BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009487
(533 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana
GN=APC2 PE=1 SV=1
Length = 865
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/528 (68%), Positives = 417/528 (78%), Gaps = 19/528 (3%)
Query: 1 MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLC 60
ME S CNL ILE L+D+++QEI ESY+GF T SL+ G D V EFV+HV LC
Sbjct: 1 MEALGSSDCNLEILETLSDDAIQEITESYDGFFTTVESLIAGTGDSLVEDEFVSHVYCLC 60
Query: 61 KHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKA 120
K+GL SL HFLRSLE+ FE+ S FW+HFD YS+ K Y +E+ VLCKA
Sbjct: 61 KYGLDSLVRDHFLRSLEQAFEKGGASSFWQHFDAYSE------KKHHNYGEEIQIVLCKA 114
Query: 121 LEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLP 179
LEEI +E QY EKCL ++VHA++S ++ S + + D+E VHLF+++Q M+SS LM +LP
Sbjct: 115 LEEISIEKQYHEKCLSIVVHALQSFKEQSSDDRQNSDTERVHLFSRFQSMLSSTLMTTLP 174
Query: 180 PHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHG 239
HFPE+L+WYFK RLEELS IMDG DG + Q+ D MDLDEK + + GEMD+D+ + G
Sbjct: 175 QHFPEILHWYFKERLEELSAIMDG---DGIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQG 231
Query: 240 KFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPI 299
K KLVK+IGKVV DLR++GFTSM ENAYASAIF LLKAKVH+LAG+DYR+SVLE I
Sbjct: 232 KRLGHDKLVKNIGKVVRDLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESI 291
Query: 300 KAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTH-----NPSEGLVR 354
K WIQ VPLQFLNALL+YLG+S SY + ++GL SPLA CCP PSEG+VR
Sbjct: 292 KEWIQTVPLQFLNALLSYLGDSVSYGTTSSGLTSPLA----CCPSPSFSRVVTPSEGIVR 347
Query: 355 WRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALK 414
W+LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFIS+LK
Sbjct: 348 WKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLK 407
Query: 415 YRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 474
YRLLTAGASTNDILHQYVSTIKALR IDP GVFLEAVGEPIRDYLRGRKDTIKCIVTMLT
Sbjct: 408 YRLLTAGASTNDILHQYVSTIKALRAIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 467
Query: 475 DGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINA 522
DG+GGN NGSGN GDSLLEEL RDEE+QEN+G DD F+ DDKQAWINA
Sbjct: 468 DGSGGNANGSGNPGDSLLEELMRDEESQENVGFDDDFHTDDKQAWINA 515
>sp|Q8BZQ7|ANC2_MOUSE Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1
SV=2
Length = 837
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/475 (27%), Positives = 205/475 (43%), Gaps = 50/475 (10%)
Query: 50 KEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIY 109
+E V L HGL S+ F+ L+ + ++FW N +
Sbjct: 68 EELRAAVEVLRGHGLHSVLEEWFVEVLQNDLQGNIATEFW--------------NAIALR 113
Query: 110 DDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLM 169
++ V E C L + E L +H++E + G + L K M
Sbjct: 114 ENSVDEPQCLGL--LLDAFGLLESRLDPYLHSLELLEKWTRLGLLMGAGAQGLREKVHTM 171
Query: 170 VSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGE 229
+ VL S P F EM+ + GR + + E G D + + ++D ++
Sbjct: 172 LRGVLFFSTPRTFQEMVQRLY-GRFLRVYMQSKRKGEGGTDPELEGELDSRYARRRYYRL 230
Query: 230 MDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLL----KAKVHN 285
+ G ++ + + + + L S+ E A A+ + L + ++ +
Sbjct: 231 LQSPLCAGCGSDKQQCWCRQALEQFNQLSQVLHRLSLLERVCAEAVTTTLHQVTRERMED 290
Query: 286 LAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGT 345
+Y S L WI+ V + +LG+ D+PT P +
Sbjct: 291 RCRGEYERSFLREFHKWIERV--------VGWLGKVFLQDNPTR-------------PTS 329
Query: 346 HNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKL 405
L RWR ++ F Y LRI +LF II D+P+S PAIEDLK CLE T Q +L
Sbjct: 330 PEAGNTLRRWRCHVQRFFYRIYATLRIEELFSIIRDFPDSRPAIEDLKYCLERTDQRQQL 389
Query: 406 VESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDT 465
+ S AL+ RLL G +T DI+ Y+S IKALR +DP+ V LE EPIR YLR R+DT
Sbjct: 390 LVSLKVALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRRYLRTREDT 449
Query: 466 IKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWI 520
++ IV LT G+ +G+G+ L EL++ + G D + + + W+
Sbjct: 450 VRQIVAGLT----GDSDGTGD----LAVELSKTDPACLETGQDSEDDSGEPEDWV 496
>sp|Q9UJX6|ANC2_HUMAN Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1
SV=1
Length = 822
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 31/271 (11%)
Query: 250 HIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQ 309
+ +V+H L L ++ A + + + + ++ + +Y S L WI+ V
Sbjct: 242 QLSQVLHRLSLL--ERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERV--- 296
Query: 310 FLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQD 369
+ +LG+ D P P + L RWR ++ F Y
Sbjct: 297 -----VGWLGKVFLQDGPAR-------------PASPEAGNTLRRWRCHVQRFFYRIYAS 338
Query: 370 LRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILH 429
LRI +LF I+ D+P+S PAIEDLK CLE T Q +L+ S +AL+ RLL G +T DI+
Sbjct: 339 LRIEELFSIVRDFPDSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIIT 398
Query: 430 QYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGD 489
Y+S IKALR +DP+ V LE EPIR YLR R+DT++ IV LT G+ +G+G+
Sbjct: 399 LYISAIKALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLT----GDSDGTGD--- 451
Query: 490 SLLEELNRDEENQENIGVDDGFNIDDKQAWI 520
L EL++ + G D + + + W+
Sbjct: 452 -LAVELSKTDPASLETGQDSEDDSGEPEDWV 481
>sp|Q551S9|APC2_DICDI Anaphase-promoting complex subunit 2 OS=Dictyostelium discoideum
GN=anapc2 PE=3 SV=1
Length = 907
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 135/279 (48%), Gaps = 22/279 (7%)
Query: 258 LRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALL-- 315
L+ L F ++E + +F + + + S L+ I W V ++L +L
Sbjct: 259 LQDLNFIVISEEIFTQILFKKVFEYIETRCKGVFEKSFLKSILEWADQVIFKWLAMILLS 318
Query: 316 AYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKL 375
+ + + N + +W+ RLE+ YE RI++L
Sbjct: 319 STTTTKINNYNDIINNNDDDNDDDDDDENKENSLKIFNQWKKRLEFSIYENYSQQRISEL 378
Query: 376 FEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTI 435
F++IV YP+S P++EDL C + ++ + L RLL GA+T+DI+ QY+STI
Sbjct: 379 FDMIVQYPDSLPSLEDLSICFQKIPIEKTMITNLKRVLHNRLLHPGANTSDIITQYISTI 438
Query: 436 KALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGG------NPNGSGNAGD 489
A+ IDP+G+ +E VG+PIR+YL R+DTI+CI++ T+ + N + N GD
Sbjct: 439 HAMDIIDPSGMVMEKVGKPIREYLSQREDTIRCIISSFTEESNEIYQELCNYDPQDNGGD 498
Query: 490 -----SLLEELNRDEENQENIGVDDGFN---IDDKQAWI 520
SLL N D + VD+G N IDD + WI
Sbjct: 499 DDSNNSLLAFGNCD------LYVDEGDNFSSIDDFKFWI 531
>sp|Q874R3|APC2_SCHPO Anaphase-promoting complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=apc2 PE=1 SV=1
Length = 681
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 357 LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYR 416
++L++ + L LR + +I++ YP S AIEDL+ Q L E+F+
Sbjct: 208 VQLDHLVSQILAHLRSDNILDIVLHYPNSLGAIEDLRLVARQKQQRQYLTETFVKDCTSS 267
Query: 417 LLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTML-TD 475
+LTA + ++ IL YVSTI+ +DP GV L+ +PIR +L R+D KC+V++L D
Sbjct: 268 ILTASSDSSYILLFYVSTIRCFVALDPPGVLLDKAAKPIRSFLNEREDAYKCLVSLLFVD 327
Query: 476 GTGG 479
G G
Sbjct: 328 GEKG 331
>sp|P34514|APC2_CAEEL Anaphase-promoting complex subunit 2 OS=Caenorhabditis elegans
GN=apc-2 PE=1 SV=3
Length = 731
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 378 IIVDYPESSPAIEDLKQCLEYTGQHSKL--VESFISALKYRLLTAGASTNDILHQYVSTI 435
I VD+P ++ +K CL T H ++ I + +LL A T DIL Y + +
Sbjct: 234 IAVDFPVKFRSLITMKYCLLRTNNHGRVDFTNYLIDQVNTKLLVASVDTKDILKAYAACV 293
Query: 436 KALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEEL 495
++LR +D + V + V IR+YL+ R DT++ I++ +T + +
Sbjct: 294 ESLREMDNSCVVMHKVCGVIREYLKRRPDTVQQIISYITSNKKNELEKDMSLQSKTVRSA 353
Query: 496 NRDEENQENIGVDDGF 511
DEE E GV+D F
Sbjct: 354 MMDEE--ELKGVNDDF 367
>sp|Q12440|APC2_YEAST Anaphase-promoting complex subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC2 PE=1 SV=1
Length = 853
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 370 LRIAKLFEI-IVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDIL 428
+R ++F+I ++ YP+S + +L++ ++ ++ +V +F+S K +L +T D L
Sbjct: 282 IRTNEIFDICVLAYPDSKVTLLELRKIMKDFKDYTNIVTTFLSDFKKYILNPSVTTVDAL 341
Query: 429 HQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD------GTGGNPN 482
+YV TIKA +DPTG L ++ ++ Y + RK + ++ + D N N
Sbjct: 342 LRYVKTIKAFLVLDPTGRCLHSITTFVKPYFQERKHLVNVLLYAMLDLPEEELKEKINFN 401
Query: 483 GSGNAGDSLLEELNRDEENQE 503
A SL++ L+ + NQ+
Sbjct: 402 VDMKALLSLVDTLHDSDINQD 422
>sp|Q1XDD8|CH60_PORYE 60 kDa chaperonin, chloroplastic OS=Porphyra yezoensis GN=groL PE=3
SV=2
Length = 528
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 40 LNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEET-----FERTFVSKFWRHFDV 94
L+ G DI VGK + + + G+ SL G ++ E FE+ F+S ++
Sbjct: 149 LSSGNDIEVGKMIANAIEKVGREGVISLEEGKSTNTILEITEGMQFEKGFISPYF--VTD 206
Query: 95 YSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKP 154
++ VL++N +++ D+ ++ + L + +I + L ++ IE ++
Sbjct: 207 TERMEVLQENPFILFTDKKITLVQQELVPLLEQIAKTSRPLLIIAEDIEKEALATI---- 262
Query: 155 ILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDK 214
+ K + +++ V A P F + K LE++S + +G++ +
Sbjct: 263 -------VVNKLRGILNVV--AVRAPGFGD----RRKSLLEDMSILTNGQVITEDAGLSL 309
Query: 215 DDMDLDEKGKQR 226
D + LD GK R
Sbjct: 310 DTVQLDMLGKAR 321
>sp|A1SY74|GCSP_PSYIN Glycine dehydrogenase [decarboxylating] OS=Psychromonas ingrahamii
(strain 37) GN=gcvP PE=3 SV=1
Length = 966
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 356 RLRLEYFAYE----TLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFIS 411
R R E+F YE +++DL LF ++ YP ++ I+DL +E LV
Sbjct: 189 RTRAEFFGYEIISGSMEDLDNHDLFGALLQYPSTTGNIQDLTAIIEKAHAKKTLVSVASD 248
Query: 412 ALKYRLLTA 420
L LL A
Sbjct: 249 LLALTLLKA 257
>sp|P94427|GABT_BACSU Probable 4-aminobutyrate aminotransferase OS=Bacillus subtilis
(strain 168) GN=gabT PE=3 SV=1
Length = 436
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 17 LNDESVQE-IIESYNGF-----------CATTNSLLNGGRDIAVGKEFVTHVRSLCK-HG 63
++DES + +I+++N F C + G I K FV HV S CK HG
Sbjct: 187 MSDESYDDMVIQAFNDFFIASVAPETVACVVMEPVQGEGGFIIPSKRFVQHVASFCKEHG 246
Query: 64 LQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKN 104
+ +A ++ F RT HFDV + + K+
Sbjct: 247 IVFVAD-----EIQTGFARTGTYFAIEHFDVVPDLITVSKS 282
>sp|P18257|ACHN3_CARAU Neuronal acetylcholine receptor subunit non-alpha-3 OS=Carassius
auratus PE=2 SV=1
Length = 466
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 273 SAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLK 332
S I +L VH+ + Y P+ W++++ LQ L LL G ++ Y P L+
Sbjct: 313 SIIVTLFVINVHHRSSATY-----HPMAPWVKSLFLQRLPRLLCMRGHTDRYQYPDIELR 367
Query: 333 SPLASR 338
SP R
Sbjct: 368 SPELKR 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,372,296
Number of Sequences: 539616
Number of extensions: 9007407
Number of successful extensions: 27260
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 27219
Number of HSP's gapped (non-prelim): 43
length of query: 533
length of database: 191,569,459
effective HSP length: 122
effective length of query: 411
effective length of database: 125,736,307
effective search space: 51677622177
effective search space used: 51677622177
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)