Query 009487
Match_columns 533
No_of_seqs 161 out of 205
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 06:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009487.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009487hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp3a3 a.177.1.1 (A:0-86) Sig 45.4 21 0.0015 27.4 6.2 60 402-462 19-85 (87)
2 d1j8yf1 a.24.13.1 (F:3-86) Sig 14.6 1.7E+02 0.013 22.0 6.2 44 387-430 25-72 (84)
3 d2mysc_ a.39.1.5 (C:) Myosin R 13.6 1.8E+02 0.013 22.3 6.3 27 373-399 7-33 (145)
4 d2oeza1 e.68.1.1 (A:1-245) Unc 12.6 2.2E+02 0.016 25.5 7.3 48 388-436 45-95 (245)
5 d2qy9a1 a.24.13.1 (A:201-284) 11.2 2.2E+02 0.016 20.8 5.9 53 379-431 18-70 (84)
6 d1m0ua1 a.45.1.1 (A:123-249) C 10.8 31 0.0022 26.8 0.5 13 453-465 113-125 (127)
7 d1oe8a1 a.45.1.1 (A:85-207) Cl 10.7 3.2E+02 0.023 20.5 7.8 58 403-462 49-122 (123)
8 d1wgwa_ a.24.13.1 (A:) Signal 9.9 1.6E+02 0.012 22.9 4.6 43 387-429 34-80 (99)
9 d2hyec2 a.118.17.1 (C:55-401) 9.0 1.7E+02 0.012 26.4 5.3 60 27-86 7-66 (347)
10 d2cvda1 a.45.1.1 (A:76-199) Cl 8.9 40 0.0029 25.5 0.5 12 454-465 111-122 (124)
No 1
>d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=45.37 E-value=21 Score=27.41 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHhcccCCCChHHHHH-HHHHHHhHHHhhCCCc-cchhhhcch-----hHHhhccC
Q 009487 402 HSKLVESFISALKYRLLTAGASTNDILH-QYVSTIKALRTIDPTG-VFLEAVGEP-----IRDYLRGR 462 (533)
Q Consensus 402 r~~Lv~s~~~~~~~RLLhpGa~T~dIL~-~YIstIkal~iLDPsG-vlL~~V~~P-----Ir~YLr~R 462 (533)
+..||.+....+..|+. +|+.-.|+++ ..+..++|+.-.||+- +-+..-+.+ |.+|||+.
T Consensus 19 ~~~LV~~ia~~~~~~~~-~~~e~eDL~q~G~igL~~A~~~yd~~~g~~F~tYA~~~Irgai~d~lRk~ 85 (87)
T d1rp3a3 19 YLPLVKAIATNIKKHLP-EDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSL 85 (87)
T ss_dssp HHHHHHHHHHHHHTTSC-TTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44566666666666654 7898888876 5789999999999964 434433333 55566654
No 2
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=14.56 E-value=1.7e+02 Score=22.00 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCchhHHHHHHHHHHHHhcc----cCCCChHHHHHH
Q 009487 387 PAIEDLKQCLEYTGQHSKLVESFISALKYRLL----TAGASTNDILHQ 430 (533)
Q Consensus 387 pai~DLr~cL~~t~~r~~Lv~s~~~~~~~RLL----hpGa~T~dIL~~ 430 (533)
.++.|+|..|-..+-.-.+|..|++.++.|.+ .+|++..+.+..
T Consensus 25 ~~l~eIr~ALLeADVn~~vv~~f~~~ik~k~~~~~v~~g~~~~~~i~k 72 (84)
T d1j8yf1 25 DFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIK 72 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 46888888888888888999999999998886 567777666544
No 3
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.65 E-value=1.8e+02 Score=22.33 Aligned_cols=27 Identities=4% Similarity=-0.006 Sum_probs=14.7
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhc
Q 009487 373 AKLFEIIVDYPESSPAIEDLKQCLEYT 399 (533)
Q Consensus 373 ~elFdIIvdyPdS~pai~DLr~cL~~t 399 (533)
.|.|..+-.=-+..-...||+.+|+.-
T Consensus 7 ke~F~~~D~d~~G~I~~~el~~~l~~l 33 (145)
T d2mysc_ 7 KEAFLLFDRTGDAKITASQVGDIARAL 33 (145)
T ss_pred HHHHHHHcCCCCCeECHHHHHHHHHHh
Confidence 345555544444455566666666543
No 4
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=12.58 E-value=2.2e+02 Score=25.48 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHH---HHHhcccCCCChHHHHHHHHHHHh
Q 009487 388 AIEDLKQCLEYTGQHSKLVESFISA---LKYRLLTAGASTNDILHQYVSTIK 436 (533)
Q Consensus 388 ai~DLr~cL~~t~~r~~Lv~s~~~~---~~~RLLhpGa~T~dIL~~YIstIk 436 (533)
++-||-.++.+.+.+..|++.|... +.+=.-+||+.... |+..+.-|.
T Consensus 45 ~Lfei~e~~~R~DlK~eLikeLerq~~~l~~~~~~p~vd~~~-l~~~l~~i~ 95 (245)
T d2oeza1 45 ALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEA-LNSLLNEID 95 (245)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTCTTSCHHH-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHH-HHHHHHHHH
Confidence 6778888999999999999988643 45555689999854 455554444
No 5
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=11.20 E-value=2.2e+02 Score=20.78 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=39.1
Q ss_pred hccCCCchhHHHHHHHHHhhcCchhHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 009487 379 IVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQY 431 (533)
Q Consensus 379 IvdyPdS~pai~DLr~cL~~t~~r~~Lv~s~~~~~~~RLLhpGa~T~dIL~~Y 431 (533)
+..-+-....++||-.-|-..+.--+.+..+...++.+.--.+..+.+-+..+
T Consensus 18 ~~~~~id~~~leeLEe~LI~aDvG~~tt~~ii~~lk~~~~~~~~~~~~~l~~~ 70 (84)
T d2qy9a1 18 FRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGL 70 (84)
T ss_dssp HTTCBCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCBGGGHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 33445567789999999998888888888888888888877777665444433
No 6
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.83 E-value=31 Score=26.81 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.3
Q ss_pred chhHHhhccCCCh
Q 009487 453 EPIRDYLRGRKDT 465 (533)
Q Consensus 453 ~PIr~YLr~R~Dt 465 (533)
.-|++||++|+.|
T Consensus 113 P~ik~yl~~Rp~~ 125 (127)
T d1m0ua1 113 EPIKAWIEKRPVT 125 (127)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHHHCCCC
Confidence 4578899999876
No 7
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}
Probab=10.70 E-value=3.2e+02 Score=20.54 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHh---ccc-CCCChHHHHHHHHHHHhHHHhhCCCc---------cchhhh-c-ch-hHHhhccC
Q 009487 403 SKLVESFISALKYR---LLT-AGASTNDILHQYVSTIKALRTIDPTG---------VFLEAV-G-EP-IRDYLRGR 462 (533)
Q Consensus 403 ~~Lv~s~~~~~~~R---LLh-pGa~T~dIL~~YIstIkal~iLDPsG---------vlL~~V-~-~P-Ir~YLr~R 462 (533)
......|-+.+..+ .+. ...+=.|+...- .+.-+..++|.- ...++| . .| |++||.+|
T Consensus 49 ~~~l~~le~~L~~~~~~f~vG~~lT~aD~~~~~--~l~~~~~~~~~~~~~~~P~L~~~~~~v~~~~P~I~~yl~sR 122 (123)
T d1oe8a1 49 PVLLDIICESLKASTGKLAVGDKVTLADLVLIA--VIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSDR 122 (123)
T ss_dssp HHHHHHHHHHHHTCSSSSSSTTSCCHHHHHHHH--HHHHHHHHCTTTTTTSCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCeeeCCCCcHHHHHHHH--HHHHHHHhCcccccccCcHHHHHHHHHHHcChHHHHHHHcc
Confidence 34455555555543 333 457777776443 445556666642 234576 3 57 99999987
No 8
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.88 E-value=1.6e+02 Score=22.86 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhcCchhHHHHHHHHHHHHhccc----CCCChHHHHH
Q 009487 387 PAIEDLKQCLEYTGQHSKLVESFISALKYRLLT----AGASTNDILH 429 (533)
Q Consensus 387 pai~DLr~cL~~t~~r~~Lv~s~~~~~~~RLLh----pGa~T~dIL~ 429 (533)
.++.|++..|-..+-.-.+|..|+..++.|..- +|++..+.+.
T Consensus 34 ~~l~eI~~ALLeADVn~~vV~~f~~~Ik~k~~~~~~~~g~n~~q~i~ 80 (99)
T d1wgwa_ 34 AMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQ 80 (99)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhccccccCCCHHHHHH
Confidence 468899999988888999999999999999873 3454444433
No 9
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.99 E-value=1.7e+02 Score=26.42 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHhhhhhhhhhcccCCCCCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchh
Q 009487 27 ESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVS 86 (533)
Q Consensus 27 ~aw~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~~gL~~~v~~~f~~~le~~lr~~i~P 86 (533)
+.|..+-.+-..+..+..-...=+++=.+|+.||.++-++.+.+.+.+.++..+.+.+.|
T Consensus 7 ~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~ 66 (347)
T d2hyec2 7 DTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILP 66 (347)
T ss_dssp THHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666444445555333222345677888889999999999999999999999887766
No 10
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.93 E-value=40 Score=25.54 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=9.8
Q ss_pred hhHHhhccCCCh
Q 009487 454 PIRDYLRGRKDT 465 (533)
Q Consensus 454 PIr~YLr~R~Dt 465 (533)
-|++||.+|++|
T Consensus 111 ~vk~yl~~rp~t 122 (124)
T d2cvda1 111 AVANWIKRRPQT 122 (124)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHHCcCC
Confidence 378899889886
Done!