Query 009491
Match_columns 533
No_of_seqs 81 out of 83
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 13:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06136 DUF966: Domain of unk 100.0 1E-108 3E-113 829.9 22.7 325 33-429 1-337 (337)
2 PF00778 DIX: DIX domain; Int 98.3 2.7E-06 5.8E-11 72.8 7.0 75 32-116 3-80 (84)
3 smart00021 DAX Domain present 97.6 0.0002 4.3E-09 61.8 7.1 72 33-116 4-79 (83)
4 KOG3571 Dishevelled 3 and rela 83.5 0.95 2.1E-05 50.5 3.2 72 32-114 11-85 (626)
5 PRK00630 nickel responsive reg 26.2 38 0.00083 32.2 1.6 33 44-76 101-133 (148)
6 PRK01777 hypothetical protein; 22.1 1.2E+02 0.0025 26.9 3.6 39 31-82 4-42 (95)
7 PRK04460 nickel responsive reg 22.0 53 0.0012 30.8 1.6 32 44-75 90-121 (137)
8 PF11685 DUF3281: Protein of u 20.3 1.3E+02 0.0029 31.5 4.1 66 44-116 153-222 (268)
9 KOG0196 Tyrosine kinase, EPH ( 19.5 55 0.0012 39.2 1.4 70 38-119 677-775 (996)
10 PRK01622 OxaA-like protein pre 18.3 39 0.00084 34.2 -0.1 19 90-108 164-182 (256)
No 1
>PF06136 DUF966: Domain of unknown function (DUF966); InterPro: IPR010369 This is a family of plant proteins confined to monocotyledons and mosses, with unknown function
Probab=100.00 E-value=1.3e-108 Score=829.94 Aligned_cols=325 Identities=59% Similarity=0.951 Sum_probs=276.7
Q ss_pred eeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeecc-cccCcceEeecCCCCccccCCCCe
Q 009491 33 VPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCK-SYKNGFVWHDLCEDDLILPAHGDE 111 (533)
Q Consensus 33 v~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K-~YKngfVW~Dl~ddD~I~P~~~~e 111 (533)
|+|||||||||||||||||||+|+++|||||||||+||++|||||||+||||||| +||||||||||+|||||||++|||
T Consensus 1 V~VVYYLsRnGqLEHPHfieV~~~s~~gL~LRDV~~RL~~LRGkGMp~~ySWS~KRsYKnGfVW~DL~ddD~I~P~~g~E 80 (337)
T PF06136_consen 1 VQVVYYLSRNGQLEHPHFIEVPLSSPQGLYLRDVKDRLTALRGKGMPDMYSWSCKRSYKNGFVWHDLSDDDLILPASGNE 80 (337)
T ss_pred CcEEEEEccCCCCCCCeeEEeccCCCCCcCHHHHHHHHHHhhCCCcceeeEEeeeccccCCceeccCcCCCeeecCCCCc
Confidence 7999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eEEeccccccCCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009491 112 YVLKGSELFDESNSGRFSPGVTTKIQSLRQLTAPEPASSRSPDDSSSSSSMNEKGTKHSQDDDLSPSVHHPGSSGVSPDS 191 (533)
Q Consensus 112 YVLKgsel~~~~~~~r~~~v~~~k~q~lk~~~~~~p~s~~S~~~sSss~S~~~~E~~~~~ed~~~p~~~~~gss~~Sp~~ 191 (533)
|||||||||+.+++.+++.+ +++.+++.....+.+... +++ ...+..
T Consensus 81 YVLKGSEl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------------------~~~------------~~~~~~ 127 (337)
T PF06136_consen 81 YVLKGSELFDGSSSSRFQNA---KVSSSKQPSPEEASSRSS------------------SES------------SSSPPV 127 (337)
T ss_pred eEeeccccccCCcccccccc---cccccccccccccCCccc------------------ccc------------cccccc
Confidence 99999999999888666653 223322211111110000 000 011122
Q ss_pred cCCCCCCCCCCCCcccceeecccc---------ccccccchhhccccCCCCccccccccCCCCCChhhhhhhhcccCCCc
Q 009491 192 TAGKSSSWGGSLSLTEYKIYKNDG---------LADASTQTEENVNRAKPRETCTRGVSTDDGSIEPEITASCQKQVPCV 262 (533)
Q Consensus 192 ~~~k~~s~~sS~~~~EYkvyk~~~---------~~DAsTQTed~~r~~~~~~~c~rgvsT~d~~~~~e~~e~~~~~~~~~ 262 (533)
.++++++| +++++.||+|||++. ++||+|||||.+++.... ...
T Consensus 128 ~~~~~~~~-~s~~~~e~~~~k~~~~~~e~s~~~~~dasTqT~d~~~~~~~~--------------------------~~~ 180 (337)
T PF06136_consen 128 NRRRSQSW-SSSDDNEYKVYKAEEPESEESPVFASDASTQTDDSRRRSREE--------------------------ENE 180 (337)
T ss_pred cccCccCc-CccCccccccccccccccccccccccccCCCCcccccccccc--------------------------ccc
Confidence 34567788 777999999999865 899999999988754422 122
Q ss_pred cCCcccccCCcccCCCCCCCCCCCCCCCchhhHHHHhhhcccccccchhhhhhccCccccccchhhHHHHhhhccccccc
Q 009491 263 KENSEISGHQVSVSPPPSSSSASSSGGKTETLESLIRADVSKINSFRILEEEEIRMPTNARLKATNMLMQLISCGSVSVK 342 (533)
Q Consensus 263 ~~~~El~~e~~e~SpP~s~sS~~s~~~~~eTLEsLirAd~~~~~s~r~leee~~~~~~~~RlkassvLMQLIsCGSiSvK 342 (533)
+..+||+++ +++||+++ +.++...+++|||+||+||++.++++++++++++.++.++||||++||||||+||+|++|
T Consensus 181 ~~~~el~~e--e~s~~~~~-~~~s~~~~~~tlesl~~ad~~~~~s~~~~~~~~~~~~~~~r~r~SsvLmQLIsCGsis~~ 257 (337)
T PF06136_consen 181 EEQTELSRE--EISPPSSS-SSSSSSSSPETLESLIKADGRGIRSFRISEEEDSSGPSSGRMRASSVLMQLISCGSISVK 257 (337)
T ss_pred cccCceeec--ccCCCCCc-ccccCCCCccchhhhhcccccccccccccccccccccccCCccHHHHHHHHhcCCCcccc
Confidence 346899999 99988877 778888999999999999999999999999999988999999999999999999999999
Q ss_pred c--CCCCCCcccCCCCCCCCCCCCCCccccccCccccccCCCcccCCccCCcccccccceeeeeccccCCcccccccccc
Q 009491 343 D--HSFGVIPTYRPRFSHTKFPSPLFSTSIMFGDLDCLSDNPRLMGLKLEDKEYFSGSLIETKILKEEGDEHNALKRSSS 420 (533)
Q Consensus 343 ~--~~~glip~ykpR~s~~~~ps~~~stsv~lgeld~~senpr~~g~rlEEKEYFSGSLVEtk~~~e~gd~~~aLKRSSS 420 (533)
+ ++|+++++|++||.+..|++++++++++ |||+|+++++||||||||||||||+.+ .++++++||||||
T Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------e~~~~~~~~~eekeyFSGslvet~~~~-~~~~~~~LkrSss 328 (337)
T PF06136_consen 258 DKHSGFGLIPPYRPRFPKSRFPSPAFSRTEM--------ENPRFGNLQLEEKEYFSGSLVETKKQE-TGDAAPVLKRSSS 328 (337)
T ss_pred cccccccccccCccccccCCCCcccccchhh--------hchhhcCCcccccccccceeeeccccc-CCCCCcccccccc
Confidence 9 5999999999999999999998888765 999999999999999999999999776 6778999999999
Q ss_pred chhhhhhcc
Q 009491 421 YNADRISKQ 429 (533)
Q Consensus 421 YNedR~s~~ 429 (533)
|||||++++
T Consensus 329 yn~~r~~~~ 337 (337)
T PF06136_consen 329 YNAERSSRQ 337 (337)
T ss_pred ccchhhcCC
Confidence 999999874
No 2
>PF00778 DIX: DIX domain; InterPro: IPR001158 Dishevelled (Dsh) protein is an important component of the Wnt signal-transduction pathway. It has three relatively conserved domains: DIX, PDZ and DEP. The DIX domain of Dvl-1 (a mammalian Dishevelled homologue) shares 37% identity with the C-terminal region of Axin. Dsh can interact with the Axin/APC/GSK3/beta-catenin complex, and may thus modulate its activity []. The Wnt signalling pathway is conserved in various species from Caenorhabditis elegans to mammals, and plays important roles in development, cellular proliferation, and differentiation. The molecular mechanisms by which the Wnt signal regulates cellular functions are becoming increasingly well understood. Wnt stabilises cytoplasmic beta-catenin, which stimulates the expression of genes including c-myc, c-jun, fra-1, and cyclin D1. Axin and its homologue Axil are components of the Wnt signalling pathway that negatively regulate this pathway. Other components of the Wnt signalling pathway, including Dvl, glycogen synthase kinase-3beta (GSK-3beta), beta-catenin, and adenomatous polyposis coli (APC), interact with Axin, and the phosphorylation and stability of beta-catenin are regulated in the Axin complex. Axil has similar functions to Axin. Thus, Axin and Axil act as scaffold proteins in the Wnt signalling pathway, thereby modulating the Wnt-dependent cellular functions [].; GO: 0004871 signal transducer activity, 0007275 multicellular organismal development, 0005622 intracellular; PDB: 1WSP_B 2D5G_A 3PZ7_A 3PZ8_H.
Probab=98.25 E-value=2.7e-06 Score=72.80 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=55.7
Q ss_pred eeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeecc--cccCc-ceEeecCCCCccccCC
Q 009491 32 KVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCK--SYKNG-FVWHDLCEDDLILPAH 108 (533)
Q Consensus 32 kv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K--~YKng-fVW~Dl~ddD~I~P~~ 108 (533)
..-|+|||+. -++|.++.|+.+. +.++|+|+|+-| .-++.|-+-+| .--.| .||.+|+|||-++|..
T Consensus 3 ~T~V~Y~~~~---e~~Py~~~ip~~~-~~iTL~dFK~~l------~r~G~yrffFK~~~~d~~~~V~eEi~dD~~~LP~~ 72 (84)
T PF00778_consen 3 ETKVIYYIDD---EETPYVVKIPKPP-GEITLGDFKEVL------PRPGNYRFFFKSLDPDFGCVVKEEITDDDDILPLF 72 (84)
T ss_dssp EEEEEEEETT----SS-EEEEESSSS-TT-BHHHHHHTC------TS-SGEEEEEEEEETTTETEEEEEE-STTSB---B
T ss_pred ceEEEEEeCC---CCCceEEEccCCC-CccCHHHHHHhh------cCCCCceEEEEEeCCCCCeeeEEEEcCCccccccc
Confidence 3569999943 4599999999876 799999999999 55678999999 22234 6999999999999999
Q ss_pred CCeeEEec
Q 009491 109 GDEYVLKG 116 (533)
Q Consensus 109 ~~eYVLKg 116 (533)
.|-+|.|=
T Consensus 73 eGkI~~~v 80 (84)
T PF00778_consen 73 EGKIVAKV 80 (84)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99999873
No 3
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=97.61 E-value=0.0002 Score=61.77 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=59.0
Q ss_pred eeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeecc--c--ccCcceEeecCCCCccccCC
Q 009491 33 VPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCK--S--YKNGFVWHDLCEDDLILPAH 108 (533)
Q Consensus 33 v~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K--~--YKngfVW~Dl~ddD~I~P~~ 108 (533)
..|+|||+. =+.|.++.|+.+. +.++|+|+|+.|+.- .|-+-+| . +. |=||.+|.||+-++|..
T Consensus 4 TkV~Y~~d~---e~~PY~~~i~~~~-~~iTLgdFK~~l~k~-------~yry~FK~~d~df~-gvVkeEi~dD~~~LP~~ 71 (83)
T smart00021 4 TKVIYHLDD---EETPYLVKVPVPA-ERVTLGDFKEVLTKK-------NYKYYFKSMDDDFG-GVVKEEIRDDSARLPCF 71 (83)
T ss_pred eEEEEEeCC---CCCceeEecCCCc-CceEHHHHHHhhccC-------CcEEEEEecCcccC-CeeEEEEcCCccccccc
Confidence 459999953 4789999998764 679999999999764 2777777 2 33 88999999999999999
Q ss_pred CCeeEEec
Q 009491 109 GDEYVLKG 116 (533)
Q Consensus 109 ~~eYVLKg 116 (533)
.|.+|+|-
T Consensus 72 eGkiv~~v 79 (83)
T smart00021 72 NGRVVSWL 79 (83)
T ss_pred CCEEEEEE
Confidence 99999874
No 4
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=83.47 E-value=0.95 Score=50.48 Aligned_cols=72 Identities=24% Similarity=0.425 Sum_probs=54.8
Q ss_pred eeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeeccccc--Cc-ceEeecCCCCccccCC
Q 009491 32 KVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCKSYK--NG-FVWHDLCEDDLILPAH 108 (533)
Q Consensus 32 kv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K~YK--ng-fVW~Dl~ddD~I~P~~ 108 (533)
...|+|+|-- -+||-|+.|++++ .-++|+|+|+-|+ |+. |-+=||+-- -| -|=-.++||.-++|++
T Consensus 11 etKviyhlDd---ettPYlvki~vp~-~~vTL~dfK~vl~--R~~-----yKyy~ksmD~D~g~vVKeEi~DDs~rL~cf 79 (626)
T KOG3571|consen 11 ETKVIYHLDD---ETTPYLVKIPVPP-ERVTLGDFKNVLT--RPN-----YKYYFKSMDPDFGRVVKEEIADDSARLPCF 79 (626)
T ss_pred ceEEEEecCC---CCCceeEeeecCc-cceehhhhhhhhc--cch-----hhhhhhhhCchhhhhHhhhhccchhhcccc
Confidence 4668898842 3799999999875 7999999999997 654 444455221 23 4666889999999999
Q ss_pred CCeeEE
Q 009491 109 GDEYVL 114 (533)
Q Consensus 109 ~~eYVL 114 (533)
.|-||+
T Consensus 80 NGrvvs 85 (626)
T KOG3571|consen 80 NGRVVS 85 (626)
T ss_pred CCceEE
Confidence 998875
No 5
>PRK00630 nickel responsive regulator; Provisional
Probab=26.16 E-value=38 Score=32.17 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=29.9
Q ss_pred cCCCCeeEEecCCCCCCccHHHHHHHHHHhhCC
Q 009491 44 QLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGR 76 (533)
Q Consensus 44 ~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~ 76 (533)
||+|.|.|||-.--+.+=.++++.++|.++||-
T Consensus 101 Hld~~~CLEvivv~G~~~~I~~la~~l~~~kGV 133 (148)
T PRK00630 101 HMDHHNCLETIILRGNSFEIQRLQLEIGGLKGV 133 (148)
T ss_pred ecCCCCEEEEEEEEcCHHHHHHHHHHHHhcCCe
Confidence 589999999999888899999999999999874
No 6
>PRK01777 hypothetical protein; Validated
Probab=22.08 E-value=1.2e+02 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=28.3
Q ss_pred ceeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccce
Q 009491 31 RKVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMY 82 (533)
Q Consensus 31 rkv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~y 82 (533)
-+|.|+|-+... |. .++|.+ +.|-+++|++..| |++..|
T Consensus 4 i~v~V~ya~~~~-~~----~~~l~v--p~GtTv~dal~~s------gi~~~~ 42 (95)
T PRK01777 4 IRVEVVYALPER-QY----LQRLTL--QEGATVEEAIRAS------GLLELR 42 (95)
T ss_pred eEEEEEEECCCc-eE----EEEEEc--CCCCcHHHHHHHc------CCCccC
Confidence 478999996633 22 266665 4699999999999 877654
No 7
>PRK04460 nickel responsive regulator; Provisional
Probab=22.03 E-value=53 Score=30.77 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=29.4
Q ss_pred cCCCCeeEEecCCCCCCccHHHHHHHHHHhhC
Q 009491 44 QLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRG 75 (533)
Q Consensus 44 ~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG 75 (533)
||+|-|-|||-.--+++-.++++.++|.++||
T Consensus 90 Hld~~~ClEvivv~G~~~~I~~L~~~l~~~kG 121 (137)
T PRK04460 90 HLDHHNCLEVLVLKGKAKEIKKIADRLISTKG 121 (137)
T ss_pred ecCCCcEEEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 67999999999988889999999999999986
No 8
>PF11685 DUF3281: Protein of unknown function (DUF3281); InterPro: IPR021699 This family of bacterial proteins has no known function.
Probab=20.30 E-value=1.3e+02 Score=31.48 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=45.3
Q ss_pred cCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceee---ecc-cccCcceEeecCCCCccccCCCCeeEEec
Q 009491 44 QLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSW---SCK-SYKNGFVWHDLCEDDLILPAHGDEYVLKG 116 (533)
Q Consensus 44 ~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysW---s~K-~YKngfVW~Dl~ddD~I~P~~~~eYVLKg 116 (533)
+++|-|++.-.- =|.|++|.|+.+.|+.-+...- +.|+= +.| ..-.||+|.| -|-|.-|+++...+
T Consensus 153 ~v~~ShVF~tg~-LP~glTlq~LVdaLN~n~~~Ah-GTFsadGsnLkITCd~GY~Wld-----d~dP~yG~~~~~s~ 222 (268)
T PF11685_consen 153 AVSNSHVFQTGT-LPSGLTLQDLVDALNENSDSAH-GTFSADGSNLKITCDPGYEWLD-----DQDPAYGQEFNTSD 222 (268)
T ss_pred eecceeeecCCC-CCCCCcHHHHHHHhhccchhcc-eeEeccCCeEEEEeCCCCEecC-----cCCCCccceecccC
Confidence 456667776541 2469999999999998887542 24443 334 5668999975 45688888886444
No 9
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=19.45 E-value=55 Score=39.22 Aligned_cols=70 Identities=31% Similarity=0.574 Sum_probs=42.1
Q ss_pred EEec---CCcCCCCeeEEecC----CC---------CCC-----ccHHH----HHHHHHHhhCC--CCccceeeeccccc
Q 009491 38 YICR---NRQLEHPHFIEVPL----SS---------RDG-----LYLRD----VIDRLNVLRGR--GMASMYSWSCKSYK 90 (533)
Q Consensus 38 yL~r---~g~leHPH~ieV~~----~s---------~~g-----l~LrD----V~~rL~~lRG~--gM~~~ysWs~K~YK 90 (533)
||++ -||++|||+|.+.= .- .+| ||.+| |+.-...|||= || +|-
T Consensus 677 FL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGM---------kYL 747 (996)
T KOG0196|consen 677 FLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGM---------KYL 747 (996)
T ss_pred hhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHh---------HHH
Confidence 5665 59999999998651 11 122 33333 44455567762 33 333
Q ss_pred --CcceEeecCCCCccccCCCCeeEEecccc
Q 009491 91 --NGFVWHDLCEDDLILPAHGDEYVLKGSEL 119 (533)
Q Consensus 91 --ngfVW~Dl~ddD~I~P~~~~eYVLKgsel 119 (533)
=+||--||+.-.+++- -.-|-|=|.+
T Consensus 748 sdm~YVHRDLAARNILVN---snLvCKVsDF 775 (996)
T KOG0196|consen 748 SDMNYVHRDLAARNILVN---SNLVCKVSDF 775 (996)
T ss_pred hhcCchhhhhhhhheeec---cceEEEeccc
Confidence 3788899998776653 3456665553
No 10
>PRK01622 OxaA-like protein precursor; Validated
Probab=18.34 E-value=39 Score=34.22 Aligned_cols=19 Identities=37% Similarity=0.777 Sum_probs=16.4
Q ss_pred cCcceEeecCCCCccccCC
Q 009491 90 KNGFVWHDLCEDDLILPAH 108 (533)
Q Consensus 90 KngfVW~Dl~ddD~I~P~~ 108 (533)
..||.|.||+.-|+|+|+-
T Consensus 164 ~~~flW~dLs~~D~ILPil 182 (256)
T PRK01622 164 SHSFLWFNLGHADHILPII 182 (256)
T ss_pred CCCceeeCCcchhHHHHHH
Confidence 3689999999988999973
Done!