Query 009491
Match_columns 533
No_of_seqs 81 out of 83
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 06:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wsp_A Axin 1 protein; signali 97.8 6.3E-05 2.2E-09 63.5 8.3 74 32-117 4-81 (84)
2 3pz7_A Dixin; DIX domain, olig 97.6 0.00017 5.7E-09 61.9 8.4 75 31-115 7-83 (91)
3 3pz8_A Segment polarity protei 97.4 0.00028 9.4E-09 62.0 7.0 76 32-115 5-82 (106)
4 3hi2_B Motility quorum-sensing 26.6 36 0.0012 29.6 2.6 36 60-99 39-74 (101)
5 1rrb_A RAF-1 RBD, RAF proto-on 20.9 1.2E+02 0.004 26.8 4.7 19 58-76 36-54 (107)
6 1c1y_B Proto-onkogene serine/t 20.1 79 0.0027 26.4 3.3 28 49-76 2-37 (77)
7 1c76_A Staphylokinase, SAK; be 19.4 1.7E+02 0.0059 26.7 5.6 67 41-107 34-115 (136)
8 1bml_C Streptokinase; human pl 19.2 1.1E+02 0.0038 31.8 4.9 79 41-120 16-132 (362)
9 2kpo_A Rossmann 2X2 fold prote 15.5 15 0.00052 31.6 -2.0 33 1-49 74-107 (110)
10 2fp3_A Caspase NC; apoptosis, 15.1 62 0.0021 32.2 1.9 39 31-72 127-166 (316)
No 1
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=97.81 E-value=6.3e-05 Score=63.52 Aligned_cols=74 Identities=24% Similarity=0.400 Sum_probs=60.3
Q ss_pred eeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeecc----cccCcceEeecCCCCccccC
Q 009491 32 KVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCK----SYKNGFVWHDLCEDDLILPA 107 (533)
Q Consensus 32 kv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K----~YKngfVW~Dl~ddD~I~P~ 107 (533)
-.-|+|||+. -+.|.++-|| +..++|+|+|+-| .-++.|-+-+| -+..|.||.+|+||+-++|.
T Consensus 4 ~T~V~Y~~~~---e~~Py~~~ip---~~~iTL~dFK~~l------~k~g~yrffFK~~~~d~~~~~V~eEI~dD~~~LP~ 71 (84)
T 1wsp_A 4 SIVVAYYFCG---EPIPYRTLVR---GRAVTLGQFKELL------TKKGSYRYYFKKVSDEFDCGVVFEEVREDEAILPV 71 (84)
T ss_dssp CEEEEEEETT---CSSCEEEEET---TSCCBHHHHHHHC------CSCSCEEEEEEEECTTSTTSEEEEEECCTTCBCCC
T ss_pred ceEEEEEeCC---CCcceEEecC---CCcccHHHHHHhc------CCCCceEEEEeecCccccCCceEEEEcCCCccccc
Confidence 3569999954 5799999876 2689999999998 33457888888 34458999999999999999
Q ss_pred CCCeeEEecc
Q 009491 108 HGDEYVLKGS 117 (533)
Q Consensus 108 ~~~eYVLKgs 117 (533)
..|-.|.|-.
T Consensus 72 ~eGkIva~v~ 81 (84)
T 1wsp_A 72 FEEKIIGKVE 81 (84)
T ss_dssp BTTBEEEEEE
T ss_pred cCCEEEEEEE
Confidence 9999988753
No 2
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo sapiens}
Probab=97.64 E-value=0.00017 Score=61.87 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=62.1
Q ss_pred ceeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeecc--cccCcceEeecCCCCccccCC
Q 009491 31 RKVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCK--SYKNGFVWHDLCEDDLILPAH 108 (533)
Q Consensus 31 rkv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K--~YKngfVW~Dl~ddD~I~P~~ 108 (533)
.-..|+|||.. -+.|.++.|+.+. +.++|+|+|+-|+ -++.|-+-|| ..-.|-||..|+||+-++|..
T Consensus 7 ~~TkV~Y~~d~---e~tPY~~~Ip~~~-~~iTL~dFK~~l~------r~g~yryfFK~~d~dfg~VkeEI~dD~~~LP~~ 76 (91)
T 3pz7_A 7 TCTKVLYFTDR---SLTPFMVNIPKRL-EEVTLKDFKAAID------REGNHRYHFKAMDPEFGTVKEEIFHDDDAIPGW 76 (91)
T ss_dssp CCEEEEEECTT---CSSCEEEEESSCS-TTCBHHHHHHHHC------CCSCEEEEEEEEETTTEEEEEEECCTTSBCCCB
T ss_pred ceeEEEEEcCC---CCCceEEECcCCc-ccccHHHHHHhhC------CCCCceEEEeeeCcccCccceEecCCCceeecc
Confidence 34568999864 4789999999874 7899999999994 2346888888 555699999999999999999
Q ss_pred CCeeEEe
Q 009491 109 GDEYVLK 115 (533)
Q Consensus 109 ~~eYVLK 115 (533)
.|-.|-|
T Consensus 77 eGkIva~ 83 (91)
T 3pz7_A 77 EGKIVAW 83 (91)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9988866
No 3
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=97.42 E-value=0.00028 Score=62.02 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=60.6
Q ss_pred eeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeecc--cccCcceEeecCCCCccccCCC
Q 009491 32 KVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCK--SYKNGFVWHDLCEDDLILPAHG 109 (533)
Q Consensus 32 kv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~K--~YKngfVW~Dl~ddD~I~P~~~ 109 (533)
-..|+|||+.. +.|.++.|+.+. +.++|+|+|+-|+ .||+| .|-+-|| ..-.|-||..|+||+-++|...
T Consensus 5 ~TkV~Y~~ddE---~tPY~~~Ip~~~-~~iTL~dFK~~l~-kr~~~---nYryfFK~~d~dfgvVkeEI~dD~~~LP~~e 76 (106)
T 3pz8_A 5 DTKIIYHMDEE---ETPDLVKLPVAP-ERVTLADFKNVLS-NRPVH---AYKFFFKSMDQDFGVVKEEIFDDNAKLPCFN 76 (106)
T ss_dssp CEEEEEECTTC---SSCEEEEESSCS-SSCBHHHHHHTCT-TSCGG---GBCCEEEEEETTTEEEEEECCCTTCBCCCBT
T ss_pred ceEEEEECCCC---CCceEEEccCCc-ccccHHHHHHHHh-cCCCc---cceEEEeecCcccCeeeeEecCCcccccccC
Confidence 35799999864 689999999874 6899999998772 23333 4666677 4556889999999999999999
Q ss_pred CeeEEe
Q 009491 110 DEYVLK 115 (533)
Q Consensus 110 ~eYVLK 115 (533)
|-+|.+
T Consensus 77 GkIv~w 82 (106)
T 3pz8_A 77 GRVVSW 82 (106)
T ss_dssp TBEEEE
T ss_pred CEEEEE
Confidence 999865
No 4
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=26.60 E-value=36 Score=29.63 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=28.8
Q ss_pred CccHHHHHHHHHHhhCCCCccceeeecccccCcceEeecC
Q 009491 60 GLYLRDVIDRLNVLRGRGMASMYSWSCKSYKNGFVWHDLC 99 (533)
Q Consensus 60 gl~LrDV~~rL~~lRG~gM~~~ysWs~K~YKngfVW~Dl~ 99 (533)
|+...|+.+-+..|. +..|.-|--+|-|.-||||+-
T Consensus 39 G~~~~~m~~vI~~L~----~~~FyKSMTt~~dh~~WQDVY 74 (101)
T 3hi2_B 39 GLDFDGMCNVIIGLS----ESDFYKSMTTYSDHTIWQDVY 74 (101)
T ss_dssp TCCHHHHHHHHHTCC----GGGEEEEECCSTTTTCCEEEE
T ss_pred CCCHHHHHHHHHhcC----HHHcccccCccCCCCcceeee
Confidence 788888888887765 346777777999999999984
No 5
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=20.86 E-value=1.2e+02 Score=26.83 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=16.7
Q ss_pred CCCccHHHHHHHHHHhhCC
Q 009491 58 RDGLYLRDVIDRLNVLRGR 76 (533)
Q Consensus 58 ~~gl~LrDV~~rL~~lRG~ 76 (533)
..|++|||++...-.+||=
T Consensus 36 rpG~tlrdaL~KaLk~R~L 54 (107)
T 1rrb_A 36 RNGMSLHDCLMKALKVRGL 54 (107)
T ss_dssp CTTCBHHHHHHHHHHHHTC
T ss_pred cCCcCHHHHHHHHHHHcCC
Confidence 3699999999999888885
No 6
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=20.11 E-value=79 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred eeEEecCCCC--------CCccHHHHHHHHHHhhCC
Q 009491 49 HFIEVPLSSR--------DGLYLRDVIDRLNVLRGR 76 (533)
Q Consensus 49 H~ieV~~~s~--------~gl~LrDV~~rL~~lRG~ 76 (533)
++|.|.++.. .|++|||.+..+-.+||=
T Consensus 2 ~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L 37 (77)
T 1c1y_B 2 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL 37 (77)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC
T ss_pred ceEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC
Confidence 4555655543 599999999998888876
No 7
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=19.36 E-value=1.7e+02 Score=26.72 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=40.2
Q ss_pred cCCc-CCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCc-----------cceeeecc-cccCcce--EeecCCCCccc
Q 009491 41 RNRQ-LEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMA-----------SMYSWSCK-SYKNGFV--WHDLCEDDLIL 105 (533)
Q Consensus 41 r~g~-leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~-----------~~ysWs~K-~YKngfV--W~Dl~ddD~I~ 105 (533)
.+|+ |--||+||+++-.++=|.=..+.+.....=-..|- +-..|+|+ .-+..++ -.|++++-|++
T Consensus 34 ~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~akie~~Y~d~~~~~~~tk~~~Ite~Gf~V 113 (136)
T 1c76_A 34 GKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVV 113 (136)
T ss_dssp TTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTCEEEEEEEETTTTEEEEEEEECCSSCEEC
T ss_pred CCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCcEEEEEehhhhcccccceeeeeccCceec
Confidence 4454 56799999999887655544433333222222231 13468887 4444443 45888888888
Q ss_pred cC
Q 009491 106 PA 107 (533)
Q Consensus 106 P~ 107 (533)
|-
T Consensus 114 Pd 115 (136)
T 1c76_A 114 PD 115 (136)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 8
>1bml_C Streptokinase; human plasmin, blood clotting; 2.90A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 d.15.5.1 d.15.5.1
Probab=19.21 E-value=1.1e+02 Score=31.81 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=52.1
Q ss_pred cCC-cCCCCeeEEecCCCC--------CCc----------------------cHHHHHHHHHHhhCCCCcccee---e--
Q 009491 41 RNR-QLEHPHFIEVPLSSR--------DGL----------------------YLRDVIDRLNVLRGRGMASMYS---W-- 84 (533)
Q Consensus 41 r~g-~leHPH~ieV~~~s~--------~gl----------------------~LrDV~~rL~~lRG~gM~~~ys---W-- 84 (533)
.+| +.-+|||||+.+.+. ||| -|+-|-.+|.+.+| .+-..|. |
T Consensus 16 e~tn~~i~~~y~e~~Lts~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~K~eLL~aIq~~l~~s~~-s~~~~f~vIDF~~ 94 (362)
T 1bml_C 16 EGTNQDISLKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMPHKLEKADLLKAIQEQLIANVH-SNDDYFEVIDFAS 94 (362)
T ss_dssp SSSCCEECCCCCEEECCCCC-------------------------EEEEHHHHHHHHHHHHTTTCC-SGGGCEEEEEECT
T ss_pred cCCCEEEeEeEEEEEeeccccccccccccccccccccccccccccceecHHHHHHHHHHHHhhhcc-ccCCceEEEeecC
Confidence 444 677999999999874 342 25667778888776 3333332 1
Q ss_pred ecc-cccCcceEeecCCCCccccCCC-CeeEEeccccc
Q 009491 85 SCK-SYKNGFVWHDLCEDDLILPAHG-DEYVLKGSELF 120 (533)
Q Consensus 85 s~K-~YKngfVW~Dl~ddD~I~P~~~-~eYVLKgsel~ 120 (533)
..| .=++|.+.+=-.|+-+.+|..+ .+|.|.|--++
T Consensus 95 dAklt~r~g~~~iA~~d~svtlp~~~iq~ylL~GhV~v 132 (362)
T 1bml_C 95 DATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRV 132 (362)
T ss_dssp TCEEECTTCCEECCCTTCEEEECCSSCCCEEEEEEEEE
T ss_pred CcEEeeccccEEEecCCCCEecCCCCcceEEEEeeEEE
Confidence 233 4447777654457778888766 79999998766
No 9
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=15.48 E-value=15 Score=31.58 Aligned_cols=33 Identities=33% Similarity=0.636 Sum_probs=23.5
Q ss_pred CcccccccccCCcccceeecccCCcccCCcceeeEEEEEe-cCCcCCCCe
Q 009491 1 METRMKKYRQVSPERAKVWTEKSPKYHQLTRKVPVVYYIC-RNRQLEHPH 49 (533)
Q Consensus 1 ME~r~rr~r~~SPeR~kv~~~~~~k~~~~~rkv~VvYyL~-r~g~leHPH 49 (533)
||+--|-+.-+||+.||.|+.. ++ .+|.|||-|
T Consensus 74 meidvrtrkvtspdeakrwike----------------fseeggslehhh 107 (110)
T 2kpo_A 74 MEIDVRTRKVTSPDEAKRWIKE----------------FSEEGGSLEHHH 107 (110)
T ss_dssp TTCCEEEEECSSHHHHHHHHHH----------------HHHTTSSSSCCS
T ss_pred hceeeeeeecCChHHHHHHHHH----------------HhhccCCccccc
Confidence 5554444567999999999864 23 467888876
No 10
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=15.13 E-value=62 Score=32.19 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=29.5
Q ss_pred ceeeEEEEEecCCcCCCCeeEEecCCCC-CCccHHHHHHHHHH
Q 009491 31 RKVPVVYYICRNRQLEHPHFIEVPLSSR-DGLYLRDVIDRLNV 72 (533)
Q Consensus 31 rkv~VvYyL~r~g~leHPH~ieV~~~s~-~gl~LrDV~~rL~~ 72 (533)
.-.-|||||+++.+..+++.|- ... +.+.|.||+.-|+.
T Consensus 127 ~D~~vv~ilSHG~~~~g~g~i~---g~D~~~v~l~~I~~~f~~ 166 (316)
T 2fp3_A 127 TECFVMVLMTHGNSVEGKEKVE---FRDGSVVDMQKIKDHFQT 166 (316)
T ss_dssp CSCEEEEEESCEECCTTCCEEE---CTTSCEEEHHHHHHTTST
T ss_pred CCEEEEEEccCCCccCCCCEEE---eecCcEEeHHHHHHHhcc
Confidence 4567999999998998887662 322 35899999887763
Done!