Query 009489
Match_columns 533
No_of_seqs 330 out of 2111
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 4.6E-26 1.6E-30 211.2 11.0 162 39-216 2-177 (178)
2 3krm_A Insulin-like growth fac 99.9 2E-25 6.9E-30 203.8 14.0 155 42-215 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 4.1E-25 1.4E-29 201.2 11.0 155 41-214 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 2.1E-24 7E-29 199.2 12.6 156 42-212 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 3.7E-24 1.3E-28 195.6 11.3 154 43-214 2-160 (164)
6 2anr_A Neuro-oncological ventr 99.9 1.8E-23 6.2E-28 193.6 10.9 160 281-446 3-177 (178)
7 3krm_A Insulin-like growth fac 99.9 4.3E-23 1.5E-27 188.4 12.5 154 283-445 2-157 (163)
8 3n89_A Defective in GERM LINE 99.9 6.8E-23 2.3E-27 206.3 13.5 229 135-442 25-259 (376)
9 2jzx_A Poly(RC)-binding protei 99.9 1E-22 3.6E-27 185.2 9.5 154 282-444 3-159 (160)
10 1j4w_A FUSE binding protein; s 99.9 2.4E-22 8.4E-27 185.3 11.5 155 283-442 2-174 (174)
11 2jvz_A KH type-splicing, FAR u 99.9 1.1E-21 3.7E-26 179.3 13.5 154 284-445 2-161 (164)
12 3n89_A Defective in GERM LINE 99.8 1.6E-20 5.6E-25 189.0 15.1 290 38-437 25-334 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 1.3E-17 4.5E-22 148.0 10.3 136 42-214 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 1.1E-17 3.7E-22 148.5 8.5 137 283-444 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 1.1E-15 3.8E-20 144.1 8.9 141 44-215 35-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.6 3.5E-15 1.2E-19 140.7 10.4 68 137-214 31-103 (219)
17 1dtj_A RNA-binding neurooncolo 99.5 1.4E-14 4.8E-19 114.0 6.6 74 369-444 2-75 (76)
18 2axy_A Poly(RC)-binding protei 99.5 1E-14 3.4E-19 113.7 5.5 70 369-445 4-73 (73)
19 2hh2_A KH-type splicing regula 99.5 1.6E-14 5.4E-19 121.3 6.5 74 370-445 7-80 (107)
20 2p2r_A Poly(RC)-binding protei 99.5 1.6E-14 5.3E-19 113.7 5.5 72 369-445 4-75 (76)
21 2axy_A Poly(RC)-binding protei 99.5 1.8E-14 6.1E-19 112.3 5.6 70 138-214 3-72 (73)
22 1zzk_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 112.9 7.9 73 368-445 5-77 (82)
23 1wvn_A Poly(RC)-binding protei 99.5 2.4E-14 8.1E-19 114.4 6.0 73 368-445 4-76 (82)
24 1ec6_A RNA-binding protein NOV 99.5 2.3E-14 8E-19 115.8 4.7 79 369-449 2-80 (87)
25 1j5k_A Heterogeneous nuclear r 99.4 5.8E-14 2E-18 113.9 5.5 74 367-445 11-84 (89)
26 1dtj_A RNA-binding neurooncolo 99.4 1.1E-13 3.7E-18 108.9 6.7 74 139-214 2-75 (76)
27 2opv_A KHSRP protein; KH domai 99.4 1.7E-13 5.7E-18 110.2 7.9 74 368-444 12-85 (85)
28 2dgr_A Ring finger and KH doma 99.4 4.7E-14 1.6E-18 112.3 4.4 68 368-443 8-75 (83)
29 1wvn_A Poly(RC)-binding protei 99.4 1.5E-13 5.1E-18 109.7 6.5 74 137-215 3-76 (82)
30 1x4n_A FAR upstream element bi 99.4 1.9E-13 6.7E-18 111.4 7.0 73 368-445 13-85 (92)
31 1x4m_A FAR upstream element bi 99.4 1.1E-13 3.6E-18 113.5 5.3 76 367-445 12-87 (94)
32 1zzk_A Heterogeneous nuclear r 99.4 2.9E-13 9.9E-18 108.0 7.7 72 138-214 5-76 (82)
33 1tua_A Hypothetical protein AP 99.4 1.6E-13 5.4E-18 126.1 6.9 140 45-214 6-160 (191)
34 2p2r_A Poly(RC)-binding protei 99.4 1.5E-13 5E-18 108.1 5.7 72 138-214 3-74 (76)
35 2hh3_A KH-type splicing regula 99.4 2.8E-13 9.7E-18 113.0 6.7 72 370-446 11-82 (106)
36 2opv_A KHSRP protein; KH domai 99.4 7.1E-13 2.4E-17 106.5 8.0 75 137-214 11-85 (85)
37 1tua_A Hypothetical protein AP 99.4 1.1E-12 3.9E-17 120.4 10.2 64 142-215 6-74 (191)
38 1ec6_A RNA-binding protein NOV 99.4 2.7E-13 9.2E-18 109.5 5.3 75 139-215 2-76 (87)
39 1we8_A Tudor and KH domain con 99.4 5.9E-13 2E-17 111.2 6.9 76 368-446 13-88 (104)
40 1x4n_A FAR upstream element bi 99.4 6.6E-13 2.3E-17 108.3 6.2 74 137-215 12-85 (92)
41 1j5k_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 108.5 5.2 74 136-214 10-83 (89)
42 2dgr_A Ring finger and KH doma 99.4 3.1E-13 1.1E-17 107.5 3.9 71 136-214 6-76 (83)
43 1x4m_A FAR upstream element bi 99.4 4.7E-13 1.6E-17 109.6 5.1 77 136-215 11-87 (94)
44 2hh2_A KH-type splicing regula 99.3 8.9E-13 3.1E-17 110.6 6.3 73 141-215 8-80 (107)
45 1we8_A Tudor and KH domain con 99.3 7.4E-13 2.5E-17 110.5 5.4 80 136-218 11-90 (104)
46 2hh3_A KH-type splicing regula 99.3 1.3E-12 4.4E-17 109.0 6.1 71 139-214 10-80 (106)
47 2ctm_A Vigilin; K homology typ 99.3 2.1E-12 7.1E-17 105.7 7.0 74 368-447 15-88 (95)
48 2cte_A Vigilin; K homology typ 99.3 2.1E-12 7.3E-17 105.6 5.9 70 369-445 16-85 (94)
49 2ctl_A Vigilin; K homology typ 99.3 4.9E-12 1.7E-16 104.0 7.5 73 369-445 16-88 (97)
50 1vig_A Vigilin; RNA-binding pr 99.3 1.8E-12 6.1E-17 100.3 4.6 66 369-441 4-69 (71)
51 1vig_A Vigilin; RNA-binding pr 99.3 3E-12 1E-16 99.0 5.0 68 138-212 3-70 (71)
52 2ctm_A Vigilin; K homology typ 99.3 5.6E-12 1.9E-16 103.1 6.2 74 135-214 12-85 (95)
53 2cte_A Vigilin; K homology typ 99.3 4.7E-12 1.6E-16 103.6 5.6 74 135-215 12-85 (94)
54 2ctl_A Vigilin; K homology typ 99.2 1.3E-11 4.4E-16 101.5 6.8 72 139-214 16-87 (97)
55 2ctk_A Vigilin; K homology typ 99.2 1.5E-11 5.2E-16 102.3 6.1 71 369-446 16-86 (104)
56 2ctk_A Vigilin; K homology typ 99.1 3.5E-11 1.2E-15 100.1 5.2 70 138-214 15-84 (104)
57 2ctj_A Vigilin; K homology typ 99.1 1.2E-10 4.1E-15 95.0 5.8 71 368-445 15-86 (95)
58 2ctf_A Vigilin; K homology typ 99.1 2.2E-10 7.6E-15 94.8 7.1 68 369-446 26-94 (102)
59 2ctj_A Vigilin; K homology typ 99.1 1.1E-10 3.6E-15 95.3 5.0 73 135-214 12-85 (95)
60 2ctf_A Vigilin; K homology typ 99.0 3.7E-10 1.3E-14 93.4 6.3 66 139-214 26-92 (102)
61 2cpq_A FragIle X mental retard 98.9 1.8E-09 6.1E-14 86.4 4.7 63 368-440 13-77 (91)
62 2cpq_A FragIle X mental retard 98.7 7.3E-09 2.5E-13 82.8 4.7 65 136-210 11-77 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 1.3E-07 4.5E-12 81.5 7.9 76 369-444 6-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.4 3.7E-07 1.3E-11 77.1 7.5 77 369-445 11-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.4 4.8E-07 1.6E-11 78.0 8.2 77 138-214 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.4 5.3E-07 1.8E-11 76.1 6.4 77 138-214 10-99 (119)
67 3u1k_A Polyribonucleotide nucl 98.2 1.7E-06 5.9E-11 93.5 7.0 95 107-212 534-629 (630)
68 2bl5_A MGC83862 protein, quaki 98.1 2.7E-06 9.3E-11 73.6 4.7 74 370-443 2-100 (140)
69 2bl5_A MGC83862 protein, quaki 98.1 3.2E-06 1.1E-10 73.2 4.8 75 140-214 2-101 (140)
70 3u1k_A Polyribonucleotide nucl 97.8 1E-05 3.6E-10 87.5 4.1 63 369-442 566-629 (630)
71 3v69_A Protein filia; RNA-bind 97.7 6.4E-05 2.2E-09 63.6 6.4 70 370-445 56-125 (140)
72 4aid_A Polyribonucleotide nucl 97.6 2.4E-05 8.3E-10 85.6 3.8 97 107-214 537-634 (726)
73 2cxc_A NUSA; transcription ter 97.5 1.3E-05 4.5E-10 69.8 -0.5 105 43-177 36-140 (144)
74 2cxc_A NUSA; transcription ter 97.2 0.00017 5.9E-09 62.7 3.0 104 284-406 36-139 (144)
75 3v69_A Protein filia; RNA-bind 97.1 0.00074 2.5E-08 57.2 6.4 67 142-214 58-124 (140)
76 4aid_A Polyribonucleotide nucl 97.1 0.00014 4.8E-09 79.6 2.2 67 369-446 569-636 (726)
77 2asb_A Transcription elongatio 96.1 0.0076 2.6E-07 57.0 6.0 98 52-180 126-224 (251)
78 1k0r_A NUSA; two component arr 95.8 0.0043 1.5E-07 62.1 3.2 98 52-180 249-347 (366)
79 3cdi_A Polynucleotide phosphor 95.7 0.0028 9.6E-08 69.6 1.8 96 107-213 527-623 (723)
80 2asb_A Transcription elongatio 95.1 0.02 6.8E-07 54.2 4.9 97 293-409 126-223 (251)
81 1e3p_A Guanosine pentaphosphat 94.8 0.0033 1.1E-07 69.4 -1.5 94 107-212 566-660 (757)
82 1k0r_A NUSA; two component arr 94.5 0.035 1.2E-06 55.5 5.2 97 293-409 249-346 (366)
83 3cdi_A Polynucleotide phosphor 94.4 0.0086 2.9E-07 65.8 0.6 65 369-444 559-624 (723)
84 1hh2_P NUSA, N utilization sub 94.2 0.057 2E-06 53.8 6.1 96 52-178 245-341 (344)
85 1hh2_P NUSA, N utilization sub 92.7 0.13 4.5E-06 51.1 5.8 96 293-408 245-341 (344)
86 1e3p_A Guanosine pentaphosphat 92.6 0.0075 2.6E-07 66.5 -3.6 63 369-442 597-660 (757)
87 2pt7_G HP1451, hypothetical pr 68.8 1.9 6.7E-05 37.4 1.8 30 44-73 34-63 (152)
88 2pt7_G HP1451, hypothetical pr 61.3 2.8 9.6E-05 36.4 1.4 64 141-214 34-98 (152)
89 1wh9_A 40S ribosomal protein S 61.3 2.9 0.0001 33.0 1.4 27 45-71 37-63 (92)
90 1wh9_A 40S ribosomal protein S 54.0 4 0.00014 32.2 1.0 28 141-168 36-63 (92)
91 3ukx_C Bimax2 peptide; arm rep 52.5 12 0.0004 21.4 2.5 23 4-27 3-25 (28)
92 3iev_A GTP-binding protein ERA 36.5 11 0.00038 36.5 1.3 38 138-175 238-284 (308)
93 3gku_A Probable RNA-binding pr 33.5 12 0.00042 34.6 0.9 33 45-77 94-126 (225)
94 2kl8_A OR15; structural genomi 32.9 94 0.0032 22.3 5.3 29 417-445 39-67 (85)
95 3gku_A Probable RNA-binding pr 29.0 14 0.00046 34.3 0.4 33 141-173 93-125 (225)
96 3j20_C 30S ribosomal protein S 28.4 21 0.0007 32.7 1.5 27 45-71 42-68 (210)
97 2xzm_C KH domain containing pr 27.4 23 0.0008 33.0 1.8 29 44-72 48-76 (243)
98 2ba0_A Archeal exosome RNA bin 27.2 69 0.0024 29.5 5.0 56 372-438 138-193 (229)
99 3u5c_D RP13, YS3, 40S ribosoma 26.8 17 0.00058 33.9 0.7 29 370-398 44-72 (240)
100 3j20_C 30S ribosomal protein S 25.9 17 0.00057 33.3 0.5 27 371-397 41-67 (210)
101 3u5c_D RP13, YS3, 40S ribosoma 25.9 18 0.00061 33.7 0.7 28 45-72 46-73 (240)
102 2ba0_A Archeal exosome RNA bin 25.6 1E+02 0.0036 28.3 5.9 57 142-209 138-194 (229)
103 3iev_A GTP-binding protein ERA 25.0 29 0.00098 33.5 2.0 37 42-78 239-284 (308)
104 2xzm_C KH domain containing pr 24.8 21 0.00071 33.4 0.9 29 370-398 47-75 (243)
105 3iz6_B 40S ribosomal protein S 23.9 19 0.00064 33.3 0.4 29 44-72 45-73 (227)
106 3iz6_B 40S ribosomal protein S 22.9 17 0.00059 33.6 -0.1 29 370-398 44-72 (227)
107 2z0s_A Probable exosome comple 22.9 1.1E+02 0.0036 28.4 5.4 56 372-438 150-206 (235)
108 3r8n_C 30S ribosomal protein S 22.5 19 0.00065 32.8 0.1 27 45-71 63-89 (206)
109 2kl8_A OR15; structural genomi 22.2 2E+02 0.007 20.5 5.4 28 188-215 40-67 (85)
110 1wf3_A GTP-binding protein; GT 22.2 21 0.00072 34.4 0.4 36 140-175 230-274 (301)
111 4hhu_A OR280; engineered prote 21.2 3.3E+02 0.011 22.0 14.0 27 419-445 123-149 (170)
112 2zkq_c 40S ribosomal protein S 20.9 22 0.00076 33.2 0.2 29 44-72 45-73 (243)
113 4hhu_A OR280; engineered prote 20.8 3.4E+02 0.011 21.9 11.4 27 188-214 122-148 (170)
114 3i1m_C 30S ribosomal protein S 20.5 22 0.00075 33.0 0.1 27 45-71 64-90 (233)
115 3r8n_C 30S ribosomal protein S 20.3 18 0.0006 33.0 -0.6 34 372-405 63-100 (206)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=4.6e-26 Score=211.15 Aligned_cols=162 Identities=24% Similarity=0.411 Sum_probs=128.8
Q ss_pred CCCceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCC---CCCCCceEEEEEcCCccccccccCcccCCHHHHH
Q 009489 39 GPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDA 115 (533)
Q Consensus 39 ~~~~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a 115 (533)
.++.++++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|..++ +.+|
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A 68 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAV 68 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHH
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHH
Confidence 3678999999999999999999999999999999999999864 46789999999998665 3455
Q ss_pred HHHHHHHHHHhhccCC-----------CCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcc
Q 009489 116 LFKVHDRVIAEELRGD-----------EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184 (533)
Q Consensus 116 ~~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 184 (533)
...|.+.+.+...... .........+++|+||.+++|+||||+|++||+|+++|||+|+|.++...
T Consensus 69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~--- 145 (178)
T 2anr_A 69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG--- 145 (178)
T ss_dssp HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----
T ss_pred HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC---
Confidence 5555554432110000 00012245789999999999999999999999999999999999875432
Q ss_pred cCCCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009489 185 ALRSDELVQISGEASVVKKALCQIASRLHDNP 216 (533)
Q Consensus 185 ~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~ 216 (533)
..+.++.|+|+|++++|.+|+.+|.++|+++|
T Consensus 146 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 146 INLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp --CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 24678999999999999999999999999864
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=203.84 Aligned_cols=155 Identities=25% Similarity=0.407 Sum_probs=129.5
Q ss_pred ceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCC-CCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009489 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET-VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (533)
Q Consensus 42 ~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~-~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (533)
+-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|.++. +.+|..+|+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4578999999999999999999999999999999999875 67889999999998765 567777777
Q ss_pred HHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHH
Q 009489 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200 (533)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~ 200 (533)
+.+.+..... .......+++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFFG---PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSSC---SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhcccccc---cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 7665543221 123456788999999999999999999999999999999999654 3343 133458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 009489 201 VKKALCQIASRLHDN 215 (533)
Q Consensus 201 V~~A~~~I~~~l~~~ 215 (533)
|.+|+.+|.+++.+.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999873
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=201.16 Aligned_cols=155 Identities=29% Similarity=0.471 Sum_probs=129.0
Q ss_pred CceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009489 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (533)
Q Consensus 41 ~~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (533)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|..++ +.+|...+.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 46789999999999999999999999999999999999876 678999999998665 456777777
Q ss_pred HHHHHhhccCCC--CCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCH
Q 009489 121 DRVIAEELRGDE--DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198 (533)
Q Consensus 121 ~~i~~~~~~~~~--~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~ 198 (533)
+.+.+....... .......++++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..| .+.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCH
Confidence 665543221111 0123346899999999999999999999999999999999999753 334 3678999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009489 199 SVVKKALCQIASRLHD 214 (533)
Q Consensus 199 ~~V~~A~~~I~~~l~~ 214 (533)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=2.1e-24 Score=199.23 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=122.8
Q ss_pred ceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHH
Q 009489 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (533)
Q Consensus 42 ~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~ 121 (533)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|.+++ +.+|+..|.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 467899999999999999999999999999999999987666788999999999766 3455555554
Q ss_pred HHHHhhccCC--C------------C---CCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcc
Q 009489 122 RVIAEELRGD--E------------D---SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184 (533)
Q Consensus 122 ~i~~~~~~~~--~------------~---~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 184 (533)
.+.+...... . + ......++++|+||.+++|+||||+|++||+|+++|||+|+|.++. +++
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 4432210000 0 0 0112346899999999999999999999999999999999997642 334
Q ss_pred cCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009489 185 ALRSDELVQISGEASVVKKALCQIASRL 212 (533)
Q Consensus 185 ~~~~dr~v~I~G~~~~V~~A~~~I~~~l 212 (533)
..+.++.|+|+|++++|.+|+.+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999998864
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=195.64 Aligned_cols=154 Identities=23% Similarity=0.364 Sum_probs=123.1
Q ss_pred eEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCC--CCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009489 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET--VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (533)
Q Consensus 43 ~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~--~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (533)
++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|.+++ +.+|+..|.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 678999999999999999999999999999999999754 35677999999998665 456666666
Q ss_pred HHHHHhhccCCC---CCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcC
Q 009489 121 DRVIAEELRGDE---DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGE 197 (533)
Q Consensus 121 ~~i~~~~~~~~~---~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~ 197 (533)
+.+.+....... +.......+++|+||.+++|+||||+|++|++|+++|||+|+|.+... .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcC
Confidence 544322111000 001112356899999999999999999999999999999999976532 245899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009489 198 ASVVKKALCQIASRLHD 214 (533)
Q Consensus 198 ~~~V~~A~~~I~~~l~~ 214 (533)
+++|.+|+.+|.+++++
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999875
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=1.8e-23 Score=193.64 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=121.3
Q ss_pred CceEEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCCC---CCCCceeEEecCcchhhhhhhHHHHHHHHhCccc
Q 009489 281 SKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS---TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRC 357 (533)
Q Consensus 281 ~~~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~---~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~ 357 (533)
..+++++|+||.+.+|.|||++|++|++|+++|||+|+|++.. ++..+|+++|+|... .+..+.+.+.......
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~---~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---ALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH---HHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH---HHHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999998642 356789999999642 2222333332221111
Q ss_pred cccc------------ccccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEE
Q 009489 358 SEKI------------ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425 (533)
Q Consensus 358 ~~~~------------~~~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~ 425 (533)
.... .........+.+|+||.+++|+||||+|++|++|+++|||+|.|.+.+..| .+++++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v~I~ 156 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVVTVS 156 (178)
T ss_dssp CCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEE
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEEEEE
Confidence 0000 000112357889999999999999999999999999999999997653322 4678999999
Q ss_pred eCHHHHHHHHHHHHHHHHhcc
Q 009489 426 GDLDLAKDALIQVMTRLRANL 446 (533)
Q Consensus 426 G~~~~v~~A~~~I~~~l~~~~ 446 (533)
|++++|+.|+.+|.++|++++
T Consensus 157 G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999998753
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=188.36 Aligned_cols=154 Identities=21% Similarity=0.346 Sum_probs=119.2
Q ss_pred eEEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCC-CCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccc-
Q 009489 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSS-STEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK- 360 (533)
Q Consensus 283 ~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~-~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~- 360 (533)
+.+++|+||.+.+|.|||++|++|++|+++|||+|++++. .++..+|+++|+|... .+..+...+... +.+.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e---~v~~A~~~I~~~---~~e~~ 75 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE---AQFKAQGRIYGK---LKEEN 75 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHH---HHHHHHHHHHHH---HHHTT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHH---HHHHHHHHHHHH---Hhccc
Confidence 3488999999999999999999999999999999999985 3567899999999642 222222222221 1111
Q ss_pred cccccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHH
Q 009489 361 IERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMT 440 (533)
Q Consensus 361 ~~~~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~ 440 (533)
..........+.+|.||.+++|+||||+|++|++|++.|||+|.|.. +..|. ..+++.|+|+|++++|+.|+.+|.+
T Consensus 76 ~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 76 FFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD--ENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SSCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC--TTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred ccccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC--CCCceEEEEEeCHHHHHHHHHHHHH
Confidence 11112234578899999999999999999999999999999999964 34443 2334589999999999999999999
Q ss_pred HHHhc
Q 009489 441 RLRAN 445 (533)
Q Consensus 441 ~l~~~ 445 (533)
+|++.
T Consensus 153 ~i~~~ 157 (163)
T 3krm_A 153 ILAQV 157 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.89 E-value=6.8e-23 Score=206.30 Aligned_cols=229 Identities=16% Similarity=0.136 Sum_probs=155.8
Q ss_pred CCCCceEEEEEecCCceeeeeccCc--hHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009489 135 DGGHQVTAKLLVPSDQIGCVIGKGG--QIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (533)
Q Consensus 135 ~~~~~~~~~llVp~~~~g~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l 212 (533)
...+.+++.+.||..++++||||+| ++|++|+++|||+|+|++...-..........|+|+|.+++|++|..+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999 99999999999999997643000001134568999999999999999988743
Q ss_pred hcCCCCccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeeec
Q 009489 213 HDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPV 292 (533)
Q Consensus 213 ~~~~~~~~~~~~s~~~~~~~~gg~~~~p~~~~~~~~~~p~~~~~g~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~v~vp~ 292 (533)
. +++.+.+|.
T Consensus 105 P----------------------------------------------------------------------l~i~~elp~ 114 (376)
T 3n89_A 105 H----------------------------------------------------------------------FTVFMALSK 114 (376)
T ss_dssp E----------------------------------------------------------------------EEEEEECTT
T ss_pred C----------------------------------------------------------------------ceEEEEccc
Confidence 1 233444443
Q ss_pred CccccccccCchhhHhhhhhcCCeEEecCCCCC--CCceeEEecCcchhhhhhhHHHHHHHHhCcccccccccccCCcce
Q 009489 293 ANIGGVIGKGGAIINQIRQESGAAIKVDSSSTE--GDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISF 370 (533)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~--~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (533)
..+.. ...+..|.+ ++.++++|.++..... .....|+|+|.+.-.+ .+.+|+..+...+.+. .......+
T Consensus 115 ~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~---~akeA~~~Ll~~l~~~--e~~~~~~~ 186 (376)
T 3n89_A 115 MKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQH---ELIEAAKRLNEILFRE--SPAPENNF 186 (376)
T ss_dssp CSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHH---HHHHHHHHHHHHHCC----CCCSSCE
T ss_pred cccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHH---HHHHHHHHHHHHHHhh--hcccccce
Confidence 22221 111234444 5678999998654211 1356799999763222 2344433333222221 11122468
Q ss_pred eEEEeecCCceeEEecCCC--hhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHH
Q 009489 371 TTRLLVPTSRIGCLIGKGG--SIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRL 442 (533)
Q Consensus 371 ~~~l~Vp~~~~G~IIGkgG--~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 442 (533)
+..|.|+..+|..|||++| ..|++|+++|||+|.++..++ +.........|+|+|+.++|..|+.+|+++|
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 9999999999999999999 667999999999999865422 1100123458999999999999999998876
No 9
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=185.19 Aligned_cols=154 Identities=25% Similarity=0.431 Sum_probs=119.0
Q ss_pred ceEEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCCCCCCCceeEEecCcc-hhhhhhhHHHHHHHHhCcccccc
Q 009489 282 KEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKE-FFEDTLSATIEAVVRLQPRCSEK 360 (533)
Q Consensus 282 ~~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervi~I~G~~-~~~~~~~~~~~a~~~~~~~~~~~ 360 (533)
.+++++|+||.+.+|.|||++|++|++|+++|||+|++++. +.++++++|+|.. .+..+.....+.+..... ..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~---~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDIS---SS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT---SC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHhhcc---cc
Confidence 35789999999999999999999999999999999999975 3578999999973 222222212211111100 00
Q ss_pred ccc--ccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHH
Q 009489 361 IER--DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQV 438 (533)
Q Consensus 361 ~~~--~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I 438 (533)
... ......++.+|.||.+++|+||||+|++|++|+++|||+|.|.+ +.+| .++++.|+|+|++++|+.|+.+|
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~~~I 153 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 153 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHHHHH
Confidence 000 01123589999999999999999999999999999999999964 3344 36789999999999999999999
Q ss_pred HHHHHh
Q 009489 439 MTRLRA 444 (533)
Q Consensus 439 ~~~l~~ 444 (533)
.+.+.+
T Consensus 154 ~~~i~e 159 (160)
T 2jzx_A 154 CVVMLE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.87 E-value=2.4e-22 Score=185.29 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=116.6
Q ss_pred eEEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccc--
Q 009489 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK-- 360 (533)
Q Consensus 283 ~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~-- 360 (533)
..+++|+||.+.+|.|||++|++|++|+++|||+|+|++......+++++|+|... .+..+.+.+..+.......
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~---~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPD---RAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHH---HHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHH---HHHHHHHHHHHHHHhcccCCC
Confidence 35789999999999999999999999999999999998765566889999999742 2222222222211100000
Q ss_pred ----------------cccccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEE
Q 009489 361 ----------------IERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQI 424 (533)
Q Consensus 361 ----------------~~~~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I 424 (533)
..........+.+|.||.+++|+||||+|++|++|+++|||+|.|.+. .|++.++++++|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN--PPPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC--CTTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC--CCCCCCCCceEEEE
Confidence 000000124688999999999999999999999999999999999753 23355677899999
Q ss_pred EeCHHHHHHHHHHHHHHH
Q 009489 425 SGDLDLAKDALIQVMTRL 442 (533)
Q Consensus 425 ~G~~~~v~~A~~~I~~~l 442 (533)
+|++++|+.|+.+|.++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999998764
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=179.27 Aligned_cols=154 Identities=18% Similarity=0.303 Sum_probs=118.7
Q ss_pred EEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCCC--CCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccc-
Q 009489 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS--TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK- 360 (533)
Q Consensus 284 ~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~--~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~- 360 (533)
++++|+||.+.+|.|||++|++|++|+++|||+|.+.+.. +...+++++|+|.. +.+..+...+..+.......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~---~~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP---YKVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH---HHHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH---HHHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997643 34578899999964 23333444444443221100
Q ss_pred ccc--c-cCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHH
Q 009489 361 IER--D-SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQ 437 (533)
Q Consensus 361 ~~~--~-~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~ 437 (533)
... + .....++.+|.||.+++|+||||+|++|++|+++|||+|.|.+.+ + .+.++.|+|+|++++++.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~ 153 (164)
T 2jvz_A 79 FGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARI 153 (164)
T ss_dssp CSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHHHHH
Confidence 000 0 001135688999999999999999999999999999999996542 2 3557999999999999999999
Q ss_pred HHHHHHhc
Q 009489 438 VMTRLRAN 445 (533)
Q Consensus 438 I~~~l~~~ 445 (533)
|.++|++.
T Consensus 154 I~~~i~~~ 161 (164)
T 2jvz_A 154 INDLLQSL 161 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998764
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.84 E-value=1.6e-20 Score=189.02 Aligned_cols=290 Identities=11% Similarity=0.100 Sum_probs=180.8
Q ss_pred cCCCceEEEEEecCCccceeecCCc--HHHHHHHHHhCCeEEEcCCC-----CCCCceEEEEEcCCccccccccCcccCC
Q 009489 38 IGPEDTVYRYLCPIRKIGSIIGRGG--EIVKQLRIDTKSKIRIGETV-----PGSEERVVTVYSASDETNAFEDGDKFVS 110 (533)
Q Consensus 38 ~~~~~~~~rilvp~~~~g~IIGk~G--~~Ik~i~~~tga~I~i~~~~-----~~~~ervv~I~G~~~~~~~~~~~~~~v~ 110 (533)
.....|++.+.||..+|++||||+| ++|++|+++|+|+|+|++.. +......|+|+|.+++|
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV----------- 93 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV----------- 93 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH-----------
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH-----------
Confidence 4577899999999999999999999 99999999999999999764 11345789999998874
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCc
Q 009489 111 PAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190 (533)
Q Consensus 111 ~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr 190 (533)
.+|..+|.+. ..+++.+.+|...+.. ..-+..|.+ ++..+++|.|....+.. .....
T Consensus 94 --E~AR~~I~~l---------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd 150 (376)
T 3n89_A 94 --DRARMLMRRN---------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTT 150 (376)
T ss_dssp --HHHHHHHHHS---------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEE
T ss_pred --HHHHHHHHhc---------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCC
Confidence 3344444321 2455666666543332 122345555 67899999986643211 11245
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 009489 191 LVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRS 270 (533)
Q Consensus 191 ~v~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~s~~~~~~~~gg~~~~p~~~~~~~~~~p~~~~~g~~~~d~~~~~~~~ 270 (533)
.|+|+|...+|.+|..++..+++......
T Consensus 151 ~V~IrG~~~nv~~akeA~~~Ll~~l~~~e--------------------------------------------------- 179 (376)
T 3n89_A 151 YLRITAREKNQHELIEAAKRLNEILFRES--------------------------------------------------- 179 (376)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred EEEEEcChhhHHHHHHHHHHHHHHHHhhh---------------------------------------------------
Confidence 79999999776665555544443310000
Q ss_pred CCCCCCCCCCCceEEEEEeeecCccccccccCc--hhhHhhhhhcCCeEEecCCCCC----CCceeEEecCcchhhhhhh
Q 009489 271 LYSAPRDDLSSKEFSLRLVCPVANIGGVIGKGG--AIINQIRQESGAAIKVDSSSTE----GDDCLITVSSKEFFEDTLS 344 (533)
Q Consensus 271 ~~~~p~~~~~~~~~~~~v~vp~~~~g~IIGk~G--~~Ik~i~~~tga~I~i~~~~~~----~~ervi~I~G~~~~~~~~~ 344 (533)
......+++.|.|+.++|..|||++| ..|++|+++|||+|.+++.... .....|+|+|++ +.+.
T Consensus 180 -------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~---e~V~ 249 (376)
T 3n89_A 180 -------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI---DNVL 249 (376)
T ss_dssp -------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH---HHHH
T ss_pred -------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH---HHHH
Confidence 00123478999999999999999999 5669999999999999975331 234689999976 3444
Q ss_pred HHHHHHHHhCcccccccccccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCC----c
Q 009489 345 ATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDD----E 420 (533)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~----r 420 (533)
.+...+..+.| +...|.++.+.+-.-.-.--..|..+.++.++.|.|..+...|.. --++ .
T Consensus 250 ~Ark~I~~lLP--------------v~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~ 314 (376)
T 3n89_A 250 KARRYIMDLLP--------------ISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPAD-LLSGEVPLN 314 (376)
T ss_dssp HHHHHHHHTSE--------------EEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSS-SSCCCEEEE
T ss_pred HHHHHHHhhCC--------------EEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchh-hcccccccc
Confidence 45555555543 444555544322222222223334455788999988654322310 0111 3
Q ss_pred EEEEEeCH---HHHHHHHHH
Q 009489 421 MVQISGDL---DLAKDALIQ 437 (533)
Q Consensus 421 ~V~I~G~~---~~v~~A~~~ 437 (533)
.|.|.+-. .++.+|...
T Consensus 315 ~~~~~s~e~n~~~~y~~~~~ 334 (376)
T 3n89_A 315 CASLRSKEFNIKKLYTAYQK 334 (376)
T ss_dssp EEEEEEEGGGHHHHHHHHHH
T ss_pred eEEEEEEeccHHHHHHHHHH
Confidence 47788754 444445433
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.72 E-value=1.3e-17 Score=147.96 Aligned_cols=136 Identities=18% Similarity=0.286 Sum_probs=100.2
Q ss_pred ceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEEc-CCccccccccCcccCCHHHHHHHHHH
Q 009489 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYS-ASDETNAFEDGDKFVSPAQDALFKVH 120 (533)
Q Consensus 42 ~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G-~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (533)
.++.+++||.+.+|++||++|++|++|++++| |++.+.. ..+++ +++.+ .++. +..+.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~-~i~~~~~p~~-----------------v~~~~ 61 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCT-FHIYGEDQDA-----------------VKKAR 61 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTE-EEEEESSHHH-----------------HHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchh-eeeccCCHHH-----------------HHHHH
Confidence 46789999999999999999999999999999 5443221 12233 44444 3332 22221
Q ss_pred HHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCc-eEEEeecCCCCcccCCCCc--eEEEEcC
Q 009489 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA-QIRILKDEHLPSCALRSDE--LVQISGE 197 (533)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~dr--~v~I~G~ 197 (533)
. +.. ..+.++.||.+++|++|||+|++||.|++.||| +|+|.++++... ...++ .|+|+|+
T Consensus 62 ~-~l~-------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~ 125 (144)
T 2qnd_A 62 S-FLE-------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGT 125 (144)
T ss_dssp H-HHC-------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEE
T ss_pred H-hhh-------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeC
Confidence 1 110 113889999999999999999999999999997 999988643211 12344 4899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009489 198 ASVVKKALCQIASRLHD 214 (533)
Q Consensus 198 ~~~V~~A~~~I~~~l~~ 214 (533)
+++|..|..+|.++|..
T Consensus 126 ~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 126 KDSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.71 E-value=1.1e-17 Score=148.51 Aligned_cols=137 Identities=19% Similarity=0.279 Sum_probs=98.5
Q ss_pred eEEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccccc
Q 009489 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362 (533)
Q Consensus 283 ~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (533)
.++.+|.||.+.+|.+||++|++|++|++++| |.+.....+ ++. +.+.+... + .+..+..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~-~~~-~i~~~~~p--~----~v~~~~~~l~------- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED-TCT-FHIYGEDQ--D----AVKKARSFLE------- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT-TTE-EEEEESSH--H----HHHHHHHHHC-------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC-chh-eeeccCCH--H----HHHHHHHhhh-------
Confidence 46889999999999999999999999999999 444322221 333 33443210 1 1111111100
Q ss_pred cccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCc-eEEEecCCCCCCCCCCCCc--EEEEEeCHHHHHHHHHHHH
Q 009489 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKA-NIRILPKENLPKIASEDDE--MVQISGDLDLAKDALIQVM 439 (533)
Q Consensus 363 ~~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga-~I~i~~~~~~P~~~~~~~r--~V~I~G~~~~v~~A~~~I~ 439 (533)
.....+.||.+++|++|||+|++|+.|++.||| +|.|.+.++... ..+++ .|+|+|++++|+.|+.+|.
T Consensus 66 ------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~ 137 (144)
T 2qnd_A 66 ------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLD 137 (144)
T ss_dssp ------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHH
Confidence 113789999999999999999999999999997 999986543210 12344 4899999999999999999
Q ss_pred HHHHh
Q 009489 440 TRLRA 444 (533)
Q Consensus 440 ~~l~~ 444 (533)
++|.+
T Consensus 138 ~~l~~ 142 (144)
T 2qnd_A 138 YHLNY 142 (144)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99864
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.60 E-value=1.1e-15 Score=144.09 Aligned_cols=141 Identities=21% Similarity=0.198 Sum_probs=102.6
Q ss_pred EEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHH
Q 009489 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123 (533)
Q Consensus 44 ~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i 123 (533)
..++.||.+.+|.|||++|++|+.|+++|||+|+|+.. ++.|+|.+....-+ ...+++|...|...+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d--------~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETED--------PLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCS--------HHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCC--------HHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999732 56799998752100 112445555554432
Q ss_pred H----H--hhccCCCCCCCCCceEEEEEec-----C------CceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccC
Q 009489 124 I----A--EELRGDEDSDGGHQVTAKLLVP-----S------DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (533)
Q Consensus 124 ~----~--~~~~~~~~~~~~~~~~~~llVp-----~------~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (533)
. + ..+.. +....-.+.++ . ..+|+||||+|.||+.|++.|||+|.|.
T Consensus 102 rg~~~e~g~~ll~------dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~---------- 165 (219)
T 2e3u_A 102 RGFSPERAFRLLN------EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY---------- 165 (219)
T ss_dssp TTCCHHHHGGGGS------TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----------
T ss_pred ccCCccccceecc------CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----------
Confidence 1 0 11110 11111123332 1 2689999999999999999999999984
Q ss_pred CCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 187 RSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 187 ~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
++.|+|.|+.++|+.|..+|.++|...
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999663
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.59 E-value=3.5e-15 Score=140.72 Aligned_cols=68 Identities=25% Similarity=0.241 Sum_probs=58.4
Q ss_pred CCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcC-----HHHHHHHHHHHHHH
Q 009489 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGE-----ASVVKKALCQIASR 211 (533)
Q Consensus 137 ~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~-----~~~V~~A~~~I~~~ 211 (533)
..+....+.||.+.++.|||++|.+|+.|+++|||+|++..+ ++.|+|.++ ++++.+|...|.++
T Consensus 31 ~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----------~g~V~I~~~~~t~d~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 31 FFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE----------TGEVWITSTKETEDPLAVWKARDIVLAI 100 (219)
T ss_dssp --CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT----------TCEEEEEECTTCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC----------CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 345567999999999999999999999999999999999632 577888876 69999999999998
Q ss_pred Hhc
Q 009489 212 LHD 214 (533)
Q Consensus 212 l~~ 214 (533)
++.
T Consensus 101 ~rg 103 (219)
T 2e3u_A 101 GRG 103 (219)
T ss_dssp HTT
T ss_pred hcc
Confidence 754
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=1.4e-14 Score=114.04 Aligned_cols=74 Identities=26% Similarity=0.431 Sum_probs=64.1
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHh
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 444 (533)
..+.+|.||.+++|+||||+|++|++|++.|||+|.|.+.++. .++++++.|+|+|++++++.|+.+|.+.+.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999764322 1246789999999999999999999988764
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.51 E-value=1e-14 Score=113.70 Aligned_cols=70 Identities=24% Similarity=0.460 Sum_probs=63.7
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
.++.+|+||.+++|+||||+|++|++|+++|||+|.|.+. +..+|+|+|+|+++++..|+.+|.++|+++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 6889999999999999999999999999999999999642 246899999999999999999999999863
No 19
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=121.27 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=64.4
Q ss_pred eeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 370 ~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
.+.+|+||.+++|+||||+|++||+|+++|||+|+|.+. ..| ..+.++++|+|+|++++|+.|+.+|.++|.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~-~~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQ-LPP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCC-CCT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCc-cCC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 378999999999999999999999999999999999653 222 23457899999999999999999999988753
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=113.73 Aligned_cols=72 Identities=29% Similarity=0.521 Sum_probs=65.3
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
.++.+|.||.+++|+||||+|++|++|++.|||+|.|.+. .++++++.|+|+|++++++.|+.+|.+.++++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 6889999999999999999999999999999999999642 23577899999999999999999999998764
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.50 E-value=1.8e-14 Score=112.29 Aligned_cols=70 Identities=29% Similarity=0.571 Sum_probs=64.8
Q ss_pred CceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 138 ~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.++ +..+|+|+|+|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999864 24589999999999999999999999976
No 22
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.50 E-value=4.2e-14 Score=112.91 Aligned_cols=73 Identities=27% Similarity=0.473 Sum_probs=65.4
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
..++.+|.||.+++|+||||+|++|++|+++|||+|.|.+. . ++++++.|+|+|++++++.|+.+|.+++++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--L---EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--T---SCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--C---CCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 36889999999999999999999999999999999999642 2 2467899999999999999999999999864
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=2.4e-14 Score=114.37 Aligned_cols=73 Identities=29% Similarity=0.487 Sum_probs=64.6
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
..++.+|.||.+++|+||||+|++|++|+++|||+|.|.+. .++++++.|+|+|++++++.|+.+|.+.+.++
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 36889999999999999999999999999999999999642 23567899999999999999999999998765
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=2.3e-14 Score=115.79 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=68.3
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhcccc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFD 448 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~~ 448 (533)
..+.+|.||.+++|+||||+|++|++|++.|||+|.|.+.++. .++++++.|+|+|++++++.|+.+|.+.|.+...+
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 3678999999999999999999999999999999999764321 12467899999999999999999999999887654
Q ss_pred c
Q 009489 449 R 449 (533)
Q Consensus 449 ~ 449 (533)
+
T Consensus 80 r 80 (87)
T 1ec6_A 80 R 80 (87)
T ss_dssp H
T ss_pred c
Confidence 4
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.45 E-value=5.8e-14 Score=113.88 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=66.3
Q ss_pred CcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 367 ~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+. .| +++++.|+|+|++++++.|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999999642 22 467899999999999999999999999864
No 26
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.44 E-value=1.1e-13 Score=108.93 Aligned_cols=74 Identities=26% Similarity=0.440 Sum_probs=64.6
Q ss_pred ceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 139 ~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.++.+.. .++.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999998753321 246789999999999999999999998864
No 27
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=110.19 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=64.5
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHh
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 444 (533)
...+.+|.||.+++|+||||+|++||+|+++|||+|.|.+.... ..+.+|.|+|+|++++++.|+.+|.+.+++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999999999764221 246788999999999999999999988753
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.7e-14 Score=112.26 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=61.5
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHH
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLR 443 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~ 443 (533)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|+++ +++++|+|+|++++++.|+.+|.+.+.
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999643 235799999999999999999998765
No 29
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=1.5e-13 Score=109.70 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=65.4
Q ss_pred CCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 137 ~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999999999999763 12467999999999999999999999999774
No 30
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.42 E-value=1.9e-13 Score=111.43 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=65.4
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
..++.+|.||.+++|+||||+|++|++|+++|||+|.|.... .+..+++|+|+|++++|+.|+.+|.++|++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-----GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 368899999999999999999999999999999999996431 2356899999999999999999999999874
No 31
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.42 E-value=1.1e-13 Score=113.48 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=66.4
Q ss_pred CcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 367 ~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
+..++.+|+||.+++|+||||+|++||+|+++|||+|.|.+... + ...++|.|+|+|++++|+.|+.+|.++|++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-Q--NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-C--SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC-C--CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999999975422 1 1347899999999999999999999998753
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.42 E-value=2.9e-13 Score=108.01 Aligned_cols=72 Identities=31% Similarity=0.567 Sum_probs=65.2
Q ss_pred CceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 138 ~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
..++++|+||.++++.||||+|++|++|+++|||+|+|.+. .+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999753 12 35789999999999999999999999976
No 33
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.42 E-value=1.6e-13 Score=126.13 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=100.9
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHH
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~ 124 (533)
++++||...+|.|||++|++++.|+++++|+|.++. .++.|+|+......+ ....++|...|.....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~d--------p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIP--------PVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSC--------HHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCC--------HHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999964 377889985432211 1113444433322111
Q ss_pred ----HhhccCCCCCCCCCceEEE-EEec----------CCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCC
Q 009489 125 ----AEELRGDEDSDGGHQVTAK-LLVP----------SDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189 (533)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~-llVp----------~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~d 189 (533)
++.+. -..+.+.+. +-++ ....|+||||+|.||+.|+..|||+|.|. +
T Consensus 73 gf~~e~A~~-----Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~ 135 (191)
T 1tua_A 73 GFPPEKAFR-----LLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------E 135 (191)
T ss_dssp TCCHHHHGG-----GGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------S
T ss_pred CCCHHHhhh-----cccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------C
Confidence 00010 001122233 3344 23589999999999999999999999984 3
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 190 ELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 190 r~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
+.|.|.|+.++++.|...|.+++..
T Consensus 136 ~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 136 YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999965
No 34
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=108.12 Aligned_cols=72 Identities=35% Similarity=0.588 Sum_probs=65.5
Q ss_pred CceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 138 ~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999763 2246799999999999999999999999876
No 35
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=113.03 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=63.6
Q ss_pred eeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhcc
Q 009489 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (533)
Q Consensus 370 ~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (533)
.+.+|.||.+++|+||||+|++||+|+++|+|+|+|.+.+ ....+|+|+|+|++++++.|+.+|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-----GTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-----CCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999996432 23568899999999999999999999998754
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.39 E-value=7.1e-13 Score=106.47 Aligned_cols=75 Identities=21% Similarity=0.475 Sum_probs=65.8
Q ss_pred CCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 137 ~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
......+|.||.+.+|.||||+|++||+|+++|||+|.|.++...+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3457899999999999999999999999999999999998753322 36789999999999999999999998854
No 37
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.38 E-value=1.1e-12 Score=120.39 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=58.4
Q ss_pred EEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEE-----cCHHHHHHHHHHHHHHHhcC
Q 009489 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQIS-----GEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 142 ~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~-----G~~~~V~~A~~~I~~~l~~~ 215 (533)
.+++||.+.+|.|||++|++++.|++++|++|++... ++.|+|. |++.++.+|...|..+.+.+
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE----------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999643 6788888 99999999999999888764
No 38
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=2.7e-13 Score=109.51 Aligned_cols=75 Identities=25% Similarity=0.438 Sum_probs=65.9
Q ss_pred ceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 139 ~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
.++++|+||.+++|.||||+|++|++|+++|||+|+|.++.+.. .++.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999999999999998753321 1367899999999999999999999999773
No 39
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.37 E-value=5.9e-13 Score=111.18 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=66.0
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhcc
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (533)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|.+... + ..++++.|+|+|++++++.|+.+|.+++.++.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3678999999999999999999999999999999999965321 1 12358999999999999999999999997765
No 40
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.36 E-value=6.6e-13 Score=108.26 Aligned_cols=74 Identities=23% Similarity=0.418 Sum_probs=66.7
Q ss_pred CCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 137 ~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
...++++|+||.++++.||||+|++|++|+++|||+|+|.++.. ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999976431 246899999999999999999999999874
No 41
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.36 E-value=4.7e-13 Score=108.46 Aligned_cols=74 Identities=32% Similarity=0.611 Sum_probs=66.6
Q ss_pred CCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 136 ~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
....++++|+||.++++.||||+|++||+|+++|||+|+|.+. .+ .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999753 22 36789999999999999999999999977
No 42
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=107.51 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.1
Q ss_pred CCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 136 ~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
.....+++|.||.+++|+||||+|++||+|+++|||+|+|.+. ..+++|+|+|++++|++|+.+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4467899999999999999999999999999999999999764 2378999999999999999999998764
No 43
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.35 E-value=4.7e-13 Score=109.59 Aligned_cols=77 Identities=22% Similarity=0.502 Sum_probs=67.9
Q ss_pred CCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 136 ~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
....++.+|+||.+++++||||+|++||+|+++|||+|+|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999999998753221 246899999999999999999999999773
No 44
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=8.9e-13 Score=110.56 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.3
Q ss_pred EEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 141 ~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
+++|+||.++++.||||+|++||+|+++|||+|+|.++.. + .....++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999986532 1 12346799999999999999999999999874
No 45
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.34 E-value=7.4e-13 Score=110.55 Aligned_cols=80 Identities=28% Similarity=0.430 Sum_probs=68.9
Q ss_pred CCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 136 ~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
...+++++|+||.+++|.||||+|++||+|+++|||+|+|.+..... .+.++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT---LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC---CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 45678999999999999999999999999999999999998653211 235899999999999999999999999875
Q ss_pred CCC
Q 009489 216 PSR 218 (533)
Q Consensus 216 ~~~ 218 (533)
+..
T Consensus 88 ~~~ 90 (104)
T 1we8_A 88 EEL 90 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 46
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=109.02 Aligned_cols=71 Identities=23% Similarity=0.462 Sum_probs=63.1
Q ss_pred ceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 139 ~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
..+++|+||.++++.||||+|++||+|+++|||+|+|.++.. ...+|.|+|+|++++|++|+.+|.+++.+
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999976432 24689999999999999999999999977
No 47
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=2.1e-12 Score=105.70 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=65.2
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhccc
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF 447 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~ 447 (533)
..++..|.||.+++|+|||++|++|++|+++|||+|.|+... +.+++.|+|+|++++++.|+.+|..++++...
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999995431 23467999999999999999999999887653
No 48
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=2.1e-12 Score=105.65 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=62.7
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
.++.+|.||.+++|.|||++|++||+|+++|||+|.|++.+ +.++.|+|+|++++++.|+.+|.+.+.+.
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 68999999999999999999999999999999999996421 23569999999999999999999998764
No 49
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=4.9e-12 Score=103.96 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=64.0
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
.++..|.||.+++|.||||+|++|++|+++|||+|.|++... | ...++.|+|+|+++++..|+.+|...+.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999965322 2 235789999999999999999999988653
No 50
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.29 E-value=1.8e-12 Score=100.26 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=58.8
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHH
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTR 441 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~ 441 (533)
..+..|.||.+++|.|||++|++|++|+++|||+|.|++. ++.++.|+|+|++++++.|+.+|.+.
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD-------SEKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC-------CSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC-------CCcccEEEEEcCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999642 13567999999999999999999764
No 51
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.27 E-value=3e-12 Score=98.96 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=60.7
Q ss_pred CceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009489 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (533)
Q Consensus 138 ~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l 212 (533)
...+..|.||.++++.|||++|++|++|+++|||+|+|+++. ..++.|+|+|..++|.+|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999997642 24689999999999999999998764
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=5.6e-12 Score=103.10 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=65.9
Q ss_pred CCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 135 ~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
+....++..|.||.++++.|||++|++|++|+++|||+|+|.++.. ..++.|+|+|.+++|.+|+.+|.+++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999999976422 2467999999999999999999998876
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=4.7e-12 Score=103.59 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=65.7
Q ss_pred CCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 135 ~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
.....++..|.||.++++.|||++|++||+|+++|||+|+|.+.+ ..++.|+|+|++++|.+|+.+|.+++.+
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999997642 2367999999999999999999999877
Q ss_pred C
Q 009489 215 N 215 (533)
Q Consensus 215 ~ 215 (533)
.
T Consensus 85 ~ 85 (94)
T 2cte_A 85 Q 85 (94)
T ss_dssp H
T ss_pred c
Confidence 3
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=1.3e-11 Score=101.45 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=64.0
Q ss_pred ceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 139 ~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
..++.|.||.++++.||||+|++|++|+++|||+|+|.++.. + ...++.|+|+|..++|.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999987532 2 13578999999999999999999998866
No 55
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.5e-11 Score=102.28 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=62.5
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhcc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (533)
..+..|.||.+++|.|||+||++|++|+++|||+|.|++.. ...+.|+|+|++++++.|+.+|.+.+++..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 57889999999999999999999999999999999996431 234589999999999999999999887654
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=3.5e-11 Score=100.06 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=62.9
Q ss_pred CceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 138 ~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
.+.+..|.||.++++.|||++|++|++|+++|||+|+|.++. ...+.|+|+|..++|.+|+.+|..++.+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 458899999999999999999999999999999999997642 2346899999999999999999998876
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1.2e-10 Score=95.01 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=62.9
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhc-CceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLT-KANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~t-ga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
..++..|.||.++++.|||++|.+|++|+++| ||+|.|+.. ++..+.|+|.|+.++++.|+.+|.+.+.+.
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 36899999999999999999999999999999 999999532 234568999999999999999999998764
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=2.2e-10 Score=94.76 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=60.3
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHh-cCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhcc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRL-TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~-tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (533)
.++.+|.||+.+|++|||++|++|++|+++ ++++|.+++ .++.|+|+|+++.|..|+.+|.+.+++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999996 599999842 34589999999999999999999887643
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=1.1e-10 Score=95.33 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCCceEEEEEecCCceeeeeccCchHHHHHHhhc-CceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHh
Q 009489 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSET-GAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLH 213 (533)
Q Consensus 135 ~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~ 213 (533)
+..+.++..|.||.++++.|||++|.+|++|+++| ||+|+|+++ ++..+.|+|+|..++|++|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999 999999764 2346689999999999999999999987
Q ss_pred c
Q 009489 214 D 214 (533)
Q Consensus 214 ~ 214 (533)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.01 E-value=3.7e-10 Score=93.41 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=60.2
Q ss_pred ceEEEEEecCCceeeeeccCchHHHHHHhh-cCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSE-TGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 139 ~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
.++..|.||..++++|||++|++|++|+++ ++++|+|+++ ++.|+|+|+++.|.+|..+|..++.+
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 5899998652 56899999999999999999998876
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=1.8e-09 Score=86.36 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=56.0
Q ss_pred cceeEEEeecCCceeEEecCCChhHHHHHHhcCce-EEEecCCCCCCCCCCCCcEEEEEe-CHHHHHHHHHHHHH
Q 009489 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN-IRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMT 440 (533)
Q Consensus 368 ~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~-I~i~~~~~~P~~~~~~~r~V~I~G-~~~~v~~A~~~I~~ 440 (533)
..+...|.||.+++|.|||++|.+|++|+++|||+ |.|. +++.+|+|.| +.++++.|+.+|..
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~----------eddG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD----------EDTGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHHSC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE----------cCCCEEEEEECCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999998 9994 2347999999 79999999888854
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.74 E-value=7.3e-09 Score=82.82 Aligned_cols=65 Identities=26% Similarity=0.329 Sum_probs=57.2
Q ss_pred CCCceEEEEEecCCceeeeeccCchHHHHHHhhcCce-EEEeecCCCCcccCCCCceEEEEc-CHHHHHHHHHHHHH
Q 009489 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQ-IRILKDEHLPSCALRSDELVQISG-EASVVKKALCQIAS 210 (533)
Q Consensus 136 ~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~dr~v~I~G-~~~~V~~A~~~I~~ 210 (533)
....+...|.||.++++.|||++|.+|++|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHh
Confidence 3456889999999999999999999999999999998 99953 258899999 78999999887754
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=1.3e-07 Score=81.54 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=61.2
Q ss_pred ceeEEEeecCC------ceeEEecCCChhHHHHHHhcCceEEEecCCCC-----------CCCCCCCCcEEEEEe-CHHH
Q 009489 369 SFTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENL-----------PKIASEDDEMVQISG-DLDL 430 (533)
Q Consensus 369 ~~~~~l~Vp~~------~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~-----------P~~~~~~~r~V~I~G-~~~~ 430 (533)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... +......+-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 57889999987 88999999999999999999999999764211 111122355799999 5899
Q ss_pred HHHHHHHHHHHHHh
Q 009489 431 AKDALIQVMTRLRA 444 (533)
Q Consensus 431 v~~A~~~I~~~l~~ 444 (533)
++.|+.+|..+|..
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999865
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=3.7e-07 Score=77.11 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=57.7
Q ss_pred ceeEEEeecCC-------ceeEEecCCChhHHHHHHhcCceEEEecCCCC---CC-C-CCCCCcEEEEEe-CHHHHHHHH
Q 009489 369 SFTTRLLVPTS-------RIGCLIGKGGSIITEMRRLTKANIRILPKENL---PK-I-ASEDDEMVQISG-DLDLAKDAL 435 (533)
Q Consensus 369 ~~~~~l~Vp~~-------~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---P~-~-~~~~~r~V~I~G-~~~~v~~A~ 435 (533)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... +. . ...++-.|.|.+ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46677887764 77999999999999999999999999643210 10 0 112334688886 599999999
Q ss_pred HHHHHHHHhc
Q 009489 436 IQVMTRLRAN 445 (533)
Q Consensus 436 ~~I~~~l~~~ 445 (533)
.+|.++|...
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999988753
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.44 E-value=4.8e-07 Score=78.02 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=61.2
Q ss_pred CceEEEEEecCC------ceeeeeccCchHHHHHHhhcCceEEEeecCCCCc-----------ccCCCCceEEEEc-CHH
Q 009489 138 HQVTAKLLVPSD------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS-----------CALRSDELVQISG-EAS 199 (533)
Q Consensus 138 ~~~~~~llVp~~------~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~-----------~~~~~dr~v~I~G-~~~ 199 (533)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|........ .....+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467899999988 7789999999999999999999999976321100 0012356788998 578
Q ss_pred HHHHHHHHHHHHHhc
Q 009489 200 VVKKALCQIASRLHD 214 (533)
Q Consensus 200 ~V~~A~~~I~~~l~~ 214 (533)
.+.+|+.+|.++|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=5.3e-07 Score=76.11 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=57.7
Q ss_pred CceEEEEEecCC-------ceeeeeccCchHHHHHHhhcCceEEEeecCCC-----CcccCCCCceEEEEc-CHHHHHHH
Q 009489 138 HQVTAKLLVPSD-------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-----PSCALRSDELVQISG-EASVVKKA 204 (533)
Q Consensus 138 ~~~~~~llVp~~-------~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~-----p~~~~~~dr~v~I~G-~~~~V~~A 204 (533)
..++.+|.||-+ .++.|||++|.+||+|+++|||+|.|..+... .......+-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 356788888865 67999999999999999999999999643110 000011344677775 58999999
Q ss_pred HHHHHHHHhc
Q 009489 205 LCQIASRLHD 214 (533)
Q Consensus 205 ~~~I~~~l~~ 214 (533)
+.+|.++|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 67
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.18 E-value=1.7e-06 Score=93.54 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=73.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccC
Q 009489 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (533)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (533)
+.+..|.+++..|++.+.+.............+....|.||.+.++.|||++|.+||+|+++|||+|.|.+
T Consensus 534 ~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------- 604 (630)
T 3u1k_A 534 EAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------
Confidence 34667788888888776544433323334455678899999999999999999999999999999999853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009489 187 RSDELVQISGE-ASVVKKALCQIASRL 212 (533)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l 212 (533)
+..|.|.|. .+++.+|+..|.+++
T Consensus 605 --~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 --EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp --SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 568999987 578999988886654
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.07 E-value=2.7e-06 Score=73.63 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=54.3
Q ss_pred eeEEEeecC------CceeEEecCCChhHHHHHHhcCceEEEecCCCC------------CCCC-CCCCcEEEEEeC-HH
Q 009489 370 FTTRLLVPT------SRIGCLIGKGGSIITEMRRLTKANIRILPKENL------------PKIA-SEDDEMVQISGD-LD 429 (533)
Q Consensus 370 ~~~~l~Vp~------~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~------------P~~~-~~~~r~V~I~G~-~~ 429 (533)
++.+|.||. +++|.|||++|.++|+|+++|||+|.|..+... |... .+++=-|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 566788885 458999999999999999999999999765311 1000 112236889984 43
Q ss_pred -----HHHHHHHHHHHHHH
Q 009489 430 -----LAKDALIQVMTRLR 443 (533)
Q Consensus 430 -----~v~~A~~~I~~~l~ 443 (533)
.+..|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999988775
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.05 E-value=3.2e-06 Score=73.20 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=55.6
Q ss_pred eEEEEEecCCc------eeeeeccCchHHHHHHhhcCceEEEeecCCCC------------ccc-CCCCceEEEEcCH-H
Q 009489 140 VTAKLLVPSDQ------IGCVIGKGGQIVQNIRSETGAQIRILKDEHLP------------SCA-LRSDELVQISGEA-S 199 (533)
Q Consensus 140 ~~~~llVp~~~------~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~~-~~~dr~v~I~G~~-~ 199 (533)
++.+|.||-+. +|.|||++|.++|+|+++|||+|.|..+...- ... ...+--|.|++.. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788888655 89999999999999999999999998643110 000 1122367888843 2
Q ss_pred -----HHHHHHHHHHHHHhc
Q 009489 200 -----VVKKALCQIASRLHD 214 (533)
Q Consensus 200 -----~V~~A~~~I~~~l~~ 214 (533)
.+.+|+.+|.++|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 789999999998865
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.79 E-value=1e-05 Score=87.46 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=54.2
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHH
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 442 (533)
.....|.||.+.+|.|||+||.+||+|+++|||+|.|. ++..|.|.|+ .+.+++|+.+|.+.+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999993 3458999997 688999998886543
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.68 E-value=6.4e-05 Score=63.63 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=59.3
Q ss_pred eeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 370 ~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
-...+.|....++.|||++|+.|++|+..|+|.|+|..-+ .+..-.|+|.|++..-..|+.+|.....-+
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999996432 134567999999999999999998776544
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.62 E-value=2.4e-05 Score=85.56 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=29.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccC
Q 009489 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (533)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (533)
+.+..|.+++..|++.+.+.............+....+.||.+.++.|||++|.+||+|.++|||+|.|..
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------- 607 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------
Confidence 34667788888888766543322222233344567889999999999999999999999999999999853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHhc
Q 009489 187 RSDELVQISGE-ASVVKKALCQIASRLHD 214 (533)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l~~ 214 (533)
+..|.|.+. .+++++|+..|..++.+
T Consensus 608 --dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 608 --DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --------CCSCHHHHHHHHHC-------
T ss_pred --CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 456788775 78899999888887754
No 73
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.48 E-value=1.3e-05 Score=69.79 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=71.8
Q ss_pred eEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHH
Q 009489 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDR 122 (533)
Q Consensus 43 ~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~ 122 (533)
=.+.++|+...+|..||++|++|+.|+++.|-+|+|-+- +..++. .+...
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~-----------s~d~~~-------------------fI~na 85 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY-----------SSDLER-------------------IVKNL 85 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC-----------CSSHHH-------------------HHHHH
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc-----------CCCHHH-------------------HHHHh
Confidence 346889999999999999999999999999999986322 111100 11111
Q ss_pred HHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEee
Q 009489 123 VIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILK 177 (533)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~ 177 (533)
+.-..+..-.-...+......+.||.++.+..|||+|++++-...-||.+|.|..
T Consensus 86 LsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 86 FPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp STTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred cCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 1000000000000023567889999999999999999999999999999887743
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.17 E-value=0.00017 Score=62.75 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=73.7
Q ss_pred EEEEEeeecCccccccccCchhhHhhhhhcCCeEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCccccccccc
Q 009489 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER 363 (533)
Q Consensus 284 ~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (533)
-.+.+.|+...+|..||++|++|+.|+++.|-+|.+-.-+.+ + .+++ ..+ +.|--.....-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-~--------~~fI--------~na--LsPA~V~~V~i 96 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-L--------ERIV--------KNL--FPGVKIESINV 96 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-H--------HHHH--------HHH--STTSCEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-H--------HHHH--------HHh--cCCceEEEEEE
Confidence 377899999999999999999999999999999977654322 0 0111 111 11111101110
Q ss_pred ccCCcceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEe
Q 009489 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRIL 406 (533)
Q Consensus 364 ~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~ 406 (533)
...+......+.||.++.+..|||+|.+++-..+.||.+|.|.
T Consensus 97 ~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 97 RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0002246788999999999999999999999999999988874
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.14 E-value=0.00074 Score=57.19 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=58.5
Q ss_pred EEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 142 ~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
+.|.|....++.|+|++|+.|+.|+..|++.|++..-+. +..--|+|.|++..=.+|+.+|..+..-
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999976422 3466799999999999999998887654
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.10 E-value=0.00014 Score=79.57 Aligned_cols=67 Identities=27% Similarity=0.336 Sum_probs=12.4
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHHHhcc
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRLRANL 446 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l~~~~ 446 (533)
.....+.||.+.++.|||+||.+||+|.++||++|.|. ++..|.|.+. .++++.|+.+|...+.+..
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDGVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 45678999999999999999999999999999999983 2347888876 8899999999988776543
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.06 E-value=0.0076 Score=57.01 Aligned_cols=98 Identities=23% Similarity=0.209 Sum_probs=63.9
Q ss_pred CccceeecCCcHHHHHH-HHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhhccC
Q 009489 52 RKIGSIIGRGGEIVKQL-RIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (533)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i-~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (533)
+-+|+-||++|++|+.| ++-.|=+|.|-.- +-.+ ...+...+.-..+..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-----------s~dp-------------------~~fi~nalsPA~V~~ 175 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-----------DDDP-------------------ARFVANALSPAKVVS 175 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-----------CSSH-------------------HHHHHHHTTTSCCSE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEe-----------cCCH-------------------HHHHHhccCCcceEE
Confidence 45899999999999999 5667888876322 1001 001111111000000
Q ss_pred CCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCC
Q 009489 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (533)
Q Consensus 131 ~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (533)
- .........+.+.||.++.+..|||+|++++-...-||.+|.|....+
T Consensus 176 V-~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 176 V-SVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp E-EEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred E-EEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0 000011246889999999999999999999999999999999987543
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.80 E-value=0.0043 Score=62.10 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=65.4
Q ss_pred CccceeecCCcHHHHHHHHHh-CCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhhccC
Q 009489 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (533)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (533)
+-+|..||++|++|+.|.++- |=+|.|-+- .. + ....+...+.-..+..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~------------s~--d----------------p~~fi~nalsPA~V~~ 298 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY------------DD--D----------------PARFVANALSPAKVVS 298 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC------------CS--S----------------HHHHHHHHTTTSCCSE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc------------CC--C----------------HHHHHHHhcCCcceeE
Confidence 468999999999999999998 888875321 10 0 0011111111000000
Q ss_pred CCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCC
Q 009489 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (533)
Q Consensus 131 ~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (533)
- ..-......+.+.||..+.+..|||+|.+++-...-||.+|.|....+
T Consensus 299 V-~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 299 V-SVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp E-EEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred E-EEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 0 000011346889999999999999999999999999999999987643
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.75 E-value=0.0028 Score=69.64 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=13.5
Q ss_pred ccCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccC
Q 009489 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (533)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (533)
+.+..|.++...|++.+.+.............+....+.||.+.++.+||++|.+|+.|.++||+.|.|..
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------- 597 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------
Confidence 34566777777777765543322222223345567788999999999999999999999999999998843
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHh
Q 009489 187 RSDELVQISGE-ASVVKKALCQIASRLH 213 (533)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l~ 213 (533)
+..|.|.+. .+.+++|...|..++.
T Consensus 598 --dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 --DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------
T ss_pred --CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 456777664 4667777776666553
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.08 E-value=0.02 Score=54.16 Aligned_cols=97 Identities=24% Similarity=0.288 Sum_probs=64.2
Q ss_pred CccccccccCchhhHhh-hhhcCCeEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccccccccCCccee
Q 009489 293 ANIGGVIGKGGAIINQI-RQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFT 371 (533)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i-~~~tga~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
+-+|..||++|.+|+.| ++-.|-+|.|-.-+.+ . .+++ ..+ +.|--.....-.. .....
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d---p------~~fi-------~na---lsPA~V~~V~i~~-~~~~~ 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD---P------ARFV-------ANA---LSPAKVVSVSVID-QTARA 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS---H------HHHH-------HHH---TTTSCCSEEEEEE-TTTTE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC---H------HHHH-------Hhc---cCCcceEEEEEEc-CCCcE
Confidence 45799999999999999 5556777777643321 0 0111 111 1111110110000 01256
Q ss_pred EEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCC
Q 009489 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (533)
Q Consensus 372 ~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~ 409 (533)
..+.||..+.+.-|||+|.+++--.+.||.+|.|.+..
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 88999999999999999999999999999999997654
No 81
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.79 E-value=0.0033 Score=69.38 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=38.5
Q ss_pred ccCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccC
Q 009489 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (533)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (533)
+.+..|.++...|++.+.+..... .......+....|.||.+.++.+||++|.+||+|.++|||.|.|..
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------- 635 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------
Confidence 455667778878877665433222 2223334555678899999999999999999999999999998853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009489 187 RSDELVQISGE-ASVVKKALCQIASRL 212 (533)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l 212 (533)
+..|.|... .+..++|...|..+.
T Consensus 636 --dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 --DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred --CceEEEecCCHHHHHHHHHHHHHhc
Confidence 455666654 566666765665543
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.47 E-value=0.035 Score=55.48 Aligned_cols=97 Identities=24% Similarity=0.284 Sum_probs=66.0
Q ss_pred CccccccccCchhhHhhhhhc-CCeEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccccccccCCccee
Q 009489 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFT 371 (533)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
+-+|..||++|.+|+.|.++. |-+|.|-.-+.+ . .+++ ..+ +.|--......- ......
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d---p------~~fi-------~na---lsPA~V~~V~~~-~~~~~~ 308 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD---P------ARFV-------ANA---LSPAKVVSVSVI-DQTARA 308 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS---H------HHHH-------HHH---TTTSCCSEEEEE-ETTTTE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC---H------HHHH-------HHh---cCCcceeEEEEE-cCCCcE
Confidence 468999999999999999999 777776643221 0 0111 111 111111011000 011457
Q ss_pred EEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCC
Q 009489 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (533)
Q Consensus 372 ~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~ 409 (533)
..+.||..+.+..|||+|.+++-..+.||.+|.|.+..
T Consensus 309 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 309 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 88999999999999999999999999999999997643
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.37 E-value=0.0086 Score=65.82 Aligned_cols=65 Identities=28% Similarity=0.360 Sum_probs=0.0
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHHHh
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRLRA 444 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l~~ 444 (533)
.....+.||.+.++.|||+||.+|+.|.++||+.|.|. ++..|.|.+. .+.++.|..+|...+.+
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-----------DDGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEec-----------CCccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 45677899999999999999999999999999999883 2346777765 56777787777665543
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.22 E-value=0.057 Score=53.76 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=63.4
Q ss_pred CccceeecCCcHHHHHHHHHh-CCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhhccC
Q 009489 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (533)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (533)
+-+|+.||.+|.+|+.+.++- |=+|.|-.- +-.+ ...+...+.-..+..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-----------s~d~-------------------~~fi~nal~Pa~v~~ 294 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-----------SDDP-------------------KQLIANALAPATVIE 294 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-----------CSSH-------------------HHHHHHHTCSSCCSE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-----------CCCH-------------------HHHHHHhcCccEEEE
Confidence 458999999999999999997 777765221 1110 011111110000000
Q ss_pred CCCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeec
Q 009489 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKD 178 (533)
Q Consensus 131 ~~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~ 178 (533)
- ....+....+.+.||..+.+..|||+|.+++--..-||.+|.|.+.
T Consensus 295 v-~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 295 V-EILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp E-EEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred E-EEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 0 0001123468899999999999999999999999999999999765
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=92.69 E-value=0.13 Score=51.15 Aligned_cols=96 Identities=30% Similarity=0.397 Sum_probs=64.1
Q ss_pred CccccccccCchhhHhhhhhc-CCeEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccccccccCCccee
Q 009489 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFT 371 (533)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
+-+|..||.+|.+|+.+.++. |-+|.+-.-+.+ .+. -+..++ .|--.....-. ......
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-------------~~~----fi~nal--~Pa~v~~v~~~-d~~~~~ 304 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-------------PKQ----LIANAL--APATVIEVEIL-DKENKA 304 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-------------HHH----HHHHHT--CSSCCSEEEEE-ETTTTE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-------------HHH----HHHHhc--CccEEEEEEEE-cCCCCE
Confidence 457999999999999999998 667665543221 000 111111 11111011000 011457
Q ss_pred EEEeecCCceeEEecCCChhHHHHHHhcCceEEEecC
Q 009489 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK 408 (533)
Q Consensus 372 ~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~ 408 (533)
..+.||..+.+.-|||+|.+++--.+.||.+|.|.+.
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 8899999999999999999999999999999999653
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.64 E-value=0.0075 Score=66.54 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHH
Q 009489 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (533)
Q Consensus 369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 442 (533)
.....+.||.+.+|.|||++|.+||+|++.||+.|.|. .+..|.|... .+..+.|+.+|....
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec-----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 34457889999999999999999999999999999984 1346777775 566667766665544
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=68.79 E-value=1.9 Score=37.45 Aligned_cols=30 Identities=20% Similarity=-0.016 Sum_probs=25.1
Q ss_pred EEEEEecCCccceeecCCcHHHHHHHHHhC
Q 009489 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTK 73 (533)
Q Consensus 44 ~~rilvp~~~~g~IIGk~G~~Ik~i~~~tg 73 (533)
++.+-+-.+..|.+|||.|.|++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 355666788999999999999999997664
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=61.27 E-value=2.8 Score=36.43 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=39.8
Q ss_pred EEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCc-eEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE-LVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 141 ~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr-~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
++.+.+..+..|.||||.|.|++.|+--+..-+ .+.. .-+ .+-+.|=.+.-++.+..+...+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~~--------~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPTY--------GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHHH--------SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhcC--------CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999976653222 1110 011 223344456666666666666654
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=61.27 E-value=2.9 Score=33.02 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=23.4
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHH
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (533)
.++.|....-|.|||++|+.|++|+.+
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 577788888999999999999998765
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=54.01 E-value=4 Score=32.20 Aligned_cols=28 Identities=11% Similarity=0.395 Sum_probs=22.8
Q ss_pred EEEEEecCCceeeeeccCchHHHHHHhh
Q 009489 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSE 168 (533)
Q Consensus 141 ~~~llVp~~~~g~IIGk~G~~Ik~I~~~ 168 (533)
.+++.|....-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 3667777788899999999999887654
No 91
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=52.53 E-value=12 Score=21.38 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=9.8
Q ss_pred CCCcCCCCCCCCCCCCCCCCCccc
Q 009489 4 QRNSYGKRSHSQTDYADHGPNKRR 27 (533)
Q Consensus 4 ~~~~~~~r~~~~~~~~~~~~~~~~ 27 (533)
+|+.++||.+.= |++++...+||
T Consensus 3 rrrrrrkrkrew-dddddppkkrr 25 (28)
T 3ukx_C 3 RRRRRRKRKREW-DDDDDPPKKRR 25 (28)
T ss_dssp ---CCCCCCCCC-CCSSSCCSCCC
T ss_pred hhHHHHHhhccc-ccCCCchhhhh
Confidence 345555666653 33344444444
No 92
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=36.51 E-value=11 Score=36.53 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.7
Q ss_pred CceEEEEEecC-CceeeeeccCchHHHHHHh--------hcCceEEE
Q 009489 138 HQVTAKLLVPS-DQIGCVIGKGGQIVQNIRS--------ETGAQIRI 175 (533)
Q Consensus 138 ~~~~~~llVp~-~~~g~IIGk~G~~Ik~I~~--------~tga~I~i 175 (533)
..+...++|.. ++.+.||||+|++||+|.. -.|++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 34677888884 5889999999999998743 46666654
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=33.54 E-value=12 Score=34.61 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.3
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHHhCCeEE
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIR 77 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~ 77 (533)
+.+.+..+..|.+|||.|+++..||.-+..-++
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 345556778999999999999999988875443
No 94
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=32.92 E-value=94 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 417 EDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 417 ~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
.++-.+.|+|.|++|.+-+..-.++|..+
T Consensus 39 gndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 39 GNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 34557999999999998877777777644
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=29.03 E-value=14 Score=34.30 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=26.9
Q ss_pred EEEEEecCCceeeeeccCchHHHHHHhhcCceE
Q 009489 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQI 173 (533)
Q Consensus 141 ~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I 173 (533)
.+.|.+.....+.||||.|.+++.|+--+..-+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 455666778899999999999999998877444
No 96
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.39 E-value=21 Score=32.67 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=22.7
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHH
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (533)
.++.|....-|.|||++|+.|++|+.+
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 466777788899999999999998754
No 97
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=27.44 E-value=23 Score=33.02 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=24.6
Q ss_pred EEEEEecCCccceeecCCcHHHHHHHHHh
Q 009489 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (533)
Q Consensus 44 ~~rilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (533)
..++.|-...-|.|||++|+.|++|+.+-
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 36778888889999999999999988653
No 98
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.17 E-value=69 Score=29.52 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=42.7
Q ss_pred EEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHH
Q 009489 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQV 438 (533)
Q Consensus 372 ~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I 438 (533)
.-+.++...+..++|+++..++.|.+.+++.|.+- .+-.|=|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-----------~NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-----------QNGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-----------TTSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-----------CCcEEEEeCCchhHHHHHHHH
Confidence 34688999999999999999999999999999983 233677998876444333333
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.76 E-value=17 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=23.6
Q ss_pred eeEEEeecCCceeEEecCCChhHHHHHHh
Q 009489 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (533)
Q Consensus 370 ~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~ 398 (533)
..+++.|....-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34567777788899999999999988654
No 100
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.93 E-value=17 Score=33.26 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=22.0
Q ss_pred eEEEeecCCceeEEecCCChhHHHHHH
Q 009489 371 TTRLLVPTSRIGCLIGKGGSIITEMRR 397 (533)
Q Consensus 371 ~~~l~Vp~~~~G~IIGkgG~~Ik~I~~ 397 (533)
.+++.|....-|.|||++|..|++|+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 356667777789999999999998765
No 101
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=25.86 E-value=18 Score=33.68 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=23.8
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHHh
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (533)
.++.|....-|.|||++|..|++|+.+-
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5777888889999999999999987653
No 102
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.65 E-value=1e+02 Score=28.29 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=42.8
Q ss_pred EEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHH
Q 009489 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIA 209 (533)
Q Consensus 142 ~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~ 209 (533)
+-+-++...+.+++|+++..++.|.+.+++.|-+-. ...|=|.+.......+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHH
Confidence 445777888899999999999999999999997733 345778888765444444443
No 103
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.02 E-value=29 Score=33.51 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=27.6
Q ss_pred ceEEEEEecCC-ccceeecCCcHHHHHHH--------HHhCCeEEE
Q 009489 42 DTVYRYLCPIR-KIGSIIGRGGEIVKQLR--------IDTKSKIRI 78 (533)
Q Consensus 42 ~~~~rilvp~~-~~g~IIGk~G~~Ik~i~--------~~tga~I~i 78 (533)
.+...++|..+ .-+.||||+|+.||+|. +-.+++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35567778776 45678999999999885 346777765
No 104
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=24.85 E-value=21 Score=33.38 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.3
Q ss_pred eeEEEeecCCceeEEecCCChhHHHHHHh
Q 009489 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (533)
Q Consensus 370 ~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~ 398 (533)
..+++.|....-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45677788888899999999999998764
No 105
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.94 E-value=19 Score=33.32 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.6
Q ss_pred EEEEEecCCccceeecCCcHHHHHHHHHh
Q 009489 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (533)
Q Consensus 44 ~~rilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (533)
..++.|....-|.|||++|+.|++|+.+-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 36778888899999999999999987653
No 106
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.94 E-value=17 Score=33.58 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=23.4
Q ss_pred eeEEEeecCCceeEEecCCChhHHHHHHh
Q 009489 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (533)
Q Consensus 370 ~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~ 398 (533)
..+++.|....-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34567777888899999999999987654
No 107
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=22.87 E-value=1.1e+02 Score=28.35 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=42.3
Q ss_pred EEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHH
Q 009489 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQV 438 (533)
Q Consensus 372 ~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~-~~~v~~A~~~I 438 (533)
.-+.++...+..++|+++..++.|.+.+++.|.+-. +..|-|.+. +..+..+...|
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~~~~~ai 206 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEAIAVMAI 206 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHHHHHHHH
Confidence 446889999999999999999999989999999842 347778864 44444443333
No 108
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=22.51 E-value=19 Score=32.82 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.9
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHH
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (533)
.++.|-...-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456666778889999999999998754
No 109
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=22.21 E-value=2e+02 Score=20.51 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009489 188 SDELVQISGEASVVKKALCQIASRLHDN 215 (533)
Q Consensus 188 ~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (533)
+|--+.|+|.+++|++-+..-.+.|.+.
T Consensus 40 ndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4667999999999999887777777663
No 110
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=22.20 E-value=21 Score=34.45 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=25.7
Q ss_pred eEEEEEec-CCceeeeeccCchHHHHHH--------hhcCceEEE
Q 009489 140 VTAKLLVP-SDQIGCVIGKGGQIVQNIR--------SETGAQIRI 175 (533)
Q Consensus 140 ~~~~llVp-~~~~g~IIGk~G~~Ik~I~--------~~tga~I~i 175 (533)
+...+.|. .++.+.||||+|++||+|. +-.|.+|.+
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 44455665 4678999999999999864 345666654
No 111
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.18 E-value=3.3e+02 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred CcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009489 419 DEMVQISGDLDLAKDALIQVMTRLRAN 445 (533)
Q Consensus 419 ~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (533)
+-.+.|+|.|++|.+-+..-.++|..+
T Consensus 123 ~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 123 RLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 346889999999998887777777654
No 112
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.89 E-value=22 Score=33.19 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=24.4
Q ss_pred EEEEEecCCccceeecCCcHHHHHHHHHh
Q 009489 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (533)
Q Consensus 44 ~~rilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (533)
..++.|-...-|.|||++|..|++|+.+-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 35677778889999999999999998763
No 113
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=20.81 E-value=3.4e+02 Score=21.94 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009489 188 SDELVQISGEASVVKKALCQIASRLHD 214 (533)
Q Consensus 188 ~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (533)
++-.+.|+|.+++|++-+..-.+.|..
T Consensus 122 n~l~i~itgvpeqvrkelakeaerl~~ 148 (170)
T 4hhu_A 122 NRLVIVITGVPEQVRKELAKEAERLKA 148 (170)
T ss_dssp SEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 355789999999999988777777765
No 114
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=20.53 E-value=22 Score=33.04 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.0
Q ss_pred EEEEecCCccceeecCCcHHHHHHHHH
Q 009489 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (533)
Q Consensus 45 ~rilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (533)
.++.|-...-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456666778899999999999988754
No 115
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=20.30 E-value=18 Score=33.04 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=24.9
Q ss_pred EEEeecCCceeEEecCCChhHHHHHH----hcCceEEE
Q 009489 372 TRLLVPTSRIGCLIGKGGSIITEMRR----LTKANIRI 405 (533)
Q Consensus 372 ~~l~Vp~~~~G~IIGkgG~~Ik~I~~----~tga~I~i 405 (533)
+++.|....-|.|||++|+.|++|+. .++..+.|
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 44556667778999999999998765 46655444
Done!