Query 009487
Match_columns 533
No_of_seqs 161 out of 205
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 78.6 2.8 9.5E-05 47.2 6.7 95 362-466 257-351 (759)
2 4eoz_B Cullin-3, CUL-3; E3 ubi 15.4 2.7E+02 0.0094 27.9 6.9 65 23-88 11-76 (364)
3 4ap2_B Cullin-3, CUL-3; ubiqui 15.0 3E+02 0.01 28.3 7.2 65 23-88 28-93 (410)
4 1u84_A Hypothetical protein; s 14.9 2.6E+02 0.0089 23.5 5.4 53 20-81 11-63 (90)
5 1inz_A EPS15-interacting porte 12.8 3.7E+02 0.013 24.2 6.3 36 432-477 107-142 (148)
6 3fbi_A Mediator of RNA polymer 11.3 48 0.0016 27.7 -0.2 8 86-93 18-25 (84)
7 3c18_A Nucleotidyltransferase- 10.6 2.1E+02 0.0073 28.9 4.2 57 372-441 104-160 (290)
8 4a64_A Cullin-4B, CUL4B, CUL-4 8.6 5.5E+02 0.019 25.6 6.5 61 25-86 10-71 (354)
9 2ixm_A Serine/threonine-protei 8.5 1.4E+03 0.049 22.9 9.6 86 349-445 83-186 (303)
10 2oez_A UPF0289 protein VP2528; 8.3 1.1E+03 0.037 23.0 8.2 58 387-445 46-110 (247)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=78.55 E-value=2.8 Score=47.23 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHHhhcCchhHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHhHHHhh
Q 009487 362 FAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTI 441 (533)
Q Consensus 362 ~~~~~~~~lRi~elFdIIvdyPdS~pai~DLr~cL~~t~~r~~Lv~s~~~~~~~RLLhpGa~T~dIL~~YIstIkal~iL 441 (533)
.-|-.++..|+.|-++.+..|+++ .+...|..|+++.-...++..-+.+.|.. ||. +-.+.|+-..|.-..+.
T Consensus 257 ~~Yl~~~e~rl~eE~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~~-lL~-~~~~~dL~~mY~L~~rv---- 329 (759)
T 2hye_C 257 PEYLNHVSKRLEEEGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLDH-LLD-ENRVPDLAQMYQLFSRV---- 329 (759)
T ss_dssp HHHHHHHHHHHHHTHHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHHH-HHT-TTCHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHh-cCCHHHHHHHHHHHccC----
Confidence 447789999999999999999998 67899999988765433322222223433 554 44788888888665552
Q ss_pred CCCccchhhhcchhHHhhccCCChH
Q 009487 442 DPTGVFLEAVGEPIRDYLRGRKDTI 466 (533)
Q Consensus 442 DPsGvlL~~V~~PIr~YLr~R~DtV 466 (533)
| .-|+.++.+++.|++++...+
T Consensus 330 -~--~~l~~l~~~~~~~I~~~g~~i 351 (759)
T 2hye_C 330 -R--GGQQALLQHWSEYIKTFGTAI 351 (759)
T ss_dssp -T--THHHHHHHHHHHHHHHHHHHH
T ss_pred -c--chHHHHHHHHHHHHHHHhHHH
Confidence 3 348889999999999876544
No 2
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=15.43 E-value=2.7e+02 Score=27.92 Aligned_cols=65 Identities=5% Similarity=0.019 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhhhhhcccCCCC-CccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhh
Q 009487 23 QEIIESYNGFCATTNSLLNGGR-DIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKF 88 (533)
Q Consensus 23 ~~~~~aw~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~L~~~gL~~~v~~~f~~~le~~lr~~i~P~F 88 (533)
..+...|+.+-++-.....+.. ..| =+++=.+|+.+|.++.++.+.+.+-+.++..++..+.|..
T Consensus 11 ~~~~~~W~~L~~ai~~I~~~~~~~~s-~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~ 76 (364)
T 4eoz_B 11 KYVNSIWDLLKNAIQEIQRKNNSGLS-FEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDV 76 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557789877555555555332 233 3567778899999999999999999999999998888873
No 3
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=14.97 E-value=3e+02 Score=28.26 Aligned_cols=65 Identities=5% Similarity=0.046 Sum_probs=49.6
Q ss_pred HHHHHHhhhhhhhhhcccCCCC-CccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhh
Q 009487 23 QEIIESYNGFCATTNSLLNGGR-DIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKF 88 (533)
Q Consensus 23 ~~~~~aw~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~L~~~gL~~~v~~~f~~~le~~lr~~i~P~F 88 (533)
..+...|+.+-++-.....+.. ..|. +++=.+|+.+|.++.++.+.+.+-+.++..++..+.|..
T Consensus 28 ~~~~~~W~~L~~ai~~I~~~~~~~~s~-eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~l 93 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEIQRKNNSGLSF-EELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDV 93 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889988555555555332 2333 567778899999999999999999999999998888873
No 4
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=14.92 E-value=2.6e+02 Score=23.54 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=39.1
Q ss_pred chHHHHHHHhhhhhhhhhcccCCCCCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 009487 20 ESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFE 81 (533)
Q Consensus 20 ~~~~~~~~aw~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~~gL~~~v~~~f~~~le~~lr 81 (533)
..+.++...||-| +.|.-..+.|....++.+...+-.+.|.+-+-...+..|.
T Consensus 11 ~~~~~iI~~WDPf---------~~g~D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFe 63 (90)
T 1u84_A 11 RLLLEWIGAWDPF---------GLGKDAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFD 63 (90)
T ss_dssp HHHHHHHHHHCTT---------SSCGGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCC---------cCCCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999988 4467779999999999998888766655554444444443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=12.84 E-value=3.7e+02 Score=24.20 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=27.7
Q ss_pred HHHHhHHHhhCCCccchhhhcchhHHhhccCCChHHHHHHHhcCCC
Q 009487 432 VSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGT 477 (533)
Q Consensus 432 IstIkal~iLDPsGvlL~~V~~PIr~YLr~R~DtVr~IV~~Ltd~~ 477 (533)
|.+++.|..+|+.|.= .+..||.+ .+.|+..|.|+.
T Consensus 107 I~~L~~F~y~d~~g~D---~G~nVR~k-------Ak~l~~LL~D~e 142 (148)
T 1inz_A 107 VQTLKDFQYVDRDGKD---QGVNVREK-------AKQLVALLRDED 142 (148)
T ss_dssp HHHHHHCCCCCSSCCC---CCHHHHHH-------HHHHHHHHTSCC
T ss_pred HHhhcceeeeCCCCcC---chHHHHHH-------HHHHHHHhCCHH
Confidence 6777888889999963 57778876 567888888764
No 6
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=11.35 E-value=48 Score=27.75 Aligned_cols=8 Identities=13% Similarity=0.496 Sum_probs=7.2
Q ss_pred hhhhhccc
Q 009487 86 SKFWRHFD 93 (533)
Q Consensus 86 P~FW~~f~ 93 (533)
|-||+||.
T Consensus 18 PPf~K~FT 25 (84)
T 3fbi_A 18 PPYVKFFT 25 (84)
T ss_dssp CGGGGGCC
T ss_pred CchhhhcC
Confidence 78999996
No 7
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=10.61 E-value=2.1e+02 Score=28.86 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=36.9
Q ss_pred HhhhhhhhccCCCchhHHHHHHHHHhhcCchhHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHhHHHhh
Q 009487 372 IAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTI 441 (533)
Q Consensus 372 i~elFdIIvdyPdS~pai~DLr~cL~~t~~r~~Lv~s~~~~~~~RLLhpGa~T~dIL~~YIstIkal~iL 441 (533)
|.++++-...||+... +++.++.- ++|++.+. --+++++-| .++++|.+.++||.++
T Consensus 104 i~~l~~~l~~fpd~~R---e~k~~vef----akLlr~y~--~~K~~l~~~----~~ldAY~~vi~aLhh~ 160 (290)
T 3c18_A 104 LTDLKKQLRNFPETER---CLQMSLSF----AKLLRRFQ--DGRNLFSRG----NYYDAYTHVHHALHHL 160 (290)
T ss_dssp HHHHHHHTTCCCHHHH---HHHHHHHH----HHHHHHHH--HHHHHHHTT----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHH---HHHHHHHH----HHHHHHHH--HHHHHHHCC----CcHHHHHHHHHHHHHH
Confidence 4455666779998654 66666653 33333332 234555554 5789999999999987
No 8
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=8.61 E-value=5.5e+02 Score=25.57 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=43.8
Q ss_pred HHHHhhhhhhhhhcccCCC-CCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchh
Q 009487 25 IIESYNGFCATTNSLLNGG-RDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVS 86 (533)
Q Consensus 25 ~~~aw~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~~gL~~~v~~~f~~~le~~lr~~i~P 86 (533)
.-+.|+.+-++-..+..+. ...|. +++=.+|+.+|.++.++.+.+.+-+.++..++..+.+
T Consensus 10 ~~~~W~~L~~ai~~I~~~~~~~~s~-eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~ 71 (354)
T 4a64_A 10 TDETWQKLKEAVEAIQNSTSIKYNL-EELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQ 71 (354)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456877655545554432 23343 5677788999999999999999999999999886643
No 9
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=8.51 E-value=1.4e+03 Score=22.86 Aligned_cols=86 Identities=17% Similarity=0.383 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCch-hHHHHHHHHHhhc-----------CchhHHHHHHHHHHHHh
Q 009487 349 SEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESS-PAIEDLKQCLEYT-----------GQHSKLVESFISALKYR 416 (533)
Q Consensus 349 ~~~l~~w~~~L~~~~~~~~~~lRi~elFdIIvdyPdS~-pai~DLr~cL~~t-----------~~r~~Lv~s~~~~~~~R 416 (533)
+.+.+.|..+|+.-+. ++.+-++ |... .++.||..+|... +.-..++--+.--++-.
T Consensus 83 N~AfR~w~~~l~~~~~---------~ll~~~l--~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klg 151 (303)
T 2ixm_A 83 NKAYRTWYAKLDEEAE---------NLVATVV--PTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIG 151 (303)
T ss_dssp CTHHHHHHHHHHHHHH---------HHHHTTS--CGGGGGGHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHH---------HHHHHHc--ChhhHHHHHHHHHHHHhCcCCCccCccCcHHHHHHHHHHHHHHHcC
Confidence 3578889887665433 3333222 4443 7999999999855 11223444444555555
Q ss_pred cccCCCChHH---HHHHHHHHHhHHHh---hCCCc
Q 009487 417 LLTAGASTND---ILHQYVSTIKALRT---IDPTG 445 (533)
Q Consensus 417 LLhpGa~T~d---IL~~YIstIkal~i---LDPsG 445 (533)
++.+.-.... |...|+..+|-|.. |-|.|
T Consensus 152 il~~~d~~a~vL~vF~~Yl~l~R~Lq~tY~LEPAG 186 (303)
T 2ixm_A 152 VLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAG 186 (303)
T ss_dssp SSCGGGHHHHHHTHHHHHHHHHHHHHHHTTCEESS
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHhcccccCC
Confidence 6543211112 33445555555543 34544
No 10
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=8.35 E-value=1.1e+03 Score=23.05 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhcCchhHHHHHHHHH---HHHhcccCCCChHHHHHHHHHHHh----HHHhhCCCc
Q 009487 387 PAIEDLKQCLEYTGQHSKLVESFISA---LKYRLLTAGASTNDILHQYVSTIK----ALRTIDPTG 445 (533)
Q Consensus 387 pai~DLr~cL~~t~~r~~Lv~s~~~~---~~~RLLhpGa~T~dIL~~YIstIk----al~iLDPsG 445 (533)
.++-||=.++++.+.|..|++.+-++ +..=.-||||++.. |..++.-|+ +|....+-|
T Consensus 46 ~~Lfelldv~~R~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~-l~~~l~~l~~~~~~L~~~~r~G 110 (247)
T 2oez_A 46 RALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEA-LNSLLNEIDVVHSQLMGAERFG 110 (247)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTCTTSCHHH-HHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHH-HHHHHHHHHHHHHHHHhcCccc
Confidence 46788889999999999998888744 55555799999854 455554444 444444444
Done!