Query 009486
Match_columns 533
No_of_seqs 258 out of 1567
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfn_A NAD kinase; structural 100.0 2.4E-76 8.1E-81 615.3 26.4 309 210-519 30-362 (365)
2 3afo_A NADH kinase POS5; alpha 100.0 3.1E-70 1.1E-74 573.8 31.2 328 191-525 12-381 (388)
3 1z0s_A Probable inorganic poly 100.0 2.7E-65 9.2E-70 515.5 22.7 247 220-519 31-277 (278)
4 1u0t_A Inorganic polyphosphate 100.0 1.5E-61 5.1E-66 491.8 27.7 291 217-519 3-300 (307)
5 2an1_A Putative kinase; struct 100.0 1.4E-60 4.8E-65 478.4 27.7 287 217-521 4-290 (292)
6 2i2c_A Probable inorganic poly 100.0 1.5E-58 5.3E-63 462.4 30.6 259 220-522 2-267 (272)
7 1yt5_A Inorganic polyphosphate 100.0 7.9E-58 2.7E-62 454.1 23.4 255 220-522 2-257 (258)
8 2qv7_A Diacylglycerol kinase D 99.9 1.2E-23 4.1E-28 214.9 11.5 251 218-500 24-315 (337)
9 2bon_A Lipid kinase; DAG kinas 99.8 5.9E-21 2E-25 195.0 5.2 257 218-510 29-324 (332)
10 3s40_A Diacylglycerol kinase; 98.9 1.6E-07 5.3E-12 94.7 21.9 117 215-346 5-127 (304)
11 3l7n_A Putative uncharacterize 86.8 0.31 1E-05 46.9 2.7 78 220-320 2-94 (236)
12 1o2d_A Alcohol dehydrogenase, 86.1 2 6.7E-05 44.2 8.5 88 219-318 41-148 (371)
13 4a3s_A 6-phosphofructokinase; 86.0 0.35 1.2E-05 49.4 2.9 119 218-340 1-154 (319)
14 1vlj_A NADH-dependent butanol 86.0 1.6 5.3E-05 45.5 7.8 87 218-318 43-151 (407)
15 1zxx_A 6-phosphofructokinase; 84.2 0.56 1.9E-05 48.0 3.3 119 218-340 1-154 (319)
16 1pfk_A Phosphofructokinase; tr 84.0 0.58 2E-05 47.9 3.3 119 218-340 2-155 (320)
17 3hno_A Pyrophosphate-dependent 83.0 0.63 2.2E-05 49.3 3.3 43 285-327 103-160 (419)
18 3bfj_A 1,3-propanediol oxidore 82.8 2.1 7.2E-05 44.0 7.0 89 218-318 33-142 (387)
19 3uhj_A Probable glycerol dehyd 78.6 2.6 8.9E-05 43.8 6.0 85 219-318 53-138 (387)
20 2hig_A 6-phospho-1-fructokinas 78.5 1.1 3.9E-05 48.3 3.4 135 204-340 83-256 (487)
21 1oj7_A Hypothetical oxidoreduc 78.3 3.4 0.00011 42.9 6.8 87 219-318 51-159 (408)
22 1rrm_A Lactaldehyde reductase; 78.0 6.2 0.00021 40.4 8.6 87 218-318 31-140 (386)
23 1ta9_A Glycerol dehydrogenase; 77.9 3.7 0.00013 43.6 7.1 85 219-318 92-177 (450)
24 3ce9_A Glycerol dehydrogenase; 77.1 5.9 0.0002 40.1 8.1 85 218-318 34-120 (354)
25 2f48_A Diphosphate--fructose-6 76.7 1.1 3.8E-05 49.1 2.7 123 215-339 69-234 (555)
26 3ox4_A Alcohol dehydrogenase 2 75.7 3.1 0.0001 43.0 5.6 87 218-318 31-138 (383)
27 2gru_A 2-deoxy-scyllo-inosose 75.6 7 0.00024 40.1 8.2 91 218-318 34-128 (368)
28 3hdv_A Response regulator; PSI 75.5 32 0.0011 28.1 11.4 106 217-345 6-130 (136)
29 3okf_A 3-dehydroquinate syntha 75.1 7.7 0.00026 40.6 8.5 91 217-318 61-157 (390)
30 3hl0_A Maleylacetate reductase 75.1 3.7 0.00013 42.1 5.9 86 218-319 34-120 (353)
31 3o8l_A 6-phosphofructokinase, 73.8 2.1 7E-05 48.7 3.9 127 215-344 12-197 (762)
32 3jzd_A Iron-containing alcohol 73.2 4.5 0.00015 41.5 6.1 85 218-318 36-121 (358)
33 3fij_A LIN1909 protein; 11172J 72.7 2.8 9.7E-05 40.6 4.2 82 220-320 6-118 (254)
34 2o6l_A UDP-glucuronosyltransfe 72.5 5 0.00017 35.2 5.5 54 285-342 85-154 (170)
35 1jq5_A Glycerol dehydrogenase; 72.2 4.1 0.00014 41.5 5.5 86 219-318 32-118 (370)
36 1xah_A Sadhqs, 3-dehydroquinat 72.2 3.6 0.00012 41.9 5.0 86 219-318 32-124 (354)
37 3lkv_A Uncharacterized conserv 70.4 9.6 0.00033 37.2 7.5 112 216-343 138-261 (302)
38 3m3p_A Glutamine amido transfe 67.4 1.7 5.8E-05 42.6 1.3 80 218-320 3-92 (250)
39 3qbe_A 3-dehydroquinate syntha 66.8 11 0.00039 38.9 7.4 88 219-318 44-137 (368)
40 3o8l_A 6-phosphofructokinase, 66.7 2.7 9.2E-05 47.8 2.9 123 216-341 398-558 (762)
41 3opy_B 6-phosphofructo-1-kinas 64.7 3 0.0001 48.4 2.8 122 216-340 569-730 (941)
42 3o8o_B 6-phosphofructokinase s 64.6 2.7 9.3E-05 47.8 2.4 121 217-340 392-552 (766)
43 3opy_A 6-phosphofructo-1-kinas 64.0 3.1 0.00011 48.4 2.7 121 217-340 597-756 (989)
44 3o8o_A 6-phosphofructokinase s 64.0 2.9 0.0001 47.7 2.5 122 216-340 391-551 (787)
45 3otg_A CALG1; calicheamicin, T 63.7 22 0.00074 35.1 8.6 114 220-342 244-376 (412)
46 1ujn_A Dehydroquinate synthase 62.8 14 0.00049 37.5 7.2 87 218-318 28-118 (348)
47 3gt7_A Sensor protein; structu 62.2 62 0.0021 27.3 10.3 105 216-344 5-129 (154)
48 1i1q_B Anthranilate synthase c 61.7 9.8 0.00033 34.9 5.3 77 220-320 2-86 (192)
49 2pln_A HP1043, response regula 61.2 66 0.0022 26.2 10.7 105 211-342 11-133 (137)
50 3o8o_A 6-phosphofructokinase s 60.0 5.6 0.00019 45.4 3.9 121 216-339 3-182 (787)
51 3lua_A Response regulator rece 59.8 70 0.0024 26.1 10.4 105 217-345 3-130 (140)
52 3l49_A ABC sugar (ribose) tran 58.7 77 0.0026 29.4 11.1 112 216-341 3-120 (291)
53 1sg6_A Pentafunctional AROM po 58.3 9.9 0.00034 39.3 5.1 30 288-318 107-139 (393)
54 3lft_A Uncharacterized protein 58.0 61 0.0021 30.7 10.4 110 217-343 132-254 (295)
55 1qdl_B Protein (anthranilate s 57.6 16 0.00055 33.5 6.0 75 221-320 4-87 (195)
56 3opy_A 6-phosphofructo-1-kinas 57.5 5.5 0.00019 46.4 3.3 125 216-343 208-391 (989)
57 2nv0_A Glutamine amidotransfer 56.7 16 0.00055 33.3 5.8 36 285-320 37-82 (196)
58 3opy_B 6-phosphofructo-1-kinas 56.6 5.9 0.0002 46.0 3.3 124 216-342 179-362 (941)
59 3o8o_B 6-phosphofructokinase s 56.4 6.1 0.00021 44.9 3.4 120 217-339 2-181 (766)
60 2ywj_A Glutamine amidotransfer 55.8 24 0.0008 31.9 6.7 36 285-320 36-78 (186)
61 3ia7_A CALG4; glycosysltransfe 55.5 39 0.0013 33.0 8.7 57 282-342 293-366 (402)
62 3cz5_A Two-component response 53.8 95 0.0033 25.8 11.6 106 217-346 4-129 (153)
63 1q7r_A Predicted amidotransfer 53.8 15 0.00052 34.4 5.2 36 285-320 59-104 (219)
64 3nva_A CTP synthase; rossman f 53.8 13 0.00045 40.6 5.3 38 283-320 347-389 (535)
65 2iss_D Glutamine amidotransfer 53.7 13 0.00045 34.5 4.7 35 286-320 57-101 (208)
66 3eul_A Possible nitrate/nitrit 52.8 98 0.0033 25.7 9.8 61 286-347 61-140 (152)
67 1wl8_A GMP synthase [glutamine 51.9 24 0.00083 32.0 6.1 75 221-320 3-82 (189)
68 4e7p_A Response regulator; DNA 51.7 1E+02 0.0035 25.6 11.9 109 213-345 15-143 (150)
69 3hbm_A UDP-sugar hydrolase; PS 51.6 22 0.00076 35.2 6.2 33 280-317 219-251 (282)
70 2p6p_A Glycosyl transferase; X 51.2 11 0.00037 37.2 3.9 58 281-342 274-347 (384)
71 1o1y_A Conserved hypothetical 50.7 5.1 0.00017 38.5 1.4 80 218-320 12-103 (239)
72 4dad_A Putative pilus assembly 50.6 64 0.0022 26.6 8.2 107 214-343 16-142 (146)
73 4fzr_A SSFS6; structural genom 50.3 15 0.00051 36.5 4.8 59 280-342 294-368 (398)
74 2qh8_A Uncharacterized protein 48.8 38 0.0013 32.4 7.3 110 217-343 139-261 (302)
75 1a9x_B Carbamoyl phosphate syn 47.9 18 0.0006 37.7 5.0 75 219-320 191-271 (379)
76 2w7t_A CTP synthetase, putativ 47.6 13 0.00043 36.6 3.7 37 284-320 65-106 (273)
77 2a9v_A GMP synthase; structura 47.4 7.9 0.00027 36.4 2.1 76 218-320 13-95 (212)
78 1ka9_H Imidazole glycerol phos 46.6 18 0.00061 33.2 4.4 36 285-320 39-85 (200)
79 1tvm_A PTS system, galactitol- 45.7 45 0.0015 28.4 6.5 94 215-341 18-112 (113)
80 3klo_A Transcriptional regulat 45.2 90 0.0031 28.2 8.9 107 217-345 6-132 (225)
81 3tsa_A SPNG, NDP-rhamnosyltran 45.0 23 0.00078 34.9 5.1 58 282-343 282-357 (391)
82 3td9_A Branched chain amino ac 44.7 1.1E+02 0.0037 29.5 10.0 85 217-316 148-236 (366)
83 1kq3_A Glycerol dehydrogenase; 44.7 13 0.00043 38.1 3.2 32 286-318 94-126 (376)
84 3snk_A Response regulator CHEY 44.6 1.2E+02 0.0043 24.4 10.4 100 218-342 14-133 (135)
85 4evq_A Putative ABC transporte 44.5 56 0.0019 31.6 7.8 86 217-316 150-238 (375)
86 3iv7_A Alcohol dehydrogenase I 44.4 11 0.00036 38.9 2.7 33 285-318 87-120 (364)
87 3rsc_A CALG2; TDP, enediyne, s 43.6 57 0.0019 32.3 7.9 57 282-342 309-381 (415)
88 3f5d_A Protein YDEA; unknow pr 43.0 11 0.00038 35.3 2.4 95 218-320 3-103 (206)
89 1l9x_A Gamma-glutamyl hydrolas 42.5 11 0.00038 37.8 2.4 83 220-320 32-134 (315)
90 3jy6_A Transcriptional regulat 42.0 1.5E+02 0.005 27.4 10.1 110 216-341 5-120 (276)
91 2qr3_A Two-component system re 41.6 1.4E+02 0.0047 24.1 11.1 102 218-344 3-128 (140)
92 2yjn_A ERYCIII, glycosyltransf 41.5 18 0.00063 36.7 3.9 57 282-342 331-403 (441)
93 3ewn_A THIJ/PFPI family protei 41.2 25 0.00084 34.2 4.6 96 218-320 23-127 (253)
94 2x7x_A Sensor protein; transfe 40.6 1.5E+02 0.005 28.4 10.1 112 217-341 5-123 (325)
95 3jte_A Response regulator rece 40.5 1.5E+02 0.005 24.1 10.9 102 218-342 3-123 (143)
96 3l6u_A ABC-type sugar transpor 40.2 1.4E+02 0.0048 27.6 9.7 111 217-341 7-125 (293)
97 3kto_A Response regulator rece 39.5 1.5E+02 0.0052 24.0 9.5 102 218-344 6-128 (136)
98 3k4h_A Putative transcriptiona 39.5 1.7E+02 0.0057 27.1 10.0 110 217-341 7-128 (292)
99 1wq6_A AML1-ETO; NHR2, oncopro 38.9 38 0.0013 27.4 4.4 31 63-93 33-66 (72)
100 3h5i_A Response regulator/sens 38.8 1.6E+02 0.0054 24.0 11.1 98 217-341 4-123 (140)
101 3cg0_A Response regulator rece 38.2 1.5E+02 0.0053 23.7 9.6 55 286-342 54-128 (140)
102 3rf7_A Iron-containing alcohol 37.8 25 0.00086 36.3 4.2 32 286-318 109-159 (375)
103 3m9w_A D-xylose-binding peripl 36.7 1.1E+02 0.0036 29.0 8.3 109 218-340 2-118 (313)
104 2qv0_A Protein MRKE; structura 36.4 1.7E+02 0.0059 23.7 9.7 55 286-341 55-126 (143)
105 2f9f_A First mannosyl transfer 35.9 76 0.0026 27.7 6.6 63 277-343 88-163 (177)
106 2iya_A OLEI, oleandomycin glyc 35.7 31 0.0011 34.5 4.5 57 282-342 317-389 (424)
107 2g49_C Glucagon preproprotein; 35.5 13 0.00043 25.3 1.0 24 23-46 1-24 (29)
108 2qh8_A Uncharacterized protein 35.2 1.9E+02 0.0064 27.4 9.9 84 217-317 7-97 (302)
109 3dnf_A ISPH, LYTB, 4-hydroxy-3 35.1 65 0.0022 32.6 6.6 63 217-295 155-218 (297)
110 3g1w_A Sugar ABC transporter; 35.1 92 0.0032 29.2 7.5 104 216-333 2-111 (305)
111 3gl9_A Response regulator; bet 35.0 1.7E+02 0.0059 23.3 11.1 99 219-341 3-121 (122)
112 3ol1_A Vimentin; structural ge 34.8 79 0.0027 27.5 6.4 44 64-107 22-72 (119)
113 3r75_A Anthranilate/para-amino 34.5 27 0.00093 38.8 4.1 74 219-320 447-531 (645)
114 2iks_A DNA-binding transcripti 34.4 1.8E+02 0.006 27.1 9.4 111 217-341 19-135 (293)
115 2iyf_A OLED, oleandomycin glyc 34.4 34 0.0012 34.2 4.5 57 282-342 295-367 (430)
116 3eod_A Protein HNR; response r 34.1 1.8E+02 0.006 23.2 12.4 102 217-343 6-127 (130)
117 3clh_A 3-dehydroquinate syntha 34.0 29 0.00099 35.1 3.9 31 287-318 86-119 (343)
118 3grc_A Sensor protein, kinase; 33.5 1.9E+02 0.0065 23.3 9.8 104 217-344 5-129 (140)
119 2jjm_A Glycosyl transferase, g 33.2 1.6E+02 0.0055 28.6 9.2 119 217-342 210-350 (394)
120 3q9s_A DNA-binding response re 33.2 2.9E+02 0.01 25.5 10.8 58 285-344 80-156 (249)
121 3okp_A GDP-mannose-dependent a 33.1 1.9E+02 0.0064 27.7 9.5 123 215-342 195-344 (394)
122 4e5v_A Putative THUA-like prot 33.1 52 0.0018 32.5 5.6 92 217-323 3-99 (281)
123 3brs_A Periplasmic binding pro 32.1 1.3E+02 0.0044 27.8 7.9 113 216-341 3-126 (289)
124 1rrv_A Glycosyltransferase GTF 32.1 34 0.0012 34.3 4.1 101 231-342 251-369 (416)
125 4hcj_A THIJ/PFPI domain protei 31.9 29 0.00098 31.9 3.2 101 212-320 2-111 (177)
126 3egc_A Putative ribose operon 31.8 1.9E+02 0.0064 26.8 9.1 110 217-341 7-122 (291)
127 3hut_A Putative branched-chain 31.3 2.1E+02 0.0071 27.3 9.5 85 217-317 138-227 (358)
128 3h75_A Periplasmic sugar-bindi 31.0 2E+02 0.007 27.6 9.4 89 218-320 3-96 (350)
129 2fvy_A D-galactose-binding per 30.5 1.9E+02 0.0064 26.9 8.8 87 219-319 3-93 (309)
130 3swk_A Vimentin; cytoskeleton, 30.3 38 0.0013 28.0 3.4 29 80-108 25-53 (86)
131 2fn9_A Ribose ABC transporter, 30.2 1.5E+02 0.0051 27.4 8.0 87 219-319 3-92 (290)
132 3c97_A Signal transduction his 30.1 75 0.0026 26.0 5.3 61 285-345 53-133 (140)
133 2ab0_A YAJL; DJ-1/THIJ superfa 30.0 78 0.0027 29.1 5.9 100 218-325 2-114 (205)
134 1y81_A Conserved hypothetical 29.6 1.5E+02 0.005 25.9 7.4 91 217-320 13-103 (138)
135 3h1g_A Chemotaxis protein CHEY 29.4 1.1E+02 0.0039 24.5 6.3 57 286-342 51-127 (129)
136 1iir_A Glycosyltransferase GTF 29.3 50 0.0017 33.1 4.8 56 282-342 297-368 (415)
137 3h4t_A Glycosyltransferase GTF 28.4 46 0.0016 33.4 4.3 57 281-341 279-351 (404)
138 3ehd_A Uncharacterized conserv 28.3 1.5E+02 0.0052 27.1 7.4 97 217-319 3-106 (162)
139 3c3k_A Alanine racemase; struc 28.1 2.7E+02 0.0091 25.8 9.4 85 217-319 7-95 (285)
140 3k9c_A Transcriptional regulat 28.1 1.9E+02 0.0065 27.0 8.4 107 218-341 12-123 (289)
141 1jrj_A Exendin-4; Trp-CAGE, GL 28.1 17 0.00058 26.3 0.7 24 23-46 1-24 (39)
142 1vco_A CTP synthetase; tetrame 27.9 67 0.0023 35.1 5.7 38 283-320 352-394 (550)
143 3tb6_A Arabinose metabolism tr 27.7 1.7E+02 0.0057 27.0 7.9 109 219-341 16-134 (298)
144 1a04_A Nitrate/nitrite respons 27.6 3.2E+02 0.011 24.1 10.3 58 286-344 51-127 (215)
145 3clk_A Transcription regulator 27.5 1.7E+02 0.0059 27.2 7.9 110 217-341 7-122 (290)
146 3gv0_A Transcriptional regulat 27.4 1.7E+02 0.0059 27.2 8.0 109 217-341 7-124 (288)
147 3beo_A UDP-N-acetylglucosamine 26.9 2E+02 0.007 27.4 8.6 59 279-342 275-342 (375)
148 4ehi_A Bifunctional purine bio 26.8 86 0.0029 34.2 6.2 123 212-355 18-194 (534)
149 3gbv_A Putative LACI-family tr 26.6 1.1E+02 0.0037 28.5 6.3 114 217-340 7-129 (304)
150 3luf_A Two-component system re 26.5 4E+02 0.014 24.9 10.5 56 286-341 169-244 (259)
151 3f6c_A Positive transcription 26.4 1.1E+02 0.0038 24.5 5.7 59 286-345 46-123 (134)
152 3dbi_A Sugar-binding transcrip 26.3 2E+02 0.0069 27.5 8.4 111 217-341 60-178 (338)
153 3ff4_A Uncharacterized protein 26.3 26 0.00088 30.6 1.7 89 216-319 2-91 (122)
154 3brq_A HTH-type transcriptiona 26.1 2.2E+02 0.0074 26.2 8.3 86 217-319 18-110 (296)
155 1oi4_A Hypothetical protein YH 25.9 30 0.001 31.6 2.2 97 217-320 22-128 (193)
156 3lkb_A Probable branched-chain 25.8 1.5E+02 0.005 29.0 7.4 86 217-316 142-230 (392)
157 1vhq_A Enhancing lycopene bios 25.8 27 0.00094 32.9 2.0 37 285-321 89-144 (232)
158 2bfw_A GLGA glycogen synthase; 25.6 1.2E+02 0.004 26.4 6.0 61 277-341 106-179 (200)
159 4eyg_A Twin-arginine transloca 25.6 1.4E+02 0.0048 28.6 7.1 87 217-317 138-230 (368)
160 2rjo_A Twin-arginine transloca 25.5 1.1E+02 0.0037 29.3 6.3 90 216-319 3-97 (332)
161 3t6k_A Response regulator rece 25.5 2.7E+02 0.0092 22.6 11.3 102 218-343 4-125 (136)
162 3to5_A CHEY homolog; alpha(5)b 25.2 98 0.0033 26.8 5.3 56 286-341 57-132 (134)
163 3o74_A Fructose transport syst 24.9 1.3E+02 0.0045 27.4 6.4 111 218-342 2-118 (272)
164 3nhm_A Response regulator; pro 24.8 2.6E+02 0.0089 22.1 9.3 59 285-343 46-123 (133)
165 2d59_A Hypothetical protein PH 24.7 1.6E+02 0.0055 25.6 6.7 90 217-320 21-111 (144)
166 8abp_A L-arabinose-binding pro 24.3 2.2E+02 0.0076 26.4 8.1 87 218-319 2-91 (306)
167 2xw6_A MGS, methylglyoxal synt 24.2 1.1E+02 0.0038 27.3 5.5 77 216-295 1-83 (134)
168 3lte_A Response regulator; str 24.0 2.7E+02 0.0092 22.0 11.6 105 217-345 5-128 (132)
169 3uug_A Multiple sugar-binding 23.8 2.2E+02 0.0076 26.8 8.1 89 218-320 3-94 (330)
170 3h5l_A Putative branched-chain 23.5 2.6E+02 0.009 27.5 8.9 87 214-315 160-251 (419)
171 3m6m_D Sensory/regulatory prot 23.4 3.1E+02 0.011 22.5 9.7 58 285-342 57-136 (143)
172 3b2n_A Uncharacterized protein 23.4 1.5E+02 0.005 24.0 5.9 59 286-345 49-126 (133)
173 3kht_A Response regulator; PSI 23.3 3E+02 0.01 22.3 10.5 57 285-341 50-127 (144)
174 2h0a_A TTHA0807, transcription 23.3 1.9E+02 0.0066 26.3 7.4 105 221-341 2-111 (276)
175 2qsj_A DNA-binding response re 23.3 1.4E+02 0.0046 24.8 5.8 61 285-346 49-128 (154)
176 3szu_A ISPH, 4-hydroxy-3-methy 23.3 47 0.0016 34.1 3.2 63 218-296 170-235 (328)
177 3cg4_A Response regulator rece 23.1 2.9E+02 0.01 22.1 9.4 102 216-341 5-126 (142)
178 3bbl_A Regulatory protein of L 23.0 1.5E+02 0.0052 27.5 6.6 85 218-319 4-96 (287)
179 3ttv_A Catalase HPII; heme ori 22.8 85 0.0029 35.7 5.4 97 214-319 596-701 (753)
180 3hcw_A Maltose operon transcri 22.8 3.4E+02 0.012 25.2 9.1 110 217-341 6-128 (295)
181 3snr_A Extracellular ligand-bi 22.7 1.9E+02 0.0065 27.3 7.4 84 217-315 134-221 (362)
182 3hv2_A Response regulator/HD d 21.9 3.3E+02 0.011 22.3 9.4 101 217-342 13-133 (153)
183 1sgh_B Ezrin-radixin-moesin bi 21.9 30 0.001 25.0 1.0 13 82-94 23-35 (39)
184 3d02_A Putative LACI-type tran 21.6 2.7E+02 0.0093 25.7 8.1 88 218-319 4-95 (303)
185 3d54_D Phosphoribosylformylgly 21.3 16 0.00055 33.5 -0.6 74 218-320 2-89 (213)
186 2hsg_A Glucose-resistance amyl 21.0 3.2E+02 0.011 25.9 8.7 109 218-341 60-174 (332)
187 2fep_A Catabolite control prot 20.9 2.8E+02 0.0094 25.8 8.0 109 218-341 16-130 (289)
188 2l63_A GLP-2, glucagon-like pe 20.9 27 0.00092 24.4 0.6 24 23-46 1-24 (33)
189 2b4n_A Gastric inhibitory poly 20.8 57 0.002 23.9 2.3 23 24-46 2-24 (42)
190 3huu_A Transcription regulator 20.7 2.4E+02 0.0081 26.5 7.5 110 217-341 21-141 (305)
191 1gpw_B Amidotransferase HISH; 20.5 27 0.00092 31.9 0.7 36 285-320 41-87 (201)
192 3r46_A Coiled coil helix L24D; 20.5 1.1E+02 0.0038 20.9 3.5 24 59-82 6-30 (35)
193 1qkk_A DCTD, C4-dicarboxylate 20.3 3.6E+02 0.012 22.1 11.2 101 217-342 2-121 (155)
194 2zay_A Response regulator rece 20.2 3.5E+02 0.012 21.9 8.4 57 286-342 52-128 (147)
195 3l6u_A ABC-type sugar transpor 20.0 4.2E+02 0.014 24.3 9.0 128 219-357 136-281 (293)
No 1
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-76 Score=615.34 Aligned_cols=309 Identities=39% Similarity=0.749 Sum_probs=267.7
Q ss_pred EEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhh-cCCccccc--ccccchHHHhhhCCC
Q 009486 210 ISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT-ESSYFSFV--QTWKDEKEILLLHTK 286 (533)
Q Consensus 210 ~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~-~~~~~~~i--~~~~~~~~~~~~~~~ 286 (533)
.+|+|..+|++|+||+|++++++.+.++++++||.+ .+++|++|+.++..+.. ....+... ..+.......++..+
T Consensus 30 ~~l~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~-~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (365)
T 3pfn_A 30 QRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLME-ENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQ 108 (365)
T ss_dssp CBEEESSCCCEEEEEECTTCGGGHHHHHHHHHHHHH-TSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTT
T ss_pred cccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEehHHhhhhccccccccccccccccccccChhhcccC
Confidence 569999999999999999999999999999999987 58999999998875421 11111100 000000112345678
Q ss_pred ccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeeccccc---
Q 009486 287 VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKN--- 363 (533)
Q Consensus 287 ~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~--- 363 (533)
+|+||+||||||||+|+|++.+..+||+|||+|+|||||++++++++++|+++++|+|.+++|+||+|++.+.....
T Consensus 109 ~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~vl~g~~~v~~R~~L~~~v~~~~~~~~~~ 188 (365)
T 3pfn_A 109 IDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTA 188 (365)
T ss_dssp CSEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHHHHHSCCBEEEECCEEEEEEC--------
T ss_pred CCEEEEEcChHHHHHHHHHhccCCCCEEEEcCCCCccceeecHHHHHHHHHHHHcCCCeEEEEeeEEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997631000
Q ss_pred ------------------ccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCC
Q 009486 364 ------------------EIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGS 425 (533)
Q Consensus 364 ------------------~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGP 425 (533)
.......++|||||+|.|+..++|+++++||||+++++|+||||||||||||||||||||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ALNEvvI~r~~~~~m~~~~v~idg~~~~~~~aDGlIVSTPTGSTAYslSAGGP 268 (365)
T 3pfn_A 189 VHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGAS 268 (365)
T ss_dssp ---------------------CEEEEEESSEEEEECTTCSSCCCEEEEETTEEEEEECSSEEEEECGGGGGTHHHHTTCC
T ss_pred ccccccccccccccccccCCceeeccCccceEEEecCCCCcEEEEEEEECCEEEEEEecCeEEEeCCccHHHHHHhCCCC
Confidence 00011357899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCC
Q 009486 426 MVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDST 505 (533)
Q Consensus 426 Iv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~ 505 (533)
|+||++++|++||||||+|++||+|+|++++|+|++..+++..+++++||+...+|.+||+|+|++|++++++|++++..
T Consensus 269 Iv~P~~~~i~ltPI~PhsLs~RPiVlp~~~~I~i~v~~~~~~~~~vs~DG~~~~~l~~gd~V~I~~s~~~~~li~~~~~~ 348 (365)
T 3pfn_A 269 MIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPV 348 (365)
T ss_dssp EECTTSCCEEEEEESCSSTTCCCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCEEEEEECSSCEEEECSSCHH
T ss_pred ccCCCCCeEEEEeccCCccCCCceEECCCCEEEEEEccCCCCcEEEEEcCCeeeecCCCCEEEEEECCCceEEEEeCCCC
Confidence 99999999999999999999999999999999999976666679999999999999999999999999999999888888
Q ss_pred CChHHHHHhhhCCC
Q 009486 506 DDFFRSIHDGLHWN 519 (533)
Q Consensus 506 ~dff~~LreKL~Wg 519 (533)
+|||++|+++||-.
T Consensus 349 ~d~f~~l~~~~~~~ 362 (365)
T 3pfn_A 349 SDWFESLAQCLHHH 362 (365)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHhhh
Confidence 99999999999853
No 2
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-70 Score=573.80 Aligned_cols=328 Identities=34% Similarity=0.540 Sum_probs=269.3
Q ss_pred eEEEecCCceeee--ccCcceEEeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCc
Q 009486 191 DIVYFERGNITTA--ERSSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSY 267 (533)
Q Consensus 191 ~~~~~~~~~i~~~--~~~~~~~~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~ 267 (533)
++..++.+..+.+ ++++++..+.|..+|++|+||+|+.++++.+.+.++++||.++ .+++|++++..+..+......
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~ 91 (388)
T 3afo_A 12 PVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKS 91 (388)
T ss_dssp EGGGSCCCCCCEEEC----CCEEEECSSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCS
T ss_pred eHhhcCcccCcceEeCcchhheeeEccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccc
Confidence 4444555555444 6788899999999999999999999999999999999999864 389999998877654321100
Q ss_pred -------ccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCC-cEEEEeCCCCccCccCCcchHHHHHHHH
Q 009486 268 -------FSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVP-PIVPFSLGSLGFMTPFHSEHYKDYLDSV 339 (533)
Q Consensus 268 -------~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~-PILGIN~G~LGFLt~~~~ed~~~~L~~l 339 (533)
......+.. ......++|+||+||||||||+|+|.+.+..+ ||+|||+|+||||+++++++++++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~---~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G~lGFLt~~~~~~~~~al~~i 168 (388)
T 3afo_A 92 PLENDPNRPHILYTGP---EQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEV 168 (388)
T ss_dssp CGGGCTTSCEEEEECC---HHHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECSSCCSSCCEEGGGHHHHHHHH
T ss_pred cccccccccccccccc---hhhcccCCCEEEEEeCcHHHHHHHHHhcccCCCeEEEEECCCcccCCcCChHHHHHHHHHH
Confidence 000000111 11233568999999999999999999987765 8999999999999999999999999999
Q ss_pred HcCCceEEEEeeeeEEEeecccccccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHH
Q 009486 340 LRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYS 419 (533)
Q Consensus 340 l~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYs 419 (533)
++|+|.+++|+||+|++.+++.. .....+|||||+|.++..++|++++++|||+++++|+||||||||||||||||
T Consensus 169 l~g~~~~~~r~~L~~~v~~~~~~----~~~~~~ALNev~i~~~~~~~~~~~~v~id~~~~~~~~~DGliVsTPTGSTAYs 244 (388)
T 3afo_A 169 ISSRAKCLHRTRLECHLKKKDSN----SSIVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYS 244 (388)
T ss_dssp HTTCCEEEEECCEEEEEECTTCC----CCEEEEESSEEEEECTTCSSCEEEEEEETTEEEEEEEEEEEEEECTGGGGTHH
T ss_pred hcCCceEEEeeEEEEEEEeCCcc----chhhheeeceEEEecCCCCcEEEEEEEECCEEEEeecCCeEEEeCCCcHHHHH
Confidence 99999999999999999765321 01357899999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEEEeccCC-----CCCEEEEEcCCcccccCCCCEEEEEecCC
Q 009486 420 LAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNS-----RSPAWASFDGKDRKQLAPGDALVCSMAPW 494 (533)
Q Consensus 420 LSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I~v~~~~-----r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~ 494 (533)
||||||||||.+++|++||||||+|++||+|+|++++|+|++.... +..+++++||+...+|.+||+|.|++++.
T Consensus 245 lSAGGpIv~P~~~~~~ltPI~Ph~l~~RpiVl~~~~~i~i~v~~~~~~~~~~~~~~l~~DG~~~~~l~~gd~v~v~~s~~ 324 (388)
T 3afo_A 245 LSAGGSIVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVINEVG 324 (388)
T ss_dssp HHTTCCEECTTSCEEEEEEEEESCSCCCCEEEETTCCEEEEECCCSSCSCSSSCEEEEETTEEEEEECTTCEEEEEESSC
T ss_pred HhccCCcccCCCCceEEeeecCCcccCCCeEECCCCEEEEEEccccccccccccEEEEEcCCcceecCCCCEEEEEECCc
Confidence 9999999999999999999999999999999999999999986432 24689999999999999999999999987
Q ss_pred CeeE------------------E--------EeeCCCCChHHHHHhhhCCCccCCCC
Q 009486 495 PVPT------------------A--------CQVDSTDDFFRSIHDGLHWNLRKTQS 525 (533)
Q Consensus 495 ~v~l------------------i--------~l~~~~~dff~~LreKL~Wg~r~~q~ 525 (533)
++.+ + +.-....+|++.|+++|+||.|.+++
T Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~lr~kl~W~~~~~~~l~~n~~~~~~ 381 (388)
T 3afo_A 325 TIYIDGTQLPTTRKTENDFNNSKKPKRSGIYCVAKTENDWIRGINELLGFNSSFRLT 381 (388)
T ss_dssp CCCCTTC------------------CCCSEEEECSSTTHHHHHHHHTTCTTCCCCCC
T ss_pred eeeeccccccccccccccccceeecCCCCceeecccccchhHHHHhhcCCCcccccc
Confidence 6622 2 22234567788888889999888764
No 3
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=100.00 E-value=2.7e-65 Score=515.52 Aligned_cols=247 Identities=21% Similarity=0.386 Sum_probs=225.9
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+||+|++++ +.++.+||.+ .|+++++++..+. ...++|+||+|||||||
T Consensus 31 ki~iv~~~~~~-----~~~l~~~L~~-~g~~v~~~~~~~~-----------------------~~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 31 RAAVVYKTDGH-----VKRIEEALKR-LEVEVELFNQPSE-----------------------ELENFDFIVSVGGDGTI 81 (278)
T ss_dssp EEEEEESSSTT-----HHHHHHHHHH-TTCEEEEESSCCG-----------------------GGGGSSEEEEEECHHHH
T ss_pred EEEEEeCCcHH-----HHHHHHHHHH-CCCEEEEcccccc-----------------------ccCCCCEEEEECCCHHH
Confidence 59999999887 7889999976 6899988754221 11358999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEEe
Q 009486 300 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 379 (533)
Q Consensus 300 L~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVvI 379 (533)
|+|+|.+.+. +||+|||+|+||||+++++++++++|+++++ +|.+++|+||++ +.++ ..+|||||+|
T Consensus 82 L~aa~~~~~~-~PilGIN~G~lGFLt~~~~~~~~~~l~~l~~-~~~i~~r~~L~~-v~~~----------~~~ALNEv~I 148 (278)
T 1z0s_A 82 LRILQKLKRC-PPIFGINTGRVGLLTHASPENFEVELKKAVE-KFEVERFPRVSC-SAMP----------DVLALNEIAV 148 (278)
T ss_dssp HHHHTTCSSC-CCEEEEECSSSCTTCCBBTTBCHHHHHHHHH-HCCEEEECCEEE-TTEE----------EEEESSEEEE
T ss_pred HHHHHHhCCC-CcEEEECCCCCccccccCHHHHHHHHHHHHh-hCeEEEeEEEEE-EECC----------CcEEEEEEEE
Confidence 9999999887 9999999999999999999999999999999 999999999999 7542 2689999999
Q ss_pred ccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEEE
Q 009486 380 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 459 (533)
Q Consensus 380 ~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~I 459 (533)
.++..++|++++++|||+++++|+|||||||||||||||+|||||||++|++++|++||||||++++||+|+|++++|+|
T Consensus 149 ~~~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAY~lSAGGpIv~P~~~~l~ltPI~P~~l~~RpiVl~~~~~i~i 228 (278)
T 1z0s_A 149 LSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEV 228 (278)
T ss_dssp EESSTTCCEEEEEEETTEEEEEEEESEEEEEESGGGGTHHHHTTCCEECTTSCCEEEEEESCCSSBCCCEEECTTSCEEE
T ss_pred ecCCCccEEEEEEEECCEEEEEEecCeEEEecCCchhHHHhhCCCceeCCCCCeEEEEEeCCCCCCCCcEEECCCCEEEE
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCC
Q 009486 460 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 519 (533)
Q Consensus 460 ~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg 519 (533)
+ +.++.+++||+. ++.+||+|+|++++.++++ + .+++||++||+||+|-
T Consensus 229 ~-----~~~~~l~~DG~~--~l~~g~~v~I~~s~~~~~l--~--~~~~f~~~Lr~Kl~w~ 277 (278)
T 1z0s_A 229 I-----AEKAIVVADGQK--SVDFDGEITIEKSEFPAVF--F--KNEKRFRNLFGKVRSI 277 (278)
T ss_dssp E-----EEEEEEEETTTE--EEEEEEEEEEEECSCCEEE--E--CCTTHHHHHHHHHHTC
T ss_pred E-----eCcEEEEEcCCe--ecCCCcEEEEEECCCeeEe--C--CCCCHHHHHHHHhCCC
Confidence 7 235899999998 8999999999999999987 3 5799999999999995
No 4
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=100.00 E-value=1.5e-61 Score=491.80 Aligned_cols=291 Identities=22% Similarity=0.307 Sum_probs=241.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcC--C-ccc----ccccccchHHHhhhCCCccE
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES--S-YFS----FVQTWKDEKEILLLHTKVDL 289 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~--~-~~~----~i~~~~~~~~~~~~~~~~Dl 289 (533)
+|++|+||+|+.++++.+.+.++.+||.+ .+++|++++..+..+.... . .+. ....+.. ......++|+
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~d~ 78 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDA---DQHAADGCEL 78 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEEC--------------------------------------CCC
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhhccccccccccccccccccccc---ccccccCCCE
Confidence 47899999999999999999999999976 6899988766554320000 0 000 0000000 0013457899
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeeccccccccccc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIED 369 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~ 369 (533)
||++|||||||++++.+.+.++|++|||+|++|||+++.+++++++++.+++|+|.++.|++|++.+.+++.. ..
T Consensus 79 vi~~GGDGT~l~a~~~~~~~~~pvlgi~~G~~gfl~~~~~~~~~~~~~~i~~g~~~~~~r~~l~~~v~~~g~~-----~~ 153 (307)
T 1u0t_A 79 VLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRI-----VN 153 (307)
T ss_dssp EEEEECHHHHHHHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHHHTCCEEEEECCEEEEEEETTEE-----EE
T ss_pred EEEEeCCHHHHHHHHHhccCCCCEEEEeCCCCccCcccCHHHHHHHHHHHHcCCcEEEEEEEEEEEEEeCccc-----ee
Confidence 9999999999999999987789999999999999999999999999999999999999999999998765321 13
Q ss_pred ceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCe
Q 009486 370 PILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPL 449 (533)
Q Consensus 370 ~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPl 449 (533)
..+||||++|.++..++++++++++||+++++|++||||||||||||||||||||||++|+++++++||||||+++.||+
T Consensus 154 ~~~ALNev~i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~lSaGGpiv~P~~~~~~l~pi~p~~l~~rp~ 233 (307)
T 1u0t_A 154 RGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPM 233 (307)
T ss_dssp EEEESSEEEEECSSSSSCEEEEEESSSSEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEEEESCSSSCCCCE
T ss_pred ceeeeeeEEEecCCCceEEEEEEEECCEEEEEEcCCEEEEccchhhHHHHhcCCCCccCCCCCeEEEEeecCccccCCCE
Confidence 46899999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCC
Q 009486 450 ILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 519 (533)
Q Consensus 450 Vlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg 519 (533)
|+|++.+|+|++... +.++.+++||+...++.+|+.|.|++++++++++. +.+++||++||+||+|+
T Consensus 234 v~~~~~~i~i~v~~~-~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~--~~~~~~~~~l~~kl~~~ 300 (307)
T 1u0t_A 234 VTSPEATIAIEIEAD-GHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWAR--LDSAPFTDRLVRKFRLP 300 (307)
T ss_dssp EECTTCCEEEEECTT-SCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEE--CSCCCHHHHHHHHHTCC
T ss_pred EECCCCEEEEEEecC-CCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEE--eCCCCHHHHHHHHhCCC
Confidence 999999999988532 34689999999988999999999999999999975 46899999999999886
No 5
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=100.00 E-value=1.4e-60 Score=478.42 Aligned_cols=287 Identities=26% Similarity=0.436 Sum_probs=241.1
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.|++|+||+||.++.+.+.+.++.+||.+ .+++|++++..+..+... .+. .+. . .....++|+||++|||
T Consensus 4 ~mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~--~~~---~~~-~---~~~~~~~D~vi~~GGD 73 (292)
T 2an1_A 4 HFKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVEQQIAHELQLK--NVP---TGT-L---AEIGQQADLAVVVGGD 73 (292)
T ss_dssp CCCEEEEECC-------CHHHHHHHHHHH-TTCEEEEEHHHHHHTTCS--SCC---EEC-H---HHHHHHCSEEEECSCH
T ss_pred cCcEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcccc--ccc---ccc-h---hhcccCCCEEEEEcCc
Confidence 36899999999998888999999999976 689999877654432100 000 010 1 1123468999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEe
Q 009486 297 GTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNE 376 (533)
Q Consensus 297 GTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNE 376 (533)
||+|++++.+.+.++|++|||+|++|||+++.+++++++++.+++|+|.+++|++|++.+.+++. .....+||||
T Consensus 74 GT~l~a~~~~~~~~~P~lGI~~Gt~gfla~~~~~~~~~al~~i~~g~~~~~~r~~l~~~~~~~~~-----~~~~~~alne 148 (292)
T 2an1_A 74 GNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDR-----QKRISTAINE 148 (292)
T ss_dssp HHHHHHHHHHTTSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHTTCEEEEEEEEEEEEEECC---------CEEEESSE
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCcccCCcCCHHHHHHHHHHHHcCCCEEEEeEEEEEEEEeCCc-----eEeeeeEeee
Confidence 99999999998888999999999999999999999999999999999999999999998875432 1235789999
Q ss_pred EEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCE
Q 009486 377 VTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVT 456 (533)
Q Consensus 377 VvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~ 456 (533)
++|.++..++++++++++||++++++++||+||||||||||||+|||||+++|++++++++|||||+++.||+|++++.+
T Consensus 149 v~i~~~~~~~~~~~~v~idg~~~~~~~~dglivstptGSTay~~SaGG~iv~P~~~~~~l~pi~p~~l~~r~iv~~~~~~ 228 (292)
T 2an1_A 149 VVLHPGKVAHMIEFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSST 228 (292)
T ss_dssp EEEEESSTTCCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEEESCSSTTCCCEEEETTCC
T ss_pred EEEecCCCCceEEEEEEECCEEEEEEEeCEEEECCCCchHHHHHhCCCCCCCCCCCeEEEEecCcCcCCCCCEEECCCCE
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCcc
Q 009486 457 LRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 521 (533)
Q Consensus 457 I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r 521 (533)
|+|++.. .+.++.+++||+....+.+|+.|+|+.++..++++.. .+++||++||+||+||.+
T Consensus 229 i~i~~~~-~~~~~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~~--~~~~~~~~l~~kl~w~~~ 290 (292)
T 2an1_A 229 IRLRFSH-RRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHP--KDYSYFNTLSTKLGWSKK 290 (292)
T ss_dssp EEEEECC----CEEEEETTSCCEEECTTCEEEEEEEEEEEEEEEE--TTCCHHHHHHHHHTCBCC
T ss_pred EEEEEcc-CCCceEEEECCCeEEecCCCcEEEEEECCCEEEEEEe--CCCCHHHHHHHHhccCCc
Confidence 9998742 2346899999999899999999999999999998764 689999999999999965
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=100.00 E-value=1.5e-58 Score=462.37 Aligned_cols=259 Identities=22% Similarity=0.336 Sum_probs=228.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 299 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTl 299 (533)
+|+||+|+ ++++.+.+.++.+||.+ .|+++ + ..++|+||++||||||
T Consensus 2 ki~ii~n~-~~~~~~~~~~l~~~l~~-~g~~v--~-----------------------------~~~~D~vv~lGGDGT~ 48 (272)
T 2i2c_A 2 KYMITSKG-DEKSDLLRLNMIAGFGE-YDMEY--D-----------------------------DVEPEIVISIGGDGTF 48 (272)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHTT-SSCEE--C-----------------------------SSSCSEEEEEESHHHH
T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHH-CCCEe--C-----------------------------CCCCCEEEEEcCcHHH
Confidence 69999994 67788999999999965 56664 1 1347999999999999
Q ss_pred HHHHHhcCCC--CCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeE
Q 009486 300 LWAASIFKGP--VPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 377 (533)
Q Consensus 300 L~aar~~~~~--~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEV 377 (533)
|++++.+.+. ++||+|||+|++|||+++.+++++++++.+++|+|.+++|++|++.+.+.++. .....+||||+
T Consensus 49 l~aa~~~~~~~~~~PilGIn~G~lgfl~~~~~~~~~~~l~~l~~g~~~i~~r~~L~~~v~~~~g~----~~~~~~ALNev 124 (272)
T 2i2c_A 49 LSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGK----KEATYLALNES 124 (272)
T ss_dssp HHHHHHTGGGTTTCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCEEEEEEEEEEEEEESSSC----CEEEEEESSEE
T ss_pred HHHHHHHhhcCCCCCEEEEeCCCCCcCCcCCHHHHHHHHHHHHcCCCEEEEEEEEEEEEEeCCCc----EEeHHhhhhHh
Confidence 9999999865 89999999999999999999999999999999999999999999998764321 11157899999
Q ss_pred EeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCC-CC----CeeeC
Q 009486 378 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS-FR----PLILP 452 (533)
Q Consensus 378 vI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs-~R----PlVlp 452 (533)
+|.+. ++++++++++||+++++|++||+|||||||||||++|||||||+|+++++++||||||+++ +| |+|+|
T Consensus 125 ~i~~~--~~~~~~~i~idg~~~~~~~~DGlivsTptGSTaY~~SaGGpiv~P~~~~~~ltpi~p~~l~~~r~~~~p~v~~ 202 (272)
T 2i2c_A 125 TVKSS--GGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFP 202 (272)
T ss_dssp EEEES--SSCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCCCCTTSCEEEEEEESCCCSSSCCCCCSCEEEE
T ss_pred hhccc--CcEEEEEEEECCEEEEEEECCEEEEEccccHHHHHHcCCCCeeCCCCCceEEeCCCCccchhhhccCCcEEeC
Confidence 99884 5899999999999999999999999999999999999999999999999999999999998 55 99999
Q ss_pred CCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccC
Q 009486 453 EHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 522 (533)
Q Consensus 453 ~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~ 522 (533)
++.+|+|++. .+.++.+++||+. ..+.+|++|+|++++.+++++. +.+++||++||+||+|+..-
T Consensus 203 ~~~~i~i~~~--~~~~~~~~~DG~~-~~~~~~~~v~i~~~~~~~~~i~--~~~~~f~~~l~~kl~~~~~~ 267 (272)
T 2i2c_A 203 KHHVVSLQPV--NDKDFQISVDHLS-ILHRDVQEIRYEVSAKKIHFAR--FRSFPFWRRVHDSFIEDLEH 267 (272)
T ss_dssp TTCCEEEEES--SCCCEEEEETTEE-EEECSEEEEEEEEEEEEEEEEE--CSCCCHHHHHHHHHTCC---
T ss_pred CCCEEEEEEc--CCCCEEEEECCCE-eecCCCCEEEEEEcCCEEEEEE--eCCCCHHHHHHHHhCCCccc
Confidence 9999999874 2346899999998 7789999999999999999875 46899999999999999753
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.9e-58 Score=454.08 Aligned_cols=255 Identities=24% Similarity=0.353 Sum_probs=221.7
Q ss_pred EEEEEEcCCChh-HHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 220 TVVILTKPNSNS-VQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 220 ~VlIV~K~~~~~-~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
+|+||+||.... +.+.+.++.++|. ++++... + .....++|+||++|||||
T Consensus 2 ki~ii~Np~~~~~~~~~~~~i~~~l~---~~~~~~~----------------------~---~~~~~~~D~vv~~GGDGT 53 (258)
T 1yt5_A 2 KIAILYREEREKEGEFLKEKISKEHE---VIEFGEA----------------------N---APGRVTADLIVVVGGDGT 53 (258)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTTTSE---EEEEEES----------------------S---SCSCBCCSEEEEEECHHH
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHhc---CCceecc----------------------c---ccccCCCCEEEEEeCcHH
Confidence 699999987665 5555566666653 3342100 0 112346899999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEEEeecccccccccccceeeEEeEE
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 378 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNEVv 378 (533)
||++++.+.+ .+|++|||+|++|||+++.+++++++++.+++|+|.+++|++|++.+.+. ..+||||++
T Consensus 54 ll~~a~~~~~-~~PilGIn~G~~Gfl~~~~~~~~~~al~~i~~g~~~i~~r~~l~~~~~~~----------~~~alNev~ 122 (258)
T 1yt5_A 54 VLKAAKKAAD-GTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREETRWFIQIESELG----------NHLALNDVT 122 (258)
T ss_dssp HHHHHTTBCT-TCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCEEEEEEEEEEEETTE----------EEEESSEEE
T ss_pred HHHHHHHhCC-CCCEEEEECCCCCccCcCCHHHHHHHHHHHHcCCceEEEEEEEEEEEcCC----------cceeeeEEE
Confidence 9999999988 99999999999999999999999999999999999999999999987431 568999999
Q ss_pred eccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCCCCCceEEEeeCCCCCCCCCeeeCCCCEEE
Q 009486 379 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 458 (533)
Q Consensus 379 I~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P~v~aiviTPIcPhsLs~RPlVlp~~~~I~ 458 (533)
|.++...+++++++++||++++++++||+||||||||||||+||||||++|+++++++||||||+++.||+|+|.+.+|+
T Consensus 123 i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~~SaGGpiv~P~~~~~~i~pi~p~~l~~rp~v~~~~~~i~ 202 (258)
T 1yt5_A 123 LERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVV 202 (258)
T ss_dssp EECCTTSCCEEEEEEETTSCCEEEEESEEEEECTGGGGTTTTTTTCCCCCTTCCEEEEEEESCSTTCCCCEEEETTSCEE
T ss_pred EecCCCCceEEEEEEECCEEEEEEEccEEEEEcCCCcHHHHhhCCCcccCCCCCEEEEEEeccccccCCCEEECCCCEEE
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeEEEeeCCCCChHHHHHhhhCCCccC
Q 009486 459 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 522 (533)
Q Consensus 459 I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~li~l~~~~~dff~~LreKL~Wg~r~ 522 (533)
|++. .++.+++||+....+.+ |+|+.++.+++++. +.+++||++||+||+||.+.
T Consensus 203 i~~~----~~~~~~~DG~~~~~~~~---i~i~~~~~~~~li~--~~~~~~~~~l~~kl~w~~~~ 257 (258)
T 1yt5_A 203 VESQ----RDINMLVDGVLTGKTKR---IEVKKSRRYVRILR--PPEYDYVTVIRDKLGYGRRI 257 (258)
T ss_dssp EEEE----EEEEEEETTEEEEEEEE---EEEEEEEEEEEEEE--CTTCCHHHHHHHHHCCSCC-
T ss_pred EEEC----CCEEEEECCCcceeeEE---EEEEECCCeEEEEE--cCCCCHHHHHHHHcCCCccC
Confidence 9872 35889999998776654 99999999999875 57899999999999999753
No 8
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=99.89 E-value=1.2e-23 Score=214.85 Aligned_cols=251 Identities=14% Similarity=0.065 Sum_probs=176.6
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 218 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~~~~--~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
+++++||.||.+. ...+...++.++|.+ .++++.+.......-.. .........++|+||++||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~~~~~a~-------------~~~~~~~~~~~d~vvv~GG 89 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATEKIGDAT-------------LEAERAMHENYDVLIAAGG 89 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECCSTTHHH-------------HHHHHHTTTTCSEEEEEEC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEecCcchHH-------------HHHHHHhhcCCCEEEEEcC
Confidence 5789999999875 466778999999976 57777654321110000 0001122356899999999
Q ss_pred chHHHHHHHhc--CCCCCcEEEEeCCCCccCccC--CcchHHHHHHHHHcCCceE------EEEeee-eEEEeecccccc
Q 009486 296 DGTVLWAASIF--KGPVPPIVPFSLGSLGFMTPF--HSEHYKDYLDSVLRGPISI------TLRNRL-QCHVIRDAAKNE 364 (533)
Q Consensus 296 DGTlL~aar~~--~~~~~PILGIN~G~LGFLt~~--~~ed~~~~L~~ll~G~y~i------e~R~rL-~v~V~r~~~~~~ 364 (533)
|||++.+++.+ .+..+|+.+|++|+.|||+.. -+.++.++++.+++|++.. +.|.++ .+.+--+.....
T Consensus 90 DGTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~~r~fl~~~~~G~~a~v~~ 169 (337)
T 2qv7_A 90 DGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSY 169 (337)
T ss_dssp HHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEETTEEESSEEEEECBCC---
T ss_pred chHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcCCCCCHHHHHHHHHcCCcEEEEEEEECCEEEEEEeeecccHHHHH
Confidence 99999999999 678899999999999999985 4788999999999998873 345333 333310100000
Q ss_pred ----------cccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCC-----
Q 009486 365 ----------IEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHP----- 429 (533)
Q Consensus 365 ----------~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P----- 429 (533)
........|||+++ ..++..+++++||+. +++||++|+|++||| ++|||++.|
T Consensus 170 ~~~~~~k~~~G~~~Y~~~~l~~l~-----~~~~~~~~i~~dg~~---~~~~~~~v~v~n~~~----~gGg~~i~P~a~~~ 237 (337)
T 2qv7_A 170 ETPSKLKSIVGPFAYYIKGFEMLP-----QMKAVDLRIEYDGNV---FQGEALLFFLGLTNS----MAGFEKLVPDAKLD 237 (337)
T ss_dssp ----------CGGGSCCCTTTTGG-----GBCCEEEEEEETTEE---EEEEEEEEEEESSCC----CSSCSCSSTTCCSS
T ss_pred HhhHHHHhccChHHHHHHHHHHHH-----hCCCccEEEEECCEE---EEeeEEEEEEECCCC----CCCCCccCCCCcCC
Confidence 00011223555553 135678999999987 679999999999997 789999999
Q ss_pred --CCCceEEEeeCCCCC-CCCCeeeCCC----CEE------EEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCe
Q 009486 430 --QVPGILFTPICPHSL-SFRPLILPEH----VTL------RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPV 496 (533)
Q Consensus 430 --~v~aiviTPIcPhsL-s~RPlVlp~~----~~I------~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v 496 (533)
.++.++++|+||+.+ ..+|.+++.. ..| +|++.. ..+..+.+||+... ++.+.|+..+..+
T Consensus 238 DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~--~~~~~~~iDGE~~~----~~~i~i~v~p~~l 311 (337)
T 2qv7_A 238 DGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISS--FTDLQLNVDGEYGG----KLPANFLNLERHI 311 (337)
T ss_dssp SSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEEC--SSCCEEEETTEEEE----ESCEEEEEEEEEE
T ss_pred CCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEE--CCCCeEEECCCcCC----CCcEEEEEEcCeE
Confidence 588999999999976 6677776632 222 233322 23578999999754 4679999999999
Q ss_pred eEEE
Q 009486 497 PTAC 500 (533)
Q Consensus 497 ~li~ 500 (533)
+++.
T Consensus 312 ~v~~ 315 (337)
T 2qv7_A 312 DVFA 315 (337)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9864
No 9
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=99.81 E-value=5.9e-21 Score=195.00 Aligned_cols=257 Identities=17% Similarity=0.206 Sum_probs=170.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchh-HHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVR-AELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
+++++||.||.+... +...++.++|.+ .++++.+..... .... .........++|+||++|||
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~-~g~~~~~~~t~~~~~~~--------------~~~~~~~~~~~d~vvv~GGD 92 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLRE-EGMTIHVRVTWEKGDAA--------------RYVEEARKFGVATVIAGGGD 92 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHT-TTCCEEEEECCSTTHHH--------------HHHHHHHHHTCSEEEEEESH
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHH-cCCcEEEEEecCcchHH--------------HHHHHHHhcCCCEEEEEccc
Confidence 678999999987665 567889999975 566665543211 1100 00001112458999999999
Q ss_pred hHHHHHHHhcC----CCCCcEEEEeCCCCc-cCccCC-cchHHHHHHHHHcCCc------eEEEE-eeeeE-------EE
Q 009486 297 GTVLWAASIFK----GPVPPIVPFSLGSLG-FMTPFH-SEHYKDYLDSVLRGPI------SITLR-NRLQC-------HV 356 (533)
Q Consensus 297 GTlL~aar~~~----~~~~PILGIN~G~LG-FLt~~~-~ed~~~~L~~ll~G~y------~ie~R-~rL~v-------~V 356 (533)
|||+.+++.+. +..+|+..|++|+.| |..++. +.++.++++.+++|++ .++.| .++.+ .+
T Consensus 93 GTl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~~g~~~~iDlg~v~~r~~fl~~~~~G~da~v 172 (332)
T 2bon_A 93 GTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRI 172 (332)
T ss_dssp HHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEEEEEEETTSCEESSEEEEEEEEEC
T ss_pred hHHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcCCCCCHHHHHHHHHcCCeEEeeEEEECCceEEEEEEeECccHHH
Confidence 99999999987 778999999999999 666788 7889999999999988 34444 44431 11
Q ss_pred eec-ccccccccccceeeEEeEEeccCCCcceEEEEEEECCeeEEEEecCEEEEcCCCCchHHHhccCCCCCCC------
Q 009486 357 IRD-AAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHP------ 429 (533)
Q Consensus 357 ~r~-~~~~~~~~~~~~~ALNEVvI~rg~~s~mi~lev~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIv~P------ 429 (533)
... ....+.......+++|- +.+-...+...+++.+||+. +++|+++|++..|+ | ++||+++.|
T Consensus 173 ~~~~~~~~k~~~G~~~Y~~~~--l~~l~~~~~~~~~i~~dg~~---~~~~~~~v~v~N~~--~--~ggg~~i~P~a~~~D 243 (332)
T 2bon_A 173 TTETPEKLKAALGSVSYIIHG--LMRMDTLQPDRCEIRGENFH---WQGDALVIGIGNGR--Q--AGGGQQLCPNALIND 243 (332)
T ss_dssp ----------CCHHHHHHHHH--TSCEEEEECEEEEEEETTEE---EEEEESEEEEESSS--C--BTTTBCSCTTCCTTS
T ss_pred HHHhhHHhHhcccHHHHHHHH--HHHHhhCCCeeEEEEECCEE---EEEEEEEEEEECCC--c--cCCCcccCCCCCCCC
Confidence 110 00000000000122331 11111124567889999986 46899999985555 4 789999999
Q ss_pred -CCCceEEEeeCCCCCCC----------CCeeeCCCCEEEEEeccCCCCCEEEEEcCCcccccCCCCEEEEEecCCCeeE
Q 009486 430 -QVPGILFTPICPHSLSF----------RPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPT 498 (533)
Q Consensus 430 -~v~aiviTPIcPhsLs~----------RPlVlp~~~~I~I~v~~~~r~~a~vsiDG~~~~~L~~Gd~I~I~~S~~~v~l 498 (533)
.++.++++|+ ++.+.. +++......+|+|+.. .+..+.+||+... ++.++|+..+..+++
T Consensus 244 G~Ldv~iv~~~-~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~----~~~~~~iDGE~~~----~~~~~i~v~p~al~v 314 (332)
T 2bon_A 244 GLLQLRIFTGD-EILPALVSTLKSDEDNPNIIEGASSWFDIQAP----HDITFNLDGEPLS----GQNFHIEILPAALRC 314 (332)
T ss_dssp SCEEEEEECCS-SCCHHHHHHHHTTCCCTTEEEEEESEEEEEEE----EEEEEEETTEEEE----EEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCH-HHHHHHHHHHHcCCCCCcEEEEEeeEEEEEEC----CCCeEEecCCCCC----CceEEEEEECCeeEE
Confidence 5778899999 885433 5566656677777652 2467999999754 578999999999998
Q ss_pred EEeeCCCCChHH
Q 009486 499 ACQVDSTDDFFR 510 (533)
Q Consensus 499 i~l~~~~~dff~ 510 (533)
+. +...+|+.
T Consensus 315 l~--p~~~~~~~ 324 (332)
T 2bon_A 315 RL--PPDCPLLR 324 (332)
T ss_dssp EE--CTTCTTSC
T ss_pred Ee--CCCccccc
Confidence 64 45566654
No 10
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=98.90 E-value=1.6e-07 Score=94.67 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=83.5
Q ss_pred cCCCCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE
Q 009486 215 ESPPQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT 292 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~--~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv 292 (533)
..+|++++||.||.+ ..+.+...++..+|.+ .++++.+.......- . ..-..+...++|+||+
T Consensus 5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~---------a-----~~~~~~~~~~~d~vv~ 69 (304)
T 3s40_A 5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAA-AFPDLHILHTKEQGD---------A-----TKYCQEFASKVDLIIV 69 (304)
T ss_dssp CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHH-HCSEEEEEECCSTTH---------H-----HHHHHHHTTTCSEEEE
T ss_pred cCCCCEEEEEECcccCCCchHHHHHHHHHHHHH-cCCeEEEEEccCcch---------H-----HHHHHHhhcCCCEEEE
Confidence 356889999999964 3466778899999976 455554422111000 0 0011223357899999
Q ss_pred EeCchHHHHHHHhcCC--CCCcEEEEeCCCCccCc-cCC-cchHHHHHHHHHcCCceE
Q 009486 293 LGGDGTVLWAASIFKG--PVPPIVPFSLGSLGFMT-PFH-SEHYKDYLDSVLRGPISI 346 (533)
Q Consensus 293 LGGDGTlL~aar~~~~--~~~PILGIN~G~LGFLt-~~~-~ed~~~~L~~ll~G~y~i 346 (533)
+|||||+..+++.+.. ..+|+..|++|+.+.|+ .+. +.++.++++.+++|+...
T Consensus 70 ~GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~ 127 (304)
T 3s40_A 70 FGGDGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKP 127 (304)
T ss_dssp EECHHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEE
T ss_pred EccchHHHHHHHHHhhCCCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEE
Confidence 9999999999998876 78999999999998665 455 568899999999997543
No 11
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=86.79 E-value=0.31 Score=46.88 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=49.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH-
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT- 298 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT- 298 (533)
+|++|.....+.. ..+.+||.+ .|+++.+-..... + . +.+...++|.+|+.||-++
T Consensus 2 ~i~vi~h~~~e~~----g~~~~~l~~-~g~~~~~~~~~~~----~--~------------~p~~~~~~d~lii~GGp~~~ 58 (236)
T 3l7n_A 2 RIHFILHETFEAP----GAYLAWAAL-RGHDVSMTKVYRY----E--K------------LPKDIDDFDMLILMGGPQSP 58 (236)
T ss_dssp EEEEEECCTTSCC----HHHHHHHHH-TTCEEEEEEGGGT----C--C------------CCSCGGGCSEEEECCCSSCT
T ss_pred eEEEEeCCCCCCc----hHHHHHHHH-CCCeEEEEeeeCC----C--C------------CCCCccccCEEEECCCCCCc
Confidence 6788887654433 456788876 6777754321111 0 0 0011246899999999877
Q ss_pred --------------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 299 --------------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 299 --------------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.+...+.+...++|||||-+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 94 (236)
T 3l7n_A 59 SSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGA 94 (236)
T ss_dssp TCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred ccccccCcccchHHHHHHHHHHHHcCCCEEEEchHH
Confidence 4555555545689999999885
No 12
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=86.09 E-value=2 Score=44.16 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=52.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGDG 297 (533)
++++||+-+..-....+..++.+.|.+ .++++.+-+.+. .++....+. .-...+ ..++|+||.||| |
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~~~-----~~p~~~~v~-----~~~~~~~~~~~d~IIavGG-G 108 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDE-TEISYEIFDEVE-----ENPSFDNVM-----KAVERYRNDSFDFVVGLGG-G 108 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHH-TTCEEEEEEEEC-----SSCBHHHHH-----HHHHHHTTSCCSEEEEEES-H
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHH-cCCeEEEeCCcc-----CCCCHHHHH-----HHHHHHHhcCCCEEEEeCC-h
Confidence 789999976433222356788888865 566654322111 011111110 001111 247899999999 9
Q ss_pred HHHHHHHhcCC-------------------CCCcEEEEeC
Q 009486 298 TVLWAASIFKG-------------------PVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~~-------------------~~~PILGIN~ 318 (533)
+++-+++.+.- ..+|++-|.+
T Consensus 109 sv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371)
T 1o2d_A 109 SPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371)
T ss_dssp HHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC
Confidence 99999886542 5789988887
No 13
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=86.04 E-value=0.35 Score=49.42 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC------cc--------ccccc-----ccch
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS------YF--------SFVQT-----WKDE 277 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~------~~--------~~i~~-----~~~~ 277 (533)
+|+|+|++-- ..|-.-...+-+++.... .+.+||--.+=.+.+..... .. +.+.+ +...
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a~~-~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKAIY-HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHHHH-CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 5889999874 556666667777777654 57777654333333321100 00 00100 0001
Q ss_pred HHHhhh-----CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 278 KEILLL-----HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 278 ~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
+..... ..++|.+|++|||||+-.+.++ ....+|++||.- | ++||-|..+ .+.++++++.
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l-~~~~i~vigiPkTIDNDl~~td~t~GfdTA~~--~~~~ai~~i~ 154 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKL-TEHGFPCVGVPGTIDNDIPGTDFTIGFDTALN--TVIDAIDKIR 154 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHH-HHTTCCEEEEEEETTCCCTTCSCCEEHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHH-hccCCcEEEeeccccCCCCCCCCCCCHHHHHH--HHHHHHHHHH
Confidence 111111 2368999999999998766554 457899999973 2 788866533 4445555553
No 14
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=86.01 E-value=1.6 Score=45.50 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=52.2
Q ss_pred CCEEEEEEcCCChhHHH--HHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 009486 218 PQTVVILTKPNSNSVQI--LCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~--~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLG 294 (533)
.++++||+-.. .+.. +..++.+.|.+ .++++.+-+.+.. ++....+. .-... ...++|+||.||
T Consensus 43 ~~r~liVtd~~--~~~~~g~~~~v~~~L~~-~g~~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 43 IRKVLFLYGGG--SIKKNGVYDQVVDSLKK-HGIEWVEVSGVKP-----NPVLSKVH-----EAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp CCEEEEEECSS--HHHHSSHHHHHHHHHHH-TTCEEEEECCCCS-----SCBHHHHH-----HHHHHHHHTTCSEEEEEE
T ss_pred CCeEEEEECch--HHhhccHHHHHHHHHHH-cCCeEEEecCccC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeC
Confidence 36899998532 2333 57888888865 5777654222110 11111110 00111 135689999999
Q ss_pred CchHHHHHHHhcCC-------------------CCCcEEEEeC
Q 009486 295 GDGTVLWAASIFKG-------------------PVPPIVPFSL 318 (533)
Q Consensus 295 GDGTlL~aar~~~~-------------------~~~PILGIN~ 318 (533)
| |+++-+++.+.- ..+|++.|.+
T Consensus 110 G-GsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 110 G-GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp S-HHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred C-hhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 9 999999886642 4788888887
No 15
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=84.16 E-value=0.56 Score=48.01 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC------cc--------cccc-----cccch
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS------YF--------SFVQ-----TWKDE 277 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~------~~--------~~i~-----~~~~~ 277 (533)
+++|+|++-- +.|-.-...+-+++.+.. .+++||--.+=.+.+...+. .. +.+. .+...
T Consensus 1 ~k~i~IltsGGdapGmNaair~vv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIA-NGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHT-TTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHHH-CCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4789999864 457777777888888764 67888754333332221100 00 0011 11111
Q ss_pred HHHhh----h-CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 278 KEILL----L-HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 278 ~~~~~----~-~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
+.... + ..++|.+|++|||||+-.|.++.. .++||+||.- | ++||-|.++ .+-++++++.
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgiPkTIDNDl~~td~t~GfdTA~~--~~~~aid~i~ 154 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR-HGFNSIGLPGTIDNDIPYTDATIGYDTACM--TAMDAIDKIR 154 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH-TTCCEEEEEEETTCCCTTCSCCEEHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH-hCCCEEEEeecccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 11111 1 257999999999999887776654 5799999873 2 677766543 3445555543
No 16
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=83.99 E-value=0.58 Score=47.94 Aligned_cols=119 Identities=19% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC------cc--------cccc-----cccch
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS------YF--------SFVQ-----TWKDE 277 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~------~~--------~~i~-----~~~~~ 277 (533)
+++|+|++-- +.|-.-...+-+++.+.. .+++||--.+=.+.+..... .. +.+. .+...
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSALT-EGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHH-TTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4799999864 457777777888888765 57888743333332221100 00 0011 11111
Q ss_pred HHHhh----h-CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------C---CCccCccCCcchHHHHHHHHH
Q 009486 278 KEILL----L-HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 340 (533)
Q Consensus 278 ~~~~~----~-~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~~ll 340 (533)
+.... + ..++|.+|++|||||+-.|.++.. ..+||+||.- | ++||-|.++ .+-++++++.
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgiPkTIDNDl~~td~t~GfdTA~~--~~~~aid~i~ 155 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE-MGFPCIGLPGTIDNDIKGTDYTIGFFTALS--TVVEAIDRLR 155 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH-TTCCEEEEEBCTTCCCTTCSCCBTHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHh-hCCCEEEEeccccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 11111 1 247999999999999887776654 5899999974 2 678866543 3445555543
No 17
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=83.02 E-value=0.63 Score=49.34 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.7
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC----------CCCccCccC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPF 327 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~----------G~LGFLt~~ 327 (533)
.++|.+|++|||||+-.|.++.. +..+||+||.- -++||-|..
T Consensus 103 ~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~ 160 (419)
T 3hno_A 103 HDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVA 160 (419)
T ss_dssp TTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHH
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHH
Confidence 47899999999999987776653 46799999974 278886654
No 18
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=82.82 E-value=2.1 Score=44.02 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCChhHH-HHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 218 PQTVVILTKPNSNSVQ-ILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~-~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
.++++||+.+.-.... .+..++.+.|.+ .++++.+-+.+.. ++....+. .-... ...++|+||.|||
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLRE-AGIEVAIFDGVEP-----NPKDTNVR-----DGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHH-TTCEEEEECCCCS-----SCBHHHHH-----HHHHHHHHTTCCEEEEEES
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHH-cCCeEEEECCccC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC
Confidence 3789999975433210 146788888865 5777644222111 11111110 00111 1256899999999
Q ss_pred chHHHHHHHhcCC-------------------CCCcEEEEeC
Q 009486 296 DGTVLWAASIFKG-------------------PVPPIVPFSL 318 (533)
Q Consensus 296 DGTlL~aar~~~~-------------------~~~PILGIN~ 318 (533)
|+++-+++.+.- ..+|++.|.+
T Consensus 102 -Gsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 102 -GSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp -HHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred -cchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 999999886542 4678888876
No 19
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=78.59 E-value=2.6 Score=43.82 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=47.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-+.-... ...++.+.|.+ ++++.+. .+.. .+....+... ..... ..++|+||.||| |.
T Consensus 53 ~r~liVtd~~~~~~--~~~~v~~~L~~--g~~~~~~-~~~~-----~p~~~~v~~~--~~~~~--~~~~d~IIavGG-Gs 117 (387)
T 3uhj_A 53 KRALVLIDRVLFDA--LSERIGKSCGD--SLDIRFE-RFGG-----ECCTSEIERV--RKVAI--EHGSDILVGVGG-GK 117 (387)
T ss_dssp SEEEEEECTTTHHH--HHHHC--------CCEEEEE-ECCS-----SCSHHHHHHH--HHHHH--HHTCSEEEEESS-HH
T ss_pred CEEEEEECchHHHH--HHHHHHHHHHc--CCCeEEE-EcCC-----CCCHHHHHHH--HHHHh--hcCCCEEEEeCC-cH
Confidence 78999998766543 67888888864 6775221 1110 0111111100 00111 235899999999 99
Q ss_pred HHHHHHhcC-CCCCcEEEEeC
Q 009486 299 VLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~-~~~~PILGIN~ 318 (533)
++-+++.+. ...+|++.|.+
T Consensus 118 ~~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 118 TADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp HHHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHhcCCCEEEecC
Confidence 999998765 25789998887
No 20
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=78.46 E-value=1.1 Score=48.29 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=78.5
Q ss_pred ccCcceEEeeecCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCe-EEEEccchhHHhhhc--CCcc-----------
Q 009486 204 ERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKL-NIYVEPRVRAELLTE--SSYF----------- 268 (533)
Q Consensus 204 ~~~~~~~~l~w~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi-~V~ve~~~a~~l~~~--~~~~----------- 268 (533)
+++...-.+-++.+.++|+|++-- +.|-.-...+-+++.+..+.++ +||--.+-...+..+ ....
T Consensus 83 ~~agpr~~i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~ 162 (487)
T 2hig_A 83 ELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIH 162 (487)
T ss_dssp EECCCBSEESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGG
T ss_pred HHcCCcceeeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHH
Confidence 344444455666678999999975 4577777778888888653455 676433322222110 0000
Q ss_pred ----cccccc---cchHHHhh-h-CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C---CCccC
Q 009486 269 ----SFVQTW---KDEKEILL-L-HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G---SLGFM 324 (533)
Q Consensus 269 ----~~i~~~---~~~~~~~~-~-~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G---~LGFL 324 (533)
+.+.+. ...+...+ + ..++|.+|++|||||+-.|.++.. +..+||+||.- | ++||-
T Consensus 163 ~~GGTiLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFd 242 (487)
T 2hig_A 163 HYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQ 242 (487)
T ss_dssp GSSSCSSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHH
T ss_pred hCCCCeeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHH
Confidence 001100 00111111 1 237899999999999987766542 35689999975 3 78886
Q ss_pred ccCCcchHHHHHHHHH
Q 009486 325 TPFHSEHYKDYLDSVL 340 (533)
Q Consensus 325 t~~~~ed~~~~L~~ll 340 (533)
|.++ .+-++++++.
T Consensus 243 TAv~--~~~eaId~i~ 256 (487)
T 2hig_A 243 TAVE--KAVQAIRAAY 256 (487)
T ss_dssp HHHH--HHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHH
Confidence 6543 4555566654
No 21
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=78.35 E-value=3.4 Score=42.91 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=48.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+-...-....+..++.+.|. ++++.+-+.+. .++....+... .... ...++|+||.||| |+
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~---g~~~~~f~~v~-----~~p~~~~v~~~--~~~~--~~~~~D~IIavGG-Gs 117 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFGGIE-----PNPAYETLMNA--VKLV--REQKVTFLLAVGG-GS 117 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT---TSEEEEECCCC-----SSCBHHHHHHH--HHHH--HHHTCCEEEEEES-HH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC---CCEEEEeCCcC-----CCcCHHHHHHH--HHHH--HHcCCCEEEEeCC-ch
Confidence 78999984332211125677777773 66654432211 01111111000 0001 1246799999999 99
Q ss_pred HHHHHHhcCC----------------------CCCcEEEEeC
Q 009486 299 VLWAASIFKG----------------------PVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~----------------------~~~PILGIN~ 318 (533)
++-+++.+.- ..+|++.|.+
T Consensus 118 viD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPT 159 (408)
T 1oj7_A 118 VLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLT 159 (408)
T ss_dssp HHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEES
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeC
Confidence 9998876541 4578888876
No 22
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=77.97 E-value=6.2 Score=40.40 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCEEEEEEcCCChhHHH--HHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 218 PQTVVILTKPNSNSVQI--LCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~--~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.++++||+.+ .+.+ +..++.+.|.+ .++++.+-+.+. .++....+... .... ...++|+||.|||
T Consensus 31 ~~~~livtd~---~~~~~g~~~~v~~~L~~-~g~~~~~~~~~~-----~~p~~~~v~~~--~~~~--~~~~~d~IIavGG 97 (386)
T 1rrm_A 31 YQKALIVTDK---TLVQCGVVAKVTDKMDA-AGLAWAIYDGVV-----PNPTITVVKEG--LGVF--QNSGADYLIAIGG 97 (386)
T ss_dssp CCEEEEECBH---HHHHTTHHHHHHHHHHH-TTCEEEEECBCC-----SSCBHHHHHHH--HHHH--HHHTCSEEEEEES
T ss_pred CCEEEEEECc---chhhchHHHHHHHHHHH-cCCeEEEECCcc-----CCCCHHHHHHH--HHHH--HhcCcCEEEEeCC
Confidence 3689999853 3333 57888888865 577765422211 11111111000 0001 1246799999999
Q ss_pred chHHHHHHHhcC---------------------CCCCcEEEEeC
Q 009486 296 DGTVLWAASIFK---------------------GPVPPIVPFSL 318 (533)
Q Consensus 296 DGTlL~aar~~~---------------------~~~~PILGIN~ 318 (533)
|+++-+++.+. ...+|++.|.+
T Consensus 98 -Gsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 98 -GSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp -HHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred -hHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 99999887653 23689988886
No 23
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=77.88 E-value=3.7 Score=43.58 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=50.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+.+.-. ..+..++.+.|.+ .++++.+.. .. .+ +....+. .-......++|+||.||| |.
T Consensus 92 ~rvlIVtd~~~~--~~~~~~v~~~L~~-~gi~~~~~~-~~----ge-~~~~~v~-----~~~~~~~~~~D~IIAvGG-GS 156 (450)
T 1ta9_A 92 KSAVVLADQNVW--NICANKIVDSLSQ-NGMTVTKLV-FG----GE-ASLVELD-----KLRKQCPDDTQVIIGVGG-GK 156 (450)
T ss_dssp SEEEEEEEHHHH--HHTHHHHHHHHHH-TTCEEEEEE-EC----SC-CCHHHHH-----HHHTTSCTTCCEEEEEES-HH
T ss_pred CEEEEEECccHH--HHHHHHHHHHHHH-CCCeEEEEe-eC----CC-CCHHHHH-----HHHHHHhhCCCEEEEeCC-cH
Confidence 489999864322 2357888888865 577652110 00 00 0000000 001111127899999999 99
Q ss_pred HHHHHHhcCC-CCCcEEEEeC
Q 009486 299 VLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~-~~~PILGIN~ 318 (533)
++-+++.+.- ..+|++-|.+
T Consensus 157 viD~AK~iA~~~giP~I~IPT 177 (450)
T 1ta9_A 157 TMDSAKYIAHSMNLPSIICPT 177 (450)
T ss_dssp HHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEeC
Confidence 9999987762 4789999886
No 24
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=77.11 E-value=5.9 Score=40.08 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=52.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGD 296 (533)
.++++||+.+.-.. ....++.+.|.+ .++++.+-... .++....+ ..... ...++|+||.+||
T Consensus 34 ~~~~livtd~~~~~--~~~~~v~~~L~~-~g~~~~~~~~~------~~~~~~~v------~~~~~~~~~~~d~IIavGG- 97 (354)
T 3ce9_A 34 FKRVSLYFGEGIYE--LFGETIEKSIKS-SNIEIEAVETV------KNIDFDEI------GTNAFKIPAEVDALIGIGG- 97 (354)
T ss_dssp CSEEEEEEETTHHH--HHHHHHHHHHHT-TTCEEEEEEEE------CCCBHHHH------HHHHTTSCTTCCEEEEEES-
T ss_pred CCeEEEEECccHHH--HHHHHHHHHHHH-cCCeEEEEecC------CCCCHHHH------HHHHHhhhcCCCEEEEECC-
Confidence 36899999765433 356888888864 56665332110 00111111 11111 1256899999999
Q ss_pred hHHHHHHHhcCC-CCCcEEEEeC
Q 009486 297 GTVLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~~-~~~PILGIN~ 318 (533)
|.++-+++.+.- ..+|++-|.+
T Consensus 98 Gsv~D~aK~vA~~~~~p~i~IPT 120 (354)
T 3ce9_A 98 GKAIDAVKYMAFLRKLPFISVPT 120 (354)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEES
T ss_pred hHHHHHHHHHHhhcCCCEEEecC
Confidence 999999987762 4789998887
No 25
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=76.66 E-value=1.1 Score=49.10 Aligned_cols=123 Identities=14% Similarity=0.228 Sum_probs=69.8
Q ss_pred cCCCCEEEEEEcC-CChhHHHHHHHHHHHHHh-cCCeEEEEccchhHHhhhc---------------CCccccccc----
Q 009486 215 ESPPQTVVILTKP-NSNSVQILCAQMVRWLRE-QKKLNIYVEPRVRAELLTE---------------SSYFSFVQT---- 273 (533)
Q Consensus 215 ~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e-~~gi~V~ve~~~a~~l~~~---------------~~~~~~i~~---- 273 (533)
..++++|+|++-- +.|-.-...+.+++.+.. .++.+||--.+-...+... ...++.+.+
T Consensus 69 ~~~~~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~ 148 (555)
T 2f48_A 69 FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTK 148 (555)
T ss_dssp CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCC
T ss_pred cCCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCC
Confidence 5667899999875 456666777778777633 3567776432222111110 001111111
Q ss_pred ccchHHH----hhh-CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CCccCccCCcch
Q 009486 274 WKDEKEI----LLL-HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSEH 331 (533)
Q Consensus 274 ~~~~~~~----~~~-~~~~DlVIvLGGDGTlL~aar~~~-----~~~~PILGIN~-------G-----~LGFLt~~~~ed 331 (533)
+...+.. ..+ ..++|.+|++|||||+-.|..+.. +..+||+||.- | ++||-|.++ .
T Consensus 149 ~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~--~ 226 (555)
T 2f48_A 149 IETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATK--I 226 (555)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHH--H
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHH--H
Confidence 1111111 111 257999999999999987776543 34799999873 2 567755432 4
Q ss_pred HHHHHHHH
Q 009486 332 YKDYLDSV 339 (533)
Q Consensus 332 ~~~~L~~l 339 (533)
+-++++++
T Consensus 227 ~~~aId~i 234 (555)
T 2f48_A 227 YSELIGNL 234 (555)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55666666
No 26
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=75.72 E-value=3.1 Score=42.99 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCEEEEEEcCCChhHHH--HHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 218 PQTVVILTKPNSNSVQI--LCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~--~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.++++||+-+. +.+ +..++.+.|.+ .++++.+-..+.. ++....+... ..... ..++|+||.|||
T Consensus 31 ~~~~liVtd~~---~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~-----~p~~~~v~~~--~~~~~--~~~~D~IIavGG 97 (383)
T 3ox4_A 31 FKNALIVSDAF---MNKSGVVKQVADLLKA-QGINSAVYDGVMP-----NPTVTAVLEG--LKILK--DNNSDFVISLGG 97 (383)
T ss_dssp CCEEEEEEEHH---HHHTTHHHHHHHHHHT-TTCEEEEEEEECS-----SCBHHHHHHH--HHHHH--HHTCSEEEEEES
T ss_pred CCEEEEEECCc---hhhCchHHHHHHHHHH-cCCeEEEECCccC-----CCCHHHHHHH--HHHHH--hcCcCEEEEeCC
Confidence 47899998642 333 57888999965 5777644222110 1111111100 00111 246899999999
Q ss_pred chHHHHHHHhcC-------------------CCCCcEEEEeC
Q 009486 296 DGTVLWAASIFK-------------------GPVPPIVPFSL 318 (533)
Q Consensus 296 DGTlL~aar~~~-------------------~~~~PILGIN~ 318 (533)
|.++-+++.+. ...+|++.|.+
T Consensus 98 -Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 138 (383)
T 3ox4_A 98 -GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINT 138 (383)
T ss_dssp -HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEEC
T ss_pred -cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeC
Confidence 99999988653 12678888876
No 27
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=75.58 E-value=7 Score=40.07 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=52.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+.+.-... ...++.+.|.+.-.+.+++-+.... ++....+... ...+.+. ....|+||.|||
T Consensus 34 ~~k~liVtd~~v~~~--~~~~v~~~L~~~~~~~~~~~~~ge~-----~k~~~~v~~~--~~~~~~~~~~r~d~iIalGG- 103 (368)
T 2gru_A 34 FDQYIMISDSGVPDS--IVHYAAEYFGKLAPVHILRFQGGEE-----YKTLSTVTNL--QERAIALGANRRTAIVAVGG- 103 (368)
T ss_dssp CSEEEEEEETTSCHH--HHHHHHHHHTTTSCEEEEEECCSGG-----GCSHHHHHHH--HHHHHHTTCCTTEEEEEEES-
T ss_pred CCEEEEEECCcHHHH--HHHHHHHHHHhccceeEEEeCCCCC-----CCCHHHHHHH--HHHHHhcCCCCCcEEEEECC-
Confidence 579999998765544 5788888885421232232121110 0111111000 0011111 245799999999
Q ss_pred hHHHHHHHhcC---CCCCcEEEEeC
Q 009486 297 GTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~---~~~~PILGIN~ 318 (533)
|.++-+++.+. ..++|++-|.+
T Consensus 104 Gsv~D~ak~~Aa~~~rgip~i~IPT 128 (368)
T 2gru_A 104 GLTGNVAGVAAGMMFRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99999988766 45789988876
No 28
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=75.51 E-value=32 Score=28.08 Aligned_cols=106 Identities=11% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT---- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv---- 292 (533)
++.+|+||- +++... ..+..+|.+ .|++|..-.+....+. .+ .-...+|+||+
T Consensus 6 ~~~~ilivd--d~~~~~---~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~~-~~~~~~dlvi~D~~l 62 (136)
T 3hdv_A 6 ARPLVLVVD--DNAVNR---EALILYLKS-RGIDAVGADGAEEARL----------------YL-HYQKRIGLMITDLRM 62 (136)
T ss_dssp -CCEEEEEC--SCHHHH---HHHHHHHHH-TTCCEEEESSHHHHHH----------------HH-HHCTTEEEEEECSCC
T ss_pred CCCeEEEEC--CCHHHH---HHHHHHHHH-cCceEEEeCCHHHHHH----------------HH-HhCCCCcEEEEeccC
Confidence 456888886 344443 445556654 4666654333222110 01 11223788887
Q ss_pred EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCce
Q 009486 293 LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 293 LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ 345 (533)
-|+|| .+++..+......+||+-+. .|-.+||.. ++++++...|+++..|...
T Consensus 63 ~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 63 QPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp SSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 35666 45666665433567887765 366677654 8889999999999988654
No 29
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=75.14 E-value=7.7 Score=40.58 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 293 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~--ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvL 293 (533)
..++++||+.+.-... ...++.+.|.+ .|+++. +-+.... ++....+... ...+.+ -....|+||.|
T Consensus 61 ~~~rvlIVtd~~v~~~--~~~~v~~~L~~-~g~~~~~~~~~~gE~-----~kt~~~v~~~--~~~l~~~~~~R~d~IIAv 130 (390)
T 3okf_A 61 AKQKVVIVTNHTVAPL--YAPAIISLLDH-IGCQHALLELPDGEQ-----YKTLETFNTV--MSFLLEHNYSRDVVVIAL 130 (390)
T ss_dssp TTCEEEEEEETTTHHH--HHHHHHHHHHH-HTCEEEEEEECSSGG-----GCBHHHHHHH--HHHHHHTTCCTTCEEEEE
T ss_pred CCCEEEEEECCcHHHH--HHHHHHHHHHH-cCCeEEEEEECCCcC-----CchHHHHHHH--HHHHHhcCCCcCcEEEEE
Confidence 4689999998776544 67889999975 466552 2111110 0000000000 001111 12234899999
Q ss_pred eCchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 294 GGDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 294 GGDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
|| |.++-+++.++ ..++|++-|.+
T Consensus 131 GG-Gsv~D~ak~~Aa~~~rgip~I~IPT 157 (390)
T 3okf_A 131 GG-GVIGDLVGFAAACYQRGVDFIQIPT 157 (390)
T ss_dssp ES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred CC-cHHhhHHHHHHHHhcCCCCEEEeCC
Confidence 99 99999998763 56889988876
No 30
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=75.08 E-value=3.7 Score=42.05 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++||+-+.. ..+..++.+.|.+ .++.+|- .+. .++....+..- .... ...++|+||.+|| |
T Consensus 34 ~~r~liVtd~~~---~~~~~~v~~~L~~-~~~~v~~--~v~-----~~p~~~~v~~~--~~~~--~~~~~D~IIavGG-G 97 (353)
T 3hl0_A 34 LSRALVLSTPQQ---KGDAEALASRLGR-LAAGVFS--EAA-----MHTPVEVTKTA--VEAY--RAAGADCVVSLGG-G 97 (353)
T ss_dssp CCCEEEECCGGG---HHHHHHHHHHHGG-GEEEEEC--CCC-----TTCBHHHHHHH--HHHH--HHTTCSEEEEEES-H
T ss_pred CCEEEEEecCch---hhHHHHHHHHHhh-CCcEEec--CcC-----CCCcHHHHHHH--HHHH--hccCCCEEEEeCC-c
Confidence 368999986543 3467888888865 3454432 111 00111111000 0001 1247899999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeCC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSLG 319 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~G 319 (533)
+++-+++.+. ...+|++.|.+=
T Consensus 98 s~iD~aK~iA~~~~~p~i~IPTT 120 (353)
T 3hl0_A 98 STTGLGKAIALRTDAAQIVIPTT 120 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEECS
T ss_pred HHHHHHHHHHhccCCCEEEEeCC
Confidence 9999998765 357899998873
No 31
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=73.81 E-value=2.1 Score=48.73 Aligned_cols=127 Identities=13% Similarity=0.203 Sum_probs=74.0
Q ss_pred cCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcc----------------cccc-----
Q 009486 215 ESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYF----------------SFVQ----- 272 (533)
Q Consensus 215 ~~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~----------------~~i~----- 272 (533)
..++++|+|++-- +.|-.-...+-+++.... .+++||--.+-.+.+......+ +.+.
T Consensus 12 ~~~~krIaIltsGGdaPGmNaaIravvr~a~~-~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~ 90 (762)
T 3o8l_A 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIF-TGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCK 90 (762)
T ss_dssp TTSSCEEEEECCSSCCTTHHHHHHHHHHHHHH-TTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCC
T ss_pred cccCcEEEEEccCCCchhHhHHHHHHHHHHHH-CCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCC
Confidence 3457899999875 456666667777776654 5788876444333332210000 0011
Q ss_pred cccchHHHhhh-----CCCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEeC-------
Q 009486 273 TWKDEKEILLL-----HTKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL------- 318 (533)
Q Consensus 273 ~~~~~~~~~~~-----~~~~DlVIvLGGDGTlL~aar~~----------------------~~~~~PILGIN~------- 318 (533)
.+...+..... ..++|.+|++|||||+-.|..+. .+..+||+||.-
T Consensus 91 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~ 170 (762)
T 3o8l_A 91 DFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFC 170 (762)
T ss_dssp GGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCC
Confidence 01111111111 24789999999999998876431 124799999863
Q ss_pred C---CCccCccCCcchHHHHHHHHHcCCc
Q 009486 319 G---SLGFMTPFHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 319 G---~LGFLt~~~~ed~~~~L~~ll~G~y 344 (533)
| ++||-|.+ +.+-++++++..--.
T Consensus 171 gTD~TiGfdTA~--~~i~eaid~i~~tA~ 197 (762)
T 3o8l_A 171 GTDMTIGTDSAL--HRITEIVDAITTTAQ 197 (762)
T ss_dssp SCSCCBTHHHHH--HHHHHHHHHHHTTCC
T ss_pred CCcCCcCchhHH--HHHHHHHHHHHHhhh
Confidence 2 67776653 345677877765333
No 32
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=73.21 E-value=4.5 Score=41.53 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++++||+-+.. ..+..++.+.|.+. ++.+|- .+.. ++....+..- ..... ..++|+||.||| |
T Consensus 36 ~~r~liVtd~~~---~~~~~~v~~~L~~~-~~~~f~--~v~~-----~p~~~~v~~~--~~~~~--~~~~D~IIavGG-G 99 (358)
T 3jzd_A 36 AKRALVLCTPNQ---QAEAERIADLLGPL-SAGVYA--GAVM-----HVPIESARDA--TARAR--EAGADCAVAVGG-G 99 (358)
T ss_dssp CSCEEEECCGGG---HHHHHHHHHHHGGG-EEEEEC--CCCT-----TCBHHHHHHH--HHHHH--HHTCSEEEEEES-H
T ss_pred CCeEEEEeCCcH---HHHHHHHHHHhccC-CEEEec--CCcC-----CCCHHHHHHH--HHHhh--ccCCCEEEEeCC-c
Confidence 368999986543 34678888888653 444431 1110 0111101000 00111 246899999999 9
Q ss_pred HHHHHHHhcC-CCCCcEEEEeC
Q 009486 298 TVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 298 TlL~aar~~~-~~~~PILGIN~ 318 (533)
+++-+++.+. ...+|++-|.+
T Consensus 100 sviD~aK~iA~~~~~p~i~IPT 121 (358)
T 3jzd_A 100 STTGLGKAIALETGMPIVAIPT 121 (358)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHhccCCCEEEEeC
Confidence 9999998775 35789999887
No 33
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=72.70 E-value=2.8 Score=40.61 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=47.2
Q ss_pred EEEEEEcCCC--------hhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEE
Q 009486 220 TVVILTKPNS--------NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVV 291 (533)
Q Consensus 220 ~VlIV~K~~~--------~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVI 291 (533)
.|||...... ....-+....+++|.+.++..+++..... .. +.+....+|.+|
T Consensus 6 ~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~------------------~~-~~~~l~~~DGli 66 (254)
T 3fij_A 6 VIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDP------------------ST-AVQAISLVDGLL 66 (254)
T ss_dssp EEEEEC------------------CHHHHHHHHHHTCEEEEECCCCG------------------GG-HHHHHHTCSEEE
T ss_pred EEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCc------------------hH-HHHHHhhCCEEE
Confidence 5888776321 11222335677777665556555532111 11 223345689999
Q ss_pred EEeCch-----------------------HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 292 TLGGDG-----------------------TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 292 vLGGDG-----------------------TlL~aar~~~~~~~PILGIN~G~ 320 (533)
.-||-+ ..+...+.+...++|||||-+|.
T Consensus 67 l~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~ 118 (254)
T 3fij_A 67 LTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGM 118 (254)
T ss_dssp ECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred ECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHH
Confidence 999944 25666676666789999998885
No 34
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=72.54 E-value=5 Score=35.18 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
..+|++|+-||-||++-++.. ++|++.+..+ ..|++.+ ++++++.++|..++..
T Consensus 85 ~~ad~~I~~~G~~t~~Ea~~~----G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 85 PKTRAFITHGGANGIYEAIYH----GIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TTEEEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CCcCEEEEcCCccHHHHHHHc----CCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 789999999999999998864 5799988652 3566554 3567788888888754
No 35
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=72.24 E-value=4.1 Score=41.48 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=50.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++++||+.+.-. ..+..++.+.|.+ .++++.+.. .. .+ +..+.+... .... ...++|+||.||| |.
T Consensus 32 ~~~livtd~~~~--~~~~~~v~~~L~~-~g~~~~~~~-~~----ge-~~~~~v~~~--~~~~--~~~~~d~IIavGG-Gs 97 (370)
T 1jq5_A 32 NKTVVIADEIVW--KIAGHTIVNELKK-GNIAAEEVV-FS----GE-ASRNEVERI--ANIA--RKAEAAIVIGVGG-GK 97 (370)
T ss_dssp SEEEEEECHHHH--HHTHHHHHHHHHT-TTCEEEEEE-CC----SS-CBHHHHHHH--HHHH--HHTTCSEEEEEES-HH
T ss_pred CeEEEEEChHHH--HHHHHHHHHHHHH-cCCeEEEEe-eC----CC-CCHHHHHHH--HHHH--HhcCCCEEEEeCC-hH
Confidence 789999964322 2357888888864 577662110 00 00 000011000 0011 1246899999999 99
Q ss_pred HHHHHHhcCC-CCCcEEEEeC
Q 009486 299 VLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 299 lL~aar~~~~-~~~PILGIN~ 318 (533)
++-+++.+.- ..+|++-|.+
T Consensus 98 v~D~aK~iA~~~~~p~i~IPT 118 (370)
T 1jq5_A 98 TLDTAKAVADELDAYIVIVPT 118 (370)
T ss_dssp HHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEecc
Confidence 9999987762 3688888876
No 36
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=72.16 E-value=3.6 Score=41.88 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=45.4
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCC-eEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCc---cEEEEEe
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKV---DLVVTLG 294 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~g-i~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~---DlVIvLG 294 (533)
++++||+.+.-.. ....++.+.| + .+ +.+++-+.... ++....+... .... ...++ |+||.||
T Consensus 32 ~~~liVtd~~~~~--~~~~~v~~~L-~-~g~~~~~~~~~~e~-----~p~~~~v~~~--~~~~--~~~~~~r~d~iIavG 98 (354)
T 1xah_A 32 DQSFLLIDEYVNQ--YFANKFDDIL-S-YENVHKVIIPAGEK-----TKTFEQYQET--LEYI--LSHHVTRNTAIIAVG 98 (354)
T ss_dssp SCEEEEEEHHHHH--HHHHHHC--------CEEEEEECSGGG-----GCSHHHHHHH--HHHH--HTTCCCTTCEEEEEE
T ss_pred CeEEEEECCcHHH--HHHHHHHHHH-h-cCCeEEEEECCCCC-----CCCHHHHHHH--HHHH--HHcCCCCCceEEEEC
Confidence 6799998643222 2567777777 5 34 55443222211 0111111000 0011 12344 9999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 295 GDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 295 GDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
| |.++-+++.+. ...+|++-|.+
T Consensus 99 G-Gsv~D~ak~vA~~~~rgip~i~IPT 124 (354)
T 1xah_A 99 G-GATGDFAGFVAATLLRGVHFIQVPT 124 (354)
T ss_dssp S-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred C-hHHHHHHHHHHHHhccCCCEEEECC
Confidence 9 99999998775 46889988887
No 37
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=70.44 E-value=9.6 Score=37.16 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=65.5
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
...++|+|++.+.........+.+.+.+.+ .|+++........ ..-......+..++|.+.+ ..
T Consensus 138 P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~~--------------~~~~~~~~~l~~~~d~i~~-~~ 201 (302)
T 3lkv_A 138 PNVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALKS--------------ADVQSATQAIAEKSDVIYA-LI 201 (302)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSSG--------------GGHHHHHHHHHTTCSEEEE-CS
T ss_pred CCCCEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCCh--------------HHHHHHHHhccCCeeEEEE-eC
Confidence 346899999998887766666666666654 6777653221110 0001223345567887764 57
Q ss_pred chHHHHHHHhc----CCCCCcEEEEeCCC--CccCccC--CcchH----HHHHHHHHcCC
Q 009486 296 DGTVLWAASIF----KGPVPPIVPFSLGS--LGFMTPF--HSEHY----KDYLDSVLRGP 343 (533)
Q Consensus 296 DGTlL~aar~~----~~~~~PILGIN~G~--LGFLt~~--~~ed~----~~~L~~ll~G~ 343 (533)
|+|++.+...+ ....+|++|..... -|.|..+ +..++ -+...++++|+
T Consensus 202 d~~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~G~l~~~~~~~~~~G~~aa~~a~~IL~G~ 261 (302)
T 3lkv_A 202 DNTVASAIEGMIVAANQAKTPVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGK 261 (302)
T ss_dssp CHHHHHTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhHHHHHHHHHhhcCCceeecccccccCCceEEEecCHHHHHHHHHHHHHHHHCcC
Confidence 99988765433 24678999966421 1233332 22222 24567788885
No 38
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=67.35 E-value=1.7 Score=42.60 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=45.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.++|+||-....+.. ..+.+||.+ .|+++.+-..... + . +.....++|.+|+.||-+
T Consensus 3 ~~~vliiqh~~~e~~----~~i~~~l~~-~G~~v~v~~~~~~----~--~------------~p~~~~~~d~lIl~GGp~ 59 (250)
T 3m3p_A 3 LKPVMIIQFSASEGP----GHFGDFLAG-EHIPFQVLRMDRS----D--P------------LPAEIRDCSGLAMMGGPM 59 (250)
T ss_dssp CCCEEEEESSSSCCC----HHHHHHHHH-TTCCEEEEEGGGT----C--C------------CCSCGGGSSEEEECCCSS
T ss_pred CCeEEEEECCCCCCH----HHHHHHHHH-CCCeEEEEeccCC----C--c------------CcCccccCCEEEECCCCC
Confidence 357899976543332 456777865 5666554221100 0 0 001124689999999976
Q ss_pred HH----------HHHHHhcCCCCCcEEEEeCCC
Q 009486 298 TV----------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 Tl----------L~aar~~~~~~~PILGIN~G~ 320 (533)
+. +...+.+...++|||||-+|.
T Consensus 60 ~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 92 (250)
T 3m3p_A 60 SANDDLPWMPTLLALIRDAVAQRVPVIGHCLGG 92 (250)
T ss_dssp CTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred cccccchHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 52 233333334578999999885
No 39
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=66.79 E-value=11 Score=38.94 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=52.0
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~--ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
++++||+.+.-. ++..++.+.|.+ .|+++. +-+.... ++....+... ...+.+. ....|+||.|||
T Consensus 44 ~rvlIVtd~~v~---~~~~~v~~~L~~-~g~~~~~~~~~~gE~-----~kt~~~v~~~--~~~l~~~~~~r~d~IIavGG 112 (368)
T 3qbe_A 44 HKVAVVHQPGLA---ETAEEIRKRLAG-KGVDAHRIEIPDAEA-----GKDLPVVGFI--WEVLGRIGIGRKDALVSLGG 112 (368)
T ss_dssp SEEEEEECGGGH---HHHHHHHHHHHH-TTCEEEEEECCSGGG-----GGBHHHHHHH--HHHHHHHTCCTTCEEEEEES
T ss_pred CEEEEEECccHH---HHHHHHHHHHHh-cCCcceEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCcEEEEECC
Confidence 789999976543 347889999976 566653 2121110 0000000000 0011111 345799999999
Q ss_pred chHHHHHHHhcC---CCCCcEEEEeC
Q 009486 296 DGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 296 DGTlL~aar~~~---~~~~PILGIN~ 318 (533)
|.++-+++.+. ..++|++-|.+
T Consensus 113 -Gsv~D~ak~~Aa~~~rgip~i~IPT 137 (368)
T 3qbe_A 113 -GAATDVAGFAAATWLRGVSIVHLPT 137 (368)
T ss_dssp -HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred -hHHHHHHHHHHHHhccCCcEEEECC
Confidence 99999888665 35788888776
No 40
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=66.75 E-value=2.7 Score=47.80 Aligned_cols=123 Identities=16% Similarity=0.093 Sum_probs=73.3
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC------cc--------ccccc--c---c
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS------YF--------SFVQT--W---K 275 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~------~~--------~~i~~--~---~ 275 (533)
.++++|+|++-- +.|-.-...+-+++.+.. .+.+||--.+-.+.+..... .. +.+.+ . .
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~~-~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~~ 476 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKK 476 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECCCSGG
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHHH-CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCCCcHH
Confidence 457899999874 567777777888888764 47788753333333321100 00 01111 0 0
Q ss_pred chHHHhhh--CCCccEEEEEeCchHHHHHHHhc------CCCCCcEEEEeC-------C---CCccCccCCcchHHHHHH
Q 009486 276 DEKEILLL--HTKVDLVVTLGGDGTVLWAASIF------KGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLD 337 (533)
Q Consensus 276 ~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~------~~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~ 337 (533)
......+. ..++|.+|++|||||+-.|..+. ....+||+||.- | ++||-|.+ +.+-++++
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~--~~~~~aid 554 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTAL--NTICTTCD 554 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHH--HHHHHHHH
Confidence 01111111 24789999999999998886553 234799999974 2 67776643 35667777
Q ss_pred HHHc
Q 009486 338 SVLR 341 (533)
Q Consensus 338 ~ll~ 341 (533)
++..
T Consensus 555 ~i~~ 558 (762)
T 3o8l_A 555 RIKQ 558 (762)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7754
No 41
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=64.74 E-value=3 Score=48.37 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhh-hcCC------cc--------ccccc-----c
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL-TESS------YF--------SFVQT-----W 274 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~-~~~~------~~--------~~i~~-----~ 274 (533)
.++++|+|++-- +.|..-...+-+++.... .+.+||--.+-.+.+. .... .. +.+.+ +
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~ 647 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCMS-RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTNRTLPN 647 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSCEECCCTT
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEeccCCCCcc
Confidence 346899999875 556666666778887754 4678876444333333 1000 00 00110 0
Q ss_pred c-chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEeC-------C---CCccCccCCcchHHHH
Q 009486 275 K-DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDY 335 (533)
Q Consensus 275 ~-~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~~------~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~ 335 (533)
. ....+.+. ..++|.+|++|||||+-.+.++.. ..++||+||.- | ++||-|.++ .+-++
T Consensus 648 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~--~i~ea 725 (941)
T 3opy_B 648 DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLN--SFMEY 725 (941)
T ss_dssp TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH--HHHHH
T ss_pred cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHH--HHHHH
Confidence 0 00111111 247899999999999877655432 13799999974 2 788866543 44556
Q ss_pred HHHHH
Q 009486 336 LDSVL 340 (533)
Q Consensus 336 L~~ll 340 (533)
++++.
T Consensus 726 id~i~ 730 (941)
T 3opy_B 726 CDVIK 730 (941)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 42
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=64.58 E-value=2.7 Score=47.79 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC----cc-----------ccccc--c-c--
Q 009486 217 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS----YF-----------SFVQT--W-K-- 275 (533)
Q Consensus 217 ~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~----~~-----------~~i~~--~-~-- 275 (533)
++++|+|++-- +.|-.-...+-+++.... .+.+||--.+-.+.+..++. .+ +.+.+ . +
T Consensus 392 ~~~~IgIltsGGdapGmNaaIravv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~~ 470 (766)
T 3o8o_B 392 KRLKIAIVNVGAPAGGINSAVYSMATYCMS-QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPEE 470 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTCCCCCCGGG
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHHH-CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEccCCCCCcc
Confidence 35899999874 556666666778887754 46777764433333321100 00 00110 0 0
Q ss_pred -chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEeC-------C---CCccCccCCcchHHHHH
Q 009486 276 -DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYL 336 (533)
Q Consensus 276 -~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~~------~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L 336 (533)
....+.+. ..++|.+|++|||||+-.+.++.. ..++||+||.- | ++||-|.++ .+-+++
T Consensus 471 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~--~~~~ai 548 (766)
T 3o8o_B 471 ADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALN--ALMEYC 548 (766)
T ss_dssp GCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHH--HHHHHH
T ss_pred chHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHH--HHHHHH
Confidence 00111111 236899999999999987766643 13689999974 2 778866543 445566
Q ss_pred HHHH
Q 009486 337 DSVL 340 (533)
Q Consensus 337 ~~ll 340 (533)
+++.
T Consensus 549 d~i~ 552 (766)
T 3o8o_B 549 DVVK 552 (766)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 43
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=63.99 E-value=3.1 Score=48.41 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=69.1
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhh-hcCC------cc--------ccccc-----cc
Q 009486 217 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL-TESS------YF--------SFVQT-----WK 275 (533)
Q Consensus 217 ~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~-~~~~------~~--------~~i~~-----~~ 275 (533)
.+++|+|++-- +.|-.-...+-++++... .+.+||--.+-...+. .... .. +.+.+ +.
T Consensus 597 ~~~rIgIltsGGdaPGmNAaIravV~~a~~-~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~ 675 (989)
T 3opy_A 597 SRLNIAIIHVGAPTSALNPATRVATLNSLA-KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTNRSLPSD 675 (989)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHHH-TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSCCBCCCGGG
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHHH-CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEeccCCCCchh
Confidence 46799999874 556666667778887764 5778876444333333 1100 00 00111 01
Q ss_pred chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC---C---CCCcEEEEeC-------C---CCccCccCCcchHHHHHH
Q 009486 276 DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK---G---PVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLD 337 (533)
Q Consensus 276 ~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~~---~---~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L~ 337 (533)
....+.+. ..++|.+|++|||||+-.+.++.. . .++||+||.- | ++||=|.++ .+-++++
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn--~~~eaId 753 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLN--TLSGYCD 753 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH--HHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHH--HHHHHHH
Confidence 11111111 236899999999999966554432 1 3799999974 2 677765432 3445566
Q ss_pred HHH
Q 009486 338 SVL 340 (533)
Q Consensus 338 ~ll 340 (533)
++.
T Consensus 754 ~i~ 756 (989)
T 3opy_A 754 AVK 756 (989)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 44
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=63.97 E-value=2.9 Score=47.66 Aligned_cols=122 Identities=19% Similarity=0.121 Sum_probs=70.6
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhh-hcCC------cc--------ccccc--c---
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL-TESS------YF--------SFVQT--W--- 274 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~-~~~~------~~--------~~i~~--~--- 274 (533)
+.+++|+|++-- +.|-.-...+-+++.... .+.+||--.+-.+.+. .... .. +.+.+ .
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LGTsR~~~~ 469 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCLS-HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVAS 469 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTCCBCCCGG
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceeccCCCCch
Confidence 457899999874 556666666777777754 4677776444333333 1100 00 01111 0
Q ss_pred cchHHHhhh--CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEeC-------C---CCccCccCCcchHHHHH
Q 009486 275 KDEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYL 336 (533)
Q Consensus 275 ~~~~~~~~~--~~~~DlVIvLGGDGTlL~aar~~~------~~~~PILGIN~-------G---~LGFLt~~~~ed~~~~L 336 (533)
.....+.+. .-++|.+|++|||||+-.+.++.. ..++||+||.- | ++||=|.++ .+-+++
T Consensus 470 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~--~~~eai 547 (787)
T 3o8o_A 470 EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLN--ALVNYT 547 (787)
T ss_dssp GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHH--HHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHH--HHHHHH
Confidence 000111111 247899999999999988776542 13699999974 2 677766543 345566
Q ss_pred HHHH
Q 009486 337 DSVL 340 (533)
Q Consensus 337 ~~ll 340 (533)
+++.
T Consensus 548 d~i~ 551 (787)
T 3o8o_A 548 DDIK 551 (787)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 45
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=63.73 E-value=22 Score=35.15 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=66.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE--ccch-hHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV--EPRV-RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~v--e~~~-a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.|++..-...........++++.|.+ .+..+++ .... ...+........+. .|. +..++...+|++|+=||=
T Consensus 244 ~vlv~~G~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~~~~~~l~~~~~~v~~~-~~~---~~~~~l~~ad~~v~~~g~ 318 (412)
T 3otg_A 244 LVYLTLGTSSGGTVEVLRAAIDGLAG-LDADVLVASGPSLDVSGLGEVPANVRLE-SWV---PQAALLPHVDLVVHHGGS 318 (412)
T ss_dssp EEEEECTTTTCSCHHHHHHHHHHHHT-SSSEEEEECCSSCCCTTCCCCCTTEEEE-SCC---CHHHHGGGCSEEEESCCH
T ss_pred EEEEEcCCCCcCcHHHHHHHHHHHHc-CCCEEEEEECCCCChhhhccCCCcEEEe-CCC---CHHHHHhcCcEEEECCch
Confidence 45554433223345566777777765 3555544 2211 11111100111111 122 245667789999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEeCC-------------CCccCccC---CcchHHHHHHHHHcC
Q 009486 297 GTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTPF---HSEHYKDYLDSVLRG 342 (533)
Q Consensus 297 GTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~~---~~ed~~~~L~~ll~G 342 (533)
+|++-++.. ++|++.+..+ ..|++.+. +++++.++|..+++.
T Consensus 319 ~t~~Ea~a~----G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 376 (412)
T 3otg_A 319 GTTLGALGA----GVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE 376 (412)
T ss_dssp HHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh----CCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 999988764 5799987653 25776653 677888888888764
No 46
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=62.76 E-value=14 Score=37.45 Aligned_cols=87 Identities=8% Similarity=0.027 Sum_probs=50.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGGD 296 (533)
.++++||+.+.-. . ...++.+.|. .++.+.++.... ++....+... .....+. ....|+||.|||
T Consensus 28 ~~kvliVtd~~v~--~-~~~~v~~~L~--~~~~~~~~~ge~------~~~~~~v~~~--~~~~~~~~~~r~d~IIavGG- 93 (348)
T 1ujn_A 28 AGPAALLFDRRVE--G-FAQEVAKALG--VRHLLGLPGGEA------AKSLEVYGKV--LSWLAEKGLPRNATLLVVGG- 93 (348)
T ss_dssp SSCEEEEEEGGGH--H-HHHHHHHHHT--CCCEEEECCSGG------GSSHHHHHHH--HHHHHHHTCCTTCEEEEEES-
T ss_pred CCEEEEEECCcHH--H-HHHHHHHHhc--cCeEEEECCCCC------CCCHHHHHHH--HHHHHHcCCCCCCEEEEECC-
Confidence 4789999975432 2 6778888885 345533322110 0000100000 0011111 245699999999
Q ss_pred hHHHHHHHhcC---CCCCcEEEEeC
Q 009486 297 GTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 297 GTlL~aar~~~---~~~~PILGIN~ 318 (533)
|.++-+++.+. ..++|++-|.+
T Consensus 94 Gsv~D~ak~~A~~~~rgip~i~IPT 118 (348)
T 1ujn_A 94 GTLTDLGGFVAATYLRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred cHHHHHHHHHHHHhccCCCEEEecC
Confidence 99999998776 45789988886
No 47
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=62.21 E-value=62 Score=27.25 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=62.5
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE--
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL-- 293 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL-- 293 (533)
.++.+|+||- +++.. ...+..+|.+ .|+.|..-.+..+.+. .+ ....+|+||+=
T Consensus 5 ~~~~~ILivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~al~----------------~l--~~~~~dlii~D~~ 60 (154)
T 3gt7_A 5 NRAGEILIVE--DSPTQ---AEHLKHILEE-TGYQTEHVRNGREAVR----------------FL--SLTRPDLIISDVL 60 (154)
T ss_dssp --CCEEEEEC--SCHHH---HHHHHHHHHT-TTCEEEEESSHHHHHH----------------HH--TTCCCSEEEEESC
T ss_pred cCCCcEEEEe--CCHHH---HHHHHHHHHH-CCCEEEEeCCHHHHHH----------------HH--HhCCCCEEEEeCC
Confidence 4467888885 34433 3445556654 5677655433222111 01 12357888882
Q ss_pred --eCch-HHHHHHHhcC-CCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHcCCc
Q 009486 294 --GGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 294 --GGDG-TlL~aar~~~-~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~G~y 344 (533)
|+|| .+++..+... ...+||+-+. .|-.+||. +++++++...|..++.+.-
T Consensus 61 l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 61 MPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp CSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 6677 4566666543 2567887765 36677766 4888899999999887643
No 48
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=61.72 E-value=9.8 Score=34.87 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=43.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-C-CCccEEEEEeCch
Q 009486 220 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-H-TKVDLVVTLGGDG 297 (533)
Q Consensus 220 ~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~-~~~DlVIvLGGDG 297 (533)
+|+||-+.+.- ...+++||++ .|+++.+-+.... .+.+.+. . .+.|.+|..||-|
T Consensus 2 ~i~iiDn~~s~-----~~~i~~~l~~-~G~~~~v~~~~~~-----------------~~~i~~~l~~~~~~~iil~gGpg 58 (192)
T 1i1q_B 2 DILLLDNIDSF-----TWNLADQLRT-NGHNVVIYRNHIP-----------------AQTLIDRLATMKNPVLMLSPGPG 58 (192)
T ss_dssp EEEEEECSCSS-----HHHHHHHHHH-TTCEEEEEETTSC-----------------SHHHHHHHTTCSSEEEEECCCSS
T ss_pred cEEEEECCccH-----HHHHHHHHHH-CCCeEEEEECCCC-----------------HHHHHHHhhhccCCeEEECCCCc
Confidence 58888866542 4677888876 4666655322100 0111111 1 1234488889988
Q ss_pred HHH-----H-HHHhcCCCCCcEEEEeCCC
Q 009486 298 TVL-----W-AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 TlL-----~-aar~~~~~~~PILGIN~G~ 320 (533)
+.- . ..+.+ ..++|||||-+|.
T Consensus 59 ~~~~~~~~~~l~~~~-~~~~PilGIC~G~ 86 (192)
T 1i1q_B 59 VPSEAGCMPELLTRL-RGKLPIIGICLGH 86 (192)
T ss_dssp CGGGSTTHHHHHHHH-BTTBCEEEETHHH
T ss_pred CchhCchHHHHHHHH-hcCCCEEEECcCh
Confidence 831 1 22223 3568999999885
No 49
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=61.21 E-value=66 Score=26.20 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=58.7
Q ss_pred EeeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEE
Q 009486 211 SLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLV 290 (533)
Q Consensus 211 ~l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlV 290 (533)
.-.|..+..+|+||- +++... ..+...|.. .|+.|..-.+....+. .+. ...+|+|
T Consensus 11 ~~~~~~~~~~ilivd--d~~~~~---~~l~~~L~~-~g~~v~~~~~~~~al~----------------~l~--~~~~dlv 66 (137)
T 2pln_A 11 GSLVPRGSMRVLLIE--KNSVLG---GEIEKGLNV-KGFMADVTESLEDGEY----------------LMD--IRNYDLV 66 (137)
T ss_dssp ----CTTCSEEEEEC--SCHHHH---HHHHHHHHH-TTCEEEEESCHHHHHH----------------HHH--HSCCSEE
T ss_pred CcccCCCCCeEEEEe--CCHHHH---HHHHHHHHH-cCcEEEEeCCHHHHHH----------------HHH--cCCCCEE
Confidence 344556678899885 344443 445555554 5677664333222110 011 1358999
Q ss_pred EEEeC-ch-HHHHHHHhcCCC-CCcEEEEe-------------CCCCccCcc-C-CcchHHHHHHHHHcC
Q 009486 291 VTLGG-DG-TVLWAASIFKGP-VPPIVPFS-------------LGSLGFMTP-F-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 291 IvLGG-DG-TlL~aar~~~~~-~~PILGIN-------------~G~LGFLt~-~-~~ed~~~~L~~ll~G 342 (533)
| +.+ || .+++..+.. . .+||+-+. .|-.+||.. + +++++...|..++.+
T Consensus 67 i-~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 67 M-VSDKNALSFVSRIKEK--HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp E-ECSTTHHHHHHHHHHH--STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred E-EcCccHHHHHHHHHhc--CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9 654 55 245555544 4 67887764 366777654 6 777888888887765
No 50
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=60.05 E-value=5.6 Score=45.36 Aligned_cols=121 Identities=15% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCC-----ccc-----------ccc-----c
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS-----YFS-----------FVQ-----T 273 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~-----~~~-----------~i~-----~ 273 (533)
.+.++|+|++-- +.|-.-...+-+++.+.. .+++||--.+-.+.+..... .+. .+. .
T Consensus 3 ~~~krIgIltsGGdaPGmNaaIravvr~a~~-~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 3 QKKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-FGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp --CCEEEEEEESSCCTTHHHHHHHHHHHHHH-TTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCCcEEEEEeeCCCchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 356899999875 556666667778888764 57888764443333332210 000 010 0
Q ss_pred ccchHHHhh-----hCCCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEeC-------C
Q 009486 274 WKDEKEILL-----LHTKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL-------G 319 (533)
Q Consensus 274 ~~~~~~~~~-----~~~~~DlVIvLGGDGTlL~aar~~----------------------~~~~~PILGIN~-------G 319 (533)
+........ ...++|.+|++|||||+-.|..+. ....+||+||.- |
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 101111110 124689999999999998775321 124789999873 3
Q ss_pred ---CCccCccCCcchHHHHHHHH
Q 009486 320 ---SLGFMTPFHSEHYKDYLDSV 339 (533)
Q Consensus 320 ---~LGFLt~~~~ed~~~~L~~l 339 (533)
++||-|.++ .+-++++++
T Consensus 162 TD~TiGfdTAl~--~i~eaid~i 182 (787)
T 3o8o_A 162 TDSTIGAYSALE--RICEMVDYI 182 (787)
T ss_dssp SSCCEEHHHHHH--HHHHHHHHH
T ss_pred CCCCCCcHHHHH--HHHHHHHHH
Confidence 778866543 344555555
No 51
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=59.83 E-value=70 Score=26.12 Aligned_cols=105 Identities=10% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-C-CCccEEEE--
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-H-TKVDLVVT-- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~-~~~DlVIv-- 292 (533)
.+.+|+||- +++... ..+..+|.+..+++|..-.+..+.+. .+ . ..+|+||+
T Consensus 3 ~~~~ilivd--d~~~~~---~~l~~~L~~~~~~~v~~~~~~~~a~~-------------------~l~~~~~~dlvi~D~ 58 (140)
T 3lua_A 3 LDGTVLLID--YFEYER---EKTKIIFDNIGEYDFIEVENLKKFYS-------------------IFKDLDSITLIIMDI 58 (140)
T ss_dssp CCCEEEEEC--SCHHHH---HHHHHHHHHHCCCEEEEECSHHHHHT-------------------TTTTCCCCSEEEECS
T ss_pred CCCeEEEEe--CCHHHH---HHHHHHHHhccCccEEEECCHHHHHH-------------------HHhcCCCCcEEEEeC
Confidence 356888884 344443 44555554425777764433322211 11 1 35888887
Q ss_pred -E--eCch-HHHHHHHhc-CCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCce
Q 009486 293 -L--GGDG-TVLWAASIF-KGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 293 -L--GGDG-TlL~aar~~-~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ 345 (533)
+ |.|| .+++..+.. ....+||+-+. .|-.+||.. ++++++...|..+++|...
T Consensus 59 ~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 59 AFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp CSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 2 4455 344555541 13567887654 466777664 8899999999999987644
No 52
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.72 E-value=77 Score=29.43 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=64.8
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEE
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTL 293 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvL 293 (533)
.+.++||++... .++-...+...+.+.+.+ .|+++.+...-... ... ...+. ....++|.||+.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~ 68 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIER-LGGTAIALDAGRND-QTQ------------VSQIQTLIAQKPDAIIEQ 68 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHHCCSEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEEcCCCCH-HHH------------HHHHHHHHHcCCCEEEEe
Confidence 445789999864 555556677778888866 57777664211100 000 00011 123579999999
Q ss_pred eCchHHH-HHHHhcCCCCCcEEEEeCCCCccCccCCcchHH---HHHHHHHc
Q 009486 294 GGDGTVL-WAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 294 GGDGTlL-~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~---~~L~~ll~ 341 (533)
+.|.+.. ...+.+...++|++-++...-+.+.-+..++.. .+.+.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 69 LGNLDVLNPWLQKINDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp SSCHHHHHHHHHHHHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCChhhhHHHHHHHHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHH
Confidence 9985433 345555556899999987543333344455543 34555555
No 53
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=58.29 E-value=9.9 Score=39.31 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=26.0
Q ss_pred cEEEEEeCchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 288 DLVVTLGGDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 288 DlVIvLGGDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
|+||.||| |.++-+++.+. ..++|++-|.+
T Consensus 107 d~iIalGG-Gsv~D~ak~~Aa~~~rgip~i~IPT 139 (393)
T 1sg6_A 107 TVVIALGG-GVIGDLTGFVASTYMRGVRYVQVPT 139 (393)
T ss_dssp CEEEEEES-HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred CEEEEECC-cHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99999999 99999988776 45789988876
No 54
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=57.98 E-value=61 Score=30.71 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
..++|+++..+.........+.+.+.+++ .|+++.... +.. .+ ........+..++|.|++ +.|
T Consensus 132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~-~~~---~~----------~~~~~~~~l~~~~dai~~-~~D 195 (295)
T 3lft_A 132 NVKTIGALYSSSEDNSKTQVEEFKAYAEK-AGLTVETFA-VPS---TN----------EIASTVTVMTSKVDAIWV-PID 195 (295)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEE-ESS---GG----------GHHHHHHHHTTTCSEEEE-CSC
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHH-cCCEEEEEe-cCC---HH----------HHHHHHHHHHhcCCEEEE-CCc
Confidence 46899999988665555556677777765 577754321 100 00 001223344567887766 678
Q ss_pred hHHHHHHH---h-cCCCCCcEEEEeC---CCCccCccCCcc--hHH----HHHHHHHcCC
Q 009486 297 GTVLWAAS---I-FKGPVPPIVPFSL---GSLGFMTPFHSE--HYK----DYLDSVLRGP 343 (533)
Q Consensus 297 GTlL~aar---~-~~~~~~PILGIN~---G~LGFLt~~~~e--d~~----~~L~~ll~G~ 343 (533)
.+.+.+.+ . ....++||+|++- +. |-||.+... ++- +.+.++++|+
T Consensus 196 ~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~-~~Lttv~~~~~~~G~~Aa~~l~~~l~g~ 254 (295)
T 3lft_A 196 NTIASGFPTVVSSNQSSKKPIYPSATAMVEV-GGLASVVIDQHDLGVATGKMIVQVLKGA 254 (295)
T ss_dssp HHHHHTHHHHHHHTTTTCCCEEESSHHHHTT-TCCEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHcCCCEEeCCHHHHhc-CcEEEEecCHHHHHHHHHHHHHHHHCcC
Confidence 88776433 2 2356899999863 22 446665432 222 3455666774
No 55
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=57.64 E-value=16 Score=33.52 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=44.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch---
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG--- 297 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG--- 297 (533)
|+||-+.+.- ...+.++|++ .|+++.+-+.... ...++.. .++|.+|.-||-|
T Consensus 4 i~iid~~~s~-----~~~~~~~l~~-~G~~~~v~~~~~~----------------~~~~~~~--~~~dglil~gG~~~~~ 59 (195)
T 1qdl_B 4 TLIIDNYDSF-----VYNIAQIVGE-LGSYPIVIRNDEI----------------SIKGIER--IDPDRLIISPGPGTPE 59 (195)
T ss_dssp EEEEECSCSS-----HHHHHHHHHH-TTCEEEEEETTTS----------------CHHHHHH--HCCSEEEECCCSSCTT
T ss_pred EEEEECCCch-----HHHHHHHHHh-CCCEEEEEeCCCC----------------CHHHHhh--CCCCEEEECCCCCChh
Confidence 8888876654 2467788876 4666554221000 0011111 1579888888843
Q ss_pred ------HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 ------TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 ------TlL~aar~~~~~~~PILGIN~G~ 320 (533)
..+...+.+ ...+|||||-+|.
T Consensus 60 ~~~~~~~~~~~i~~~-~~~~PvLGIC~G~ 87 (195)
T 1qdl_B 60 KREDIGVSLDVIKYL-GKRTPILGVCLGH 87 (195)
T ss_dssp SHHHHTTHHHHHHHH-TTTSCEEEETHHH
T ss_pred hhhhhhHHHHHHHHh-cCCCcEEEEehHH
Confidence 233555555 4679999999886
No 56
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=57.49 E-value=5.5 Score=46.37 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcc-----c-----------ccc-----c
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYF-----S-----------FVQ-----T 273 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~-----~-----------~i~-----~ 273 (533)
..+++|+|++-- +.|-.-...+-+++.... .|++||--.+-.+.+......+ . .+. .
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGIF-YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHHH-TTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 446899999875 556666667778887764 6888876444333333221000 0 010 0
Q ss_pred ccchHHHh---h--hCCCccEEEEEeCchHHHHHHHhc----------C------------CCCCcEEEEeC-------C
Q 009486 274 WKDEKEIL---L--LHTKVDLVVTLGGDGTVLWAASIF----------K------------GPVPPIVPFSL-------G 319 (533)
Q Consensus 274 ~~~~~~~~---~--~~~~~DlVIvLGGDGTlL~aar~~----------~------------~~~~PILGIN~-------G 319 (533)
+....... + ...++|.+|++|||||+-.|..+. . ...+||+||.- |
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 10011111 1 125789999999999998776421 1 14689999873 3
Q ss_pred ---CCccCccCCcchHHHHHHHHHcCC
Q 009486 320 ---SLGFMTPFHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 320 ---~LGFLt~~~~ed~~~~L~~ll~G~ 343 (533)
++||-|.++ .+-++++++..--
T Consensus 367 TD~TiGFdTAl~--~i~eaId~I~~TA 391 (989)
T 3opy_A 367 TDSTIGAYSSLE--RIIELVDYIDATA 391 (989)
T ss_dssp CSCCEEHHHHHH--HHHHHHHHHHSSC
T ss_pred CCCCCChhhHHH--HHHHHHHHHHhhh
Confidence 678766432 4556777766543
No 57
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=56.70 E-value=16 Score=33.32 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL----------~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-||-++.- ...+.+...+.||+||-.|.
T Consensus 37 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~ 82 (196)
T 2nv0_A 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGL 82 (196)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH
T ss_pred hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHH
Confidence 3589999999976653 22233334678999999885
No 58
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=56.57 E-value=5.9 Score=46.01 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcC-Ccc-----c-----------ccc-----
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES-SYF-----S-----------FVQ----- 272 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~-~~~-----~-----------~i~----- 272 (533)
.++++|+|++-- +.|-.-...+-+++.... .|++||--.+-.+.+.... ..+ . .+.
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHHH-TTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHHH-CCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 447899999875 456666667778887764 5778876444333333221 000 0 010
Q ss_pred cccchHHH----hh-hCCCccEEEEEeCchHHHHHHHhc----------C------------CCCCcEEEEeC-------
Q 009486 273 TWKDEKEI----LL-LHTKVDLVVTLGGDGTVLWAASIF----------K------------GPVPPIVPFSL------- 318 (533)
Q Consensus 273 ~~~~~~~~----~~-~~~~~DlVIvLGGDGTlL~aar~~----------~------------~~~~PILGIN~------- 318 (533)
.+...... .. ...++|.+|++|||||+-.|..+. . ...+||+||.-
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 01001000 00 124789999999999998875421 0 24689999873
Q ss_pred C---CCccCccCCcchHHHHHHHHHcC
Q 009486 319 G---SLGFMTPFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 319 G---~LGFLt~~~~ed~~~~L~~ll~G 342 (533)
| ++||-|.+ +.+-++++++..-
T Consensus 338 gTD~TiGfdTAv--~~i~eaId~I~~t 362 (941)
T 3opy_B 338 STDATIGAFSSL--DRICRAIDYIDAT 362 (941)
T ss_dssp SCSSCEEHHHHH--HHHHHHHHHHHSC
T ss_pred CCCCCCChHHHH--HHHHHHHHHHHhh
Confidence 3 67886643 3456777777553
No 59
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=56.40 E-value=6.1 Score=44.94 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcC-Ccc-----c-----------ccc-----c
Q 009486 217 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES-SYF-----S-----------FVQ-----T 273 (533)
Q Consensus 217 ~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~-~~~-----~-----------~i~-----~ 273 (533)
+.++|+|++-- +.|-.-...+-+++.... .+++||--.+-.+.+.... ..+ . .+. .
T Consensus 2 ~~krIgIltsGGdapGmNaaIravvr~a~~-~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 2 PQKAIAVMTSGGDAPGMNSNVRAIVRSAIF-KGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-CCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 35789999874 456666667778877754 4678875443333333221 000 0 000 0
Q ss_pred ccchHHHh---h--hCCCccEEEEEeCchHHHHHHHh-----------cC-----------CCCCcEEEEeC-------C
Q 009486 274 WKDEKEIL---L--LHTKVDLVVTLGGDGTVLWAASI-----------FK-----------GPVPPIVPFSL-------G 319 (533)
Q Consensus 274 ~~~~~~~~---~--~~~~~DlVIvLGGDGTlL~aar~-----------~~-----------~~~~PILGIN~-------G 319 (533)
+....... + ...++|.+|++|||||+-.|..+ .. ...+||+||.- |
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 10010000 0 12478999999999999877532 11 24789999973 3
Q ss_pred ---CCccCccCCcchHHHHHHHH
Q 009486 320 ---SLGFMTPFHSEHYKDYLDSV 339 (533)
Q Consensus 320 ---~LGFLt~~~~ed~~~~L~~l 339 (533)
++||-|.++ .+-++++++
T Consensus 161 TD~TiGfdTA~~--~i~eaid~i 181 (766)
T 3o8o_B 161 TDATIGAYSALD--RICKAIDYV 181 (766)
T ss_dssp CSCCBTHHHHHH--HHHHHHHHH
T ss_pred CCCCCChhHHHH--HHHHHHHHH
Confidence 678866543 344555555
No 60
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=55.78 E-value=24 Score=31.89 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCccEEEEEeCchHHHH-------HHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVLW-------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~-------aar~~~~~~~PILGIN~G~ 320 (533)
.++|.+|.-||-++... ....+...++|||||-.|.
T Consensus 36 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~PilGIC~G~ 78 (186)
T 2ywj_A 36 EGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCAGM 78 (186)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETHHH
T ss_pred ccCCEEEECCCCchhhhhhhhccCHHHHHHhcCCcEEEECHHH
Confidence 45799999999776542 1122225678999999874
No 61
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=55.46 E-value=39 Score=33.02 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=41.9
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC--------------CCCccCcc---CCcchHHHHHHHHHcC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL--------------GSLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~--------------G~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++...+|++|+=||=||++-++.. ++|++.+.. +..|.+.+ ++++++.++|..+++.
T Consensus 293 ~ll~~ad~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~ 366 (402)
T 3ia7_A 293 SVLAHARACLTHGTTGAVLEAFAA----GVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD 366 (402)
T ss_dssp HHHTTEEEEEECCCHHHHHHHHHT----TCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCCHHHHHHHHHh----CCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcC
Confidence 566789999999999999988753 678886654 23455443 3667788888888764
No 62
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=53.80 E-value=95 Score=25.79 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE-EccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE---
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY-VEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT--- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~-ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv--- 292 (533)
.+.+|+||- +++.. ...+..+|....++.+. .-.+....+. .+. ...+|+||+
T Consensus 4 ~~~~ILivd--d~~~~---~~~l~~~L~~~~~~~v~~~~~~~~~a~~----------------~l~--~~~~dlii~D~~ 60 (153)
T 3cz5_A 4 STARIMLVD--DHPIV---REGYRRLIERRPGYAVVAEAADAGEAYR----------------LYR--ETTPDIVVMDLT 60 (153)
T ss_dssp CCEEEEEEC--SCHHH---HHHHHHHHTTSTTEEEEEEESSHHHHHH----------------HHH--TTCCSEEEECSC
T ss_pred cccEEEEEC--CcHHH---HHHHHHHHhhCCCcEEEEEeCCHHHHHH----------------HHh--cCCCCEEEEecC
Confidence 356788875 33433 34555666433577765 3222221110 011 234788886
Q ss_pred -EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCceE
Q 009486 293 -LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPISI 346 (533)
Q Consensus 293 -LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~i 346 (533)
-|.|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.|...+
T Consensus 61 l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 129 (153)
T 3cz5_A 61 LPGPGGIEATRHIRQW-DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAM 129 (153)
T ss_dssp CSSSCHHHHHHHHHHH-CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEE
T ss_pred CCCCCHHHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccC
Confidence 24466 355555554 3457877664 466777654 88899999999999876543
No 63
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=53.79 E-value=15 Score=34.38 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL----------~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.||.-||-++.. ...+.+...+.||+||-.|.
T Consensus 59 ~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 104 (219)
T 1q7r_A 59 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGL 104 (219)
T ss_dssp TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHH
T ss_pred hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHH
Confidence 4689999999976542 23333334678999998874
No 64
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=53.76 E-value=13 Score=40.62 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.9
Q ss_pred hCCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 283 LHTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 283 ~~~~~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
....+|.+|+-||=|+ ++.+++.+....+|+|||-+|.
T Consensus 347 ~L~~~DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIClG~ 389 (535)
T 3nva_A 347 ILGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGF 389 (535)
T ss_dssp TTTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred hccCCCEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEECcch
Confidence 3567999999998763 3455555555678999999873
No 65
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=53.68 E-value=13 Score=34.51 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=24.9
Q ss_pred CccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 009486 286 KVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL----------~aar~~~~~~~PILGIN~G~ 320 (533)
++|.||.-||..+.. ...+.+...+.||+||-.|.
T Consensus 57 ~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 101 (208)
T 2iss_D 57 MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGV 101 (208)
T ss_dssp GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH
T ss_pred hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHH
Confidence 589999999976643 23344434678999998874
No 66
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=52.82 E-value=98 Score=25.69 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=40.0
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCceE
Q 009486 286 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPISI 346 (533)
Q Consensus 286 ~~DlVIv----LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~i 346 (533)
.+|+||+ -|+|| .+++..+.. ...+||+-+. .|-.|||.. ++++++..+|..++.|.-.+
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRSY-ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 4788887 24555 455555554 3567887654 467777664 78889999999999886544
Q ss_pred E
Q 009486 347 T 347 (533)
Q Consensus 347 e 347 (533)
.
T Consensus 140 ~ 140 (152)
T 3eul_A 140 A 140 (152)
T ss_dssp -
T ss_pred C
Confidence 3
No 67
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=51.86 E-value=24 Score=31.96 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=46.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC-----
Q 009486 221 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG----- 295 (533)
Q Consensus 221 VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG----- 295 (533)
|+|+-....- ...+.++|++ .|.++.+-+... ...++.. .++|.+|.-||
T Consensus 3 i~iid~~~~~-----~~~~~~~l~~-~G~~~~~~~~~~-----------------~~~~~~~--~~~dglil~Gg~~~~~ 57 (189)
T 1wl8_A 3 IVIMDNGGQY-----VHRIWRTLRY-LGVETKIIPNTT-----------------PLEEIKA--MNPKGIIFSGGPSLEN 57 (189)
T ss_dssp EEEEECSCTT-----HHHHHHHHHH-TTCEEEEEETTC-----------------CHHHHHH--TCCSEEEECCCSCTTC
T ss_pred EEEEECCCch-----HHHHHHHHHH-CCCeEEEEECCC-----------------ChHHhcc--cCCCEEEECCCCChhh
Confidence 7777665443 3467788866 466655422100 0011111 35899999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~ 320 (533)
+|.++...+.+...+.||+||-.|.
T Consensus 58 ~~~~~~~i~~~~~~~~PilGIC~G~ 82 (189)
T 1wl8_A 58 TGNCEKVLEHYDEFNVPILGICLGH 82 (189)
T ss_dssp CTTHHHHHHTGGGTCSCEEEETHHH
T ss_pred hhhHHHHHHHHhhCCCeEEEEcHHH
Confidence 3555667776645679999998885
No 68
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=51.73 E-value=1e+02 Score=25.56 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=60.3
Q ss_pred eecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCC-eEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEE
Q 009486 213 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVV 291 (533)
Q Consensus 213 ~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~g-i~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVI 291 (533)
.+...+.+|+||- +++.. ...+..+|....+ ..|..-.+..+.+. .+ ....+|+||
T Consensus 15 ~~~~~m~~iLivd--d~~~~---~~~l~~~L~~~~~~~~v~~~~~~~~al~----------------~l--~~~~~dlii 71 (150)
T 4e7p_A 15 VPRGSHMKVLVAE--DQSML---RDAMCQLLTLQPDVESVLQAKNGQEAIQ----------------LL--EKESVDIAI 71 (150)
T ss_dssp -----CEEEEEEC--SCHHH---HHHHHHHHHTSTTEEEEEEESSHHHHHH----------------HH--TTSCCSEEE
T ss_pred CCCCCccEEEEEc--CCHHH---HHHHHHHHHhCCCcEEEEEECCHHHHHH----------------Hh--hccCCCEEE
Confidence 3445567888886 34433 3455566654322 34443332222110 00 123578888
Q ss_pred E----EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHcCCce
Q 009486 292 T----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 292 v----LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~G~y~ 345 (533)
+ -++|| .+++..+.. ...+||+-+. .|-.|||. +++++++...|..+++|+-.
T Consensus 72 ~D~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 72 LDVEMPVKTGLEVLEWIRSE-KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp ECSSCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred EeCCCCCCcHHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 7 24566 355555553 3567887765 36677765 48889999999999988644
No 69
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=51.63 E-value=22 Score=35.16 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=25.7
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEe
Q 009486 280 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFS 317 (533)
Q Consensus 280 ~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN 317 (533)
+.++...+|++|+-|| +|+.-++.. ++|.+-|.
T Consensus 219 m~~~m~~aDlvI~~gG-~T~~E~~~~----g~P~i~ip 251 (282)
T 3hbm_A 219 IAKLMNESNKLIISAS-SLVNEALLL----KANFKAIC 251 (282)
T ss_dssp HHHHHHTEEEEEEESS-HHHHHHHHT----TCCEEEEC
T ss_pred HHHHHHHCCEEEECCc-HHHHHHHHc----CCCEEEEe
Confidence 3455678999999999 898887754 57888776
No 70
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=51.24 E-value=11 Score=37.21 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=44.1
Q ss_pred hhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 281 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 281 ~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
.++...+|++|+=||=||++-++.. ++|++.+..+ ..|++.+ ++++++.++|..++..
T Consensus 274 ~~~l~~~d~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 274 DVVAPTCDLLVHHAGGVSTLTGLSA----GVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp HHHGGGCSEEEECSCTTHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHhhCCEEEeCCcHHHHHHHHHh----CCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 3456789999999999999988864 6799998652 3566554 4577888888888764
No 71
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=50.70 E-value=5.1 Score=38.50 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=46.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.-+|+|+-+...... .-+.++|.. .|+.+.+-+.... + .+.+....+|.+|.-||-+
T Consensus 12 ~~~~~~i~~~~~~~~----~~i~~~l~~-~G~~v~v~~~~~~----~--------------~~~~~l~~~Dglil~GG~~ 68 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDL----GMMEDIFRE-KNWSFDYLDTPKG----E--------------KLERPLEEYSLVVLLGGYM 68 (239)
T ss_dssp CCEEEEECSSTTSSC----THHHHHHHH-TTCEEEEECGGGT----C--------------CCSSCGGGCSEEEECCCSC
T ss_pred eeEEEEEECCCCCCc----hHHHHHHHh-CCCcEEEeCCcCc----c--------------ccccchhcCCEEEECCCCc
Confidence 357888877544332 356777765 5777764321100 0 0011234689999999764
Q ss_pred H------------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 T------------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 T------------lL~aar~~~~~~~PILGIN~G~ 320 (533)
+ ++...+.+...++|||||-+|.
T Consensus 69 ~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~ 103 (239)
T 1o1y_A 69 GAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS 103 (239)
T ss_dssp CTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred cccCCccChhHHHHHHHHHHHHHCCCCEEEEchhH
Confidence 3 3344454434568999999885
No 72
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=50.61 E-value=64 Score=26.57 Aligned_cols=107 Identities=10% Similarity=0.098 Sum_probs=59.2
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhC-CCccEEEE
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH-TKVDLVVT 292 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~DlVIv 292 (533)
...+..+|+||- +++... ..+..+|.+.+++.|..-.+....+.. . . -. ..+|+||+
T Consensus 16 ~~~~~~~ilivd--d~~~~~---~~l~~~L~~~g~~~v~~~~~~~~~~~~----------~------~-~~~~~~dlvi~ 73 (146)
T 4dad_A 16 YFQGMINILVAS--EDASRL---AHLARLVGDAGRYRVTRTVGRAAQIVQ----------R------T-DGLDAFDILMI 73 (146)
T ss_dssp CCGGGCEEEEEC--SCHHHH---HHHHHHHHHHCSCEEEEECCCHHHHTT----------C------H-HHHTTCSEEEE
T ss_pred CcCCCCeEEEEe--CCHHHH---HHHHHHHhhCCCeEEEEeCCHHHHHHH----------H------H-hcCCCCCEEEE
Confidence 344567888885 344443 445556654333777654332222110 0 0 01 45788887
Q ss_pred ----EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCC
Q 009486 293 ----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 293 ----LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~ 343 (533)
-|.|| .+++..+... ..+||+-+. .|-.|||.. +.++++...|..++.+.
T Consensus 74 D~~l~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 74 DGAALDTAELAAIEKLSRLH-PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ECTTCCHHHHHHHHHHHHHC-TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred eCCCCCccHHHHHHHHHHhC-CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 24455 3444444432 467877654 355566554 77888888888888764
No 73
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=50.34 E-value=15 Score=36.47 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=41.7
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCccC---CcchHHHHHHHHHcC
Q 009486 280 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTPF---HSEHYKDYLDSVLRG 342 (533)
Q Consensus 280 ~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~~---~~ed~~~~L~~ll~G 342 (533)
..++...+|++|+=||=||++-++.. ++|++.+..+ ..|++.+. +++++.++|..+++.
T Consensus 294 ~~~ll~~ad~~v~~gG~~t~~Ea~~~----G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 368 (398)
T 4fzr_A 294 LSAIMPACDVVVHHGGHGTTLTCLSE----GVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 368 (398)
T ss_dssp HHHHGGGCSEEEECCCHHHHHHHHHT----TCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHC
T ss_pred HHHHHhhCCEEEecCCHHHHHHHHHh----CCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 44567779999999999999988764 6799986553 35666543 567788888888754
No 74
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=48.81 E-value=38 Score=32.35 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=62.3
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
..++|++++.+.........+.+.+.+.+ .|+++.... +... + ........+..++|.|++ ..|
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~-~~~~---~----------~~~~~~~~l~~~~dai~~-~~D 202 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEAT-ALKS---A----------DVQSATQAIAEKSDVIYA-LID 202 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEE-CSSG---G----------GHHHHHHHHGGGCSEEEE-CSC
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHH-cCCEEEEEe-cCCh---H----------HHHHHHHHHhccCCEEEE-CCc
Confidence 57899999987665555556667777765 577754321 1100 0 001223334457887666 688
Q ss_pred hHHHHHHHhc----CCCCCcEEEEeC---CCCccCccCCcc--hHH----HHHHHHHcCC
Q 009486 297 GTVLWAASIF----KGPVPPIVPFSL---GSLGFMTPFHSE--HYK----DYLDSVLRGP 343 (533)
Q Consensus 297 GTlL~aar~~----~~~~~PILGIN~---G~LGFLt~~~~e--d~~----~~L~~ll~G~ 343 (533)
.+.+.+.+.+ ...++||+|++- +. |-||.+... ++- +.+.++++|+
T Consensus 203 ~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~-~~Lttv~~~~~~~G~~Aa~~l~~~l~g~ 261 (302)
T 2qh8_A 203 NTVASAIEGMIVAANQAKTPVFGAATSYVER-GAIASLGFDYYQIGVQTADYVAAILEGK 261 (302)
T ss_dssp HHHHTTHHHHHHHHHHTTCCEEESSHHHHHT-TCSEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHcCCCEEECCHHHHhC-CcEEEEeCCHHHHHHHHHHHHHHHHCcC
Confidence 8776543211 135799999863 23 566665432 222 3455566774
No 75
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=47.94 E-value=18 Score=37.75 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=47.8
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch-
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG- 297 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG- 297 (533)
.+|+++---.+ ..++++|.+ .|+.+.+-+... +.+++. ..++|.||.-||-|
T Consensus 191 ~~V~viD~G~k-------~ni~r~L~~-~G~~v~vvp~~~-----------------~~e~i~--~~~~DGliLsGGPgd 243 (379)
T 1a9x_B 191 FHVVAYDFGAK-------RNILRMLVD-RGCRLTIVPAQT-----------------SAEDVL--KMNPDGIFLSNGPGD 243 (379)
T ss_dssp EEEEEEESSCC-------HHHHHHHHH-TTEEEEEEETTC-----------------CHHHHH--TTCCSEEEECCCSBC
T ss_pred CEEEEEECCCh-------HHHHHHHHH-CCCEEEEEeccC-----------------CHHHHh--hcCCCEEEEeCCCCC
Confidence 46888765332 358888876 577766543210 011111 23689999999944
Q ss_pred -----HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 -----TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 -----TlL~aar~~~~~~~PILGIN~G~ 320 (533)
..+...+.+....+|||||-+|.
T Consensus 244 p~~~~~~~~~Ir~~~~~~~PILGIClG~ 271 (379)
T 1a9x_B 244 PAPCDYAITAIQKFLETDIPVFGICLGH 271 (379)
T ss_dssp STTCHHHHHHHHHHTTSCCCEEEETHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEECchH
Confidence 34566677766789999999986
No 76
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=47.59 E-value=13 Score=36.60 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 284 HTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 284 ~~~~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
...+|.||.-||=|. .+.+.+.+....+|||||-+|.
T Consensus 65 ~~~~dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 106 (273)
T 2w7t_A 65 LLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGM 106 (273)
T ss_dssp HHTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred HhhCCEEEecCCCCCcCchhHHHHHHHHHHCCCcEEEECcCH
Confidence 346899999998653 3344454444568999999885
No 77
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=47.40 E-value=7.9 Score=36.41 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC-c
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG-D 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG-D 296 (533)
+.+|+++-..+.- ...+.++|.+. |..+.+-+... ..+++ .++|.+|.-|| .
T Consensus 13 ~~~i~~id~~~~~-----~~~~~~~l~~~-G~~~~vv~~~~--------------------~~~~l-~~~DglIl~GG~p 65 (212)
T 2a9v_A 13 MLKIYVVDNGGQW-----THREWRVLREL-GVDTKIVPNDI--------------------DSSEL-DGLDGLVLSGGAP 65 (212)
T ss_dssp CCBEEEEEESCCT-----TCHHHHHHHHT-TCBCCEEETTS--------------------CGGGG-TTCSEEEEEEECS
T ss_pred cceEEEEeCCCcc-----HHHHHHHHHHC-CCEEEEEeCCC--------------------CHHHH-hCCCEEEECCCCC
Confidence 3468888776543 34577777653 44433221100 01122 34899999999 6
Q ss_pred hHHHH------HHHhcCCCCCcEEEEeCCC
Q 009486 297 GTVLW------AASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTlL~------aar~~~~~~~PILGIN~G~ 320 (533)
|++-. ..+.+...++|||||-+|.
T Consensus 66 ~~~~~~~~~~~l~~~~~~~~~PiLGIC~G~ 95 (212)
T 2a9v_A 66 NIDEELDKLGSVGKYIDDHNYPILGICVGA 95 (212)
T ss_dssp CGGGTGGGHHHHHHHHHHCCSCEEEETHHH
T ss_pred CCCcccccchhHHHHHHhCCCCEEEEChHH
Confidence 66532 1222234578999999885
No 78
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=46.59 E-value=18 Score=33.23 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCccEEEEEe-Cch-H---------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLG-GDG-T---------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLG-GDG-T---------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.+|.-| ||- + ++...+.+...+.||+||-.|.
T Consensus 39 ~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~ 85 (200)
T 1ka9_H 39 EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGM 85 (200)
T ss_dssp SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHH
T ss_pred ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHH
Confidence 3689888866 552 2 3445554444578999998884
No 79
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=45.74 E-value=45 Score=28.36 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=58.7
Q ss_pred cCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 215 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
..++++|+++.-..-....-++.++-+.+.+ .|+++-++..-..+ +.....++|+||+--
T Consensus 18 ~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~-~gi~~~V~~~~~~~-------------------~~~~~~~~DlIist~ 77 (113)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE-------------------IETYMDGVHLICTTA 77 (113)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHH-TTCCEEEEEECTTT-------------------TTTSTTSCSEEEESS
T ss_pred cccccEEEEECCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEecHHH-------------------HhhccCCCCEEEECC
Confidence 3457899999988877777778899999976 57765554321110 111234689877622
Q ss_pred CchHHHHHHHhcCCC-CCcEEEEeCCCCccCccCCcchHHHHHHHHHc
Q 009486 295 GDGTVLWAASIFKGP-VPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLR 341 (533)
Q Consensus 295 GDGTlL~aar~~~~~-~~PILGIN~G~LGFLt~~~~ed~~~~L~~ll~ 341 (533)
+ | -... ++|++-+ ..|++..+.+.+.+.+..+++
T Consensus 78 -~---l-----~~~~~~ipvi~v----~~~l~~~d~~~i~~~i~~~l~ 112 (113)
T 1tvm_A 78 -R---V-----DRSFGDIPLVHG----MPFVSGVGIEALQNKILTILQ 112 (113)
T ss_dssp -C---C-----CCCSTTCCEECC----HHHHHSSSHHHHHHHHHHHHH
T ss_pred -c---c-----ccccCCCCEEEE----eeccccCCHHHHHHHHHHHHh
Confidence 1 0 0223 5687543 278888888888777766654
No 80
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=45.20 E-value=90 Score=28.22 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=62.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-chhHHhhhcCCcccccccccchHHHhhhCCCccEEEE---
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-RVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT--- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~-~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv--- 292 (533)
.+.+|+||- +++... ..+..+|....++.+.... .....+.. .+ ....+|+||+
T Consensus 6 ~~~~Ilivd--D~~~~~---~~l~~~L~~~~~~~v~~~~~~~~~~~~~------~~-----------~~~~~dlvllD~~ 63 (225)
T 3klo_A 6 NKLNVRMLS--DVCMQS---RLLKEALESKLPLALEITPFSELWLEEN------KP-----------ESRSIQMLVIDYS 63 (225)
T ss_dssp SSEEEEEES--CCSHHH---HHHHHHHHHHSSEEEEEECGGGHHHHTT------CS-----------GGGGCCEEEEEGG
T ss_pred CceEEEEEc--CcHHHH---HHHHHHHhhCCCceEEEEeCCcHHHHHH------Hh-----------hccCCCEEEEeCC
Confidence 355788874 445444 4455555534678875532 11111110 00 0134788887
Q ss_pred -EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCce
Q 009486 293 -LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 293 -LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ 345 (533)
-|+|| .+++..+......+||+-+. .|--|||.. ++++++...|..++.|...
T Consensus 64 mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 64 RISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp GCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEe
Confidence 36777 45566554113467887654 456677664 8889999999999998643
No 81
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=44.97 E-value=23 Score=34.88 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=44.1
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------------CCCccCcc-----CCcchHHHHHHHHHcCC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP-----FHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------------G~LGFLt~-----~~~ed~~~~L~~ll~G~ 343 (533)
++...+|++|+=||=||++-++.. ++|++.+.. +..|++.+ .+++.+.+++..+++..
T Consensus 282 ~ll~~ad~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~ 357 (391)
T 3tsa_A 282 LFLRTCELVICAGGSGTAFTATRL----GIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDT 357 (391)
T ss_dssp GTGGGCSEEEECCCHHHHHHHHHT----TCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCT
T ss_pred HHHhhCCEEEeCCCHHHHHHHHHh----CCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCH
Confidence 455889999999999999988763 679988654 23666654 46778888898888653
No 82
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=44.73 E-value=1.1e+02 Score=29.53 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=49.9
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|+||+.+++......+..+.+.+++ .|+++..+. ... ....+. ..+..+ ..++|.|++.+-
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~-~~~----~~~d~~--------~~~~~l~~~~~d~v~~~~~ 213 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTE-LGGQVKRVF-FRS----GDQDFS--------AQLSVAMSFNPDAIYITGY 213 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEE-ECT----TCCCCH--------HHHHHHHHTCCSEEEECSC
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHH-CCCEEEEEE-eCC----CCccHH--------HHHHHHHhcCCCEEEEccc
Confidence 34799999876666666777788888876 577765432 211 111111 111111 356899888777
Q ss_pred chHH---HHHHHhcCCCCCcEEEE
Q 009486 296 DGTV---LWAASIFKGPVPPIVPF 316 (533)
Q Consensus 296 DGTl---L~aar~~~~~~~PILGI 316 (533)
|... +++++.. +..+|++|.
T Consensus 214 ~~~a~~~~~~~~~~-g~~~~~~~~ 236 (366)
T 3td9_A 214 YPEIALISRQARQL-GFTGYILAG 236 (366)
T ss_dssp HHHHHHHHHHHHHT-TCCSEEEEC
T ss_pred hhHHHHHHHHHHHc-CCCceEEee
Confidence 6554 4444444 456788764
No 83
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=44.67 E-value=13 Score=38.09 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=27.9
Q ss_pred CccEEEEEeCchHHHHHHHhcCC-CCCcEEEEeC
Q 009486 286 KVDLVVTLGGDGTVLWAASIFKG-PVPPIVPFSL 318 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL~aar~~~~-~~~PILGIN~ 318 (533)
++|+||.||| |+++-+++.+.- ..+|++.|.+
T Consensus 94 ~~d~IIavGG-Gsv~D~aK~iA~~~~~p~i~IPT 126 (376)
T 1kq3_A 94 ETDVVVGIGG-GKTLDTAKAVAYKLKKPVVIVPT 126 (376)
T ss_dssp TCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecC
Confidence 7899999999 999999987763 4789999887
No 84
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=44.57 E-value=1.2e+02 Score=24.45 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=56.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCC-eEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE---
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL--- 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~g-i~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL--- 293 (533)
+.+|+||- +++.. ...+..+|.+ .| ++|..-.+..+.+. .+ ....+|+||+=
T Consensus 14 ~~~ilivd--d~~~~---~~~l~~~L~~-~g~~~v~~~~~~~~a~~-------~l-----------~~~~~dlvi~D~~l 69 (135)
T 3snk_A 14 RKQVALFS--SDPNF---KRDVATRLDA-LAIYDVRVSETDDFLKG-------PP-----------ADTRPGIVILDLGG 69 (135)
T ss_dssp CEEEEEEC--SCHHH---HHHHHHHHHH-TSSEEEEEECGGGGGGC-------CC-----------TTCCCSEEEEEEET
T ss_pred CcEEEEEc--CCHHH---HHHHHHHHhh-cCCeEEEEeccHHHHHH-------HH-----------hccCCCEEEEeCCC
Confidence 45788875 34443 3455566654 46 77764433222110 00 02357888772
Q ss_pred -eCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcC
Q 009486 294 -GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 294 -GGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
|.|| .+++..+... ..+||+-+. .|-.+||.. ++++++...|..++.|
T Consensus 70 ~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 70 GDLLGKPGIVEARALW-ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp TGGGGSTTHHHHHGGG-TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCchHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 4566 3566666544 367887654 366677654 7777888878777655
No 85
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=44.47 E-value=56 Score=31.58 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=49.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|++|. .+..........+.+.|.+ .|+++..+..... ....+. ..+..+ ..++|.|++.+.
T Consensus 150 g~~~ia~i~-~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~----~~~d~~--------~~~~~l~~~~~dai~~~~~ 215 (375)
T 4evq_A 150 GLKKAVTVT-WKYAAGEEMVSGFKKSFTA-GKGEVVKDITIAF----PDVEFQ--------SALAEIASLKPDCVYAFFS 215 (375)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEEEEEEECT----TCCCCH--------HHHHHHHHHCCSEEEEECC
T ss_pred CCcEEEEEe-cCchHHHHHHHHHHHHHHH-cCCeEEEEEecCC----CCccHH--------HHHHHHHhcCCCEEEEecC
Confidence 457999998 4556666677788888876 5777643322111 001111 111111 236899999888
Q ss_pred chHHHHHHHhcC--CCCCcEEEE
Q 009486 296 DGTVLWAASIFK--GPVPPIVPF 316 (533)
Q Consensus 296 DGTlL~aar~~~--~~~~PILGI 316 (533)
|...+.+.+.+. +..+|++|.
T Consensus 216 ~~~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 216 GGGALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp THHHHHHHHHHHHTTCCCCEEEE
T ss_pred cchHHHHHHHHHHcCCCceEEec
Confidence 876544444332 456899985
No 86
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=44.44 E-value=11 Score=38.88 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=28.3
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-CCCCcEEEEeC
Q 009486 285 TKVDLVVTLGGDGTVLWAASIFK-GPVPPIVPFSL 318 (533)
Q Consensus 285 ~~~DlVIvLGGDGTlL~aar~~~-~~~~PILGIN~ 318 (533)
.++|+||.+|| |+++-+++.+. ...+|++-|.+
T Consensus 87 ~~~D~IIavGG-Gs~iD~aK~iA~~~~~P~i~IPT 120 (364)
T 3iv7_A 87 NEIDLLVCVGG-GSTIGLAKAIAMTTALPIVAIPT 120 (364)
T ss_dssp TTCCEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHhccCCCEEEEcC
Confidence 57899999999 99999998765 35789999887
No 87
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=43.57 E-value=57 Score=32.26 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=40.9
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++...+|++|+-||=||++-++.. ++|++.+... ..|.+.+ ++++++.++|..+++.
T Consensus 309 ~ll~~ad~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 381 (415)
T 3rsc_A 309 KVLEQATVCVTHGGMGTLMEALYW----GRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD 381 (415)
T ss_dssp HHHHHEEEEEESCCHHHHHHHHHT----TCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTC
T ss_pred HHHhhCCEEEECCcHHHHHHHHHh----CCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcC
Confidence 455679999999999999988753 6788886431 2444332 3667788888888764
No 88
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=43.00 E-value=11 Score=35.33 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
|++|+|+.-+.-+.. + +...++.|.+..++++.+-..... +.. ..... + ..+..+.+...++|+||+-||.|
T Consensus 3 m~kV~ill~~g~~~~-E-~~~~~~~l~~~~~~~v~~vs~~~~-V~~-~~G~~-v---~~d~~l~~~~~~~D~livpGG~~ 74 (206)
T 3f5d_A 3 LKKALFLILDQYADW-E-GVYLASALNQREDWSVHTVSLDPI-VSS-IGGFK-T---SVDYIIGLEPANFNLLVMIGGDS 74 (206)
T ss_dssp CEEEEEECCSSBCTT-T-SHHHHHHHHTSTTEEEEEEESSSE-EEB-TTSCE-E---ECSEETTSSCSCCSEEEECCBSC
T ss_pred ccEEEEEEcCCCcHH-H-HHHHHHHHhccCCeEEEEEECCCC-EEe-cCCcE-E---ecCcChhhCCcCCCEEEEcCCCC
Confidence 678999887654432 2 224556665544777654221111 111 11111 1 11112233334789999999954
Q ss_pred ------HHHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 ------TVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 ------TlL~aar~~~~~~~PILGIN~G~ 320 (533)
.++...+.+.....||.+|-.|.
T Consensus 75 ~~~~~~~l~~~l~~~~~~gk~iaaiC~G~ 103 (206)
T 3f5d_A 75 WSNDNKKLLHFVKTAFQKNIPIAAICGAV 103 (206)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred hhhcCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 57777877777788999998886
No 89
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=42.50 E-value=11 Score=37.81 Aligned_cols=83 Identities=18% Similarity=0.152 Sum_probs=46.1
Q ss_pred EEEEEEcCCChhHH------HHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 009486 220 TVVILTKPNSNSVQ------ILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 293 (533)
Q Consensus 220 ~VlIV~K~~~~~~~------~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL 293 (533)
.|||.......... -+...++++|.+. |..+.+-+... +...+..+...+|.||.-
T Consensus 32 ~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~~~~vv~~~~-----------------~~~~i~~~l~~~dglil~ 93 (315)
T 1l9x_A 32 IIGILMQKCRNKVMKNYGRYYIAASYVKYLESA-GARVVPVRLDL-----------------TEKDYEILFKSINGILFP 93 (315)
T ss_dssp EEEEECEECCSHHHHTTCSEEEEHHHHHHHHHT-TCEEEEECSSC-----------------CHHHHHHHHHHSSEEEEC
T ss_pred EEEEECCcccccccccCcceehHHHHHHHHHHC-CCEEEEEecCC-----------------CHHHHHHHHhcCCEEEEe
Confidence 69998764432200 1223577888764 55554422110 011222334468999999
Q ss_pred eCchH------------HHHHHHhcCCC--CCcEEEEeCCC
Q 009486 294 GGDGT------------VLWAASIFKGP--VPPIVPFSLGS 320 (533)
Q Consensus 294 GGDGT------------lL~aar~~~~~--~~PILGIN~G~ 320 (533)
||-|. ++..++.+... .+|||||-+|.
T Consensus 94 GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 94 GGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred CCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 99543 45555544212 58999999885
No 90
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.97 E-value=1.5e+02 Score=27.41 Aligned_cols=110 Identities=6% Similarity=-0.041 Sum_probs=64.2
Q ss_pred CCCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEE
Q 009486 216 SPPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTL 293 (533)
Q Consensus 216 ~~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvL 293 (533)
.+.++|||+.. ..++-...+...+.+.+.+ .|+.+.+-..-..... + ..-+. -...++|-||+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~-~------------~~~~~~l~~~~vdgiIi~ 70 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RGYIGVLFDANADIER-E------------KTLLRAIGSRGFDGLILQ 70 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TTCEEEEEECTTCHHH-H------------HHHHHHHHTTTCSEEEEE
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHH-H------------HHHHHHHHhCCCCEEEEe
Confidence 44578999875 4566677777778888865 5777766332110000 0 00011 124679999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEeCCCCcc-CccCCcchH---HHHHHHHHc
Q 009486 294 GGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 341 (533)
Q Consensus 294 GGDGTlL~aar~~~~~~~PILGIN~G~LGF-Lt~~~~ed~---~~~L~~ll~ 341 (533)
+.+. -.....+...++|++-|+...-+. +.-+..++. ..+.+.+++
T Consensus 71 ~~~~--~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 120 (276)
T 3jy6_A 71 SFSN--PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQ 120 (276)
T ss_dssp SSCC--HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHT
T ss_pred cCCc--HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 9887 444555556789999988643221 223444443 345556665
No 91
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=41.61 E-value=1.4e+02 Score=24.07 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=59.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE----
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL---- 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL---- 293 (533)
+.+|+||-. ++.. ...+...|.+ .++.|..-.+....+. .+. ...+|+||+=
T Consensus 3 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlvi~d~~~~ 58 (140)
T 2qr3_A 3 LGTIIIVDD--NKGV---LTAVQLLLKN-HFSKVITLSSPVSLST----------------VLR--EENPEVVLLDMNFT 58 (140)
T ss_dssp CCEEEEECS--CHHH---HHHHHHHHTT-TSSEEEEECCHHHHHH----------------HHH--HSCEEEEEEETTTT
T ss_pred CceEEEEeC--CHHH---HHHHHHHHHh-CCcEEEEeCCHHHHHH----------------HHH--cCCCCEEEEeCCcC
Confidence 467888753 3333 3455566654 4777664333222110 011 1347888872
Q ss_pred -----eCchH-HHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCc
Q 009486 294 -----GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 294 -----GGDGT-lL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y 344 (533)
+.||- +++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.+..
T Consensus 59 ~~~~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 59 SGINNGNEGLFWLHEIKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp C-----CCHHHHHHHHHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCCCCCccHHHHHHHHHhh-CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 45553 45555543 3467887764 477787654 788889999999988753
No 92
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=41.48 E-value=18 Score=36.68 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=43.2
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++...+|++|+=||=||++.++.. ++|++.+..+ ..|++.+ ++++++.++|..+++.
T Consensus 331 ~ll~~ad~~V~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 403 (441)
T 2yjn_A 331 ALLPTCAATVHHGGPGSWHTAAIH----GVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDD 403 (441)
T ss_dssp HHGGGCSEEEECCCHHHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCCHHHHHHHHHh----CCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcC
Confidence 456889999999999999998864 6799888652 3555544 4677888888888764
No 93
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=41.22 E-value=25 Score=34.23 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc-
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD- 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD- 296 (533)
+++|+|+.-++-.. .++ .-.++.|....+++|.+-......+.. ..... +. .+..+.+....+|+||+-||.
T Consensus 23 ~~~I~ill~~gf~~-~e~-~~p~dvl~~~~~~~v~~vs~~~~~V~~-~~G~~-i~---~d~~l~~~~~~yD~liVPGG~~ 95 (253)
T 3ewn_A 23 DEQIAMLVYPGMTV-MDL-VGPHCMFGSLMGAKIYIVAKSLDPVTS-DAGLA-IV---PTATFGTCPRDLTVLFAPGGTD 95 (253)
T ss_dssp CCEEEEECCTTBCH-HHH-HHHHHHHTTSTTCEEEEEESSSSCEEC-TTSCE-EC---CSEETTTSCSSCSEEEECCBSH
T ss_pred CeEEEEEeCCCCcH-HHH-HHHHHHHHhCCCCEEEEEeCCCCeEEc-CCCCE-Ee---CCcCHHHcCCCCCEEEECCCcc
Confidence 47899998765543 232 335566643456776552211111100 00111 11 111222333456999999998
Q ss_pred hH--------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GT--------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GT--------lL~aar~~~~~~~PILGIN~G~ 320 (533)
|+ ++...+.+.....+|.+|-.|.
T Consensus 96 g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~ 127 (253)
T 3ewn_A 96 GTLAAASDAETLAFMADRGARAKYITSVCSGS 127 (253)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred chhhhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 75 4455666667788999998886
No 94
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=40.57 E-value=1.5e+02 Score=28.37 Aligned_cols=112 Identities=7% Similarity=0.088 Sum_probs=59.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
+..+||++....++-...+...+.+.+.++.|+++.+...-... ... ...+.. ...++|.||+.+.
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~-~~~------------~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDN-SKQ------------AEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 34678988755455445566666677754227777664211000 000 000111 2357999999998
Q ss_pred chHH-HHHHHhcCCCCCcEEEEeCCCCc--cCccCCcchHH---HHHHHHHc
Q 009486 296 DGTV-LWAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 296 DGTl-L~aar~~~~~~~PILGIN~G~LG--FLt~~~~ed~~---~~L~~ll~ 341 (533)
+.+- -.....+...++|++-++...-+ .+.-+..++.. .+.+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 123 (325)
T 2x7x_A 72 EAAPMTPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIAS 123 (325)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHH
Confidence 8653 23344444457899999864322 23334445543 34555555
No 95
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=40.48 E-value=1.5e+02 Score=24.11 Aligned_cols=102 Identities=9% Similarity=0.179 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----E
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----L 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv----L 293 (533)
+.+|+||- +++... ..+..+|.+ .+..|..-.+....+. .+......+|+||+ -
T Consensus 3 ~~~ilivd--d~~~~~---~~l~~~l~~-~g~~v~~~~~~~~a~~----------------~~~~~~~~~dlvi~d~~l~ 60 (143)
T 3jte_A 3 LAKILVID--DESTIL---QNIKFLLEI-DGNEVLTASSSTEGLR----------------IFTENCNSIDVVITDMKMP 60 (143)
T ss_dssp CCEEEEEC--SCHHHH---HHHHHHHHH-TTCEEEEESSHHHHHH----------------HHHHTTTTCCEEEEESCCS
T ss_pred CCEEEEEc--CCHHHH---HHHHHHHHh-CCceEEEeCCHHHHHH----------------HHHhCCCCCCEEEEeCCCC
Confidence 45788875 344443 445555654 4666664333222110 01111246888887 2
Q ss_pred eCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcC
Q 009486 294 GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 294 GGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
|+|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++++
T Consensus 61 ~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 61 KLSGMDILREIKKI-TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp SSCHHHHHHHHHHH-CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 5566 355555554 3467887654 466777654 7888888888888765
No 96
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=40.18 E-value=1.4e+02 Score=27.59 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLG 294 (533)
+.++|||+.. ..++-...+...+.+.+.+ .|+++.+-..-...- .. ...+. -...++|.||+.+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdgiI~~~ 72 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NKYEALVATSQNSRI-SE------------REQILEFVHLKVDAIFITT 72 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECSSCHH-HH------------HHHHHHHHHTTCSEEEEEC
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCCCHH-HH------------HHHHHHHHHcCCCEEEEec
Confidence 3467898875 4566667777778788866 577776632110000 00 00011 1235799999999
Q ss_pred CchHHH-HHHHhcCCCCCcEEEEeCCCCc--cCccCCcchHH---HHHHHHHc
Q 009486 295 GDGTVL-WAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 295 GDGTlL-~aar~~~~~~~PILGIN~G~LG--FLt~~~~ed~~---~~L~~ll~ 341 (533)
.|...+ ...+.+...++|++-++...-+ .+.-+..++.. .+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 73 LDDVYIGSAIEEAKKAGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp SCTTTTHHHHHHHHHTTCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHH
Confidence 887653 3445555568999999875433 23334455543 34444544
No 97
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=39.54 E-value=1.5e+02 Score=24.01 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=59.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE----
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL---- 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL---- 293 (533)
+.+|+||- +++.. ...+..+|.+ .|++|..-.+..+.+. .+ ....+|+||+=
T Consensus 6 ~~~ilivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~-------~l-----------~~~~~dlvi~D~~l~ 61 (136)
T 3kto_A 6 HPIIYLVD--HQKDA---RAALSKLLSP-LDVTIQCFASAESFMR-------QQ-----------ISDDAIGMIIEAHLE 61 (136)
T ss_dssp -CEEEEEC--SCHHH---HHHHHHHHTT-SSSEEEEESSHHHHTT-------SC-----------CCTTEEEEEEETTGG
T ss_pred CCeEEEEc--CCHHH---HHHHHHHHHH-CCcEEEEeCCHHHHHH-------HH-----------hccCCCEEEEeCcCC
Confidence 45788885 34433 3445566654 5777764433222211 00 01347888872
Q ss_pred e--Cch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHcCCc
Q 009486 294 G--GDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 294 G--GDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~G~y 344 (533)
| .|| .+++..+.. ...+||+-+. .|-.+||. +++++++...|.++..|..
T Consensus 62 ~~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 62 DKKDSGIELLETLVKR-GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp GBTTHHHHHHHHHHHT-TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHhC-CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 3 455 355555554 3567887664 46677766 4888889889988887644
No 98
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=39.47 E-value=1.7e+02 Score=27.10 Aligned_cols=110 Identities=7% Similarity=0.067 Sum_probs=62.6
Q ss_pred CCCEEEEEEcC------CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccE
Q 009486 217 PPQTVVILTKP------NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDL 289 (533)
Q Consensus 217 ~pk~VlIV~K~------~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~Dl 289 (533)
+.++|||+... .++-...+...+.+.+.+ .|+.+.+-..-...-. . ..-+. -...++|-
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~-~------------~~~~~~~~~~~vdg 72 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EGYALYMSTGETEEEI-F------------NGVVKMVQGRQIGG 72 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TTCEEEECCCCSHHHH-H------------HHHHHHHHTTCCCE
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCCHHH-H------------HHHHHHHHcCCCCE
Confidence 45689998765 566677777788888866 5777776432111000 0 00011 12467999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCcc--CccCCcchHH---HHHHHHHc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF--MTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGF--Lt~~~~ed~~---~~L~~ll~ 341 (533)
||+++.+.+- .....+...++|++-++...-+. +.-+..++.. .+.+.+++
T Consensus 73 iIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 128 (292)
T 3k4h_A 73 IILLYSREND-RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS 128 (292)
T ss_dssp EEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 9999887542 23333434578999988643222 3334445433 45555554
No 99
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=38.87 E-value=38 Score=27.35 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhh---hHhHHHHHHHHHHHHH
Q 009486 63 ALRTVAKALRRAAEG---KAAAQAEAAEWKRRFE 93 (533)
Q Consensus 63 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 93 (533)
-|--|.|+.|.++-- .-+-+.|--.|.|||-
T Consensus 33 I~~MVEKTrRsltvLrRcQe~dReeln~W~Rr~~ 66 (72)
T 1wq6_A 33 IMDMVEKTRRSLTVLRRCQEADREELNYWIRRYS 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 456788998888865 3344678889999994
No 100
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=38.79 E-value=1.6e+02 Score=24.02 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh--CCCccEEEE--
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDLVVT-- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~--~~~~DlVIv-- 292 (533)
...+|+||- +++.. ...+..+|.+ .|+.|..-.+..+.+ ..+ ...+|+||+
T Consensus 4 ~~~~ilivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~-------------------~~l~~~~~~dlvi~D~ 58 (140)
T 3h5i_A 4 KDKKILIVE--DSKFQ---AKTIANILNK-YGYTVEIALTGEAAV-------------------EKVSGGWYPDLILMDI 58 (140)
T ss_dssp --CEEEEEC--SCHHH---HHHHHHHHHH-TTCEEEEESSHHHHH-------------------HHHHTTCCCSEEEEES
T ss_pred CCcEEEEEe--CCHHH---HHHHHHHHHH-cCCEEEEecChHHHH-------------------HHHhcCCCCCEEEEec
Confidence 356788885 34433 3455566654 467766433222211 111 146898887
Q ss_pred -E--eCch-HHHHHHHhcCCCCCcEEEEeC-------------CCCccCc-cCCcchHHHHHHHHHc
Q 009486 293 -L--GGDG-TVLWAASIFKGPVPPIVPFSL-------------GSLGFMT-PFHSEHYKDYLDSVLR 341 (533)
Q Consensus 293 -L--GGDG-TlL~aar~~~~~~~PILGIN~-------------G~LGFLt-~~~~ed~~~~L~~ll~ 341 (533)
+ |.|| .+++..+.. ..+||+-+.. |-.|||. +++++++...|..+++
T Consensus 59 ~l~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 59 ELGEGMDGVQTALAIQQI--SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp SCSSSCCHHHHHHHHHHH--CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3 4677 456666654 4678877653 5556655 4788888888887764
No 101
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=38.22 E-value=1.5e+02 Score=23.72 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=36.8
Q ss_pred CccEEEEE-----eCchH-HHHHHHhcCCCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHcC
Q 009486 286 KVDLVVTL-----GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 286 ~~DlVIvL-----GGDGT-lL~aar~~~~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~G 342 (533)
.+|+||+= |.||. +++..+.. ..+||+-+. .|-.+||. +++++++...|..++++
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAG--CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHH--SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 47888873 35663 56666554 567887664 35567765 47788888888887765
No 102
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=37.81 E-value=25 Score=36.31 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=26.4
Q ss_pred CccEEEEEeCchHHHHHHHhcC-------------------CCCCcEEEEeC
Q 009486 286 KVDLVVTLGGDGTVLWAASIFK-------------------GPVPPIVPFSL 318 (533)
Q Consensus 286 ~~DlVIvLGGDGTlL~aar~~~-------------------~~~~PILGIN~ 318 (533)
++|+||.||| |.++-+++.+. ...+|++.|.+
T Consensus 109 ~~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 109 LPVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp CCSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 4999999999 99999988653 12689999987
No 103
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.73 E-value=1.1e+02 Score=29.02 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=63.0
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 009486 218 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGG 295 (533)
.++||++.. ..++-...+...+.+.+.+ .|+.+.+-..-... ... ...+. .+..++|.||+.+.
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LGAKVFVQSANGNE-ETQ------------MSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TSCEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEECCCCCH-HHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 467888876 3566667777888888876 57777764321100 000 00011 12367999999999
Q ss_pred chHH-HHHHHhcCCCCCcEEEEeCCCC--ccCccCCcchHH---HHHHHHH
Q 009486 296 DGTV-LWAASIFKGPVPPIVPFSLGSL--GFMTPFHSEHYK---DYLDSVL 340 (533)
Q Consensus 296 DGTl-L~aar~~~~~~~PILGIN~G~L--GFLt~~~~ed~~---~~L~~ll 340 (533)
|.+- -...+.+...++|++-++...- ++..-+..++.. .+.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 68 NGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp STTSCHHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHH
Confidence 8764 2344455566899999987533 232234445543 4555555
No 104
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=36.39 E-value=1.7e+02 Score=23.69 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=33.3
Q ss_pred CccEEEE---E-eCch-HHHHHHHhcCCCCCcEEEEe-----------CCCCccCcc-CCcchHHHHHHHHHc
Q 009486 286 KVDLVVT---L-GGDG-TVLWAASIFKGPVPPIVPFS-----------LGSLGFMTP-FHSEHYKDYLDSVLR 341 (533)
Q Consensus 286 ~~DlVIv---L-GGDG-TlL~aar~~~~~~~PILGIN-----------~G~LGFLt~-~~~ed~~~~L~~ll~ 341 (533)
.+|+||+ + |.|| .+++..+.. ...+||+-+. .|-.+||.. ++++++...|..++.
T Consensus 55 ~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 55 KVDAIFLDINIPSLDGVLLAQNISQF-AHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHTTS-TTCCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcc-CCCceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4788876 2 4466 345555543 2456676553 356677654 677778777777664
No 105
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=35.88 E-value=76 Score=27.67 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=42.3
Q ss_pred hHHHhhhCCCccEEEE---EeCch-HHHHHHHhcCCCCCcEEEEeC---------CCCccCccCCcchHHHHHHHHHcCC
Q 009486 277 EKEILLLHTKVDLVVT---LGGDG-TVLWAASIFKGPVPPIVPFSL---------GSLGFMTPFHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 277 ~~~~~~~~~~~DlVIv---LGGDG-TlL~aar~~~~~~~PILGIN~---------G~LGFLt~~~~ed~~~~L~~ll~G~ 343 (533)
..++..+...+|++|. ..|=| +++-+.. .++||+.-+. |..||+.+-+++++.++|..+++..
T Consensus 88 ~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama----~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 88 EEELIDLYSRCKGLLCTAKDEDFGLTPIEAMA----SGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp HHHHHHHHHHCSEEEECCSSCCSCHHHHHHHH----TTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCEEEeCCCcCCCChHHHHHHH----cCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCH
Confidence 3445667778898887 22334 4444443 4679998775 4567776666788889999888543
No 106
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=35.65 E-value=31 Score=34.54 Aligned_cols=57 Identities=25% Similarity=0.273 Sum_probs=42.6
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++...+|++|+-||=||++-++.. ++|++.+... ..|...+ ++++++.++|..++++
T Consensus 317 ~~l~~~d~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 389 (424)
T 2iya_A 317 DILTKASAFITHAGMGSTMEALSN----AVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389 (424)
T ss_dssp HHHTTCSEEEECCCHHHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCchhHHHHHHHc----CCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcC
Confidence 456789999999999999998864 6799988642 2454433 4667788888888764
No 107
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=35.47 E-value=13 Score=25.31 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 009486 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (533)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (533)
++++.|++.+|..-.++|+++||+
T Consensus 1 HadGtFTsdysk~l~~~aak~fv~ 24 (29)
T 2g49_C 1 HSQGTFTSDYSKYLDSRRAQDFVQ 24 (29)
T ss_pred CCCccchHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999985
No 108
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=35.22 E-value=1.9e+02 Score=27.38 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCe------EEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccE
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKL------NIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDL 289 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi------~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~Dl 289 (533)
+.++|||+.....|-..++.+-+.+.|.++ |. .+.+...-. ....+ ..-+.. ...++|.
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~-Gy~~g~~v~l~~~~~~~-~~~~~------------~~~~~~l~~~~vDg 72 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDGLKAK-GYEEGKNLEFDYKTAQG-NPAIA------------VQIARQFVGENPDV 72 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHT-TCCBTTTEEEEEEECTT-CHHHH------------HHHHHHHHHTCCSE
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHHHHHc-CCCCCCceEEEEecCCC-CHHHH------------HHHHHHHHhCCCCE
Confidence 457899998778888888888888888764 44 443321100 00000 000111 2357999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEe
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFS 317 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN 317 (533)
||++|.+.+.. .... ..++||+-++
T Consensus 73 II~~~~~~~~~-~~~~--~~~iPvV~~~ 97 (302)
T 2qh8_A 73 LVGIATPTAQA-LVSA--TKTIPIVFTA 97 (302)
T ss_dssp EEEESHHHHHH-HHHH--CSSSCEEEEE
T ss_pred EEECChHHHHH-HHhc--CCCcCEEEEe
Confidence 99987654432 2222 4578987665
No 109
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=35.08 E-value=65 Score=32.60 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.+++++++....-. ..-+.+++++|+++ +.+. +...+. . .+..--....++..++|++|++||
T Consensus 155 ~~~kv~~vsQTT~s--~~~~~~iv~~L~~r~p~~~--~~~tIC----------~--AT~~RQ~av~~la~~~D~miVVGg 218 (297)
T 3dnf_A 155 KHERVGIVAQTTQN--EEFFKEVVGEIALWVKEVK--VINTIC----------N--ATSLRQESVKKLAPEVDVMIIIGG 218 (297)
T ss_dssp GCSEEEEEECTTCC--HHHHHHHHHHHHHHSSEEE--EECCCC----------S--HHHHHHHHHHHHGGGSSEEEEESC
T ss_pred CCCcEEEEEecCCc--HHHHHHHHHHHHHhCCCCC--CCCCcc----------H--HHHHHHHHHHHHHhhCCEEEEECC
Confidence 46899999987654 45578888888763 3232 111111 1 111112355678889999999999
No 110
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=35.06 E-value=92 Score=29.16 Aligned_cols=104 Identities=10% Similarity=-0.028 Sum_probs=57.5
Q ss_pred CCCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEE
Q 009486 216 SPPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVT 292 (533)
Q Consensus 216 ~~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIv 292 (533)
++-++|+++.. ..++-...+...+.+.+.+ .|+.+.+ ...-... ... ...+. .+..++|.||+
T Consensus 2 s~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~~------------~~~i~~l~~~~vdgiIi 67 (305)
T 3g1w_A 2 SLNETYMMITFQSGMDYWKRCLKGFEDAAQA-LNVTVEYRGAAQYDI-QEQ------------ITVLEQAIAKNPAGIAI 67 (305)
T ss_dssp ---CEEEEEESSTTSTHHHHHHHHHHHHHHH-HTCEEEEEECSSSCH-HHH------------HHHHHHHHHHCCSEEEE
T ss_pred CCCceEEEEEccCCChHHHHHHHHHHHHHHH-cCCEEEEeCCCcCCH-HHH------------HHHHHHHHHhCCCEEEE
Confidence 34567888875 4566666777777778766 5777766 2110000 000 00011 12357999999
Q ss_pred EeCchHH-HHHHHhcCCCCCcEEEEeCCCCc--cCccCCcchHH
Q 009486 293 LGGDGTV-LWAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHYK 333 (533)
Q Consensus 293 LGGDGTl-L~aar~~~~~~~PILGIN~G~LG--FLt~~~~ed~~ 333 (533)
.+.|.+. ....+.+...++|++-++...-+ .+.-+..++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~ 111 (305)
T 3g1w_A 68 SAIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYN 111 (305)
T ss_dssp CCSSTTTTHHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHH
Confidence 9988762 33444444567999999875332 23344455543
No 111
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.05 E-value=1.7e+02 Score=23.31 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=56.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----Ee
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----LG 294 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv----LG 294 (533)
++|+||- +++... ..+..+|.. .|++|..-.+..+.+. .+ ....+|+||+ =|
T Consensus 3 ~~ILivd--d~~~~~---~~l~~~l~~-~g~~v~~~~~~~~al~----------------~l--~~~~~dlvllD~~~p~ 58 (122)
T 3gl9_A 3 KKVLLVD--DSAVLR---KIVSFNLKK-EGYEVIEAENGQIALE----------------KL--SEFTPDLIVLXIMMPV 58 (122)
T ss_dssp CEEEEEC--SCHHHH---HHHHHHHHH-TTCEEEEESSHHHHHH----------------HH--TTBCCSEEEECSCCSS
T ss_pred ceEEEEe--CCHHHH---HHHHHHHHH-CCcEEEEeCCHHHHHH----------------HH--HhcCCCEEEEeccCCC
Confidence 4787774 344443 344455544 5777764333222111 01 1235788887 36
Q ss_pred Cch-HHHHHHHhcC-CCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHc
Q 009486 295 GDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLR 341 (533)
Q Consensus 295 GDG-TlL~aar~~~-~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~ 341 (533)
.|| .+++..+... ...+||+-+. .|-.+||. +++++++...|.++++
T Consensus 59 ~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 59 MDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 677 4555555433 2467887655 46677765 4778888888877664
No 112
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.82 E-value=79 Score=27.46 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhHh-------HHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 009486 64 LRTVAKALRRAAEGKAA-------AQAEAAEWKRRFELERARNLRLENKEQ 107 (533)
Q Consensus 64 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (533)
++..-+.|..+.--||. +|.++.++|.|||-|..+....|+...
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~ 72 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444443 678899999999999987777766544
No 113
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=34.49 E-value=27 Score=38.78 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=45.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 009486 219 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 298 (533)
Q Consensus 219 k~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGT 298 (533)
++|+|+=..+. ....|.++|.+ .|..+.+-+... . ....++|.||..||-|.
T Consensus 447 k~IlviD~gds-----f~~~l~~~l~~-~G~~v~Vv~~d~------------------~----~~~~~~DgIIlsGGPg~ 498 (645)
T 3r75_A 447 CRALIVDAEDH-----FTAMIAQQLSS-LGLATEVCGVHD------------------A----VDLARYDVVVMGPGPGD 498 (645)
T ss_dssp CEEEEEESSCT-----HHHHHHHHHHH-TTCEEEEEETTC------------------C----CCGGGCSEEEECCCSSC
T ss_pred CEEEEEECCcc-----HHHHHHHHHHH-CCCEEEEEECCC------------------c----ccccCCCEEEECCCCCC
Confidence 57888866543 24568888876 466655432100 0 01235799999999765
Q ss_pred H-----------HHHHHhcCCCCCcEEEEeCCC
Q 009486 299 V-----------LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 299 l-----------L~aar~~~~~~~PILGIN~G~ 320 (533)
. ....+.+....+|||||-+|.
T Consensus 499 p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~ 531 (645)
T 3r75_A 499 PSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSH 531 (645)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHH
Confidence 3 333444334578999999986
No 114
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=34.43 E-value=1.8e+02 Score=27.14 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLG 294 (533)
+..+|+++.. ..++-...+...+.+.+.+ .|+.+.+...-... ..+ ...+.. ...++|.||+.+
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgii~~~ 84 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ-RGYQLLIACSEDQP-DNE------------MRCIEHLLQRQVDAIIVST 84 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEECC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CCCEEEEEcCCCCH-HHH------------HHHHHHHHHcCCCEEEEeC
Confidence 4568998875 4566666777777777765 57777663211000 000 001111 235799999998
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCCc-cCccCCcchHH---HHHHHHHc
Q 009486 295 GDGTVLWAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PILGIN~G~LG-FLt~~~~ed~~---~~L~~ll~ 341 (533)
.+.+--.....+...++|++-++...-+ -+.-+..++.. .+.+.+++
T Consensus 85 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~ 135 (293)
T 2iks_A 85 SLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRK 135 (293)
T ss_dssp SSCTTCHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHH
Confidence 8754322334555668999998864222 12224444433 45556654
No 115
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=34.37 E-value=34 Score=34.19 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=43.4
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-------------CCCccCcc---CCcchHHHHHHHHHcC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-------------G~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++...+|++|+-||=+|++-++.. ++|++.+.. +..|++.+ ++++++.++|..+++.
T Consensus 295 ~~l~~ad~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 295 AILRQADLFVTHAGAGGSQEGLAT----ATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDD 367 (430)
T ss_dssp HHHTTCSEEEECCCHHHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHC
T ss_pred HHhhccCEEEECCCccHHHHHHHh----CCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcC
Confidence 456789999999998999988763 679998764 23577654 3567888888888864
No 116
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.12 E-value=1.8e+02 Score=23.17 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT---- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv---- 292 (533)
++++|+||- +++.. ...+..+|.+ .|..+..-.+..+.+. .+ ....+|+||+
T Consensus 6 ~~~~ilivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l--~~~~~dlvi~d~~l 61 (130)
T 3eod_A 6 VGKQILIVE--DEQVF---RSLLDSWFSS-LGATTVLAADGVDALE----------------LL--GGFTPDLMICDIAM 61 (130)
T ss_dssp TTCEEEEEC--SCHHH---HHHHHHHHHH-TTCEEEEESCHHHHHH----------------HH--TTCCCSEEEECCC-
T ss_pred CCCeEEEEe--CCHHH---HHHHHHHHHh-CCceEEEeCCHHHHHH----------------HH--hcCCCCEEEEecCC
Confidence 356888885 34433 3445556654 4666655332222110 01 1235788887
Q ss_pred EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-C-CcchHHHHHHHHHcCC
Q 009486 293 LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-F-HSEHYKDYLDSVLRGP 343 (533)
Q Consensus 293 LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~-~~ed~~~~L~~ll~G~ 343 (533)
-|+|| .+++..+.. ...+||+-+. .|-.+||.. + +++++...|..++.++
T Consensus 62 ~~~~g~~~~~~l~~~-~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 62 PRMNGLKLLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ----CHHHHHHHHHT-TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 34555 455666653 3467887654 366677654 6 6788888888888764
No 117
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=34.04 E-value=29 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=25.6
Q ss_pred ccEEEEEeCchHHHHHHHhcC---CCCCcEEEEeC
Q 009486 287 VDLVVTLGGDGTVLWAASIFK---GPVPPIVPFSL 318 (533)
Q Consensus 287 ~DlVIvLGGDGTlL~aar~~~---~~~~PILGIN~ 318 (533)
.|+||.||| |.++-+++.+. ..++|++-|.+
T Consensus 86 ~d~iIavGG-Gsv~D~ak~~A~~~~rgip~i~IPT 119 (343)
T 3clh_A 86 HSLMIALGG-GVISDMVGFASSIYFRGIDFINIPT 119 (343)
T ss_dssp TCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred CceEEEECC-hHHHHHHHHHHHHhccCCCEEEeCC
Confidence 399999999 99999988665 46788888774
No 118
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.47 E-value=1.9e+02 Score=23.32 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT---- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv---- 292 (533)
++.+|+||- +++... ..+..+|.+ .|+.|..-.+..+.+. .+. ...+|+||+
T Consensus 5 ~~~~iLivd--d~~~~~---~~l~~~l~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlvi~d~~l 60 (140)
T 3grc_A 5 PRPRILICE--DDPDIA---RLLNLMLEK-GGFDSDMVHSAAQALE----------------QVA--RRPYAAMTVDLNL 60 (140)
T ss_dssp CCSEEEEEC--SCHHHH---HHHHHHHHH-TTCEEEEECSHHHHHH----------------HHH--HSCCSEEEECSCC
T ss_pred CCCCEEEEc--CCHHHH---HHHHHHHHH-CCCeEEEECCHHHHHH----------------HHH--hCCCCEEEEeCCC
Confidence 356888885 344333 445555654 5677654333222111 011 135788887
Q ss_pred EeCchH-HHHHHHhc-CCCCCcEEEEe--------------CCCCccCc-cCCcchHHHHHHHHHcCCc
Q 009486 293 LGGDGT-VLWAASIF-KGPVPPIVPFS--------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 293 LGGDGT-lL~aar~~-~~~~~PILGIN--------------~G~LGFLt-~~~~ed~~~~L~~ll~G~y 344 (533)
-|.||. +++..+.. ....+||+-+. .|-.+||. +++++++...|..++++..
T Consensus 61 ~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 61 PDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp SSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 255663 45555542 23467887654 25566655 4888899999998887543
No 119
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=33.24 E-value=1.6e+02 Score=28.61 Aligned_cols=119 Identities=11% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-c-hhHHh---hhc---CCcccccccccchHHHhhhCCCcc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-R-VRAEL---LTE---SSYFSFVQTWKDEKEILLLHTKVD 288 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~-~-~a~~l---~~~---~~~~~~i~~~~~~~~~~~~~~~~D 288 (533)
....|+.+.+.....-...+.+.+..|.+...+.+.+-- . ....+ ... .....+... ..++..+...+|
T Consensus 210 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~---~~~~~~~~~~ad 286 (394)
T 2jjm_A 210 SEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGK---QDNVAELLAMSD 286 (394)
T ss_dssp --CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBS---CSCTHHHHHTCS
T ss_pred CCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCc---hhhHHHHHHhCC
Confidence 345788888876555555566666666554455555421 1 11111 111 011112221 123445667889
Q ss_pred EEEEE----eCchHHHHHHHhcCCCCCcEEEEeCC---------CCccCccC-CcchHHHHHHHHHcC
Q 009486 289 LVVTL----GGDGTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 289 lVIvL----GGDGTlL~aar~~~~~~~PILGIN~G---------~LGFLt~~-~~ed~~~~L~~ll~G 342 (533)
++|.- |.=.+++-|.. .+.||+..+.| .-||+.+. +++++.++|..+++.
T Consensus 287 v~v~ps~~e~~~~~~~EAma----~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 287 LMLLLSEKESFGLVLLEAMA----CGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp EEEECCSCCSCCHHHHHHHH----TTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred EEEeccccCCCchHHHHHHh----cCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 88853 22234444443 36799998874 45777663 577788888888764
No 120
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=33.19 E-value=2.9e+02 Score=25.46 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=40.6
Q ss_pred CCccEEEEE----eCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCc
Q 009486 285 TKVDLVVTL----GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 285 ~~~DlVIvL----GGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y 344 (533)
..+|+||+= |+|| .+++..+. ...+||+-+. .|-.|||.. ++++++..+|..++.|..
T Consensus 80 ~~~DlvllD~~lp~~~G~~l~~~lr~--~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 80 DHPDLILLDLGLPDFDGGDVVQRLRK--NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp SCCSEEEEECCSCHHHHHHHHHHHHT--TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHc--CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 357888872 4566 35555554 3467887765 366788765 888899999999988753
No 121
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=33.12 E-value=1.9e+02 Score=27.75 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=68.8
Q ss_pred cCCCCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEcc--chhHHhhh--c--CCcccccccccchHHHhhhCCCc
Q 009486 215 ESPPQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVEP--RVRAELLT--E--SSYFSFVQTWKDEKEILLLHTKV 287 (533)
Q Consensus 215 ~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e-~~gi~V~ve~--~~a~~l~~--~--~~~~~~i~~~~~~~~~~~~~~~~ 287 (533)
......|+.+.+.....-...+.+++..|.+ .+++.+.+-- .....+.. . .....+. .+.+..++..+...+
T Consensus 195 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~~~a 273 (394)
T 3okp_A 195 TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFL-GRLEYQDMINTLAAA 273 (394)
T ss_dssp CTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEE-ESCCHHHHHHHHHHC
T ss_pred CcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEc-CCCCHHHHHHHHHhC
Confidence 3444678888887655545555566666643 2456665521 11111111 0 0111111 222335566777889
Q ss_pred cEEEEE----------eCch-HHHHHHHhcCCCCCcEEEEeCCC--------CccCccC-CcchHHHHHHHHHcC
Q 009486 288 DLVVTL----------GGDG-TVLWAASIFKGPVPPIVPFSLGS--------LGFMTPF-HSEHYKDYLDSVLRG 342 (533)
Q Consensus 288 DlVIvL----------GGDG-TlL~aar~~~~~~~PILGIN~G~--------LGFLt~~-~~ed~~~~L~~ll~G 342 (533)
|++|.. .|=| +++-|.. .+.||+.-+.|. -|++.+. +++++.++|..+++.
T Consensus 274 d~~v~ps~~~~~~~~~e~~~~~~~Ea~a----~G~PvI~~~~~~~~e~i~~~~g~~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 274 DIFAMPARTRGGGLDVEGLGIVYLEAQA----CGVPVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp SEEEECCCCBGGGTBCCSSCHHHHHHHH----TTCCEEECSSTTGGGGCCTTTEEECCTTCHHHHHHHHHHHHTC
T ss_pred CEEEecCccccccccccccCcHHHHHHH----cCCCEEEeCCCChHHHHhcCCceEeCCCCHHHHHHHHHHHHhC
Confidence 999873 2223 4444443 367999877642 5777764 678888899888764
No 122
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=33.06 E-value=52 Score=32.54 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=54.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
++.+|+||..-..-+.......|.+.|.+..+++|-+...... ..+...| . +...++|+|| +--.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~--~~d~~~f------~------~~L~~~D~vV-~~~~ 67 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQ--GKDMSGF------V------LDFSPYQLVV-LDYN 67 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCT--TSCCTTC------C------CCCTTCSEEE-ECCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCcc--ccchhHH------h------hhhhcCCEEE-EeCC
Confidence 5778999998655556677778888887654488877543210 0000011 0 1246799999 5444
Q ss_pred hHHH-----HHHHhcCCCCCcEEEEeCCCCcc
Q 009486 297 GTVL-----WAASIFKGPVPPIVPFSLGSLGF 323 (533)
Q Consensus 297 GTlL-----~aar~~~~~~~PILGIN~G~LGF 323 (533)
|-.| .+...+...+.+++|+..+.-.|
T Consensus 68 ~~~l~~~~~~~l~~yV~~Ggglv~~H~a~~~~ 99 (281)
T 4e5v_A 68 GDSWPEETNRRFLEYVQNGGGVVIYHAADNAF 99 (281)
T ss_dssp SSCCCHHHHHHHHHHHHTTCEEEEEGGGGGSC
T ss_pred CCcCCHHHHHHHHHHHHcCCCEEEEecccccC
Confidence 3333 23333334578999999877555
No 123
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=32.15 E-value=1.3e+02 Score=27.80 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=61.5
Q ss_pred CCCCEEEEEEcC-C--ChhHHHHHHHHHHHHHhcCCeEEEEccch-hHHhhhcCCcccccccccchHHHh-hhCCCccEE
Q 009486 216 SPPQTVVILTKP-N--SNSVQILCAQMVRWLREQKKLNIYVEPRV-RAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLV 290 (533)
Q Consensus 216 ~~pk~VlIV~K~-~--~~~~~~~~~el~~~L~e~~gi~V~ve~~~-a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlV 290 (533)
.+.++||++... . ++-...+..-+.+.+.+ .|+.+.+-... ....... ...+. ....++|.|
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~vdgi 69 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YEIKLEFMAPEKEEDYLVQ------------NELIEEAIKRKPDVI 69 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HTCEEEECCCSSTTCHHHH------------HHHHHHHHHTCCSEE
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cCCEEEEecCCCCCCHHHH------------HHHHHHHHHhCCCEE
Confidence 345689999763 4 56666667777777765 47777663210 0000000 00011 123579999
Q ss_pred EEEeCchHHH-HHHHhcCCCCCcEEEEeCCCCc--cCccCCcchHH---HHHHHHHc
Q 009486 291 VTLGGDGTVL-WAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 291 IvLGGDGTlL-~aar~~~~~~~PILGIN~G~LG--FLt~~~~ed~~---~~L~~ll~ 341 (533)
|+.+.+.+-+ ...+.+...++|++.++...-+ .+.-+..++.. .+.+.+.+
T Consensus 70 i~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~ 126 (289)
T 3brs_A 70 LLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKN 126 (289)
T ss_dssp EECCSCTTTTHHHHTTTGGGTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHH
T ss_pred EEeCCChHHhHHHHHHHHHCCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHH
Confidence 9999886543 3455555568999999864322 23334444433 34455544
No 124
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=32.10 E-value=34 Score=34.30 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEE--ccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCC
Q 009486 231 SVQILCAQMVRWLREQKKLNIYV--EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKG 308 (533)
Q Consensus 231 ~~~~~~~el~~~L~e~~gi~V~v--e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~aar~~~~ 308 (533)
...+...++++.|.+ .+..+++ ...... ........ .+..|.+ ..++...+|++|+=||=||++-++..
T Consensus 251 ~~~~~~~~~~~al~~-~~~~~v~~~g~~~~~-~~~~~~~v-~~~~~~~---~~~ll~~~d~~v~~~G~~t~~Ea~~~--- 321 (416)
T 1rrv_A 251 GIADAAKVAVEAIRA-QGRRVILSRGWTELV-LPDDRDDC-FAIDEVN---FQALFRRVAAVIHHGSAGTEHVATRA--- 321 (416)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEECTTTTCC-CSCCCTTE-EEESSCC---HHHHGGGSSEEEECCCHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHH-CCCeEEEEeCCcccc-ccCCCCCE-EEeccCC---hHHHhccCCEEEecCChhHHHHHHHc---
Confidence 445667778888865 3455554 221110 00000011 1223332 23456889999999999999998875
Q ss_pred CCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 309 PVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 309 ~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++|++.+..+ ..|.+.+ ++++++.++|.++ ..
T Consensus 322 -G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 369 (416)
T 1rrv_A 322 -GVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LA 369 (416)
T ss_dssp -TCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TS
T ss_pred -CCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hC
Confidence 5799987652 2444333 5667788888887 53
No 125
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=31.90 E-value=29 Score=31.91 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=52.3
Q ss_pred eeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEE
Q 009486 212 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLV 290 (533)
Q Consensus 212 l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlV 290 (533)
+.|....+.|+|+.-..-++ .++ ...++.|++ .|++|.+-......+.. ..... + ..+..+.+. ..++|.+
T Consensus 2 ~~m~~t~~~v~il~~~gFe~-~E~-~~p~~~l~~-ag~~V~~~s~~~~~v~~-~~G~~-v---~~d~~l~~v~~~~yD~l 73 (177)
T 4hcj_A 2 NAMGKTNNILYVMSGQNFQD-EEY-FESKKIFES-AGYKTKVSSTFIGTAQG-KLGGM-T---NIDLLFSEVDAVEFDAV 73 (177)
T ss_dssp ---CCCCEEEEECCSEEECH-HHH-HHHHHHHHH-TTCEEEEEESSSEEEEE-TTSCE-E---EECEEGGGCCGGGCSEE
T ss_pred CccccCCCEEEEECCCCccH-HHH-HHHHHHHHH-CCCEEEEEECCCCeEee-CCCCE-E---ecCccHHHCCHhHCCEE
Confidence 45555566667665443332 222 345566655 57777653211111100 00010 0 011112222 3568999
Q ss_pred EEEeCchH--------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 291 VTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 291 IvLGGDGT--------lL~aar~~~~~~~PILGIN~G~ 320 (533)
|+-||-|+ ++...+.+...+.||.+|-.|.
T Consensus 74 iiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~ 111 (177)
T 4hcj_A 74 VFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGV 111 (177)
T ss_dssp EECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred EECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccH
Confidence 99999774 5666777777788999998774
No 126
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.79 E-value=1.9e+02 Score=26.82 Aligned_cols=110 Identities=11% Similarity=0.041 Sum_probs=63.0
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLG 294 (533)
+.++|+|+.. ..++-...+...+.+.+.+ .|+.+.+-..-..... . ..-+. -...++|-||+++
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~-~------------~~~~~~l~~~~vdgiIi~~ 72 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KGYSVLLANTAEDIVR-E------------REAVGQFFERRVDGLILAP 72 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCHHH-H------------HHHHHHHHHTTCSEEEECC
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHH-H------------HHHHHHHHHCCCCEEEEeC
Confidence 3467888875 4566667777788888876 5777766432110000 0 00011 1236799999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCCcc-CccCCcchHH---HHHHHHHc
Q 009486 295 GDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PILGIN~G~LGF-Lt~~~~ed~~---~~L~~ll~ 341 (533)
.+. .-.....+...++|++-++...-+. +.-+..++.. .+.+.+++
T Consensus 73 ~~~-~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (291)
T 3egc_A 73 SEG-EHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIA 122 (291)
T ss_dssp CSS-CCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 876 3344556667789999988753321 2334444433 44555554
No 127
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=31.31 E-value=2.1e+02 Score=27.32 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=47.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|++|+ .+..........+.+.|.+ .|+++..+..... ....+. ..+..+ ..++|.|++. +
T Consensus 138 g~~~ia~i~-~~~~~~~~~~~~~~~~l~~-~g~~v~~~~~~~~----~~~~~~--------~~~~~l~~~~~d~i~~~-~ 202 (358)
T 3hut_A 138 GFTSVAVIG-VTTDWGLSSAQAFRKAFEL-RGGAVVVNEEVPP----GNRRFD--------DVIDEIEDEAPQAIYLA-M 202 (358)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEEEEEEECT----TCCCCH--------HHHHHHHHHCCSEEEEE-S
T ss_pred CCCEEEEEe-cCcHHHHHHHHHHHHHHHH-cCCEEEEEEecCC----CCccHH--------HHHHHHHhcCCCEEEEc-c
Confidence 458999998 5666677777888888876 5777643321110 001111 111111 2467876665 5
Q ss_pred ch-H---HHHHHHhcCCCCCcEEEEe
Q 009486 296 DG-T---VLWAASIFKGPVPPIVPFS 317 (533)
Q Consensus 296 DG-T---lL~aar~~~~~~~PILGIN 317 (533)
|+ . ++++++.. +..+|++|..
T Consensus 203 ~~~~a~~~~~~~~~~-g~~~p~~~~~ 227 (358)
T 3hut_A 203 AYEDAAPFLRALRAR-GSALPVYGSS 227 (358)
T ss_dssp CHHHHHHHHHHHHHT-TCCCCEEECG
T ss_pred CchHHHHHHHHHHHc-CCCCcEEecC
Confidence 55 3 45555554 4568888743
No 128
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.01 E-value=2e+02 Score=27.61 Aligned_cols=89 Identities=12% Similarity=0.012 Sum_probs=52.9
Q ss_pred CCEEEEEEcC-CC-hhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhC---CCccEEEE
Q 009486 218 PQTVVILTKP-NS-NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH---TKVDLVVT 292 (533)
Q Consensus 218 pk~VlIV~K~-~~-~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~---~~~DlVIv 292 (533)
..+|+++... .. +-...+..-+.+.+.+ .|+++.+-..-... .. ....+..+. .++|.||+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~~~~~~~~~~~~-~~------------~~~~i~~~i~~~~~vDgiIi 68 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD-LGLDLRILYAERDP-QN------------TLQQARELFQGRDKPDYLML 68 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTCEEEEEECTTCH-HH------------HHHHHHHHHHSSSCCSEEEE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH-cCCeEEEEECCCCH-HH------------HHHHHHHHHhcCCCCCEEEE
Confidence 3578888753 33 5566677777777765 47777653211000 00 001122222 48999999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 293 LGGDGTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 293 LGGDGTlL~aar~~~~~~~PILGIN~G~ 320 (533)
.+.+...-...+.+...++||+-++...
T Consensus 69 ~~~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 69 VNEQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp ECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred eCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 9743444455667777899999998754
No 129
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=30.47 E-value=1.9e+02 Score=26.93 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=51.4
Q ss_pred CEEEEEEc-CCChhHHHHHHHHHHHHHhcCCe-EEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 219 QTVVILTK-PNSNSVQILCAQMVRWLREQKKL-NIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 219 k~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi-~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
++|||+.. ..++-...+..-+.+.+.+ .|. ++.+...-... ... ...+.. ...++|.||+.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLMNDSQNDQ-SKQ------------NDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEEEecCCCCH-HHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 46888875 4566666677777777765 565 76653211000 000 001111 2357999999998
Q ss_pred chHHH-HHHHhcCCCCCcEEEEeCC
Q 009486 296 DGTVL-WAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 296 DGTlL-~aar~~~~~~~PILGIN~G 319 (533)
|.+.. ...+.+...++|++-++..
T Consensus 69 ~~~~~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 69 DPAAAGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp SGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred CcchhHHHHHHHHHCCCcEEEecCC
Confidence 87532 3445555568999999874
No 130
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=30.33 E-value=38 Score=28.04 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 009486 80 AAQAEAAEWKRRFELERARNLRLENKEQS 108 (533)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (533)
-+|..+..||.|||=|..+....|+...+
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~~~ 53 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTLQS 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999987777776553
No 131
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.18 E-value=1.5e+02 Score=27.45 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=50.3
Q ss_pred CEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 009486 219 QTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 296 (533)
Q Consensus 219 k~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGD 296 (533)
++||++.. ..++-...+..-+.+.+.+ .|+++.+...-... ... ...+.. ...++|.+|+.+.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LGYEATIFDSQNDT-AKE------------SAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEECCSC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEeCCCCCH-HHH------------HHHHHHHHHcCCCEEEEecCC
Confidence 57888875 3566666777777778865 57776653211000 000 000111 23579999999887
Q ss_pred hHH-HHHHHhcCCCCCcEEEEeCC
Q 009486 297 GTV-LWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 297 GTl-L~aar~~~~~~~PILGIN~G 319 (533)
.+- ....+.+...++|++-++..
T Consensus 69 ~~~~~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 69 ADGSIANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSC
T ss_pred hHHHHHHHHHHHHCCCeEEEEecC
Confidence 542 22334443457899998864
No 132
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=30.12 E-value=75 Score=26.02 Aligned_cols=61 Identities=10% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCccEEEE---E-eCchH-HHHHHHhc----CCCCCcEEEEe----------CCCCccCc-cCCcchHHHHHHHHHcCCc
Q 009486 285 TKVDLVVT---L-GGDGT-VLWAASIF----KGPVPPIVPFS----------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 285 ~~~DlVIv---L-GGDGT-lL~aar~~----~~~~~PILGIN----------~G~LGFLt-~~~~ed~~~~L~~ll~G~y 344 (533)
..+|+||+ + |.||. +++..+.. ....+||+.+. .|-.|||. +++++++...|..++.|..
T Consensus 53 ~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 53 RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 35788887 2 55774 55555542 12456777764 34456765 4888999999999998764
Q ss_pred e
Q 009486 345 S 345 (533)
Q Consensus 345 ~ 345 (533)
.
T Consensus 133 ~ 133 (140)
T 3c97_A 133 E 133 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 133
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=30.01 E-value=78 Score=29.08 Aligned_cols=100 Identities=9% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEc-cchhH--HhhhcCCcccccccccchHHHhhh-CCCccEEEEE
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVE-PRVRA--ELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTL 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve-~~~a~--~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvL 293 (533)
+++|+|+.-+.-... + +...++.|+. .++++.+- +.-.. .+.. ..... + ..+..+.+. ..++|+||+.
T Consensus 2 ~~kV~ill~~g~~~~-e-~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~~-~~g~~-v---~~~~~l~~~~~~~~D~livp 73 (205)
T 2ab0_A 2 SASALVCLAPGSEET-E-AVTTIDLLVR-GGIKVTTASVASDGNLAITC-SRGVK-L---LADAPLVEVADGEYDVIVLP 73 (205)
T ss_dssp CCEEEEEECTTCCHH-H-HHHHHHHHHH-TTCEEEEEECSSTTCCEEEC-TTSCE-E---ECSEEHHHHTTSCCSEEEEC
T ss_pred CcEEEEEEcCCCcHH-H-HHHHHHHHHH-CCCEEEEEeCCCCCCceeec-CCCeE-E---ecCCCHHHCCcccCCEEEEC
Confidence 468999887665432 2 3345666765 46666542 21100 0100 00110 1 111122232 3578999999
Q ss_pred eCchH---------HHHHHHhcCCCCCcEEEEeCCCCccCc
Q 009486 294 GGDGT---------VLWAASIFKGPVPPIVPFSLGSLGFMT 325 (533)
Q Consensus 294 GGDGT---------lL~aar~~~~~~~PILGIN~G~LGFLt 325 (533)
||.|. ++...+.+...+.||.+|-.|...+|.
T Consensus 74 GG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa 114 (205)
T 2ab0_A 74 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLV 114 (205)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTT
T ss_pred CCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHH
Confidence 99642 334455555677899999888733444
No 134
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=29.61 E-value=1.5e+02 Score=25.86 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=56.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 296 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGD 296 (533)
.|++|+||.=..++.. +...++++|.+ .|.+||.-..-...+.. ...+ ..+.++...+|++|+.=-+
T Consensus 13 ~p~~IavIGaS~~~g~--~G~~~~~~L~~-~G~~V~~vnp~~~~i~G-------~~~~---~s~~el~~~vDlvii~vp~ 79 (138)
T 1y81_A 13 EFRKIALVGASKNPAK--YGNIILKDLLS-KGFEVLPVNPNYDEIEG-------LKCY---RSVRELPKDVDVIVFVVPP 79 (138)
T ss_dssp -CCEEEEETCCSCTTS--HHHHHHHHHHH-TTCEEEEECTTCSEETT-------EECB---SSGGGSCTTCCEEEECSCH
T ss_pred CCCeEEEEeecCCCCC--HHHHHHHHHHH-CCCEEEEeCCCCCeECC-------eeec---CCHHHhCCCCCEEEEEeCH
Confidence 4789999987666542 35678888876 57776642211111110 1111 1234566789999998888
Q ss_pred hHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 297 GTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 297 GTlL~aar~~~~~~~PILGIN~G~ 320 (533)
-.+..++..+...+++.+=+..|+
T Consensus 80 ~~v~~v~~~~~~~g~~~i~~~~~~ 103 (138)
T 1y81_A 80 KVGLQVAKEAVEAGFKKLWFQPGA 103 (138)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcc
Confidence 888888876655566666666654
No 135
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=29.42 E-value=1.1e+02 Score=24.53 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=39.6
Q ss_pred CccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEeC-------------CCCccCc-cCCcchHHHHHHHHHcC
Q 009486 286 KVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFSL-------------GSLGFMT-PFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 286 ~~DlVIv----LGGDG-TlL~aar~~~-~~~~PILGIN~-------------G~LGFLt-~~~~ed~~~~L~~ll~G 342 (533)
.+|+||+ =|+|| .+++..+... ...+||+-+.. |-.|||. +++++++...|..++.+
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 5788876 36677 4666666543 24678887653 6667765 48888898888888765
No 136
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=29.33 E-value=50 Score=33.13 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=42.2
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCcc---CCcchHHHHHHHHHcC
Q 009486 282 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 282 ~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt~---~~~ed~~~~L~~ll~G 342 (533)
++...+|++|+=||=||++-++.. ++|++.+..+ ..|.+.+ ++++++.++|..+ ..
T Consensus 297 ~~l~~~d~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 368 (415)
T 1iir_A 297 VLFGRVAAVIHHGGAGTTHVAARA----GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LT 368 (415)
T ss_dssp HHGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TS
T ss_pred HHHhhCCEEEeCCChhHHHHHHHc----CCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cC
Confidence 345889999999999999998875 6799988652 2454443 4677888888888 54
No 137
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=28.39 E-value=46 Score=33.44 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=41.9
Q ss_pred hhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeCC-------------CCccCc---cCCcchHHHHHHHHHc
Q 009486 281 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMT---PFHSEHYKDYLDSVLR 341 (533)
Q Consensus 281 ~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~G-------------~LGFLt---~~~~ed~~~~L~~ll~ 341 (533)
.++...+|++|+=||=||+..+... ++|++.+..+ ..|... +++++++.++|..+++
T Consensus 279 ~~ll~~~d~~v~~gG~~t~~Eal~~----GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 351 (404)
T 3h4t_A 279 QVLFGRVAAVVHHGGAGTTTAVTRA----GAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351 (404)
T ss_dssp HHHGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS
T ss_pred HHHHhhCcEEEECCcHHHHHHHHHc----CCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999988864 6799887542 234432 2466778888888876
No 138
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=28.29 E-value=1.5e+02 Score=27.11 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCcccc-cccccchHHHhhhCCCccEEEEEe
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSF-VQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~-i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
-|++|.+-.--..+.-.....++.+.|++. ++++++...+-... ........ ...+ ...+ .....+|+||.+-
T Consensus 3 ~M~kIYLAGP~Fs~~q~~~~~~l~~~L~~~~~g~~v~~P~~~~~~--~~~~~~~~~~~i~--~~D~-~~i~~aD~viA~l 77 (162)
T 3ehd_A 3 AMTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAI--NDKSAYADSKMIA--LADT-ENVLASDLLVALL 77 (162)
T ss_dssp -CEEEEEESCCSSHHHHHHHHHHHHHHHTTCTTEEEECGGGGSCC--CCTTCCCCHHHHH--HHHH-HHHHTCSEEEEEC
T ss_pred CccEEEEECCCCCHHHHHHHHHHHHHHHhcCCCCEEECCCccccc--cccccchHHHHHH--HHHH-HHHHHCCEEEEEC
Confidence 367899888877777777788899999753 58888765332110 00000000 0011 1112 2356799999863
Q ss_pred -C----chHHHHHHHhcCCCCCcEEEEeCC
Q 009486 295 -G----DGTVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 295 -G----DGTlL~aar~~~~~~~PILGIN~G 319 (533)
| .||..-.--... .++||+++...
T Consensus 78 dg~~~D~Gt~~EiG~A~a-~gkPVi~~~~D 106 (162)
T 3ehd_A 78 DGPTIDAGVASEIGVAYA-KGIPVVALYTD 106 (162)
T ss_dssp CSSSCCHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred CCCCCCCCHHHHHHHHHH-CCCEEEEEEcC
Confidence 2 688877654443 57899998653
No 139
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.08 E-value=2.7e+02 Score=25.80 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=49.9
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLG 294 (533)
+..+|+++.. ..++-...+...+.+.+.+ .|+.+.+...-... ... ...+. ....++|.||+.+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiI~~~ 72 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK-NGYRILLCNTESDL-ARS------------RSCLTLLSGKMVDGVITMD 72 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHTHHHHTTCCSEEEECC
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH-cCCEEEEEeCCCCH-HHH------------HHHHHHHHhCCCCEEEEeC
Confidence 3467898875 4666666777778888865 57777653211000 000 00011 1246799999998
Q ss_pred CchH--HHHHHHhcCCCCCcEEEEeCC
Q 009486 295 GDGT--VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 295 GDGT--lL~aar~~~~~~~PILGIN~G 319 (533)
.+.+ .+.. +. .++|++-++..
T Consensus 73 ~~~~~~~~~~---l~-~~iPvV~~~~~ 95 (285)
T 3c3k_A 73 ALSELPELQN---II-GAFPWVQCAEY 95 (285)
T ss_dssp CGGGHHHHHH---HH-TTSSEEEESSC
T ss_pred CCCChHHHHH---Hh-cCCCEEEEccc
Confidence 7643 3333 33 57899998763
No 140
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=28.06 E-value=1.9e+02 Score=26.97 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=60.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 296 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGD 296 (533)
.++|||+....++-...+...+.+.+.+ .|+.+.+...-... . ....+.. ...++|-||+++.|
T Consensus 12 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~--------~------~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 12 SRLLGVVFELQQPFHGDLVEQIYAAATR-RGYDVMLSAVAPSR--------A------EKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -CEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEEEBTTB--------C------HHHHHHHHTTTTEEEEEEETCC
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHH-CCCEEEEEeCCCCH--------H------HHHHHHHHHhCCCCEEEEECCC
Confidence 4678888866777777778888888876 57777664321100 0 0011111 34679999999876
Q ss_pred hHHHHHHHhcCCCCCcEEEEeCCCCc-cCccCCcchHH---HHHHHHHc
Q 009486 297 GTVLWAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 297 GTlL~aar~~~~~~~PILGIN~G~LG-FLt~~~~ed~~---~~L~~ll~ 341 (533)
.+- .....+.. ++|++-|+...-+ -+.-+..++.. .+.+.+++
T Consensus 77 ~~~-~~~~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 123 (289)
T 3k9c_A 77 FDT-DELGALAD-RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTE 123 (289)
T ss_dssp CCH-HHHHHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHH
Confidence 553 23333334 7899988864221 12234444443 44555554
No 141
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=28.05 E-value=17 Score=26.30 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 009486 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (533)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (533)
++++.|++-+|..-.++|+++||+
T Consensus 1 HsdGtFTsdyS~~l~~~aak~fv~ 24 (39)
T 1jrj_A 1 HGEGTFTSDLSKQMEEEAVRLFIE 24 (39)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999974
No 142
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=27.91 E-value=67 Score=35.08 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.3
Q ss_pred hCCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEeCCC
Q 009486 283 LHTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 283 ~~~~~DlVIvLGGDGT-----lL~aar~~~~~~~PILGIN~G~ 320 (533)
....+|-||.-||=|. .+.+++.+....+|+|||-+|.
T Consensus 352 ~L~~~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLGm 394 (550)
T 1vco_A 352 AFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGL 394 (550)
T ss_dssp HTTTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred HHhcCCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcCH
Confidence 3467899999998664 3456666555679999999885
No 143
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.68 E-value=1.7e+02 Score=27.02 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred CEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 009486 219 QTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 296 (533)
Q Consensus 219 k~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGGD 296 (533)
++|+++... .++-...+...+.+.+.+ .|+.+.+-..-.... .+ ...+. ....++|-||+.+.|
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QGYSMLLTSTNNNPD-NE------------RRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TTCEEEEEECTTCHH-HH------------HHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCCChH-HH------------HHHHHHHHHCCCCEEEEeccc
Confidence 689988764 556677777888888876 577776642110000 00 00111 124679999999987
Q ss_pred hH----HHHHHHhcCCCCCcEEEEeCCCCcc-CccCCcchHH---HHHHHHHc
Q 009486 297 GT----VLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 297 GT----lL~aar~~~~~~~PILGIN~G~LGF-Lt~~~~ed~~---~~L~~ll~ 341 (533)
.+ .......+...++|++-++...-+. +.-+..++.. .+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~ 134 (298)
T 3tb6_A 82 SALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLS 134 (298)
T ss_dssp TTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHH
Confidence 63 2233444445678999988642221 2224444433 44555554
No 144
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=27.57 E-value=3.2e+02 Score=24.05 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=40.1
Q ss_pred CccEEEEE----eCchH-HHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCc
Q 009486 286 KVDLVVTL----GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPI 344 (533)
Q Consensus 286 ~~DlVIvL----GGDGT-lL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y 344 (533)
.+|+||+= |.||. +++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.|..
T Consensus 51 ~~dlvllD~~lp~~~g~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 51 DPDLILLDLNMPGMNGLETLDKLREK-SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp CCSEEEEETTSTTSCHHHHHHHHHHS-CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 47888872 56773 45555554 3457776654 477788764 888999999999988753
No 145
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.52 E-value=1.7e+02 Score=27.17 Aligned_cols=110 Identities=10% Similarity=0.033 Sum_probs=55.6
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEc-cchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEE
Q 009486 217 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVE-PRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTL 293 (533)
Q Consensus 217 ~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve-~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvL 293 (533)
+.++|+++.. ..++-...+...+.+.+.+ .|+++.+. ..-.. .... ...+. ....++|.+|+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiI~~ 72 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK-NGYNLIIVYSGSAD-PEEQ------------KHALLTAIERPVMGILLL 72 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TTCEEEEEC-----------------------CHHHHHHSSCCSEEEEE
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCC-HHHH------------HHHHHHHHhcCCCEEEEe
Confidence 3467888874 4666667777778888865 67777664 21110 0000 00011 124679999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEeCCCCccCccCCcchH---HHHHHHHHc
Q 009486 294 GGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHY---KDYLDSVLR 341 (533)
Q Consensus 294 GGDGTlL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~---~~~L~~ll~ 341 (533)
+.+.+- .....+...++|++-++...-+.+.-+..++. ..+.+.+.+
T Consensus 73 ~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (290)
T 3clk_A 73 SIALTD-DNLQLLQSSDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLIN 122 (290)
T ss_dssp SCC-----CHHHHHCC--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHT
T ss_pred cccCCH-HHHHHHHhCCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHH
Confidence 887541 12233334678999988643222222444443 344555554
No 146
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.38 E-value=1.7e+02 Score=27.17 Aligned_cols=109 Identities=9% Similarity=0.110 Sum_probs=60.1
Q ss_pred CCCEEEEEEcCCC---hhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh--hCCCccEEE
Q 009486 217 PPQTVVILTKPNS---NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL--LHTKVDLVV 291 (533)
Q Consensus 217 ~pk~VlIV~K~~~---~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~DlVI 291 (533)
+.++|||+..... +-...+...+.+.+.+ .|..+.+...-... + ....+.. ...++|-||
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~---~-----------~~~~~~~~l~~~~vdgiI 71 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQYHLVVTPHIHAK---D-----------SMVPIRYILETGSADGVI 71 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SSCEEEECCBSSGG---G-----------TTHHHHHHHHHTCCSEEE
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cCCEEEEecCCcch---h-----------HHHHHHHHHHcCCccEEE
Confidence 3567998876432 6677777777777765 67887764321110 0 0011111 136799999
Q ss_pred EEeCchHHHHHHHhcCCCCCcEEEEeCCCCcc-CccCCcchH---HHHHHHHHc
Q 009486 292 TLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 341 (533)
Q Consensus 292 vLGGDGTlL~aar~~~~~~~PILGIN~G~LGF-Lt~~~~ed~---~~~L~~ll~ 341 (533)
+++.+.+- .....+...++|++-++...-+. +.-+..++. ..+.+.+++
T Consensus 72 i~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 124 (288)
T 3gv0_A 72 ISKIEPND-PRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQ 124 (288)
T ss_dssp EESCCTTC-HHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHH
T ss_pred EecCCCCc-HHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHH
Confidence 99876442 22333334578999888643221 222444443 345555554
No 147
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=26.91 E-value=2e+02 Score=27.44 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=40.7
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEeC-C--------CCccCccCCcchHHHHHHHHHcC
Q 009486 279 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-G--------SLGFMTPFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 279 ~~~~~~~~~DlVIvLGGDGTlL~aar~~~~~~~PILGIN~-G--------~LGFLt~~~~ed~~~~L~~ll~G 342 (533)
++..+...+|++|+-.| |++|-|+.. +.||+..+. | .-||+.+-+++++.++|..+++.
T Consensus 275 ~~~~~~~~ad~~v~~sg-~~~lEA~a~----G~Pvi~~~~~~~~~e~v~~g~g~~v~~d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 275 DFHNVAARSYLMLTDSG-GVQEEAPSL----GVPVLVLRDTTERPEGIEAGTLKLAGTDEETIFSLADELLSD 342 (375)
T ss_dssp HHHHHHHTCSEEEECCH-HHHHHHHHH----TCCEEECSSCCSCHHHHHTTSEEECCSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcEEEECCC-ChHHHHHhc----CCCEEEecCCCCCceeecCCceEEcCCCHHHHHHHHHHHHhC
Confidence 55667788999987552 444445432 578887632 2 16888866888899999888864
No 148
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=26.80 E-value=86 Score=34.23 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=68.9
Q ss_pred eeecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccc---------------
Q 009486 212 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKD--------------- 276 (533)
Q Consensus 212 l~w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~--------------- 276 (533)
|-+..+.++++|-. .+++.+.++++.+ .+ .|++++--..+++.|...+.....+.....
T Consensus 18 ~~~~~~i~raLISV-~DK~glv~~Ak~L----~~-lGfeI~ATgGTak~L~e~GI~v~~V~kvTgfPEil~GRVKTLHP~ 91 (534)
T 4ehi_A 18 LYFQSNAMRALLSV-SDKEGIVEFGKEL----EN-LGFEILSTGGTFKLLKENGIKVIEVSDFTKSPELFEGRVKTLHPK 91 (534)
T ss_dssp EEECTTCCEEEEEE-SSCTTHHHHHHHH----HH-TTCEEEECHHHHHHHHHTTCCCEECBCCC----------------
T ss_pred eeeccCCcEEEEEE-cccccHHHHHHHH----HH-CCCEEEEccHHHHHHHHCCCceeehhhccCCchhhCCccccCChh
Confidence 45666788888877 5777776555554 34 578877666666555432222111110000
Q ss_pred -----------hHHHhh----hCCCccEEEE-----------------------EeCchHHHHHH-HhcCCCCCcEEEEe
Q 009486 277 -----------EKEILL----LHTKVDLVVT-----------------------LGGDGTVLWAA-SIFKGPVPPIVPFS 317 (533)
Q Consensus 277 -----------~~~~~~----~~~~~DlVIv-----------------------LGGDGTlL~aa-r~~~~~~~PILGIN 317 (533)
+....+ -...+|+||+ |||= ||||+| +.+. . +-|+
T Consensus 92 IhgGiLa~r~~~~h~~~l~~~~I~~iDlVvvNLYPF~~tv~~~~~~~~~iE~IDIGGp-smlRAAAKN~~-~-V~Vv--- 165 (534)
T 4ehi_A 92 IHGGILHKRSDENHIKQAKENEILGIDLVCVNLYPFKKTTIMSDDFDEIIENIDIGGP-AMIRSAAKNYK-D-VMVL--- 165 (534)
T ss_dssp ----------------------CEEESEEEEECCCHHHHHHHCCCHHHHHHTSCSSHH-HHHHHHHHTTT-T-CEEE---
T ss_pred hhhhhccCCCCHHHHHHHHHcCCCceeEEEEeCcChHHHHhcCCCHHHHHHHhhcCcH-HHHHHHHHcCC-C-EEEE---
Confidence 000000 1244677765 5774 777755 5443 2 2233
Q ss_pred CCCCccCccCCcchHHHHHHHHHcCCceEEEEeeeeEE
Q 009486 318 LGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCH 355 (533)
Q Consensus 318 ~G~LGFLt~~~~ed~~~~L~~ll~G~y~ie~R~rL~v~ 355 (533)
.+|++|...|+.+..|....+.|.+|-.+
T Consensus 166 ---------~dp~dY~~vl~~l~~g~~~~~~R~~lA~k 194 (534)
T 4ehi_A 166 ---------CDPLDYEKVIETLKKGQNDENFRLNLMIK 194 (534)
T ss_dssp ---------CCGGGHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 36888888888887787777777666443
No 149
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.63 E-value=1.1e+02 Score=28.45 Aligned_cols=114 Identities=7% Similarity=-0.094 Sum_probs=60.4
Q ss_pred CCCEEEEEEcC--CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 009486 217 PPQTVVILTKP--NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 293 (533)
Q Consensus 217 ~pk~VlIV~K~--~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvL 293 (533)
+.++|+++... .++-...+...+.+.+.+++|..+.+....... . + .... ...+.. ...++|-||+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~---~----~-~~~~--~~~i~~l~~~~vdgiii~ 76 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP---Y----D-YNSF--VATSQAVIEEQPDGVMFA 76 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS---S----C-HHHH--HHHHHHHHTTCCSEEEEC
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC---C----C-HHHH--HHHHHHHHhcCCCEEEEC
Confidence 45678877654 577777777778888865324555442110000 0 0 0000 001111 24679999999
Q ss_pred eCchHH-HHHHHhcCCCCCcEEEEeCCCCc--cCccCCcchHH---HHHHHHH
Q 009486 294 GGDGTV-LWAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHYK---DYLDSVL 340 (533)
Q Consensus 294 GGDGTl-L~aar~~~~~~~PILGIN~G~LG--FLt~~~~ed~~---~~L~~ll 340 (533)
+.|... -...+.+...++|++-|+...-+ .+.-+..++.. .+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~ 129 (304)
T 3gbv_A 77 PTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLM 129 (304)
T ss_dssp CSSGGGTHHHHHHHHHHTCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHH
Confidence 988653 23344444457899999874332 23344455543 3444444
No 150
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=26.53 E-value=4e+02 Score=24.86 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=39.2
Q ss_pred CccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHc
Q 009486 286 KVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLR 341 (533)
Q Consensus 286 ~~DlVIv----LGGDG-TlL~aar~~~-~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~ 341 (533)
.+|+||+ =|.|| .+++..|... ...+||+.+. .|-.|||+. ++++++...+.++++
T Consensus 169 ~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 169 AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 3788886 36788 6777777643 3468888654 477788765 888888877777654
No 151
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.40 E-value=1.1e+02 Score=24.50 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=41.3
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCce
Q 009486 286 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 286 ~~DlVIv----LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ 345 (533)
.+|+||+ -|+|| .+++..+.. ...+||+-+. .|-.|||.. ++++++..+|..+++|...
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLETLRKR-QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHT-TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEecCCCCCChHHHHHHHHhc-CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 5788887 25566 456666654 3467887654 466777654 8889999999999988643
No 152
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.33 E-value=2e+02 Score=27.47 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=62.1
Q ss_pred CCCEEEEEEcC---CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEE
Q 009486 217 PPQTVVILTKP---NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVT 292 (533)
Q Consensus 217 ~pk~VlIV~K~---~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIv 292 (533)
+.++||++... .++-...+...+.+.+.+ .|+.+.+...-...- .+ ...+. -...++|-||+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdgiIi 125 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGRQLLLADGKHSAE-EE------------RQAIQYLLDLRCDAIMI 125 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TTCEEEEEECTTSHH-HH------------HHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHH-CCCEEEEEeCCCChH-HH------------HHHHHHHHhCCCCEEEE
Confidence 35789988764 566667777888888876 577776643111000 00 00011 12357999999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEeCCCCcc-CccCCcchHH---HHHHHHHc
Q 009486 293 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 293 LGGDGTlL~aar~~~~~~~PILGIN~G~LGF-Lt~~~~ed~~---~~L~~ll~ 341 (533)
.+.+.+--.....+...++|++-++...-+. +.-+..++.. .+.+.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 178 (338)
T 3dbi_A 126 YPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELIN 178 (338)
T ss_dssp CCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHH
T ss_pred eCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 9877553333344444568999888643331 2224445543 45555554
No 153
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.31 E-value=26 Score=30.56 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=56.4
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE-EccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY-VEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~-ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
+.|++|+||.-..++. .....++++|.+. |.+|| |.+... ++... ..+ ..+.++.. +|++++.=
T Consensus 2 ~~p~siAVVGaS~~~~--~~g~~v~~~L~~~-g~~V~pVnP~~~-~i~G~-------~~y---~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 2 NAMKKTLILGATPETN--RYAYLAAERLKSH-GHEFIPVGRKKG-EVLGK-------TII---NERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCCCEEEETCCSCTT--SHHHHHHHHHHHH-TCCEEEESSSCS-EETTE-------ECB---CSCCCCTT-CCEEEECS
T ss_pred CCCCEEEEEccCCCCC--CHHHHHHHHHHHC-CCeEEEECCCCC-cCCCe-------ecc---CChHHCCC-CCEEEEEe
Confidence 4589999998776664 4568899999864 45554 344322 11111 111 12345667 99999988
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCC
Q 009486 295 GDGTVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 295 GDGTlL~aar~~~~~~~PILGIN~G 319 (533)
.--.+..+++.+...+++.+=++.|
T Consensus 67 p~~~v~~~v~e~~~~g~k~v~~~~G 91 (122)
T 3ff4_A 67 NPQNQLSEYNYILSLKPKRVIFNPG 91 (122)
T ss_dssp CHHHHGGGHHHHHHHCCSEEEECTT
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC
Confidence 8888888777766555555446555
No 154
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.07 E-value=2.2e+02 Score=26.19 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=48.1
Q ss_pred CCCEEEEEEc---CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEE
Q 009486 217 PPQTVVILTK---PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVT 292 (533)
Q Consensus 217 ~pk~VlIV~K---~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIv 292 (533)
+..+|+++.. ..++-...+...+.+.+.+ .|+++.+...-... ... ...+.. ...++|.||+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgii~ 83 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGRQLLLADGKHSA-EEE------------RQAIQYLLDLRCDAIMI 83 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TTCEEEEECCTTSH-HHH------------HHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CCCEEEEEeCCCCH-HHH------------HHHHHHHHhcCCCEEEE
Confidence 3567998875 3556666777777788865 57777663211100 000 001111 2357999999
Q ss_pred EeCchH--HHHHHHhcCC-CCCcEEEEeCC
Q 009486 293 LGGDGT--VLWAASIFKG-PVPPIVPFSLG 319 (533)
Q Consensus 293 LGGDGT--lL~aar~~~~-~~~PILGIN~G 319 (533)
.+.|.+ .+..+ .. .++|++-++..
T Consensus 84 ~~~~~~~~~~~~l---~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 84 YPRFLSVDEIDDI---IDAHSQPIMVLNRR 110 (296)
T ss_dssp ECSSSCHHHHHHH---HHTCSSCEEEESCC
T ss_pred ecCCCChHHHHHH---HhcCCCCEEEEccc
Confidence 988643 33333 23 57899998764
No 155
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=25.88 E-value=30 Score=31.65 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=50.9
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHH-hhhcCCcccccccccchHHHhhh-CCCccEEEEEe
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAE-LLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLG 294 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~-l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLG 294 (533)
.+++|+|+.-+.-... + +....+.|.. .++++.+-...... +... .....+. .+..+.+. ..++|.||+.|
T Consensus 22 ~~~kV~ill~~g~~~~-e-~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~-~g~~~v~---~~~~l~~~~~~~~D~livpG 94 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDS-E-FTSPADEFRK-AGHEVITIEKQAGKTVKGK-KGEASVT---IDKSIDEVTPAEFDALLLPG 94 (193)
T ss_dssp CCCEEEEECCTTBCTH-H-HHHHHHHHHH-TTCEEEEEESSTTCEEECT-TSSCEEE---CCEEGGGCCGGGCSEEEECC
T ss_pred cCCEEEEEECCCCCHH-H-HHHHHHHHHH-CCCEEEEEECCCCcceecC-CCCeEEE---CCCChHHCCcccCCEEEECC
Confidence 3678999987644322 2 2345666654 46666542111110 1000 0000000 01111221 24689999999
Q ss_pred CchH--------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 295 GDGT--------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 295 GDGT--------lL~aar~~~~~~~PILGIN~G~ 320 (533)
|.|+ ++...+.+...+.||.||-.|.
T Consensus 95 G~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~ 128 (193)
T 1oi4_A 95 GHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP 128 (193)
T ss_dssp BTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred CcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 9553 4555566556788999999886
No 156
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=25.79 E-value=1.5e+02 Score=28.96 Aligned_cols=86 Identities=16% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|++|+. +.+.....+..+.+.|++ .|+++..+..... ....+. ..+..+ ..++|.|++.+.
T Consensus 142 g~~~iaii~~-~~~~g~~~~~~~~~~l~~-~G~~v~~~~~~~~----~~~d~~--------~~~~~l~~~~~dav~~~~~ 207 (392)
T 3lkb_A 142 KGAKVALVVH-PSPFGRAPVEDARKAARE-LGLQIVDVQEVGS----GNLDNT--------ALLKRFEQAGVEYVVHQNV 207 (392)
T ss_dssp TTCEEEEEEC-SSHHHHTTHHHHHHHHHH-HTCEEEEEEECCT----TCCCCH--------HHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEEEe-CCchhhhHHHHHHHHHHH-cCCeEEEEEeeCC----CCcCHH--------HHHHHHHhcCCCEEEEecC
Confidence 3489999984 455556667777788866 4777654332111 111111 111111 257899998887
Q ss_pred chHHHHHHHhcC--CCCCcEEEE
Q 009486 296 DGTVLWAASIFK--GPVPPIVPF 316 (533)
Q Consensus 296 DGTlL~aar~~~--~~~~PILGI 316 (533)
|.....+.+.+. +..+|++|.
T Consensus 208 ~~~a~~~~~~~~~~g~~~~~~~~ 230 (392)
T 3lkb_A 208 AGPVANILKDAKRLGLKMRHLGA 230 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEC
T ss_pred cchHHHHHHHHHHcCCCceEEEe
Confidence 755544444332 456788875
No 157
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=25.75 E-value=27 Score=32.92 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCccEEEEEeCchH-------------------HHHHHHhcCCCCCcEEEEeCCCC
Q 009486 285 TKVDLVVTLGGDGT-------------------VLWAASIFKGPVPPIVPFSLGSL 321 (533)
Q Consensus 285 ~~~DlVIvLGGDGT-------------------lL~aar~~~~~~~PILGIN~G~L 321 (533)
.++|+||+-||.|+ ++...+.+...+.||.+|-.|..
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~ 144 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA 144 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHH
Confidence 46899999999776 56677777777889999999985
No 158
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=25.63 E-value=1.2e+02 Score=26.43 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=40.9
Q ss_pred hHHHhhhCCCccEEEEEe---C-chHHHHHHHhcCCCCCcEEEEeC--------CCCccCccC-CcchHHHHHHHHHc
Q 009486 277 EKEILLLHTKVDLVVTLG---G-DGTVLWAASIFKGPVPPIVPFSL--------GSLGFMTPF-HSEHYKDYLDSVLR 341 (533)
Q Consensus 277 ~~~~~~~~~~~DlVIvLG---G-DGTlL~aar~~~~~~~PILGIN~--------G~LGFLt~~-~~ed~~~~L~~ll~ 341 (533)
..++..+...+|++|..- | =.+++-+.. .+.||+.-+. |..||+.+. +++++.++|..+++
T Consensus 106 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a----~G~PvI~~~~~~~~e~~~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 106 REFVRELYGSVDFVIIPSYFEPFGLVALEAMC----LGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHH----TTCEEEEESCHHHHHHCCTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEECCCCCCccHHHHHHHH----CCCCEEEeCCCChHHHcCCCceEEecCCCHHHHHHHHHHHHh
Confidence 345666778899998744 1 134444443 3679998775 456887764 67788888888775
No 159
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.58 E-value=1.4e+02 Score=28.58 Aligned_cols=87 Identities=13% Similarity=-0.031 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|++|+ .+..........+.+.|.+ .|+++..+..... ....+. ..+..+ ..++|.|++.+.
T Consensus 138 g~~~ia~i~-~~~~~g~~~~~~~~~~l~~-~g~~v~~~~~~~~----~~~d~~--------~~~~~l~~~~~d~v~~~~~ 203 (368)
T 4eyg_A 138 GIKKVATLT-SDYAPGNDALAFFKERFTA-GGGEIVEEIKVPL----ANPDFA--------PFLQRMKDAKPDAMFVFVP 203 (368)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEEEEEEECS----SSCCCH--------HHHHHHHHHCCSEEEEECC
T ss_pred CCCEEEEEe-cCchHhHHHHHHHHHHHHH-cCCEEEEEEeCCC----CCCcHH--------HHHHHHHhcCCCEEEEecc
Confidence 357899998 4556566667778888876 5777654322110 011111 111111 246899999777
Q ss_pred chHH---HHHHHhcCCC--CCcEEEEe
Q 009486 296 DGTV---LWAASIFKGP--VPPIVPFS 317 (533)
Q Consensus 296 DGTl---L~aar~~~~~--~~PILGIN 317 (533)
|... +++++...-. .+|++|.+
T Consensus 204 ~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 204 AGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp TTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred chHHHHHHHHHHHcCCCcCCceEEecC
Confidence 7654 4444444311 27899875
No 160
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.49 E-value=1.1e+02 Score=29.33 Aligned_cols=90 Identities=6% Similarity=-0.126 Sum_probs=51.3
Q ss_pred CCCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCC--ccEEE
Q 009486 216 SPPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTK--VDLVV 291 (533)
Q Consensus 216 ~~pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~--~DlVI 291 (533)
.+..+|+++.. ..++-...+...+.+.+.+ .|+++.+...-... ..+ ...+.. ...+ +|.||
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~l~~~~~~~~~-~~~------------~~~i~~l~~~~~~vdgiI 68 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGLPYVPLTTEGSS-EKG------------IADIRALLQKTGGNLVLN 68 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTCCEEEEECTTCH-HHH------------HHHHHHHHHHTTTCEEEE
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCCEEEEecCCCCH-HHH------------HHHHHHHHHCCCCCCEEE
Confidence 34568998875 4566666777777777765 46666553210000 000 000111 1245 99999
Q ss_pred EEeCchHHH-HHHHhcCCCCCcEEEEeCC
Q 009486 292 TLGGDGTVL-WAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 292 vLGGDGTlL-~aar~~~~~~~PILGIN~G 319 (533)
+.+.+..-+ ...+.+...++|++.++..
T Consensus 69 i~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 69 VDPNDSADARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred EeCCCHHHHHHHHHHHHHCCCeEEEECCC
Confidence 999886532 2334443457899998864
No 161
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.46 E-value=2.7e+02 Score=22.55 Aligned_cols=102 Identities=18% Similarity=0.276 Sum_probs=59.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----E
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----L 293 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv----L 293 (533)
+.+|+||- +++... ..+..+|.+ .|+.|..-.+..+.+. .+. ...+|+||+ =
T Consensus 4 ~~~iLivd--d~~~~~---~~l~~~L~~-~g~~v~~~~~~~~al~----------------~~~--~~~~dlvl~D~~lp 59 (136)
T 3t6k_A 4 PHTLLIVD--DDDTVA---EMLELVLRG-AGYEVRRAASGEEALQ----------------QIY--KNLPDALICDVLLP 59 (136)
T ss_dssp CCEEEEEC--SCHHHH---HHHHHHHHH-TTCEEEEESSHHHHHH----------------HHH--HSCCSEEEEESCCS
T ss_pred CCEEEEEe--CCHHHH---HHHHHHHHH-CCCEEEEeCCHHHHHH----------------HHH--hCCCCEEEEeCCCC
Confidence 46788874 444443 344555544 5677664333222110 011 235788887 2
Q ss_pred eCch-HHHHHHHhcC-CCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCC
Q 009486 294 GGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 294 GGDG-TlL~aar~~~-~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~ 343 (533)
|.|| .+++..+... ...+||+-+. .|-.+||.. ++++++...|..++.+.
T Consensus 60 ~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 60 GIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp SSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 6677 4556665432 3467887654 366777664 88899999999888754
No 162
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=25.19 E-value=98 Score=26.83 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=41.5
Q ss_pred CccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHc
Q 009486 286 KVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLR 341 (533)
Q Consensus 286 ~~DlVIv----LGGDG-TlL~aar~~~-~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~ 341 (533)
.+|+||+ =|.|| .+++..|... ...+||+-+. .|--+||+. |+++++.+.|.++++
T Consensus 57 ~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 5888887 37788 6777777643 3578998765 467778775 888888888887764
No 163
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.86 E-value=1.3e+02 Score=27.42 Aligned_cols=111 Identities=9% Similarity=0.028 Sum_probs=60.1
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGG 295 (533)
.++||++... .++-...+...+.+.+.+ .|+.+.+-..-... ... ...+. -...++|-||+.+.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~~~ 67 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARA-RGYQLLIASSDDQP-DSE------------RQLQQLFRARRCDALFVASC 67 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEECCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHH-CCCEEEEEeCCCCH-HHH------------HHHHHHHHHcCCCEEEEecC
Confidence 3678888764 566667777778888866 57777664211100 000 00011 12357999999988
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCCcc-CccCCcchH---HHHHHHHHcC
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLRG 342 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~LGF-Lt~~~~ed~---~~~L~~ll~G 342 (533)
+..--.....+...++|++-++...-+. +.-+..++. ..+.+.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~ 118 (272)
T 3o74_A 68 LPPEDDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSS 118 (272)
T ss_dssp CCSSCCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHC
Confidence 7321222233334578999888643221 222344443 3455666653
No 164
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.75 E-value=2.6e+02 Score=22.13 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEe------------CCCCccCc-cCCcchHHHHHHHHHcCC
Q 009486 285 TKVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 343 (533)
Q Consensus 285 ~~~DlVIv----LGGDG-TlL~aar~~~-~~~~PILGIN------------~G~LGFLt-~~~~ed~~~~L~~ll~G~ 343 (533)
..+|+||+ -|.|| .+++..+... ...+||+-+. .|-.+||. +++++++...|..++++.
T Consensus 46 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 46 HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 35788887 35566 3555566542 2467887654 24555654 588889999999988754
No 165
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=24.71 E-value=1.6e+02 Score=25.63 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGG 295 (533)
.|++|+||.-..++. .+...++++|.+ .|.+||- .+. ...+.. +..+ ..+.++...+|++|+.=-
T Consensus 21 ~p~~iaVVGas~~~g--~~G~~~~~~l~~-~G~~v~~Vnp~-~~~i~G-------~~~y---~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 21 RYKKIALVGASPKPE--RDANIVMKYLLE-HGYDVYPVNPK-YEEVLG-------RKCY---PSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp HCCEEEEETCCSCTT--SHHHHHHHHHHH-TTCEEEEECTT-CSEETT-------EECB---SSGGGCSSCCSEEEECSC
T ss_pred CCCEEEEEccCCCCC--chHHHHHHHHHH-CCCEEEEECCC-CCeECC-------eecc---CCHHHcCCCCCEEEEEeC
Confidence 378999998765543 235677788876 5667653 222 111110 1111 123456678999999988
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCC
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~ 320 (533)
+-....++..+...+++.+=+..|.
T Consensus 87 ~~~~~~vv~~~~~~gi~~i~~~~g~ 111 (144)
T 2d59_A 87 PKLTMEYVEQAIKKGAKVVWFQYNT 111 (144)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc
Confidence 8888888877665666766555553
No 166
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.25 E-value=2.2e+02 Score=26.42 Aligned_cols=87 Identities=10% Similarity=-0.077 Sum_probs=53.4
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 009486 218 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGG 295 (533)
+.+||++.. ..++-...+..-+.+.+.+ .|+++.+-.. .. .... ...+. .+..++|-||+.+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~-~~-~~~~------------~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LGFEVIKIAV-PD-GEKT------------LNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HTEEEEEEEC-CS-HHHH------------HHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cCCEEEEeCC-CC-HHHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 457888875 4566666777777777766 4777765322 10 0000 00111 12357999999999
Q ss_pred chHHHH-HHHhcCCCCCcEEEEeCC
Q 009486 296 DGTVLW-AASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 296 DGTlL~-aar~~~~~~~PILGIN~G 319 (533)
|.+... ..+.+...++||+-++..
T Consensus 67 ~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 67 DPKLGSAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEESSC
T ss_pred CchhhHHHHHHHHHCCCcEEEeCCC
Confidence 876544 345555568999999853
No 167
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=24.23 E-value=1.1e+02 Score=27.29 Aligned_cols=77 Identities=5% Similarity=0.096 Sum_probs=46.9
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhh-cCCccccccccc--chHHHhhh--CCCccE
Q 009486 216 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT-ESSYFSFVQTWK--DEKEILLL--HTKVDL 289 (533)
Q Consensus 216 ~~pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~-~~~~~~~i~~~~--~~~~~~~~--~~~~Dl 289 (533)
+.+++|+|+.+- +++++.++++++.+.|. |.+++--..++..+.. .+.....+.... .+..+.++ .+++|+
T Consensus 1 ~~~~~ialsv~D~dK~~~v~~a~~~~~ll~---Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdl 77 (134)
T 2xw6_A 1 SHMRALALIAHDAKKEEMVAFCQRHREVLA---RFPLVATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILA 77 (134)
T ss_dssp CCSCEEEEEECGGGHHHHHHHHHHTHHHHT---TSCEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEE
T ss_pred CCccEEEEEEecccHHHHHHHHHHHHHHhC---CCEEEEccHHHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccE
Confidence 356789988874 66888888888888773 6778887777776654 332222222211 12222222 367888
Q ss_pred EEEEeC
Q 009486 290 VVTLGG 295 (533)
Q Consensus 290 VIvLGG 295 (533)
||-+=.
T Consensus 78 VInt~~ 83 (134)
T 2xw6_A 78 VIFFRD 83 (134)
T ss_dssp EEEECC
T ss_pred EEEccC
Confidence 887643
No 168
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.98 E-value=2.7e+02 Score=22.02 Aligned_cols=105 Identities=13% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE---
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL--- 293 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL--- 293 (533)
.+.+|+||- +++... ..+..+|.+ .++.|..-.+....+. .+. ...+|+||+=
T Consensus 5 ~~~~ilivd--d~~~~~---~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlii~d~~l 60 (132)
T 3lte_A 5 QSKRILVVD--DDQAMA---AAIERVLKR-DHWQVEIAHNGFDAGI----------------KLS--TFEPAIMTLDLSM 60 (132)
T ss_dssp --CEEEEEC--SCHHHH---HHHHHHHHH-TTCEEEEESSHHHHHH----------------HHH--HTCCSEEEEESCB
T ss_pred CCccEEEEE--CCHHHH---HHHHHHHHH-CCcEEEEeCCHHHHHH----------------HHH--hcCCCEEEEecCC
Confidence 356788885 344443 445555654 5677665433222110 011 1357888772
Q ss_pred -eCch-HHHHHHHhcCC-CCCcEEEEe------------CCCCccCc-cCCcchHHHHHHHHHcCCce
Q 009486 294 -GGDG-TVLWAASIFKG-PVPPIVPFS------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 294 -GGDG-TlL~aar~~~~-~~~PILGIN------------~G~LGFLt-~~~~ed~~~~L~~ll~G~y~ 345 (533)
|+|| .+++..+.... ..+||+-+. .|-.+||. +++++++...|.....|.+.
T Consensus 61 ~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 61 PKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp TTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCCC
Confidence 4455 45555555432 356665543 25566655 48888888888888877653
No 169
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.81 E-value=2.2e+02 Score=26.81 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=53.8
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 009486 218 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K~-~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~DlVIvLGG 295 (533)
.++|||+... .++-...+..-+.+.+.+ .|+++.+...-... ..+ ...+. .+..++|.||+.+-
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AGYKTDLQYADDDI-PNQ------------LSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cCCEEEEeeCCCCH-HHH------------HHHHHHHHHcCCCEEEEEcC
Confidence 4678988764 566667777778888866 57777664311100 000 00011 12357999999998
Q ss_pred chHH-HHHHHhcCCCCCcEEEEeCCC
Q 009486 296 DGTV-LWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 296 DGTl-L~aar~~~~~~~PILGIN~G~ 320 (533)
|.+. -...+.+...++||+-++...
T Consensus 69 ~~~~~~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 69 DGTTLSDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp SGGGGHHHHHHHHHTTCEEEEESSCC
T ss_pred CchhHHHHHHHHHHCCCCEEEECCCC
Confidence 8653 334444545689999998743
No 170
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=23.53 E-value=2.6e+02 Score=27.50 Aligned_cols=87 Identities=9% Similarity=-0.024 Sum_probs=48.7
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEE
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVT 292 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIv 292 (533)
|....++|+||+- ++.--...+..+.+.+.+ .|++|........ ....+. ..+.++ ..++|.|++
T Consensus 160 ~~~~~~~vail~~-~~~~g~~~~~~~~~~~~~-~g~~vv~~~~~~~----~~~d~~--------~~l~~i~~~~~d~v~~ 225 (419)
T 3h5l_A 160 FSRPNNKIAIITG-PGIYSVNIANAIRDGAGE-YGYDVSLFETVAI----PVSDWG--------PTLAKLRADPPAVIVV 225 (419)
T ss_dssp CCCSSSEEEEEEC-SSHHHHHHHHHHHHHGGG-GTCEEEEEEECCS----SCSCCH--------HHHHHHHHSCCSEEEE
T ss_pred ccCCCCEEEEEEc-CcchhHHHHHHHHHHHHH-cCCeEEEEecCCC----CCccHH--------HHHHHHHhcCCCEEEE
Confidence 5546689999984 566666777777778765 5777765432211 111111 112222 357898888
Q ss_pred EeCch----HHHHHHHhcCCCCCcEEE
Q 009486 293 LGGDG----TVLWAASIFKGPVPPIVP 315 (533)
Q Consensus 293 LGGDG----TlL~aar~~~~~~~PILG 315 (533)
.|-.+ .+++.++... ...|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~g-~~~~~~~ 251 (419)
T 3h5l_A 226 THFYPQDQALFMNQFMTDP-TNSLVYL 251 (419)
T ss_dssp CCCCHHHHHHHHHHHTTSC-CSCEEEE
T ss_pred ccccCchHHHHHHHHHHcC-CCceEEe
Confidence 65333 3555555443 3556655
No 171
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.43 E-value=3.1e+02 Score=22.49 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=37.5
Q ss_pred CCccEEEE----EeCch-HHHHHHHhc---CCCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHcC
Q 009486 285 TKVDLVVT----LGGDG-TVLWAASIF---KGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRG 342 (533)
Q Consensus 285 ~~~DlVIv----LGGDG-TlL~aar~~---~~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~G 342 (533)
..+|+||+ =|+|| .+++..|.. ....+||+-+. .|-.+||. ++.++++.+.|.++..+
T Consensus 57 ~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 57 EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 45898887 36777 455666532 12457887765 35667765 48888888888887654
No 172
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.41 E-value=1.5e+02 Score=24.01 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=38.8
Q ss_pred CccEEEE---E-eCchH-HHHHHHhcCCCCCcEEEEe-------------CCCCccCc-cCCcchHHHHHHHHHcCCce
Q 009486 286 KVDLVVT---L-GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 286 ~~DlVIv---L-GGDGT-lL~aar~~~~~~~PILGIN-------------~G~LGFLt-~~~~ed~~~~L~~ll~G~y~ 345 (533)
.+|+||+ + |.||. +++..+.. ...+||+-+. .|-.|||. +++++++...|..++.+...
T Consensus 49 ~~dlvilD~~lp~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTGLEVLAEIRKK-HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHH-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 4788886 2 55773 56666653 3467887764 46678865 48888999999998887543
No 173
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.32 E-value=3e+02 Score=22.27 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCccEEEE----EeCch-HHHHHHHhc-CCCCCcEEEEe-------------CCCCccCcc-C-CcchHHHHHHHHHc
Q 009486 285 TKVDLVVT----LGGDG-TVLWAASIF-KGPVPPIVPFS-------------LGSLGFMTP-F-HSEHYKDYLDSVLR 341 (533)
Q Consensus 285 ~~~DlVIv----LGGDG-TlL~aar~~-~~~~~PILGIN-------------~G~LGFLt~-~-~~ed~~~~L~~ll~ 341 (533)
..+|+||+ -|+|| .+++..+.. ....+||+-+. .|-.+||.. + +++++...|..+++
T Consensus 50 ~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 50 AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 35788887 24455 355566652 23568888765 466777654 6 77888888777764
No 174
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.31 E-value=1.9e+02 Score=26.35 Aligned_cols=105 Identities=12% Similarity=-0.055 Sum_probs=56.3
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 009486 221 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 298 (533)
Q Consensus 221 VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGGDGT 298 (533)
|||+.. ..++-...+...+.+.+.+ .|+++.+...-.. .... ...+.. ...++|.||+.+.+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiI~~~~~~~ 67 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLE-QRYDLALFPILSL-ARLK------------RYLENTTLAYLTDGLILASYDLT 67 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGG-GTCEEEECCCCSC-CCCC---------------------CCCSEEEEESCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCc-hhhH------------HHHHHHHHhCCCCEEEEecCCCC
Confidence 666664 5677777777888888865 5777776321100 0000 000111 2357999999998765
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCccCccCCcchHH---HHHHHHHc
Q 009486 299 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 299 lL~aar~~~~~~~PILGIN~G~LGFLt~~~~ed~~---~~L~~ll~ 341 (533)
- ...+.+...++|++-++...-+ +.-+..++.. .+.+.+.+
T Consensus 68 ~-~~~~~~~~~~iPvV~~~~~~~~-~~~V~~d~~~~~~~a~~~L~~ 111 (276)
T 2h0a_A 68 E-RFEEGRLPTERPVVLVDAQNPR-YDSVYLDNRLGGRLAGAYLAR 111 (276)
T ss_dssp -------CCSCSSCEEEESSCCTT-SEEEEECSHHHHHHHHHHHTT
T ss_pred H-HHHHHHhhcCCCEEEEeccCCC-CCEEEEccHHHHHHHHHHHHH
Confidence 2 3344555678999999865433 3334445443 44555554
No 175
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.29 E-value=1.4e+02 Score=24.77 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=39.5
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcCCce
Q 009486 285 TKVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 345 (533)
Q Consensus 285 ~~~DlVIv----LGGDG-TlL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G~y~ 345 (533)
..+|+||+ -+.|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.|...
T Consensus 49 ~~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAEAIDGLVRLKRF-DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp CCCSEEEECC------CHHHHHHHHHH-CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEeCCCCCCchHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 35788886 24455 355555554 3467887653 467788665 7888999999999988654
Q ss_pred E
Q 009486 346 I 346 (533)
Q Consensus 346 i 346 (533)
+
T Consensus 128 ~ 128 (154)
T 2qsj_A 128 L 128 (154)
T ss_dssp C
T ss_pred c
Confidence 3
No 176
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=23.25 E-value=47 Score=34.13 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHHhhhcCCccccc--ccccchHHHhhhCCCccEEEEEe
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFV--QTWKDEKEILLLHTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~-~gi~V~ve~~~a~~l~~~~~~~~~i--~~~~~~~~~~~~~~~~DlVIvLG 294 (533)
+++++++....-. ..-+.+++++|+++ +.+.+. .++.| .+..--....++...+|++|++|
T Consensus 170 ~~kv~~vsQTT~s--~~~~~~iv~~L~~r~p~i~~~--------------~~ntIC~AT~~RQ~av~~lA~~vD~miVVG 233 (328)
T 3szu_A 170 EEKLSFMTQTTLS--VDDTSDVIDALRKRFPKIVGP--------------RKDDICYATTNRQEAVRALAEQAEVVLVVG 233 (328)
T ss_dssp TTSEEEEECTTSC--HHHHHHHHHHHHHHCTTCBCC--------------SSCSCCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCeEEEEEecCCc--HHHHHHHHHHHHHhCcccccC--------------CCCCcCHHHHHHHHHHHHHHHhCCEEEEeC
Confidence 5789999987654 45578899999763 222110 01111 11111234556778899999999
Q ss_pred Cc
Q 009486 295 GD 296 (533)
Q Consensus 295 GD 296 (533)
|-
T Consensus 234 g~ 235 (328)
T 3szu_A 234 SK 235 (328)
T ss_dssp CT
T ss_pred CC
Confidence 94
No 177
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.07 E-value=2.9e+02 Score=22.11 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=55.9
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE--
Q 009486 216 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL-- 293 (533)
Q Consensus 216 ~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL-- 293 (533)
..+.+|+||- +++.. ...+...|.. .|++|..-.+....+. .+. ...+|+||+=
T Consensus 5 ~~~~~iLivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlii~d~~ 60 (142)
T 3cg4_A 5 EHKGDVMIVD--DDAHV---RIAVKTILSD-AGFHIISADSGGQCID----------------LLK--KGFSGVVLLDIM 60 (142)
T ss_dssp -CCCEEEEEC--SCHHH---HHHHHHHHHH-TTCEEEEESSHHHHHH----------------HHH--TCCCEEEEEESC
T ss_pred CCCCeEEEEc--CCHHH---HHHHHHHHHH-CCeEEEEeCCHHHHHH----------------HHH--hcCCCEEEEeCC
Confidence 3466788885 34433 3455556654 4677654333222111 011 2347888872
Q ss_pred --eCch-HHHHHHHhc-CCCCCcEEEEeC-------------CCCccCc-cCCcchHHHHHHHHHc
Q 009486 294 --GGDG-TVLWAASIF-KGPVPPIVPFSL-------------GSLGFMT-PFHSEHYKDYLDSVLR 341 (533)
Q Consensus 294 --GGDG-TlL~aar~~-~~~~~PILGIN~-------------G~LGFLt-~~~~ed~~~~L~~ll~ 341 (533)
|.|| .+++..+.. ....+||+-+.- |-.+||. +++++++...|..++.
T Consensus 61 l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 61 MPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4466 355555552 235678877653 3345554 4777888888877764
No 178
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.02 E-value=1.5e+02 Score=27.54 Aligned_cols=85 Identities=14% Similarity=-0.052 Sum_probs=50.2
Q ss_pred CCEEEEEEcC-----CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEE
Q 009486 218 PQTVVILTKP-----NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVV 291 (533)
Q Consensus 218 pk~VlIV~K~-----~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVI 291 (533)
.++||++... .++-...+...+.+.+.+ .|+.+.+-..-.. . . . ....+.. ...++|-||
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~------~--~---~--~~~~~~~l~~~~vdgiI 69 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VNYFVLPFPFSED------R--S---Q--IDIYRDLIRSGNVDGFV 69 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TTCEEEECCCCSS------T--T---C--CHHHHHHHHTTCCSEEE
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cCCEEEEEeCCCc------h--H---H--HHHHHHHHHcCCCCEEE
Confidence 4578888754 566677777888888876 5787766321000 0 0 0 0011111 246799999
Q ss_pred EEeCchH--HHHHHHhcCCCCCcEEEEeCC
Q 009486 292 TLGGDGT--VLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 292 vLGGDGT--lL~aar~~~~~~~PILGIN~G 319 (533)
+.+.|.+ .+..+. ..++|++-++..
T Consensus 70 i~~~~~~~~~~~~l~---~~~iPvV~~~~~ 96 (287)
T 3bbl_A 70 LSSINYNDPRVQFLL---KQKFPFVAFGRS 96 (287)
T ss_dssp ECSCCTTCHHHHHHH---HTTCCEEEESCC
T ss_pred EeecCCCcHHHHHHH---hcCCCEEEECCc
Confidence 9887643 443332 357899998764
No 179
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=22.83 E-value=85 Score=35.69 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=55.7
Q ss_pred ecCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEE
Q 009486 214 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVV 291 (533)
Q Consensus 214 w~~~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVI 291 (533)
|....++|+|+.-..-++.. +..+++.|++ .|++|.+ .+... .+... .... +. .+..+.+. ...+|.||
T Consensus 596 ~ti~grKVaILlaDGfEe~E--l~~pvdaLr~-AG~~V~vVS~~~g-~V~gs-~G~~-V~---aD~t~~~v~s~~fDALV 666 (753)
T 3ttv_A 596 GDVKGRVVAILLNDEVRSAD--LLAILKALKA-KGVHAKLLYSRMG-EVTAD-DGTV-LP---IAATFAGAPSLTVDAVI 666 (753)
T ss_dssp CCCTTCEEEEECCTTCCHHH--HHHHHHHHHH-HTCEEEEEESSSS-EEECT-TSCE-EE---CCEETTTSCGGGCSEEE
T ss_pred CCCCCCEEEEEecCCCCHHH--HHHHHHHHHH-CCCEEEEEEcCCC-eEEeC-CCCE-Ee---cccchhhCCCcCCCEEE
Confidence 55667899999877665442 5667777865 4666644 22211 11110 0000 00 01111111 23589999
Q ss_pred EEeC-------chHHHHHHHhcCCCCCcEEEEeCC
Q 009486 292 TLGG-------DGTVLWAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 292 vLGG-------DGTlL~aar~~~~~~~PILGIN~G 319 (533)
+.|| |+.++..++.+.....||.+|-.|
T Consensus 667 VPGGg~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~G 701 (753)
T 3ttv_A 667 VPCGNIADIADNGDANYYLMEAYKHLKPIALAGDA 701 (753)
T ss_dssp ECCSCGGGTTTCHHHHHHHHHHHHTTCCEEEEGGG
T ss_pred ECCCChHHhhhCHHHHHHHHHHHhcCCeEEEECch
Confidence 9999 334667777777788999998765
No 180
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.76 E-value=3.4e+02 Score=25.24 Aligned_cols=110 Identities=7% Similarity=0.015 Sum_probs=60.9
Q ss_pred CCCEEEEEEc------CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccE
Q 009486 217 PPQTVVILTK------PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDL 289 (533)
Q Consensus 217 ~pk~VlIV~K------~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~Dl 289 (533)
+.++|||+.. ..++-...+...+.+.+.+ .|+.+.+...-..... + ..-+. -....+|-
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~-~------------~~~~~~l~~~~vdG 71 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ-HGYGTQTTVSNNMNDL-M------------DEVYKMIKQRMVDA 71 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT-TTCEEEECCCCSHHHH-H------------HHHHHHHHTTCCSE
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH-CCCEEEEEcCCCChHH-H------------HHHHHHHHhCCcCE
Confidence 4568999972 3566677777888888865 6888776432111000 0 00011 12467999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCcc---CccCCcchH---HHHHHHHHc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF---MTPFHSEHY---KDYLDSVLR 341 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~G~LGF---Lt~~~~ed~---~~~L~~ll~ 341 (533)
||+++.+.+- .....+...++|++-|+...-+. +.-+..++. ..+.+.+++
T Consensus 72 iI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 128 (295)
T 3hcw_A 72 FILLYSKEND-PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIE 128 (295)
T ss_dssp EEESCCCTTC-HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHH
T ss_pred EEEcCcccCh-HHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHH
Confidence 9998876432 22233334578999887643322 233444443 345555554
No 181
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=22.70 E-value=1.9e+02 Score=27.35 Aligned_cols=84 Identities=13% Similarity=0.016 Sum_probs=46.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 295 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~DlVIvLGG 295 (533)
..++|++|. .+..........+.+.|.+ .|+++..+..+.. ....+. ..+..+ ..++|.|++.+.
T Consensus 134 g~~~ia~i~-~~~~~~~~~~~~~~~~l~~-~g~~v~~~~~~~~----~~~~~~--------~~~~~l~~~~~dav~~~~~ 199 (362)
T 3snr_A 134 NVKTVGYIG-YSDSYGDLWFNDLKKQGEA-MGLKIVGEERFAR----PDTSVA--------GQALKLVAANPDAILVGAS 199 (362)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEEEEEEECT----TCSCCH--------HHHHHHHHHCCSEEEEECC
T ss_pred CCCEEEEEe-cCchHHHHHHHHHHHHHHH-cCCEEEEEeecCC----CCCCHH--------HHHHHHHhcCCCEEEEecC
Confidence 458899996 4566666777778888876 5777653322111 011111 111111 246899988875
Q ss_pred chHHH---HHHHhcCCCCCcEEE
Q 009486 296 DGTVL---WAASIFKGPVPPIVP 315 (533)
Q Consensus 296 DGTlL---~aar~~~~~~~PILG 315 (533)
|...+ ++++.. +..+|+++
T Consensus 200 ~~~a~~~~~~~~~~-g~~~p~i~ 221 (362)
T 3snr_A 200 GTAAALPQTTLRER-GYNGLIYQ 221 (362)
T ss_dssp HHHHHHHHHHHHHT-TCCSEEEE
T ss_pred cchHHHHHHHHHHc-CCCccEEe
Confidence 65544 444443 45677755
No 182
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=21.89 E-value=3.3e+02 Score=22.34 Aligned_cols=101 Identities=13% Similarity=0.188 Sum_probs=57.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEE----
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT---- 292 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIv---- 292 (533)
.+.+|+||- +++.. ...+..+|.+ .|+.|..-.+..+.+. .+. ...+|+||+
T Consensus 13 ~~~~ILivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlvi~D~~l 68 (153)
T 3hv2_A 13 RRPEILLVD--SQEVI---LQRLQQLLSP-LPYTLHFARDATQALQ----------------LLA--SREVDLVISAAHL 68 (153)
T ss_dssp SCCEEEEEC--SCHHH---HHHHHHHHTT-SSCEEEEESSHHHHHH----------------HHH--HSCCSEEEEESCC
T ss_pred CCceEEEEC--CCHHH---HHHHHHHhcc-cCcEEEEECCHHHHHH----------------HHH--cCCCCEEEEeCCC
Confidence 356788885 33333 3455666654 4677665433322211 011 135788887
Q ss_pred EeCchH-HHHHHHhcCCCCCcEEEEe-------------CC-CCccCcc-CCcchHHHHHHHHHcC
Q 009486 293 LGGDGT-VLWAASIFKGPVPPIVPFS-------------LG-SLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 293 LGGDGT-lL~aar~~~~~~~PILGIN-------------~G-~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
-|+||. +++..+.. ...+||+-+. .| -.+||.. +.++++...|..++++
T Consensus 69 ~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 69 PQMDGPTLLARIHQQ-YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SSSCHHHHHHHHHHH-CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHhH-CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 255663 44555543 3467887654 35 5667654 7788888888887754
No 183
>1sgh_B Ezrin-radixin-moesin binding phosphoprotein 50; FERM-peptide complex, structural protein; 3.50A {Homo sapiens} SCOP: j.117.1.1
Probab=21.86 E-value=30 Score=25.00 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 009486 82 QAEAAEWKRRFEL 94 (533)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (533)
.|..-.|.+||||
T Consensus 23 rapqMDw~KK~Ei 35 (39)
T 1sgh_B 23 RAPQMDWSKKNEL 35 (39)
T ss_pred cCCcccHHHHHHH
Confidence 4466789999997
No 184
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.64 E-value=2.7e+02 Score=25.73 Aligned_cols=88 Identities=19% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 009486 218 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 294 (533)
Q Consensus 218 pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~v-e~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLG 294 (533)
..+|+++.. ..++-...+..-+.+.+.+ .|+++.+ ...-... ... ...+.. +..++|.||+.+
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiii~~ 69 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKE-FNLNASQVGPSSTDA-PQQ------------VKIIEDLIARKVDAITIVP 69 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHH-TTEEEEEECCSSSCH-HHH------------HHHHHHHHHTTCSEEEECC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHH-cCCEEEEECCCCCCH-HHH------------HHHHHHHHHcCCCEEEEec
Confidence 467899875 3556556666777777765 5888753 3210000 000 001111 235799999998
Q ss_pred CchHHH-HHHHhcCCCCCcEEEEeCC
Q 009486 295 GDGTVL-WAASIFKGPVPPIVPFSLG 319 (533)
Q Consensus 295 GDGTlL-~aar~~~~~~~PILGIN~G 319 (533)
.|..-+ ...+.+...++|++-++..
T Consensus 70 ~~~~~~~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 70 NDANVLEPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred CChHHHHHHHHHHHHCCCeEEEEecC
Confidence 886543 3344454567899998864
No 185
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=21.26 E-value=16 Score=33.47 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=44.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 218 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 218 pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
+++|+|+.-...... ..++++|.+ .|.++.+-+. . +...++|.+|.-||-+
T Consensus 2 ~~~i~il~~~~~~~~----~~~~~~l~~-~g~~~~~~~~--------------------~----~~~~~~d~lil~Gg~~ 52 (213)
T 3d54_D 2 KPRACVVVYPGSNCD----RDAYHALEI-NGFEPSYVGL--------------------D----DKLDDYELIILPGGFS 52 (213)
T ss_dssp CCEEEEECCTTEEEH----HHHHHHHHT-TTCEEEEECT--------------------T----CCCSSCSEEEECEECG
T ss_pred CcEEEEEEcCCCCcc----HHHHHHHHH-CCCEEEEEec--------------------C----CCcccCCEEEECCCCc
Confidence 467898876654321 245778865 4555543210 0 0134689999999855
Q ss_pred H--------------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 298 T--------------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 298 T--------------lL~aar~~~~~~~PILGIN~G~ 320 (533)
+ ++...+.+...+.||+||-.|.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~ 89 (213)
T 3d54_D 53 YGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGF 89 (213)
T ss_dssp GGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHH
T ss_pred hhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHH
Confidence 3 3444454444578999998875
No 186
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.98 E-value=3.2e+02 Score=25.91 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 218 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
..+||++.. ..++-...+..-+.+.+.+ .|+.+.+...-... ..+ ...+.. ....+|-+|+.+.
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YKYNIILSNSDQNQ-DKE------------LHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HTCEEEEEECCSHH-HHH------------HHHHHHTSCCSSCCEEECCS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCCEEEEEeCCCCh-HHH------------HHHHHHHHhCCCcEEEEecC
Confidence 467888875 4566667777778888865 46776653211000 000 011112 2357999999987
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCCc-cCccCCcchHH---HHHHHHHc
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~LG-FLt~~~~ed~~---~~L~~ll~ 341 (533)
+.+- .....+...++|++-++...-+ .+.-+..++.. .+.+.+++
T Consensus 126 ~~~~-~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 174 (332)
T 2hsg_A 126 NVTE-EHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLID 174 (332)
T ss_dssp SCCH-HHHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHT
T ss_pred CCCH-HHHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 6542 2333444567899998764322 12234445543 44555554
No 187
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.88 E-value=2.8e+02 Score=25.82 Aligned_cols=109 Identities=19% Similarity=0.072 Sum_probs=57.4
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 009486 218 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 295 (533)
Q Consensus 218 pk~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~DlVIvLGG 295 (533)
.++|||+.. ..++-...+..-+.+.+.+ .|..+.+-..-... ..+ ...+.. ...++|-||+.+.
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YKYNIILSNSDQNM-EKE------------LHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cCCEEEEEeCCCCH-HHH------------HHHHHHHHhCCCCEEEEecC
Confidence 357888875 4566666777777888865 57776653211000 000 000111 2367999999887
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCCc-cCccCCcchHH---HHHHHHHc
Q 009486 296 DGTVLWAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 296 DGTlL~aar~~~~~~~PILGIN~G~LG-FLt~~~~ed~~---~~L~~ll~ 341 (533)
+.+- .....+...++|++-++...-+ -+.-+..++.. .+.+.+++
T Consensus 82 ~~~~-~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 130 (289)
T 2fep_A 82 NITD-EHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVD 130 (289)
T ss_dssp CCCH-HHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 5431 1222233457899998864222 12234444433 44555554
No 188
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=20.87 E-value=27 Score=24.38 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=20.4
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 009486 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (533)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (533)
++++.|++-+|..-.++|+++||+
T Consensus 1 HaDGtFTsd~s~~l~~~aak~fl~ 24 (33)
T 2l63_A 1 HADGSFSDEMNTILDNLAARDFIN 24 (33)
T ss_dssp CCCSHHHHGGGHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHH
Confidence 367889889999999999999974
No 189
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=20.84 E-value=57 Score=23.92 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.3
Q ss_pred CCCCccccccccccHHHHHHHhh
Q 009486 24 SENGFGDSLSLLQSEKAVQEILQ 46 (533)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~ 46 (533)
+++.|++-+|..-.++|+++|++
T Consensus 2 sdGTFTsDySk~Ld~~~akdFv~ 24 (42)
T 2b4n_A 2 AEGTFISDYSIAMDKIHQQDFVN 24 (42)
T ss_dssp CCCTTTTCCCTTHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999953
No 190
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.74 E-value=2.4e+02 Score=26.47 Aligned_cols=110 Identities=6% Similarity=-0.062 Sum_probs=60.0
Q ss_pred CCCEEEEEEcC------CChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHh-hhCCCccE
Q 009486 217 PPQTVVILTKP------NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDL 289 (533)
Q Consensus 217 ~pk~VlIV~K~------~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~Dl 289 (533)
+.++|||+... .++-...+...+.+.+.+ .|+.+.+-..-..... + ..-+. -...++|-
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~-~------------~~~~~~l~~~~vdg 86 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RGYSTRMTVSENSGDL-Y------------HEVKTMIQSKSVDG 86 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HTCEEEECCCSSHHHH-H------------HHHHHHHHTTCCSE
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CCCEEEEEeCCCChHH-H------------HHHHHHHHhCCCCE
Confidence 34689998765 456666777777778766 4777776432111000 0 00011 12467999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEeCCCCc-cCccCCcchHH---HHHHHHHc
Q 009486 290 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHYK---DYLDSVLR 341 (533)
Q Consensus 290 VIvLGGDGTlL~aar~~~~~~~PILGIN~G~LG-FLt~~~~ed~~---~~L~~ll~ 341 (533)
||+++.+.+- .....+...++|++-|+...-+ -+.-+..++.. .+.+.+++
T Consensus 87 iIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 141 (305)
T 3huu_A 87 FILLYSLKDD-PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYH 141 (305)
T ss_dssp EEESSCBTTC-HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHH
T ss_pred EEEeCCcCCc-HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHH
Confidence 9999876432 2223333457899988865311 12334444433 45555554
No 191
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=20.54 E-value=27 Score=31.91 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCccEEEEEe-Cc-hH---------HHHHHHhcCCCCCcEEEEeCCC
Q 009486 285 TKVDLVVTLG-GD-GT---------VLWAASIFKGPVPPIVPFSLGS 320 (533)
Q Consensus 285 ~~~DlVIvLG-GD-GT---------lL~aar~~~~~~~PILGIN~G~ 320 (533)
.++|.+|.-| || ++ ++...+.+...+.|||||-.|.
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~ 87 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGM 87 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhH
Confidence 4579888877 34 22 3344454434578999999884
No 192
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=20.46 E-value=1.1e+02 Score=20.94 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHH-hhhHhHH
Q 009486 59 EFSEALRTVAKALRRAA-EGKAAAQ 82 (533)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (533)
....-|.++||-|+..| |-||-||
T Consensus 6 aiaqelkaiakelkaiawedkaiaq 30 (35)
T 3r46_A 6 AIAQELKAIAKELKAIAWEDKAIAQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHc
Confidence 34455677777777655 5666665
No 193
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.26 E-value=3.6e+02 Score=22.11 Aligned_cols=101 Identities=13% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEE---
Q 009486 217 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL--- 293 (533)
Q Consensus 217 ~pk~VlIV~K~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvL--- 293 (533)
++.+|+||- +++.. ...+...|.. .|+.|..-.+....+.. + ....+|+||+=
T Consensus 2 ~~~~ILivd--d~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~~-------l-----------~~~~~dliild~~l 57 (155)
T 1qkk_A 2 AAPSVFLID--DDRDL---RKAMQQTLEL-AGFTVSSFASATEALAG-------L-----------SADFAGIVISDIRM 57 (155)
T ss_dssp --CEEEEEC--SCHHH---HHHHHHHHHH-TTCEEEEESCHHHHHHT-------C-----------CTTCCSEEEEESCC
T ss_pred CCCEEEEEe--CCHHH---HHHHHHHHHH-cCcEEEEECCHHHHHHH-------H-----------HhCCCCEEEEeCCC
Confidence 345788875 33433 3455556654 57777654332222110 0 01347888762
Q ss_pred -eCchH-HHHHHHhcCCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcC
Q 009486 294 -GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 294 -GGDGT-lL~aar~~~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
|.||. +++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.+
T Consensus 58 ~~~~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 58 PGMDGLALFRKILAL-DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp SSSCHHHHHHHHHHH-CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh-CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 34553 45555544 3467887764 466777654 7788888888887764
No 194
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.19 E-value=3.5e+02 Score=21.87 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=36.7
Q ss_pred CccEEEEE----eCchH-HHHHHHhc-CCCCCcEEEEe-------------CCCCccCcc-CCcchHHHHHHHHHcC
Q 009486 286 KVDLVVTL----GGDGT-VLWAASIF-KGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRG 342 (533)
Q Consensus 286 ~~DlVIvL----GGDGT-lL~aar~~-~~~~~PILGIN-------------~G~LGFLt~-~~~ed~~~~L~~ll~G 342 (533)
.+|+||+= +.||- +++..+.. ....+||+-+. .|-.+||.. ++++++...|..++..
T Consensus 52 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 47888872 44553 45555542 23567887764 366777654 7788888888887753
No 195
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.02 E-value=4.2e+02 Score=24.27 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=63.4
Q ss_pred CEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHHhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 009486 219 QTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 297 (533)
Q Consensus 219 k~VlIV~K-~~~~~~~~~~~el~~~L~e~~gi~V~ve~~~a~~l~~~~~~~~~i~~~~~~~~~~~~~~~~DlVIvLGGDG 297 (533)
.+|+++.- +..+....-..-+.+.|.+++++++....... ++.-.....-..+-....++|.|++. .|.
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~ 205 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGN---------YDPVTSERVMRQVIDSGIPFDAVYCH-NDD 205 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECT---------TCHHHHHHHHHHHHHTTCCCSEEEES-SHH
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCC---------CCHHHHHHHHHHHHHhCCCCCEEEEC-Cch
Confidence 48999974 45555656666677777664477764321000 00000000001111223567877764 555
Q ss_pred HH---HHHHHhcCCCCCcEEEEeCCCC-------c-cCccCC--cchHH----HHHHHHHcCCceEEEEeeeeEEEe
Q 009486 298 TV---LWAASIFKGPVPPIVPFSLGSL-------G-FMTPFH--SEHYK----DYLDSVLRGPISITLRNRLQCHVI 357 (533)
Q Consensus 298 Tl---L~aar~~~~~~~PILGIN~G~L-------G-FLt~~~--~ed~~----~~L~~ll~G~y~ie~R~rL~v~V~ 357 (533)
.- +++++...-.++.|+|++--.. | .|+.+. +.++- +.|.+.++|+-. ..+..+.+++.
T Consensus 206 ~a~g~~~al~~~g~~di~vig~d~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~i~g~~~-~~~~~~~~~lv 281 (293)
T 3l6u_A 206 IAMGVLEALKKAKISGKIVVGIDGNRAILEAVDMKSMDATVVQSAEEMMKVAFSALKLHTKNKKI-PDRFYTYSYLY 281 (293)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTTSSCEEEECCHHHHHHHHHHHHHHHHTTCCC-CSEEEECCEEE
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHcCCccEEEeCCHHHHHHHHHHHHHHHHcCCCC-CceeecccEee
Confidence 54 4455554433789999986432 2 355544 33322 234445566532 34455555554
Done!