.+ +.|++ ++. ..++.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~~--~~l~~-~~~--~~~~~- 97 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTVL--HPLRM-TAT--DVSGE- 97 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCcE--EEEEE-EEE--ECCCc-
Confidence 358999999999999999999988899999999999999996 899999999999987743 44444 333 22111
Q ss_pred ccccccceeeEEeEEeccCCCcceEEEEEEECCee-EEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCC
Q 009486 364 EIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSF-VTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPH 442 (533)
Q Consensus 364 ~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~-v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPh 442 (533)
....+||||++|.++. .+++.++++|||++ +.+|+|||||||||||||||+||||||||+|.+++|++||||||
T Consensus 98 ----~~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~ 172 (246)
T PRK04761 98 ----VHEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISPF 172 (246)
T ss_pred ----EeeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeeccc
Confidence 1246899999999987 68999999999996 99999999999999999999999999999999999999999999
Q ss_pred CCC-CCCeeeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCC-eeEEEeeCCCCChHHHHHh
Q 009486 443 SLS-FRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWP-VPTACQVDSTDDFFRSIHD 514 (533)
Q Consensus 443 sLs-~RPlVlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~-v~li~l~~~~~dff~~Lre 514 (533)
+++ +||+|+|++++|+|++....+.++.+++||+... .+|+|.|++++.. ++++. ..+++||+.|-.
T Consensus 173 ~~~~~RplVlp~~~~I~i~~~~~~~~~~~l~~DG~~~~---~~~~v~I~~s~~~~~~l~~--~~~~~~~~~~~~ 241 (246)
T PRK04761 173 RPRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEVR---DVVEVTIREDKDITVTLLF--DPGHSLEERILA 241 (246)
T ss_pred CCcCCccEEECCCCEEEEEEecCCCCcEEEEEcCCCcc---cCcEEEEEEcCCccEEEEE--CCCCCHHHHHHH
Confidence 986 9999999999999987643334688999998854 4899999999987 77653 578889988743
No 24
>PLN02929 NADH kinase
Probab=100.00 E-value=7.7e-54 Score=436.65 Aligned_cols=233 Identities=24% Similarity=0.293 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCc
Q 009486 233 QILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPP 312 (533)
Q Consensus 233 ~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~P 312 (533)
...+..+.+||.+ .|+++..... .+ +.....++|+||+||||||||+|+|.+ ...+|
T Consensus 33 ~~~~~~~~~~L~~-~gi~~~~v~r--~~-------------------~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~iP 89 (301)
T PLN02929 33 KDTVNFCKDILQQ-KSVDWECVLR--NE-------------------LSQPIRDVDLVVAVGGDGTLLQASHFL-DDSIP 89 (301)
T ss_pred HHHHHHHHHHHHH-cCCEEEEeec--cc-------------------cccccCCCCEEEEECCcHHHHHHHHHc-CCCCc
Confidence 4456788889976 6777633211 00 012245689999999999999999999 78899
Q ss_pred EEEEeCC------------------CCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeE
Q 009486 313 IVPFSLG------------------SLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVL 374 (533)
Q Consensus 313 ILGIN~G------------------~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~AL 374 (533)
|+|||+| ++|||++++++++++.|+++++|+|.+++|+||++.+... ....+||
T Consensus 90 vlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~~~r~~L~~~v~g~--------~~~~~AL 161 (301)
T PLN02929 90 VLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKPTELSRISTVVNGT--------LLETPAL 161 (301)
T ss_pred EEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceEEEeeeEEEEecCC--------cccceEe
Confidence 9999999 7999999999999999999999999999999999998321 1223899
Q ss_pred EeEEeccCCCcceEEEEEEEC-----CeeEEEEecCEEEEcCCCCchHHHhccCC---CCCCCCCCceEEEeeCCCCCCC
Q 009486 375 NEVTIDRGISSYLTNLECYCD-----NSFVTCVQGDGLILSTTSGSTAYSLAAGG---SMVHPQVPGILFTPICPHSLSF 446 (533)
Q Consensus 375 NEVvI~rg~~s~mi~lev~Id-----g~~v~~~rgDGLIVSTPTGSTAYsLSAGG---PIv~P~v~aiviTPIcPhsLs~ 446 (533)
||++|.++.+++|++++++|| |.++.+|+|||||||||||||||+||||| ||++|++++|++||||||+ +.
T Consensus 162 NEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltPI~Ph~-~~ 240 (301)
T PLN02929 162 NDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGH-PP 240 (301)
T ss_pred eEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEeeCCCC-CC
Confidence 999999999999999999999 88999999999999999999999999999 8889999999999999999 99
Q ss_pred CCe---eeCCCCEEEEEeccCCCCCEEEEEcC-CcccccCCCCEEEEEecCCCeeEEE
Q 009486 447 RPL---ILPEHVTLRVQIPFNSRSPAWASFDG-KDRKQLAPGDALVCSMAPWPVPTAC 500 (533)
Q Consensus 447 RPl---Vlp~~~~I~I~v~~~~r~~a~vsiDG-~~~~~L~~Gd~I~I~~S~~~v~li~ 500 (533)
||+ |++++++|+|++. + ..+.+++|| +....|++||+|.|++++.+++++.
T Consensus 241 r~l~~~vv~~~~~i~i~~~--~-~~~~i~iDG~~~~~~l~~gd~i~I~~s~~~l~l~~ 295 (301)
T PLN02929 241 KSLMHGFYKPGQHMQVRWN--S-RKGTIYIDGSHVMHSIKLGDTIEISSDAPPLKVFL 295 (301)
T ss_pred CCccccEECCCCeEEEEEe--C-CCEEEEECCCcceEecCCCCEEEEEECCCeEEEEE
Confidence 999 9999999999873 2 358999999 5667899999999999999999874
No 25
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.84 E-value=8.1e-21 Score=193.25 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=151.2
Q ss_pred hhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC---CCCccCcc--CCcchHHHHHHHHHcCCceEEEEeeeeEE
Q 009486 281 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL---GSLGFMTP--FHSEHYKDYLDSVLRGPISITLRNRLQCH 355 (533)
Q Consensus 281 ~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~---G~LGFLt~--~~~ed~~~~L~~ll~G~y~ie~R~rL~v~ 355 (533)
.+....+|+||++|||||||.||+.+....+||+|||. |+=|.|+- -.+++..++|.++..|+|.+..|.|++.+
T Consensus 100 sq~i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~wv~r~rir~t 179 (395)
T KOG4180|consen 100 SQPIRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEWVLRQRIRGT 179 (395)
T ss_pred cCcCchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHHhhhheeEEE
Confidence 34467799999999999999999988888899999998 56665543 33578899999999999999999999999
Q ss_pred Eeeccccc-------------c------------------cccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEec
Q 009486 356 VIRDAAKN-------------E------------------IEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQG 404 (533)
Q Consensus 356 V~r~~~~~-------------~------------------~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rg 404 (533)
+..+++.. + .....++.|||||+|...-++++.+|++.||+.....+++
T Consensus 180 v~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~KqKs 259 (395)
T KOG4180|consen 180 VVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQKS 259 (395)
T ss_pred EecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccccC
Confidence 98644310 0 0012356799999999999999999999999999999999
Q ss_pred CEEEEcCCCCchHHHhccC--------CC---CCCCC------------------CCceEEEeeCCC-CCCCC-Ce---e
Q 009486 405 DGLILSTTSGSTAYSLAAG--------GS---MVHPQ------------------VPGILFTPICPH-SLSFR-PL---I 450 (533)
Q Consensus 405 DGLIVSTPTGSTAYsLSAG--------GP---Iv~P~------------------v~aiviTPIcPh-sLs~R-Pl---V 450 (533)
.|++|+|.||||+|+++.. +- +..-+ ...+++.|=-|. -.+.| || +
T Consensus 260 sgl~vctgTGstsw~~~iNria~q~v~d~l~~l~~~~~~~vp~~Re~ve~i~~~~nq~llF~PD~p~l~fSiRepi~n~~ 339 (395)
T KOG4180|consen 260 SGLVVCTGTGSTSWTFNINRIAEQAVGDLLMILLSRDNLQVPFMRELVEEISTAYNQHLLFKPDRPQLAFSIREPIFNAT 339 (395)
T ss_pred CCeeEecCCCcceEeecccHHHHHHHHHHHHHHHhcCcccchhhhhhhHHHHHHhhhcCccCCCCcchhhhhhhhhhccc
Confidence 9999999999999987652 20 00000 111122222221 12333 22 2
Q ss_pred eCCC----CEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCC
Q 009486 451 LPEH----VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPW 494 (533)
Q Consensus 451 lp~~----~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~ 494 (533)
.|.+ ..=+|.+...+ .++.+++||-..+++..|....+...+.
T Consensus 340 ~~s~~~R~f~~kI~iksrC-~da~lVidG~is~~fndga~a~mev~~e 386 (395)
T KOG4180|consen 340 WPSTDPRGFADKICIKSRC-QDAHLVIDGGISIPFNDGALAVMEVHPE 386 (395)
T ss_pred cCCCcccccceeEEEecce-eeeeEEEecceEeecCcchhheeeecch
Confidence 3332 22233342222 3578999998888999888777766554
No 26
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.24 E-value=2.1e-09 Score=108.85 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCEEEEEEcC--CChhHHHHHHHHHHHHHhcCCeEEEEccchhH-HhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 218 PQTVVILTKP--NSNSVQILCAQMVRWLREQKKLNIYVEPRVRA-ELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~--~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
|++++||.|| .+....+...++.++|.+ .++++.+...... ... .........++|+||++|
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~--------------~~~~~~~~~~~d~ivv~G 65 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAA--------------RYVEEARKFGVDTVIAGG 65 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHH--------------HHHHHHHhcCCCEEEEEC
Confidence 4789999999 555667778899999975 5666655322111 000 000011234689999999
Q ss_pred CchHHHHHHHhcCC-CCCcEEE-EeCCCCccCcc-CC-cchHHHHHHHHHcCCce
Q 009486 295 GDGTVLWAASIFKG-PVPPIVP-FSLGSLGFMTP-FH-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 295 GDGTlL~aar~~~~-~~~PILG-IN~G~LGFLt~-~~-~ed~~~~L~~ll~G~y~ 345 (533)
||||+..+++.+.. ...|.+| |+.|+.++|+. +. +.++.++++.+.+|+..
T Consensus 66 GDGTl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~~ 120 (293)
T TIGR00147 66 GDGTINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDAR 120 (293)
T ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCce
Confidence 99999999988765 3456677 99999999998 77 78899999999998754
No 27
>PRK13057 putative lipid kinase; Reviewed
Probab=98.52 E-value=1.6e-05 Score=80.81 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=74.1
Q ss_pred EEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHH
Q 009486 223 ILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWA 302 (533)
Q Consensus 223 IV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~a 302 (533)
||.||..-.......++.++|++ .++++.+.......-. .....+...++|+||++|||||+-.+
T Consensus 2 ~I~Np~sg~~~~~~~~i~~~l~~-~g~~~~~~~t~~~~~a--------------~~~~~~~~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 2 LLVNRHARSGRAALAAARAALEA-AGLELVEPPAEDPDDL--------------SEVIEAYADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred EEECCCCCCcchhHHHHHHHHHH-cCCeEEEEecCCHHHH--------------HHHHHHHHcCCCEEEEECchHHHHHH
Confidence 56777654434567889999975 5677554322111000 01111234568999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCccCcc-CC-cchHHHHHHHHHcCCce
Q 009486 303 ASIFKGPVPPIVPFSLGSLGFMTP-FH-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 303 ar~~~~~~~PILGIN~G~LGFLt~-~~-~ed~~~~L~~ll~G~y~ 345 (533)
+..+....+|+.-|.+|+-.-++. +. +.++.++++.+..|...
T Consensus 67 ~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~ 111 (287)
T PRK13057 67 APALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQVR 111 (287)
T ss_pred HHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCeE
Confidence 998888889999999998776655 22 56789999999988643
No 28
>PRK00861 putative lipid kinase; Reviewed
Probab=98.20 E-value=0.0014 Score=67.15 Aligned_cols=111 Identities=17% Similarity=0.305 Sum_probs=72.7
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEEccch--hHHhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 009486 218 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYVEPRV--RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 293 (533)
Q Consensus 218 pk~VlIV~K~~~~--~~~~~~~el~~~L~e~~gi~V~ve~~~--a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL 293 (533)
+++++||.||..- .......++...|.+...++++.-..- +.++ .......++|+||++
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~-----------------a~~~~~~~~d~vv~~ 64 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQL-----------------AQEAIERGAELIIAS 64 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHH-----------------HHHHHhcCCCEEEEE
Confidence 4689999998753 334456778888864223344432110 1110 001123567999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEeCCCCccCc-cCC-cchHHHHHHHHHcCCce
Q 009486 294 GGDGTVLWAASIFKGPVPPIVPFSLGSLGFMT-PFH-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 294 GGDGTlL~aar~~~~~~~PILGIN~G~LGFLt-~~~-~ed~~~~L~~ll~G~y~ 345 (533)
|||||+=.++..+.+..+|+.=|..|+-.-++ .+. +.++.++++.+.+|...
T Consensus 65 GGDGTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~ 118 (300)
T PRK00861 65 GGDGTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTR 118 (300)
T ss_pred CChHHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcE
Confidence 99999999999888778887778888754322 233 56788999999998753
No 29
>PRK12361 hypothetical protein; Provisional
Probab=98.14 E-value=0.001 Score=73.91 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=131.8
Q ss_pred CCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEEccc--hhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 009486 218 PQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYVEPR--VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 293 (533)
Q Consensus 218 pk~VlIV~K~~~--~~~~~~~~el~~~L~e~~gi~V~ve~~--~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL 293 (533)
++++.||.||.. -.......++.+.|.+...++++.-.. -+..+. . .....++|+||++
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la---------------~--~~~~~~~d~Viv~ 304 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALA---------------K--QARKAGADIVIAC 304 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHH---------------H--HHHhcCCCEEEEE
Confidence 467899999874 335567788888886532233332111 000000 0 0113467999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEeCCCCccCcc-C---Cc--chHHHHHHHHHcCCceEEEEeeeeEEEeeccccccccc
Q 009486 294 GGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTP-F---HS--EHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEI 367 (533)
Q Consensus 294 GGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~-~---~~--ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~ 367 (533)
|||||+=.++..+.+.++|+-=|.+|+-.-++- + .. .+..++++.+.+|...--....+.
T Consensus 305 GGDGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn-------------- 370 (547)
T PRK12361 305 GGDGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCN-------------- 370 (547)
T ss_pred CCCcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEc--------------
Confidence 999999999998887788877788887653332 2 21 478889999998875322221110
Q ss_pred ccceeeEEeEEecc----------------CCC------------cceEEEEEEECCeeEEEEecCEEEEcCCCCchHH-
Q 009486 368 EDPILVLNEVTIDR----------------GIS------------SYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAY- 418 (533)
Q Consensus 368 ~~~~~ALNEVvI~r----------------g~~------------s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAY- 418 (533)
..+.+|=+.+.- |.. .+-..+.+.+||+.....+.--++|+- |+.-+
T Consensus 371 --~~~fln~agiG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~~~~~~~~~~l~v~N--~~~~~~ 446 (547)
T PRK12361 371 --DRLMLLLVGIGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDAEPQTISTHSLVVAN--AAPFTS 446 (547)
T ss_pred --CeEEEEEEeechhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCCCceEEEEEEEEEEc--CCCccc
Confidence 112333332210 000 122457788898765555666666654 21111
Q ss_pred HhccCCCCCCCC---CCceEEEeeCCC---CCC-------------CCC-eeeCCCCEEEEEeccCCCCCEEEEEcCCcc
Q 009486 419 SLAAGGSMVHPQ---VPGILFTPICPH---SLS-------------FRP-LILPEHVTLRVQIPFNSRSPAWASFDGKDR 478 (533)
Q Consensus 419 sLSAGGPIv~P~---v~aiviTPIcPh---sLs-------------~RP-lVlp~~~~I~I~v~~~~r~~a~vsiDG~~~ 478 (533)
.+.-||+.-.|+ ++.+++.|..+. .+. ..| +..-...+++|+. ..+..+.+||...
T Consensus 447 ~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~----~~~~~~~iDGE~~ 522 (547)
T PRK12361 447 LLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISS----QKPIKYVIDGELF 522 (547)
T ss_pred ccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEe----CCceEEEECCccC
Confidence 123355543343 344444443220 010 011 1111223445543 2346788999875
Q ss_pred cccCCCCEEEEEecCCCeeEEE
Q 009486 479 KQLAPGDALVCSMAPWPVPTAC 500 (533)
Q Consensus 479 ~~L~~Gd~I~I~~S~~~v~li~ 500 (533)
. ...++|+..+..++++.
T Consensus 523 ~----~~p~~i~v~p~al~vlv 540 (547)
T PRK12361 523 E----DEDLTIEVQPASLKVFV 540 (547)
T ss_pred C----ceEEEEEEecCceEEEe
Confidence 3 36799999999999864
No 30
>PRK13059 putative lipid kinase; Reviewed
Probab=98.04 E-value=0.0013 Score=67.44 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEEc-cchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 218 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYVE-PRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~~~~--~~~~~~~el~~~L~e~~gi~V~ve-~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
|+++.||.||..- ...+...++.++|.+ .++++.+. ....... ..........+|.||++|
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~d~vi~~G 64 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDL---------------KNAFKDIDESYKYILIAG 64 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchH---------------HHHHHHhhcCCCEEEEEC
Confidence 4689999998643 334566788888875 56664431 1111000 011112235679999999
Q ss_pred CchHHHHHHHhcC--CCCCcEEEEeCCCCccCcc-CC-cchHHHHHHHHHcCCce
Q 009486 295 GDGTVLWAASIFK--GPVPPIVPFSLGSLGFMTP-FH-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 295 GDGTlL~aar~~~--~~~~PILGIN~G~LGFLt~-~~-~ed~~~~L~~ll~G~y~ 345 (533)
||||+=.++..+. +..+|+-=|..|+-.-++- +. +.+..++++.+..|...
T Consensus 65 GDGTv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~ 119 (295)
T PRK13059 65 GDGTVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPK 119 (295)
T ss_pred CccHHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcE
Confidence 9999988888776 3457766677886443332 23 56788999999988753
No 31
>PRK13337 putative lipid kinase; Reviewed
Probab=98.01 E-value=0.00095 Score=68.61 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEEccch-hHHhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 009486 218 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYVEPRV-RAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 293 (533)
Q Consensus 218 pk~VlIV~K~~~~--~~~~~~~el~~~L~e~~gi~V~ve~~~-a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvL 293 (533)
|++++||.+|..- .......++.+.|.+ .++++-+-... ..+. ..-..+ ....+|+||++
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a---------------~~~a~~~~~~~~d~vvv~ 64 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDA---------------TLAAERAVERKFDLVIAA 64 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCH---------------HHHHHHHHhcCCCEEEEE
Confidence 4689999998754 334556788888866 46554321110 0000 000011 12457999999
Q ss_pred eCchHHHHHHHhcCC--CCCcEEEEeCCCCccCcc-CC-cchHHHHHHHHHcCCc
Q 009486 294 GGDGTVLWAASIFKG--PVPPIVPFSLGSLGFMTP-FH-SEHYKDYLDSVLRGPI 344 (533)
Q Consensus 294 GGDGTlL~aar~~~~--~~~PILGIN~G~LGFLt~-~~-~ed~~~~L~~ll~G~y 344 (533)
|||||+=.++..+.. ..+|+.=|..|+-.-++- +. +.++.++++.+.+|..
T Consensus 65 GGDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~ 119 (304)
T PRK13337 65 GGDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHT 119 (304)
T ss_pred cCCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCe
Confidence 999999888876653 345666677787553332 22 5678889999988875
No 32
>PRK13055 putative lipid kinase; Reviewed
Probab=97.96 E-value=0.0013 Score=68.76 Aligned_cols=110 Identities=13% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeE--EEEcc-c--hhHHhhhcCCcccccccccchHHHhhhCCCccEE
Q 009486 218 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLN--IYVEP-R--VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLV 290 (533)
Q Consensus 218 pk~VlIV~K~~~~--~~~~~~~el~~~L~e~~gi~--V~ve~-~--~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlV 290 (533)
+++++||.||..- .......++.+.|.+ .+++ ++... . .+..+.. . ....++|+|
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~--~~~~~~d~v 63 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------R--AAEAGFDLI 63 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------H--HhhcCCCEE
Confidence 4789999998753 345667888888876 4555 33221 1 1111110 0 112457999
Q ss_pred EEEeCchHHHHHHHhcCC--CCCcEEEEeCCCCccCcc-CC-cc-hHHHHHHHHHcCCce
Q 009486 291 VTLGGDGTVLWAASIFKG--PVPPIVPFSLGSLGFMTP-FH-SE-HYKDYLDSVLRGPIS 345 (533)
Q Consensus 291 IvLGGDGTlL~aar~~~~--~~~PILGIN~G~LGFLt~-~~-~e-d~~~~L~~ll~G~y~ 345 (533)
|++|||||+=.++..+.+ ..+|+-=|..|+-.-++- +. +. +..++++.+++|...
T Consensus 64 vv~GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~ 123 (334)
T PRK13055 64 IAAGGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTI 123 (334)
T ss_pred EEECCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcE
Confidence 999999999998887764 345555577886443222 22 34 688889999988654
No 33
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.84 E-value=0.00012 Score=76.99 Aligned_cols=69 Identities=26% Similarity=0.391 Sum_probs=60.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCc--cCCcchHHHHHHHHHcCCceEEEEeeeeE
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMT--PFHSEHYKDYLDSVLRGPISITLRNRLQC 354 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt--~~~~ed~~~~L~~ll~G~y~ie~R~rL~v 354 (533)
..+|+++.+|||||.-.++... +..+|||||..|.--|.. .++|+.....+..+++|++.+++|...+.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r~~~r~V~di 169 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNARLENREVVDI 169 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhcccccccccccccc
Confidence 3799999999999999999887 678999999999766664 67899999999999999999998877654
No 34
>PRK11914 diacylglycerol kinase; Reviewed
Probab=97.82 E-value=0.00039 Score=71.32 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=76.4
Q ss_pred CCCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEE--ccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE
Q 009486 217 PPQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYV--EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~--~~~~~~~~el~~~L~e~~gi~V~v--e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv 292 (533)
.|++++||.||.. -...+.+.++.+.|++ .++++.+ ... ..+.. .........++|+||+
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~-~~~~~--------------~~a~~~~~~~~d~vvv 70 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTD-AHDAR--------------HLVAAALAKGTDALVV 70 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCC-HHHHH--------------HHHHHHHhcCCCEEEE
Confidence 4689999999875 4456778889999965 5665432 211 11100 0000112356799999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEeCCCCccCc-cCC-c-chHHHHHHHHHcCCce
Q 009486 293 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMT-PFH-S-EHYKDYLDSVLRGPIS 345 (533)
Q Consensus 293 LGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt-~~~-~-ed~~~~L~~ll~G~y~ 345 (533)
+|||||+=.++..+.+..+|+-=|..|+-.=++ .+. + ++.+++++.+.+|...
T Consensus 71 ~GGDGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~~ 126 (306)
T PRK11914 71 VGGDGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTE 126 (306)
T ss_pred ECCchHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCce
Confidence 999999999998888888887778888755333 333 3 4788899999998764
No 35
>PRK13054 lipid kinase; Reviewed
Probab=97.34 E-value=0.0022 Score=65.75 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccch----hHHhhhcCCcccccccccchHHHhhhCCCccEEEE
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRV----RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~----a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv 292 (533)
+|++++||.|+... ......++.++|.+ .++++-+.... +.++. . .....++|.||+
T Consensus 2 ~~~~~~~i~N~~~~-~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~--~~~~~~~d~vvv 62 (300)
T PRK13054 2 TFPKSLLILNGKSA-GNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------E--EALALGVATVIA 62 (300)
T ss_pred CCceEEEEECCCcc-chHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------H--HHHHcCCCEEEE
Confidence 47889999997754 34566778888865 56664432111 11110 0 112346899999
Q ss_pred EeCchHHHHHHHhcCC----CCCcEEEEeCCCCccCc-cCC-cchHHHHHHHHHcCCce
Q 009486 293 LGGDGTVLWAASIFKG----PVPPIVPFSLGSLGFMT-PFH-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 293 LGGDGTlL~aar~~~~----~~~PILGIN~G~LGFLt-~~~-~ed~~~~L~~ll~G~y~ 345 (533)
+|||||+=.++..+.+ ..+|+.=|..|+-.-++ .+. +.++.++++.+.+|...
T Consensus 63 ~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~ 121 (300)
T PRK13054 63 GGGDGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQ 121 (300)
T ss_pred ECCccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCce
Confidence 9999999998887653 23566667788644222 222 45788899999888653
No 36
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=97.29 E-value=0.048 Score=56.69 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEE---ccc-hhHHhhhcCCcccccccccchHHHhhhCCCccEEE
Q 009486 218 PQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYV---EPR-VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVV 291 (533)
Q Consensus 218 pk~VlIV~K~~~--~~~~~~~~el~~~L~e~~gi~V~v---e~~-~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVI 291 (533)
++++.+|++|.. ........++.+.|.++ +.++.+ +.. -+.++. + ......+|.||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~~t~~~g~a~~~a---------------~--~a~~~~~D~vi 63 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVRVTEEAGDAIEIA---------------R--EAAVEGYDTVI 63 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEEEeecCccHHHHH---------------H--HHHhcCCCEEE
Confidence 578899998854 46788889999999764 433322 111 111100 0 11123699999
Q ss_pred EEeCchHHHHHHHhcCCCCCcEEE-EeCCCCccCcc---CCcchHHHHHHHHHcCCce
Q 009486 292 TLGGDGTVLWAASIFKGPVPPIVP-FSLGSLGFMTP---FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 292 vLGGDGTlL~aar~~~~~~~PILG-IN~G~LGFLt~---~~~ed~~~~L~~ll~G~y~ 345 (533)
+.|||||+=.++--+...+.|.|| |.+|+-.=++- +..+++.++++.+.+|+-.
T Consensus 64 a~GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~ 121 (301)
T COG1597 64 AAGGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGETR 121 (301)
T ss_pred EecCcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeE
Confidence 999999999999888877666344 45676443322 3334699999999998644
No 37
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=97.18 E-value=0.002 Score=58.02 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=51.0
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~-gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
+++||.+|..-......+++...|.... .++++.-.. ... . .. ...........|.||++|||||
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~-~~~-~---------~~---~~~~~~~~~~~~~ivv~GGDGT 66 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETES-AGH-A---------EA---LARILALDDYPDVIVVVGGDGT 66 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESS-TTH-H---------HH---HHHHHHHTTS-SEEEEEESHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEec-cch-H---------HH---HHHHHhhccCccEEEEEcCccH
Confidence 4688888865333322477888887642 233332211 000 0 00 0001122233499999999999
Q ss_pred HHHHHHhcCCCCC----cEEEEeCCCCc
Q 009486 299 VLWAASIFKGPVP----PIVPFSLGSLG 322 (533)
Q Consensus 299 lL~aar~~~~~~~----PILGIN~G~LG 322 (533)
+-.++..+..... |+.=|.+|+-.
T Consensus 67 l~~vv~~l~~~~~~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 67 LNEVVNGLMGSDREDKPPLGIIPAGTGN 94 (130)
T ss_dssp HHHHHHHHCTSTSSS--EEEEEE-SSS-
T ss_pred HHHHHHHHhhcCCCccceEEEecCCChh
Confidence 9999998887655 88888888744
No 38
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=96.89 E-value=0.0076 Score=61.67 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=65.8
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccch----hHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRV----RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~----a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
++++|.|+... ......+++++|++ .++++-+.... +.++. .+ ....++|.||++||
T Consensus 1 ~~~~I~N~~~~-~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~--~~~~~~d~vv~~GG 61 (293)
T TIGR03702 1 KALLILNGKQA-DNEDVREAVGDLRD-EGIQLHVRVTWEKGDAQRYV---------------AE--ALALGVSTVIAGGG 61 (293)
T ss_pred CEEEEEeCCcc-chhHHHHHHHHHHH-CCCeEEEEEecCCCCHHHHH---------------HH--HHHcCCCEEEEEcC
Confidence 46788887654 33456678888865 56664332110 11110 01 11345799999999
Q ss_pred chHHHHHHHhcCC----CCCcEEEEeCCCCc-cCccCC-cchHHHHHHHHHcCCce
Q 009486 296 DGTVLWAASIFKG----PVPPIVPFSLGSLG-FMTPFH-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 296 DGTlL~aar~~~~----~~~PILGIN~G~LG-FLt~~~-~ed~~~~L~~ll~G~y~ 345 (533)
|||+=.++..+.. ..+|+.=|.+|+-. |--.+. +.+..++++.++.|...
T Consensus 62 DGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~~ 117 (293)
T TIGR03702 62 DGTLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGAAQ 117 (293)
T ss_pred ChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCce
Confidence 9998888877652 23456557788644 322333 56788899999988653
No 39
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=96.77 E-value=0.016 Score=63.97 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=71.9
Q ss_pred eeecCCCCEEEEEEcCC--ChhHHHHHH-HHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCcc
Q 009486 212 LKWESPPQTVVILTKPN--SNSVQILCA-QMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVD 288 (533)
Q Consensus 212 l~w~~~pk~VlIV~K~~--~~~~~~~~~-el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~D 288 (533)
+++...|++++||.||. +-.+..... ++...|++ .++++.+-......- .... .... ...++|
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~gh-----A~~l------a~~~--~~~~~D 170 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLH-----AKEV------VRTM--DLSKYD 170 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccH-----HHHH------HHHh--hhcCCC
Confidence 34556799999999985 344445444 46668865 566644322111000 0000 0011 134689
Q ss_pred EEEEEeCchHHHHHHHhcCCC-------CCcEEEEeCCCCc-cCccC----C-cchHHHHHHHHHcCCce
Q 009486 289 LVVTLGGDGTVLWAASIFKGP-------VPPIVPFSLGSLG-FMTPF----H-SEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 289 lVIvLGGDGTlL~aar~~~~~-------~~PILGIN~G~LG-FLt~~----~-~ed~~~~L~~ll~G~y~ 345 (533)
.||++||||||=.++.-+... .+|+-=|..|+-. |-..+ . +.+..+++..|+.|...
T Consensus 171 ~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~ 240 (481)
T PLN02958 171 GIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKC 240 (481)
T ss_pred EEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCce
Confidence 999999999988888766532 4676667778533 32222 2 55778888889998764
No 40
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=96.23 E-value=0.02 Score=51.70 Aligned_cols=36 Identities=39% Similarity=0.727 Sum_probs=29.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCC-----CcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPV-----PPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~-----~PILGIN~G~ 320 (533)
...|.||++|||||+=.++..+.... +|+.=|.+|+
T Consensus 48 ~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 48 PKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CcCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 35789999999999999998776443 7787788885
No 41
>PLN02204 diacylglycerol kinase
Probab=95.33 E-value=0.19 Score=57.06 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCCCEEEEEEcCC--ChhHHHHHHHHHHHHHhcCCeE--EEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEE
Q 009486 216 SPPQTVVILTKPN--SNSVQILCAQMVRWLREQKKLN--IYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLV 290 (533)
Q Consensus 216 ~~pk~VlIV~K~~--~~~~~~~~~el~~~L~e~~gi~--V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlV 290 (533)
..|++++||.+|. +-.......++...|.. .+++ |++-..... .++.. ..+.+ ....+|.|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~agh-------A~d~~------~~~~~~~l~~~D~V 222 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAGH-------AFDVM------ASISNKELKSYDGV 222 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcch-------HHHHH------HHHhhhhccCCCEE
Confidence 5588999999984 44455667788888865 4555 333221100 00000 01111 14568999
Q ss_pred EEEeCchHHHHHHHhc
Q 009486 291 VTLGGDGTVLWAASIF 306 (533)
Q Consensus 291 IvLGGDGTlL~aar~~ 306 (533)
|++||||||=.++.-+
T Consensus 223 VaVGGDGt~nEVlNGL 238 (601)
T PLN02204 223 IAVGGDGFFNEILNGY 238 (601)
T ss_pred EEEcCccHHHHHHHHH
Confidence 9999999976666533
No 42
>PLN02884 6-phosphofructokinase
Probab=93.72 E-value=0.51 Score=51.49 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=82.1
Q ss_pred ccCcceEEeeecCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCe-EEEEccchhHHhhhcCC-cc------------
Q 009486 204 ERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKL-NIYVEPRVRAELLTESS-YF------------ 268 (533)
Q Consensus 204 ~~~~~~~~l~w~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi-~V~ve~~~a~~l~~~~~-~~------------ 268 (533)
+|+...-.+-|+.+..+|+|++-- +.|-.-...+.+++.+.. .++ +||--.+=...+..... ..
T Consensus 39 ~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~ 117 (411)
T PLN02884 39 HRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHL 117 (411)
T ss_pred hhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHh
Confidence 566666678899999999999875 567777778888888754 477 67632222222221110 00
Q ss_pred ---cccccc--c-chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C---CCccCc
Q 009486 269 ---SFVQTW--K-DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G---SLGFMT 325 (533)
Q Consensus 269 ---~~i~~~--~-~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G---~LGFLt 325 (533)
+.+.+. . ....+.+. ..++|.+|++|||||+-.|.++.. +..+||+||.- | ++||-|
T Consensus 118 ~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdT 197 (411)
T PLN02884 118 SGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDT 197 (411)
T ss_pred CCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHH
Confidence 011110 0 00111111 257999999999999988776543 34599999963 2 788877
Q ss_pred cCCcchHHHHHHHHH
Q 009486 326 PFHSEHYKDYLDSVL 340 (533)
Q Consensus 326 ~~~~ed~~~~L~~ll 340 (533)
..+ .+.++++++.
T Consensus 198 Av~--~~~~ai~~l~ 210 (411)
T PLN02884 198 AVE--EAQRAINSAY 210 (411)
T ss_pred HHH--HHHHHHHHHH
Confidence 643 4556666554
No 43
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=91.24 E-value=1.7 Score=48.12 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=83.0
Q ss_pred eeccCcceEEeeecCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCC-------------
Q 009486 202 TAERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESS------------- 266 (533)
Q Consensus 202 ~~~~~~~~~~l~w~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~------------- 266 (533)
..+|+...-.+-++....+|+||+-- ..|-.-...+.++..+... +..+||--..-...+...+.
T Consensus 71 ~~~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~ 150 (459)
T PTZ00286 71 RWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHR 150 (459)
T ss_pred hheecCCceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHh
Confidence 34677777788999999999999875 5566666778888888643 33466543332222221100
Q ss_pred -cccccccccchHHHhhh-----CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC----------CCCccCc
Q 009486 267 -YFSFVQTWKDEKEILLL-----HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMT 325 (533)
Q Consensus 267 -~~~~i~~~~~~~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~----------G~LGFLt 325 (533)
.=+.+.+.-.......+ ..++|.+++||||||+-.|.+... +..+||+||.- =++||-|
T Consensus 151 ~GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdT 230 (459)
T PTZ00286 151 LGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQT 230 (459)
T ss_pred CCCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchH
Confidence 00011111000011111 257999999999999988876554 35699999874 3889977
Q ss_pred cCCcchHHHHHHHHH
Q 009486 326 PFHSEHYKDYLDSVL 340 (533)
Q Consensus 326 ~~~~ed~~~~L~~ll 340 (533)
.++ ...++++.+.
T Consensus 231 Av~--~~~~aI~~~~ 243 (459)
T PTZ00286 231 AVE--EAQNAIRAAY 243 (459)
T ss_pred HHH--HHHHHHHHHH
Confidence 644 4455555553
No 44
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=91.14 E-value=0.29 Score=51.27 Aligned_cols=54 Identities=24% Similarity=0.460 Sum_probs=40.8
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
.++|.+|++|||||+-.+.++....++||+||.. | ++||-|..+ .+-++++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~--~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALN--TIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHH--HHHHHHHHHH
Confidence 4689999999999998887776546799999974 3 788877543 4455566664
No 45
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=91.02 E-value=1.6 Score=48.13 Aligned_cols=136 Identities=14% Similarity=0.177 Sum_probs=81.6
Q ss_pred eccCcceEEeeecCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCC-eEEEEccchhHHhhhc--CCcc----------
Q 009486 203 AERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTE--SSYF---------- 268 (533)
Q Consensus 203 ~~~~~~~~~l~w~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~g-i~V~ve~~~a~~l~~~--~~~~---------- 268 (533)
.+++...-.+-|+....+|+|++-- ..|-.-...+.++..+..+.+ .+||--.+=...+... ....
T Consensus 65 ~~~agpr~~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i 144 (443)
T PRK06830 65 FEKAGPREKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADI 144 (443)
T ss_pred hhhcCCcceeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhH
Confidence 3566666678888888999999875 556666677888888765434 6666543333333210 0000
Q ss_pred -----cccccccchHHHhhh-----CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC----------CCCcc
Q 009486 269 -----SFVQTWKDEKEILLL-----HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGF 323 (533)
Q Consensus 269 -----~~i~~~~~~~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~----------G~LGF 323 (533)
+.+.+.-......++ ..++|.++++|||||+-.|.+... +..+||+||.- =++||
T Consensus 145 ~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GF 224 (443)
T PRK06830 145 HEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGF 224 (443)
T ss_pred HhCCCccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCH
Confidence 011110000011111 257999999999999988876553 45689999874 27888
Q ss_pred CccCCcchHHHHHHHHH
Q 009486 324 MTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 324 Lt~~~~ed~~~~L~~ll 340 (533)
-|.++ .+.++++.+.
T Consensus 225 dTAv~--~a~~aI~~~~ 239 (443)
T PRK06830 225 ETAVE--KATEAIRCAH 239 (443)
T ss_pred HHHHH--HHHHHHHHHH
Confidence 77643 4445555543
No 46
>PRK14071 6-phosphofructokinase; Provisional
Probab=90.11 E-value=0.42 Score=51.20 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=41.1
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC----------CCCccCccCCcchHHHHHHHHHc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVLR 341 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~----------G~LGFLt~~~~ed~~~~L~~ll~ 341 (533)
.++|.+|++|||||+-.+.++....++||+||.- -++||-|..+. ..++++.+..
T Consensus 106 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 106 LGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred cCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 4789999999999987665554434899999864 28999887654 5567777654
No 47
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=89.38 E-value=1.6 Score=47.54 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=46.5
Q ss_pred hCCCccEEEEEeCchHHHHHHHhcC---CCCCcEEEEeCCCC--c---cCcc-CC-cch---HHHHHHHHHcCCceEEEE
Q 009486 283 LHTKVDLVVTLGGDGTVLWAASIFK---GPVPPIVPFSLGSL--G---FMTP-FH-SEH---YKDYLDSVLRGPISITLR 349 (533)
Q Consensus 283 ~~~~~DlVIvLGGDGTlL~aar~~~---~~~~PILGIN~G~L--G---FLt~-~~-~ed---~~~~L~~ll~G~y~ie~R 349 (533)
+....|.++|.|||||+=-++--+- +...||-=+..|+. + -|-. |+ .++ +-+++..+++++-.
T Consensus 113 ~~t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~k---- 188 (535)
T KOG4435|consen 113 VDTQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKK---- 188 (535)
T ss_pred hccCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccccc----
Confidence 3445699999999999877664332 23445533333432 1 1111 22 222 33567777777543
Q ss_pred eeeeEEEeecccccccccccceeeEEeEE
Q 009486 350 NRLQCHVIRDAAKNEIEIEDPILVLNEVT 378 (533)
Q Consensus 350 ~rL~v~V~r~~~~~~~~~~~~~~ALNEVv 378 (533)
+.+.-.|...+. ...+.++||++.
T Consensus 189 sv~~fdv~~~gs-----~l~P~fgl~gls 212 (535)
T KOG4435|consen 189 SVYAFDVTTEGS-----TLAPEFGLGGLS 212 (535)
T ss_pred ceEEEEeccCCC-----ccccccccCccc
Confidence 222223333322 346778999884
No 48
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=88.73 E-value=0.46 Score=50.19 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=40.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHHc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVLR 341 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll~ 341 (533)
.++|.+|++|||||+-.+.++.. ..+||+||.. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~-~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLAD-KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHh-cCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 46899999999999977666544 5699999874 3 6888876553 5566666654
No 49
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=88.37 E-value=1.5 Score=46.60 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=45.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-...-....+..++.+.|.+ .++++.+-..+.. ++..+.+. .-.... ..++|+||.+|| |
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 91 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP-----DPSVETVL-----KGAEAMREFEPDWIIALGG-G 91 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 789999855443444566788899965 5676654322111 11111110 001111 257899999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
.++-+++.+.
T Consensus 92 SviD~AK~ia 101 (375)
T cd08179 92 SPIDAAKAMW 101 (375)
T ss_pred cHHHHHHHHH
Confidence 9999998753
No 50
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=87.49 E-value=2.1 Score=45.53 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+.+.-. ......++.+.|.+ .++++.+-..+.. ++....+. .-.... ..++|+||.|||
T Consensus 23 ~~r~livt~~~~~-~~g~~~~v~~~L~~-~gi~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG- 89 (375)
T cd08194 23 GKRPLIVTDKVMV-KLGLVDKLTDSLKK-EGIESAIFDDVVS-----EPTDESVE-----EGVKLAKEGGCDVIIALGG- 89 (375)
T ss_pred CCeEEEEcCcchh-hcchHHHHHHHHHH-CCCeEEEECCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 3689999865432 12356788889965 4666654322111 11111111 001111 357899999999
Q ss_pred hHHHHHHHhcC-------------------CCCCcEEEEeC
Q 009486 297 GTVLWAASIFK-------------------GPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~-------------------~~~~PILGIN~ 318 (533)
|.++-+++.+. ...+|++.|.+
T Consensus 90 GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 90 GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 99999998763 34578988886
No 51
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=87.16 E-value=2 Score=42.51 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=49.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+++-+.+ .....+.+||.+ .|+.+.+-+..... .....+...++|.+|..||.|..
T Consensus 2 ~ilv~d~~~-----~~~~~~~~~l~~-~G~~~~~~~~~~~~----------------~~~~~~~~~~~dgliisGGp~~~ 59 (214)
T PRK07765 2 RILVVDNYD-----SFVFNLVQYLGQ-LGVEAEVWRNDDPR----------------LADEAAVAAQFDGVLLSPGPGTP 59 (214)
T ss_pred eEEEEECCC-----cHHHHHHHHHHH-cCCcEEEEECCCcC----------------HHHHHHhhcCCCEEEECCCCCCh
Confidence 577777654 224568889976 56666553321100 01112234569999999999765
Q ss_pred H------HHHHhcCCCCCcEEEEeCCC
Q 009486 300 L------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 300 L------~aar~~~~~~~PILGIN~G~ 320 (533)
- ...+.+....+|||||-+|.
T Consensus 60 ~~~~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 60 ERAGASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred hhcchHHHHHHHHHhCCCCEEEEccCH
Confidence 3 33444445679999999996
No 52
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=87.15 E-value=2.4 Score=44.91 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=51.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-+..-.......++.+.|.+ .++++.+-..+.. ++....+. .-... ...++|+||.||| |
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVEE-----NPSLETIM-----EAVEIAKKFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 789999876543333455778888865 4666543222111 01111010 00011 1357899999999 9
Q ss_pred HHHHHHHhcC------------------CCCCcEEEEeC
Q 009486 298 TVLWAASIFK------------------GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~------------------~~~~PILGIN~ 318 (533)
.++-+++.+. ...+|++.|.+
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 9999998542 23578888776
No 53
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=86.91 E-value=2 Score=45.82 Aligned_cols=87 Identities=17% Similarity=0.301 Sum_probs=51.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+.+.-.. .....++.+.|.+ .++++.+-..+.. ++....+. .-.... ..++|+||.||| |
T Consensus 29 ~~~lvv~~~~~~~-~~~~~~v~~~L~~-~~~~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK-IGVVEKVTDVLDE-AGIDYVIYDGVKP-----NPTITNVK-----DGLAVFKKEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh-cCcHHHHHHHHHH-cCCeEEEeCCCCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 6899998654322 2457789999975 5666554322111 01111010 001111 257899999999 9
Q ss_pred HHHHHHHhcC-------------------CCCCcEEEEeC
Q 009486 298 TVLWAASIFK-------------------GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~-------------------~~~~PILGIN~ 318 (533)
+++-+++.+. ...+|++.|.+
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 135 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINT 135 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCC
Confidence 9999998753 23568888776
No 54
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=86.87 E-value=1.9 Score=41.51 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=46.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch-
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG- 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG- 297 (533)
++|+||-+.+.- ...+.++|++ .|.++.+-..... + ..+ ...+|.||+.||-|
T Consensus 2 ~~iliid~~dsf-----~~~i~~~l~~-~g~~~~v~~~~~~-----------------~--~~~-l~~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDSF-----TFNLVDLIRK-LGVPMQVVNVEDL-----------------D--LDE-VENFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCch-----HHHHHHHHHH-cCCcEEEEECCcc-----------------C--hhH-hccCCEEEECCCCCC
Confidence 578888886654 2448888876 4665554321000 0 111 23589999999988
Q ss_pred --H---HHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 --T---VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 --T---lL~aar~~~~~~~PILGIN~G~ 320 (533)
. ++...+.+ ...+|||||-+|.
T Consensus 56 ~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 56 PRAYPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hHHhhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 2 23333433 3578999999996
No 55
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=86.60 E-value=3 Score=44.48 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=45.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-...-....+..++.+.|.+ .++++.+-..+.. ++....+... ..... ..++|+||.||| |.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~~-----~p~~~~v~~~--~~~~~--~~~~D~IiavGG-GS 94 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVEP-----NPTTTTVMEG--AALAR--EEGCDFVVGLGG-GS 94 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCccC-----CCCHHHHHHH--HHHHH--HcCCCEEEEeCC-cc
Confidence 689999975542334567889999965 5676654322211 1111111000 00111 257999999999 99
Q ss_pred HHHHHHhc
Q 009486 299 VLWAASIF 306 (533)
Q Consensus 299 lL~aar~~ 306 (533)
++-+++.+
T Consensus 95 ~iD~aK~i 102 (380)
T cd08185 95 SMDTAKAI 102 (380)
T ss_pred HHHHHHHH
Confidence 99998765
No 56
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=86.51 E-value=2 Score=45.83 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=52.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-+..-....+..++.+.|++ .++++.+-..+.. ++....+.. .... --..++|+||.+|| |+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~~---~~~~-~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVEP-----NPRLETVRE---GIEL-CKEEKVDFILAVGG-GS 97 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCccC-----CCCHHHHHH---HHHH-HHHcCCCEEEEeCC-hH
Confidence 789999865433333456778888865 5676654322111 010000000 0000 01357899999999 99
Q ss_pred HHHHHHhcCC-------------------CCCcEEEEeC
Q 009486 299 VLWAASIFKG-------------------PVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~-------------------~~~PILGIN~ 318 (533)
++-+++.+.- ..+|++.|.+
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 9999986532 3578888886
No 57
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=86.40 E-value=1.7 Score=41.44 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH-----HHHHhcCCCC
Q 009486 236 CAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL-----WAASIFKGPV 310 (533)
Q Consensus 236 ~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL-----~aar~~~~~~ 310 (533)
...+.++|++ .|+++.+-+.... .....+ ...+|.||+.||.|+.. ...+......
T Consensus 11 ~~~~~~~l~~-~G~~~~~~~~~~~-----------------~~~~~~-~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~ 71 (184)
T cd01743 11 TYNLVQYLRE-LGAEVVVVRNDEI-----------------TLEELE-LLNPDAIVISPGPGHPEDAGISLEIIRALAGK 71 (184)
T ss_pred HHHHHHHHHH-cCCceEEEeCCCC-----------------CHHHHh-hcCCCEEEECCCCCCcccchhHHHHHHHHhcC
Confidence 4567888876 5777665432110 111112 25699999999999843 2222222356
Q ss_pred CcEEEEeCCC
Q 009486 311 PPIVPFSLGS 320 (533)
Q Consensus 311 ~PILGIN~G~ 320 (533)
+|||||-+|.
T Consensus 72 ~PvlGIC~G~ 81 (184)
T cd01743 72 VPILGVCLGH 81 (184)
T ss_pred CCEEEECHhH
Confidence 8999999986
No 58
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=86.18 E-value=2 Score=45.93 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++||+-+..........++...|.+ .++++.+-..+. .++..+.+... ..... ..++|+||.+|| |
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~-----~~p~~~~v~~~--~~~~~--~~~~D~IIaiGG-G 94 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT-----PNPTVDQVDEA--AKLGR--EFGAQAVIAIGG-G 94 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC-----CCCCHHHHHHH--HHHHH--HcCCCEEEEeCC-c
Confidence 4789999865544444456788888865 566665432221 11111111100 00111 246899999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
+++-+++.+.
T Consensus 95 S~iD~aK~ia 104 (383)
T cd08186 95 SPIDSAKSAA 104 (383)
T ss_pred cHHHHHHHHH
Confidence 9999988763
No 59
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=86.15 E-value=0.63 Score=50.67 Aligned_cols=71 Identities=28% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHHcCCceEEEE
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVLRGPISITLR 349 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R 349 (533)
.++|.+|++|||||+-.|.++.. +.++||+||.- | ++||-|..+ .+-++++++..-- .-..|
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~~ta-~s~~r 187 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVINEH-SANPR 187 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHHHHH-HhcCC
Confidence 47899999999999988877653 45799999863 2 788877543 4455666665421 12224
Q ss_pred eeeeEEEee
Q 009486 350 NRLQCHVIR 358 (533)
Q Consensus 350 ~rL~v~V~r 358 (533)
.++-++++.
T Consensus 188 ~~~vvEvMG 196 (403)
T PRK06555 188 MLIIHEVMG 196 (403)
T ss_pred EEEEEEccC
Confidence 444345553
No 60
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=86.08 E-value=3 Score=44.16 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=52.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+-+.... .....++.+.|.+ .++++.+-..+.. ++....+. .-.... ..++|+||.+||
T Consensus 23 ~~~~lvv~~~~~~~-~~~~~~v~~~L~~-~~~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IiaiGG- 89 (370)
T cd08551 23 GRKALIVTDPGLVK-TGVLDKVIDSLKE-AGIEVVIFDGVEP-----NPTLSNVD-----AAVAAYREEGCDGVIAVGG- 89 (370)
T ss_pred CCeEEEEeCcchhh-CccHHHHHHHHHH-cCCeEEEECCCCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 36899998655433 3566788888865 5666553221111 01111111 001111 257899999999
Q ss_pred hHHHHHHHhcCC-------------------CCCcEEEEeC
Q 009486 297 GTVLWAASIFKG-------------------PVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~~-------------------~~~PILGIN~ 318 (533)
|+++-+++.+.- ..+|++.|.+
T Consensus 90 Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT 130 (370)
T cd08551 90 GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPT 130 (370)
T ss_pred chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecC
Confidence 999999987641 1578888876
No 61
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=85.76 E-value=1.6 Score=46.21 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=45.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
.+++||+-+ .-....+..++.+.|++ .++++.+...+... +....+... ..... ..++|+||.||| |+
T Consensus 22 gr~lvVt~~-~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~~-----p~~~~v~~~--~~~~~--~~~~D~IIaiGG-GS 89 (366)
T PF00465_consen 22 GRVLVVTDP-SLSKSGLVDRVLDALEE-AGIEVQVFDGVGPN-----PTLEDVDEA--AEQAR--KFGADCIIAIGG-GS 89 (366)
T ss_dssp TEEEEEEEH-HHHHHTHHHHHHHHHHH-TTCEEEEEEEESSS------BHHHHHHH--HHHHH--HTTSSEEEEEES-HH
T ss_pred CCEEEEECc-hHHhCccHHHHHHHHhh-CceEEEEEecCCCC-----CcHHHHHHH--HHHHH--hcCCCEEEEcCC-CC
Confidence 389999966 22233367889999965 67777654432211 111111100 00111 247899999999 99
Q ss_pred HHHHHHhcC
Q 009486 299 VLWAASIFK 307 (533)
Q Consensus 299 lL~aar~~~ 307 (533)
.+.+++.+.
T Consensus 90 ~~D~aK~va 98 (366)
T PF00465_consen 90 VMDAAKAVA 98 (366)
T ss_dssp HHHHHHHHH
T ss_pred cCcHHHHHH
Confidence 999988654
No 62
>PRK14072 6-phosphofructokinase; Provisional
Probab=85.19 E-value=0.72 Score=50.35 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=38.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC----------CCCccCccCCcchHHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSV 339 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~----------G~LGFLt~~~~ed~~~~L~~l 339 (533)
.++|.+|++|||||+-.|.++.. +..+||+||.- -++||-|..+ -+-++++++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 47899999999999988876543 45699999874 3788877543 344555555
No 63
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=85.02 E-value=2.7 Score=44.18 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=52.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-..-. .....++.+.|.+ .++++.+.. +.. ++..+.+. .-.... ..++|+||.+|| |
T Consensus 23 ~r~livt~~~~~--~~~~~~v~~~L~~-~~i~~~~~~-~~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 87 (351)
T cd08170 23 KRALIIADEFVL--DLVGAKIEESLAA-AGIDARFEV-FGG-----ECTRAEIE-----RLAEIARDNGADVVIGIGG-G 87 (351)
T ss_pred CeEEEEECHHHH--HHHHHHHHHHHHh-CCCeEEEEE-eCC-----cCCHHHHH-----HHHHHHhhcCCCEEEEecC-c
Confidence 789999854332 2577888888865 566653321 110 01111110 001111 257899999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~ 318 (533)
.++-+++.+. ...+|++.|.+
T Consensus 88 S~iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 88 KTLDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hhhHHHHHHHHHcCCCEEEeCC
Confidence 9999999875 34689999986
No 64
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=84.55 E-value=0.88 Score=47.96 Aligned_cols=53 Identities=26% Similarity=0.450 Sum_probs=39.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
.++|.+|++|||||+-.+.++.. .++||+||.. | ++||-|..+ .+-+.++.+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~--~~~~~i~~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTE-HGFPCVGLPGTIDNDIPGTDYTIGFDTALN--TVVEAIDRIR 153 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHH-cCCCEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHHH
Confidence 57899999999999988776554 4799999874 3 789977644 3444555554
No 65
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=84.51 E-value=4.5 Score=42.49 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=50.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-..-.. .+..++...|.++..+.+++.++- ....+... ..... ..++|+||.+|| |+
T Consensus 26 ~~~liv~d~~~~~--~~~~~v~~~l~~~~~~~~~~~~~~---------~~~~v~~~--~~~~~--~~~~d~iIaiGG-Gs 89 (339)
T cd08173 26 GRVLVVTGPTTKS--IAGKKVEALLEDEGEVDVVIVEDA---------TYEEVEKV--ESSAR--DIGADFVIGVGG-GR 89 (339)
T ss_pred CeEEEEECCchHH--HHHHHHHHHHHhcCCeEEEEeCCC---------CHHHHHHH--HHHhh--hcCCCEEEEeCC-ch
Confidence 6789998654332 466778888865332333433211 00001000 00111 146899999999 99
Q ss_pred HHHHHHhcC-CCCCcEEEEeC
Q 009486 299 VLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~-~~~~PILGIN~ 318 (533)
++-+++.+. ...+|++-|.+
T Consensus 90 ~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 90 VIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHHhcCCCEEEecC
Confidence 999999875 34689988886
No 66
>PRK06186 hypothetical protein; Validated
Probab=84.48 E-value=2.6 Score=42.75 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=30.6
Q ss_pred CCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
..++|-|++.||=|. .+.++++....++|+|||-+|-
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGm 92 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhh
Confidence 457899999999664 5777888888899999999883
No 67
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=84.13 E-value=3.9 Score=43.55 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=51.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+-..-. ......++...|.+ .++++.+-..+.. ++....+. .-.... ..++|+||.|||
T Consensus 26 ~~~~livt~~~~~-~~~~~~~v~~~L~~-~~~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG- 92 (376)
T cd08193 26 AKRVLVVTDPGIL-KAGLIDPLLASLEA-AGIEVTVFDDVEA-----DPPEAVVE-----AAVEAARAAGADGVIGFGG- 92 (376)
T ss_pred CCeEEEEcCcchh-hCccHHHHHHHHHH-cCCeEEEECCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 3789999865321 22356788888865 5666654222111 11111111 001111 257899999999
Q ss_pred hHHHHHHHhcC-------------------CCCCcEEEEeC
Q 009486 297 GTVLWAASIFK-------------------GPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~-------------------~~~~PILGIN~ 318 (533)
|.++-+++.+. ...+|++.|.+
T Consensus 93 Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 93 GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 99999998763 13568888776
No 68
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=83.89 E-value=3.5 Score=43.36 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-+.-... ...++.+.|.+ .++++.+...... ...+....+. .-......++|+||.||| |.
T Consensus 24 ~~~livtd~~~~~~--~~~~v~~~l~~-~~i~~~~~~~~~~---~~~pt~~~v~-----~~~~~~~~~~d~IIaIGG-Gs 91 (348)
T cd08175 24 KKALIVADENTYAA--AGKKVEALLKR-AGVVVLLIVLPAG---DLIADEKAVG-----RVLKELERDTDLIIAVGS-GT 91 (348)
T ss_pred CcEEEEECCcHHHH--HHHHHHHHHHH-CCCeeEEeecCCC---cccCCHHHHH-----HHHHHhhccCCEEEEECC-cH
Confidence 67899985543332 25788888865 5665432111000 0001111010 111122227999999999 99
Q ss_pred HHHHHHhcC-CCCCcEEEEeC
Q 009486 299 VLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~-~~~~PILGIN~ 318 (533)
++-+++.+. ...+|++-|.+
T Consensus 92 ~~D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 92 INDITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHHHhcCCCEEEecC
Confidence 999999875 35689999886
No 69
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=83.85 E-value=3.6 Score=43.32 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=56.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-.... .....++.+.|.+ .++++.+-..+.. ++....+. .-... -..++|+||.+|| |
T Consensus 23 ~r~liv~d~~~~--~~~~~~v~~~l~~-~~~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL--AAAKDKIKAALEQ-SGIEITDFIWYGG-----ESTYENVE-----RLKKNPAVQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH--HHHHHHHHHHHHH-CCCeEEEEEecCC-----CCCHHHHH-----HHHHHHhhcCCCEEEEeCC-c
Confidence 789999864322 3346778888865 4666542111110 01111010 00011 1357899999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeC--CCCccCccCC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSL--GSLGFMTPFH 328 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~--G~LGFLt~~~ 328 (533)
+++-+++.+. ...+|++-|.+ |+=+..+.+.
T Consensus 89 s~~D~aK~ia~~~~~p~i~VPTt~gtgse~t~~a 122 (345)
T cd08171 89 KAIDTVKVLADKLGKPVFTFPTIASNCAAVTAVS 122 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEecCccccCccccceE
Confidence 9999999875 34689999987 5655555544
No 70
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=83.62 E-value=3.1 Score=40.03 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=47.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH-
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV- 299 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl- 299 (533)
|+||-+.+. .+..|+++|++ .+.+|.+-+.... ..+++. ..++|.||..||.|..
T Consensus 2 il~id~~ds-----f~~nl~~~l~~-~~~~~~v~~~~~~----------------~~~~~~--~~~~~~iilsgGP~~~~ 57 (191)
T PRK06774 2 LLLIDNYDS-----FTYNLYQYFCE-LGTEVMVKRNDEL----------------QLTDIE--QLAPSHLVISPGPCTPN 57 (191)
T ss_pred EEEEECCCc-----hHHHHHHHHHH-CCCcEEEEeCCCC----------------CHHHHH--hcCCCeEEEcCCCCChH
Confidence 666766553 35788999976 5677665432100 011121 1368999999999984
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 009486 300 -----LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 300 -----L~aar~~~~~~~PILGIN~G~ 320 (533)
+...+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 58 EAGISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred hCCCchHHHHHh-cCCCCEEEECHHH
Confidence 3344444 3479999999986
No 71
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=83.20 E-value=4.2 Score=43.63 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=44.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-+.-. ...++.++.+.|++ .++.+.+-..+.. ++..+.+.. ..+.- -..++|+||.+|| |.
T Consensus 32 ~~~livt~~~~~-~~g~~~~v~~~L~~-~~i~~~~f~~v~~-----np~~~~v~~---~~~~~-~~~~~D~IiaiGG-GS 99 (383)
T PRK09860 32 TRTLIVTDNMLT-KLGMAGDVQKALEE-RNIFSVIYDGTQP-----NPTTENVAA---GLKLL-KENNCDSVISLGG-GS 99 (383)
T ss_pred CEEEEEcCcchh-hCccHHHHHHHHHH-cCCeEEEeCCCCC-----CcCHHHHHH---HHHHH-HHcCCCEEEEeCC-ch
Confidence 689999864322 23456788888965 5676544322211 011111100 00000 1357999999999 99
Q ss_pred HHHHHHhcC
Q 009486 299 VLWAASIFK 307 (533)
Q Consensus 299 lL~aar~~~ 307 (533)
.+-+++.+.
T Consensus 100 ~iD~AK~ia 108 (383)
T PRK09860 100 PHDCAKGIA 108 (383)
T ss_pred HHHHHHHHH
Confidence 999998764
No 72
>CHL00101 trpG anthranilate synthase component 2
Probab=82.91 E-value=3.8 Score=39.51 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=45.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 300 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 300 (533)
|+||-+.+.- +..|+++|++ .|+++.+-+.... +..++. ...+|.||+.||.|..-
T Consensus 2 iliid~~dsf-----t~~l~~~l~~-~g~~~~v~~~~~~----------------~~~~~~--~~~~dgiiisgGpg~~~ 57 (190)
T CHL00101 2 ILIIDNYDSF-----TYNLVQSLGE-LNSDVLVCRNDEI----------------DLSKIK--NLNIRHIIISPGPGHPR 57 (190)
T ss_pred EEEEECCCch-----HHHHHHHHHh-cCCCEEEEECCCC----------------CHHHHh--hCCCCEEEECCCCCChH
Confidence 5666654432 4568888876 5676665332100 001111 23589999999999863
Q ss_pred H------HHHhcCCCCCcEEEEeCCC
Q 009486 301 W------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 301 ~------aar~~~~~~~PILGIN~G~ 320 (533)
. ..+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~i~~~~-~~~~PiLGIClG~ 82 (190)
T CHL00101 58 DSGISLDVISSY-APYIPILGVCLGH 82 (190)
T ss_pred HCcchHHHHHHh-cCCCcEEEEchhH
Confidence 3 22223 3578999999996
No 73
>PRK05670 anthranilate synthase component II; Provisional
Probab=82.85 E-value=4.2 Score=39.05 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=45.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 300 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 300 (533)
|+||-..+ +.+..+.+||.+ .|+++.+-+.... ....+.. .++|.||..||-|+.-
T Consensus 2 iliid~~d-----~f~~~i~~~l~~-~g~~~~v~~~~~~----------------~~~~~~~--~~~dglIlsgGpg~~~ 57 (189)
T PRK05670 2 ILLIDNYD-----SFTYNLVQYLGE-LGAEVVVYRNDEI----------------TLEEIEA--LNPDAIVLSPGPGTPA 57 (189)
T ss_pred EEEEECCC-----chHHHHHHHHHH-CCCcEEEEECCCC----------------CHHHHHh--CCCCEEEEcCCCCChH
Confidence 56665543 235788999976 4777655432110 0111222 2389999999998862
Q ss_pred ------HHHHhcCCCCCcEEEEeCCC
Q 009486 301 ------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 301 ------~aar~~~~~~~PILGIN~G~ 320 (533)
...+.+. ..+|||||-+|.
T Consensus 58 d~~~~~~~l~~~~-~~~PvLGIClG~ 82 (189)
T PRK05670 58 EAGISLELIREFA-GKVPILGVCLGH 82 (189)
T ss_pred HcchHHHHHHHhc-CCCCEEEECHHH
Confidence 2333332 468999999996
No 74
>PRK10586 putative oxidoreductase; Provisional
Probab=82.66 E-value=6.4 Score=42.10 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCccEEEEEeCchHHHHHHHhcCC-CCCcEEEEeC--CCCccCcc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKG-PVPPIVPFSL--GSLGFMTP 326 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~-~~~PILGIN~--G~LGFLt~ 326 (533)
.++|+||.+|| |..+.+++.+.. ..+|++.|.+ |+=+..+.
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeCCccccccccC
Confidence 46899999999 999999998753 5789999997 44333443
No 75
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=82.65 E-value=4.3 Score=39.13 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=47.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 300 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 300 (533)
|+||-+.+. ....++++|.+ .|.++.+.+..... .+.+.. .++|.||..||-|..-
T Consensus 2 il~id~~ds-----ft~~~~~~l~~-~g~~v~v~~~~~~~----------------~~~~~~--~~~d~iilsgGpg~p~ 57 (188)
T TIGR00566 2 VLMIDNYDS-----FTYNLVQYFCE-LGAEVVVKRNDSLT----------------LQEIEA--LLPLLIVISPGPCTPN 57 (188)
T ss_pred EEEEECCcC-----HHHHHHHHHHH-cCCceEEEECCCCC----------------HHHHHh--cCCCEEEEcCCCCChh
Confidence 667766554 35678889976 46776664421100 011212 2589999999998863
Q ss_pred H------HHHhcCCCCCcEEEEeCCC
Q 009486 301 W------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 301 ~------aar~~~~~~~PILGIN~G~ 320 (533)
. ..+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 58 EAGISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred hcchhHHHHHHh-ccCCCEEEECHHH
Confidence 3 44454 4578999999996
No 76
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=82.39 E-value=1.1 Score=48.01 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=72.3
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCccc---------------cc-----ccccc
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFS---------------FV-----QTWKD 276 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~---------------~i-----~~~~~ 276 (533)
+++|+|++-- +.|-.-...+-+++.+.. .+++||--.+-...+.... ..+ .+ ..+..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g~eV~Gi~~Gy~GL~~~~-i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-EGLEVFGIYNGYLGLLEGD-IKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-cCCEEEEEecchhhhcCCc-ceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 6788888875 556666667777877765 4788875433332222110 000 00 00111
Q ss_pred hHHHh-----hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC----------CCCccCccCCcchHHHHHHHHH
Q 009486 277 EKEIL-----LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 277 ~~~~~-----~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~----------G~LGFLt~~~~ed~~~~L~~ll 340 (533)
.+-.. ....++|.+|++|||||+-.|+.+.....+|++||.- =++||.|..+ -+-++++++.
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~--~~~eaid~l~ 156 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALE--TAVEAIDNLR 156 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHH--HHHHHHHHHH
Confidence 10000 1135789999999999999998887655599999863 2789988654 4556666665
No 77
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=82.20 E-value=3.2 Score=43.55 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=49.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-..-... ...++.+.|.+. ++.+|-+ +.. ++....+. .-.... ..++|+||.||| |
T Consensus 24 ~~~livt~~~~~~~--~~~~v~~~l~~~-~~~~~~~--~~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG-G 87 (337)
T cd08177 24 SRALVLTTPSLATK--LAERVASALGDR-VAGTFDG--AVM-----HTPVEVTE-----AAVAAAREAGADGIVAIGG-G 87 (337)
T ss_pred CeEEEEcChHHHHH--HHHHHHHHhccC-CcEEeCC--CCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 68999985443322 667788888643 4444321 100 00000000 001111 257899999999 9
Q ss_pred HHHHHHHhcCC-CCCcEEEEeC
Q 009486 298 TVLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~~-~~~PILGIN~ 318 (533)
+++-+++.+.- ..+|++.|.+
T Consensus 88 s~iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 88 STIDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEcC
Confidence 99999988752 3689988886
No 78
>PLN02564 6-phosphofructokinase
Probab=82.18 E-value=1.2 Score=49.75 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=81.1
Q ss_pred eeccCcceEEeeecCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCC-eEEEEccchhHHhhhcC--------------
Q 009486 202 TAERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTES-------------- 265 (533)
Q Consensus 202 ~~~~~~~~~~l~w~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~g-i~V~ve~~~a~~l~~~~-------------- 265 (533)
..+|+...-.+-|+....+|+|++-- ..|-.-...+.++..+....+ .+||--..-...+....
T Consensus 71 ~~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~ 150 (484)
T PLN02564 71 HFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHK 150 (484)
T ss_pred cceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhh
Confidence 44677777778899999999999874 567777777778777753323 56654332222221100
Q ss_pred Cccccccccc---chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC----------CCCccCc
Q 009486 266 SYFSFVQTWK---DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMT 325 (533)
Q Consensus 266 ~~~~~i~~~~---~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~----------G~LGFLt 325 (533)
..=+.+.+.- ....+.+. ..++|.+|++|||||+-.|.+... +..++|+||.- =++||-|
T Consensus 151 ~GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdT 230 (484)
T PLN02564 151 RGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDT 230 (484)
T ss_pred CCCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHH
Confidence 0000111110 00111111 247999999999999988877654 34456999874 2788877
Q ss_pred cCCcchHHHHHHHHH
Q 009486 326 PFHSEHYKDYLDSVL 340 (533)
Q Consensus 326 ~~~~ed~~~~L~~ll 340 (533)
.++ .+.++|+.+.
T Consensus 231 Av~--~~~~aI~~i~ 243 (484)
T PLN02564 231 AVE--EAQRAINAAH 243 (484)
T ss_pred HHH--HHHHHHHHHH
Confidence 543 4555666654
No 79
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=81.78 E-value=3.6 Score=43.62 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+-+... ....+.+.|.+ .++++.+-..+.. ++.++.+. .-.... ..++|+||.+||
T Consensus 23 ~~~~livtd~~~~----~~~~~~~~l~~-~~~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG- 86 (367)
T cd08182 23 GKRVLLVTGPRSA----IASGLTDILKP-LGTLVVVFDDVQP-----NPDLEDLA-----AGIRLLREFGPDAVLAVGG- 86 (367)
T ss_pred CCeEEEEeCchHH----HHHHHHHHHHH-cCCeEEEEcCcCC-----CcCHHHHH-----HHHHHHHhcCcCEEEEeCC-
Confidence 3689999865433 44667777765 4566554322211 11111111 001111 246899999999
Q ss_pred hHHHHHHHhcC
Q 009486 297 GTVLWAASIFK 307 (533)
Q Consensus 297 GTlL~aar~~~ 307 (533)
|+++-+++.+.
T Consensus 87 Gs~~D~aK~ia 97 (367)
T cd08182 87 GSVLDTAKALA 97 (367)
T ss_pred cHHHHHHHHHH
Confidence 99999988763
No 80
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=81.46 E-value=4 Score=41.76 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHH-hhh-CCCccEEEEEe
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI-LLL-HTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~-~~~-~~~~DlVIvLG 294 (533)
..++++||+-++-.++ ..+++.+.|+. .++++.+-...... ..... ...+ ..+ ..++|+||.+|
T Consensus 18 ~~~~~lvv~d~~t~~~--~g~~v~~~l~~-~g~~v~~~~~~~~~-----~~~~~------~~~~~~~~~~~~~d~ii~vG 83 (250)
T PF13685_consen 18 GLKKVLVVTDENTYKA--AGEKVEESLKS-AGIEVAVIEEFVGD-----ADEDE------VEKLVEALRPKDADLIIGVG 83 (250)
T ss_dssp T-SEEEEEEETTHHHH--HHHHHHHHHHT-TT-EEEEEE-EE--------BHHH------HHHHHTTS--TT--EEEEEE
T ss_pred CCCcEEEEEcCCHHHH--HHHHHHHHHHH-cCCeEEEEecCCCC-----CCHHH------HHHHHHHhcccCCCEEEEeC
Confidence 3478999998764433 35677777764 57777531100000 00000 0111 122 35789999999
Q ss_pred CchHHHHHHHhcC-CCCCcEEEEeC--CCCccCccC
Q 009486 295 GDGTVLWAASIFK-GPVPPIVPFSL--GSLGFMTPF 327 (533)
Q Consensus 295 GDGTlL~aar~~~-~~~~PILGIN~--G~LGFLt~~ 327 (533)
| ||+.-.+++.. ..++|.+.|.+ =+-||-+++
T Consensus 84 g-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~~ 118 (250)
T PF13685_consen 84 G-GTIIDIAKYAAFELGIPFISVPTAASHDGFASPV 118 (250)
T ss_dssp S-HHHHHHHHHHHHHHT--EEEEES--SSGGGTSSE
T ss_pred C-cHHHHHHHHHHHhcCCCEEEeccccccccccCCC
Confidence 9 99999999887 45889999887 356665543
No 81
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=81.02 E-value=6.5 Score=41.90 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=43.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-+... ...++...|++ .++++.+.. +.. ++....+. .-.... ..++|+||.||| |
T Consensus 23 ~r~livtd~~~~----~~~~v~~~L~~-~g~~~~~~~-~~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 85 (374)
T cd08183 23 RRVLLVTGASSL----RAAWLIEALRA-AGIEVTHVV-VAG-----EPSVELVD-----AAVAEARNAGCDVVIAIGG-G 85 (374)
T ss_pred CcEEEEECCchH----HHHHHHHHHHH-cCCeEEEec-CCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEecC-c
Confidence 789999865432 67788888875 567665432 110 11111111 001111 257999999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
.++-+++.+
T Consensus 86 S~~D~aK~i 94 (374)
T cd08183 86 SVIDAGKAI 94 (374)
T ss_pred hHHHHHHHH
Confidence 999998865
No 82
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=80.80 E-value=7.4 Score=40.87 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=51.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-chhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-RVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~-~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
++++||+-+.-... ...++.+.|.+ .++++.+.. ... .++..+.+. .-...+..++|+||.||| |
T Consensus 25 ~kvlivtd~~~~~~--~~~~i~~~L~~-~~~~~~i~~~~~~-----~~p~~~~v~-----~~~~~~~~~~d~IIaiGG-G 90 (332)
T cd08549 25 SKIMIVCGNNTYKV--AGKEIIERLES-NNFTKEVLERDSL-----LIPDEYELG-----EVLIKLDKDTEFLLGIGS-G 90 (332)
T ss_pred CcEEEEECCcHHHH--HHHHHHHHHHH-cCCeEEEEecCCC-----CCCCHHHHH-----HHHHHhhcCCCEEEEECC-c
Confidence 68999987655443 34788888865 455443311 110 011111111 111122237999999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~ 318 (533)
+++-+++.+. ..++|++-|.+
T Consensus 91 sv~D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 91 TIIDLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 9999998775 34789998886
No 83
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=80.61 E-value=3.8 Score=42.51 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+-..-.. ....++.+.|.+. +++.+...+.. ++.++.+. .-...+ ..++|+||.+||
T Consensus 23 ~~~~liv~~~~~~~--~~~~~v~~~l~~~--~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG- 87 (332)
T cd07766 23 FDRALVVSDEGVVK--GVGEKVADSLKKL--IAVHIFDGVGP-----NPTFEEVK-----EAVERARAAEVDAVIAVGG- 87 (332)
T ss_pred CCeEEEEeCCchhh--hHHHHHHHHHHhc--CcEEEeCCcCC-----CcCHHHHH-----HHHHHHHhcCcCEEEEeCC-
Confidence 46899998544332 5567788888642 33322211110 01111111 001111 257999999999
Q ss_pred hHHHHHHHhcCC---CCCcEEEEeC
Q 009486 297 GTVLWAASIFKG---PVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~~---~~~PILGIN~ 318 (533)
|+++-+++.+.. ..+|++-|.+
T Consensus 88 Gs~~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 88 GSTLDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEeC
Confidence 999999987642 2789999886
No 84
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=80.59 E-value=6.7 Score=41.66 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-+.-. .....++.+.|.+ .++++.+.. +.. + +..+.+. .-.... ..++|+||.||| |
T Consensus 30 ~~~livtd~~~~--~~~~~~v~~~l~~-~~~~~~~~~-~~~----e-p~~~~v~-----~~~~~~~~~~~d~IIavGG-G 94 (366)
T PRK09423 30 KRALVIADEFVL--GIVGDRVEASLKE-AGLTVVFEV-FNG----E-CSDNEID-----RLVAIAEENGCDVVIGIGG-G 94 (366)
T ss_pred CEEEEEEChhHH--HHHHHHHHHHHHh-CCCeEEEEE-eCC----C-CCHHHHH-----HHHHHHHhcCCCEEEEecC-h
Confidence 789999854433 2367888888865 466553321 110 0 1111111 001111 246899999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~ 318 (533)
+++-+++.+. ...+|++.|.+
T Consensus 95 sv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 95 KTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 9999999875 34689999886
No 85
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=80.38 E-value=4 Score=43.34 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. ++....+. .-.... ..++|+||.|||
T Consensus 24 ~~~~liv~~~~~~~-~~~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG- 90 (370)
T cd08192 24 IKRPLIVTDPGLAA-LGLVARVLALLED-AGLAAALFDEVPP-----NPTEAAVE-----AGLAAYRAGGCDGVIAFGG- 90 (370)
T ss_pred CCeEEEEcCcchhh-CccHHHHHHHHHH-cCCeEEEeCCCCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 36899998654321 2356788898965 5666644222111 11111110 001111 257899999999
Q ss_pred hHHHHHHHhc
Q 009486 297 GTVLWAASIF 306 (533)
Q Consensus 297 GTlL~aar~~ 306 (533)
|+++-+++.+
T Consensus 91 GSviD~aK~i 100 (370)
T cd08192 91 GSALDLAKAV 100 (370)
T ss_pred chHHHHHHHH
Confidence 9999998765
No 86
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=79.74 E-value=5.2 Score=42.87 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=44.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDG 297 (533)
++++||+...-.. .....++.+.|.+ .++++.+-..+.. +.+... +. .... ....++|+||.||| |
T Consensus 23 ~~~livt~~~~~~-~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~-v~-----~~~~~~~~~~~D~IIaiGG-G 89 (386)
T cd08191 23 SRALIVTDERMAG-TPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSE-LC-----DAASAAARAGPDVIIGLGG-G 89 (386)
T ss_pred CeEEEEECcchhh-cchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHH-HH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 7899999544322 3466778888865 5666654322210 000000 00 0011 11257899999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
.++-+++.+.
T Consensus 90 S~iD~aK~ia 99 (386)
T cd08191 90 SCIDLAKIAG 99 (386)
T ss_pred hHHHHHHHHH
Confidence 9999998764
No 87
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=79.71 E-value=0.81 Score=47.36 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=66.1
Q ss_pred CEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC---c------c-----cccc-----cccchH
Q 009486 219 QTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS---Y------F-----SFVQ-----TWKDEK 278 (533)
Q Consensus 219 k~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~---~------~-----~~i~-----~~~~~~ 278 (533)
|+|+|+.-- +.|-.-....-+++.... ++.+||--.+=...+..... . + ..+. .+...+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~-~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~~ 79 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR-RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDPE 79 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH-TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSHH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh-cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccchh
Confidence 578888764 556666677788887754 67888764333332221100 0 0 0010 111111
Q ss_pred HHh---h-h-CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 279 EIL---L-L-HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 279 ~~~---~-~-~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
... + + ..++|.+|++|||||+-.+..+.....+||+||.. | ++||-|..+ .+-+.++.+.
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~--~~~~~i~~i~ 154 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVN--YIAEAIDNIK 154 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHH--HHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhH--HHHHHHHHHH
Confidence 110 1 1 25799999999999977766654344589999974 3 688866543 3445555543
No 88
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=79.56 E-value=7.9 Score=44.00 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=55.3
Q ss_pred cCCCCEEEEEEcCC--ChhHHHHHHHHHHHHHhcCCeEEEEc----cchhHHhhhcCCcccccccccchHHHhhhCCCcc
Q 009486 215 ESPPQTVVILTKPN--SNSVQILCAQMVRWLREQKKLNIYVE----PRVRAELLTESSYFSFVQTWKDEKEILLLHTKVD 288 (533)
Q Consensus 215 ~~~pk~VlIV~K~~--~~~~~~~~~el~~~L~e~~gi~V~ve----~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~D 288 (533)
...+++++|+.||. +-.+.+++...++-|....++.+-+- +.-|+++. ......+.|
T Consensus 176 ~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~-----------------rt~dl~kyD 238 (579)
T KOG1116|consen 176 LKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIV-----------------RTLDLGKYD 238 (579)
T ss_pred cCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHH-----------------Hhhhccccc
Confidence 34588999999984 55666776666665544345443321 22222221 112457899
Q ss_pred EEEEEeCchHHHHHHHhcC-------CCCCcEEEEeCCC
Q 009486 289 LVVTLGGDGTVLWAASIFK-------GPVPPIVPFSLGS 320 (533)
Q Consensus 289 lVIvLGGDGTlL~aar~~~-------~~~~PILGIN~G~ 320 (533)
-||++||||++--+..-+- ...+||-=|-+|+
T Consensus 239 gIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GS 277 (579)
T KOG1116|consen 239 GIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGS 277 (579)
T ss_pred eEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCC
Confidence 9999999999988876443 1346776666664
No 89
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=79.45 E-value=5.9 Score=41.61 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=50.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE---EccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEE
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY---VEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTL 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~---ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvL 293 (533)
.++++||+...-.. ....++.+.|.+ .++++. ++... ..+....+... .....+. ..+.|+||.+
T Consensus 20 ~~~~livtd~~~~~--~~~~~v~~~L~~-~g~~~~~~~~~~~e------~~~~~~~v~~~--~~~~~~~~~~r~d~IIav 88 (344)
T TIGR01357 20 PSKLVIITDETVAD--LYADKLLEALQA-LGYNVLKLTVPDGE------ESKSLETVQRL--YDQLLEAGLDRSSTIIAL 88 (344)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHh-cCCceeEEEeCCCC------CCCCHHHHHHH--HHHHHHcCCCCCCEEEEE
Confidence 37899998654433 357778888865 455442 22110 00000001000 0011111 1345999999
Q ss_pred eCchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 294 GGDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 294 GGDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
|| |+++-+++.+. ..++|++-|.+
T Consensus 89 GG-Gsv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 89 GG-GVVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred cC-hHHHHHHHHHHHHHccCCCEEEecC
Confidence 99 99999988774 45788888876
No 90
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=79.07 E-value=14 Score=37.65 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++||+++.++.+......+++.+...+ .|+++..-+ +.. ...+ ...+..+..+.|.+ .++.|+
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~-v~~-----------~~~~--~~~~~~l~~~~da~-~~~~~~ 194 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIP-VPS-----------SEDL--EQALEALAEKVDAL-YLLPDN 194 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEE-ESS-----------GGGH--HHHHHHHCTT-SEE-EE-S-H
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEe-cCc-----------HhHH--HHHHHHhhccCCEE-EEECCc
Confidence 6899999998887666777777777765 677765321 110 0001 12344566778855 456788
Q ss_pred HHHHH----HHhcCCCCCcEEEEeCC--CCccCccCCcchH------HHHHHHHHcCC
Q 009486 298 TVLWA----ASIFKGPVPPIVPFSLG--SLGFMTPFHSEHY------KDYLDSVLRGP 343 (533)
Q Consensus 298 TlL~a----ar~~~~~~~PILGIN~G--~LGFLt~~~~ed~------~~~L~~ll~G~ 343 (533)
++... .+......+|++|.+-. .-|.|..+..+-+ -+...++++|.
T Consensus 195 ~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~Gal~~~~~~~~~~G~~Aa~~a~~IL~G~ 252 (294)
T PF04392_consen 195 LVDSNFEAILQLANEAKIPVFGSSDFYVKAGALGGYSVDYYEQGRQAAEMAVRILKGE 252 (294)
T ss_dssp HHHHTHHHHHHHCCCTT--EEESSHHHHCTT-SEEEE--HHHHHHHHHHHHHHHCTT-
T ss_pred chHhHHHHHHHHHHhcCCCEEECCHHHhcCCcEEEEccCHHHHHHHHHHHHHHHHCCC
Confidence 88753 34445778999997642 2345554443322 23466777874
No 91
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=78.98 E-value=11 Score=40.02 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEe
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~--ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLG 294 (533)
.++++||+-..-.. .+..++.+.|.+ .++++. +-+... .++....+... .....+. ..+.|+||.+|
T Consensus 31 ~~~~livtd~~~~~--~~~~~v~~~L~~-~gi~~~~~~~~~~e-----~~~~~~~v~~~--~~~~~~~~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVAP--LYLEKLRASLEA-AGFEVDVVVLPDGE-----QYKSLETLEKI--YDALLEAGLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHh-cCCceEEEEeCCCC-----CCCCHHHHHHH--HHHHHHcCCCCCCEEEEEc
Confidence 47899999654433 467788888865 455443 211110 00000000000 0011111 13469999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 295 GDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 295 GDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
| |+++-+++.+. ..++|++-|.+
T Consensus 101 G-Gsv~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 101 G-GVIGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred C-cHHHHHHHHHHHHhcCCCCEEEcCc
Confidence 9 99999998774 56789888876
No 92
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=78.80 E-value=9.2 Score=40.49 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=49.0
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-+.-... ...++.+.|.+...+.+++.++ .....+. .-...+ ..++|+||.+|| |
T Consensus 35 ~~~livtd~~~~~~--~~~~l~~~l~~~~~~~~~~~~~---------~t~~~v~-----~~~~~~~~~~~d~IIaiGG-G 97 (350)
T PRK00843 35 GRALIVTGPTTKKI--AGDRVEENLEDAGDVEVVIVDE---------ATMEEVE-----KVEEKAKDVNAGFLIGVGG-G 97 (350)
T ss_pred CeEEEEECCcHHHH--HHHHHHHHHHhcCCeeEEeCCC---------CCHHHHH-----HHHHHhhccCCCEEEEeCC-c
Confidence 68899987655433 3466777776432233333221 0111010 001111 235899999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~ 318 (533)
+++-+++.+. ..++|++-|.+
T Consensus 98 sv~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 98 KVIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred hHHHHHHHHHHhcCCCEEEeCC
Confidence 9999998765 34788888876
No 93
>PRK03202 6-phosphofructokinase; Provisional
Probab=78.80 E-value=1.9 Score=45.51 Aligned_cols=53 Identities=25% Similarity=0.450 Sum_probs=39.6
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
.++|.+|++|||||+-.+.++. ..++||+||.. | ++||-|..+ .+-+.++.+.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~--~~~~~i~~l~ 154 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALN--TAVEAIDRLR 154 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHH--HHHHHHHHHH
Confidence 5789999999999998887765 45899999874 3 788877543 3445555553
No 94
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=78.11 E-value=6.9 Score=41.87 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=42.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-+.-.. ..+..++...|.+ .++++.+-..+.. ++..+.+. .-... ...++|+||.||| |
T Consensus 31 ~~~lvvtd~~~~~-~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 97 (382)
T PRK10624 31 KKALIVTDKTLVK-CGVVAKVTDVLDA-AGLAYEIYDGVKP-----NPTIEVVK-----EGVEVFKASGADYLIAIGG-G 97 (382)
T ss_pred CEEEEEeCcchhh-CcchHHHHHHHHH-CCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-h
Confidence 6899998643221 2356788888865 4666554322211 11111110 00111 1247999999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
.++-+++.+
T Consensus 98 S~iD~aK~i 106 (382)
T PRK10624 98 SPQDTCKAI 106 (382)
T ss_pred HHHHHHHHH
Confidence 999999754
No 95
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=77.81 E-value=6.9 Score=41.51 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=52.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+.+.-.+ ....++.+.|....++.+++-+.... .+....+... .....+. ....|+||.+||
T Consensus 23 ~~k~livtd~~v~~--~~~~~v~~~L~~~~~~~~~~~~~~e~-----~k~~~~v~~~--~~~~~~~~~~r~d~IIaiGG- 92 (344)
T cd08169 23 FDQYFFISDSGVAD--LIAHYIAEYLSKILPVHILVIEGGEE-----YKTFETVTRI--LERAIALGANRRTAIVAVGG- 92 (344)
T ss_pred CCeEEEEECccHHH--HHHHHHHHHHHhhcCceEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCcEEEEECC-
Confidence 47899998655433 46778888885413555544222111 1111111000 0011111 245899999999
Q ss_pred hHHHHHHHhcC---CCCCcEEEEeC
Q 009486 297 GTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~---~~~~PILGIN~ 318 (533)
|+++-+++.+. ..++|++-|.+
T Consensus 93 Gsv~D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 93 GATGDVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred cHHHHHHHHHHHHhccCCcEEEecC
Confidence 99999887764 34778888776
No 96
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=77.66 E-value=8.4 Score=41.06 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=43.0
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. ++....+. .-... ...++|+||.||| |
T Consensus 27 ~~~lvvt~~~~~~-~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG-G 93 (374)
T cd08189 27 KKVLIVTDKGLVK-LGLLDKVLEALEG-AGIEYAVYDGVPP-----DPTIENVE-----AGLALYRENGCDAILAVGG-G 93 (374)
T ss_pred CeEEEEeCcchhh-cccHHHHHHHHHh-cCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 6899998654322 2346778888865 4666654322211 11111110 00011 1257899999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
.++-+++.+
T Consensus 94 S~~D~aK~i 102 (374)
T cd08189 94 SVIDCAKAI 102 (374)
T ss_pred cHHHHHHHH
Confidence 999999865
No 97
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=77.65 E-value=6.5 Score=42.01 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=43.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++||+-+.-. ...+..++...|.+ .++++.+-..+.. ++..+.+.. .... -...++|+||.||| |
T Consensus 29 ~~r~lvvt~~~~~-~~g~~~~v~~~L~~-~~i~~~~~~~v~~-----~p~~~~v~~---~~~~-~~~~~~D~IiaiGG-G 96 (379)
T TIGR02638 29 FKKALVVTDKDLI-KFGVADKVTDLLDE-AGIAYELFDEVKP-----NPTITVVKA---GVAA-FKASGADYLIAIGG-G 96 (379)
T ss_pred CCEEEEEcCcchh-hccchHHHHHHHHH-CCCeEEEECCCCC-----CcCHHHHHH---HHHH-HHhcCCCEEEEeCC-h
Confidence 3689999865421 12256788888865 5666654322211 111111100 0000 01357899999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
.++-+++.+
T Consensus 97 SviD~aKai 105 (379)
T TIGR02638 97 SPIDTAKAI 105 (379)
T ss_pred HHHHHHHHH
Confidence 999999753
No 98
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=77.43 E-value=4.6 Score=43.62 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++|++.+.-.. ..+..++.+.|++ .++++.+...+.. ++....+.. .... --..++|+||.||| |
T Consensus 49 ~~~~lvv~~~~~~~-~g~~~~v~~~L~~-~gi~~~~~~~v~~-----~P~~~~v~~---~~~~-~r~~~~D~IiavGG-G 116 (395)
T PRK15454 49 LKHLFVMADSFLHQ-AGMTAGLTRSLAV-KGIAMTLWPCPVG-----EPCITDVCA---AVAQ-LRESGCDGVIAFGG-G 116 (395)
T ss_pred CCEEEEEcCcchhh-CccHHHHHHHHHH-cCCeEEEECCCCC-----CcCHHHHHH---HHHH-HHhcCcCEEEEeCC-h
Confidence 37888887643222 3446788888865 5777655332221 011000000 0000 01357999999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
..+-+++.+
T Consensus 117 S~iD~AKai 125 (395)
T PRK15454 117 SVLDAAKAV 125 (395)
T ss_pred HHHHHHHHH
Confidence 999999875
No 99
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=77.10 E-value=6 Score=42.55 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=42.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-+.-. ......++.+.|++ .++++.+-..+.. ++....+. .-... ...++|+||.||| |
T Consensus 22 ~k~liVtd~~~~-~~g~~~~v~~~L~~-~gi~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 88 (398)
T cd08178 22 KRAFIVTDRFMV-KLGYVDKVIDVLKR-RGVETEVFSDVEP-----DPSLETVR-----KGLELMNSFKPDTIIALGG-G 88 (398)
T ss_pred CeEEEEcChhHH-hCccHHHHHHHHHH-CCCeEEEecCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 689999853311 11256778888875 4677654322211 11111111 00111 1357899999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
.++-+++.+.
T Consensus 89 S~iD~AK~iA 98 (398)
T cd08178 89 SPMDAAKIMW 98 (398)
T ss_pred cHHHHHHHHH
Confidence 9999887653
No 100
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=77.02 E-value=8.1 Score=41.22 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHHhhhcCCcccccccccchHHHhh--hCCCccEEEE
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILL--LHTKVDLVVT 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~--ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~DlVIv 292 (533)
.+++++||+-+.-.. ....++.+.|.+ .++.+. +-+... ..+.+..+... ...+.+ ...++|+||.
T Consensus 25 ~~~~~lvVtd~~v~~--~~~~~v~~~l~~-~g~~~~~~v~~~~e-----~~~s~~~v~~~--~~~l~~~~~~r~~d~IVa 94 (354)
T cd08199 25 GSGRRFVVVDQNVDK--LYGKKLREYFAH-HNIPLTILVLRAGE-----AAKTMDTVLKI--VDALDAFGISRRREPVLA 94 (354)
T ss_pred CCCeEEEEECccHHH--HHHHHHHHHHHh-cCCceEEEEeCCCC-----CCCCHHHHHHH--HHHHHHcCCCCCCCEEEE
Confidence 578999998554432 245778888864 455433 211110 00111111000 000111 1123499999
Q ss_pred EeCchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 293 LGGDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 293 LGGDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
+|| |+++-+++.++ ..++|++-|.+
T Consensus 95 iGG-G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 95 IGG-GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred ECC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 999 99999998775 56778777665
No 101
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=76.85 E-value=5.2 Score=43.34 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=49.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++||+-+.- .-..++.++++.|.+ .++++.+...+..+ +..+.+. ...+. --..++|+||.||| |
T Consensus 29 ~~r~liVTd~~~-~~~g~~~~v~~~L~~-~~i~~~if~~v~p~-----P~~~~v~---~~~~~-~~~~~~D~iIalGG-G 96 (377)
T COG1454 29 AKRALIVTDRGL-AKLGLLDKVLDSLDA-AGIEYEVFDEVEPE-----PTIETVE---AGAEV-AREFGPDTIIALGG-G 96 (377)
T ss_pred CCceEEEECCcc-ccchhHHHHHHHHHh-cCCeEEEecCCCCC-----CCHHHHH---HHHHH-HHhcCCCEEEEeCC-c
Confidence 378999998763 334678999999976 56776664433221 1111110 00010 11357999999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
..+-+|+.+.
T Consensus 97 S~~D~AK~i~ 106 (377)
T COG1454 97 SVIDAAKAIA 106 (377)
T ss_pred cHHHHHHHHH
Confidence 9999998654
No 102
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=76.68 E-value=1.8 Score=45.98 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=40.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHHc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVLR 341 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll~ 341 (533)
.++|.+|++|||||+-.+..+.. +.++||+||.. | ++||-|..+ .+.++++.+..
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~--~~~~~i~~l~~ 160 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK--TIVEAIDRIRD 160 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH--HHHHHHHHHHH
Confidence 56899999999999988876543 34799999975 3 688866543 45566666654
No 103
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=76.65 E-value=14 Score=38.89 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=50.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCC--eEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEe
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKK--LNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~g--i~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLG 294 (533)
.++++||+-+.-.+ ....++.+.|.+ .+ +.+++-+... .++.+..+... ...+.+. ....|+||.+|
T Consensus 24 ~~~~livtd~~~~~--~~~~~l~~~L~~-~g~~~~~~~~~~~e-----~~~~~~~v~~~--~~~~~~~~~~r~d~IIaiG 93 (345)
T cd08195 24 GSKILIVTDENVAP--LYLEKLKAALEA-AGFEVEVIVIPAGE-----ASKSLETLEKL--YDALLEAGLDRKSLIIALG 93 (345)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHh-cCCceEEEEeCCCC-----CcCCHHHHHHH--HHHHHHcCCCCCCeEEEEC
Confidence 47899998655443 467788888865 34 3333211100 00111111000 0011111 13459999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 295 GDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 295 GDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
| |+++-+++.+. ..++|++-|.+
T Consensus 94 G-Gsv~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 94 G-GVVGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred C-hHHHhHHHHHHHHHhcCCCeEEcch
Confidence 9 99999988765 45788877765
No 104
>PRK07053 glutamine amidotransferase; Provisional
Probab=76.30 E-value=7 Score=39.30 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
|++|+||-+...+.. ..+.+||.+ .|+.+.+-.....+ .. .....++|.+|+.||-.
T Consensus 2 m~~ilviqh~~~e~~----g~i~~~L~~-~g~~~~v~~~~~~~-----------------~~-~~~~~~~d~lii~Ggp~ 58 (234)
T PRK07053 2 MKTAVAIRHVAFEDL----GSFEQVLGA-RGYRVRYVDVGVDD-----------------LE-TLDALEPDLLVVLGGPI 58 (234)
T ss_pred CceEEEEECCCCCCC----hHHHHHHHH-CCCeEEEEecCCCc-----------------cC-CCCccCCCEEEECCCCC
Confidence 578999998766554 447888875 46555432110000 00 00124689999999753
Q ss_pred H------------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 T------------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 T------------lL~aar~~~~~~~PILGIN~G~ 320 (533)
. ++...+.+...++|||||-+|.
T Consensus 59 ~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 59 GVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2 2233343445678999999997
No 105
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=76.29 E-value=8.2 Score=40.40 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=48.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++||+-+.-.. ..+..++.+.|.+. +.+.+-..+.. ++..+.+... .... ...++|+||.+|| |
T Consensus 22 ~~~~lvv~~~~~~~-~g~~~~v~~~l~~~--~~~~~~~~v~~-----~p~~~~v~~~--~~~~--~~~~~d~IiaiGG-G 88 (332)
T cd08180 22 NKRVLIVTDPFMVK-SGMLDKVTDHLDSS--IEVEIFSDVVP-----DPPIEVVAKG--IKKF--LDFKPDIVIALGG-G 88 (332)
T ss_pred CCeEEEEeCchhhh-CccHHHHHHHHHhc--CcEEEeCCCCC-----CcCHHHHHHH--HHHH--HhcCCCEEEEECC-c
Confidence 37899998543221 12567788888642 44433221110 1111111000 0001 1246899999999 9
Q ss_pred HHHHHHHhc--------CCCCCcEEEEeC
Q 009486 298 TVLWAASIF--------KGPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~--------~~~~~PILGIN~ 318 (533)
.++-+++.+ ....+|++.|.+
T Consensus 89 s~~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 89 SAIDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 999999843 123479999886
No 106
>PRK06490 glutamine amidotransferase; Provisional
Probab=76.10 E-value=4 Score=41.17 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
..+|++|-+...... ..+.+||++ .+.++.+-..... + ...+...++|.+|+.||-+
T Consensus 7 ~~~vlvi~h~~~~~~----g~l~~~l~~-~g~~~~v~~~~~~----~--------------~~p~~l~~~dgvii~Ggp~ 63 (239)
T PRK06490 7 KRPVLIVLHQERSTP----GRVGQLLQE-RGYPLDIRRPRLG----D--------------PLPDTLEDHAGAVIFGGPM 63 (239)
T ss_pred CceEEEEecCCCCCC----hHHHHHHHH-CCCceEEEeccCC----C--------------CCCCcccccCEEEEECCCC
Confidence 468999988765543 457888875 4555443211000 0 0001134689999999987
Q ss_pred HH------H----HHHHhcCCCCCcEEEEeCCC
Q 009486 298 TV------L----WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 Tl------L----~aar~~~~~~~PILGIN~G~ 320 (533)
++ + ...+.+....+|||||-+|.
T Consensus 64 ~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 64 SANDPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred CCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 53 2 22333334578999999997
No 107
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=75.60 E-value=2.5 Score=47.83 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=37.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CCccCccCCcchHHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSEHYKDYLDSV 339 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G-----~LGFLt~~~~ed~~~~L~~l 339 (533)
.++|.+|++|||||+-.|+.+.. +..+||+||.. | ++||-|... -+-+.+..+
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~--~~~~~I~~i 229 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACK--IYSELIGNI 229 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH--HHHHHHHHH
Confidence 57899999999999988877653 45699999874 2 667755433 233444444
No 108
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.05 E-value=8.4 Score=40.56 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=49.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-+.- ...+..++.+.|. ..++.+.+-..+. ....+. .-.... ..++|+||.+|| |
T Consensus 24 ~~~liv~d~~~--~~~~~~~l~~~L~-~~~~~~~~~~~~p--------~~~~v~-----~~~~~~~~~~~D~iIavGG-G 86 (347)
T cd08172 24 KRPLIVTGPRS--WAAAKPYLPESLA-AGEAFVLRYDGEC--------SEENIE-----RLAAQAKENGADVIIGIGG-G 86 (347)
T ss_pred CeEEEEECHHH--HHHHHHHHHHHHh-cCeEEEEEeCCCC--------CHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 68889886543 2345667777774 3455544322210 000010 001111 247899999999 9
Q ss_pred HHHHHHHhcCC-CCCcEEEEeC
Q 009486 298 TVLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~~-~~~PILGIN~ 318 (533)
+++-+++.+.. ..+|++.|.+
T Consensus 87 s~~D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 87 KVLDTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEecC
Confidence 99999998752 4679988886
No 109
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=74.79 E-value=36 Score=29.52 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=57.9
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+++....-....-++.++-++|.+ .|+++-++..-.. +++....++|+||+-. +
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~-------------------e~~~~~~~~D~iv~t~-~--- 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVN-------------------EIETYMDGVHLICTTA-R--- 59 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHH-------------------HHhhhcCCCCEEEECC-c---
Confidence 78999887776666667888889976 6787766541111 1122235689886633 1
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcC
Q 009486 300 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G 342 (533)
+ ...+. .+|++-+ ++||+.++.+++++.|..++.|
T Consensus 60 ~--~~~~~--~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 60 V--DRSFG--DIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred c--ccccC--CCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1 11111 4674322 4689999999999988888775
No 110
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=74.76 E-value=2.6 Score=47.95 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhc---------------CCccccccc----cc
Q 009486 217 PPQTVVILTKP-NSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTE---------------SSYFSFVQT----WK 275 (533)
Q Consensus 217 ~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~---------------~~~~~~i~~----~~ 275 (533)
.+++||||+-- +.|.......-+++.++.. ++.+||--..-...+... ...++.+.+ +.
T Consensus 95 ~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~ 174 (568)
T PLN02251 95 QKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIE 174 (568)
T ss_pred ccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcC
Confidence 34789999764 6677777777888887542 455654322111111100 011111111 11
Q ss_pred chHHHhhh-----CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CCccCccCCcchHH
Q 009486 276 DEKEILLL-----HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSEHYK 333 (533)
Q Consensus 276 ~~~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G-----~LGFLt~~~~ed~~ 333 (533)
.++.+... .-++|.+|++|||||+-.|+.+.. +..++|+||.- | ++||=|... -+-
T Consensus 175 ~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k--~~a 252 (568)
T PLN02251 175 TPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACK--IYS 252 (568)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHH--HHH
Confidence 11111111 247899999999999998877543 45699999874 2 567765432 334
Q ss_pred HHHHHHH
Q 009486 334 DYLDSVL 340 (533)
Q Consensus 334 ~~L~~ll 340 (533)
+.+..+.
T Consensus 253 ~~I~ni~ 259 (568)
T PLN02251 253 EMIGNVM 259 (568)
T ss_pred HHHHHHH
Confidence 4555544
No 111
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=74.42 E-value=2.8 Score=47.60 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL 318 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~ 318 (533)
-++|.+|++|||||+-.|+.+.. +..+||+||..
T Consensus 163 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPk 201 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPK 201 (555)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEee
Confidence 47899999999999998877553 45899999853
No 112
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=73.89 E-value=2.9 Score=47.97 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEe
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFS 317 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN 317 (533)
-++|.+|++|||||+-.|+.+.. +..++|+||.
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 46899999999999988877543 4579999985
No 113
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=73.64 E-value=11 Score=40.79 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=26.7
Q ss_pred CCccEEEEEeCchHHHHHHHhcC---CCCCcEEEEeCC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK---GPVPPIVPFSLG 319 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~---~~~~PILGIN~G 319 (533)
...|+||.+|| |+++-++..+. ..++|++-|.+=
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34569999999 99999987764 457888888763
No 114
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=73.26 E-value=3.2 Score=45.43 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=15.6
Q ss_pred CCccEEEEEeCchHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAAS 304 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar 304 (533)
..+|-+|++||||-|=-..+
T Consensus 216 ~~yDGiv~VGGDG~FnEiL~ 235 (516)
T KOG1115|consen 216 HTYDGIVAVGGDGFFNEILN 235 (516)
T ss_pred hhcccEEEecCchhHHHHHh
Confidence 46899999999997655444
No 115
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=72.82 E-value=14 Score=35.74 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=46.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 300 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 300 (533)
|+||-+.+.= ...+++||++ .|+.+.+-+.... +..++. ..++|.+|..||.|..-
T Consensus 2 il~id~~dsf-----t~~~~~~l~~-~g~~~~~~~~~~~----------------~~~~~~--~~~~~~iilsgGp~~~~ 57 (193)
T PRK08857 2 LLMIDNYDSF-----TYNLYQYFCE-LGAQVKVVRNDEI----------------DIDGIE--ALNPTHLVISPGPCTPN 57 (193)
T ss_pred EEEEECCCCc-----HHHHHHHHHH-CCCcEEEEECCCC----------------CHHHHh--hCCCCEEEEeCCCCChH
Confidence 6777765543 5679999976 5666654321100 001111 23479999999998753
Q ss_pred ------HHHHhcCCCCCcEEEEeCCC
Q 009486 301 ------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 301 ------~aar~~~~~~~PILGIN~G~ 320 (533)
...+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 58 EAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred HCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 333444 3578999999996
No 116
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=72.47 E-value=3.2 Score=47.05 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=37.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CCccCccCCcchHHHHHHHHH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G-----~LGFLt~~~~ed~~~~L~~ll 340 (533)
-++|.+|++|||||+-.|+.+.. +..++|+||.. | ++||=|... -+-+.+..+.
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k--~~a~~I~ni~ 235 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATK--IYSELIGNVM 235 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH--HHHHHHHHHH
Confidence 46899999999999988876543 45689999874 3 667755433 2334454444
No 117
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=72.17 E-value=13 Score=39.12 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=49.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEE--EEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNI--YVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V--~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
++++||+-+... .....++.+.|.+ .++.+ ++-.. .+..+.+. .-.... ..++|+||.+||
T Consensus 23 ~~~liv~~~~~~--~~~~~~v~~~l~~-~~i~~~~~~~~~--------~p~~~~v~-----~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 23 SKVAVVGGKTVL--KKSRPRFEAALAK-SIIVVDVIVFGG--------ECSTEEVV-----KALCGAEEQEADVIIGVGG 86 (349)
T ss_pred CeEEEEEChHHH--HHHHHHHHHHHHh-cCCeeEEEEcCC--------CCCHHHHH-----HHHHHHHhcCCCEEEEecC
Confidence 678888854332 2456788888865 45432 22110 00000000 001111 247899999999
Q ss_pred chHHHHHHHhcCC-CCCcEEEEeC
Q 009486 296 DGTVLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 296 DGTlL~aar~~~~-~~~PILGIN~ 318 (533)
|+++-+++.+.. ..+|++-|.+
T Consensus 87 -Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 87 -GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred -cHHHHHHHHHHHHcCCCEEEeCC
Confidence 999999998753 4789999887
No 118
>PTZ00287 6-phosphofructokinase; Provisional
Probab=71.85 E-value=3.4 Score=51.15 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=67.1
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhc---------------CCccccccc-----ccc
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTE---------------SSYFSFVQT-----WKD 276 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~---------------~~~~~~i~~-----~~~ 276 (533)
..+|||++-- +.|.......-+++.+...+++.... .... .+... ...+..+.+ +..
T Consensus 836 ~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~~~gf-~G~~-GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t 913 (1419)
T PTZ00287 836 EIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGVCIAF-YGLY-GLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFD 913 (1419)
T ss_pred CcEEEEECcCCCcHhHHHHHHHHHHHHHHhCCeEEEE-eCch-hhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCC
Confidence 4799999864 66777777888888886544664322 1222 11100 001111111 111
Q ss_pred hHHHhhh-----CCCccEEEEEeCchHHHHHHHhcC---CCCCc--EEEEeC-------C-----CCccCccCCcchHHH
Q 009486 277 EKEILLL-----HTKVDLVVTLGGDGTVLWAASIFK---GPVPP--IVPFSL-------G-----SLGFMTPFHSEHYKD 334 (533)
Q Consensus 277 ~~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~---~~~~P--ILGIN~-------G-----~LGFLt~~~~ed~~~ 334 (533)
.+..... ..++|.+|+||||||+-.|+.+.. ..++| |+||.. | ++||=|... -+-+
T Consensus 914 ~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~--~~se 991 (1419)
T PTZ00287 914 KENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK--VYAS 991 (1419)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH--HHHH
Confidence 1111111 247899999999999998877543 24566 999874 3 677755432 3445
Q ss_pred HHHHHHc
Q 009486 335 YLDSVLR 341 (533)
Q Consensus 335 ~L~~ll~ 341 (533)
+|++|..
T Consensus 992 aI~nL~~ 998 (1419)
T PTZ00287 992 LIGNVLT 998 (1419)
T ss_pred HHHHHHH
Confidence 5666543
No 119
>PRK05637 anthranilate synthase component II; Provisional
Probab=71.80 E-value=8.8 Score=37.96 Aligned_cols=78 Identities=21% Similarity=0.176 Sum_probs=46.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
+++|+||=..+.- ...++++|++ .|..+.+-+.-. +...+. ..++|.||..||-|
T Consensus 1 ~~~il~iD~~dsf-----~~nl~~~l~~-~g~~~~v~~~~~-----------------~~~~l~--~~~~~~iIlsgGPg 55 (208)
T PRK05637 1 MTHVVLIDNHDSF-----VYNLVDAFAV-AGYKCTVFRNTV-----------------PVEEIL--AANPDLICLSPGPG 55 (208)
T ss_pred CCEEEEEECCcCH-----HHHHHHHHHH-CCCcEEEEeCCC-----------------CHHHHH--hcCCCEEEEeCCCC
Confidence 4678888765432 3567888865 455544422100 001111 23679999999999
Q ss_pred HHHHHH---HhcC--CCCCcEEEEeCCC
Q 009486 298 TVLWAA---SIFK--GPVPPIVPFSLGS 320 (533)
Q Consensus 298 TlL~aa---r~~~--~~~~PILGIN~G~ 320 (533)
..-.+. +.+. ...+|||||-+|.
T Consensus 56 ~~~d~~~~~~li~~~~~~~PiLGIClG~ 83 (208)
T PRK05637 56 HPRDAGNMMALIDRTLGQIPLLGICLGF 83 (208)
T ss_pred CHHHhhHHHHHHHHHhCCCCEEEEcHHH
Confidence 885541 2221 1368999999995
No 120
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=71.66 E-value=14 Score=38.53 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=27.6
Q ss_pred CccEEEEEeCchHHHHHHHhcC-CCCCcEEEEeC
Q 009486 286 KVDLVVTLGGDGTVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL~aar~~~-~~~~PILGIN~ 318 (533)
+.|+||.+|| |+++-+++.+. ...+|++-|.+
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecC
Confidence 6899999999 99999998875 35789988886
No 121
>PLN02335 anthranilate synthase
Probab=71.62 E-value=17 Score=36.25 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=48.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.-.+|+||=..+. ....|++||++ .|+.+.+-+.-.. +..++. ..++|.||..||-
T Consensus 17 ~~~~ilviD~~ds-----ft~~i~~~L~~-~g~~~~v~~~~~~----------------~~~~~~--~~~~d~iVisgGP 72 (222)
T PLN02335 17 QNGPIIVIDNYDS-----FTYNLCQYMGE-LGCHFEVYRNDEL----------------TVEELK--RKNPRGVLISPGP 72 (222)
T ss_pred ccCcEEEEECCCC-----HHHHHHHHHHH-CCCcEEEEECCCC----------------CHHHHH--hcCCCEEEEcCCC
Confidence 3457888854333 24679999987 4666665432000 001111 2358999999999
Q ss_pred hHH------HHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GTV------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTl------L~aar~~~~~~~PILGIN~G~ 320 (533)
|.. +...+.+ +..+|||||-+|.
T Consensus 73 g~p~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 73 GTPQDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred CChhhccchHHHHHHh-CCCCCEEEecHHH
Confidence 854 3334433 3468999999986
No 122
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=71.59 E-value=21 Score=42.21 Aligned_cols=121 Identities=17% Similarity=0.268 Sum_probs=67.9
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCccc----------------ccc-----cc
Q 009486 217 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFS----------------FVQ-----TW 274 (533)
Q Consensus 217 ~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~----------------~i~-----~~ 274 (533)
+.++|+|++-- +.|-.-...+-+++.... .+++||--.+-...+......+. .+. .+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~-~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~f 80 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY-VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKEF 80 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH-CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCcc
Confidence 45789999875 445555556677776654 57788764443333332211000 011 01
Q ss_pred cchHHHh-----hhCCCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEeC-------C-
Q 009486 275 KDEKEIL-----LLHTKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL-------G- 319 (533)
Q Consensus 275 ~~~~~~~-----~~~~~~DlVIvLGGDGTlL~aar~~----------------------~~~~~PILGIN~-------G- 319 (533)
...+... -...++|.+|++|||||+-.|..+. ....++|+||-- |
T Consensus 81 ~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 81 REREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 1011011 1135799999999999998876321 123678999863 3
Q ss_pred --CCccCccCCcchHHHHHHHHH
Q 009486 320 --SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 320 --~LGFLt~~~~ed~~~~L~~ll 340 (533)
++||-|..+ .+-++++.+.
T Consensus 161 D~TiGfdTAl~--~i~eaId~i~ 181 (762)
T cd00764 161 DMTIGTDSALH--RICEVVDAIT 181 (762)
T ss_pred cCCCCHHHHHH--HHHHHHHHHH
Confidence 688877543 3445555554
No 123
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=71.08 E-value=9.1 Score=44.80 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
..++|+||=.-+ . ....+.+||++ .|+++.+-+.... ....+ ..++|.||+.||-
T Consensus 515 ~~~~IlVID~gd-s----~~~~l~~~L~~-~G~~v~vv~~~~~------------------~~~~~-~~~~DgLILsgGP 569 (717)
T TIGR01815 515 EGRRILLVDHED-S----FVHTLANYLRQ-TGASVTTLRHSHA------------------EAAFD-ERRPDLVVLSPGP 569 (717)
T ss_pred CCCEEEEEECCC-h----hHHHHHHHHHH-CCCeEEEEECCCC------------------hhhhh-hcCCCEEEEcCCC
Confidence 357899997543 2 24678889976 4666654321100 00111 2458999999999
Q ss_pred hHH-----HHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GTV-----LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTl-----L~aar~~~~~~~PILGIN~G~ 320 (533)
|+. ....+.+....+|||||-+|.
T Consensus 570 Gsp~d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 570 GRPADFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred CCchhcccHHHHHHHHHCCCCEEEECHHH
Confidence 885 333444345679999999996
No 124
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=70.77 E-value=11 Score=40.02 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=39.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+.+.-. ...+..++...|.+ ....+| ..+.. ++....+... .....+...++|+||.||| |+
T Consensus 24 ~r~lvVtd~~~~-~~g~~~~v~~~L~~-~~~~~~--~~v~~-----~pt~~~v~~~--~~~~~~~~~~~D~IIaiGG-GS 91 (355)
T TIGR03405 24 RRVVVVTFPEAR-ALGLARRLEALLGG-RLAALI--DDVAP-----NPDVAQLDGL--YARLWGDEGACDLVIALGG-GS 91 (355)
T ss_pred CeEEEEECcchh-hcchHHHHHHHhcc-CcEEEe--CCCCC-----CcCHHHHHHH--HHHHHhcCCCCCEEEEeCC-cc
Confidence 789999965421 12456777777753 233332 11110 0111101000 0111111234999999999 99
Q ss_pred HHHHHHhc
Q 009486 299 VLWAASIF 306 (533)
Q Consensus 299 lL~aar~~ 306 (533)
++-+++.+
T Consensus 92 viD~aK~i 99 (355)
T TIGR03405 92 VIDTAKVL 99 (355)
T ss_pred HHHHHHHH
Confidence 99988764
No 125
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=70.70 E-value=12 Score=36.54 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=46.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 300 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 300 (533)
|+||-+.+. .+..|++||++ .++++.+-+.... ...++. ..++|.||..||=|-..
T Consensus 2 il~idn~ds-----ft~nl~~~l~~-~g~~v~v~~~~~~----------------~~~~~~--~~~~d~iIlsgGP~~p~ 57 (195)
T PRK07649 2 ILMIDNYDS-----FTFNLVQFLGE-LGQELVVKRNDEV----------------TISDIE--NMKPDFLMISPGPCSPN 57 (195)
T ss_pred EEEEeCCCc-----cHHHHHHHHHH-CCCcEEEEeCCCC----------------CHHHHh--hCCCCEEEECCCCCChH
Confidence 566665443 25679999976 5677766432100 001111 13589999999998753
Q ss_pred ------HHHHhcCCCCCcEEEEeCCC
Q 009486 301 ------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 301 ------~aar~~~~~~~PILGIN~G~ 320 (533)
...+.+. ..+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~~-~~~PvLGIClG~ 82 (195)
T PRK07649 58 EAGISMEVIRYFA-GKIPIFGVCLGH 82 (195)
T ss_pred hCCCchHHHHHhc-CCCCEEEEcHHH
Confidence 3334433 468999999986
No 126
>PRK09065 glutamine amidotransferase; Provisional
Probab=70.49 E-value=7 Score=39.22 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=26.1
Q ss_pred CCccEEEEEeCchHH----------HHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTV----------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTl----------L~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||+.||=++. +...+.+....+|||||-+|.
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 458999999997652 233344444679999999997
No 127
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=70.09 E-value=3.5 Score=50.80 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCccEEEEEeCchHHHHHHHhcCC----------CCCcEEEEeC-------C-----CCccCccCC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKG----------PVPPIVPFSL-------G-----SLGFMTPFH 328 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~----------~~~PILGIN~-------G-----~LGFLt~~~ 328 (533)
.++|.+|+||||||+-.|+.+... .++||+||.. | ++||-|...
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 578999999999999998875432 4799999874 2 577766543
No 128
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=69.98 E-value=13 Score=40.48 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=43.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. ++..+.+. .-... ...++|+||.||| |
T Consensus 24 ~~vlivt~~~~~~-~g~~~~v~~~L~~-~gi~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 90 (414)
T cd08190 24 RRVCLVTDPNLAQ-LPPVKVVLDSLEA-AGINFEVYDDVRV-----EPTDESFK-----DAIAFAKKGQFDAFVAVGG-G 90 (414)
T ss_pred CeEEEEECcchhh-cchHHHHHHHHHH-cCCcEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 6899998765322 2356889999965 5666554221111 01111010 00111 1356899999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
.++-+++.+
T Consensus 91 SviD~AKai 99 (414)
T cd08190 91 SVIDTAKAA 99 (414)
T ss_pred cHHHHHHHH
Confidence 999988765
No 129
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=69.14 E-value=4 Score=47.87 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC---cc-----------ccccc--ccchH
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS---YF-----------SFVQT--WKDEK 278 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~---~~-----------~~i~~--~~~~~ 278 (533)
.++++|+|++-- ..|-.-...+-++++... .+.+||--.+-...+...+. .+ +.+.+ ..+.+
T Consensus 387 ~~~~rIaIltsGG~apGmNaair~vv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 465 (745)
T TIGR02478 387 ASRLRIAIIHVGAPAGGMNAATRSAVRYAIA-RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTNRELPGK 465 (745)
T ss_pred CCceEEEEEecCCCchhHHHHHHHHHHHHHh-CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccCCCCchh
Confidence 456899999875 445555566778888764 56777653332222221100 00 01111 11011
Q ss_pred HHhhh-----CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEeC-------C---CCccCccCCcchHHHHHH
Q 009486 279 EILLL-----HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLD 337 (533)
Q Consensus 279 ~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~------~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~ 337 (533)
.+..+ ..++|.+|++|||||+-.+..+.. ...+||+||.. | ++||-|..+ .+-++++
T Consensus 466 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~--~~~~~id 543 (745)
T TIGR02478 466 DLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN--EITEYCD 543 (745)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH--HHHHHHH
Confidence 11111 246899999999999987776543 25699999874 2 788877653 3455566
Q ss_pred HHH
Q 009486 338 SVL 340 (533)
Q Consensus 338 ~ll 340 (533)
++.
T Consensus 544 ~i~ 546 (745)
T TIGR02478 544 NIK 546 (745)
T ss_pred HHH
Confidence 554
No 130
>PLN02834 3-dehydroquinate synthase
Probab=68.67 E-value=14 Score=40.67 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=49.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+.+.-... +..++.+.|.+ .|+++.+...+... .........+... .....+. .+..|+||.|||
T Consensus 100 g~rvlIVtD~~v~~~--~~~~v~~~L~~-~g~~~~v~~~v~~~-gE~~ksl~~v~~~--~~~l~~~~~dr~~~VIAiGG- 172 (433)
T PLN02834 100 GKRVLVVTNETVAPL--YLEKVVEALTA-KGPELTVESVILPD-GEKYKDMETLMKV--FDKALESRLDRRCTFVALGG- 172 (433)
T ss_pred CCEEEEEECccHHHH--HHHHHHHHHHh-cCCceEEEEEEecC-CcCCCCHHHHHHH--HHHHHhcCCCcCcEEEEECC-
Confidence 478999996554433 66778888865 45543321110000 0000000000000 0001111 123459999999
Q ss_pred hHHHHHHHhcC---CCCCcEEEEeCC
Q 009486 297 GTVLWAASIFK---GPVPPIVPFSLG 319 (533)
Q Consensus 297 GTlL~aar~~~---~~~~PILGIN~G 319 (533)
|+++-+++.+. ..++|++-|.+.
T Consensus 173 Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 173 GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 99999998642 457888777763
No 131
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=68.28 E-value=15 Score=35.32 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch--------------
Q 009486 232 VQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG-------------- 297 (533)
Q Consensus 232 ~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG-------------- 297 (533)
...+...++++|+.. |..+.+-+.... ...+......+|.||.-||-+
T Consensus 17 ~~~~~~~~~~~l~~~-G~~~~iv~~~~~-----------------~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~ 78 (189)
T cd01745 17 RDYLNQYYVDAVRKA-GGLPVLLPPVDD-----------------EEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPEL 78 (189)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEeCCCCC-----------------hHHHHHHHhhCCEEEECCCCCCChhhcCCCCCccc
Confidence 344567888888764 544433222110 011222345689999999942
Q ss_pred ---------HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 ---------TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 ---------TlL~aar~~~~~~~PILGIN~G~ 320 (533)
......+.+...+.||+||-.|.
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 79 GPIDPERDAFELALLRAALERGKPILGICRGM 110 (189)
T ss_pred CCCChhHHHHHHHHHHHHHHCCCCEEEEcchH
Confidence 22344455545678999999885
No 132
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=67.44 E-value=4.6 Score=47.47 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=70.5
Q ss_pred cCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC---cc-----------cccccc--cch
Q 009486 215 ESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS---YF-----------SFVQTW--KDE 277 (533)
Q Consensus 215 ~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~---~~-----------~~i~~~--~~~ 277 (533)
..++.+|+|+.-- +.|-.-...+-++++... .|.+||--.+-...+...+. .+ +.+.+- .+.
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~a~~-~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~ 464 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA-HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPK 464 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcH
Confidence 3445799999875 445555556778888764 57777653332222221100 00 011110 001
Q ss_pred HHHhhh-----CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEeC-------C---CCccCccCCcchHHHHH
Q 009486 278 KEILLL-----HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYL 336 (533)
Q Consensus 278 ~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~------~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L 336 (533)
+.+... ..++|.+|++|||||+-.+.++.. ...+|++||.. | ++||=|.++ .+-+++
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~i 542 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYC 542 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHH
Confidence 111111 356999999999999987766543 35799999874 3 688876543 445556
Q ss_pred HHHH
Q 009486 337 DSVL 340 (533)
Q Consensus 337 ~~ll 340 (533)
+++.
T Consensus 543 d~i~ 546 (762)
T cd00764 543 DRIK 546 (762)
T ss_pred HHHH
Confidence 6664
No 133
>PRK13566 anthranilate synthase; Provisional
Probab=67.38 E-value=17 Score=42.65 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=50.9
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
..++|+||=.-+ . ....+.+||++ .|.+|.+-+.... ...+. ..++|.||..||-
T Consensus 525 ~g~~IlvID~~d-s----f~~~l~~~Lr~-~G~~v~vv~~~~~-----------------~~~~~--~~~~DgVVLsgGp 579 (720)
T PRK13566 525 EGKRVLLVDHED-S----FVHTLANYFRQ-TGAEVTTVRYGFA-----------------EEMLD--RVNPDLVVLSPGP 579 (720)
T ss_pred CCCEEEEEECCC-c----hHHHHHHHHHH-CCCEEEEEECCCC-----------------hhHhh--hcCCCEEEECCCC
Confidence 467898887753 2 24678899976 5777755322110 01111 1368999999998
Q ss_pred hH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
|+ +....+.+...++|||||-+|.
T Consensus 580 gsp~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 580 GRPSDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred CChhhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 75 4445555555689999999996
No 134
>PRK07567 glutamine amidotransferase; Provisional
Probab=66.77 E-value=7.4 Score=39.29 Aligned_cols=36 Identities=14% Similarity=-0.040 Sum_probs=25.0
Q ss_pred CCccEEEEEeCchHH------------------HHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTV------------------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTl------------------L~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||+.||-+.. ..+.+.+....+|||||-+|.
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 458999999996432 112233335679999999997
No 135
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=66.19 E-value=16 Score=41.41 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=50.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCe----EEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKL----NIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi----~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL 293 (533)
.-+|+||.|...- ...-..+.+.|.. .++ .|.+..-.+..+.. ... +...++|.||.-
T Consensus 289 ~v~IalVGKY~~~--~daY~SI~eAL~~-ag~~~~~~V~~~~i~se~i~~--------------~~~-~~L~~~dGIiLp 350 (525)
T TIGR00337 289 EVTIGIVGKYVEL--KDSYLSVIEALKH-AGAKLDTKVNIKWIDSEDLEE--------------EGA-EFLKGVDGILVP 350 (525)
T ss_pred CcEEEEEeCCcCC--HHHHHHHHHHHHh-CccccCCEEEEEEecHHHhhh--------------hhh-hhhcCCCEEEeC
Confidence 4689999997542 2233678888864 343 33332211111100 000 124568999999
Q ss_pred eCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 294 GGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 294 GGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
||=|. .+.+++.+...++|+|||-+|.
T Consensus 351 GG~G~~~~~g~i~ai~~a~e~~iP~LGIClG~ 382 (525)
T TIGR00337 351 GGFGERGVEGKILAIKYARENNIPFLGICLGM 382 (525)
T ss_pred CCCCChhhcChHHHHHHHHHcCCCEEEEcHHH
Confidence 99754 3456666666789999999874
No 136
>PRK08250 glutamine amidotransferase; Provisional
Probab=65.54 E-value=12 Score=37.62 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=45.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+||.+..-+.. ..+..|+.+ .|+++.+-. +.. .+ .+.....++|.+|+.||=.+.
T Consensus 2 ~i~vi~h~~~e~~----g~~~~~~~~-~g~~~~~~~-~~~---g~--------------~~p~~~~~~d~vii~GGp~~~ 58 (235)
T PRK08250 2 RVHFIIHESFEAP----GAYLKWAEN-RGYDISYSR-VYA---GE--------------ALPENADGFDLLIVMGGPQSP 58 (235)
T ss_pred eEEEEecCCCCCc----hHHHHHHHH-CCCeEEEEE-ccC---CC--------------CCCCCccccCEEEECCCCCCh
Confidence 5778876554443 456777765 566665421 110 00 000113468999999994331
Q ss_pred ---------------HHHHHhcCCCCCcEEEEeCCC
Q 009486 300 ---------------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 300 ---------------L~aar~~~~~~~PILGIN~G~ 320 (533)
....+.+...++||+||-+|.
T Consensus 59 ~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 59 RTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred hhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 223344445689999999886
No 137
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=65.14 E-value=10 Score=43.13 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=47.5
Q ss_pred EEEEeCchHHHHHHHhcC----CCCCcE--EEEeCC-----CCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEe
Q 009486 290 VVTLGGDGTVLWAASIFK----GPVPPI--VPFSLG-----SLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVI 357 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~----~~~~PI--LGIN~G-----~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~ 357 (533)
|++-|||||+=++.+.+. ...||| |..-.| +||.=-.+.-|-+...|..+..|...-..|.+|.++-.
T Consensus 420 ILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpN 498 (1004)
T KOG0782|consen 420 ILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPN 498 (1004)
T ss_pred EEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCC
Confidence 778899999766555443 234554 444444 35554456667788899999999999889999988643
No 138
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=64.89 E-value=21 Score=36.30 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=47.6
Q ss_pred EEEEEEcCCC---hhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 220 TVVILTKPNS---NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K~~~---~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.|||...... .....+....++.+...+++.|.+...... +....+....+|-+|..||.
T Consensus 9 ~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~-----------------~~~~~~~l~~~DGlil~GG~ 71 (254)
T PRK11366 9 VIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAE-----------------PSLLEQLLPKLDGIYLPGSP 71 (254)
T ss_pred EEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCC-----------------HHHHHHHHHhCCEEEeCCCC
Confidence 4788753211 112224455667776667788877532110 11122334568999999983
Q ss_pred hHH----------------------HHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GTV----------------------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTl----------------------L~aar~~~~~~~PILGIN~G~ 320 (533)
..+ +...+.+....+|||||-.|.
T Consensus 72 ~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 72 SNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred CCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 222 334444445678999999986
No 139
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=63.96 E-value=38 Score=30.89 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=56.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++|+|++-++.+.-.+....++.+|++..|++|.++.-....+...+ ...| .......+|.||+|=--|+
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g-----~~~W-----~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQG-----PPRW-----MERQIREADKVLIVCSPGY 70 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCC-----HHHH-----HHHHHhcCCEEEEEeccch
Confidence 57999999999999999999999998755999998754332211110 1123 2233567999999999998
Q ss_pred HHHHHHhcC
Q 009486 299 VLWAASIFK 307 (533)
Q Consensus 299 lL~aar~~~ 307 (533)
.-.......
T Consensus 71 ~~~~~~~~~ 79 (150)
T PF08357_consen 71 KERYDKKAD 79 (150)
T ss_pred hHHHHHhhc
Confidence 777666654
No 140
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=63.29 E-value=52 Score=35.20 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=50.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE--EEEccchhHHhhhcCCcccccccccchHHHhhhCCCcc---EEEEE
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLN--IYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVD---LVVTL 293 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~--V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~D---lVIvL 293 (533)
++++||+..+-... +..++.+.|++ .+++ +++-+... .++.++.+... .... ...++| +||.+
T Consensus 24 ~rvlvVtd~~v~~~--~~~~l~~~L~~-~g~~~~~~~~~~~e-----~~k~~~~v~~~--~~~~--~~~~~dr~~~IIAv 91 (355)
T cd08197 24 DKYLLVTDSNVEDL--YGHRLLEYLRE-AGAPVELLSVPSGE-----EHKTLSTLSDL--VERA--LALGATRRSVIVAL 91 (355)
T ss_pred CeEEEEECccHHHH--HHHHHHHHHHh-cCCceEEEEeCCCC-----CCCCHHHHHHH--HHHH--HHcCCCCCcEEEEE
Confidence 78999987654332 56788888865 4443 33211110 00111101000 0001 123455 99999
Q ss_pred eCchHHHHHHHhcC---CCCCcEEEEeCC
Q 009486 294 GGDGTVLWAASIFK---GPVPPIVPFSLG 319 (533)
Q Consensus 294 GGDGTlL~aar~~~---~~~~PILGIN~G 319 (533)
|| |+++-+++.++ ..++|++-|.+.
T Consensus 92 GG-Gsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 92 GG-GVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred CC-cHHHHHHHHHHHHhccCCCEEEecCc
Confidence 99 99999998764 247899888873
No 141
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=62.26 E-value=20 Score=38.12 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=18.2
Q ss_pred CccEEEEEeCchHHHHHHHhc
Q 009486 286 KVDLVVTLGGDGTVLWAASIF 306 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL~aar~~ 306 (533)
++|+||.+|| |..+-+++.+
T Consensus 81 ~~D~IIaiGG-GS~iD~AKai 100 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAV 100 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHH
Confidence 7899999999 9999998875
No 142
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=62.22 E-value=82 Score=29.65 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=54.5
Q ss_pred EEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 009486 220 TVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 297 (533)
Q Consensus 220 ~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDG 297 (533)
+|+++... ..+-...+...+.+++.+ .|+++.+.+.-... ... ...+. ....++|.+|+.+.+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~~l~~~~~~~~~--------~~~-----~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGYQVLLANSQNDA--------EKQ-----LSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCH--------HHH-----HHHHHHHHHcCCCEEEEecCCC
Confidence 36777754 355666677777778765 67777654321100 000 00111 1234799999999998
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 TlL~aar~~~~~~~PILGIN~G~ 320 (533)
+.+..+..+....+|++.++...
T Consensus 67 ~~~~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 67 TAPTIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred cchhHHHHhhhcCCCEEEeccCC
Confidence 87766777777889999998764
No 143
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=61.94 E-value=15 Score=34.68 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCCccEEEEEeCc------hHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGD------GTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGD------GTlL~aar~~~~~~~PILGIN~G~ 320 (533)
..++|.||+.||= +..+.+.+.+....+|||||-+|.
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 5789999999994 455566666666789999999886
No 144
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=61.59 E-value=17 Score=34.61 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCccEEEEEeCchH------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGT------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGT------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||..||-|. .+...+.+.....||+||-+|.
T Consensus 38 ~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 38 LDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred cCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 36899999999664 3445555555679999999985
No 145
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.87 E-value=33 Score=37.07 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCEEEEEEcCCChhH-HHHHHHHHHHHHhcCC--eEEEEccchhHHhhhcCCcccccccccc-hHHHh-hhCCCccEEE
Q 009486 217 PPQTVVILTKPNSNSV-QILCAQMVRWLREQKK--LNIYVEPRVRAELLTESSYFSFVQTWKD-EKEIL-LLHTKVDLVV 291 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~-~~~~~el~~~L~e~~g--i~V~ve~~~a~~l~~~~~~~~~i~~~~~-~~~~~-~~~~~~DlVI 291 (533)
+.++++||+.+.-... ..+...+...|.+ .+ +.++...-+.. ..+ ...+.+..... ...+. .-....|+||
T Consensus 29 ~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~-~g~~~~v~~~~~~~~--~ge-~~k~~~~~v~~i~~~l~~~~~~r~~~II 104 (369)
T cd08198 29 ARPKVLVVIDSGVAQANPQLASDIQAYAAA-HADALRLVAPPHIVP--GGE-ACKNDPDLVEALHAAINRHGIDRHSYVI 104 (369)
T ss_pred CCCeEEEEECcchHHhhhhHHHHHHHHHHh-cCCceeeeeeeEecC--CCc-cCCChHHHHHHHHHHHHHcCCCcCcEEE
Confidence 3478999998655443 2456778888864 35 33332111000 000 00000000000 00011 1123446999
Q ss_pred EEeCchHHHHHHHhcC---CCCCcEEEEeCC
Q 009486 292 TLGGDGTVLWAASIFK---GPVPPIVPFSLG 319 (533)
Q Consensus 292 vLGGDGTlL~aar~~~---~~~~PILGIN~G 319 (533)
.||| |.++-++..++ ..++|++-|.+=
T Consensus 105 alGG-G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 105 AIGG-GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred EECC-hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 9999 99999987764 457888887753
No 146
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=60.82 E-value=27 Score=35.97 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=25.5
Q ss_pred HhhhCCCccEEEEEeCchHH-----HHHH-------HhcC--CCCCcEEEEeCCC
Q 009486 280 ILLLHTKVDLVVTLGGDGTV-----LWAA-------SIFK--GPVPPIVPFSLGS 320 (533)
Q Consensus 280 ~~~~~~~~DlVIvLGGDGTl-----L~aa-------r~~~--~~~~PILGIN~G~ 320 (533)
+.++...+|-||..||.-.+ +.++ .... +...||+|+-+|.
T Consensus 48 l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~ 102 (273)
T cd01747 48 YDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF 102 (273)
T ss_pred HHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHH
Confidence 44455678999999995222 2222 2211 2238999999885
No 147
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=60.56 E-value=6.9 Score=45.98 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=38.5
Q ss_pred CCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEeC-------C---CCccCccCCcchH
Q 009486 285 TKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL-------G---SLGFMTPFHSEHY 332 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~----------------------~~~~~PILGIN~-------G---~LGFLt~~~~ed~ 332 (533)
.++|.+|++|||||+-.|..+. .+..+||+||.- | ++||-|..+ .+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~--~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALH--RI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHH--HH
Confidence 5799999999999998776422 134789999873 3 688877543 44
Q ss_pred HHHHHHHHc
Q 009486 333 KDYLDSVLR 341 (533)
Q Consensus 333 ~~~L~~ll~ 341 (533)
-++++.+..
T Consensus 171 ~~aid~i~~ 179 (745)
T TIGR02478 171 CEAIDAISS 179 (745)
T ss_pred HHHHHHHHh
Confidence 556666654
No 148
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=60.55 E-value=7.2 Score=48.16 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=27.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL 318 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~ 318 (533)
-++|.+|++|||||+-.|+++.. +..++|+||.-
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPK 233 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPK 233 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeE
Confidence 46899999999999988876543 35589999874
No 149
>PRK05380 pyrG CTP synthetase; Validated
Probab=60.47 E-value=28 Score=39.60 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=48.8
Q ss_pred CCEEEEEEcCC-ChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPN-SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~-~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.-+|+||.|.. -+++.....+.++..-.+.+..|-+.---+..+..+ ...+...++|-||.-||=
T Consensus 288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~--------------~~~~~L~~~DGIIlpGGf 353 (533)
T PRK05380 288 EVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEE--------------NVAELLKGVDGILVPGGF 353 (533)
T ss_pred ceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCc--------------chhhHhhcCCEEEecCCC
Confidence 46799999974 344444444444444322344443221101111000 011335678999999984
Q ss_pred h-----HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 297 G-----TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 G-----TlL~aar~~~~~~~PILGIN~G~ 320 (533)
| -.+.+++.+...++|+|||-+|-
T Consensus 354 G~~~~~g~i~~i~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 354 GERGIEGKILAIRYARENNIPFLGICLGM 382 (533)
T ss_pred CccccccHHHHHHHHHHCCCcEEEEchHH
Confidence 3 24456666656789999999874
No 150
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=60.31 E-value=74 Score=34.57 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=69.0
Q ss_pred eecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCccc-ccccccchHHHhhhCCCccEEE
Q 009486 213 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFS-FVQTWKDEKEILLLHTKVDLVV 291 (533)
Q Consensus 213 ~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~DlVI 291 (533)
.|...-+.+..++=..-....++.+.+++-+.+ -+..|++...-++. ...+...+ .+..|. +...+...+|+||
T Consensus 231 ~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~-l~~~vi~~~~~~~~-~~~~~p~n~~v~~~~---p~~~~l~~ad~vI 305 (406)
T COG1819 231 YWIPADRPIVYVSLGTVGNAVELLAIVLEALAD-LDVRVIVSLGGARD-TLVNVPDNVIVADYV---PQLELLPRADAVI 305 (406)
T ss_pred chhcCCCCeEEEEcCCcccHHHHHHHHHHHHhc-CCcEEEEecccccc-ccccCCCceEEecCC---CHHHHhhhcCEEE
Confidence 443333445555433332225666777777765 45556554322111 00110111 122222 2345678999999
Q ss_pred EEeCchHHHHHHHhcCCCCCcEEEEeCCC-------------CccCc---cCCcchHHHHHHHHHcCCc
Q 009486 292 TLGGDGTVLWAASIFKGPVPPIVPFSLGS-------------LGFMT---PFHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 292 vLGGDGTlL~aar~~~~~~~PILGIN~G~-------------LGFLt---~~~~ed~~~~L~~ll~G~y 344 (533)
+-||=||+..+.+. ++|++.+-.+. .|... ..+++.+.++|..++....
T Consensus 306 ~hGG~gtt~eaL~~----gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~ 370 (406)
T COG1819 306 HHGGAGTTSEALYA----GVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDS 370 (406)
T ss_pred ecCCcchHHHHHHc----CCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHH
Confidence 99999999998864 67988876542 34322 2456667777777776543
No 151
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=59.77 E-value=20 Score=36.15 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=25.8
Q ss_pred CCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
..++|.||.-||-|+ .+.+.+.....++|+|||-+|.
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHH
Confidence 456899999998532 2234444445689999999884
No 152
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=59.41 E-value=81 Score=30.94 Aligned_cols=122 Identities=12% Similarity=0.106 Sum_probs=67.7
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccc--hhHHhhh-----cCCcccccccccchHHHhhhCCCcc
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPR--VRAELLT-----ESSYFSFVQTWKDEKEILLLHTKVD 288 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~--~a~~l~~-----~~~~~~~i~~~~~~~~~~~~~~~~D 288 (533)
..+..|+.+.+.....-.+.+.++++.+.+.+++.+.+--. ....+.. ......+.. +.+..++.++...+|
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~d 296 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLG-RVPKEELPELLAAAD 296 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeC-CCChHHHHHHHHhhC
Confidence 34455777777655544555666666665433566655211 1111111 011111222 223345566778899
Q ss_pred EEEEEeCchHH---------HHHHHhcCCCCCcEEEEeCC---------CCccCccC-CcchHHHHHHHHHcC
Q 009486 289 LVVTLGGDGTV---------LWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 289 lVIvLGGDGTl---------L~aar~~~~~~~PILGIN~G---------~LGFLt~~-~~ed~~~~L~~ll~G 342 (533)
++|.....+++ +-|+. .+.||++-+.| ..|++.+. +++++.+.|..++..
T Consensus 297 i~i~~~~~~~~~~~~~p~~~~Ea~~----~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 297 VGLVPLKPGPAFEGVSPSKLFEYMA----AGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDD 365 (394)
T ss_pred eeEEeccCcccccccCchHHHHHHH----CCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhC
Confidence 99987665543 44332 46799887764 35776664 677888888888743
No 153
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=59.27 E-value=5 Score=37.40 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccc
Q 009486 84 EAAEWKRRFELERARNLRLENKEQSFKE 111 (533)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (533)
|--|||.|||.-+--|-+||..+..|.+
T Consensus 2 e~nEWktRYEtQ~E~N~QLekqi~~l~~ 29 (129)
T PF15372_consen 2 EGNEWKTRYETQLELNDQLEKQIIILRE 29 (129)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999999999997743
No 154
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=58.03 E-value=29 Score=33.64 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL----------~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-||-++.. ...+.+...+.||+||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 4689999999988763 22333334678999999885
No 155
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=57.84 E-value=29 Score=41.34 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.7
Q ss_pred CCccEEEEEeCchHHHHHHHhc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIF 306 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~ 306 (533)
.++|+||.||| |.++-+++.+
T Consensus 538 ~~~D~IIaiGG-GSviD~AK~i 558 (862)
T PRK13805 538 FKPDTIIALGG-GSPMDAAKIM 558 (862)
T ss_pred cCCCEEEEeCC-chHHHHHHHH
Confidence 57899999999 9999998876
No 156
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=57.62 E-value=40 Score=34.00 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=51.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
+.+.|++........ +++++|++.++..+.+ ...... .. ..... +..+. ...+.++...+|+||+-||
T Consensus 191 ~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~g~~~~~-~~--~~ni~-~~~~~-~~~~~~~m~~ad~vIs~~G 259 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG------DLIEALKALPDYQFIVFGPNAAD-PR--PGNIH-VRPFS-TPDFAELMAAADLVISKGG 259 (318)
T ss_pred CCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEEcCCccc-cc--CCCEE-EeecC-hHHHHHHHHhCCEEEECCC
Confidence 456688887776665 5566665544333333 222111 11 11111 11111 1345566788999999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeC
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~ 318 (533)
-+|+.-++.. ++|++-|-.
T Consensus 260 ~~t~~Ea~~~----g~P~l~ip~ 278 (318)
T PF13528_consen 260 YTTISEALAL----GKPALVIPR 278 (318)
T ss_pred HHHHHHHHHc----CCCEEEEeC
Confidence 9999998864 578887765
No 157
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=56.38 E-value=41 Score=32.77 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=54.0
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHH-hhhCCCccEEEEEeCch
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI-LLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~DlVIvLGGDG 297 (533)
+||+|.+ ..++-...+.+.+.+.+++ .|+++.+...-... ..+ ..-+ ..+..++|-+|+.+.+.
T Consensus 1 ~~g~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~l~~~~vdgiIi~~~~~ 66 (273)
T cd06309 1 TVGFSQVGAESPWRTAETKSIKDAAEK-RGFDLKFADAQQKQ-ENQ------------ISAIRSFIAQGVDVIILAPVVE 66 (273)
T ss_pred CeeeccCCCCCHHHHHHHHHHHHHHHh-cCCEEEEeCCCCCH-HHH------------HHHHHHHHHcCCCEEEEcCCcc
Confidence 3666665 7778778888999999976 68888774321100 000 0001 11235799999988776
Q ss_pred HH-HHHHHhcCCCCCcEEEEeCC
Q 009486 298 TV-LWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 298 Tl-L~aar~~~~~~~PILGIN~G 319 (533)
.. -...+.+...++|++.+|..
T Consensus 67 ~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 67 TGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred ccchHHHHHHHHCCCCEEEEecC
Confidence 53 23345555668999999964
No 158
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=55.65 E-value=39 Score=32.71 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCccEEEEEeCchHHHH----------HHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVLW----------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~----------aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-||-++... ..+.+...+.||+||-.|.
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH
Confidence 46899999999887632 2344556689999999885
No 159
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=55.60 E-value=27 Score=37.31 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=41.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDG 297 (533)
++++||+-+.-. ......++.+.|.+ .++++.+-..+.. ++....+. ..... ...++|+||.||| |
T Consensus 29 ~~~livt~~~~~-~~~~~~~v~~~L~~-~~~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG-G 95 (377)
T cd08188 29 KKVLLVSDPGVI-KAGWVDRVIESLEE-AGLEYVVFSDVSP-----NPRDEEVM-----AGAELYLENGCDVIIAVGG-G 95 (377)
T ss_pred CeEEEEeCcchh-hCccHHHHHHHHHH-cCCeEEEeCCCCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 689999864321 11246778888865 4565543222111 01110010 00111 1357899999999 9
Q ss_pred HHHHHHHhc
Q 009486 298 TVLWAASIF 306 (533)
Q Consensus 298 TlL~aar~~ 306 (533)
.++-+++.+
T Consensus 96 sviD~AK~i 104 (377)
T cd08188 96 SPIDCAKGI 104 (377)
T ss_pred hHHHHHHHH
Confidence 999999754
No 160
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.38 E-value=12 Score=39.57 Aligned_cols=36 Identities=33% Similarity=0.316 Sum_probs=27.4
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~ 318 (533)
++....+++|++|-|=|.+ ++..+...++||+||--
T Consensus 262 el~~~~~lvvTvGDDTT~v-agdIl~RfgipiiGItD 297 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEV-AGDILYRFGIPIIGITD 297 (367)
T ss_pred HhhccCceEEEEcCcchhH-HHHHHHhcCCcEEeccc
Confidence 4567789999999986655 55566678999999643
No 161
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=53.84 E-value=75 Score=36.91 Aligned_cols=68 Identities=25% Similarity=0.473 Sum_probs=46.4
Q ss_pred EEEEEeCchHHHHHHHhcCC-------CCCcEEEEeCCC-------CccCccCCcch--HHHHHHHHHcCCceEEEEeee
Q 009486 289 LVVTLGGDGTVLWAASIFKG-------PVPPIVPFSLGS-------LGFMTPFHSEH--YKDYLDSVLRGPISITLRNRL 352 (533)
Q Consensus 289 lVIvLGGDGTlL~aar~~~~-------~~~PILGIN~G~-------LGFLt~~~~ed--~~~~L~~ll~G~y~ie~R~rL 352 (533)
-|++-|||||+=++...+.. +.|||-=+-+|+ ||-=..++.++ +...|.++...+.....|.-+
T Consensus 326 riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v 405 (634)
T KOG1169|consen 326 RILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKV 405 (634)
T ss_pred eEEEecCCCcchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeE
Confidence 79999999998665543322 356765455553 34334455555 888999999988888888877
Q ss_pred eEEE
Q 009486 353 QCHV 356 (533)
Q Consensus 353 ~v~V 356 (533)
.+.-
T Consensus 406 ~v~~ 409 (634)
T KOG1169|consen 406 LVEP 409 (634)
T ss_pred Eeec
Confidence 7654
No 162
>PRK15138 aldehyde reductase; Provisional
Probab=53.74 E-value=30 Score=37.25 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=40.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-...-.......++.+.|. ++++.+-..+.. ++....+. .-.... ..++|+||.||| |
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~---~~~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 95 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFGGIEP-----NPTYETLM-----KAVKLVREEKITFLLAVGG-G 95 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc---CCeEEEECCccC-----CCCHHHHH-----HHHHHHHHcCCCEEEEeCC-h
Confidence 68999975433333344567777773 444433222110 11111010 000111 257999999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
..+-+++.+.
T Consensus 96 S~iD~AK~ia 105 (387)
T PRK15138 96 SVLDGTKFIA 105 (387)
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 163
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=53.42 E-value=22 Score=34.00 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=25.4
Q ss_pred ccEEEEEeCchHH-----HHHHHhcCCCCCcEEEEeCCC
Q 009486 287 VDLVVTLGGDGTV-----LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 287 ~DlVIvLGGDGTl-----L~aar~~~~~~~PILGIN~G~ 320 (533)
+|.||..||.+.. ....+.+....+|||||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 5699999998653 344555555689999999985
No 164
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=53.08 E-value=24 Score=33.42 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCccEEEEEeCchHH-----------HHHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGTV-----------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGTl-----------L~aar~~~~~~~PILGIN~G~ 320 (533)
...+|.||.-||-++. +...+.+.....|++||-.|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 4578999999997654 233344445678999999986
No 165
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=52.94 E-value=1.3e+02 Score=28.30 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=52.9
Q ss_pred EEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 221 VVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 221 VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
|+++... +.+-...+...+.+.+++ .++.+.+...-... .. .. ..-......++|.+|+.+.|.+-
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~--~~-----~~-----~~~~~~~~~~~d~iii~~~~~~~ 68 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAARE-AGYSVLLCNSDEDP--EK-----ER-----EALELLLSRRVDGIILAPSRLDD 68 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCCH--HH-----HH-----HHHHHHHHcCcCEEEEecCCcch
Confidence 5666543 567677777778888865 46666653221100 00 00 00001223579999999999988
Q ss_pred HHHHHhcCCCCCcEEEEeCC
Q 009486 300 LWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G 319 (533)
+. .+.+...++|++.++..
T Consensus 69 ~~-~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 69 EL-LEELAALGIPVVLVDRP 87 (264)
T ss_pred HH-HHHHHHcCCCEEEeccc
Confidence 77 66666778999999875
No 166
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=52.79 E-value=1.4e+02 Score=27.56 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=51.0
Q ss_pred EEEEEEcCC--ChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 220 TVVILTKPN--SNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 220 ~VlIV~K~~--~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
+||++.-.. .+........+...+.+. .++++.+...-...-. . ...+.. ...++|.||..+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPER-------A------LEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHH-------H------HHHHHHHHHcCCCEEEecCC
Confidence 356665433 555566666666666541 4666655332111000 0 001111 2346999999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCC
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGSL 321 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~L 321 (533)
+.+...+...+...++|++.++.+.-
T Consensus 68 ~~~~~~~~~~~~~~~ip~v~~~~~~~ 93 (269)
T cd01391 68 SSSALAVVELAAAAGIPVVSLDATAP 93 (269)
T ss_pred CHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 88776566666677899999987543
No 167
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.95 E-value=1.1e+02 Score=30.97 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=42.6
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-----------------CCCccCccC---CcchHHHHHHH
Q 009486 279 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-----------------GSLGFMTPF---HSEHYKDYLDS 338 (533)
Q Consensus 279 ~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-----------------G~LGFLt~~---~~ed~~~~L~~ 338 (533)
++.++...+|++|+-+|-+|++-+.. .++|++.+.. +..|++.+. +++++.++|..
T Consensus 245 ~~~~~l~~ad~~v~~sg~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ 320 (350)
T cd03785 245 DMAAAYAAADLVISRAGASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLE 320 (350)
T ss_pred hHHHHHHhcCEEEECCCHhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHH
Confidence 45567788999999888677777664 3678887643 234677664 57788888887
Q ss_pred HHcC
Q 009486 339 VLRG 342 (533)
Q Consensus 339 ll~G 342 (533)
+++.
T Consensus 321 ll~~ 324 (350)
T cd03785 321 LLSD 324 (350)
T ss_pred HhcC
Confidence 7753
No 168
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=50.63 E-value=42 Score=32.43 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCccEEEEEeCchHHHH----------HHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVLW----------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~----------aar~~~~~~~PILGIN~G~ 320 (533)
.++|.+|.-||.++... ..+.+...+.||+||-.|.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 46899999999998632 2233335678999999986
No 169
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=48.19 E-value=64 Score=34.98 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-CCCCcEEEEeC--CCCccCcc
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-GPVPPIVPFSL--GSLGFMTP 326 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-~~~~PILGIN~--G~LGFLt~ 326 (533)
.++|+||-+|| |+.+-+++.+. ..+.|++.|.+ =+-|+-++
T Consensus 83 ~~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 83 DGADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIASTDAITSP 126 (360)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCccccccccCC
Confidence 56899999999 99999999887 46889999876 35566554
No 170
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=47.37 E-value=1.1e+02 Score=30.39 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=48.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~-gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
+++|+||=+.++ .+..|++||.+.+ .+.|+....+.. ..++ ..++|.||.==|=
T Consensus 1 ~~~IL~IDNyDS-----FtyNLv~yl~~lg~~v~V~rnd~~~~------------------~~~~--~~~pd~iviSPGP 55 (191)
T COG0512 1 MMMILLIDNYDS-----FTYNLVQYLRELGAEVTVVRNDDISL------------------ELIE--ALKPDAIVISPGP 55 (191)
T ss_pred CceEEEEECccc-----hHHHHHHHHHHcCCceEEEECCccCH------------------HHHh--hcCCCEEEEcCCC
Confidence 457888887664 3578888987632 244444331111 0111 2346777766665
Q ss_pred hH------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GT------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GT------lL~aar~~~~~~~PILGIN~G~ 320 (533)
|| .+.+.+.+ ...+|||||-+|+
T Consensus 56 G~P~d~G~~~~~i~~~-~~~~PiLGVCLGH 84 (191)
T COG0512 56 GTPKDAGISLELIRRF-AGRIPILGVCLGH 84 (191)
T ss_pred CChHHcchHHHHHHHh-cCCCCEEEECccH
Confidence 55 77778888 4568999999997
No 171
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=47.37 E-value=48 Score=37.11 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred hCCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 283 LHTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 283 ~~~~~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
+...+|-|++=||=|. ++.|+++.....+|.|||-+|-
T Consensus 360 ~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGm 402 (585)
T KOG2387|consen 360 KLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGM 402 (585)
T ss_pred HhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhh
Confidence 4567999999998764 6778888888899999999984
No 172
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.25 E-value=89 Score=30.76 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=64.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccch--hHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRV--RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~--a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
+..++.+.+.....-.+.+.++++.|.+...+.+.+-... ...+........+.. +.+..++..+...+|++|.-..
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~d~~l~~s~ 275 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLG-FLDGEELAAAYASADVFVFPSR 275 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEe-ccCHHHHHHHHHhCCEEEECcc
Confidence 4567777876554445556666666654234555443211 111111111111111 1223456667788999987665
Q ss_pred c----hHHHHHHHhcCCCCCcEEEEeCC---------CCccCcc-CCcchHHHHHHHHHcC
Q 009486 296 D----GTVLWAASIFKGPVPPIVPFSLG---------SLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 296 D----GTlL~aar~~~~~~~PILGIN~G---------~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
. .|+|-|.. .++||++-+.| ..|++.+ -+.+++.+.|..++..
T Consensus 276 ~e~~~~~~lEa~a----~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (364)
T cd03814 276 TETFGLVVLEAMA----SGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLAD 332 (364)
T ss_pred cccCCcHHHHHHH----cCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcC
Confidence 4 34555443 46799987765 4566554 3345577777777653
No 173
>PF08788 NHR2: NHR2 domain like; InterPro: IPR014896 Transcriptional activation and repression are required for control of cell proliferation and differentiation during embryonic development and homeostasis in the adult organism. Perturbations of these processes can lead to the development of cancer []. The Eight-Twenty-One (ETO) gene product is able to form complexes with corepressors and deacetylases, such as nuclear receptor corepressor (N-CoR), which repress transcription when recruited by transcription factors []. The ETO gene derives its name from its association with many cases of acute myelogenous leukaemia (AML), in which a reciprocal translocation, t(8;21), brings together a large portion of the ETO gene from chromosome eight and part of the AML1 gene from chromosome 21. The human ETO gene family currently comprises three major subfamilies: ETO/myeloid transforming gene on chromosome 8 (MTG8); myeloid transforming gene related protein-1 (MTGR1) and myeloid transforming gene on chromosome 16 (MTG16). ETO proteins are composed of four evolutionarily conserved domains termed nervy homology regions (NHR) 1-4. NHR1 is thought to stabilise the formation of high molecular weight complexes, but is not directly responsible for repressor activity. NHR2 and its flanking sequence comprise the core repressor domain, which mediates 50% of the wild type repressor activity. Furthermore, there is evidence that the amphipathic helical structure of NHR2 promotes the formation of ETO/AML1 homodimers []. NHR3 and NHR4 have been shown to act in concert to bind N-CoR. NHR4 contains two zinc finger motifs, which are thought to play a role in protein interactions rather than DNA binding []. This entry represents the NHR2 (Nervy homology 2) domain found in ETO proteins. It mediates oligomerisation and protein-protein interactions, forming an alpha-helical tetramer []. ; PDB: 1WQ6_A.
Probab=47.13 E-value=38 Score=28.07 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhHhHH---HHHHHHHHHHH
Q 009486 63 ALRTVAKALRRAAEGKAAAQ---AEAAEWKRRFE 93 (533)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 93 (533)
-|--|.|+.|.++.-.--.| .|-.+|+|||-
T Consensus 28 I~~MVeKTrRsl~vLrR~qeaDREeln~W~Rr~~ 61 (67)
T PF08788_consen 28 IMDMVEKTRRSLAVLRRCQEADREELNYWIRRCS 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 46678999998888755555 68889999984
No 174
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=47.11 E-value=24 Score=38.02 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=44.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
.+|+++=- .-. ..++++|.+ .|+.+.+-+.... ..++.. ..+|.||.-||-|.
T Consensus 174 ~~i~viD~-G~k------~ni~~~L~~-~G~~v~vvp~~~~-----------------~~~i~~--~~pDGIiLSgGPgd 226 (358)
T TIGR01368 174 KRVVVIDF-GVK------QNILRRLVK-RGCEVTVVPYDTD-----------------AEEIKK--YNPDGIFLSNGPGD 226 (358)
T ss_pred cEEEEEeC-CcH------HHHHHHHHH-CCCEEEEEcCCCC-----------------HHHHHh--hCCCEEEECCCCCC
Confidence 36777643 211 358899976 4677665432110 111111 24699999999655
Q ss_pred H------HHHHHhcCCCCCcEEEEeCCC
Q 009486 299 V------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 299 l------L~aar~~~~~~~PILGIN~G~ 320 (533)
. +..++.+.. ..|||||-+|.
T Consensus 227 p~~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 227 PAAVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 3 445555555 78999999986
No 175
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=47.05 E-value=49 Score=31.88 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=46.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH-
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV- 299 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl- 299 (533)
|+||-+.++= +..|+++|++ .|.++.+-+.... + ..++. ..++|.||.-||=|+.
T Consensus 2 il~idn~Dsf-----t~nl~~~l~~-~g~~v~v~~~~~~---------~-------~~~~~--~~~~d~iils~GPg~p~ 57 (187)
T PRK08007 2 ILLIDNYDSF-----TWNLYQYFCE-LGADVLVKRNDAL---------T-------LADID--ALKPQKIVISPGPCTPD 57 (187)
T ss_pred EEEEECCCcc-----HHHHHHHHHH-CCCcEEEEeCCCC---------C-------HHHHH--hcCCCEEEEcCCCCChH
Confidence 6677765542 5678999976 4666665332100 0 11111 1368999999997654
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 009486 300 -----LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 300 -----L~aar~~~~~~~PILGIN~G~ 320 (533)
+...+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~~~~~-~~~~PiLGIClG~ 82 (187)
T PRK08007 58 EAGISLDVIRHY-AGRLPILGVCLGH 82 (187)
T ss_pred HCCccHHHHHHh-cCCCCEEEECHHH
Confidence 3344444 3578999999996
No 176
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=46.72 E-value=46 Score=36.28 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=45.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++|+||=.-.+ ..|++||.+ .|+++.+-+.... .+++. ..++|.||.-||-|.
T Consensus 193 ~~I~viD~g~k-------~ni~~~L~~-~G~~v~vvp~~~~-----------------~~~i~--~~~~dgIilSgGPg~ 245 (382)
T CHL00197 193 LKIIVIDFGVK-------YNILRRLKS-FGCSITVVPATSP-----------------YQDIL--SYQPDGILLSNGPGD 245 (382)
T ss_pred CEEEEEECCcH-------HHHHHHHHH-CCCeEEEEcCCCC-----------------HHHHh--ccCCCEEEEcCCCCC
Confidence 57888876222 348999976 5777776442110 11121 236899999999763
Q ss_pred H------HHHHHhcCCCCCcEEEEeCCC
Q 009486 299 V------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 299 l------L~aar~~~~~~~PILGIN~G~ 320 (533)
. ....+.+....+||+||-+|+
T Consensus 246 p~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 246 PSAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 2 122333333468999999997
No 177
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=46.29 E-value=63 Score=32.06 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=22.1
Q ss_pred CccEEEEEeCchHHH------------HHHHhcCCCCCcEEEEeCCC
Q 009486 286 KVDLVVTLGGDGTVL------------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL------------~aar~~~~~~~PILGIN~G~ 320 (533)
++|.|| ++|-|.+- ...+.+.....|||||=+|.
T Consensus 39 ~~d~iI-lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~ 84 (210)
T CHL00188 39 QVHALV-LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGL 84 (210)
T ss_pred hCCEEE-ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHH
Confidence 478877 67756532 23333334578999999996
No 178
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=46.23 E-value=99 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=24.2
Q ss_pred CccEEEEEeCc----------hHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 286 KVDLVVTLGGD----------GTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 286 ~~DlVIvLGGD----------GTlL~aar~~~~~~~PILGIN~G~ 320 (533)
++|.+|+.||= +........+....+|||||=+|.
T Consensus 45 ~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~ 89 (198)
T COG0518 45 SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGH 89 (198)
T ss_pred CCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhH
Confidence 45999999994 333444444444556799999997
No 179
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=45.86 E-value=40 Score=39.78 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=25.6
Q ss_pred CCCccEEEEEeCchHH-----HHHHHhcC----CCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGTV-----LWAASIFK----GPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGTl-----L~aar~~~----~~~~PILGIN~G~ 320 (533)
..++|.||+.||-|.- ...++.+. ...+|||||-+|.
T Consensus 51 l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 51 LPLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred hcCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 3468999999999984 22222222 2359999999985
No 180
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=45.57 E-value=75 Score=32.40 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=27.6
Q ss_pred HHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC
Q 009486 278 KEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 278 ~~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~ 318 (533)
..+.++...+|++|+-|| +|+.-++.. ++|.+.|..
T Consensus 233 ~~m~~lm~~aDl~Is~~G-~T~~E~~a~----g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIGAAG-STSWERCCL----GLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEECCc-hHHHHHHHc----CCCEEEEEe
Confidence 345567788999999999 998887754 578877654
No 181
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.52 E-value=38 Score=32.73 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCccEEEEEeCchH------------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGT------------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGT------------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||. +|-|. +....+.+...+.|||||-.|.
T Consensus 36 ~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 36 AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 45899885 44333 1233343335678999999984
No 182
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=45.30 E-value=31 Score=37.19 Aligned_cols=75 Identities=24% Similarity=0.225 Sum_probs=45.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
.+|+++=--- -..++++|.+ .|..+.+-+.... ..++.. .++|.||.-||.|.
T Consensus 178 ~~I~viD~G~-------k~nivr~L~~-~G~~v~vvp~~~~-----------------~~~i~~--~~~DGIvLSgGPgd 230 (360)
T PRK12564 178 YKVVAIDFGV-------KRNILRELAE-RGCRVTVVPATTT-----------------AEEILA--LNPDGVFLSNGPGD 230 (360)
T ss_pred CEEEEEeCCc-------HHHHHHHHHH-CCCEEEEEeCCCC-----------------HHHHHh--cCCCEEEEeCCCCC
Confidence 5777775321 1358888876 4666665332110 111211 25899999999765
Q ss_pred H------HHHHHhcCCCCCcEEEEeCCC
Q 009486 299 V------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 299 l------L~aar~~~~~~~PILGIN~G~ 320 (533)
. +..++.+.....||+||-+|.
T Consensus 231 p~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 231 PAALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 3 344555555579999999986
No 183
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=44.32 E-value=63 Score=36.56 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=72.8
Q ss_pred ccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC-----------Cc----cCccCCcchHHHHHHHHHcCCceE
Q 009486 287 VDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS-----------LG----FMTPFHSEHYKDYLDSVLRGPISI 346 (533)
Q Consensus 287 ~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~-----------LG----FLt~~~~ed~~~~L~~ll~G~y~i 346 (533)
+|-|++-||=|. -+.|+++.....+|.|||-+|- +| +-++|+|+.-...+ .++.+.-.+
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv-~l~~eq~~~ 422 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVV-DLMPEQKDV 422 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceE-EeccccccC
Confidence 899999999764 5677888888899999999872 33 33444442111111 122211111
Q ss_pred E---EEeeeeE---EEeecccccccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHh
Q 009486 347 T---LRNRLQC---HVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSL 420 (533)
Q Consensus 347 e---~R~rL~v---~V~r~~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsL 420 (533)
. -.|||-. .+. .+.. ....|-. |.+..|..+ +| .+|..++..+..-|++|| +.
T Consensus 423 ~~lGGTmRLG~y~~~l~-~gT~----a~~lY~~--~~v~ERHRH----RY--EvN~~y~~~le~~Gl~~s--------g~ 481 (533)
T COG0504 423 VDLGGTMRLGAYPCRLK-PGTL----AAKLYGK--DEIYERHRH----RY--EVNNDYRDQLEKAGLVFS--------GT 481 (533)
T ss_pred CcCCceeeccceeeecC-CCcH----HHHHhCC--Ceeeeeccc----hh--hcCHHHHHHHHhCCeEEE--------EE
Confidence 1 1455532 221 1100 0011112 555555443 23 358888889999999998 56
Q ss_pred ccCCCCC----CCCCCceEEEeeCC
Q 009486 421 AAGGSMV----HPQVPGILFTPICP 441 (533)
Q Consensus 421 SAGGPIv----~P~v~aiviTPIcP 441 (533)
|..|-++ .|+-+-|+-+-..|
T Consensus 482 s~d~~lvEivE~~~hpfFv~~QfHP 506 (533)
T COG0504 482 SPDGGLVEIVELPDHPFFVATQFHP 506 (533)
T ss_pred cCCCCeEEEEEcCCCceEEEEcccc
Confidence 6766444 45555555554444
No 184
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=43.80 E-value=72 Score=31.53 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=46.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE-EEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLN-IYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~-V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
..+|++|.-.... ....+.+..+++.+ -|+. +.+- .+... .. ..+..+.+...++|.|++-|||
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~-lG~~~v~~~-~~~~~-----------~~-a~~~~~~~~l~~ad~I~~~GG~ 93 (217)
T cd03145 29 GARIVVIPAASEE-PAEVGEEYRDVFER-LGAREVEVL-VIDSR-----------EA-ANDPEVVARLRDADGIFFTGGD 93 (217)
T ss_pred CCcEEEEeCCCcC-hhHHHHHHHHHHHH-cCCceeEEe-ccCCh-----------HH-cCCHHHHHHHHhCCEEEEeCCc
Confidence 4577888665433 24446777777765 3442 2211 11000 00 0122234456789999999998
Q ss_pred hHHHH----------HHHhcCCCCCcEEEEeCCC
Q 009486 297 GTVLW----------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTlL~----------aar~~~~~~~PILGIN~G~ 320 (533)
=..|. +.+.....++|++|.+.|.
T Consensus 94 ~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA 127 (217)
T cd03145 94 QLRITSALGGTPLLDALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred HHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHH
Confidence 33222 2232223577888888775
No 185
>PLN02327 CTP synthase
Probab=43.28 E-value=84 Score=36.04 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=27.8
Q ss_pred hCCCccEEEEEeCc------hHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 283 LHTKVDLVVTLGGD------GTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 283 ~~~~~DlVIvLGGD------GTlL~aar~~~~~~~PILGIN~G~ 320 (533)
...++|.||+-||= |-+ .++++....++|+|||-+|.
T Consensus 359 ~L~~~DGIvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClGm 401 (557)
T PLN02327 359 LLKGADGILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLGM 401 (557)
T ss_pred hhccCCEEEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHHH
Confidence 45789999998883 443 45666666789999999883
No 186
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.76 E-value=87 Score=30.43 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCccEEEEEeCc--hH-------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGD--GT-------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGD--GT-------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.+|.-||- +. +....+.+...+.||+||=.|.
T Consensus 37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~ 81 (200)
T PRK13143 37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGM 81 (200)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 368998887752 22 2334455555678999998875
No 187
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=42.23 E-value=78 Score=34.14 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=45.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++|+++=-- ....++++|.+ .|+.+.+-+.... .+.+. ..++|.||.-||-|.
T Consensus 168 ~~V~viD~G-------~k~ni~~~L~~-~G~~v~vvp~~~~-----------------~~~i~--~~~~DGIiLsgGPgd 220 (354)
T PRK12838 168 KHVALIDFG-------YKKSILRSLSK-RGCKVTVLPYDTS-----------------LEEIK--NLNPDGIVLSNGPGD 220 (354)
T ss_pred CEEEEECCC-------HHHHHHHHHHH-CCCeEEEEECCCC-----------------HHHHh--hcCCCEEEEcCCCCC
Confidence 567766431 23678888876 4666665432110 11111 136899999999885
Q ss_pred H------HHHHHhcCCCCCcEEEEeCCC
Q 009486 299 V------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 299 l------L~aar~~~~~~~PILGIN~G~ 320 (533)
. +...+.+... +|||||-+|.
T Consensus 221 p~~~~~~~~~i~~~~~~-~PvlGIClG~ 247 (354)
T PRK12838 221 PKELQPYLPEIKKLISS-YPILGICLGH 247 (354)
T ss_pred hHHhHHHHHHHHHHhcC-CCEEEECHHH
Confidence 3 3444444444 8999999996
No 188
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=41.41 E-value=2.1e+02 Score=28.99 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC----------------CCccCccC---CcchHHHHHHHH
Q 009486 279 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG----------------SLGFMTPF---HSEHYKDYLDSV 339 (533)
Q Consensus 279 ~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G----------------~LGFLt~~---~~ed~~~~L~~l 339 (533)
++.++...+|++|+-+|=.|++-++. .++|++.++.+ ..|++.+. +++++.++|..+
T Consensus 243 ~~~~~l~~ad~~v~~~g~~~l~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGASTVAELAA----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred CHHHHHHhCCEEEECCChhHHHHHHH----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 35567788999999988335666664 36788887642 34776653 367777777777
Q ss_pred HcC
Q 009486 340 LRG 342 (533)
Q Consensus 340 l~G 342 (533)
++.
T Consensus 319 l~~ 321 (348)
T TIGR01133 319 LLD 321 (348)
T ss_pred HcC
Confidence 753
No 189
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=41.04 E-value=1.8e+02 Score=29.93 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=55.1
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 293 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvL 293 (533)
++++|+++.. ...+-...+...+.+.+.+.++..+.+ ......... ...+.. ....+|-+|+.
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~--------------~~~i~~l~~~~vdgiIi~ 88 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQ--------------NDQIDVLLAKGVKALAIN 88 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHH--------------HHHHHHHHHcCCCEEEEe
Confidence 4577888875 456677777788888887654566665 221110000 011122 23579999999
Q ss_pred eCchHHHH-HHHhcCCCCCcEEEEeCC
Q 009486 294 GGDGTVLW-AASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 294 GGDGTlL~-aar~~~~~~~PILGIN~G 319 (533)
+.|..... ..+.+...++|++-|+..
T Consensus 89 ~~~~~~~~~~l~~l~~~giPvV~vd~~ 115 (330)
T PRK15395 89 LVDPAAAPTVIEKARGQDVPVVFFNKE 115 (330)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 98876555 346655678999988763
No 190
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=41.02 E-value=2.3e+02 Score=27.73 Aligned_cols=125 Identities=11% Similarity=0.108 Sum_probs=67.5
Q ss_pred cCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHh-hh----cCCcccccccccchHHHhhhCCCccE
Q 009486 215 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAEL-LT----ESSYFSFVQTWKDEKEILLLHTKVDL 289 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l-~~----~~~~~~~i~~~~~~~~~~~~~~~~Dl 289 (533)
...+..|+.+.+.....-...+.++++.|.+ +++.+.+--...... .. ......+. .+.+..++.++...+|+
T Consensus 188 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 188 PGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR-GDIELVIVGNGLELEEESYELEGDPRVEFL-GAYPQEEIDDFYAEIDV 265 (359)
T ss_pred CCCceEEEEEecCccccCHHHHHHHHHHHHh-cCcEEEEEcCchhhhHHHHhhcCCCeEEEe-CCCCHHHHHHHHHhCCE
Confidence 3445668888886655555666666666654 456665522211111 00 00111111 12223556677788999
Q ss_pred EEEEe--CchHHHHHHHhcCCCCCcEEEEeCC---------CCccCccCC-cchHHHHHHHHHcC
Q 009486 290 VVTLG--GDGTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPFH-SEHYKDYLDSVLRG 342 (533)
Q Consensus 290 VIvLG--GDGTlL~aar~~~~~~~PILGIN~G---------~LGFLt~~~-~ed~~~~L~~ll~G 342 (533)
+|.-. ++|.=+.+...+. .+.||++-+.| .-||+.+.. .+++.+++..+++.
T Consensus 266 ~i~ps~~~e~~~~~~~Ea~a-~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 266 LVVPSIWPENFPLVIREALA-AGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred EEEcCcccCCCChHHHHHHH-CCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 88643 2333222222222 46799887754 357766543 67788888888763
No 191
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=40.45 E-value=1.7e+02 Score=28.60 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=64.0
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccc--hhHHhhh------cCCcccccccccchHHHhhhC
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPR--VRAELLT------ESSYFSFVQTWKDEKEILLLH 284 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~--~a~~l~~------~~~~~~~i~~~~~~~~~~~~~ 284 (533)
+...+..|+.+.+.....-.+.+.+++.-+.+. .++.+.+--. ....+.. ......+.. +.+..++..+.
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~ 276 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTG-FVPREELPDYY 276 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEec-cCChHHHHHHH
Confidence 344556677777654433334444455544432 4555554221 1111110 001111111 12234455667
Q ss_pred CCccEEEEEeCc----hHHHHHHHhcCCCCCcEEEEeCC---------CCccCccCCcchHHHHHHHHHcC
Q 009486 285 TKVDLVVTLGGD----GTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 285 ~~~DlVIvLGGD----GTlL~aar~~~~~~~PILGIN~G---------~LGFLt~~~~ed~~~~L~~ll~G 342 (533)
..+|++|....- .+++-+. ..++||++.+.| .-||+.+-...++.+.+..+++.
T Consensus 277 ~~ad~~l~~s~~e~~~~~~~Ea~----~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~ 343 (374)
T cd03817 277 KAADLFVFASTTETQGLVLLEAM----AAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQD 343 (374)
T ss_pred HHcCEEEecccccCcChHHHHHH----HcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhC
Confidence 789998865432 2333333 247899998875 35777765544788888888764
No 192
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=40.25 E-value=34 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=27.4
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~ 318 (533)
++...+|++|+=||-||++.++.. ++|++.+..
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~ 319 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALFN----GVPMVAVPQ 319 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHHh----CCCEEecCC
Confidence 456789999999999999998865 678888754
No 193
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.13 E-value=1.3e+02 Score=26.72 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=42.9
Q ss_pred EEeeecCC--CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCc
Q 009486 210 ISLKWESP--PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKV 287 (533)
Q Consensus 210 ~~l~w~~~--pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 287 (533)
|.+.|... |..|.|+.-..++.....+.+++..|+. .|+.|.++.. . .+... +. . ....++
T Consensus 16 ~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~-~gi~v~~d~~-~-sl~kq------lk----~----A~k~g~ 78 (121)
T cd00858 16 IVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRE-LGFSVKYDDS-G-SIGRR------YA----R----QDEIGT 78 (121)
T ss_pred EEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHH-CCCEEEEeCC-C-CHHHH------HH----H----hHhcCC
Confidence 33455432 5566777643336667788999999975 6888887654 2 22111 00 0 113568
Q ss_pred cEEEEEeCch
Q 009486 288 DLVVTLGGDG 297 (533)
Q Consensus 288 DlVIvLGGDG 297 (533)
.++|++|.+-
T Consensus 79 ~~~iiiG~~e 88 (121)
T cd00858 79 PFCVTVDFDT 88 (121)
T ss_pred CEEEEECcCc
Confidence 9999999763
No 194
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=39.87 E-value=1.8e+02 Score=31.28 Aligned_cols=110 Identities=14% Similarity=0.230 Sum_probs=70.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
-++||++++|+.+....+.+++.++++. .|++|+--.- .. ...+ ......+.+++|.+.+. =|-
T Consensus 159 ak~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v-~~--------~ndi-----~~a~~~l~g~~d~i~~p-~dn 222 (322)
T COG2984 159 AKSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAV-TS--------VNDI-----PRAVQALLGKVDVIYIP-TDN 222 (322)
T ss_pred CeeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEec-Cc--------cccc-----HHHHHHhcCCCcEEEEe-cch
Confidence 6899999999998899999999999976 7898864211 00 0001 12234456788877765 355
Q ss_pred HHHHHHHhc----CCCCCcEEEEeCC--CCccCccCCcchHH------HHHHHHHcCC
Q 009486 298 TVLWAASIF----KGPVPPIVPFSLG--SLGFMTPFHSEHYK------DYLDSVLRGP 343 (533)
Q Consensus 298 TlL~aar~~----~~~~~PILGIN~G--~LGFLt~~~~ed~~------~~L~~ll~G~ 343 (533)
|+-.+.+.+ ....+|+++=..+ .-|-++.+..+..+ ..+.++++|+
T Consensus 223 ~i~s~~~~l~~~a~~~kiPli~sd~~~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG~ 280 (322)
T COG2984 223 LIVSAIESLLQVANKAKIPLIASDTSSVKEGALAALGVDYKDLGKQTGEMVVKILKGK 280 (322)
T ss_pred HHHHHHHHHHHHHHHhCCCeecCCHHHHhcCcceeeccCHHHHHHHHHHHHHHHHcCC
Confidence 655544333 2357899996654 33455555544433 3477888884
No 195
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=39.80 E-value=90 Score=30.36 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=47.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
...+|++|.-...+ -........+.+.+ -|+++..-..+.. ..+....+....+|.|++-|||
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~-lG~~~~~~~~~~~---------------~~~~~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 28 AGARVLFIPTASGD-RDEYGEEYRAAFER-LGVEVVHLLLIDT---------------ANDPDVVARLLEADGIFVGGGN 90 (210)
T ss_pred CCCeEEEEeCCCCC-hHHHHHHHHHHHHH-cCCceEEEeccCC---------------CCCHHHHHHHhhCCEEEEcCCc
Confidence 35678888765433 23445666666654 3544331110000 0122344556789999999998
Q ss_pred hHHHH----------HHHhcCCCCCcEEEEeCCC
Q 009486 297 GTVLW----------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTlL~----------aar~~~~~~~PILGIN~G~ 320 (533)
=..+. +.+.....+.|++|++.|.
T Consensus 91 ~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 91 QLRLLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 43332 2222212478899988875
No 196
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=39.01 E-value=53 Score=34.37 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=41.3
Q ss_pred hhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-----------C--CccCcc---CCcchHHHHHHHHHcCC
Q 009486 281 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-----------S--LGFMTP---FHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 281 ~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-----------~--LGFLt~---~~~ed~~~~L~~ll~G~ 343 (533)
..+...+|++|+=||=||+..+... ++|++.+..+ . .|.... ++++++.++|..+++.+
T Consensus 299 ~~ll~~~d~~I~hgG~~t~~eal~~----GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~ 373 (401)
T cd03784 299 DWLLPRCAAVVHHGGAGTTAAALRA----GVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP 373 (401)
T ss_pred HHHhhhhheeeecCCchhHHHHHHc----CCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH
Confidence 4567789999999999999998864 6788887542 1 232222 35677777787777643
No 197
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.98 E-value=97 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCccEEEEEeCch--HH---HH-------HHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDG--TV---LW-------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDG--Tl---L~-------aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-||-- |. |+ ..+.......||+||-+|.
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~ 87 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGM 87 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHH
Confidence 5789999988621 11 11 1222224578999999884
No 198
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=38.90 E-value=68 Score=35.70 Aligned_cols=100 Identities=20% Similarity=0.396 Sum_probs=58.1
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
-|++||||+-+....+ +.|++-++++ +.++|++-|..-.. ++....-+.. -..-.-..++|++|+-=|
T Consensus 134 ~p~~IGVITS~tgAai----rDIl~~~~rR~P~~~viv~pt~VQG---~~A~~eIv~a----I~~an~~~~~DvlIVaRG 202 (440)
T COG1570 134 FPKKIGVITSPTGAAL----RDILHTLSRRFPSVEVIVYPTLVQG---EGAAEEIVEA----IERANQRGDVDVLIVARG 202 (440)
T ss_pred CCCeEEEEcCCchHHH----HHHHHHHHhhCCCCeEEEEeccccC---CCcHHHHHHH----HHHhhccCCCCEEEEecC
Confidence 3999999998876544 5677777543 66888887653321 1110000000 001112345899999877
Q ss_pred chHH--HH------HHHhcCCCCCcEEEEeCCCCccCccCCcch
Q 009486 296 DGTV--LW------AASIFKGPVPPIVPFSLGSLGFMTPFHSEH 331 (533)
Q Consensus 296 DGTl--L~------aar~~~~~~~PILGIN~G~LGFLt~~~~ed 331 (533)
=|.+ |+ .+|.+..+.+||++ -+|.=|++...|
T Consensus 203 GGSiEDLW~FNdE~vaRAi~~s~iPvIS----AVGHEtD~tL~D 242 (440)
T COG1570 203 GGSIEDLWAFNDEIVARAIAASRIPVIS----AVGHETDFTLAD 242 (440)
T ss_pred cchHHHHhccChHHHHHHHHhCCCCeEe----ecccCCCccHHH
Confidence 7887 33 44666677899987 344444444333
No 199
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=38.62 E-value=1.5e+02 Score=28.73 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
..++|+++..+.........+.+.+.+++ .|+++.... .... + +. ...+..+...+|.|+ .++|
T Consensus 130 g~~~i~~l~~~~~~~~~~r~~g~~~~~~~-~g~~~~~~~-~~~~---~----~~------~~~~~~~~~~~dai~-~~~d 193 (281)
T cd06325 130 DAKTVGVLYNPSEANSVVQVKELKKAAAK-LGIEVVEAT-VSSS---N----DV------QQAAQSLAGKVDAIY-VPTD 193 (281)
T ss_pred CCcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCEEEEEe-cCCH---H----HH------HHHHHHhcccCCEEE-EcCc
Confidence 46789998754433334445666666654 566643211 0000 0 00 112233444567655 5678
Q ss_pred hHHHHHHHhcC----CCCCcEEEEeC
Q 009486 297 GTVLWAASIFK----GPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~----~~~~PILGIN~ 318 (533)
.+.+.+.+.+. ...+||+|++-
T Consensus 194 ~~a~~~~~~~~~~~~~~~ipvig~d~ 219 (281)
T cd06325 194 NTVASAMEAVVKVANEAKIPVIASDD 219 (281)
T ss_pred hhHHhHHHHHHHHHHHcCCCEEEcCH
Confidence 87555444333 24789999864
No 200
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.26 E-value=75 Score=31.49 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=30.7
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHc-CCceEEEEeeee
Q 009486 293 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLR-GPISITLRNRLQ 353 (533)
Q Consensus 293 LGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~-G~y~ie~R~rL~ 353 (533)
+||= ||||+|-.-.. .+.|+. +|++|+..++.+.. |....+.|..|-
T Consensus 122 IGGp-smlRaAAKN~~-~V~vv~------------dp~dY~~v~~~l~~~g~~~~~~R~~lA 169 (187)
T cd01421 122 IGGP-SLLRAAAKNYK-DVTVLV------------DPADYQKVLEELKSNGSISEETRRRLA 169 (187)
T ss_pred CCcH-HHHHHHHhcCC-CeEEEc------------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5774 77775544322 333443 79999999999876 777666666553
No 201
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=38.00 E-value=1.8e+02 Score=27.52 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=51.7
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 297 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDG 297 (533)
+|++|.. ...+-..++...+.+++.+ .|+.+.+...-... ... ...+. ....++|.||..+.+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgvi~~~~~~ 66 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE-LGVELIVLDAQNDV-SKQ------------IQQIEDLIAQGVDGIIISPVDS 66 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh-cCceEEEECCCCCH-HHH------------HHHHHHHHHcCCCEEEEeCCCc
Confidence 4677763 3566777777888888865 57777664321100 000 01111 1234799999988876
Q ss_pred HHHH-HHHhcCCCCCcEEEEeCCC
Q 009486 298 TVLW-AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 TlL~-aar~~~~~~~PILGIN~G~ 320 (533)
..+. ..+.+....+|++.++...
T Consensus 67 ~~~~~~~~~l~~~~ip~V~~~~~~ 90 (267)
T cd01536 67 AALTPALKKANAAGIPVVTVDSDI 90 (267)
T ss_pred hhHHHHHHHHHHCCCcEEEecCCC
Confidence 6543 4455555678999988753
No 202
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=37.57 E-value=67 Score=36.32 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
...|+||.||| |+++-+++.++ ..++|++-|.+
T Consensus 268 ~r~D~IIAIGG-Gsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 268 TRSDAIVGLGG-GAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CCCcEEEEEcC-hHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 36899999999 99999998876 35777765554
No 203
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=37.53 E-value=2.6e+02 Score=28.54 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=40.3
Q ss_pred HhhhCCCccEEEEEe---CchHHHHHHHhcCCCCCcEEEEeC----------CCCccCccC-CcchHHHHHHHHHcC
Q 009486 280 ILLLHTKVDLVVTLG---GDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPF-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 280 ~~~~~~~~DlVIvLG---GDGTlL~aar~~~~~~~PILGIN~----------G~LGFLt~~-~~ed~~~~L~~ll~G 342 (533)
+..+...+|++|... |.|..+-- .+ ..++||++-+. |.-|+|.+. +++++.++|..+++.
T Consensus 272 ~~~~~~~ad~~v~~S~~Eg~~~~~lE--Am-a~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 272 LDEVYQKAQLSLLTSQSEGFGLSLME--AL-SHGLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred HHHHHhhhhEEEecccccccChHHHH--HH-hCCCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 455667899999866 44533222 22 34689998664 356788774 577888888888875
No 204
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=37.52 E-value=2.2e+02 Score=26.64 Aligned_cols=46 Identities=4% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhc
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTE 264 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~ 264 (533)
+++++|+|..+- +++++.++++++.+.| .|+.++--+.+++.+...
T Consensus 2 ~~~~~v~lsv~d~dK~~l~~~a~~l~~ll---~Gf~l~AT~gTa~~L~~~ 48 (142)
T PRK05234 2 PARKRIALIAHDHKKDDLVAWVKAHKDLL---EQHELYATGTTGGLIQEA 48 (142)
T ss_pred CcCcEEEEEEeccchHHHHHHHHHHHHHh---cCCEEEEeChHHHHHHhc
Confidence 456778887764 5677777777777766 368888888888766543
No 205
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=37.23 E-value=1.2e+02 Score=32.39 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=39.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-+.-... ....+.+.|. ++.+.+-+.... .+..+.+... .....+. ...-|+||.+|| |
T Consensus 20 ~r~lIVtD~~v~~l--~~~~l~~~L~---~~~~~~~~~~e~-----~k~l~~v~~~--~~~~~~~~~~r~d~iIaiGG-G 86 (346)
T cd08196 20 ENDVFIVDANVAEL--YRDRLDLPLD---AAPVIAIDATEE-----NKSLEAVSSV--IESLRQNGARRNTHLVAIGG-G 86 (346)
T ss_pred CeEEEEECccHHHH--HHHHHHHHhc---CCeEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCcEEEEECC-h
Confidence 78999997765543 5677777774 233333221110 1111111000 0011111 123389999999 9
Q ss_pred HHHHHHHhcC
Q 009486 298 TVLWAASIFK 307 (533)
Q Consensus 298 TlL~aar~~~ 307 (533)
.++.+++.++
T Consensus 87 sv~D~ak~vA 96 (346)
T cd08196 87 IIQDVTTFVA 96 (346)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 206
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=37.22 E-value=82 Score=31.35 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCccEEEEEeCchH--------------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGT--------------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGT--------------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||+-||-.. ++...+.+...+.||+||-.|.
T Consensus 39 ~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 39 PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHH
Confidence 46899999998421 4444555556789999999874
No 207
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=36.58 E-value=1.7e+02 Score=28.20 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=51.6
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 009486 221 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~-K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDGT 298 (533)
||+|. +..++-...+...+.+.++++.++.+.+...... .... ...+.. +..++|-+|+.+.|..
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vdgiii~~~~~~ 68 (272)
T cd06301 2 IGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDAKND-VATQ------------LSQVENFIAQGVDAIIVVPVDTA 68 (272)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHH------------HHHHHHHHHcCCCEEEEecCchh
Confidence 66665 4467777777888888887535788777432100 0000 011111 2347899999988865
Q ss_pred HH-HHHHhcCCCCCcEEEEeC
Q 009486 299 VL-WAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 299 lL-~aar~~~~~~~PILGIN~ 318 (533)
.. .....+...++|++.++.
T Consensus 69 ~~~~~~~~l~~~~iPvv~~~~ 89 (272)
T cd06301 69 ATAPIVKAANAAGIPLVYVNR 89 (272)
T ss_pred hhHHHHHHHHHCCCeEEEecC
Confidence 43 344555667899998875
No 208
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=36.14 E-value=1.9e+02 Score=27.61 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=49.6
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDGT 298 (533)
|||+.. ..++-...+...+.+.+++ .|+.+.+...-.... .. ...+.. ...++|.||+..++..
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdgiii~~~~~~ 67 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARA-AGYSLLLATTDYDAE-RE------------ADAVETLLRQRVDGLILTVADAA 67 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHH-CCCEEEEeeCCCCHH-HH------------HHHHHHHHhcCCCEEEEecCCCC
Confidence 666663 4566667777788888865 578777643211000 00 011111 2357999998887754
Q ss_pred HHHHHHhcCCCCCcEEEEeCC
Q 009486 299 VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G 319 (533)
.....+.+...++|++.++..
T Consensus 68 ~~~~~~~~~~~~ipvV~~~~~ 88 (266)
T cd06282 68 TSPALDLLDAERVPYVLAYND 88 (266)
T ss_pred chHHHHHHhhCCCCEEEEecc
Confidence 334445555668999888653
No 209
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=35.50 E-value=57 Score=34.13 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=38.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.+++++++....-+ .+...+++++|+++ +.+...+...+.. .+..--....++...+|++|++||
T Consensus 153 ~~~kv~vvsQTT~~--~~~~~~i~~~l~~~~~~~~~~~~nTIC~------------aT~~RQ~a~~~La~~vD~miVIGg 218 (281)
T PF02401_consen 153 DPKKVAVVSQTTQS--VEKFEEIVEALKKRFPELEGPVFNTICY------------ATQNRQEAARELAKEVDAMIVIGG 218 (281)
T ss_dssp STTCEEEEE-TTS---HHHHHHHHHHHHHHSTCEE-SCC-S--C------------HHHHHHHHHHHHHCCSSEEEEES-
T ss_pred CCCeEEEEEeeccc--HHHHHHHHHHHHHhCccccCCCCCCCCH------------hHHHHHHHHHHHHhhCCEEEEecC
Confidence 35789999987654 45678899998753 2232101111110 111112355678899999999999
Q ss_pred chH
Q 009486 296 DGT 298 (533)
Q Consensus 296 DGT 298 (533)
--.
T Consensus 219 ~~S 221 (281)
T PF02401_consen 219 KNS 221 (281)
T ss_dssp TT-
T ss_pred CCC
Confidence 754
No 210
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.34 E-value=95 Score=25.61 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=39.1
Q ss_pred CCEEEEEEcCC-ChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPN-SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~-~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
|..|.|++-.+ +++....+.+++..|+. .|+.|.++.... .+... +.. -...++.++|++|.+
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~~-~l~k~------i~~--------a~~~g~~~~iiiG~~ 64 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRNE-RPGVK------FAD--------ADLIGIPYRIVVGKK 64 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCCC-Ccccc------hhH--------HHhcCCCEEEEECCc
Confidence 55677876443 34677788999999975 588888864311 11110 110 113578999999954
No 211
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=35.31 E-value=20 Score=33.76 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCccEEEEEeCchHHH-----HHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGTVL-----WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGTlL-----~aar~~~~~~~PILGIN~G~ 320 (533)
..++|.||.-||.+... +..+.+.....|||||-+|.
T Consensus 39 ~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 39 LKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred ccCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 45789999999976542 22344445689999999986
No 212
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.70 E-value=1.2e+02 Score=27.19 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=50.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
|+|+||.-..++.. ....++++|.+ .|.+||. .+... ++.. +..+ ..+.+....+|++++.-.-.
T Consensus 1 ksiAVvGaS~~~~~--~g~~v~~~l~~-~G~~v~~Vnp~~~-~i~G-------~~~y---~sl~e~p~~iDlavv~~~~~ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGK--FGYRVLRNLKA-AGYEVYPVNPKGG-EILG-------IKCY---PSLAEIPEPIDLAVVCVPPD 66 (116)
T ss_dssp -EEEEET--SSTTS--HHHHHHHHHHH-TT-EEEEESTTCS-EETT-------EE-B---SSGGGCSST-SEEEE-S-HH
T ss_pred CEEEEEcccCCCCC--hHHHHHHHHHh-CCCEEEEECCCce-EECc-------EEee---ccccCCCCCCCEEEEEcCHH
Confidence 57899987665533 47889999987 6766653 33321 1111 1111 12233457899999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCC
Q 009486 298 TVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 298 TlL~aar~~~~~~~PILGIN~G 319 (533)
++..+.+.+...++.-+=+..|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHHcCCCEEEEEcc
Confidence 9999998887666666666666
No 213
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.31 E-value=2e+02 Score=27.81 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=50.3
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDGT 298 (533)
|+++.. .+++-...+...+.+.+++ .|+.+.+-..-.. .... ...+. .+..++|-+|+..+|.+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~l~~~~~~~vdgii~~~~~~~ 67 (273)
T cd06305 2 IAVVRYGGSGDFDQAYLAGTKAEAEA-LGGDLRVYDAGGD-DAKQ------------ADQIDQAIAQKVDAIIIQHGRAE 67 (273)
T ss_pred eEEEeecCCCcHHHHHHHHHHHHHHH-cCCEEEEECCCCC-HHHH------------HHHHHHHHHcCCCEEEEecCChh
Confidence 566653 5666667777888888876 5777766321100 0000 00011 12357999999988754
Q ss_pred -HHHHHHhcCCCCCcEEEEeCC
Q 009486 299 -VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 299 -lL~aar~~~~~~~PILGIN~G 319 (533)
.....+.+...++|++.++..
T Consensus 68 ~~~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 68 VLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred hhHHHHHHHHHcCCCEEEecCC
Confidence 333445555678999999864
No 214
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=34.10 E-value=26 Score=32.29 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=24.3
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEe
Q 009486 280 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFS 317 (533)
Q Consensus 280 ~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN 317 (533)
..++...+|+||+-||=||+.-++.. ++|.+-|.
T Consensus 66 m~~~m~~aDlvIs~aG~~Ti~E~l~~----g~P~I~ip 99 (167)
T PF04101_consen 66 MAELMAAADLVISHAGAGTIAEALAL----GKPAIVIP 99 (167)
T ss_dssp HHHHHHHHSEEEECS-CHHHHHHHHC----T--EEEE-
T ss_pred HHHHHHHcCEEEeCCCccHHHHHHHc----CCCeeccC
Confidence 45666789999999999999998875 46776654
No 215
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.70 E-value=2.7e+02 Score=26.71 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=63.1
Q ss_pred cCCCCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEccc--hhHHh---hhcCCcccccccccchHHHhhhCCCcc
Q 009486 215 ESPPQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVEPR--VRAEL---LTESSYFSFVQTWKDEKEILLLHTKVD 288 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e-~~gi~V~ve~~--~a~~l---~~~~~~~~~i~~~~~~~~~~~~~~~~D 288 (533)
......|+.+.+.....-...+.++++.|.+ .+++.+.+--. ....+ .........+.......++..+...+|
T Consensus 175 ~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 254 (348)
T cd03820 175 DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKAS 254 (348)
T ss_pred CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCC
Confidence 3445677787776554444445555555542 34555554211 11111 111000011111111234566777899
Q ss_pred EEEEEeC----chHHHHHHHhcCCCCCcEEEEeCC----------CCccCcc-CCcchHHHHHHHHHcC
Q 009486 289 LVVTLGG----DGTVLWAASIFKGPVPPIVPFSLG----------SLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 289 lVIvLGG----DGTlL~aar~~~~~~~PILGIN~G----------~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
++|.-.. =.+++-++. .++||+.-+.| ..||+.+ .+++++.+.|..+++.
T Consensus 255 ~~i~ps~~e~~~~~~~Ea~a----~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 255 IFVLTSRFEGFPMVLLEAMA----FGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred EEEeCccccccCHHHHHHHH----cCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 9887542 134444433 46788876542 2677665 3467888888888654
No 216
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=33.61 E-value=39 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCccEEEEEeCchHHHH---------HHHhcCCCCCcEEEEeCCCC
Q 009486 284 HTKVDLVVTLGGDGTVLW---------AASIFKGPVPPIVPFSLGSL 321 (533)
Q Consensus 284 ~~~~DlVIvLGGDGTlL~---------aar~~~~~~~PILGIN~G~L 321 (533)
..++|.+|+.||.++... ..........|++|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999887733 23333345679999988863
No 217
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.49 E-value=84 Score=32.62 Aligned_cols=93 Identities=17% Similarity=0.310 Sum_probs=50.5
Q ss_pred eecCCCCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhC--CCccE
Q 009486 213 KWESPPQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH--TKVDL 289 (533)
Q Consensus 213 ~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e-~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~--~~~Dl 289 (533)
.....|++||||+-+....... +++-+.. .+.+++++-+..... ++.....+.. -....... ..+|+
T Consensus 9 ~lP~~p~~I~vITs~~gAa~~D----~~~~~~~r~~~~~~~~~p~~vQG---~~A~~~I~~a---l~~~~~~~~~~~~Dv 78 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTGAAIQD----FLRTLKRRNPIVEIILYPASVQG---EGAAASIVSA---LRKANEMGQADDFDV 78 (319)
T ss_pred CCCCCCCEEEEEeCCchHHHHH----HHHHHHHhCCCcEEEEEeccccc---cchHHHHHHH---HHHHHhccccccccE
Confidence 3456799999999988766544 4444433 355777765543211 1000000000 00111111 36899
Q ss_pred EEEEeCchHHH--------HHHHhcCCCCCcEEE
Q 009486 290 VVTLGGDGTVL--------WAASIFKGPVPPIVP 315 (533)
Q Consensus 290 VIvLGGDGTlL--------~aar~~~~~~~PILG 315 (533)
||+.=|=|.+- ..++.+....+||+.
T Consensus 79 iii~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 79 IIIIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred EEEecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 99886667542 345666677789865
No 218
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=32.57 E-value=2.1e+02 Score=29.15 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=43.4
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEE---EEc-cchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNI---YVE-PRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 294 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V---~ve-~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLG 294 (533)
+|+|+.=...+...+..+-+.+-|++ .|+.. .++ .+..... ..+. .-.. -...++|+||++|
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~-~g~~~~~~~~~~~~a~~d~-------~~~~-----~~~~~l~~~~~DlIi~~g 67 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKE-LGYDEKNVEIEYKNAEGDP-------EKLR-----QIARKLKAQKPDLIIAIG 67 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHH-TT--CCCEEEEEEE-TT-H-------HHHH-----HHHHHHCCTS-SEEEEES
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHH-cCCccccEEEEEecCCCCH-------HHHH-----HHHHHHhcCCCCEEEEeC
Confidence 58899888888888899999999976 34332 111 1100000 0000 0011 1245899999999
Q ss_pred CchHHHHHHHhcCCCCCcE--EEE
Q 009486 295 GDGTVLWAASIFKGPVPPI--VPF 316 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PI--LGI 316 (533)
.+-|.. +++.+.+. +|| .||
T Consensus 68 t~aa~~-~~~~~~~~-iPVVf~~V 89 (294)
T PF04392_consen 68 TPAAQA-LAKHLKDD-IPVVFCGV 89 (294)
T ss_dssp HHHHHH-HHHH-SS--S-EEEECE
T ss_pred cHHHHH-HHHhcCCC-cEEEEEec
Confidence 887765 44455443 887 566
No 219
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=32.57 E-value=2.4e+02 Score=27.15 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=48.9
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 009486 221 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~-K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDGT 298 (533)
|||+. ...++-...+...+.+.+++ .|+.+.+...-... ... ...+. ....++|.+|++|.+..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiii~~~~~~ 67 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAA-HGYTLLVASSGYDL-DRE------------YAQARKLLERGVDGLALIGLDHS 67 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHH-CCCEEEEecCCCCH-HHH------------HHHHHHHHhcCCCEEEEeCCCCC
Confidence 56666 35677777888888888876 57777663210000 000 00111 12346899999987643
Q ss_pred HHHHHHhcCCCCCcEEEEeC
Q 009486 299 VLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~ 318 (533)
-.+.+.+...++|++.++.
T Consensus 68 -~~~~~~l~~~~iPvv~~~~ 86 (268)
T cd06273 68 -PALLDLLARRGVPYVATWN 86 (268)
T ss_pred -HHHHHHHHhCCCCEEEEcC
Confidence 2344455567899999865
No 220
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=32.45 E-value=35 Score=28.66 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=30.2
Q ss_pred ccHHHHHHHhhcCCCCCCCchhhhhhHHHHHHHH
Q 009486 36 QSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAK 69 (533)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (533)
..|+|+.|+|-..|-..+-.|.-++-|.|+++-.
T Consensus 2 ~PErA~LE~l~~~p~~~s~e~a~~l~egL~nLrp 35 (69)
T PF11459_consen 2 VPERAILELLSEVPKRQSFEEADELMEGLRNLRP 35 (69)
T ss_pred cHHHHHHHHHHhCCccCCHHHHHHHHHHHhhcCH
Confidence 4799999999999999998999999999998743
No 221
>PLN02734 glycyl-tRNA synthetase
Probab=31.70 E-value=1.4e+02 Score=35.21 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=65.1
Q ss_pred ceEEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCc
Q 009486 208 KQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKV 287 (533)
Q Consensus 208 ~~~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 287 (533)
..+.+-..-.|-+|.|+.=..++.....+.+|...|+. .|+.+.++..-. .+... +. . .....+
T Consensus 560 ~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~-~GIrVelDd~~~-SIGKR------yr------r--ADeiGI 623 (684)
T PLN02734 560 NVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTA-AGISHKIDITGT-SIGKR------YA------R--TDELGV 623 (684)
T ss_pred eEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHh-CCCEEEEECCCC-CHhHH------HH------H--HHHcCC
Confidence 44444444558888888766667788899999999975 689888864311 11110 00 0 112468
Q ss_pred cEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceE
Q 009486 288 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI 346 (533)
Q Consensus 288 DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~i 346 (533)
-++|++|.|||+----+ ..| =-..+..+++.+.|..+++|.-.+
T Consensus 624 Pf~ItIG~dgtVTIRdR------------dsg---eQ~rV~ldeLv~~I~~li~~~~~w 667 (684)
T PLN02734 624 PFAVTVDSDGSVTIRER------------DSK---DQVRVPVEEVASVVKDLTDGRMTW 667 (684)
T ss_pred CEEEEECCCCeEEEEEC------------CCC---ceEEeeHHHHHHHHHHHHcCCCCH
Confidence 89999998766521111 011 122234567778888888876443
No 222
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=31.19 E-value=2.8e+02 Score=26.80 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEccchhH--Hh----hhcCCcccccccccchHHHhhhCCCcc
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVEPRVRA--EL----LTESSYFSFVQTWKDEKEILLLHTKVD 288 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e-~~gi~V~ve~~~a~--~l----~~~~~~~~~i~~~~~~~~~~~~~~~~D 288 (533)
..+..|+.+.+.....-.....++++.+.+ ..++.+.+-..... .. .........+.......++..+...+|
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 345577777776554445555566666643 24566555211110 00 000000011111111233556677889
Q ss_pred EEEEEeCc----hHHHHHHHhcCCCCCcEEEEeCC---------CCccCccCC-cchHHHHHHHHHcC
Q 009486 289 LVVTLGGD----GTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPFH-SEHYKDYLDSVLRG 342 (533)
Q Consensus 289 lVIvLGGD----GTlL~aar~~~~~~~PILGIN~G---------~LGFLt~~~-~ed~~~~L~~ll~G 342 (533)
++|.-... ++++-|. ..+.||+.-+.| .-|++.+.. ++++.+.|..++..
T Consensus 266 i~i~ps~~e~~~~~~~Ea~----~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAM----AMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred EEEecCcccCcchHHHHHH----HcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 88865432 2333333 246788887663 457776643 67788888877654
No 223
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=1.4e+02 Score=28.87 Aligned_cols=113 Identities=14% Similarity=0.222 Sum_probs=65.1
Q ss_pred eEEeEEeccCCCcceEEEEEEECCeeEEEEe-cCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCC----CC
Q 009486 373 VLNEVTIDRGISSYLTNLECYCDNSFVTCVQ-GDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS----FR 447 (533)
Q Consensus 373 ALNEVvI~rg~~s~mi~lev~Idg~~v~~~r-gDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs----~R 447 (533)
.-+|+-|..+...++ =.|+.+|+.+.+.+ .||+..-|+-|.+=--- .+=+|.++.++-.-..|+--. |-
T Consensus 28 ~~~~v~~~~s~tGRi--RqV~~~G~~~~t~Ra~DG~~tL~~~Ga~~L~~----~l~~P~~RVvV~~E~e~f~r~Gk~VFa 101 (155)
T COG1370 28 FPDDVKIVLSKTGRI--RQVFVDGERIATVRANDGLFTLTIEGARRLHR----ALPFPRMRVVVSDEAEEFVRKGKSVFA 101 (155)
T ss_pred ccCCceEEEcCCCce--EEEEECCEEEEEEEcCCceEEechhhhHHHHh----cCCCCceEEEeccccHHHHHhccchhh
Confidence 345665643434443 36788999999999 99999888877654322 234566666665444454211 11
Q ss_pred CeeeC------CCCEEEEEeccCCC--CCEEEEEcCCcccccCCCCEEEEEec
Q 009486 448 PLILP------EHVTLRVQIPFNSR--SPAWASFDGKDRKQLAPGDALVCSMA 492 (533)
Q Consensus 448 PlVlp------~~~~I~I~v~~~~r--~~a~vsiDG~~~~~L~~Gd~I~I~~S 492 (533)
-.|+. ++.++-+ +..+.+ ..+.+.++|.+..++..|..|.|+..
T Consensus 102 KfVi~~D~~iR~~dEvlV-Vne~d~LlAvGra~ls~~E~~~~~~G~AVkVr~G 153 (155)
T COG1370 102 KFVIDVDEEIRAGDEVLV-VNEDDELLAVGRALLSGAEMREFERGMAVKVREG 153 (155)
T ss_pred hheeccCcccCCCCeEEE-ECCCCcEEEeeeEeecHHHHhhccccEEEEEecC
Confidence 11221 1122211 211111 12356778988888999999998864
No 224
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=30.74 E-value=42 Score=20.91 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhhhh
Q 009486 92 FELERARNLRLENK 105 (533)
Q Consensus 92 ~~~~~~~~~~~~~~ 105 (533)
-||||++|.++++.
T Consensus 3 aeLerLknerH~hd 16 (17)
T PF12107_consen 3 AELERLKNERHDHD 16 (17)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccc
Confidence 38999999988764
No 225
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=30.71 E-value=2.2e+02 Score=27.54 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcC---Ce--EEEEcc-chhHHhhhcCCcccccccccchHHHh-hhCCCccEEE
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQK---KL--NIYVEP-RVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVV 291 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~---gi--~V~ve~-~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVI 291 (533)
+|||+.. ..++-...++..+.+.+++ . |. ++.+.. .-..... ...+. ....++|.||
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~~~~g~~~~l~i~~~~~~~~~~--------------~~~~~~~~~~~vdgiI 65 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKE-LKKAGLISEFIVTSADGDVAQQ--------------IADIRNLIAQGVDAII 65 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHh-hhccCCeeEEEEecCCCCHHHH--------------HHHHHHHHHcCCCEEE
Confidence 3666663 4555666677777777765 4 54 444422 1100000 00011 1235899999
Q ss_pred EEeCchHHHH-HHHhcCCCCCcEEEEeCC
Q 009486 292 TLGGDGTVLW-AASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 292 vLGGDGTlL~-aar~~~~~~~PILGIN~G 319 (533)
+.+.|...+. ....+...++|++.++..
T Consensus 66 i~~~~~~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 66 INPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred EeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence 9998854333 445555568999999853
No 226
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=30.70 E-value=5.1e+02 Score=25.14 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=59.5
Q ss_pred EEEEEEcCC----ChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 220 TVVILTKPN----SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 220 ~VlIV~K~~----~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
||+||++.. ...+......+...|.+..+++|.+..+... +. . +..+++|+||....
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~--------------~~-~----~~L~~~Dvvv~~~~ 61 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD--------------LT-P----ENLKGYDVVVFYNT 61 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC--------------TS-H----HCHCT-SEEEEE-S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc--------------CC-h----hHhcCCCEEEEECC
Confidence 689998872 3333444555555555467898877553111 00 1 12468999999988
Q ss_pred chHH-----HHHHHhcCCCCCcEEEEe-CCCCccCccCCcchHHHHHHHHHcCCceEE-EEeeeeEEE
Q 009486 296 DGTV-----LWAASIFKGPVPPIVPFS-LGSLGFMTPFHSEHYKDYLDSVLRGPISIT-LRNRLQCHV 356 (533)
Q Consensus 296 DGTl-----L~aar~~~~~~~PILGIN-~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie-~R~rL~v~V 356 (533)
.|+. ..+.+.+...+.+++|+. .+...|- +..+ ...++-|.|.-. ......+.+
T Consensus 62 ~~~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~------~~~~-~~~l~Gg~f~~h~~~~~~~v~~ 122 (217)
T PF06283_consen 62 GGDELTDEQRAALRDYVENGGGLVGLHGAATDSFP------DWPE-YNELLGGYFKGHPPPQPFTVRV 122 (217)
T ss_dssp SCCGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT------T-HH-HHHHHS--SEEEECEEEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHcCCCEEEEcccccccch------hHHH-HHHeeCccccCCCCCceEEEEE
Confidence 8743 333444445788999999 4445552 2333 334777877655 334444443
No 227
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=30.46 E-value=1.9e+02 Score=28.04 Aligned_cols=87 Identities=7% Similarity=-0.091 Sum_probs=50.1
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccc-hhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPR-VRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~-~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGD 296 (533)
+||++.+ ..++-...+...+.+.+.+ .|+.+.+... ........ ..-+.. ...++|.+|+.+.+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~------------~~~i~~l~~~~vdgiIi~~~~ 67 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LGVSVDIQAAPSEGDQQGQ------------LSIAENMINKGYKGLLFSPIS 67 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hCCeEEEEccCCCCCHHHH------------HHHHHHHHHhCCCEEEECCCC
Confidence 3677775 4667777777778888865 5777765321 00000000 001111 23468999888877
Q ss_pred hHH-HHHHHhcCCCCCcEEEEeCC
Q 009486 297 GTV-LWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 297 GTl-L~aar~~~~~~~PILGIN~G 319 (533)
.+. -.....+...++|++.++..
T Consensus 68 ~~~~~~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 68 DVNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred hHHhHHHHHHHHHCCCeEEEECCC
Confidence 553 33445555678999998753
No 228
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=30.40 E-value=2.1e+02 Score=28.01 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=45.1
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~-gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
.+..+|++|.-... ...+....+.+.+.+ - |+++..-.... +....+...++|+|++=|
T Consensus 29 ~~~~~i~~IptAs~-~~~~~~~~~~~a~~~-l~G~~~~~~~~~~------------------~~~~~~~l~~ad~I~l~G 88 (212)
T cd03146 29 KARPKVLFVPTASG-DRDEYTARFYAAFES-LRGVEVSHLHLFD------------------TEDPLDALLEADVIYVGG 88 (212)
T ss_pred cCCCeEEEECCCCC-CHHHHHHHHHHHHhh-ccCcEEEEEeccC------------------cccHHHHHhcCCEEEECC
Confidence 34568898876554 233556666777754 4 55544321100 011123345789888777
Q ss_pred CchHHHHHHHhc------------CCCCCcEEEEeCCC
Q 009486 295 GDGTVLWAASIF------------KGPVPPIVPFSLGS 320 (533)
Q Consensus 295 GDGTlL~aar~~------------~~~~~PILGIN~G~ 320 (533)
|| ..+..+.+ ...+.|++|+..|.
T Consensus 89 G~--~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 89 GN--TFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred ch--HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 64 33333222 23467888888874
No 229
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=30.18 E-value=5.7e+02 Score=25.57 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=64.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEE----Ee
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVT----LG 294 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIv----LG 294 (533)
+|+||- +++. +...+..+|.. .|..|..-.+....+ ... .. +|+||. -+
T Consensus 2 ~ILive--Dd~~---i~~~l~~~L~~-~g~~v~~~~~~~~a~-------------------~~~~~~-~dlviLD~~lP~ 55 (229)
T COG0745 2 RILLVE--DDPE---LAELLKEYLEE-EGYEVDVAADGEEAL-------------------EAAREQ-PDLVLLDLMLPD 55 (229)
T ss_pred eEEEEc--CCHH---HHHHHHHHHHH-CCCEEEEECCHHHHH-------------------HHHhcC-CCEEEEECCCCC
Confidence 456654 4443 35667777754 688777654332211 111 12 788877 46
Q ss_pred Cch-HHHHHHHhcCCCCCcEEEE-------------eCCCCccCcc-CCcchHHHHHHHHHcCCce
Q 009486 295 GDG-TVLWAASIFKGPVPPIVPF-------------SLGSLGFMTP-FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 295 GDG-TlL~aar~~~~~~~PILGI-------------N~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ 345 (533)
+|| ++++-.|...+..+||+=+ +.|---|++. |++.++...+..++...+.
T Consensus 56 ~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 56 LDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 889 7888888446678888754 4566667664 9999999999998876544
No 230
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.14 E-value=2.3e+02 Score=27.58 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=50.6
Q ss_pred EEEEEEcC--CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 009486 220 TVVILTKP--NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K~--~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGD 296 (533)
+|+++..- .++-...+...+.+.+.+ .|+.+.+...-....... ...+. ....++|.+|+.+.+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~~v~~~~~~~~~~~~~------------~~~i~~l~~~~vdgiii~~~~ 67 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGVDVEYRGPETFDVADM------------ARLIEAAIAAKPDGIVVTIPD 67 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCEEEEECCCCCCHHHH------------HHHHHHHHHhCCCEEEEeCCC
Confidence 46777653 466666777777777765 577776632110000000 00011 123579999999988
Q ss_pred hH-HHHHHHhcCCCCCcEEEEeCC
Q 009486 297 GT-VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 297 GT-lL~aar~~~~~~~PILGIN~G 319 (533)
.+ +..+.+.+...++|++-++..
T Consensus 68 ~~~~~~~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 68 PDALDPAIKRAVAAGIPVISFNAG 91 (271)
T ss_pred hHHhHHHHHHHHHCCCeEEEeCCC
Confidence 75 344455555667999999853
No 231
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=29.58 E-value=1.7e+02 Score=29.77 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=45.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE-EEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLN-IYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~-V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.+|++|+-... ...+.+....++|+. -|++ |.+- .+... + . ..+.+..+....+|.|++-|||=
T Consensus 29 ~rI~~iptAS~-~~~~~~~~~~~~~~~-lG~~~v~~l-~i~~r---~--------~-a~~~~~~~~l~~ad~I~~~GGnq 93 (250)
T TIGR02069 29 AIIVIITSASE-EPREVGERYITIFSR-LGVKEVKIL-DVRER---E--------D-ASDENAIALLSNATGIFFTGGDQ 93 (250)
T ss_pred ceEEEEeCCCC-ChHHHHHHHHHHHHH-cCCceeEEE-ecCCh---H--------H-ccCHHHHHHHhhCCEEEEeCCCH
Confidence 37888875443 233456666666654 4542 2110 00000 0 0 00122334567899999999992
Q ss_pred HHH----------HHHHhcCCCCCcEEEEeCCC
Q 009486 298 TVL----------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 TlL----------~aar~~~~~~~PILGIN~G~ 320 (533)
..| .+.+.....+.|+.|.+.|.
T Consensus 94 ~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 94 LRITSLLGDTPLLDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHH
Confidence 222 22332233468899988886
No 232
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=29.58 E-value=3.3e+02 Score=22.55 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=54.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++|+++.-..-....-+..++-+++.+ .++.+.++..... ++.....++|+||+----
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~-------------------~~~~~~~~~Dliist~~~-- 58 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIA-------------------EVPSLLDDADLIVSTTKV-- 58 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHH-------------------HhhcccCCCcEEEEcCCc--
Confidence 478888877766666778888899964 5665554321111 111123578988874321
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHH
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSV 339 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~l 339 (533)
-.....|++=|+. ||++.+.+++.+.|+.+
T Consensus 59 -------~~~~~~p~i~v~~----~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 59 -------PEDYGIPVINGLP----FLTGIGEDKVYEEILEA 88 (89)
T ss_pred -------CCCCCCCEEEEee----ccccCChHHHHHHHHHh
Confidence 1123568776653 88888888887777654
No 233
>PRK00758 GMP synthase subunit A; Validated
Probab=29.33 E-value=1.3e+02 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred cEEEEEeCchHHHH---HHHhcCCCCCcEEEEeCCC
Q 009486 288 DLVVTLGGDGTVLW---AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 288 DlVIvLGGDGTlL~---aar~~~~~~~PILGIN~G~ 320 (533)
|.+|.-||.. +-+ ..+.+....+|||||-+|.
T Consensus 43 dgivi~Gg~~-~~~~~~~~~~l~~~~~PilGIC~G~ 77 (184)
T PRK00758 43 DGLILSGGPD-IERAGNCPEYLKELDVPILGICLGH 77 (184)
T ss_pred CEEEECCCCC-hhhccccHHHHHhCCCCEEEEeHHH
Confidence 8899889873 311 1223324579999999996
No 234
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.82 E-value=1.1e+02 Score=32.20 Aligned_cols=74 Identities=11% Similarity=0.162 Sum_probs=42.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
+++++++....-+ .+.+.+++++|+.+ .-++.+-..+.. .+..--....++...+|++|++||--
T Consensus 156 ~~kv~~vsQTT~~--~~~~~~iv~~l~~~-~~~~~v~~TIC~------------aT~~RQ~a~~~La~~vD~miVVGg~~ 220 (281)
T PRK12360 156 LDKACVVAQTTII--PELWEDILNVIKLK-SKELVFFNTICS------------ATKKRQESAKELSKEVDVMIVIGGKH 220 (281)
T ss_pred ccCEEEEECCCCc--HHHHHHHHHHHHHh-CcccccCCCcch------------hhhhHHHHHHHHHHhCCEEEEecCCC
Confidence 4789999876544 34577888888652 222211111111 11121234567788999999999972
Q ss_pred -----HHHHHHHhc
Q 009486 298 -----TVLWAASIF 306 (533)
Q Consensus 298 -----TlL~aar~~ 306 (533)
-|+..++..
T Consensus 221 SsNT~rL~eia~~~ 234 (281)
T PRK12360 221 SSNTQKLVKICEKN 234 (281)
T ss_pred CccHHHHHHHHHHH
Confidence 244455543
No 235
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=28.81 E-value=2.1e+02 Score=29.88 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEc-----cchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcC
Q 009486 233 QILCAQMVRWLREQKKLNIYVE-----PRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFK 307 (533)
Q Consensus 233 ~~~~~el~~~L~e~~gi~V~ve-----~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~aar~~~ 307 (533)
.+...++++.|.+ .+..|++- ...+..+...-.....+..-.+-.++..+...+|+ ++|.|.-.++.|..+.
T Consensus 194 ~e~~~~l~~~l~~-~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l--~I~~DSg~~HlAaA~~ 270 (334)
T COG0859 194 LEHYAELAELLIA-KGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL--VIGNDSGPMHLAAALG 270 (334)
T ss_pred HHHHHHHHHHHHH-CCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE--EEccCChHHHHHHHcC
Confidence 3456778888876 45666661 11222222111000001111112334455677888 7899999999998874
Q ss_pred CCCCcEEEEeC
Q 009486 308 GPVPPIVPFSL 318 (533)
Q Consensus 308 ~~~~PILGIN~ 318 (533)
+|++||=-
T Consensus 271 ---~P~I~iyg 278 (334)
T COG0859 271 ---TPTIALYG 278 (334)
T ss_pred ---CCEEEEEC
Confidence 57887643
No 236
>PRK11249 katE hydroperoxidase II; Provisional
Probab=28.69 E-value=1.7e+02 Score=34.84 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred eecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhhh-CCCccEE
Q 009486 213 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLV 290 (533)
Q Consensus 213 ~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlV 290 (533)
.|..+-++|+|+.-..-.. ..+..+.+.|.. .|+.|.+ .+.. ..+... ... .+. .+..+... ...+|.|
T Consensus 592 ~~~~~gRKIaILVaDG~d~--~ev~~~~daL~~-AGa~V~VVSp~~-G~V~~s-~G~-~I~---aD~t~~~~~Sv~FDAV 662 (752)
T PRK11249 592 DGDIKGRKVAILLNDGVDA--ADLLAILKALKA-KGVHAKLLYPRM-GEVTAD-DGT-VLP---IAATFAGAPSLTFDAV 662 (752)
T ss_pred CCCccccEEEEEecCCCCH--HHHHHHHHHHHH-CCCEEEEEECCC-CeEECC-CCC-EEe---cceeeccCCccCCCEE
Confidence 6666778899998765432 224567777865 4555544 2221 111110 000 010 01111111 2358999
Q ss_pred EEEeCc---------hHHHHHHHhcCCCCCcEEEEeCC
Q 009486 291 VTLGGD---------GTVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 291 IvLGGD---------GTlL~aar~~~~~~~PILGIN~G 319 (533)
++.||. +-++..++.+.....||.+|..|
T Consensus 663 vVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG 700 (752)
T PRK11249 663 IVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA 700 (752)
T ss_pred EECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 999994 33455555555677888888765
No 237
>PTZ00287 6-phosphofructokinase; Provisional
Probab=28.41 E-value=48 Score=41.70 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=26.2
Q ss_pred CCccEEEEEeCchHHHHHHHhcC---CCCCc--EEEEeC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK---GPVPP--IVPFSL 318 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~---~~~~P--ILGIN~ 318 (533)
-++|.+|++|||||+-.|+++.. ..++| |+||..
T Consensus 270 l~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPK 308 (1419)
T PTZ00287 270 LKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPK 308 (1419)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEee
Confidence 47899999999999988877542 34566 688763
No 238
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.30 E-value=3.9e+02 Score=25.78 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=56.3
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 297 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDG 297 (533)
|++|.. .+++-..++...+.+.+.+. .++.+.+-..... .... ...+. ....++|-+|+.+.|.
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~i~~~~~~~~dgiIi~~~~~ 68 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYD-LNKQ------------VSQIDNFIAAKVDLILLNAVDS 68 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC-HHHH------------HHHHHHHHHhCCCEEEEeCCCh
Confidence 566664 46777777788888888652 3566655321100 0000 00111 1245789999988886
Q ss_pred HH-HHHHHhcCCCCCcEEEEeCCCCccCccCCcchH
Q 009486 298 TV-LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHY 332 (533)
Q Consensus 298 Tl-L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~ 332 (533)
.. -...+.+...++||+-++....+...-+..++.
T Consensus 69 ~~~~~~i~~~~~~~ipvv~~~~~~~~~~~~V~~d~~ 104 (271)
T cd06321 69 KGIAPAVKRAQAAGIVVVAVDVAAEGADATVTTDNV 104 (271)
T ss_pred hHhHHHHHHHHHCCCeEEEecCCCCCccceeeechH
Confidence 52 233455555678999998765554444555554
No 239
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=28.27 E-value=2.5e+02 Score=26.92 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=50.4
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCchH
Q 009486 221 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~-K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDGT 298 (533)
|+|+. ...++-...+...+.+++++ .|+.+.+...-... . ... ..-...+ ..++|-+|..+++..
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-----~--~~~-----~~~~~~l~~~~vdgiii~~~~~~ 68 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRD-TGYQLVIEPCDSGS-----P--DLA-----ERVRALLQRSRVDGVILTPPLSD 68 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHh-CCCeEEEEeCCCCc-----h--HHH-----HHHHHHHHHCCCCEEEEeCCCCC
Confidence 56665 45667777788888888875 57777664211000 0 000 0011112 357899999988754
Q ss_pred HHHHHHhcCCCCCcEEEEeC
Q 009486 299 VLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~ 318 (533)
.....+.+...++|++-|+.
T Consensus 69 ~~~~~~~~~~~~ipvv~i~~ 88 (270)
T cd01545 69 NPELLDLLDEAGVPYVRIAP 88 (270)
T ss_pred ccHHHHHHHhcCCCEEEEec
Confidence 44445555667899998875
No 240
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.86 E-value=3.5e+02 Score=26.10 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=50.4
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccch-hHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRV-RAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~-a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGD 296 (533)
+|||+.. ..++-...+...+.+++++ .|+.+.+.... ....... ..-+. -...++|-||+.+.|
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~------------~~~i~~l~~~~vdgvii~~~~ 67 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE-LGVKVTFQGPASETDVAGQ------------VNLLENAIARGPDAILLAPTD 67 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH-cCCEEEEecCccCCCHHHH------------HHHHHHHHHhCCCEEEEcCCC
Confidence 4777764 3566677788888888876 57777764210 0000000 00011 123479999998887
Q ss_pred hHHHH-HHHhcCCCCCcEEEEeCC
Q 009486 297 GTVLW-AASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 297 GTlL~-aar~~~~~~~PILGIN~G 319 (533)
...+. ..+.+...++|++.++..
T Consensus 68 ~~~~~~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 68 AKALVPPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred hhhhHHHHHHHHHCCCCEEEecCC
Confidence 65322 334444567899998753
No 241
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.83 E-value=3.2e+02 Score=26.40 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=57.2
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCchH
Q 009486 221 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~-K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDGT 298 (533)
|+||. ...++-...+...+.+.+++ .|+.+.+...-... ... ...+..+ ..++|-||+.+++..
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~l~~~~vdgii~~~~~~~ 67 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRA-AGYSLLIANSLNDP-ERE------------LEILRSFEQRRMDGIIIAPGDER 67 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cCCEEEEEeCCCCh-HHH------------HHHHHHHHHcCCCEEEEecCCCC
Confidence 56666 45677777788888888876 57777664211000 000 0111112 357999999987532
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHH---HHHHHHHc
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~---~~L~~ll~ 341 (533)
.-...+.+...++|++-++...-..+.-+..++.. .+.+.+++
T Consensus 68 ~~~~~~~~~~~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~ 113 (269)
T cd06281 68 DPELVDALASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLIS 113 (269)
T ss_pred cHHHHHHHHhCCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHH
Confidence 11223334445789998886421122334445543 34444554
No 242
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=27.63 E-value=3.6e+02 Score=26.53 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=40.8
Q ss_pred hHHHhhhCCCccEEEEE------eCchHHHHHHHhcCCCCCcEEEEeCC--------CCccCccC-CcchHHHHHHHHHc
Q 009486 277 EKEILLLHTKVDLVVTL------GGDGTVLWAASIFKGPVPPIVPFSLG--------SLGFMTPF-HSEHYKDYLDSVLR 341 (533)
Q Consensus 277 ~~~~~~~~~~~DlVIvL------GGDGTlL~aar~~~~~~~PILGIN~G--------~LGFLt~~-~~ed~~~~L~~ll~ 341 (533)
..++..+...+|++|.- |.-++++.|. ..++||+.-+.| .-|++.+. +++++.++|..+++
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~----a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSGVLAYAI----GFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccchHHHHHH----HcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHc
Confidence 45566777889998853 3334666543 246788887764 34666553 46778888888876
Q ss_pred C
Q 009486 342 G 342 (533)
Q Consensus 342 G 342 (533)
.
T Consensus 334 ~ 334 (366)
T cd03822 334 D 334 (366)
T ss_pred C
Confidence 4
No 243
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=27.61 E-value=1.2e+02 Score=32.07 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.++++|+....-. .+.+.+++++|+++ +.+.+-....+.. .+..--....++...+|++|++||-
T Consensus 155 ~~~v~vvsQTT~~--~~~~~~i~~~l~~~~~~~~v~~~nTIC~------------aT~~RQ~a~~~La~~vD~miVVGg~ 220 (298)
T PRK01045 155 PDKLALVTQTTLS--VDDTAEIIAALKERFPEIQGPPKDDICY------------ATQNRQEAVKELAPQADLVIVVGSK 220 (298)
T ss_pred CCcEEEEEcCCCc--HHHHHHHHHHHHHhCcCcccCCCCCcch------------hhHHHHHHHHHHHhhCCEEEEECCC
Confidence 4789999876544 45578888888652 2222200111110 1111123456778899999999997
Q ss_pred h
Q 009486 297 G 297 (533)
Q Consensus 297 G 297 (533)
-
T Consensus 221 ~ 221 (298)
T PRK01045 221 N 221 (298)
T ss_pred C
Confidence 3
No 244
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=27.52 E-value=85 Score=32.87 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~-gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
+++++++....-+ .+.+.+++++|+++. ..++-+... .+ ..+..--....++...+|++|++||-
T Consensus 153 ~~~v~vvsQTT~~--~~~~~~i~~~l~~~~~~~~~~~~nT----------IC--~AT~~RQ~a~~~la~~vD~miVVGg~ 218 (280)
T TIGR00216 153 EDLLGVVSQTTLS--QEDTKEIVAELKARVPQKEVPVFNT----------IC--YATQNRQDAVKELAPEVDLMIVIGGK 218 (280)
T ss_pred CCcEEEEEcCCCc--HHHHHHHHHHHHHhCCCcCCCCCCC----------cc--cccHHHHHHHHHHHhhCCEEEEECCC
Confidence 5779999876543 455788888886521 022211111 11 11222223466778899999999996
No 245
>PF08947 BPS: BPS (Between PH and SH2) ; InterPro: IPR015042 The BPS (Between PH and SH2) domain, comprised of 2 beta strands and a C-terminal helix, is an approximately 45 residue region found in the adaptor proteins Grb7/10/14 that mediates inhibition of the tyrosine kinase domain of the insulin receptor by binding of the N-terminal portion of the BPS domain to the substrate peptide groove of the kinase, acting as a pseudosubstrate inhibitor []. ; PDB: 2AUH_B.
Probab=27.35 E-value=50 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=13.9
Q ss_pred HHHhhhHhHHHHHHHHHHHHH
Q 009486 73 RAAEGKAAAQAEAAEWKRRFE 93 (533)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ 93 (533)
.-+|-+++|+.|.--|+||-.
T Consensus 23 nP~EA~s~a~eEg~~WRrr~~ 43 (49)
T PF08947_consen 23 NPKEAQSAALEEGQSWRRRSS 43 (49)
T ss_dssp -HHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHhcc
Confidence 446777899999999998754
No 246
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=27.23 E-value=91 Score=32.03 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=41.2
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-----------------CCccCccC---CcchHHHHHHH
Q 009486 279 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-----------------SLGFMTPF---HSEHYKDYLDS 338 (533)
Q Consensus 279 ~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-----------------~LGFLt~~---~~ed~~~~L~~ 338 (533)
++.++...+|++|+-+|=+|++.++. .++|++.+..| ..|++.+. +++.+.++|..
T Consensus 245 ~~~~~~~~~d~~i~~~g~~~~~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ 320 (357)
T PRK00726 245 DMAAAYAAADLVICRAGASTVAELAA----AGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLE 320 (357)
T ss_pred hHHHHHHhCCEEEECCCHHHHHHHHH----hCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHH
Confidence 35567788999999887667766654 36799887542 24566553 26778888888
Q ss_pred HHcC
Q 009486 339 VLRG 342 (533)
Q Consensus 339 ll~G 342 (533)
+++.
T Consensus 321 ll~~ 324 (357)
T PRK00726 321 LLSD 324 (357)
T ss_pred HHcC
Confidence 7764
No 247
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=26.95 E-value=3.9e+02 Score=25.87 Aligned_cols=83 Identities=12% Similarity=0.104 Sum_probs=48.7
Q ss_pred CEEEEEEc--------CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHH-hhh-CCCcc
Q 009486 219 QTVVILTK--------PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI-LLL-HTKVD 288 (533)
Q Consensus 219 k~VlIV~K--------~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~-~~~-~~~~D 288 (533)
+.|+|+.- ..++-...+.+.+.+.+++ .|+.+.+...-... ...+ ..+ ..++|
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~-~g~~~~v~~~~~~~----------------~~~~~~~l~~~~~d 66 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAE-RGYDLLLSFVSSPD----------------RDWLARYLASGRAD 66 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHH-cCCEEEEEeCCchh----------------HHHHHHHHHhCCCC
Confidence 46788773 2445566677778888875 57776653210000 0011 112 35799
Q ss_pred EEEEEeCchHHHHHHHhcCCCCCcEEEEeCC
Q 009486 289 LVVTLGGDGTVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 289 lVIvLGGDGTlL~aar~~~~~~~PILGIN~G 319 (533)
-||+.+.+..- .+.+.+...++||+.|+..
T Consensus 67 giii~~~~~~~-~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 67 GVILIGQHDQD-PLPERLAETGLPFVVWGRP 96 (275)
T ss_pred EEEEeCCCCCh-HHHHHHHhCCCCEEEECCc
Confidence 99998865432 3344555568999998763
No 248
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=26.92 E-value=6.4e+02 Score=25.14 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=46.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|+++.... .........+.+.+++ .|+++........ ....+ ...+.++ ..++|.|++.+.
T Consensus 132 g~~~vail~~~~-~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~----~~~d~--------~~~~~~l~~~~pdaIi~~~~ 197 (312)
T cd06333 132 GVKTVAFIGFSD-AYGESGLKELKALAPK-YGIEVVADERYGR----TDTSV--------TAQLLKIRAARPDAVLIWGS 197 (312)
T ss_pred CCCEEEEEecCc-HHHHHHHHHHHHHHHH-cCCEEEEEEeeCC----CCcCH--------HHHHHHHHhCCCCEEEEecC
Confidence 458899997644 3344556667777765 5777643221110 00001 1112222 356899998874
Q ss_pred ch---HHHHHHHhcCCCCCcEEEE
Q 009486 296 DG---TVLWAASIFKGPVPPIVPF 316 (533)
Q Consensus 296 DG---TlL~aar~~~~~~~PILGI 316 (533)
+. -++++++.. +..+|++|.
T Consensus 198 ~~~~~~~~~~l~~~-g~~~p~~~~ 220 (312)
T cd06333 198 GTPAALPAKNLRER-GYKGPIYQT 220 (312)
T ss_pred CcHHHHHHHHHHHc-CCCCCEEee
Confidence 43 256666664 456788874
No 249
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=26.62 E-value=1.5e+02 Score=30.48 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=47.8
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC---
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG--- 295 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG--- 295 (533)
.+|+|+.-+....-. ++++.|++ .|+++.+-.. . .+. + ......++|.||..||
T Consensus 4 ~kvaVl~~pG~n~d~----e~~~Al~~-aG~~v~~v~~-~-~~~--------------~--~~~~l~~~DgLvipGGfs~ 60 (261)
T PRK01175 4 IRVAVLRMEGTNCED----ETVKAFRR-LGVEPEYVHI-N-DLA--------------A--ERKSVSDYDCLVIPGGFSA 60 (261)
T ss_pred CEEEEEeCCCCCCHH----HHHHHHHH-CCCcEEEEee-c-ccc--------------c--cccchhhCCEEEECCCCCc
Confidence 478999887664332 44566654 4555443110 0 000 0 0011356999999999
Q ss_pred -c----h-----H----HHHHHHhcCCCCCcEEEEeCC-----CCccC
Q 009486 296 -D----G-----T----VLWAASIFKGPVPPIVPFSLG-----SLGFM 324 (533)
Q Consensus 296 -D----G-----T----lL~aar~~~~~~~PILGIN~G-----~LGFL 324 (533)
| | . +..+.+.+...+.||+||-.| .+|.|
T Consensus 61 gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlL 108 (261)
T PRK01175 61 GDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLL 108 (261)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCC
Confidence 3 1 1 124456666678999999977 36766
No 250
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.59 E-value=1e+02 Score=29.54 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCccEEEEEeCchH-----------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGT-----------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGT-----------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-||..+ +....+.+...+.|||||-.|.
T Consensus 35 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~ 81 (198)
T cd01748 35 LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGM 81 (198)
T ss_pred ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 35788888554211 2334444444578999998884
No 251
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=26.49 E-value=3.1e+02 Score=26.63 Aligned_cols=84 Identities=14% Similarity=0.008 Sum_probs=50.5
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-chhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-RVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 297 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~-~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDG 297 (533)
+|++|.+..++-..++...+.+.+.+ .|+.+.+-. ..... ..+ ...+. -...++|-+|..+.|-
T Consensus 1 ~i~~v~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~-~~~------------~~~i~~l~~~~vDgiIi~~~~~ 66 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKE-LGVDVEFVVPQQGTV-NAQ------------LRMLEDLIAEGVDGIAISPIDP 66 (271)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHH-cCCeEEEeCCCCCCH-HHH------------HHHHHHHHhcCCCEEEEecCCh
Confidence 47888877778788888888888876 577776531 11000 000 00111 1235799999998773
Q ss_pred H-HHHHHHhcCCCCCcEEEEeC
Q 009486 298 T-VLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 298 T-lL~aar~~~~~~~PILGIN~ 318 (533)
. .....+.+.. ++|++-++.
T Consensus 67 ~~~~~~l~~~~~-~ipvV~~~~ 87 (271)
T cd06314 67 KAVIPALNKAAA-GIKLITTDS 87 (271)
T ss_pred hHhHHHHHHHhc-CCCEEEecC
Confidence 3 2233344445 789999875
No 252
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.12 E-value=4.3e+02 Score=26.24 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=50.7
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLG 294 (533)
+.++|+++.. ..++-..++...+.+.+++ .|+.+.+...-... ... ..-+.. ....+|.+|+.+
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~-~G~~~~~~~~~~d~-~~~------------~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADK-LGYNLVVLDSQNNP-AKE------------LANVQDLTVRGTKILLINP 90 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHH-cCCeEEEecCCCCH-HHH------------HHHHHHHHHcCCCEEEEcC
Confidence 4567888774 4667777777888888876 57887663211000 000 011111 234689787766
Q ss_pred CchHH-HHHHHhcCCCCCcEEEEeC
Q 009486 295 GDGTV-LWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 295 GDGTl-L~aar~~~~~~~PILGIN~ 318 (533)
.|-.. ......+...++|++-++.
T Consensus 91 ~~~~~~~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 91 TDSDAVGNAVKMANQANIPVITLDR 115 (295)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEcc
Confidence 55332 3444555556789999885
No 253
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=26.02 E-value=1.1e+02 Score=22.25 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHhHHH
Q 009486 57 LIEFSEALRTVAKALRRAAEGKAAAQA 83 (533)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (533)
+.-|+..||.+||-...| ||++-|-
T Consensus 3 ~s~~~kilrsiak~fkgv--gk~rkqf 27 (37)
T PF08025_consen 3 FSGFSKILRSIAKFFKGV--GKVRKQF 27 (37)
T ss_pred ccHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 456899999999999887 7777764
No 254
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.92 E-value=3.8e+02 Score=25.81 Aligned_cols=98 Identities=9% Similarity=0.093 Sum_probs=53.6
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDGT 298 (533)
|++|.. ..++-...+...+.+.+++ .|+++.+.......- .. ...+. .+..++|.+|+.+.|..
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~-~~------------~~~i~~~~~~~~dgiii~~~~~~ 67 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKA-LGYDAVELSAENSAK-KE------------LENLRTAIDKGVSGIIISPTNSS 67 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHh-cCCeEEEecCCCCHH-HH------------HHHHHHHHhcCCCEEEEcCCchh
Confidence 555553 4566666777777777765 577776632211000 00 00111 12467999998887754
Q ss_pred H-HHHHHhcCCCCCcEEEEeCCCC--ccCccCCcchH
Q 009486 299 V-LWAASIFKGPVPPIVPFSLGSL--GFMTPFHSEHY 332 (533)
Q Consensus 299 l-L~aar~~~~~~~PILGIN~G~L--GFLt~~~~ed~ 332 (533)
. ....+.+...++|++-++...- .++.-+..++.
T Consensus 68 ~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~v~~d~~ 104 (277)
T cd06319 68 AAVTLLKLAAQAKIPVVIADIGAEGGDYVSYIKSDNY 104 (277)
T ss_pred hhHHHHHHHHHCCCCEEEEecCCCCCceEEEEeeccH
Confidence 2 3344555566899998886421 23333444543
No 255
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=25.60 E-value=55 Score=30.84 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=27.7
Q ss_pred CccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEeCCCC
Q 009486 286 KVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGSL 321 (533)
Q Consensus 286 ~~DlVIvLGGDGT--------lL~aar~~~~~~~PILGIN~G~L 321 (533)
++|.+|+.||.|+ ++...+.+.....||.+|..|..
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~ 119 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ 119 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHH
Confidence 5799999999664 44555655567889999999863
No 256
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.58 E-value=70 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHh
Q 009486 279 EILLLHTKVDLVVTLGGDGTVLWAASI 305 (533)
Q Consensus 279 ~~~~~~~~~DlVIvLGGDGTlL~aar~ 305 (533)
.+.+...++|+||+-+|-||.|.+.+.
T Consensus 73 sl~e~I~~AdlVIsHAGaGS~letL~l 99 (170)
T KOG3349|consen 73 SLTEDIRSADLVISHAGAGSCLETLRL 99 (170)
T ss_pred cHHHHHhhccEEEecCCcchHHHHHHc
Confidence 344556679999999999999999986
No 257
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=25.35 E-value=2.2e+02 Score=31.64 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=22.7
Q ss_pred EEEEEeCchHHHHHHHhcC--CCCCcEEEEe
Q 009486 289 LVVTLGGDGTVLWAASIFK--GPVPPIVPFS 317 (533)
Q Consensus 289 lVIvLGGDGTlL~aar~~~--~~~~PILGIN 317 (533)
+++.+||-|-+-..+..+. +..+||+||-
T Consensus 219 I~vpVGGGGLiaGIat~vk~~~p~vkIIGVE 249 (457)
T KOG1250|consen 219 IVVPVGGGGLIAGIATGVKRVGPHVKIIGVE 249 (457)
T ss_pred EEEecCCchhHHHHHHHHHHhCCCCceEEEe
Confidence 6777999998888777665 4678999964
No 258
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=25.15 E-value=1.4e+02 Score=34.06 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhh
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT 263 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~ 263 (533)
++++|+|-..- ++.+.++++++. + .|++++-...+++.|..
T Consensus 3 ~~~~aLISVsD-K~~iv~lAk~L~----~-lGfeI~AT~GTak~L~e 43 (513)
T PRK00881 3 MIKRALISVSD-KTGIVEFAKALV----E-LGVEILSTGGTAKLLAE 43 (513)
T ss_pred CcCEEEEEEeC-cccHHHHHHHHH----H-CCCEEEEcchHHHHHHH
Confidence 45777777764 777665555544 3 47777766666665543
No 259
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.13 E-value=69 Score=28.90 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=29.6
Q ss_pred CccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC
Q 009486 286 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G 319 (533)
.+|.+|.+.|||-++-+++.+...+..|..+...
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 6899999999999999999998877787776654
No 260
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=24.68 E-value=53 Score=32.93 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=27.2
Q ss_pred CCccEEEEEeCchH---------------HHHHHHhcCCCCCcEEEEeCC
Q 009486 285 TKVDLVVTLGGDGT---------------VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 285 ~~~DlVIvLGGDGT---------------lL~aar~~~~~~~PILGIN~G 319 (533)
.++|.||.-||-.. ++...+.+...+.||+||-.|
T Consensus 42 ~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G 91 (238)
T cd01740 42 DDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNG 91 (238)
T ss_pred hhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcH
Confidence 46899999999431 556677777788999999976
No 261
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.29 E-value=4.3e+02 Score=26.14 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=49.3
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDGT 298 (533)
|+|+.. ..++-...+...+.+-+.+ .|+.+.+-...... ... ...+. .+..++|-||+.+.|++
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~~~~~~vdgiii~~~~~~ 67 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKE-LGAEVIVQNANGDP-AKQ------------ISQIENMIAKGVDVLVIAPVDGE 67 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCCCH-HHH------------HHHHHHHHHcCCCEEEEecCChh
Confidence 566663 4566666667777777765 67887764321100 000 01111 23457999999998876
Q ss_pred H-HHHHHhcCCCCCcEEEEeCC
Q 009486 299 V-LWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 299 l-L~aar~~~~~~~PILGIN~G 319 (533)
. -...+.+...++||+.++..
T Consensus 68 ~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 68 ALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred hHHHHHHHHHHCCCCEEEECCC
Confidence 3 23334444567899999864
No 262
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.27 E-value=3.9e+02 Score=25.46 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=47.8
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDGT 298 (533)
|++|.+ ..++-...+...+.+.+++ .|+.+++-..-... ... ..-+.. ...++|.+|+.+.+..
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~~~~~~vdgiii~~~~~~ 67 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEE-AGYTVFLANSGEDV-ERQ------------EQLLSTMLEHGVAGIILCPAAGT 67 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHH-cCCeEEEecCCCCh-HHH------------HHHHHHHHHcCCCEEEEeCCCCc
Confidence 566664 3455555566667777765 56776653211000 000 000111 2357899999987765
Q ss_pred HHHHHHhcCCCCCcEEEEeC
Q 009486 299 VLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~ 318 (533)
...+.+.+...++|++-++.
T Consensus 68 ~~~~~~~~~~~~ipvV~~~~ 87 (268)
T cd06289 68 SPDLLKRLAESGIPVVLVAR 87 (268)
T ss_pred cHHHHHHHHhcCCCEEEEec
Confidence 44556666667889998874
No 263
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=24.17 E-value=3.6e+02 Score=26.10 Aligned_cols=86 Identities=8% Similarity=0.050 Sum_probs=48.0
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDGT 298 (533)
||++.. ..++-...+...+.+.+.+..|+.+.+-...... ..+ ...+. .+..++|.||+.+.+-+
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~------------~~~i~~~~~~~vdgiii~~~~~~ 68 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPDVELIIADAADDN-SKQ------------VADIENFIRQGVDLLIISPNEAA 68 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCH-HHH------------HHHHHHHHHhCCCEEEEecCchh
Confidence 566653 4556666777888888876447777663211000 000 00111 12457999999987744
Q ss_pred HH-HHHHhcCCCCCcEEEEeCC
Q 009486 299 VL-WAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 299 lL-~aar~~~~~~~PILGIN~G 319 (533)
.+ ...+.+...++|++-++..
T Consensus 69 ~~~~~~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 69 PLTPVVEEAYRAGIPVILLDRK 90 (270)
T ss_pred hchHHHHHHHHCCCCEEEeCCC
Confidence 22 2223333467899998853
No 264
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=24.16 E-value=1.1e+02 Score=32.97 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=54.3
Q ss_pred EcCCCCchHHH--hccCCCCCCCCCCceEEE-eeCCCCCCCCCeee----CCCCEEEEEeccCCCCCEEEEEcCCc--cc
Q 009486 409 LSTTSGSTAYS--LAAGGSMVHPQVPGILFT-PICPHSLSFRPLIL----PEHVTLRVQIPFNSRSPAWASFDGKD--RK 479 (533)
Q Consensus 409 VSTPTGSTAYs--LSAGGPIv~P~v~aiviT-PIcPhsLs~RPlVl----p~~~~I~I~v~~~~r~~a~vsiDG~~--~~ 479 (533)
|.+|-|-|.|- |.+|..++--+.++-.-+ ++-=-....|||++ ..+..+.+-+. +.+.-.++.=||.. +.
T Consensus 236 v~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQ-naetIrlv~~dG~~vsVt 314 (344)
T PRK02290 236 VRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQ-NAETIRLVTPDGKPVSVV 314 (344)
T ss_pred EEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEe-cCcEEEEECCCCCEeeee
Confidence 77899999996 888988765444332221 22223446789875 24566666553 33332356667874 57
Q ss_pred ccCCCCEEEEEecC
Q 009486 480 QLAPGDALVCSMAP 493 (533)
Q Consensus 480 ~L~~Gd~I~I~~S~ 493 (533)
.|++||+|.++...
T Consensus 315 ~Lk~GD~VL~~~~~ 328 (344)
T PRK02290 315 DLKPGDEVLGYLEE 328 (344)
T ss_pred ecCCCCEEEEEecC
Confidence 99999999998765
No 265
>PF15431 TMEM190: Transmembrane protein 190
Probab=23.99 E-value=41 Score=30.84 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=29.8
Q ss_pred CCcccccccccccccccccCccchhhhcccccCCCccchhcccccceeEEEEecccC
Q 009486 126 SQPVLLNQEREHSNRACLEHGICSHEVLQDAKDVDSNMVNNKIMKKASFKLSWRCKG 182 (533)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 182 (533)
-|-..+++.-----+||-++|+|-||-. |..+.+|--..|.|-|.|
T Consensus 25 GQAAie~PnLCLrLrCCYrdGvCYhQRp-----------DEnmrrKHmWaL~wtC~g 70 (134)
T PF15431_consen 25 GQAAIENPNLCLRLRCCYRDGVCYHQRP-----------DENMRRKHMWALGWTCGG 70 (134)
T ss_pred CccccCCCcceeeeeeecccceeeccCc-----------chhHHHHHHHHHHHHHHh
Confidence 3333333333333469999999999853 235666777778888875
No 266
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=23.93 E-value=4.2e+02 Score=26.50 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=50.1
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGD 296 (533)
+|+++.. ..++-...+...+.+.+.+ .|+.+.+ ....... ... ...+.. +..++|-||+.+.+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g~~v~~~~~~~~d~-~~~------------~~~i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LGVDAIYVGPTTADA-AGQ------------VQIIEDLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hCCeEEEECCCCCCH-HHH------------HHHHHHHHhcCCCEEEEecCC
Confidence 4666664 5677777777778888866 5777764 2211100 000 011111 23579999999887
Q ss_pred hHHH-HHHHhcCCCCCcEEEEeCC
Q 009486 297 GTVL-WAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 297 GTlL-~aar~~~~~~~PILGIN~G 319 (533)
-+.+ ...+.+...++|++-++..
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 67 PDALEPVLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5522 3334455668899998853
No 267
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=23.79 E-value=2.6e+02 Score=25.10 Aligned_cols=124 Identities=16% Similarity=0.209 Sum_probs=68.5
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHh--cCCeEEEEcc--chhHHhh---hc-C--CcccccccccchHHHhhh
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLRE--QKKLNIYVEP--RVRAELL---TE-S--SYFSFVQTWKDEKEILLL 283 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e--~~gi~V~ve~--~~a~~l~---~~-~--~~~~~i~~~~~~~~~~~~ 283 (533)
....+..|+.+.+.....-...+-+++..+.+ ...+.+.+-- .....+. .. . ....++... ...++..+
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~ 89 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYV-PDDELDEL 89 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESH-SHHHHHHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccc-cccccccc
Confidence 34556778888887766656666666666643 3566665543 1111111 10 0 111122211 13456677
Q ss_pred CCCccEEEEE----eCchHHHHHHHhcCCCCCcEEEEeCC---------CCccCcc-CCcchHHHHHHHHHcC
Q 009486 284 HTKVDLVVTL----GGDGTVLWAASIFKGPVPPIVPFSLG---------SLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 284 ~~~~DlVIvL----GGDGTlL~aar~~~~~~~PILGIN~G---------~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
...+|++|.. |.=.+++.|.. .+.|++.-+.| .-|++.+ .+++++.+.|..+++.
T Consensus 90 ~~~~di~v~~s~~e~~~~~~~Ea~~----~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 90 YKSSDIFVSPSRNEGFGLSLLEAMA----CGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHTSEEEE-BSSBSS-HHHHHHHH----TT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred cccceeccccccccccccccccccc----cccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 7789999988 45456666543 36788887754 4567665 4467777888777653
No 268
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=23.62 E-value=54 Score=29.50 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=25.9
Q ss_pred CccEEEEEeCchH---------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 286 KVDLVVTLGGDGT---------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 286 ~~DlVIvLGGDGT---------lL~aar~~~~~~~PILGIN~G~ 320 (533)
++|.+|+.||.+. ++...+.+.....||.+|-.|.
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 5899999999775 3344555555678999998774
No 269
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.46 E-value=3.8e+02 Score=25.72 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=50.1
Q ss_pred EEEEEc-C-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 009486 221 VVILTK-P-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 297 (533)
Q Consensus 221 VlIV~K-~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDG 297 (533)
|+++.. . +++-...+...+..++.+ .|+.+.+...-... ... ...+. ....++|.+|+.+.|.
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEE-DGVEVIVLDANGDV-ARQ------------AAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCcCH-HHH------------HHHHHHHHHcCCCEEEEecCCc
Confidence 555553 3 567777777888888876 67887764321100 000 00011 1235799999998875
Q ss_pred HH-HHHHHhcCCCCCcEEEEeC
Q 009486 298 TV-LWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 298 Tl-L~aar~~~~~~~PILGIN~ 318 (533)
+. ...++.+...++|++.+|.
T Consensus 68 ~~~~~~l~~~~~~~iPvV~~~~ 89 (275)
T cd06317 68 QAYIPGLRKAKQAGIPVVITNS 89 (275)
T ss_pred cccHHHHHHHHHCCCcEEEeCC
Confidence 43 3444555667899998875
No 270
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=23.10 E-value=55 Score=30.08 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=26.3
Q ss_pred CccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 286 KVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 286 ~~DlVIvLGGDGT--------lL~aar~~~~~~~PILGIN~G~ 320 (533)
++|.|++.||.|. ++...+.+.....||.+|-.|.
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~ 102 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP 102 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 5899999999763 3344455556778999999886
No 271
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=22.86 E-value=5.7e+02 Score=25.38 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=39.7
Q ss_pred hHHHhhhCCCccEEEEEeC---c-hHHHHHHHhcCCCCCcEEEEeCC---------CCccCccC-CcchHHHHHHHHHcC
Q 009486 277 EKEILLLHTKVDLVVTLGG---D-GTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 277 ~~~~~~~~~~~DlVIvLGG---D-GTlL~aar~~~~~~~PILGIN~G---------~LGFLt~~-~~ed~~~~L~~ll~G 342 (533)
...+..+...+|+++.--. - .+++-|.. .+.||++.+.| ..||+.+. +++++.++|..+++.
T Consensus 255 ~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~----~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 255 DESLALIYSAADVFVVPSLQENFPNTAIEALA----CGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD 330 (365)
T ss_pred HHHHHHHHHhCCEEEeccccccccHHHHHHHh----cCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 3445566778899987422 2 34444433 46799987764 25666553 477788888887754
No 272
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.73 E-value=1.3e+02 Score=34.14 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=22.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhh
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT 263 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~ 263 (533)
+++|-.. +++.+.++++++. + .|++++-...+++.|..
T Consensus 2 raLISVs-DK~~iv~lAk~L~----~-lGfeIiATgGTak~L~e 39 (511)
T TIGR00355 2 RALLSVS-DKTGIVEFAQGLV----E-RGVELLSTGGTAKLLAE 39 (511)
T ss_pred EEEEEEe-CcccHHHHHHHHH----H-CCCEEEEechHHHHHHH
Confidence 4555544 3666665555544 3 57777776666665543
No 273
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=22.49 E-value=3.7e+02 Score=26.06 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=37.7
Q ss_pred HhhhCCCccEEEEEeCc----hHHHHHHHhcCCCCCcEEEEeCCCC-------ccCccC-CcchHHHHHHHHHcC
Q 009486 280 ILLLHTKVDLVVTLGGD----GTVLWAASIFKGPVPPIVPFSLGSL-------GFMTPF-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 280 ~~~~~~~~DlVIvLGGD----GTlL~aar~~~~~~~PILGIN~G~L-------GFLt~~-~~ed~~~~L~~ll~G 342 (533)
+..+...+|++|.-... ++++-|.. .+.||+.-+.|.. |++.+. +++++.+.+..+++.
T Consensus 262 ~~~~~~~adi~v~ps~~e~~~~~~~Ea~a----~g~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 262 VPALLNALDVFVLSSLSEGFPNVLLEAMA----CGLPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred HHHHHHhCCEEEeCCccccCCcHHHHHHh----cCCCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHHHHHhC
Confidence 44566788988864433 35555543 3578988887643 555443 466777888887764
No 274
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=22.35 E-value=3.9e+02 Score=25.63 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHhhhCCCccEEEEEe----CchHHHHHHHhcCCCCCcEEEEeC---------CCCccCccCC-cchHHHHHHHHHcC
Q 009486 278 KEILLLHTKVDLVVTLG----GDGTVLWAASIFKGPVPPIVPFSL---------GSLGFMTPFH-SEHYKDYLDSVLRG 342 (533)
Q Consensus 278 ~~~~~~~~~~DlVIvLG----GDGTlL~aar~~~~~~~PILGIN~---------G~LGFLt~~~-~ed~~~~L~~ll~G 342 (533)
.++.++...+|++|... .-++++-|.. .+.||+.-+. |..|++.+.. ++++.+.|..+++.
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~----~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGLVLLEAMA----AGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccchHHHHHH----cCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 45666778899998643 3345555553 3678988774 4567766654 77888888887654
No 275
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.35 E-value=1.4e+02 Score=28.96 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=23.2
Q ss_pred CCccEEEEEeC---chH--------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGG---DGT--------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGG---DGT--------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-|| |.+ ++...+.+.....|||||-+|.
T Consensus 36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~ 82 (205)
T PRK13141 36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGM 82 (205)
T ss_pred ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 35898887664 222 3344444444678999999885
No 276
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.28 E-value=4.3e+02 Score=26.84 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=48.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGD 296 (533)
.++|+|++-. .+-.......+.+.+++ .|+++..+..+.. ....+. ..+.. ...++|.|++.|..
T Consensus 135 ~~~v~ii~~~-~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~----~~~d~~--------~~v~~l~~~~~d~v~~~~~~ 200 (340)
T cd06349 135 FKKVAILSVN-TDWGRTSADIFVKAAEK-LGGQVVAHEEYVP----GEKDFR--------PTITRLRDANPDAIILISYY 200 (340)
T ss_pred CcEEEEEecC-ChHhHHHHHHHHHHHHH-cCCEEEEEEEeCC----CCCcHH--------HHHHHHHhcCCCEEEEcccc
Confidence 4789999854 44566677788888865 5777664332111 011111 11122 24578999888776
Q ss_pred hHHHHHHHhcC--CCCCcEEEE
Q 009486 297 GTVLWAASIFK--GPVPPIVPF 316 (533)
Q Consensus 297 GTlL~aar~~~--~~~~PILGI 316 (533)
+++....+.+. +..+|+++.
T Consensus 201 ~~~~~~~~~~~~~g~~~~~~~~ 222 (340)
T cd06349 201 NDGAPIARQARAVGLDIPVVAS 222 (340)
T ss_pred chHHHHHHHHHHcCCCCcEEcc
Confidence 65555555443 345677763
No 277
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=21.86 E-value=80 Score=39.18 Aligned_cols=42 Identities=31% Similarity=0.590 Sum_probs=33.4
Q ss_pred CCCCCchhhhhh-HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 009486 50 VHGSDDHLIEFS-EALRTVAKALRRAAEGKAAAQAEAAEWKRRFELERA 97 (533)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (533)
+..|.+||-||+ |-|||..=|.|.+. ..|=++|+.+|.-..+
T Consensus 578 ~e~T~~Hl~~yA~eGLRTLc~A~r~l~------e~eY~~w~~~~~~A~t 620 (1151)
T KOG0206|consen 578 REKTQEHLEEYATEGLRTLCLAYRELD------EEEYEEWNERYNEAKT 620 (1151)
T ss_pred HHHHHHHHHHHHhhhhhHhhhhhhccC------HHHHHHHHHHHHHHHh
Confidence 455678999997 56999999998865 4689999999954433
No 278
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=21.79 E-value=1.6e+02 Score=32.84 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCccCc--cCCcchHHHHHHHHHcCCceEEEEeeee
Q 009486 319 GSLGFMT--PFHSEHYKDYLDSVLRGPISITLRNRLQ 353 (533)
Q Consensus 319 G~LGFLt--~~~~ed~~~~L~~ll~G~y~ie~R~rL~ 353 (533)
|.-|.+. ++++++++++|+..+.+.|.+++|.+..
T Consensus 350 gg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~ 386 (445)
T PF14403_consen 350 GGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRPP 386 (445)
T ss_pred CCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 4444443 4778999999999999999999988764
No 279
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=21.78 E-value=49 Score=33.13 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCCCchHHHhccCCCCCCCCCCc
Q 009486 411 TTSGSTAYSLAAGGSMVHPQVPG 433 (533)
Q Consensus 411 TPTGSTAYsLSAGGPIv~P~v~a 433 (533)
=+|||+||-|+.|=|.+|+..+-
T Consensus 113 gv~GS~g~qlaTGl~~l~~~SDL 135 (207)
T PRK01293 113 GVTGSAGFELATGIPVLHADSDL 135 (207)
T ss_pred eeehhHHHHHhhCCccccCCCCc
Confidence 38999999999999999998764
No 280
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=21.75 E-value=4.3e+02 Score=25.29 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=48.8
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGDGT 298 (533)
|||+.. ..++-...+...+.+.+.+ .|+.+.+-...... .. . ...+. .....+|-||+.+.|..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~----------~--~~~~~~l~~~~vdgiIi~~~~~~ 67 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASA-AGYSTIIGNSDENP-ET----------E--NRYLDNLLSQRVDGIIVVPHEQS 67 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHH-cCCEEEEEeCCCCH-HH----------H--HHHHHHHHhcCCCEEEEcCCCCC
Confidence 666664 3566666777778887765 57777664211000 00 0 00111 22457999999988765
Q ss_pred HHHHHHhcCCCCCcEEEEeCC
Q 009486 299 VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G 319 (533)
-. ..+.+...++|++-+|..
T Consensus 68 ~~-~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 68 AE-QLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred hH-HHHHHHhCCCCEEEEecc
Confidence 42 345555567899888763
No 281
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=21.71 E-value=6.2e+02 Score=25.56 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
.+.|+++... .++-...+...+.+++.+ .|..+++-..-... ... ...+.. ...++|-||+.+.
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QGRMVFLLQGGKDG-EQL------------AQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cCCEEEEEeCCCCH-HHH------------HHHHHHHHhCCCCEEEEeCC
Confidence 3568888743 455566667778888876 56666653210000 000 001111 2357999999987
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCC-CccCccCCcchH---HHHHHHHHc
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGS-LGFMTPFHSEHY---KDYLDSVLR 341 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~-LGFLt~~~~ed~---~~~L~~ll~ 341 (533)
+.........+...++|++-++... ..-+.-+..++. ..+.+.+++
T Consensus 130 ~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 179 (342)
T PRK10014 130 AGSSDDLREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIR 179 (342)
T ss_pred CCCcHHHHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHH
Confidence 7543344455556678998887531 111222444443 344555554
No 282
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=21.66 E-value=2.2e+02 Score=29.97 Aligned_cols=40 Identities=8% Similarity=-0.040 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchh
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVR 258 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a 258 (533)
|.+|+||.-.......+...+.++.|++ .|++|.+.+.+.
T Consensus 1 ~~~I~viAPSs~~~~~~~~~~~i~~L~~-~G~~v~~~~~~~ 40 (305)
T PRK11253 1 MSLFHLIAPSGYPIDQAAALRGVQRLTD-AGHQVENVEVIA 40 (305)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHh-CCCEEeeccccc
Confidence 5689999855422223456777888865 689988877654
No 283
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=21.21 E-value=2.9e+02 Score=30.11 Aligned_cols=117 Identities=19% Similarity=0.271 Sum_probs=60.7
Q ss_pred CCEEEEEEcCC--ChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 218 PQTVVILTKPN--SNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~~--~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
.+.|.+|.=-. ...-.+..+.+++-|.+.+.--++. +......+. ++ ..+..|.+-.++- -..++++.|+=|
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~-~n---~~~~~W~PQ~~lL-~hp~v~~fitHg 349 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLP-KN---VLIVKWLPQNDLL-AHPRVKLFITHG 349 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHH-TT---EEEESS--HHHHH-TSTTEEEEEES-
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccccccc-ce---EEEeccccchhhh-hcccceeeeecc
Confidence 45555554211 1223344677888776544422332 221111121 11 1455675433321 135689999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCC-----------CCcc---C--ccCCcchHHHHHHHHHcCC
Q 009486 295 GDGTVLWAASIFKGPVPPIVPFSLG-----------SLGF---M--TPFHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PILGIN~G-----------~LGF---L--t~~~~ed~~~~L~~ll~G~ 343 (533)
|-|+++-|+.. ++|++++-+- ..|+ | .+++.+++.++|..+++++
T Consensus 350 G~~s~~Ea~~~----gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 350 GLNSTQEALYH----GVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp -HHHHHHHHHC----T--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred ccchhhhhhhc----cCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 99999999864 7899998751 1222 2 3466788889999988764
No 284
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=21.12 E-value=2e+02 Score=31.55 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.-.|+++||+.++-..+ .+.+...+-|.+ .+|+|-|-+.+..+- .+..+....++. -.+++|.+|++||
T Consensus 68 ~gaKk~llvTDkni~~~-~~~~~a~~~L~~-~~I~~~vyD~v~~eP--------tv~s~~~alefa-k~~~fDs~vaiGG 136 (465)
T KOG3857|consen 68 LGAKKTLLVTDKNIAKL-GLVKVAQDSLEE-NGINVEVYDKVQPEP--------TVGSVTAALEFA-KKKNFDSFVAIGG 136 (465)
T ss_pred cCccceEEeeCCChhhc-ccHHHHHHHHHH-cCCceEEecCccCCC--------chhhHHHHHHHH-HhcccceEEEEcC
Confidence 44688999998775433 345566666654 788887765543211 011111111111 1367999999999
Q ss_pred chHHHHHHH
Q 009486 296 DGTVLWAAS 304 (533)
Q Consensus 296 DGTlL~aar 304 (533)
|....+++
T Consensus 137 -GSa~DtaK 144 (465)
T KOG3857|consen 137 -GSAHDTAK 144 (465)
T ss_pred -cchhhhHH
Confidence 55544443
No 285
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=21.00 E-value=2.4e+02 Score=34.47 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=46.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh---hCCCccEEEEEeC
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL---LHTKVDLVVTLGG 295 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~DlVIvLGG 295 (533)
.+|+||=+.+.= +..|+++|.+..|..+.|-.... + +| .++.. ....+|.||.=||
T Consensus 82 ~~iLlIDnyDSf-----TyNL~~~L~~~~g~~~~Vv~nd~---------~----~~---~~~~~~~~~~~~~d~IVlSPG 140 (918)
T PLN02889 82 VRTLLIDNYDSY-----TYNIYQELSIVNGVPPVVVRNDE---------W----TW---EEVYHYLYEEKAFDNIVISPG 140 (918)
T ss_pred ceEEEEeCCCch-----HHHHHHHHHHhcCCCEEEEeCCC---------C----CH---HHHHhhhhcccCCCEEEECCC
Confidence 379999887753 56788888764355544422100 0 01 11111 1246899999999
Q ss_pred chHH---------HHHHHhcCCCCCcEEEEeCCC
Q 009486 296 DGTV---------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 296 DGTl---------L~aar~~~~~~~PILGIN~G~ 320 (533)
=|+- +.....+ ..+|||||-+|+
T Consensus 141 PG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGh 172 (918)
T PLN02889 141 PGSPTCPADIGICLRLLLEC--RDIPILGVCLGH 172 (918)
T ss_pred CCCccchHHHHHHHHHHHHh--CCCcEEEEcHHH
Confidence 9954 2222222 358999999984
No 286
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=20.99 E-value=4.5e+02 Score=29.13 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=63.1
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccch--hHHhhh--cCCcccccccccchHHHhhhCCCccE
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRV--RAELLT--ESSYFSFVQTWKDEKEILLLHTKVDL 289 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~--a~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~Dl 289 (533)
.+..+.+++++++ ....+...++++-| +.+..-+.... ...+.. ..........+. ...+.++..++|+
T Consensus 278 ~~r~~~~~l~~t~---s~~I~~i~~Lv~~l---Pd~~f~Iga~te~s~kL~~L~~y~nvvly~~~~-~~~l~~ly~~~dl 350 (438)
T TIGR02919 278 DNKYRKQALILTN---SDQIEHLEEIVQAL---PDYHFHIAALTEMSSKLMSLDKYDNVKLYPNIT-TQKIQELYQTCDI 350 (438)
T ss_pred ccCCcccEEEECC---HHHHHHHHHHHHhC---CCcEEEEEecCcccHHHHHHHhcCCcEEECCcC-hHHHHHHHHhccE
Confidence 4556778999993 44455555555444 55554432111 122211 111111111111 1246677888999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeC--CC-----CccCccCC-cchHHHHHHHHHc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSL--GS-----LGFMTPFH-SEHYKDYLDSVLR 341 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~--G~-----LGFLt~~~-~ed~~~~L~~ll~ 341 (533)
.+.+-=..=+..+...+...+.||+|++. |. -|+|.+.. ++++.+.|..++.
T Consensus 351 yLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g~l~~~~~~~~m~~~i~~lL~ 410 (438)
T TIGR02919 351 YLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEVDQLISKLKDLLN 410 (438)
T ss_pred EEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccCCceecCCCHHHHHHHHHHHhc
Confidence 88875433444444455567899999875 33 26664433 4455555655544
No 287
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.79 E-value=4.7e+02 Score=24.98 Aligned_cols=109 Identities=13% Similarity=-0.007 Sum_probs=57.0
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 009486 221 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~-K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDGT 298 (533)
|+||. ..+++-...+...+.+.+.+ .|+.+.+-..-....... ..-+.. ...++|.+|+.+.+-.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~vdgiii~~~~~~ 68 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAARE-AGYAVTLSMLAEADEEAL------------RAAVRRLLAQRVDGVIVNAPLDD 68 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHH-CCCeEEEEeCCCCchHHH------------HHHHHHHHhcCCCEEEEeCCCCC
Confidence 55665 45667777788888888876 466665522100000000 011111 2357999999887654
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchH---HHHHHHHHcCC
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHY---KDYLDSVLRGP 343 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~---~~~L~~ll~G~ 343 (533)
.. ....+...++|++-++.-.-.-+.-+..++. ..+.+.+.+..
T Consensus 69 ~~-~~~~~~~~~ipvv~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g 115 (264)
T cd01574 69 AD-AALAAAPADVPVVFVDGSPSPRVSTVSVDQEGGARLATEHLLELG 115 (264)
T ss_pred hH-HHHHHHhcCCCEEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHCC
Confidence 44 2333345678999998631111222444443 34455555543
No 288
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.67 E-value=4.3e+02 Score=26.11 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=47.8
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEE-EccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 009486 220 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIY-VEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~-ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGD 296 (533)
+|++|.. .+.+-...+...+.+.+.+ .|+++. +...-... ... ...+. .+..++|.||+.+.|
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~~------------~~~l~~~~~~~~dgiii~~~~ 66 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAK-LGIEVVATTDAQFDP-AKQ------------VADIETTISQKPDIIISIPVD 66 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHH-cCCEEEEecCCCCCH-HHH------------HHHHHHHHHhCCCEEEEcCCC
Confidence 3676664 4556666677778888866 577765 32211000 000 01111 234579999998877
Q ss_pred hHHH-HHHHhcCCCCCcEEEEeC
Q 009486 297 GTVL-WAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL-~aar~~~~~~~PILGIN~ 318 (533)
-+.+ .....+...++||+.++-
T Consensus 67 ~~~~~~~i~~~~~~~iPvV~~~~ 89 (294)
T cd06316 67 PVSTAAAYKKVAEAGIKLVFMDN 89 (294)
T ss_pred chhhhHHHHHHHHcCCcEEEecC
Confidence 5432 233444456789998875
No 289
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=20.63 E-value=1.7e+02 Score=32.35 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH------HHHHHhcCCCC
Q 009486 237 AQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV------LWAASIFKGPV 310 (533)
Q Consensus 237 ~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl------L~aar~~~~~~ 310 (533)
..|+++|.+ .|+.+.+-+.... ..++ +..++|-||.-||=|.. ....+.+. ..
T Consensus 252 ~nIlr~L~~-~G~~v~VvP~~~~-----------------~~ei--~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~ 310 (415)
T PLN02771 252 HNILRRLAS-YGCKITVVPSTWP-----------------ASEA--LKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GK 310 (415)
T ss_pred HHHHHHHHH-cCCeEEEECCCCC-----------------HHHH--hhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hC
Confidence 568888876 5777766443110 1111 12368999999994443 22334333 36
Q ss_pred CcEEEEeCCC
Q 009486 311 PPIVPFSLGS 320 (533)
Q Consensus 311 ~PILGIN~G~ 320 (533)
+|||||=+|+
T Consensus 311 iPIlGICLGh 320 (415)
T PLN02771 311 VPVFGICMGH 320 (415)
T ss_pred CCEEEEcHHH
Confidence 8999999997
No 290
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.60 E-value=1.8e+02 Score=30.77 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.+.++++++.-.-. ..-+.++++.|+++ +.+.+-...++ ...+...-..+.++..++|++|++||
T Consensus 156 ~~~~l~~~tQTTls--~ddt~~Iv~~l~~r~p~~~~~~~~~I------------CyAT~nRQ~Avk~la~~~Dl~iVVG~ 221 (294)
T COG0761 156 LPDKLAFVTQTTLS--VDDTAEIVAALKERFPKIEVPPFNDI------------CYATQNRQDAVKELAPEVDLVIVVGS 221 (294)
T ss_pred CcccEEEEeeeecC--HHHHHHHHHHHHHhCccccCCccccc------------chhhhhHHHHHHHHhhcCCEEEEECC
Confidence 35578888875432 34467788888653 22221111110 11122223456778889999999999
Q ss_pred ch-----HHHHHHHhc
Q 009486 296 DG-----TVLWAASIF 306 (533)
Q Consensus 296 DG-----TlL~aar~~ 306 (533)
=- =|...|+..
T Consensus 222 ~nSSNs~rL~eiA~~~ 237 (294)
T COG0761 222 KNSSNSNRLAEIAKRH 237 (294)
T ss_pred CCCccHHHHHHHHHHh
Confidence 42 355555544
No 291
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=20.52 E-value=4.5e+02 Score=25.37 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=57.8
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHH-hhhCCCccEEEEEeCchH
Q 009486 221 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI-LLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~-K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~DlVIvLGGDGT 298 (533)
|||+. ..+++-...+...+.+++++ .|+.+.+...-.. ...+ ...+ ..+...+|.+|+.++++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vdgii~~~~~~~ 67 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSE-KGYSLLLASTNND-PERE------------RKCLENMLSQGIDGLIIEPTKSA 67 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHH-cCCEEEEEeCCCC-HHHH------------HHHHHHHHHcCCCEEEEeccccc
Confidence 56655 44667677778888888876 5788776422100 0000 0001 123467999999987653
Q ss_pred HH----HHHHhcCCCCCcEEEEeCCCCc-cCccCCcchHH---HHHHHHHc
Q 009486 299 VL----WAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 299 lL----~aar~~~~~~~PILGIN~G~LG-FLt~~~~ed~~---~~L~~ll~ 341 (533)
.. ...+.+...++||+-+|...-+ .+.-+..++.. .+.+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 118 (273)
T cd01541 68 LPNPNIDLYLKLEKLGIPYVFINASYEELNFPSLVLDDEKGGYKATEYLIE 118 (273)
T ss_pred cccccHHHHHHHHHCCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 21 2223334457899999864221 12334455543 33444444
No 292
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.42 E-value=2.2e+02 Score=31.40 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=51.1
Q ss_pred eecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhhh--CCCccE
Q 009486 213 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDL 289 (533)
Q Consensus 213 ~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~--~~~~Dl 289 (533)
.....|++||||+-+..... ..+++-+.++ +.+++++-+..-.. +......+ ..+..+ ..++|+
T Consensus 124 ~lP~~p~~i~vits~~~aa~----~D~~~~~~~r~p~~~~~~~~~~vQG---~~a~~~i~------~al~~~~~~~~~dv 190 (432)
T TIGR00237 124 PLPHFPKRVGVITSQTGAAL----ADILHILKRRDPSLKVVIYPTLVQG---EGAVQSIV------ESIELANTKNECDV 190 (432)
T ss_pred CCCCCCCEEEEEeCCccHHH----HHHHHHHHhhCCCceEEEecccccC---ccHHHHHH------HHHHHhhcCCCCCE
Confidence 33445999999999887655 4555555443 55777775532221 11000000 111111 234799
Q ss_pred EEEEeCchHHH--------HHHHhcCCCCCcEEE
Q 009486 290 VVTLGGDGTVL--------WAASIFKGPVPPIVP 315 (533)
Q Consensus 290 VIvLGGDGTlL--------~aar~~~~~~~PILG 315 (533)
||+.=|=|.+- ..++.+....+||+.
T Consensus 191 iii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 191 LIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred EEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 99887768763 345666677889865
No 293
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=20.11 E-value=2.4e+02 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=25.2
Q ss_pred CCccEEEEEeCchHHHHH----------HHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVLWA----------ASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~a----------ar~~~~~~~PILGIN~G~ 320 (533)
.++|.+|.-||.-+.... .+.+...+.||+||-.|.
T Consensus 34 ~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~ 79 (183)
T cd01749 34 EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGL 79 (183)
T ss_pred ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHH
Confidence 468999999987665532 233334578999998885
No 294
>PF15047 DUF4533: Protein of unknown function (DUF4533)
Probab=20.10 E-value=41 Score=34.12 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=30.4
Q ss_pred cHHHHHHHh----hcCCCCCCCchhhhhhHHHHHHHHHHHHHH
Q 009486 37 SEKAVQEIL----QQTPVHGSDDHLIEFSEALRTVAKALRRAA 75 (533)
Q Consensus 37 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (533)
.=|+.|+-| -+.||++.-|||.||-.||+.+-.+|..+-
T Consensus 179 ~lkklq~al~~~~~~~~ies~ad~Leq~v~am~p~le~lqkai 221 (225)
T PF15047_consen 179 ILKKLQDALEREQAKNPIESAADHLEQFVKAMEPYLEILQKAI 221 (225)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555544 368999999999999999999888887653
No 295
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.07 E-value=3.8e+02 Score=26.04 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=31.1
Q ss_pred hhcCCCCCCCchhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHH
Q 009486 45 LQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEW 88 (533)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (533)
||+.-|. |...+|||||-...+--|+--+-++..|.+.|+=
T Consensus 98 l~~~~IN---d~Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~k 138 (158)
T PF02731_consen 98 LQDVEIN---DKFAKLSEALYIADRKAREEVRQRAEMQKELAEK 138 (158)
T ss_pred cCCcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777775 7788999999987777777777777666666653
No 296
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.07 E-value=4.7e+02 Score=27.23 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=49.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGG 295 (533)
..++|++|.- +.+--...+..+.+++++ .|++|..+..+.. ....|. ..+. -...++|.|++.+-
T Consensus 139 ~~~kvaiv~~-~~~~g~~~~~~~~~~~~~-~G~~vv~~~~~~~----~~~D~~--------~~v~~i~~~~pd~V~~~~~ 204 (351)
T cd06334 139 KGKKIALVYH-DSPFGKEPIEALKALAEK-LGFEVVLEPVPPP----GPNDQK--------AQWLQIRRSGPDYVILWGW 204 (351)
T ss_pred CCCeEEEEeC-CCccchhhHHHHHHHHHH-cCCeeeeeccCCC----CcccHH--------HHHHHHHHcCCCEEEEecc
Confidence 4789999986 555556677777788865 6788765433211 011111 1111 12357899987643
Q ss_pred c--hH-HHHHHHhcCCCCCcEEEEeC
Q 009486 296 D--GT-VLWAASIFKGPVPPIVPFSL 318 (533)
Q Consensus 296 D--GT-lL~aar~~~~~~~PILGIN~ 318 (533)
. +. |++.++.. +..+|+++.+.
T Consensus 205 ~~~~~~~~~~~~~~-G~~~~~~~~~~ 229 (351)
T cd06334 205 GVMNPVAIKEAKRV-GLDDKFIGNWW 229 (351)
T ss_pred cchHHHHHHHHHHc-CCCceEEEeec
Confidence 3 22 45566655 34667776443
No 297
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=20.07 E-value=1.1e+02 Score=31.35 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=31.1
Q ss_pred EEecCEEE-EcCCCCchHHHhccCCCCCCCCCCceEEE-eeCCCCCCCCCeeeCCCCEEEE
Q 009486 401 CVQGDGLI-LSTTSGSTAYSLAAGGSMVHPQVPGILFT-PICPHSLSFRPLILPEHVTLRV 459 (533)
Q Consensus 401 ~~rgDGLI-VSTPTGSTAYsLSAGGPIv~P~v~aiviT-PIcPhsLs~RPlVlp~~~~I~I 459 (533)
..++||.+ |-+|.||-||....+ -=|.+ .. ++| -=.|..-..-||.+|+..+|+|
T Consensus 81 aiq~DGwlaVq~~dG~EaYTRnG~-~qI~a--~g-~lTiqg~pViG~ggpI~vPp~~~v~I 137 (251)
T COG4787 81 AIQGDGWLAVQDADGSEAYTRNGN-IQIDA--TG-QLTIQGHPVIGEGGPITVPPGAKVTI 137 (251)
T ss_pred EEccCceEEEEcCCCcchheecCc-eEECc--cc-ceecCCCeeecCCCccccCCCceEEE
Confidence 34567754 889999999997542 11222 12 111 1123333456777777776665
No 298
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=20.06 E-value=75 Score=29.77 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGT--------lL~aar~~~~~~~PILGIN~G~ 320 (533)
..++|++|+.||+++ ++...+.+.....+|.+|-.|.
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~ 106 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGA 106 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHH
Confidence 357899999999876 4556666666788999998774
Done!