Query 009494
Match_columns 533
No_of_seqs 375 out of 3020
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 13:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00206 DEAD-box ATP-dependen 100.0 7E-101 1E-105 812.4 54.9 495 10-510 2-496 (518)
2 KOG0331 ATP-dependent RNA heli 100.0 3.9E-78 8.5E-83 608.3 37.3 422 87-514 17-473 (519)
3 KOG0333 U5 snRNP-like RNA heli 100.0 3.8E-74 8.3E-79 561.5 33.4 404 105-511 215-649 (673)
4 PTZ00110 helicase; Provisional 100.0 5.6E-71 1.2E-75 585.7 50.6 424 85-515 83-510 (545)
5 KOG0339 ATP-dependent RNA heli 100.0 2.2E-72 4.7E-77 546.4 36.1 420 84-511 176-597 (731)
6 KOG0341 DEAD-box protein abstr 100.0 4.9E-74 1.1E-78 541.4 20.3 419 106-528 141-591 (610)
7 KOG0336 ATP-dependent RNA heli 100.0 6.2E-72 1.3E-76 530.5 30.9 419 86-512 167-595 (629)
8 KOG0330 ATP-dependent RNA heli 100.0 9.4E-70 2E-74 513.9 32.0 365 133-507 59-425 (476)
9 KOG0335 ATP-dependent RNA heli 100.0 3.8E-68 8.2E-73 526.7 32.0 387 121-508 60-463 (482)
10 KOG0334 RNA helicase [RNA proc 100.0 6.2E-68 1.3E-72 559.2 31.6 430 82-519 315-750 (997)
11 COG0513 SrmB Superfamily II DN 100.0 1.2E-65 2.5E-70 540.0 42.7 362 135-504 29-396 (513)
12 PRK04837 ATP-dependent RNA hel 100.0 1.3E-62 2.8E-67 511.1 43.1 367 135-504 8-377 (423)
13 KOG0328 Predicted ATP-dependen 100.0 1E-63 2.2E-68 453.8 29.8 374 131-514 23-398 (400)
14 KOG0338 ATP-dependent RNA heli 100.0 4.5E-64 9.8E-69 489.0 28.6 364 134-504 180-548 (691)
15 PRK10590 ATP-dependent RNA hel 100.0 3.4E-61 7.4E-66 503.6 43.5 365 136-504 2-367 (456)
16 PRK04537 ATP-dependent RNA hel 100.0 1.1E-60 2.4E-65 508.6 43.7 366 135-503 9-378 (572)
17 PRK11776 ATP-dependent RNA hel 100.0 1.4E-60 3.1E-65 501.0 43.2 359 134-503 3-363 (460)
18 KOG0342 ATP-dependent RNA heli 100.0 1.9E-61 4.1E-66 470.7 31.2 361 133-498 80-446 (543)
19 KOG0340 ATP-dependent RNA heli 100.0 2.2E-61 4.9E-66 451.9 30.2 362 134-503 6-375 (442)
20 PRK11634 ATP-dependent RNA hel 100.0 6.3E-60 1.4E-64 505.3 43.6 359 134-502 5-365 (629)
21 KOG0345 ATP-dependent RNA heli 100.0 2.8E-60 6E-65 459.4 35.4 354 136-493 5-368 (567)
22 PRK11192 ATP-dependent RNA hel 100.0 2.9E-59 6.3E-64 488.1 44.4 362 136-503 2-366 (434)
23 PRK01297 ATP-dependent RNA hel 100.0 3.2E-58 6.9E-63 484.5 45.3 369 133-504 85-457 (475)
24 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-59 2.4E-64 462.2 31.7 380 111-505 50-435 (758)
25 KOG0326 ATP-dependent RNA heli 100.0 4.3E-61 9.2E-66 443.6 19.7 358 135-503 85-443 (459)
26 KOG0348 ATP-dependent RNA heli 100.0 1.5E-59 3.3E-64 459.8 30.2 362 135-497 136-562 (708)
27 PTZ00424 helicase 45; Provisio 100.0 1.8E-56 3.9E-61 463.5 41.6 363 134-506 27-391 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 2E-57 4.4E-62 435.7 28.7 367 135-504 19-425 (569)
29 KOG0347 RNA helicase [RNA proc 100.0 4.6E-58 9.9E-63 450.8 19.5 375 130-508 176-589 (731)
30 KOG0344 ATP-dependent RNA heli 100.0 5.5E-55 1.2E-59 435.2 29.2 392 114-509 111-515 (593)
31 KOG0337 ATP-dependent RNA heli 100.0 4.9E-54 1.1E-58 410.6 21.3 363 134-504 20-383 (529)
32 TIGR03817 DECH_helic helicase/ 100.0 6.7E-52 1.4E-56 451.9 39.1 344 141-502 20-401 (742)
33 KOG0327 Translation initiation 100.0 7.8E-53 1.7E-57 400.4 25.7 356 135-502 26-383 (397)
34 KOG0350 DEAD-box ATP-dependent 100.0 9.5E-52 2.1E-56 402.5 28.4 351 145-503 147-554 (620)
35 KOG0332 ATP-dependent RNA heli 100.0 4.3E-51 9.4E-56 384.9 31.0 362 129-503 84-458 (477)
36 PLN03137 ATP-dependent DNA hel 100.0 8E-50 1.7E-54 432.4 40.5 338 136-497 436-795 (1195)
37 KOG4284 DEAD box protein [Tran 100.0 3.4E-50 7.4E-55 401.2 25.9 360 127-497 17-388 (980)
38 TIGR00614 recQ_fam ATP-depende 100.0 9.9E-49 2.1E-53 410.9 35.9 324 152-498 6-342 (470)
39 PRK02362 ski2-like helicase; P 100.0 5.4E-48 1.2E-52 425.7 33.7 333 136-489 2-397 (737)
40 PRK11057 ATP-dependent DNA hel 100.0 9.7E-47 2.1E-51 405.8 38.2 332 141-497 8-351 (607)
41 PRK00254 ski2-like helicase; P 100.0 1.2E-46 2.6E-51 414.0 35.0 339 136-490 2-389 (720)
42 TIGR01389 recQ ATP-dependent D 100.0 3.3E-46 7.2E-51 402.9 35.9 322 149-495 4-337 (591)
43 PRK13767 ATP-dependent helicas 100.0 1.5E-45 3.3E-50 409.8 38.7 342 142-487 18-396 (876)
44 PRK01172 ski2-like helicase; P 100.0 1.1E-44 2.4E-49 396.7 33.4 340 136-497 2-387 (674)
45 TIGR00580 mfd transcription-re 100.0 1.1E-43 2.4E-48 390.7 40.2 382 96-504 383-787 (926)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.8E-44 1.5E-48 381.6 33.6 314 153-488 12-390 (844)
47 PRK10689 transcription-repair 100.0 2.7E-42 5.8E-47 387.6 40.8 381 96-503 532-935 (1147)
48 COG1201 Lhr Lhr-like helicases 100.0 6.1E-43 1.3E-47 372.2 31.8 339 142-488 8-361 (814)
49 PRK10917 ATP-dependent DNA hel 100.0 8.1E-42 1.8E-46 371.5 40.8 336 144-504 248-604 (681)
50 TIGR00643 recG ATP-dependent D 100.0 9.8E-42 2.1E-46 368.6 38.4 334 145-503 224-580 (630)
51 COG0514 RecQ Superfamily II DN 100.0 3.1E-42 6.8E-47 354.5 32.0 330 148-500 7-348 (590)
52 KOG0329 ATP-dependent RNA heli 100.0 4.4E-44 9.6E-49 321.3 15.2 328 127-499 34-366 (387)
53 PRK09751 putative ATP-dependen 100.0 5.9E-41 1.3E-45 378.3 33.3 306 177-485 1-381 (1490)
54 PRK09401 reverse gyrase; Revie 100.0 1.5E-39 3.3E-44 366.1 34.4 300 149-475 72-430 (1176)
55 COG1204 Superfamily II helicas 100.0 1.6E-39 3.5E-44 350.9 28.6 332 141-487 15-406 (766)
56 PHA02653 RNA helicase NPH-II; 100.0 4.2E-39 9.2E-44 343.3 31.5 312 160-491 167-516 (675)
57 PRK12898 secA preprotein trans 100.0 8.4E-39 1.8E-43 335.6 33.0 317 154-490 101-587 (656)
58 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-38 2.5E-43 336.4 31.8 349 111-486 66-449 (501)
59 PRK14701 reverse gyrase; Provi 100.0 1E-38 2.3E-43 366.3 32.3 321 145-490 67-457 (1638)
60 COG1111 MPH1 ERCC4-like helica 100.0 1.7E-37 3.7E-42 305.7 35.0 322 155-489 13-481 (542)
61 COG1202 Superfamily II helicas 100.0 2.2E-38 4.8E-43 313.6 24.8 336 136-489 195-553 (830)
62 PRK09200 preprotein translocas 100.0 1.6E-37 3.4E-42 332.8 33.1 320 153-491 75-543 (790)
63 TIGR01054 rgy reverse gyrase. 100.0 2.9E-37 6.4E-42 348.2 35.5 291 145-461 66-409 (1171)
64 TIGR01587 cas3_core CRISPR-ass 100.0 7.4E-38 1.6E-42 319.2 27.6 300 174-491 1-338 (358)
65 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.6E-37 5.6E-42 337.1 33.2 304 161-491 6-338 (819)
66 TIGR03714 secA2 accessory Sec 100.0 9.5E-37 2.1E-41 323.7 33.1 317 159-491 70-539 (762)
67 PRK11664 ATP-dependent RNA hel 100.0 5.2E-37 1.1E-41 335.6 30.6 305 162-490 10-340 (812)
68 TIGR00963 secA preprotein tran 100.0 2.5E-36 5.4E-41 318.4 33.0 319 153-491 53-519 (745)
69 KOG0952 DNA/RNA helicase MER3/ 100.0 3.2E-37 6.9E-42 323.8 25.9 343 152-499 105-501 (1230)
70 COG1205 Distinct helicase fami 100.0 9E-36 2E-40 326.3 32.0 334 142-487 55-420 (851)
71 KOG0349 Putative DEAD-box RNA 100.0 7.3E-37 1.6E-41 293.3 19.4 278 211-488 287-614 (725)
72 PRK13766 Hef nuclease; Provisi 100.0 1.6E-34 3.6E-39 322.3 39.7 322 156-490 14-480 (773)
73 KOG0351 ATP-dependent DNA heli 100.0 1E-35 2.2E-40 323.4 27.8 331 146-498 253-601 (941)
74 KOG0352 ATP-dependent DNA heli 100.0 9.3E-36 2E-40 285.4 21.2 334 145-498 6-371 (641)
75 TIGR00603 rad25 DNA repair hel 100.0 2.8E-34 6E-39 305.0 29.8 323 156-507 254-627 (732)
76 KOG0354 DEAD-box like helicase 100.0 4.1E-34 8.8E-39 297.7 29.1 322 155-489 60-529 (746)
77 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-33 2.4E-38 285.9 31.4 290 161-474 1-357 (357)
78 PRK05580 primosome assembly pr 100.0 1.3E-31 2.8E-36 290.5 36.4 310 157-490 144-550 (679)
79 KOG0353 ATP-dependent DNA heli 100.0 8.7E-33 1.9E-37 261.4 22.8 349 138-508 74-485 (695)
80 KOG0951 RNA helicase BRR2, DEA 100.0 8.9E-33 1.9E-37 293.7 24.7 339 154-499 306-712 (1674)
81 PRK11131 ATP-dependent RNA hel 100.0 4.7E-32 1E-36 301.4 31.0 302 160-491 77-413 (1294)
82 PRK04914 ATP-dependent helicas 100.0 5.3E-31 1.1E-35 289.4 33.2 331 157-503 152-617 (956)
83 COG1200 RecG RecG-like helicas 100.0 8.8E-31 1.9E-35 269.1 32.6 337 142-504 247-606 (677)
84 PRK13104 secA preprotein trans 100.0 1.8E-30 3.9E-35 277.8 31.2 316 157-491 82-589 (896)
85 COG1061 SSL2 DNA or RNA helica 100.0 5.2E-31 1.1E-35 272.9 26.2 292 156-476 35-376 (442)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.7E-30 5.8E-35 288.5 31.1 303 164-491 74-406 (1283)
87 PRK12899 secA preprotein trans 100.0 5.8E-30 1.3E-34 273.2 30.3 148 138-297 65-228 (970)
88 cd00268 DEADc DEAD-box helicas 100.0 4.2E-30 9.1E-35 240.8 24.9 201 137-342 1-202 (203)
89 TIGR00595 priA primosomal prot 100.0 1.3E-29 2.8E-34 265.6 30.5 289 176-488 1-380 (505)
90 PRK12904 preprotein translocas 100.0 3.1E-29 6.8E-34 268.1 30.7 317 154-490 79-574 (830)
91 PRK09694 helicase Cas3; Provis 100.0 3.6E-29 7.7E-34 273.4 30.1 312 155-478 284-664 (878)
92 PRK12906 secA preprotein trans 100.0 2.6E-29 5.7E-34 267.7 27.2 317 154-490 78-554 (796)
93 COG1197 Mfd Transcription-repa 100.0 2.7E-28 5.8E-33 264.0 34.4 382 96-503 526-929 (1139)
94 KOG0950 DNA polymerase theta/e 100.0 1.3E-28 2.8E-33 258.5 26.5 346 136-499 202-621 (1008)
95 KOG0947 Cytoplasmic exosomal R 100.0 7.1E-29 1.5E-33 258.4 23.9 308 153-489 294-723 (1248)
96 COG4098 comFA Superfamily II D 100.0 1.1E-26 2.5E-31 218.0 31.7 307 157-494 97-421 (441)
97 PRK13107 preprotein translocas 100.0 2.7E-27 5.9E-32 252.6 27.3 318 154-491 80-593 (908)
98 PRK11448 hsdR type I restricti 100.0 5.7E-27 1.2E-31 263.2 30.0 310 156-478 412-802 (1123)
99 COG4581 Superfamily II RNA hel 100.0 3E-27 6.4E-32 255.9 25.9 314 151-488 114-536 (1041)
100 KOG0948 Nuclear exosomal RNA h 100.0 5E-28 1.1E-32 246.5 18.2 309 157-489 129-539 (1041)
101 PLN03142 Probable chromatin-re 100.0 7.4E-27 1.6E-31 257.6 28.4 315 157-486 169-594 (1033)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 4.8E-26 1E-30 206.7 21.1 164 159-330 1-168 (169)
103 KOG0385 Chromatin remodeling c 99.9 3E-24 6.4E-29 220.0 25.4 313 157-487 167-595 (971)
104 PRK12900 secA preprotein trans 99.9 2.8E-23 6E-28 222.9 25.6 144 360-506 577-732 (1025)
105 COG0556 UvrB Helicase subunit 99.9 3.9E-22 8.5E-27 197.7 27.6 194 314-520 386-584 (663)
106 COG1203 CRISPR-associated heli 99.9 9.6E-23 2.1E-27 223.5 25.4 330 158-499 196-560 (733)
107 KOG0922 DEAH-box RNA helicase 99.9 6.4E-23 1.4E-27 209.2 21.6 308 161-491 55-392 (674)
108 TIGR00631 uvrb excinuclease AB 99.9 2.2E-21 4.8E-26 208.3 33.2 134 364-499 425-563 (655)
109 PRK12326 preprotein translocas 99.9 1.1E-21 2.4E-26 205.2 27.9 316 154-490 76-548 (764)
110 COG1643 HrpA HrpA-like helicas 99.9 4.7E-22 1E-26 214.6 25.5 308 160-490 53-388 (845)
111 KOG0923 mRNA splicing factor A 99.9 5.4E-22 1.2E-26 200.5 21.7 341 159-527 267-652 (902)
112 COG4096 HsdR Type I site-speci 99.9 8.6E-22 1.9E-26 205.5 22.6 296 156-476 164-525 (875)
113 KOG0384 Chromodomain-helicase 99.9 5.8E-23 1.3E-27 220.0 13.9 383 84-489 299-811 (1373)
114 COG1198 PriA Primosomal protei 99.9 1.5E-20 3.2E-25 200.1 32.0 314 157-490 198-604 (730)
115 KOG0387 Transcription-coupled 99.9 1E-21 2.2E-26 202.5 22.2 329 157-499 205-671 (923)
116 TIGR01407 dinG_rel DnaQ family 99.9 1.4E-20 3E-25 210.7 32.0 349 142-504 231-831 (850)
117 PRK13103 secA preprotein trans 99.9 8.5E-21 1.8E-25 203.3 26.5 317 153-490 79-592 (913)
118 KOG0949 Predicted helicase, DE 99.9 3.6E-21 7.8E-26 201.7 22.5 159 157-326 511-673 (1330)
119 TIGR00348 hsdR type I site-spe 99.9 3.2E-20 6.9E-25 201.7 30.4 322 158-503 239-660 (667)
120 KOG0924 mRNA splicing factor A 99.9 4.3E-21 9.4E-26 194.3 19.6 348 160-530 359-746 (1042)
121 PRK05298 excinuclease ABC subu 99.9 1.5E-19 3.3E-24 195.6 31.3 141 365-507 430-584 (652)
122 COG1110 Reverse gyrase [DNA re 99.9 5.8E-20 1.3E-24 194.7 25.6 286 147-461 72-417 (1187)
123 smart00487 DEXDc DEAD-like hel 99.9 4.9E-20 1.1E-24 171.1 21.9 186 153-346 4-192 (201)
124 PRK12903 secA preprotein trans 99.9 2E-19 4.4E-24 190.7 28.1 316 154-490 76-540 (925)
125 KOG0920 ATP-dependent RNA heli 99.9 1.2E-19 2.5E-24 195.3 25.8 313 159-489 175-544 (924)
126 KOG0390 DNA repair protein, SN 99.8 8.6E-19 1.9E-23 185.6 27.7 320 157-486 238-702 (776)
127 KOG0389 SNF2 family DNA-depend 99.8 1.9E-19 4.1E-24 185.7 21.1 319 157-489 399-888 (941)
128 PRK07246 bifunctional ATP-depe 99.8 3.5E-18 7.6E-23 188.9 31.2 330 153-503 242-799 (820)
129 KOG0926 DEAH-box RNA helicase 99.8 4.7E-19 1E-23 182.5 18.3 323 162-508 261-737 (1172)
130 CHL00122 secA preprotein trans 99.8 8.3E-18 1.8E-22 179.7 26.6 276 153-449 73-491 (870)
131 KOG0951 RNA helicase BRR2, DEA 99.8 3.6E-19 7.8E-24 190.9 16.0 316 155-499 1141-1504(1674)
132 KOG0392 SNF2 family DNA-depend 99.8 8.6E-18 1.9E-22 180.2 23.5 324 157-488 975-1453(1549)
133 KOG4150 Predicted ATP-dependen 99.8 2.9E-18 6.2E-23 170.8 17.3 325 151-487 280-638 (1034)
134 KOG1123 RNA polymerase II tran 99.8 1E-18 2.2E-23 171.8 13.3 322 156-506 301-672 (776)
135 cd00079 HELICc Helicase superf 99.8 6.2E-18 1.3E-22 146.3 15.0 120 365-485 12-131 (131)
136 KOG0386 Chromatin remodeling c 99.8 3.1E-18 6.6E-23 180.9 13.9 328 157-500 394-847 (1157)
137 PRK12902 secA preprotein trans 99.8 1.8E-16 3.8E-21 169.3 26.3 275 154-449 83-506 (939)
138 KOG1000 Chromatin remodeling p 99.8 3.1E-17 6.7E-22 161.3 18.5 310 156-486 197-598 (689)
139 KOG1002 Nucleotide excision re 99.8 2.6E-16 5.6E-21 154.8 23.9 120 381-503 638-761 (791)
140 KOG0925 mRNA splicing factor A 99.7 1.4E-16 3E-21 156.5 20.9 329 134-489 24-387 (699)
141 TIGR03117 cas_csf4 CRISPR-asso 99.7 4E-15 8.8E-20 157.7 33.5 120 380-502 469-630 (636)
142 KOG0953 Mitochondrial RNA heli 99.7 4.7E-18 1E-22 169.4 10.5 311 172-533 191-537 (700)
143 PRK08074 bifunctional ATP-depe 99.7 1.9E-15 4.2E-20 170.2 32.5 135 369-503 739-909 (928)
144 KOG0391 SNF2 family DNA-depend 99.7 2.3E-16 5.1E-21 167.7 22.7 124 365-489 1260-1387(1958)
145 COG4889 Predicted helicase [Ge 99.7 2.3E-17 4.9E-22 171.4 12.8 356 135-505 140-617 (1518)
146 PF00271 Helicase_C: Helicase 99.7 2.4E-17 5.1E-22 129.0 9.1 77 400-477 2-78 (78)
147 cd00046 DEXDc DEAD-like helica 99.7 4.2E-16 9.2E-21 136.0 16.6 143 173-324 1-144 (144)
148 KOG0388 SNF2 family DNA-depend 99.7 2E-16 4.3E-21 161.2 16.1 123 364-487 1027-1150(1185)
149 PRK12901 secA preprotein trans 99.7 1.8E-15 3.9E-20 163.2 21.6 128 360-490 607-742 (1112)
150 PF04851 ResIII: Type III rest 99.7 5.1E-16 1.1E-20 142.6 11.9 153 157-326 3-184 (184)
151 KOG4439 RNA polymerase II tran 99.6 1.1E-14 2.5E-19 148.9 17.0 119 366-485 730-852 (901)
152 PRK11747 dinG ATP-dependent DN 99.6 9E-13 2E-17 144.2 30.6 132 368-503 521-690 (697)
153 TIGR00604 rad3 DNA repair heli 99.6 1.6E-12 3.5E-17 143.4 30.7 74 153-233 6-83 (705)
154 COG1199 DinG Rad3-related DNA 99.6 6E-13 1.3E-17 146.5 26.5 120 381-504 479-634 (654)
155 smart00490 HELICc helicase sup 99.6 1.2E-14 2.5E-19 114.5 9.3 81 396-477 2-82 (82)
156 PRK14873 primosome assembly pr 99.6 9.4E-13 2E-17 141.6 26.2 281 177-490 165-540 (665)
157 PF06862 DUF1253: Protein of u 99.5 7.4E-12 1.6E-16 126.7 29.2 289 208-499 35-425 (442)
158 TIGR02562 cas3_yersinia CRISPR 99.5 1.5E-12 3.2E-17 141.7 22.5 310 157-478 408-881 (1110)
159 COG0553 HepA Superfamily II DN 99.5 6.3E-13 1.4E-17 151.7 20.9 326 156-492 337-823 (866)
160 COG0653 SecA Preprotein transl 99.4 8.6E-12 1.9E-16 133.4 18.6 314 160-490 81-546 (822)
161 PF02399 Herpes_ori_bp: Origin 99.4 2.8E-11 6.1E-16 128.7 21.5 289 174-489 51-388 (824)
162 KOG2340 Uncharacterized conser 99.4 1.6E-11 3.4E-16 122.6 17.7 343 156-500 215-679 (698)
163 KOG1015 Transcription regulato 99.4 1.7E-11 3.8E-16 129.1 16.2 122 366-487 1127-1273(1567)
164 PF00176 SNF2_N: SNF2 family N 99.3 1.2E-11 2.7E-16 122.8 11.8 157 161-325 1-173 (299)
165 PF07652 Flavi_DEAD: Flaviviru 99.2 3.7E-11 8E-16 102.0 9.5 136 171-328 3-140 (148)
166 COG0610 Type I site-specific r 99.2 1.9E-09 4E-14 121.5 24.8 314 173-505 274-667 (962)
167 smart00488 DEXDc2 DEAD-like he 99.2 5.7E-10 1.2E-14 109.5 14.5 73 157-233 8-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.2 5.7E-10 1.2E-14 109.5 14.5 73 157-233 8-84 (289)
169 PRK15483 type III restriction- 99.1 5.4E-08 1.2E-12 107.0 27.7 73 432-504 501-583 (986)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 6.1E-09 1.3E-13 99.6 14.1 130 153-297 74-210 (266)
171 KOG1016 Predicted DNA helicase 98.8 6.7E-08 1.4E-12 100.7 15.7 109 380-488 718-846 (1387)
172 KOG0921 Dosage compensation co 98.8 2.9E-08 6.3E-13 105.0 13.1 310 163-488 384-773 (1282)
173 KOG0952 DNA/RNA helicase MER3/ 98.8 2E-09 4.3E-14 115.7 1.5 260 157-434 927-1207(1230)
174 COG3587 Restriction endonuclea 98.7 1.6E-06 3.6E-11 92.1 20.5 73 432-504 483-568 (985)
175 KOG1001 Helicase-like transcri 98.6 1.5E-07 3.3E-12 101.2 10.2 119 365-484 522-643 (674)
176 TIGR00596 rad1 DNA repair prot 98.5 3E-06 6.6E-11 93.4 17.6 66 259-324 6-72 (814)
177 PF13086 AAA_11: AAA domain; P 98.4 2.7E-06 5.9E-11 80.9 10.7 73 158-232 2-75 (236)
178 PF13872 AAA_34: P-loop contai 98.3 1.1E-05 2.4E-10 77.6 13.4 172 140-331 26-227 (303)
179 PF12340 DUF3638: Protein of u 98.2 1.6E-05 3.5E-10 73.7 11.4 151 136-298 4-186 (229)
180 PF13307 Helicase_C_2: Helicas 98.2 6E-06 1.3E-10 74.3 7.8 117 381-501 9-164 (167)
181 PF13604 AAA_30: AAA domain; P 98.1 8.1E-06 1.8E-10 75.5 8.5 122 157-323 1-130 (196)
182 PF02562 PhoH: PhoH-like prote 98.1 6.6E-06 1.4E-10 75.7 7.4 57 158-222 5-61 (205)
183 PF09848 DUF2075: Uncharacteri 98.1 1.9E-05 4.1E-10 80.2 10.6 108 174-311 3-117 (352)
184 KOG1802 RNA helicase nonsense 98.1 1.5E-05 3.2E-10 82.7 8.8 84 149-245 402-485 (935)
185 TIGR00376 DNA helicase, putati 97.8 0.00015 3.3E-09 78.9 12.6 67 156-232 156-223 (637)
186 PRK10536 hypothetical protein; 97.8 0.00033 7.2E-09 66.4 12.9 60 154-221 56-115 (262)
187 KOG1803 DNA helicase [Replicat 97.8 4.6E-05 1E-09 78.7 7.7 63 157-229 185-248 (649)
188 COG3421 Uncharacterized protei 97.8 0.00012 2.6E-09 75.4 10.3 154 177-344 2-183 (812)
189 PRK10875 recD exonuclease V su 97.8 0.00037 8E-09 75.2 14.0 141 159-323 154-301 (615)
190 TIGR01447 recD exodeoxyribonuc 97.8 0.00044 9.5E-09 74.4 14.4 142 159-323 147-295 (586)
191 KOG1132 Helicase of the DEAD s 97.7 0.00026 5.6E-09 76.3 11.9 139 157-298 21-261 (945)
192 PF13245 AAA_19: Part of AAA d 97.7 0.0002 4.3E-09 55.0 7.3 53 172-230 10-62 (76)
193 KOG0383 Predicted helicase [Ge 97.6 3.5E-06 7.7E-11 89.8 -4.4 78 366-445 616-696 (696)
194 TIGR01448 recD_rel helicase, p 97.6 0.0013 2.8E-08 72.9 14.6 64 156-227 322-385 (720)
195 PRK08116 hypothetical protein; 97.4 0.0033 7.1E-08 61.1 14.1 46 283-329 177-226 (268)
196 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0028 6E-08 70.6 15.1 120 157-321 352-474 (744)
197 PRK13889 conjugal transfer rel 97.4 0.0031 6.6E-08 71.4 15.2 122 157-323 346-470 (988)
198 COG2805 PilT Tfp pilus assembl 97.3 0.00037 8.1E-09 66.5 5.3 52 129-199 100-151 (353)
199 PF13871 Helicase_C_4: Helicas 97.2 0.0014 3E-08 63.0 8.8 85 423-507 52-148 (278)
200 PF00580 UvrD-helicase: UvrD/R 97.2 0.0011 2.3E-08 66.1 8.4 123 158-294 1-125 (315)
201 KOG0298 DEAD box-containing he 97.2 0.00094 2E-08 74.6 7.9 154 171-328 373-554 (1394)
202 PF13401 AAA_22: AAA domain; P 97.2 0.0014 3.1E-08 56.0 7.4 19 171-189 3-21 (131)
203 TIGR02760 TraI_TIGR conjugativ 97.2 0.077 1.7E-06 65.2 24.3 237 157-432 429-686 (1960)
204 PF14617 CMS1: U3-containing 9 97.2 0.0012 2.5E-08 62.8 7.2 87 208-295 124-212 (252)
205 KOG1805 DNA replication helica 97.1 0.0034 7.4E-08 68.6 11.4 144 134-299 650-811 (1100)
206 smart00492 HELICc3 helicase su 97.1 0.0042 9.1E-08 54.0 9.9 79 410-488 25-137 (141)
207 cd00009 AAA The AAA+ (ATPases 97.1 0.0077 1.7E-07 52.0 11.6 17 172-188 19-35 (151)
208 PRK13826 Dtr system oriT relax 97.1 0.013 2.9E-07 66.9 15.7 136 142-323 367-505 (1102)
209 PRK04296 thymidine kinase; Pro 97.0 0.0017 3.7E-08 59.8 7.1 36 173-218 3-38 (190)
210 PRK12723 flagellar biosynthesi 97.0 0.011 2.3E-07 60.3 12.9 129 173-335 175-309 (388)
211 smart00491 HELICc2 helicase su 97.0 0.0046 1E-07 53.8 8.9 76 413-488 25-138 (142)
212 smart00382 AAA ATPases associa 96.9 0.0044 9.5E-08 53.1 8.3 18 172-189 2-19 (148)
213 PHA02533 17 large terminase pr 96.9 0.0049 1.1E-07 65.7 9.9 146 157-323 59-209 (534)
214 KOG1131 RNA polymerase II tran 96.9 0.014 3E-07 59.7 12.3 74 154-233 13-90 (755)
215 PRK06526 transposase; Provisio 96.9 0.015 3.3E-07 55.9 12.4 23 168-190 94-116 (254)
216 COG1875 NYN ribonuclease and A 96.8 0.013 2.7E-07 57.8 11.1 148 153-321 224-385 (436)
217 PF05970 PIF1: PIF1-like helic 96.8 0.0024 5.2E-08 65.1 6.4 59 158-226 2-66 (364)
218 KOG0701 dsRNA-specific nucleas 96.7 0.0018 3.8E-08 75.3 4.9 95 383-477 294-399 (1606)
219 PRK08181 transposase; Validate 96.7 0.053 1.1E-06 52.6 14.2 118 159-327 89-212 (269)
220 PRK14974 cell division protein 96.6 0.024 5.2E-07 56.7 12.0 52 284-335 222-275 (336)
221 PRK07952 DNA replication prote 96.6 0.047 1E-06 52.1 13.3 48 282-329 160-210 (244)
222 PF03354 Terminase_1: Phage Te 96.6 0.0082 1.8E-07 63.6 8.8 150 160-322 1-161 (477)
223 PRK06921 hypothetical protein; 96.2 0.055 1.2E-06 52.5 11.6 45 171-225 116-160 (266)
224 cd01120 RecA-like_NTPases RecA 96.2 0.039 8.4E-07 48.7 9.7 38 175-222 2-39 (165)
225 PRK06835 DNA replication prote 96.2 0.15 3.3E-06 50.9 14.8 47 282-328 244-293 (329)
226 PRK08727 hypothetical protein; 96.2 0.04 8.6E-07 52.5 10.2 46 283-328 92-140 (233)
227 PRK06893 DNA replication initi 96.2 0.016 3.5E-07 55.0 7.5 44 283-326 90-136 (229)
228 PRK12377 putative replication 96.2 0.079 1.7E-06 50.7 12.1 46 172-228 101-146 (248)
229 PRK11054 helD DNA helicase IV; 96.1 0.053 1.2E-06 59.7 12.1 71 156-234 195-265 (684)
230 PRK00149 dnaA chromosomal repl 96.1 0.082 1.8E-06 55.7 13.1 48 284-331 211-261 (450)
231 cd01124 KaiC KaiC is a circadi 96.1 0.087 1.9E-06 48.0 11.8 48 175-233 2-49 (187)
232 PRK05580 primosome assembly pr 96.1 0.044 9.5E-07 60.6 11.4 93 365-458 174-266 (679)
233 cd01122 GP4d_helicase GP4d_hel 96.1 0.03 6.4E-07 54.7 9.1 119 169-299 27-155 (271)
234 TIGR00595 priA primosomal prot 96.1 0.038 8.2E-07 58.8 10.3 92 365-457 9-100 (505)
235 PRK11889 flhF flagellar biosyn 96.0 0.12 2.6E-06 52.3 13.0 128 173-336 242-375 (436)
236 TIGR01075 uvrD DNA helicase II 96.0 0.023 4.9E-07 63.5 8.8 71 156-234 3-73 (715)
237 PRK05642 DNA replication initi 96.0 0.045 9.7E-07 52.1 9.4 43 284-326 97-141 (234)
238 PF13173 AAA_14: AAA domain 95.9 0.13 2.9E-06 43.7 11.4 39 284-324 61-99 (128)
239 PRK05707 DNA polymerase III su 95.9 0.045 9.8E-07 54.8 9.7 33 158-190 4-40 (328)
240 PRK14873 primosome assembly pr 95.9 0.055 1.2E-06 59.2 10.7 94 364-458 171-265 (665)
241 PRK14712 conjugal transfer nic 95.8 0.073 1.6E-06 63.1 12.1 64 157-226 835-900 (1623)
242 TIGR00362 DnaA chromosomal rep 95.8 0.13 2.8E-06 53.4 12.9 47 284-330 199-248 (405)
243 PRK11773 uvrD DNA-dependent he 95.8 0.026 5.5E-07 63.1 8.2 70 157-234 9-78 (721)
244 PRK12422 chromosomal replicati 95.8 0.11 2.3E-06 54.4 12.0 52 283-334 201-255 (445)
245 COG1419 FlhF Flagellar GTP-bin 95.8 0.024 5.2E-07 57.1 6.8 120 172-325 203-324 (407)
246 PRK14087 dnaA chromosomal repl 95.7 0.048 1E-06 57.2 9.3 109 173-328 142-253 (450)
247 PRK08084 DNA replication initi 95.7 0.1 2.3E-06 49.7 10.9 17 172-188 45-61 (235)
248 COG3973 Superfamily I DNA and 95.7 0.058 1.3E-06 56.5 9.5 92 140-235 187-285 (747)
249 TIGR01547 phage_term_2 phage t 95.7 0.025 5.4E-07 58.5 7.1 133 175-326 4-142 (396)
250 PRK14722 flhF flagellar biosyn 95.7 0.028 6.1E-07 56.9 7.2 23 171-193 136-158 (374)
251 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.077 1.7E-06 50.1 10.0 19 171-189 37-55 (226)
252 PF00448 SRP54: SRP54-type pro 95.6 0.049 1.1E-06 50.3 7.9 48 283-330 82-131 (196)
253 PRK08903 DnaA regulatory inact 95.6 0.078 1.7E-06 50.2 9.4 42 284-326 90-133 (227)
254 COG1219 ClpX ATP-dependent pro 95.6 0.0092 2E-07 57.6 2.9 28 170-199 95-122 (408)
255 COG2256 MGS1 ATPase related to 95.6 0.046 9.9E-07 54.7 7.8 35 286-324 106-140 (436)
256 KOG0989 Replication factor C, 95.6 0.066 1.4E-06 51.7 8.6 46 279-325 124-170 (346)
257 COG1484 DnaC DNA replication p 95.6 0.099 2.1E-06 50.4 10.1 50 171-231 104-153 (254)
258 PF00308 Bac_DnaA: Bacterial d 95.5 0.048 1E-06 51.4 7.7 106 174-328 36-144 (219)
259 PRK08769 DNA polymerase III su 95.5 0.15 3.3E-06 50.6 11.4 43 155-198 2-51 (319)
260 PRK14088 dnaA chromosomal repl 95.5 0.18 3.8E-06 52.9 12.3 50 284-333 194-246 (440)
261 PTZ00112 origin recognition co 95.4 0.36 7.7E-06 53.7 14.5 28 283-311 868-895 (1164)
262 PRK10919 ATP-dependent DNA hel 95.4 0.048 1E-06 60.3 8.3 70 157-234 2-71 (672)
263 COG1198 PriA Primosomal protei 95.4 0.059 1.3E-06 59.0 8.6 99 357-456 221-319 (730)
264 PRK13833 conjugal transfer pro 95.3 0.062 1.3E-06 53.5 8.0 64 149-222 122-186 (323)
265 PRK12402 replication factor C 95.3 0.19 4.2E-06 50.6 11.8 40 283-323 124-163 (337)
266 TIGR02881 spore_V_K stage V sp 95.3 0.18 4E-06 48.8 11.1 18 173-190 43-60 (261)
267 COG4626 Phage terminase-like p 95.3 0.12 2.7E-06 54.0 10.2 146 157-323 61-224 (546)
268 PRK06995 flhF flagellar biosyn 95.3 0.86 1.9E-05 47.9 16.4 22 172-193 256-277 (484)
269 PRK13709 conjugal transfer nic 95.3 0.21 4.6E-06 60.1 13.4 64 157-226 967-1032(1747)
270 PRK10917 ATP-dependent DNA hel 95.2 0.15 3.4E-06 56.5 11.4 78 379-456 308-389 (681)
271 PHA03333 putative ATPase subun 95.1 0.21 4.6E-06 53.8 11.6 151 156-324 168-332 (752)
272 COG1435 Tdk Thymidine kinase [ 95.1 0.19 4.2E-06 45.4 9.7 89 174-296 6-94 (201)
273 cd00984 DnaB_C DnaB helicase C 95.1 0.065 1.4E-06 51.2 7.3 38 171-217 12-49 (242)
274 PRK13342 recombination factor 95.1 0.19 4E-06 52.4 11.2 38 284-325 92-129 (413)
275 TIGR02760 TraI_TIGR conjugativ 95.1 0.17 3.7E-06 62.3 12.3 63 156-226 1018-1084(1960)
276 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.5 1.1E-05 48.0 13.8 109 172-328 62-172 (362)
277 PRK13894 conjugal transfer ATP 95.1 0.078 1.7E-06 52.8 7.9 66 147-222 124-190 (319)
278 TIGR02785 addA_Gpos recombinat 95.1 0.13 2.8E-06 60.9 10.9 121 158-295 2-126 (1232)
279 PRK07994 DNA polymerase III su 95.0 0.19 4.2E-06 54.6 11.1 40 283-323 118-157 (647)
280 PRK14956 DNA polymerase III su 95.0 0.069 1.5E-06 55.7 7.4 17 175-191 43-59 (484)
281 PRK14960 DNA polymerase III su 95.0 0.062 1.3E-06 57.9 7.2 40 283-323 117-156 (702)
282 TIGR01074 rep ATP-dependent DN 95.0 0.11 2.3E-06 57.8 9.4 69 158-234 2-70 (664)
283 PF00004 AAA: ATPase family as 94.9 0.1 2.2E-06 44.3 7.4 16 285-300 59-74 (132)
284 PLN03025 replication factor C 94.9 0.3 6.5E-06 48.9 11.8 40 283-323 98-137 (319)
285 PRK00411 cdc6 cell division co 94.9 0.19 4E-06 52.0 10.4 16 173-188 56-71 (394)
286 PRK11823 DNA repair protein Ra 94.8 0.36 7.9E-06 50.6 12.5 92 171-298 79-170 (446)
287 PRK07764 DNA polymerase III su 94.8 0.14 3.1E-06 57.4 9.8 42 283-325 119-160 (824)
288 PRK14086 dnaA chromosomal repl 94.7 0.27 5.8E-06 52.9 11.3 47 283-329 376-425 (617)
289 PRK11331 5-methylcytosine-spec 94.7 0.086 1.9E-06 54.4 7.3 33 158-190 180-212 (459)
290 TIGR02782 TrbB_P P-type conjug 94.7 0.15 3.2E-06 50.4 8.7 66 147-222 108-174 (299)
291 PF05127 Helicase_RecD: Helica 94.7 0.018 3.9E-07 51.8 2.0 124 176-325 1-124 (177)
292 PRK12726 flagellar biosynthesi 94.6 0.18 3.9E-06 50.9 9.1 21 172-192 206-226 (407)
293 PHA03368 DNA packaging termina 94.6 0.19 4.1E-06 53.9 9.6 133 171-323 253-389 (738)
294 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.081 1.8E-06 53.6 6.7 49 130-197 110-158 (358)
295 KOG0739 AAA+-type ATPase [Post 94.6 0.8 1.7E-05 44.2 12.6 174 114-349 112-303 (439)
296 COG1444 Predicted P-loop ATPas 94.5 0.36 7.7E-06 52.9 11.6 147 150-325 207-357 (758)
297 PRK07003 DNA polymerase III su 94.5 0.25 5.5E-06 54.1 10.4 42 283-325 118-159 (830)
298 CHL00181 cbbX CbbX; Provisiona 94.5 0.66 1.4E-05 45.6 12.6 19 172-190 59-77 (287)
299 PHA02544 44 clamp loader, smal 94.5 0.27 5.8E-06 49.1 10.1 40 284-323 100-139 (316)
300 PRK12323 DNA polymerase III su 94.4 0.12 2.7E-06 55.6 7.7 38 283-321 123-161 (700)
301 PF05496 RuvB_N: Holliday junc 94.4 0.09 1.9E-06 48.9 5.9 16 174-189 52-67 (233)
302 PRK14964 DNA polymerase III su 94.4 0.29 6.2E-06 51.6 10.3 42 282-324 114-155 (491)
303 COG2804 PulE Type II secretory 94.4 0.077 1.7E-06 54.9 5.9 39 159-198 243-283 (500)
304 PRK06904 replicative DNA helic 94.3 0.7 1.5E-05 48.8 13.2 116 171-298 220-348 (472)
305 PRK14723 flhF flagellar biosyn 94.3 0.18 4E-06 55.5 9.1 22 172-193 185-206 (767)
306 PRK14958 DNA polymerase III su 94.3 0.12 2.6E-06 55.0 7.5 40 283-323 118-157 (509)
307 PRK06731 flhF flagellar biosyn 94.3 0.8 1.7E-05 44.4 12.6 130 171-336 74-209 (270)
308 PRK05342 clpX ATP-dependent pr 94.3 0.097 2.1E-06 54.1 6.6 19 171-189 107-125 (412)
309 PF13177 DNA_pol3_delta2: DNA 94.3 0.34 7.5E-06 43.2 9.4 42 283-325 101-142 (162)
310 cd01121 Sms Sms (bacterial rad 94.3 0.73 1.6E-05 47.0 12.8 91 171-297 81-171 (372)
311 PRK00771 signal recognition pa 94.3 0.59 1.3E-05 48.6 12.3 19 173-191 96-114 (437)
312 TIGR00643 recG ATP-dependent D 94.3 0.23 5.1E-06 54.6 9.9 77 380-456 283-363 (630)
313 COG4962 CpaF Flp pilus assembl 94.3 0.13 2.8E-06 50.7 7.0 58 154-222 154-212 (355)
314 PRK13341 recombination factor 94.2 0.27 5.8E-06 54.6 10.2 42 284-329 109-150 (725)
315 PRK12727 flagellar biosynthesi 94.2 0.37 8.1E-06 50.8 10.7 21 171-191 349-369 (559)
316 KOG1513 Nuclear helicase MOP-3 94.2 0.073 1.6E-06 57.3 5.4 83 425-507 850-944 (1300)
317 COG0593 DnaA ATPase involved i 94.2 0.25 5.5E-06 50.4 9.2 46 284-329 175-223 (408)
318 PRK14961 DNA polymerase III su 94.1 0.11 2.5E-06 52.9 6.7 40 283-323 118-157 (363)
319 PF05621 TniB: Bacterial TniB 94.1 0.4 8.7E-06 46.8 9.9 53 173-230 62-116 (302)
320 TIGR03600 phage_DnaB phage rep 94.1 0.58 1.3E-05 48.8 12.1 39 170-217 192-230 (421)
321 PRK06645 DNA polymerase III su 94.1 0.42 9.2E-06 50.7 11.0 18 174-191 45-62 (507)
322 PTZ00293 thymidine kinase; Pro 94.1 0.42 9.1E-06 44.3 9.5 38 172-219 4-41 (211)
323 TIGR02928 orc1/cdc6 family rep 94.0 0.29 6.3E-06 49.9 9.5 24 173-197 41-64 (365)
324 TIGR02880 cbbX_cfxQ probable R 94.0 0.61 1.3E-05 45.8 11.3 18 172-189 58-75 (284)
325 TIGR02525 plasmid_TraJ plasmid 94.0 0.15 3.2E-06 51.9 7.1 49 131-198 126-174 (372)
326 PF04438 zf-HIT: HIT zinc fing 93.9 0.02 4.2E-07 35.0 0.4 27 37-63 3-29 (30)
327 PRK14949 DNA polymerase III su 93.9 0.17 3.7E-06 56.4 7.8 43 283-326 118-160 (944)
328 PRK14962 DNA polymerase III su 93.9 0.33 7.1E-06 51.2 9.7 17 175-191 39-55 (472)
329 KOG0733 Nuclear AAA ATPase (VC 93.9 0.25 5.4E-06 52.1 8.4 54 132-188 505-561 (802)
330 PRK06871 DNA polymerase III su 93.9 0.61 1.3E-05 46.5 11.0 42 283-325 106-147 (325)
331 PF01695 IstB_IS21: IstB-like 93.9 0.15 3.2E-06 46.3 6.2 47 169-226 44-90 (178)
332 PRK06964 DNA polymerase III su 93.9 0.53 1.2E-05 47.3 10.6 33 158-190 2-39 (342)
333 PRK12724 flagellar biosynthesi 93.8 1.1 2.5E-05 46.0 13.0 125 173-335 224-356 (432)
334 PRK05563 DNA polymerase III su 93.8 0.22 4.7E-06 53.8 8.3 43 282-325 117-159 (559)
335 PRK14955 DNA polymerase III su 93.8 0.4 8.6E-06 49.6 10.0 41 282-323 125-165 (397)
336 PRK14959 DNA polymerase III su 93.8 0.28 6.1E-06 52.9 9.0 43 283-326 118-160 (624)
337 PRK05986 cob(I)alamin adenolsy 93.7 0.6 1.3E-05 42.5 9.8 146 170-334 20-168 (191)
338 PF03796 DnaB_C: DnaB-like hel 93.7 0.45 9.7E-06 46.0 9.7 126 171-311 18-161 (259)
339 TIGR03015 pepcterm_ATPase puta 93.7 0.32 7E-06 47.2 8.8 33 157-189 23-60 (269)
340 KOG0991 Replication factor C, 93.7 0.36 7.7E-06 44.9 8.1 29 282-311 111-139 (333)
341 PRK09111 DNA polymerase III su 93.6 0.5 1.1E-05 51.3 10.7 41 282-323 130-170 (598)
342 PRK08691 DNA polymerase III su 93.6 0.42 9E-06 52.2 10.0 40 283-323 118-157 (709)
343 PRK05703 flhF flagellar biosyn 93.6 0.22 4.8E-06 51.8 7.7 128 172-335 221-354 (424)
344 TIGR00064 ftsY signal recognit 93.6 0.64 1.4E-05 45.3 10.5 53 283-335 153-213 (272)
345 PRK08533 flagellar accessory p 93.6 0.81 1.7E-05 43.4 11.0 52 171-233 23-74 (230)
346 PRK13851 type IV secretion sys 93.6 0.11 2.4E-06 52.2 5.3 44 168-222 158-201 (344)
347 PRK07940 DNA polymerase III su 93.5 0.65 1.4E-05 47.8 10.8 45 283-328 116-160 (394)
348 PRK13900 type IV secretion sys 93.5 0.23 5E-06 49.8 7.5 43 169-222 157-199 (332)
349 PRK08840 replicative DNA helic 93.4 0.5 1.1E-05 49.8 10.0 40 170-218 215-254 (464)
350 TIGR01073 pcrA ATP-dependent D 93.4 0.24 5.2E-06 55.5 8.2 71 156-234 3-73 (726)
351 TIGR00580 mfd transcription-re 93.4 0.42 9.2E-06 54.5 10.1 77 380-456 499-579 (926)
352 COG5008 PilU Tfp pilus assembl 93.4 0.067 1.4E-06 50.5 3.0 44 132-195 105-149 (375)
353 COG0470 HolB ATPase involved i 93.4 0.55 1.2E-05 46.9 10.1 41 282-323 107-147 (325)
354 PF05876 Terminase_GpA: Phage 93.3 0.14 3.1E-06 55.1 5.9 125 157-297 16-147 (557)
355 TIGR01425 SRP54_euk signal rec 93.3 1.6 3.4E-05 45.2 13.2 17 174-190 102-118 (429)
356 TIGR03499 FlhF flagellar biosy 93.3 0.15 3.4E-06 49.9 5.7 19 172-190 194-212 (282)
357 COG1474 CDC6 Cdc6-related prot 93.2 2 4.3E-05 43.8 13.7 29 283-312 122-150 (366)
358 PRK04195 replication factor C 93.2 0.71 1.5E-05 49.1 10.9 18 172-189 39-56 (482)
359 PRK14957 DNA polymerase III su 93.2 0.35 7.5E-06 51.7 8.5 40 283-323 118-157 (546)
360 TIGR03881 KaiC_arch_4 KaiC dom 93.1 0.91 2E-05 42.9 10.7 52 171-233 19-70 (229)
361 PRK08699 DNA polymerase III su 93.1 1 2.2E-05 45.1 11.3 34 158-191 2-40 (325)
362 PRK05896 DNA polymerase III su 93.1 0.47 1E-05 51.0 9.3 42 283-325 118-159 (605)
363 TIGR01420 pilT_fam pilus retra 93.1 0.24 5.1E-06 50.1 6.9 43 171-222 121-163 (343)
364 PRK05973 replicative DNA helic 93.1 0.23 4.9E-06 47.1 6.3 65 157-233 50-114 (237)
365 PRK10436 hypothetical protein; 93.0 0.14 3E-06 53.7 5.2 37 160-197 204-242 (462)
366 PRK14963 DNA polymerase III su 93.0 0.62 1.3E-05 49.6 10.1 16 175-190 39-54 (504)
367 PF03237 Terminase_6: Terminas 92.9 1.2 2.6E-05 45.2 12.0 128 176-323 1-136 (384)
368 PRK09112 DNA polymerase III su 92.9 1.2 2.6E-05 45.1 11.5 39 282-321 139-178 (351)
369 PRK08006 replicative DNA helic 92.8 1.5 3.4E-05 46.2 12.7 115 171-297 223-349 (471)
370 PRK14965 DNA polymerase III su 92.8 1.1 2.4E-05 48.6 11.9 41 282-323 117-157 (576)
371 PRK14954 DNA polymerase III su 92.8 0.47 1E-05 51.6 8.9 41 282-323 125-165 (620)
372 KOG0742 AAA+-type ATPase [Post 92.8 0.2 4.4E-06 50.2 5.5 16 173-188 385-400 (630)
373 PRK14952 DNA polymerase III su 92.8 0.62 1.3E-05 50.3 9.8 41 283-324 117-157 (584)
374 PRK06067 flagellar accessory p 92.8 1.4 3E-05 41.8 11.3 52 171-233 24-75 (234)
375 PRK06090 DNA polymerase III su 92.7 1 2.2E-05 44.9 10.5 43 282-325 106-148 (319)
376 PRK14721 flhF flagellar biosyn 92.7 0.3 6.4E-06 50.4 6.9 130 172-335 191-323 (420)
377 cd00561 CobA_CobO_BtuR ATP:cor 92.7 1.4 2.9E-05 39.1 10.2 52 282-333 93-147 (159)
378 PRK14950 DNA polymerase III su 92.7 0.99 2.1E-05 49.2 11.4 41 282-323 118-158 (585)
379 cd01130 VirB11-like_ATPase Typ 92.6 0.37 8.1E-06 44.0 6.9 31 158-188 10-41 (186)
380 TIGR00665 DnaB replicative DNA 92.6 1.5 3.2E-05 46.0 12.2 113 171-297 194-318 (434)
381 PF01443 Viral_helicase1: Vira 92.5 0.14 3.1E-06 48.4 4.2 14 175-188 1-14 (234)
382 PRK14951 DNA polymerase III su 92.5 0.56 1.2E-05 50.9 8.9 42 283-325 123-164 (618)
383 PRK05748 replicative DNA helic 92.4 1.4 3.1E-05 46.3 11.8 114 171-297 202-327 (448)
384 PRK08939 primosomal protein Dn 92.4 1.2 2.6E-05 44.2 10.5 48 282-329 215-266 (306)
385 KOG0741 AAA+-type ATPase [Post 92.3 3.6 7.8E-05 43.0 13.8 69 140-220 494-574 (744)
386 PRK00440 rfc replication facto 92.3 2 4.3E-05 42.8 12.3 37 284-321 102-139 (319)
387 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.25 5.3E-06 47.2 5.4 53 171-234 20-72 (237)
388 PRK14969 DNA polymerase III su 92.3 0.73 1.6E-05 49.4 9.5 30 282-312 117-146 (527)
389 cd01125 repA Hexameric Replica 92.3 1.2 2.7E-05 42.4 10.3 56 174-229 3-63 (239)
390 PHA03372 DNA packaging termina 92.2 0.81 1.8E-05 48.7 9.4 126 172-323 202-336 (668)
391 KOG2028 ATPase related to the 92.2 0.53 1.1E-05 46.7 7.4 37 284-324 222-258 (554)
392 COG1485 Predicted ATPase [Gene 92.1 4 8.6E-05 40.6 13.4 108 173-328 66-175 (367)
393 PRK10689 transcription-repair 92.0 0.83 1.8E-05 53.5 10.3 77 380-456 648-728 (1147)
394 PRK07471 DNA polymerase III su 92.0 2.4 5.1E-05 43.2 12.4 41 282-323 139-179 (365)
395 PF10593 Z1: Z1 domain; Inter 91.8 0.69 1.5E-05 44.0 7.8 93 406-503 110-207 (239)
396 PRK07004 replicative DNA helic 91.8 1.2 2.6E-05 46.9 10.4 112 171-297 212-337 (460)
397 TIGR02538 type_IV_pilB type IV 91.7 0.24 5.3E-06 53.5 5.3 38 159-197 301-340 (564)
398 PF01637 Arch_ATPase: Archaeal 91.7 0.28 6.1E-06 46.1 5.2 58 264-325 102-166 (234)
399 PRK08760 replicative DNA helic 91.7 1.2 2.7E-05 47.0 10.4 114 171-297 228-352 (476)
400 PRK07993 DNA polymerase III su 91.7 0.67 1.5E-05 46.6 8.0 33 158-190 3-42 (334)
401 KOG1513 Nuclear helicase MOP-3 91.6 0.2 4.4E-06 54.0 4.3 156 156-324 263-454 (1300)
402 PRK13764 ATPase; Provisional 91.6 0.39 8.5E-06 51.8 6.5 26 171-197 256-281 (602)
403 TIGR00678 holB DNA polymerase 91.6 1.6 3.4E-05 39.9 9.8 41 282-323 94-134 (188)
404 TIGR00959 ffh signal recogniti 91.6 3.4 7.3E-05 43.0 13.1 20 174-193 101-120 (428)
405 COG1132 MdlB ABC-type multidru 91.6 0.28 6.1E-06 53.4 5.6 31 282-312 481-511 (567)
406 COG1110 Reverse gyrase [DNA re 91.5 0.65 1.4E-05 51.9 8.1 92 380-471 124-230 (1187)
407 KOG1133 Helicase of the DEAD s 91.5 0.27 5.8E-06 52.5 5.0 104 382-489 630-780 (821)
408 TIGR00708 cobA cob(I)alamin ad 91.5 1.3 2.9E-05 39.7 8.8 52 282-333 95-149 (173)
409 PRK06647 DNA polymerase III su 91.4 0.82 1.8E-05 49.3 8.8 41 282-323 117-157 (563)
410 TIGR02639 ClpA ATP-dependent C 91.4 3.3 7.2E-05 46.5 13.9 19 172-190 203-221 (731)
411 COG0552 FtsY Signal recognitio 91.3 2.9 6.2E-05 41.3 11.4 128 175-335 142-280 (340)
412 cd01126 TraG_VirD4 The TraG/Tr 91.2 0.23 4.9E-06 51.2 4.2 47 174-232 1-47 (384)
413 PRK05595 replicative DNA helic 91.2 1.1 2.3E-05 47.2 9.3 40 171-219 200-239 (444)
414 KOG1133 Helicase of the DEAD s 91.1 12 0.00027 40.5 16.5 43 283-337 525-567 (821)
415 COG2109 BtuR ATP:corrinoid ade 91.1 3.2 7E-05 37.4 10.6 141 175-334 31-175 (198)
416 PRK06321 replicative DNA helic 91.1 2.8 6E-05 44.3 12.1 112 172-297 226-349 (472)
417 PRK14948 DNA polymerase III su 91.0 2.2 4.7E-05 46.7 11.5 19 173-191 39-57 (620)
418 PRK10867 signal recognition pa 90.9 3.3 7.1E-05 43.1 12.3 20 174-193 102-121 (433)
419 PRK08506 replicative DNA helic 90.9 2.4 5.1E-05 44.9 11.5 113 171-297 191-315 (472)
420 PF02534 T4SS-DNA_transf: Type 90.8 0.3 6.5E-06 51.8 4.8 49 173-233 45-93 (469)
421 TIGR02237 recomb_radB DNA repa 90.8 1.1 2.4E-05 41.6 8.2 39 171-219 11-49 (209)
422 KOG0738 AAA+-type ATPase [Post 90.7 1.9 4.2E-05 43.3 9.7 16 173-188 246-261 (491)
423 PHA00729 NTP-binding motif con 90.7 2.3 4.9E-05 40.0 9.9 16 174-189 19-34 (226)
424 PRK07399 DNA polymerase III su 90.7 1.7 3.7E-05 43.3 9.7 58 263-322 104-161 (314)
425 PRK09165 replicative DNA helic 90.6 2 4.4E-05 45.7 10.8 124 171-298 216-355 (497)
426 PF06733 DEAD_2: DEAD_2; Inte 90.6 0.11 2.3E-06 47.0 1.0 44 256-299 115-160 (174)
427 cd01129 PulE-GspE PulE/GspE Th 90.5 0.42 9.2E-06 46.3 5.1 37 160-197 66-104 (264)
428 PRK10416 signal recognition pa 90.5 3.8 8.3E-05 40.8 12.0 53 283-335 195-255 (318)
429 KOG0734 AAA+-type ATPase conta 90.5 2.4 5.2E-05 44.3 10.5 43 284-326 396-449 (752)
430 TIGR00767 rho transcription te 90.5 0.74 1.6E-05 46.9 6.9 18 171-188 167-184 (415)
431 KOG0740 AAA+-type ATPase [Post 90.4 0.89 1.9E-05 46.6 7.4 58 283-340 244-315 (428)
432 PF05729 NACHT: NACHT domain 90.4 2.6 5.6E-05 37.0 9.9 24 174-198 2-25 (166)
433 cd03115 SRP The signal recogni 90.3 13 0.00028 33.2 14.9 16 175-190 3-18 (173)
434 PRK04841 transcriptional regul 90.2 3.9 8.5E-05 47.2 13.7 42 284-325 121-163 (903)
435 PF13555 AAA_29: P-loop contai 90.2 0.39 8.5E-06 35.0 3.4 24 172-197 23-46 (62)
436 PF02572 CobA_CobO_BtuR: ATP:c 90.2 6.6 0.00014 35.2 12.0 140 175-333 6-148 (172)
437 COG2909 MalT ATP-dependent tra 90.1 4.4 9.6E-05 44.9 12.6 41 285-325 130-171 (894)
438 TIGR02533 type_II_gspE general 90.1 0.37 8.1E-06 51.0 4.6 37 159-196 227-265 (486)
439 KOG2228 Origin recognition com 90.0 6 0.00013 39.2 12.2 56 270-325 123-182 (408)
440 KOG0730 AAA+-type ATPase [Post 90.0 2 4.4E-05 46.0 9.8 58 129-189 425-485 (693)
441 PF06745 KaiC: KaiC; InterPro 90.0 0.37 8E-06 45.5 4.2 53 171-233 18-70 (226)
442 PRK03992 proteasome-activating 90.0 1.3 2.7E-05 45.7 8.4 17 172-188 165-181 (389)
443 COG1222 RPT1 ATP-dependent 26S 90.0 4.1 8.8E-05 40.6 11.2 17 172-188 185-201 (406)
444 PRK14953 DNA polymerase III su 89.9 1.3 2.8E-05 47.0 8.5 41 282-323 117-157 (486)
445 PRK11034 clpA ATP-dependent Cl 89.9 2.8 6E-05 47.0 11.4 43 286-328 280-327 (758)
446 PRK09087 hypothetical protein; 89.9 1.3 2.8E-05 41.9 7.8 38 287-326 90-129 (226)
447 COG0630 VirB11 Type IV secreto 89.9 0.61 1.3E-05 46.4 5.7 56 156-222 126-182 (312)
448 TIGR00416 sms DNA repair prote 89.8 3.4 7.3E-05 43.5 11.4 91 171-297 93-183 (454)
449 cd01131 PilT Pilus retraction 89.8 0.5 1.1E-05 43.7 4.8 21 175-196 4-24 (198)
450 KOG1806 DEAD box containing he 89.8 0.61 1.3E-05 51.9 5.9 73 153-233 734-806 (1320)
451 TIGR02868 CydC thiol reductant 89.8 0.39 8.4E-06 51.8 4.6 18 170-187 359-376 (529)
452 COG2255 RuvB Holliday junction 89.7 1.9 4E-05 41.6 8.4 16 174-189 54-69 (332)
453 PRK13897 type IV secretion sys 89.7 0.47 1E-05 51.4 5.1 49 173-233 159-207 (606)
454 KOG0344 ATP-dependent RNA heli 89.7 2.4 5.2E-05 44.7 9.9 98 180-294 365-466 (593)
455 TIGR03819 heli_sec_ATPase heli 89.7 0.94 2E-05 45.6 7.0 63 147-222 154-217 (340)
456 PRK04328 hypothetical protein; 89.7 0.64 1.4E-05 44.7 5.6 53 171-234 22-74 (249)
457 PRK09376 rho transcription ter 89.6 1.5 3.2E-05 44.6 8.2 26 171-197 168-193 (416)
458 PRK07133 DNA polymerase III su 89.6 1.5 3.3E-05 48.3 8.8 42 283-325 117-158 (725)
459 COG3267 ExeA Type II secretory 89.2 2.3 4.9E-05 40.4 8.5 20 171-190 49-69 (269)
460 PRK07413 hypothetical protein; 89.1 3.8 8.2E-05 41.6 10.6 200 109-334 143-359 (382)
461 PF12846 AAA_10: AAA-like doma 88.9 0.67 1.5E-05 45.5 5.3 43 172-224 1-43 (304)
462 KOG0741 AAA+-type ATPase [Post 88.9 1.2 2.6E-05 46.4 7.0 42 282-323 322-378 (744)
463 PHA00012 I assembly protein 88.9 5.7 0.00012 39.3 11.3 23 175-197 4-26 (361)
464 PRK08451 DNA polymerase III su 88.8 0.85 1.9E-05 48.6 6.2 41 282-323 115-155 (535)
465 PRK09435 membrane ATPase/prote 88.8 7.6 0.00017 38.9 12.5 14 175-188 59-72 (332)
466 TIGR00763 lon ATP-dependent pr 88.7 1.7 3.7E-05 49.1 8.9 18 172-189 347-364 (775)
467 TIGR03878 thermo_KaiC_2 KaiC d 88.6 1.1 2.4E-05 43.3 6.4 37 171-217 35-71 (259)
468 COG1618 Predicted nucleotide k 88.6 0.29 6.2E-06 42.9 2.0 117 173-311 6-129 (179)
469 PF00437 T2SE: Type II/IV secr 88.5 0.68 1.5E-05 45.0 5.0 43 170-222 125-167 (270)
470 KOG0058 Peptide exporter, ABC 88.5 1 2.2E-05 48.8 6.4 41 282-322 620-660 (716)
471 PRK09354 recA recombinase A; P 88.4 0.95 2.1E-05 45.5 5.9 44 171-224 59-102 (349)
472 PRK10865 protein disaggregatio 88.2 5.1 0.00011 45.8 12.3 19 172-190 199-217 (857)
473 CHL00095 clpC Clp protease ATP 88.1 4.5 9.7E-05 46.1 11.8 20 172-191 200-219 (821)
474 PRK06305 DNA polymerase III su 88.0 4.4 9.6E-05 42.6 10.8 40 283-323 120-159 (451)
475 COG0513 SrmB Superfamily II DN 88.0 12 0.00026 40.1 14.3 69 384-456 102-180 (513)
476 PRK14971 DNA polymerase III su 88.0 1.9 4.2E-05 47.1 8.4 41 282-323 119-159 (614)
477 TIGR03346 chaperone_ClpB ATP-d 87.9 6.5 0.00014 45.0 12.9 19 172-190 194-212 (852)
478 TIGR02640 gas_vesic_GvpN gas v 87.9 0.64 1.4E-05 45.1 4.2 27 164-190 13-39 (262)
479 PRK05636 replicative DNA helic 87.7 3.8 8.3E-05 43.6 10.3 18 173-190 266-283 (505)
480 PF10412 TrwB_AAD_bind: Type I 87.7 0.72 1.6E-05 47.4 4.7 46 169-224 12-57 (386)
481 COG0467 RAD55 RecA-superfamily 87.6 1.1 2.4E-05 43.3 5.7 54 171-235 22-75 (260)
482 KOG0732 AAA+-type ATPase conta 87.6 1.8 3.8E-05 49.2 7.8 54 133-189 260-316 (1080)
483 PF13696 zf-CCHC_2: Zinc knuck 87.5 0.42 9.2E-06 29.5 1.7 19 31-49 3-21 (32)
484 PF00098 zf-CCHC: Zinc knuckle 87.5 0.23 4.9E-06 26.4 0.5 13 37-49 1-13 (18)
485 COG1122 CbiO ABC-type cobalt t 87.5 1.6 3.5E-05 41.4 6.6 32 284-315 156-187 (235)
486 KOG0737 AAA+-type ATPase [Post 87.5 1.8 3.9E-05 43.2 7.0 52 135-189 89-144 (386)
487 cd01393 recA_like RecA is a b 87.4 2.8 6.1E-05 39.3 8.3 46 171-220 18-63 (226)
488 COG3972 Superfamily I DNA and 87.4 1.2 2.7E-05 45.9 5.9 80 145-234 151-230 (660)
489 PRK07414 cob(I)yrinic acid a,c 87.3 9.4 0.0002 34.4 10.9 139 175-333 24-167 (178)
490 CHL00176 ftsH cell division pr 87.3 2.8 6E-05 46.0 9.1 18 172-189 216-233 (638)
491 KOG0339 ATP-dependent RNA heli 87.3 6.7 0.00015 40.8 11.0 72 381-456 296-376 (731)
492 COG1200 RecG RecG-like helicas 87.2 3.9 8.5E-05 44.2 9.8 87 368-456 299-390 (677)
493 PRK13850 type IV secretion sys 87.2 0.7 1.5E-05 50.7 4.4 49 172-232 139-187 (670)
494 TIGR03345 VI_ClpV1 type VI sec 87.1 7.6 0.00016 44.3 12.8 29 162-190 192-226 (852)
495 COG1197 Mfd Transcription-repa 87.1 3.8 8.3E-05 47.0 10.1 80 377-456 639-722 (1139)
496 TIGR02788 VirB11 P-type DNA tr 86.6 1.1 2.3E-05 44.6 5.2 20 169-188 141-160 (308)
497 TIGR03743 SXT_TraD conjugative 86.6 1.6 3.5E-05 47.8 6.8 54 172-235 176-231 (634)
498 TIGR03754 conj_TOL_TraD conjug 86.4 2.3 5E-05 46.2 7.8 55 172-236 180-236 (643)
499 PF13481 AAA_25: AAA domain; P 86.4 2.1 4.5E-05 39.1 6.6 63 171-235 31-94 (193)
500 PRK09183 transposase/IS protei 86.3 1.7 3.7E-05 42.0 6.2 22 169-190 99-120 (259)
No 1
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.8e-101 Score=812.35 Aligned_cols=495 Identities=74% Similarity=1.161 Sum_probs=457.5
Q ss_pred cCCCCCCCCccccchhhhhccccCCCCCeeeeecccccccccccCCcccchHHhHHHHhhhhhccCCCccCCCCCCCCCC
Q 009494 10 PHGDGVDDSQSDVKEWSKDQREALPEEPKCVICGRYGEYICDETDDDVCSLECKQKLLCRVANANRGMRVVPPPPPERLP 89 (533)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (533)
..+.++++++++|||||++||||+||||+|++||||||||||||||||||+|||++++.+..... ..+..|.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 78 (518)
T PLN00206 2 NEEGCNPHEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQALLRRVAKSR---VAVGAPKPKRLP 78 (518)
T ss_pred CCCCCCcccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHHHHHHHHhhcc---CCcCCCchhhcC
Confidence 45677888899999999999999999999999999999999999999999999999998875432 234567778889
Q ss_pred CccccCccccCCcCcCCCCCCHHHHHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 009494 90 ATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSA 169 (533)
Q Consensus 90 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~ 169 (533)
+++++||..++. ...+++..+++.+++.+++.+.|..+|.|+.+|++++|++.++++|.+.||..|||+|.++||.+
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~i 155 (518)
T PLN00206 79 ATDECFYVRDPG---STSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA 155 (518)
T ss_pred CcCCcCCccCcc---hhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999997665 13458999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcc
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
++|+|++++||||||||++|++|++.++...+........++++||++|||+||.|+++.++.+....++++..++||..
T Consensus 156 l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~ 235 (518)
T PLN00206 156 LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDA 235 (518)
T ss_pred hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcc
Confidence 99999999999999999999999999987644333333468899999999999999999999999988999999999999
Q ss_pred hHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHH
Q 009494 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 329 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~ 329 (533)
...+...+..+++|+|+||++|.+++.++.+.++++++||+||||+|++++|+.++..++..++.+|++++|||+++.++
T Consensus 236 ~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~ 315 (518)
T PLN00206 236 MPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVE 315 (518)
T ss_pred hHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHH
Confidence 99998899999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeE
Q 009494 330 KMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 330 ~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~ 409 (533)
.++..+..++..+..+........+.+...++....+...+.+++.......+++||||+++..++.+++.|....++.+
T Consensus 316 ~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~ 395 (518)
T PLN00206 316 KFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKA 395 (518)
T ss_pred HHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcce
Confidence 99999999999999888877778888999999988888899999887666667999999999999999999985678999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 410 LSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 410 ~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
..+||++++.+|..+++.|++|+++|||||++++||+|+|++++||+||+|.++.+|+||+|||||.|..|.+++|++++
T Consensus 396 ~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 396 LSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCchhh
Q 009494 490 NKNLFQELVDILKSSGAVRLM 510 (533)
Q Consensus 490 ~~~~~~~l~~~l~~~~~~~~~ 510 (533)
+...+.++++.|+.+++..+.
T Consensus 476 ~~~~~~~l~~~l~~~~~~vp~ 496 (518)
T PLN00206 476 DRNLFPELVALLKSSGAAIPR 496 (518)
T ss_pred HHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999997543
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-78 Score=608.25 Aligned_cols=422 Identities=34% Similarity=0.590 Sum_probs=377.5
Q ss_pred CCCCccccCccccCCcCcCCCCCCHHHHHHHHHhcCceeecCC-CCCcccCcc---------------------------
Q 009494 87 RLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDA-VPAPILSFS--------------------------- 138 (533)
Q Consensus 87 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~~~~f~--------------------------- 138 (533)
.++++++++|..++. .......+.+..++..++.+++.. +|.|..+|+
T Consensus 17 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (519)
T KOG0331|consen 17 DLSPFDKNFYKEHPS----VKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAA 92 (519)
T ss_pred ccCcccccccccccc----cccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchh
Confidence 455667777776654 455555555666777777777654 666665544
Q ss_pred --cCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE
Q 009494 139 --SCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 139 --~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
++++++.+..+++..||+.|||+|.++||.++.|+|++..|.||||||++|++|++.++.... .....+.+|++||+
T Consensus 93 f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~-~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 93 FQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ-GKLSRGDGPIVLVL 171 (519)
T ss_pred hhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc-ccccCCCCCeEEEE
Confidence 455666777778899999999999999999999999999999999999999999999998631 12234678999999
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhh
Q 009494 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~ 296 (533)
+||||||.|+...+..++..+.+++.++|||.+...|...+.++++|+|+||+||.++++.+.++++++.|+|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHhC-C-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC--CCCCcCceEEEEEecchhHHHHHHH
Q 009494 297 LQRGFRDQVMQIFRAI-S-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 297 ~~~~~~~~~~~i~~~~-~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~v~~~~~~~~~~~k~~~l~~ 372 (533)
+++||+++++.|+..+ + ..|++++|||||.+++.++..++.+++.+.++.. ...+.++.|+..+++...|...|..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 3 3479999999999999999999999999999865 3677889999999998889999998
Q ss_pred HHhhcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 373 ILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 373 ~l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
+|.... ..++++||||++++.|+.|+..|+ ..++++..+||+.+|.+|..+++.|++|+..|||||++++||||+|+|
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~-~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLR-RKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHH-hcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 888775 456799999999999999999998 778999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCCchhhHHhH
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAVRLMTFCY 514 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 514 (533)
++|||||+|.+.++|+||+||+||+|+.|.|++|+...+......+.+.|+..+|.....+..
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999986554444
No 3
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.8e-74 Score=561.49 Aligned_cols=404 Identities=34% Similarity=0.604 Sum_probs=381.5
Q ss_pred CCCCCCHHHHHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCc
Q 009494 105 GFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSG 184 (533)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsG 184 (533)
....|++.+|..|+..+.|.++|..+|+|+.+|++.+||.++++.+.+.||..|+|+|++++|..++.+|+|..|.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhc--ccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCc
Q 009494 185 KTASFLVPVISQCANIRLH--HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVE 262 (533)
Q Consensus 185 KT~~~llp~l~~l~~~~~~--~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 262 (533)
||++|++|++..+...+.. ......+|.++|++|||+|++|+.++..+|+..++++++.+.||.+..++-..+..+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 9999999999988776522 22456799999999999999999999999999999999999999999999889999999
Q ss_pred eeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC--------------------------CCc
Q 009494 263 LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS--------------------------LPQ 316 (533)
Q Consensus 263 Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~--------------------------~~q 316 (533)
|+|+||++|++.+.+..+.++++.+||+||||+|.|+||++++..++..++ .+|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 999999999999999999999999999999999999999999999999882 158
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~ 396 (533)
+++||||+|+.++.+++.++.+|+.+.++....+.+.+.|.+..+..+.|...|.++|.+. ..+|+|||+|+++.|+.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999775 57899999999999999
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCC
Q 009494 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 397 l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~ 476 (533)
|++.|. ..|+.+..+||+.++++|+.+++.|++|..+|||||++++||||+|+|.+|||||+++|+++|.|||||+||+
T Consensus 533 lAk~Le-K~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRA 611 (673)
T KOG0333|consen 533 LAKILE-KAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRA 611 (673)
T ss_pred HHHHHh-hccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccc
Confidence 999999 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCcCHHHHHHHHHHHHH---cCCchhhH
Q 009494 477 GDEGTAIVFVNEENKNLFQELVDILKS---SGAVRLMT 511 (533)
Q Consensus 477 g~~g~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~ 511 (533)
|+.|.|++|+++.|...|.+|.+.|.. +++++..+
T Consensus 612 Gk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 612 GKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred ccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 999999999999999999999999985 45555333
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.6e-71 Score=585.73 Aligned_cols=424 Identities=34% Similarity=0.582 Sum_probs=386.8
Q ss_pred CCCCCCccccCccccCCcCcCCCCCCHHHHHHHHHhcCcee-ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHH
Q 009494 85 PERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQM 163 (533)
Q Consensus 85 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~ 163 (533)
...+++++++||.+++. +..++.++++.++++.++.+ .|..+|.|+.+|++++|++.++++|.+.||.+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~ 158 (545)
T PTZ00110 83 SINLVPFEKNFYKEHPE----VSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQV 158 (545)
T ss_pred cccccchhhhcccCChh----hhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHH
Confidence 34678899999998776 88999999999999999986 68999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEE
Q 009494 164 QAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTAL 243 (533)
Q Consensus 164 ~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~ 243 (533)
++||.+++|+|+|++||||||||++|++|++.++...+.. ....++.+|||+|||+||.|+.++++++....++++..
T Consensus 159 ~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~--~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~ 236 (545)
T PTZ00110 159 QGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL--RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTV 236 (545)
T ss_pred HHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEE
Confidence 9999999999999999999999999999999988754321 22457899999999999999999999999888999999
Q ss_pred EEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEec
Q 009494 244 VVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSA 322 (533)
Q Consensus 244 ~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SA 322 (533)
++||.+...+...+..+++|+|+||++|.+++.+....++++++||+||||+|++++|..++..++..+ +.+|++++||
T Consensus 237 ~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SA 316 (545)
T PTZ00110 237 AYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSA 316 (545)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEe
Confidence 999999999999999999999999999999999988899999999999999999999999999999988 6789999999
Q ss_pred cCCHHHHHHHHhhCC-CeEEEEeCCCC-CCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHH
Q 009494 323 TISQEVEKMSSSISK-DIVVVSVGKPN-MPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNA 400 (533)
Q Consensus 323 T~~~~~~~l~~~~~~-~~~~i~~~~~~-~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~ 400 (533)
|+|.+++.+++.++. .++.+.++... .....+.+.+..+....|...|..++........++||||+++..|+.++..
T Consensus 317 T~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~ 396 (545)
T PTZ00110 317 TWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKE 396 (545)
T ss_pred CCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHH
Confidence 999999999988875 57777766543 3446677888888888888888888877655678999999999999999999
Q ss_pred HHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCcc
Q 009494 401 ISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG 480 (533)
Q Consensus 401 L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g 480 (533)
|. ..++.+..+||++++.+|..+++.|++|+++|||||++++||||+|++++||+||+|.++++|+||+||+||.|..|
T Consensus 397 L~-~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G 475 (545)
T PTZ00110 397 LR-LDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG 475 (545)
T ss_pred HH-HcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc
Confidence 98 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcCHHHHHHHHHHHHHcCCchhhHHhHH
Q 009494 481 TAIVFVNEENKNLFQELVDILKSSGAVRLMTFCYI 515 (533)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 515 (533)
.|++|+++++...+..+++.|+.++|..+..+..+
T Consensus 476 ~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 476 ASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred eEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 99999999999999999999999999865544443
No 5
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-72 Score=546.39 Aligned_cols=420 Identities=30% Similarity=0.501 Sum_probs=395.8
Q ss_pred CCCCCCCccccCccccCCcCcCCCCCCHHHHHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHH
Q 009494 84 PPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQM 163 (533)
Q Consensus 84 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~ 163 (533)
....++|++++||.++.+ |+.++..+...++..+++.+.|..+|+|+.+|+++++++.|+.++.+.-|.+|||+|.
T Consensus 176 s~i~y~p~~kdfy~e~es----I~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~ 251 (731)
T KOG0339|consen 176 SEIDYEPFNKDFYEEHES----IEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQC 251 (731)
T ss_pred hhccccccccccccChhh----hhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccc
Confidence 345789999999999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEE
Q 009494 164 QAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTAL 243 (533)
Q Consensus 164 ~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~ 243 (533)
+++|..++|++++-.|.||||||.+|+.|++.+++.++... .+.+|..||++|||+||.|++.++++|++..++++++
T Consensus 252 qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~--~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~ 329 (731)
T KOG0339|consen 252 QALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK--PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVA 329 (731)
T ss_pred cccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc--CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEE
Confidence 99999999999999999999999999999999999876543 3789999999999999999999999999999999999
Q ss_pred EEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEec
Q 009494 244 VVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSA 322 (533)
Q Consensus 244 ~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SA 322 (533)
+|||.+..+|...|+.+++||||||+||++++....+++.+++|+|+||+|+|+++||.++++.|..++ +++|+|+|||
T Consensus 330 ~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsa 409 (731)
T KOG0339|consen 330 VYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSA 409 (731)
T ss_pred eecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred cCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhH-HHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHH
Q 009494 323 TISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKK-KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAI 401 (533)
Q Consensus 323 T~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k-~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L 401 (533)
|++..++.+++.++.+|+.+..+.....+..+.|.+..+.+..+ ...|+.-|-... ..+++|||+.-+..++.++..|
T Consensus 410 Tf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~~~e~i~a~L 488 (731)
T KOG0339|consen 410 TFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS-SEGKVLIFVTKKADAEEIAANL 488 (731)
T ss_pred cchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhc-cCCcEEEEEeccCCHHHHHHHh
Confidence 99999999999999999999999988899999999988887654 444555444433 3568999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccE
Q 009494 402 SVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT 481 (533)
Q Consensus 402 ~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~ 481 (533)
+ ..++.+..+||+|.|.+|.+++..|+.+..+|||+|++++||+|||.+.+|||||+-.+++.|.||+||+||+|.+|.
T Consensus 489 k-lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGv 567 (731)
T KOG0339|consen 489 K-LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGV 567 (731)
T ss_pred c-cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccce
Confidence 8 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHHcCCchhhH
Q 009494 482 AIVFVNEENKNLFQELVDILKSSGAVRLMT 511 (533)
Q Consensus 482 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 511 (533)
++++++++|.++.-.|++.|+.+||.++-.
T Consensus 568 ayTlvTeKDa~fAG~LVnnLe~agQnVP~~ 597 (731)
T KOG0339|consen 568 AYTLVTEKDAEFAGHLVNNLEGAGQNVPDE 597 (731)
T ss_pred eeEEechhhHHHhhHHHHHHhhccccCChH
Confidence 999999999999999999999999975433
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.9e-74 Score=541.41 Aligned_cols=419 Identities=31% Similarity=0.563 Sum_probs=388.9
Q ss_pred CCCCCHHHHHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCch
Q 009494 106 FQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGK 185 (533)
Q Consensus 106 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGK 185 (533)
+.+++.++.+..|+++.|.+.|+.+|+||.+|.++.+|..+++.|++.|+.+|||+|.|.+|.+++|||.+..|-|||||
T Consensus 141 ir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGK 220 (610)
T KOG0341|consen 141 IRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 220 (610)
T ss_pred HHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhc-ccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC------CCeEEEEEcCcchHHHHHHHH
Q 009494 186 TASFLVPVISQCANIRLH-HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL------PFKTALVVGGDAMARQVYRIQ 258 (533)
Q Consensus 186 T~~~llp~l~~l~~~~~~-~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~ 258 (533)
|++|.+|++..++.+... ....+.||..||+||+|+||.|.++.+..+...+ .++..+..||.+..+|...++
T Consensus 221 TlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~ 300 (610)
T KOG0341|consen 221 TLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR 300 (610)
T ss_pred eEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh
Confidence 999999999988876543 4466889999999999999999999888775432 378899999999999999999
Q ss_pred cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCC
Q 009494 259 QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISK 337 (533)
Q Consensus 259 ~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~ 337 (533)
.|.+|+|+||++|.+++.+..+++.-+.|+++||||+|.|+||+..++.|+.++ ..+|+++||||+|..++.++++-+.
T Consensus 301 ~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALV 380 (610)
T KOG0341|consen 301 RGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALV 380 (610)
T ss_pred cCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999 6799999999999999999999999
Q ss_pred CeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCC
Q 009494 338 DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 417 (533)
Q Consensus 338 ~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~ 417 (533)
.|+.++++...+..-++.|.+.++..+.|.-.|++-|. ...+|+||||..+..++.+.++|- ..|..++.+||+.+
T Consensus 381 KPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLL-lKGVEavaIHGGKD 456 (610)
T KOG0341|consen 381 KPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLL-LKGVEAVAIHGGKD 456 (610)
T ss_pred cceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHH-HccceeEEeecCcc
Confidence 99999999999999888888888888888777777664 446799999999999999999998 88999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc-CHHHHHH
Q 009494 418 MKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQE 496 (533)
Q Consensus 418 ~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~~~~~~ 496 (533)
|++|...+..|+.|+-+|||||++++.|+|+|++.+|||||+|..++.|+||+||+||.|++|.|.+|++.+ +...+.+
T Consensus 457 QedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlD 536 (610)
T KOG0341|consen 457 QEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLD 536 (610)
T ss_pred hhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 5677788
Q ss_pred HHHHHHHcCCc-----------------------hhhHHhHHhcCccCCCCCCCC
Q 009494 497 LVDILKSSGAV-----------------------RLMTFCYILGREFTKSPPMDG 528 (533)
Q Consensus 497 l~~~l~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~ 528 (533)
+..+|.+++|. +...+|..|||+|++||++++
T Consensus 537 LK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdCPKle~ 591 (610)
T KOG0341|consen 537 LKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDCPKLEA 591 (610)
T ss_pred HHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccCchhhh
Confidence 88888877664 345699999999999999875
No 7
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-72 Score=530.52 Aligned_cols=419 Identities=32% Similarity=0.528 Sum_probs=376.5
Q ss_pred CCCCCccccCccccCCcCcCCCCCCHHHHHHHHHhcC-ceeec------CCCCCcccCccc-CCCCHHHHHHHHHcCCCC
Q 009494 86 ERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLE-INVKG------DAVPAPILSFSS-CSLSQKLLQNIEAAGYDM 157 (533)
Q Consensus 86 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~------~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~ 157 (533)
.++||..++||.+.+. .+.|+..+.++.+++.. +.+.. .++|+|.-+|++ +.-.+++++++++.||.+
T Consensus 167 ~~lpPi~knfYke~~e----~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqK 242 (629)
T KOG0336|consen 167 AKLPPIKKNFYKESNE----TSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQK 242 (629)
T ss_pred ccCCchhhhhhhcCch----hccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCC
Confidence 3578888999998777 78999999999998864 54432 378999999998 477899999999999999
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
|+|+|.||||.+++|.|++.+|.||+|||++||+|-+.++..++... ....+|.+|+++|||+|+.|+.-+.+++. ..
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~-~qr~~p~~lvl~ptreLalqie~e~~kys-yn 320 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR-EQRNGPGVLVLTPTRELALQIEGEVKKYS-YN 320 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh-hccCCCceEEEeccHHHHHHHHhHHhHhh-hc
Confidence 99999999999999999999999999999999999999887665433 24678999999999999999999988774 34
Q ss_pred CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCc
Q 009494 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 316 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q 316 (533)
+++.+++|||.+..+|+..++++.+|+++||++|.++...+.+++..+.|+|+||||+|+||+|++++++|+-.+ +++|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998777 8999
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCC-CCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNM-PNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~ 395 (533)
+++.|||||..+..++..++++|+.+.++.... ....+.|.++......| ..+...+........++||||.++..|+
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k-~~~~~~f~~~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEK-LEIVQFFVANMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHH-HHHHHHHHHhcCCCceEEEEEechhhhh
Confidence 999999999999999999999999998887643 44667777744444444 4555555555566789999999999999
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccC
Q 009494 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 396 ~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR 475 (533)
.|+..|. ..|+.+-.+||+..|.+|+..+++|++|+++|||||++++||+|++++.||+|||+|.++++|+||+||+||
T Consensus 480 ~LSSd~~-l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR 558 (629)
T KOG0336|consen 480 HLSSDFC-LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR 558 (629)
T ss_pred hccchhh-hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccccc
Confidence 9999998 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCcCHHHHHHHHHHHHHcCCchhhHH
Q 009494 476 MGDEGTAIVFVNEENKNLFQELVDILKSSGAVRLMTF 512 (533)
Q Consensus 476 ~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 512 (533)
+|+.|.+++|+..+|...+.+|+++|+.+.|+.+..+
T Consensus 559 aGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 559 AGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred CCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 9999999999999999999999999999999865443
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-70 Score=513.88 Aligned_cols=365 Identities=30% Similarity=0.506 Sum_probs=347.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
...+|.++++.+.+.++++..||..||++|+++||.++.|+++|+.|.||||||.+|++|++++++.. ...++
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------p~~~~ 131 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-------PKLFF 131 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-------CCCce
Confidence 45689999999999999999999999999999999999999999999999999999999999999873 34588
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHH-cCCCCCCCeeEEEEe
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM-KHDIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~-~~~~~l~~~~~vVvD 291 (533)
+||++||||||.|+.+++..++.+.|+++..+.||.....|...+.+.++|+|||||+|++++. .+.+++..++++|+|
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHH
Q 009494 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l 370 (533)
|||+++++.|...+..|+..+ ..+|+++||||++..+.++...-+.+|..+.+.......+.+.|.+..+....|...|
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 999999999999999999999 5689999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 009494 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
+.++.... +.++||||++...++.++-.|. ..|+.+..+||.|++..|.-.++.|++|..+|||||++++||+|+|.
T Consensus 292 V~ll~e~~--g~s~iVF~~t~~tt~~la~~L~-~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~ 368 (476)
T KOG0330|consen 292 VYLLNELA--GNSVIVFCNTCNTTRFLALLLR-NLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPH 368 (476)
T ss_pred HHHHHhhc--CCcEEEEEeccchHHHHHHHHH-hcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCC
Confidence 99998644 4789999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCCc
Q 009494 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAV 507 (533)
Q Consensus 451 v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 507 (533)
|++|||||+|.+..+|+||+||++|+|.+|.+++|++..|.+.+.++...+......
T Consensus 369 Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 369 VDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred ceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999998887654
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-68 Score=526.70 Aligned_cols=387 Identities=36% Similarity=0.618 Sum_probs=363.5
Q ss_pred cCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhh
Q 009494 121 LEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANI 200 (533)
Q Consensus 121 ~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~ 200 (533)
..+++.|..+|.++..|.+..+.+.+..+++..||..|||+|+.+||.+..|++++++|+||||||.+|++|++.++++.
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hhcccCC---CCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc
Q 009494 201 RLHHSQN---QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK 277 (533)
Q Consensus 201 ~~~~~~~---~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~ 277 (533)
....... ...|.+||++||||||.|++.+++++.-...++.+..|||.+...+...+.++|+|+|||||+|.+++.+
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~ 219 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER 219 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc
Confidence 5432221 1359999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCCCCeeEEEEecchhhhh-cCcHHHHHHHHHhC-----CCCcEEEEeccCCHHHHHHHHhhCCC-eEEEEeCCCCCC
Q 009494 278 HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-----SLPQILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMP 350 (533)
Q Consensus 278 ~~~~l~~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-----~~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~ 350 (533)
+.+.+++++++|+||||+|+| ++|++++..|+... ..+|+++||||+|.++..++..++.+ .+.+.++.....
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~ 299 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc
Confidence 999999999999999999999 99999999999887 46799999999999999999998886 889999999999
Q ss_pred CcCceEEEEEecchhHHHHHHHHHhhccC--CC-----CCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Q 009494 351 NKAVKQLAIWVESNKKKQKLFDILMSKQH--FT-----PPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 351 ~~~v~~~~~~~~~~~k~~~l~~~l~~~~~--~~-----~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~ 423 (533)
..++.|.+.|+....|+..|++++..... .. .+++|||.+++.|+.++.+|. ..++++..+||+.++.+|.+
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~-~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS-SNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh-cCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999986542 12 389999999999999999999 89999999999999999999
Q ss_pred HHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 424 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 424 ~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
.++.|++|.+++||||++++||+|+|+|++||+||+|.+..+|+|||||+||.|+.|.++.|++..+....+.|+++|.+
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCch
Q 009494 504 SGAVR 508 (533)
Q Consensus 504 ~~~~~ 508 (533)
++|..
T Consensus 459 a~q~v 463 (482)
T KOG0335|consen 459 ANQEV 463 (482)
T ss_pred hcccC
Confidence 99975
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-68 Score=559.16 Aligned_cols=430 Identities=30% Similarity=0.539 Sum_probs=403.8
Q ss_pred CCCCCCCCCccccCccccCCcCcCCCCCCHHHHHHHHHhcC-ceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCH
Q 009494 82 PPPPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLE-INVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTP 160 (533)
Q Consensus 82 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p 160 (533)
...+..++||+++||.+..+ ++.|+..+++.++..+. |.+.|...|.|+.+|.++|+...++..++++||..|+|
T Consensus 315 ~~S~~~~epFRknfy~e~~d----i~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~ 390 (997)
T KOG0334|consen 315 DHSKISYEPFRKNFYIEVRD----IKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTP 390 (997)
T ss_pred ccccccchhhhhcccccchh----HHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcc
Confidence 34556789999999999888 99999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCe
Q 009494 161 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFK 240 (533)
Q Consensus 161 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~ 240 (533)
+|.+|||++++|+++|.+|.||||||++|+||++.|+..++... .+.||.+||++|||+|+.|+++++++|...++++
T Consensus 391 IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~--~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir 468 (997)
T KOG0334|consen 391 IQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE--EGDGPIALILAPTRELAMQIHREVRKFLKLLGIR 468 (997)
T ss_pred hhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChh--hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCce
Confidence 99999999999999999999999999999999999988876543 3669999999999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC---CCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCc
Q 009494 241 TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD---IELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 316 (533)
Q Consensus 241 ~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~---~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q 316 (533)
++++|||.....++..+++++.|+|||||++++++..+. .++.++.++|+||||+|++++|.+++..|++++ +.+|
T Consensus 469 ~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQ 548 (997)
T KOG0334|consen 469 VVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQ 548 (997)
T ss_pred EEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhh
Confidence 999999999999999999999999999999999987643 467788899999999999999999999999999 7899
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEec-chhHHHHHHHHHhhccCCCCCeEEEEcchhhHH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE-SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~ 395 (533)
++++|||+|..++.++...++.|+.+.++.....+..+.+.+..+. ...|..+|+++|..... ..++||||.+...|+
T Consensus 549 tvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 549 TVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKAD 627 (997)
T ss_pred hhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHH
Confidence 9999999999999999999999999999999999999999999988 88899999999987765 779999999999999
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccC
Q 009494 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 396 ~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR 475 (533)
.+.+.|. ..|+.+..+||+.++.+|..+++.|++|.+.+||||++++||+|++.+.+|||||+|..+.+|+||+||+||
T Consensus 628 ~l~~~L~-~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 628 ALLRDLQ-KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred HHHHHHH-hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCcCHHHHHHHHHHHHHcCCchhhHHhHHhcCc
Q 009494 476 MGDEGTAIVFVNEENKNLFQELVDILKSSGAVRLMTFCYILGRE 519 (533)
Q Consensus 476 ~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 519 (533)
.|++|.|++|+.+.+..+..+|.+.|+.++++++-.+..+.++.
T Consensus 707 agrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f 750 (997)
T KOG0334|consen 707 AGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERF 750 (997)
T ss_pred CCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 99999999999999999999999999999998765555544433
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-65 Score=539.98 Aligned_cols=362 Identities=35% Similarity=0.625 Sum_probs=335.1
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
..|+++++++.+++++.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|++.++... ......+ +|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----~~~~~~~-aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----VERKYVS-AL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc----cccCCCc-eE
Confidence 689999999999999999999999999999999999999999999999999999999999996532 0111112 99
Q ss_pred EEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
|++||||||.|+++.++.+.... ++++..++||.+...+...+..+++|||+||+||++++.++.++++++.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999988 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCC--CCcCceEEEEEecchh-HHHH
Q 009494 294 DCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM--PNKAVKQLAIWVESNK-KKQK 369 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~~~~~~-k~~~ 369 (533)
|+|+++||.+++..|+..++ ++|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+.... |...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 99999999999999999996 599999999999999999999999998888875544 7888999999999876 7777
Q ss_pred HHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 009494 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 449 (533)
Q Consensus 370 l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~ 449 (533)
|..++..... .++||||+++..++.++..|. ..|+.+..+||+++|.+|..+++.|++|+.+|||||++++||||+|
T Consensus 264 L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~-~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 264 LLKLLKDEDE--GRVIVFVRTKRLVEELAESLR-KRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHH-HCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 8777765433 369999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc-CHHHHHHHHHHHHHc
Q 009494 450 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSS 504 (533)
Q Consensus 450 ~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~ 504 (533)
++++|||||+|.+++.|+||+||+||+|..|.+++|+.+. +...+..+.+.+...
T Consensus 341 ~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred ccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999986 889999999888665
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-62 Score=511.06 Aligned_cols=367 Identities=26% Similarity=0.484 Sum_probs=330.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|++++|++.++++|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++..+...+........++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999876433222223568999
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++||++||.|+++.+..+....++++..++||.....+...+..+++|+|+||++|.+++....+.++++++||+||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 99999999999999999999988999999999999888888888889999999999999999888899999999999999
Q ss_pred hhhhcCcHHHHHHHHHhCC---CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 295 CMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
+|++++|...+..++..++ ..+.+++|||++..+..+....+.++..+.+.........+.+...+.....|...+.
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~ 247 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQ 247 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHH
Confidence 9999999999999999885 4567999999999999998888888888877666555666777777766667777777
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++..|+.+++.|. ..|+.+..+||++++.+|..+++.|++|+++|||||++++||+|+|++
T Consensus 248 ~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~-~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 248 TLIEEE--WPDRAIIFANTKHRCEEIWGHLA-ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHhc--CCCeEEEEECCHHHHHHHHHHHH-hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 776543 35689999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
++||+||+|.+...|+||+||+||.|+.|.|++|+.+.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999888888887666544
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-63 Score=453.83 Aligned_cols=374 Identities=29% Similarity=0.549 Sum_probs=346.2
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCC
Q 009494 131 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 210 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 210 (533)
..++.+|+++||.+.+++.+...||++|+.+|+.|++.++.|+|++++|..|+|||.+|.+-++..+-- ..+.
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-------~~r~ 95 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-------SVRE 95 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-------ccce
Confidence 456789999999999999999999999999999999999999999999999999999998877765422 1334
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEE
Q 009494 211 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVv 290 (533)
-.+||++||||||.|+.+.+..++..+++.+..+.||.+..+.+..+..|.+++.+|||++.++++++.+.-+.++++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchh-HHH
Q 009494 291 DEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KKQ 368 (533)
Q Consensus 291 DEah~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~-k~~ 368 (533)
||||.|++.+|..++..+++.++ ..|++++|||+|.++..+...++.+|+.+-+.....+...++|++..++.+. |.+
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHh
Confidence 99999999999999999999996 8999999999999999999999999999999999999999999999999887 777
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.|.++..... -.+.+||||++..++.|.+.++ ..++.+.++||+|+++||+.++++|++|+.+||++|++.+||+|+
T Consensus 256 tLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~-~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 256 TLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMR-EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HHHHHhhhhe--hheEEEEecccchhhHHHHHHH-hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 7877765433 3568999999999999999998 888999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCCchhhHHhH
Q 009494 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAVRLMTFCY 514 (533)
Q Consensus 449 ~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 514 (533)
|.|++|||||+|.+.+.|+||+||.||.|++|.|+-|+..+|.+.++++.+.++-.--+-++++..
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999988765554555443
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-64 Score=489.01 Aligned_cols=364 Identities=32% Similarity=0.522 Sum_probs=333.8
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|.+++|+..+++++..+||..|||+|...||..+.|+|++.+|.||||||.+|++|++.+++..+ .+-...++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrP----k~~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRP----KKVAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCc----ccCcceeE
Confidence 45899999999999999999999999999999999999999999999999999999999999998633 22455789
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-CCCCCCeeEEEEec
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVvDE 292 (533)
||++|||||+.|+++..++++....+.+.+..||.+...|-..+++.++|+|+|||||++++.+. .++++++.++|+||
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999874 68899999999999
Q ss_pred chhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecch---hHHH
Q 009494 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN---KKKQ 368 (533)
Q Consensus 293 ah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~---~k~~ 368 (533)
||+|++.+|..++..|++.. ..+|+++||||+..++.++++.-+.+|+.+.+.........+.|.++.+... .+..
T Consensus 336 ADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 99999999999999999988 6789999999999999999999999999999999888888888877765532 2344
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++.... ..+++||+.++..|..+.-.|. ..|+.+.-+||.++|.+|...++.|++++++|||||++++||+||
T Consensus 416 ~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllG-Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338|consen 416 MLASLITRTF--QDRTIVFVRTKKQAHRLRILLG-LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred HHHHHHHHhc--ccceEEEEehHHHHHHHHHHHH-HhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc
Confidence 4555555443 4679999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 449 ~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
++|.+||||++|.++..|+||+||+.|+|+.|.+++|+.+.+.+.++.+++--..+
T Consensus 493 ~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a 548 (691)
T KOG0338|consen 493 EGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKA 548 (691)
T ss_pred cceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999888875433
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.4e-61 Score=503.64 Aligned_cols=365 Identities=31% Similarity=0.592 Sum_probs=327.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+|++++|++.+.++|.+.||..|||+|.++|+.++.++|++++||||||||++|++|++..+...... ......+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-AKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-cccCCCceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999988653211 11123468999
Q ss_pred EcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh
Q 009494 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 295 (533)
|+||++||.|+.+.++.+....++++..++||.+...+...+..+++|+|+||++|++++....+.++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 99999999999999999999889999999999999888888888899999999999999998888999999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHH
Q 009494 296 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDIL 374 (533)
Q Consensus 296 ~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l 374 (533)
|++++|...+..++..+ ...|++++|||+++++..+...++.++..+.+.........+.+.+..+....+...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999888 45789999999999999999999998888777666656666777777777666655555555
Q ss_pred hhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE
Q 009494 375 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQV 454 (533)
Q Consensus 375 ~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~V 454 (533)
.. ....++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 241 ~~--~~~~~~lVF~~t~~~~~~l~~~L~-~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 241 GK--GNWQQVLVFTRTKHGANHLAEQLN-KDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred Hc--CCCCcEEEEcCcHHHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 43 234689999999999999999998 788999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 455 IIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 455 I~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
|+|++|.+..+|+||+||+||.|..|.+++|+..++...+..+.+.+...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999888877654
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-60 Score=508.60 Aligned_cols=366 Identities=31% Similarity=0.531 Sum_probs=326.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|++++|++.++++|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++............++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999998865322111223368999
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-CCCCCCeeEEEEecc
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEV 293 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVvDEa 293 (533)
||+||++|+.|+++.+++++...++++..++||.....+...+..+++|||+||++|++++.+. .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999988888888888999999999999998775 467899999999999
Q ss_pred hhhhhcCcHHHHHHHHHhCC---CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHH
Q 009494 294 DCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l 370 (533)
|+|++++|...+..++..++ ..|+++||||++..+..+...++.++..+.+.........+.+.+.......+...+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 99999999999999999886 579999999999999999888888876666655555556677777777777777777
Q ss_pred HHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 009494 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
..++.. ....++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 249 ~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~-~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 249 LGLLSR--SEGARTMVFVNTKAFVERVARTLE-RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHhc--ccCCcEEEEeCCHHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 777654 335689999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 451 v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+++||+||+|.+...|+||+||+||.|..|.|++|+.+.+...+.++.+.+..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888888888776654
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.4e-60 Score=501.01 Aligned_cols=359 Identities=31% Similarity=0.514 Sum_probs=326.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|++++|++.+.++|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++.. ...++++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------~~~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------KRFRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-------ccCCceE
Confidence 357999999999999999999999999999999999999999999999999999999999998743 1235689
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEec
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDE 292 (533)
||++||++||.|+.++++.+.... ++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++||+||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999999987654 6899999999999999888999999999999999999999888999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 293 ah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
||+|++++|...+..++..+ ...|++++|||+|+.+..+...++.++..+.+.... ....+.+.+..+....|...+.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 99999999999999999988 467999999999999999999999988888776544 3445778888888888888888
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++..++.+++.|. ..++.+..+||++++.+|+.+++.|++|+++|||||+++++|+|+|++
T Consensus 235 ~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~-~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v 311 (460)
T PRK11776 235 RLLLHH--QPESCVVFCNTKKECQEVADALN-AQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKAL 311 (460)
T ss_pred HHHHhc--CCCceEEEECCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcC
Confidence 877543 34679999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
++||+||+|.+...|+||+||+||.|..|.|++|+.+.+...+..+.+.+..
T Consensus 312 ~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 312 EAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred CeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988888877776643
No 18
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.9e-61 Score=470.68 Aligned_cols=361 Identities=27% Similarity=0.492 Sum_probs=329.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
+...|++..|++..+++++.+||..+|++|...++.++.|+|+++.|.||+|||++|++|++..+...+... ..+-.
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~---r~~~~ 156 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP---RNGTG 156 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC---CCCee
Confidence 345688899999999999999999999999999999999999999999999999999999999998765433 36677
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-CCCCCCeeEEEE
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVL 290 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVv 290 (533)
+||++||||||.|++.+++++.... ++.+..+.||........++.++++|+|+|||||++++++. .+-..+++++|+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 9999999999999999999999888 89999999999999999999999999999999999999984 455677899999
Q ss_pred ecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCC-CeEEEEeCCCC--CCCcCceEEEEEecchhH
Q 009494 291 DEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISK-DIVVVSVGKPN--MPNKAVKQLAIWVESNKK 366 (533)
Q Consensus 291 DEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~--~~~~~v~~~~~~~~~~~k 366 (533)
||||+++++||+..+..|+..+ ..+|+++||||.+.++++++...+. ++..+++.... .+...+.|.+...+...+
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 9999999999999999999999 5689999999999999999987665 48888776653 455678888888888888
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 009494 367 KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGV 446 (533)
Q Consensus 367 ~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gl 446 (533)
...++.+|.+.... .+++|||+|...+.++++.|. ...+++..+||+++|..|..+...|++.+.-|||||++++||+
T Consensus 317 f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~-~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLN-YIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred HHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHh-hcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 78888888776543 799999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHH
Q 009494 447 ELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 447 di~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 498 (533)
|+|+|++||.||+|.++++|+||+||+||.|..|.+++|+.+.+..+++.+.
T Consensus 395 D~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 395 DIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987777665
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-61 Score=451.88 Aligned_cols=362 Identities=30% Similarity=0.476 Sum_probs=330.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
...|+.+|+++++.+.|+.+|+..|||+|..+||.++.|+|+|.+|.||||||++|.+|++++|... ..+..+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-------P~giFa 78 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-------PYGIFA 78 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-------CCcceE
Confidence 4579999999999999999999999999999999999999999999999999999999999998763 457789
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC----CCCCCCeeEEE
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH----DIELDDIRMFV 289 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~----~~~l~~~~~vV 289 (533)
||++||||||.|+.++|..+++.+++++..++||...-.+...+...++++|+|||++.+++..+ ...+++++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999876 24589999999
Q ss_pred EecchhhhhcCcHHHHHHHHHhCCCC-cEEEEeccCCHHHHHHHHhhCCC--eEEEEeCCCCCCCcCceEEEEEecchhH
Q 009494 290 LDEVDCMLQRGFRDQVMQIFRAISLP-QILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQLAIWVESNKK 366 (533)
Q Consensus 290 vDEah~~~~~~~~~~~~~i~~~~~~~-q~l~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~v~~~~~~~~~~~k 366 (533)
+||||++++..|...+..+.+.++.+ |+++||||+.+.+..+...-... ..+............+.+-++.+....+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999765 99999999998887765443333 3344444555666778888999999999
Q ss_pred HHHHHHHHhhccC-CCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009494 367 KQKLFDILMSKQH-FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 445 (533)
Q Consensus 367 ~~~l~~~l~~~~~-~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~G 445 (533)
...+..+|..... .++.++||+++..+|+.|+..|. ..++.+..+||.|+|.+|...+..|+++..+|||||++++||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~-~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLK-NLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRG 317 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHh-hhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcC
Confidence 9999999988766 56789999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 446 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 446 ldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+|||.|+.|||||.|.++.+|+||+||+.|+|+.|.++.|+.+.|.+.+..+.+.+..
T Consensus 318 LDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 318 LDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred CCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999888877766554
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.3e-60 Score=505.32 Aligned_cols=359 Identities=28% Similarity=0.508 Sum_probs=327.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|.+++|++.++++|.+.||..|+|+|.++||.++.++++|++||||||||++|++|++..+.. ...++++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------~~~~~~~ 77 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------ELKAPQI 77 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-------ccCCCeE
Confidence 346999999999999999999999999999999999999999999999999999999999987643 1346789
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEec
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDE 292 (533)
||++||++||.|+++.++.+.... ++.++.++||.+...+...+..+++|||+||++|.+++.+..+.++++++|||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 999999999999999999887665 6899999999998888888888999999999999999999889999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 293 ah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
||+|++++|...+..++..+ ...|+++||||+|..+..+...++.++..+.+.........+.+.+..+....|...|.
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHH
Confidence 99999999999999999988 46899999999999999999999999888877766666677778877777777878888
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++..++.++..|. ..++.+..+||++++.+|+.+++.|++|+++|||||+++++|||+|++
T Consensus 238 ~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~-~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V 314 (629)
T PRK11634 238 RFLEAE--DFDAAIIFVRTKNATLEVAEALE-RNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERI 314 (629)
T ss_pred HHHHhc--CCCCEEEEeccHHHHHHHHHHHH-hCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccC
Confidence 887543 34689999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 502 (533)
++||+||+|.+.+.|+||+||+||.|+.|.|++|+.+.+...++.+.+.++
T Consensus 315 ~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 315 SLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred CEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999988877777766544
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-60 Score=459.37 Aligned_cols=354 Identities=30% Similarity=0.493 Sum_probs=316.9
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 136 SFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 136 ~f~~~~--l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+|++++ |.+++++.+...||..+||+|..+||.++.++|+++.|+||||||++|++|++..+.......+ ...--+
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~--~~~vga 82 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP--PGQVGA 82 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC--ccceeE
Confidence 566654 5599999999999999999999999999999999999999999999999999998855332211 112358
Q ss_pred EEEcccHHHHHHHHHHHHHHcCC-CCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcCC--CCCCCeeEEE
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKG-LPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHD--IELDDIRMFV 289 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~--~~l~~~~~vV 289 (533)
|||+||||||.|+.+.+..|... .++...++.||.+..+.+..+.. +++|+|||||||.+++.+.. +++.++.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999988776 57899999999999988887764 58899999999999999854 4566999999
Q ss_pred EecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCC--CCcCceEEEEEecchhH
Q 009494 290 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM--PNKAVKQLAIWVESNKK 366 (533)
Q Consensus 290 vDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~~~~~~k 366 (533)
+||||+++++||..++..|++.+ ..+++=+||||...++.++.+..+.+++.+++..... ++..+...+..+....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 99999999999999999999999 4678899999999999999999999999999988765 66678888889999999
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009494 367 KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 445 (533)
Q Consensus 367 ~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~-~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~G 445 (533)
...++++|.. ...+++|||.+|-..++..+..|... .+..+..+||.|.+..|..++..|++..-.||+||++++||
T Consensus 243 ~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 9999999987 44578999999999999999999754 46789999999999999999999999888899999999999
Q ss_pred CCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHH
Q 009494 446 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 493 (533)
Q Consensus 446 ldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~ 493 (533)
||||++++||.||+|.+++.|+||+||++|.|+.|.|++|+.+++..+
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 999999999999999999999999999999999999999999966443
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.9e-59 Score=488.14 Aligned_cols=362 Identities=31% Similarity=0.513 Sum_probs=323.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+|+++++++.+++.|.+.||..|+++|.++++.++.|+|++++||||+|||++|++|++.++..... .....+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR---RKSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCceEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875322 1234578999
Q ss_pred EcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh
Q 009494 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 295 (533)
++||++|+.|+++.+..+....++++..++||.....+...+..+++|+|+||++|.+++..+.+.+.++++||+||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999999999999999889999999999998888877888899999999999999999988999999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCcEEEEeccCCH-HHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecch-hHHHHHHH
Q 009494 296 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQ-EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-KKKQKLFD 372 (533)
Q Consensus 296 ~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~-~k~~~l~~ 372 (533)
|++++|...+..+...+ ...|+++||||++. .+..+...++.++..+...........+.+.+...+.. .+...+..
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999998877 45789999999985 57888888888888887766655566677776666643 44445555
Q ss_pred HHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc
Q 009494 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 452 (533)
Q Consensus 373 ~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~ 452 (533)
++.. ....++||||+++.+++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 239 l~~~--~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 239 LLKQ--PEVTRSIVFVRTRERVHELAGWLR-KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHhc--CCCCeEEEEeCChHHHHHHHHHHH-hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 5532 235689999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 453 ~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+||+||+|.+...|+||+||+||.|..|.+++|++..|...+..+.+++..
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888888877754
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-58 Score=484.46 Aligned_cols=369 Identities=29% Similarity=0.511 Sum_probs=327.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
....|.+++|++.+.++|.+.||..|||+|.++|+.++.|+|+++++|||||||++|++|++..+.............++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 44578899999999999999999999999999999999999999999999999999999999998764321111123578
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHH-cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEe
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvD 291 (533)
+|||+||++|+.|+++.++.+.+..++++..++||.....+...+. ..++|+|+||++|.+++.+....++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888999999999988877777765 458999999999999998888889999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhCC---CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHH
Q 009494 292 EVDCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~ 368 (533)
|+|++++++|...+..++..++ .+|++++|||++..+..++..+..++..+.+.........+.+.+..+....+..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 9999999999999999998874 5799999999999999999999888888777666666666777777777777777
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++... ...++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLV-KDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 777776543 34689999999999999999998 778999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 449 ~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
|++++||+|++|.|...|+||+||+||.|..|.+++|+.++|..++..+.+.+...
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998888778877766544
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-59 Score=462.16 Aligned_cols=380 Identities=28% Similarity=0.487 Sum_probs=339.7
Q ss_pred HHHHHHHHHhcC-ceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 111 IGQTDSLRKRLE-INVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 111 ~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
++.++.+..++. +. ...+..|++++++....+.|+.++|..||.+|+++||..+.|+|+|..|.||||||++|
T Consensus 50 ee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAF 123 (758)
T KOG0343|consen 50 EEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAF 123 (758)
T ss_pred HHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeee
Confidence 444555555443 22 34566899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHH
Q 009494 190 LVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPG 269 (533)
Q Consensus 190 llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~ 269 (533)
++|++.++...+|.. ..|--+|||+||||||.|+++.+.++++...+...++.||........++.+ .+|+|||||
T Consensus 124 lvPvlE~L~r~kWs~---~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPG 199 (758)
T KOG0343|consen 124 LVPVLEALYRLKWSP---TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPG 199 (758)
T ss_pred hHHHHHHHHHcCCCC---CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechH
Confidence 999999998877754 4567799999999999999999999999999999999999998887777654 899999999
Q ss_pred HHHHHHHcC-CCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC
Q 009494 270 RLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP 347 (533)
Q Consensus 270 ~l~~~l~~~-~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 347 (533)
||+.++..+ .++-.++.++|+||||+|++|||...+..|++.+ +.+|+++||||....+.++++.-+.+|.++.+...
T Consensus 200 RLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~ 279 (758)
T KOG0343|consen 200 RLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHEN 279 (758)
T ss_pred HHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecc
Confidence 999999875 5678999999999999999999999999999999 56899999999999999999999999998888743
Q ss_pred --CCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHh-hcCCeEEEEeCCCCHHHHHHH
Q 009494 348 --NMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV-TTGMKALSIHGEKPMKERREI 424 (533)
Q Consensus 348 --~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~-~~~~~~~~~h~~~~~~er~~~ 424 (533)
...+..+.|.++.++...|...|..++..+. ..++|||++|.+++.++++.+++ ..|++...+||.|+|..|..+
T Consensus 280 a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev 357 (758)
T KOG0343|consen 280 AVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEV 357 (758)
T ss_pred ccccChhhhhheEEEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHH
Confidence 5677889999999999999999999997754 56899999999999999999974 458999999999999999999
Q ss_pred HHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 425 MRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 425 ~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
...|...+.-||+||++++||+|+|.|++||.+|.|.+++.|+||+||+.|.+..|.+++++.+.+.+. ++..|++.
T Consensus 358 ~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~---~l~~Lq~k 434 (758)
T KOG0343|consen 358 YKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA---MLKKLQKK 434 (758)
T ss_pred HHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH---HHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999988543 33444444
Q ss_pred C
Q 009494 505 G 505 (533)
Q Consensus 505 ~ 505 (533)
+
T Consensus 435 ~ 435 (758)
T KOG0343|consen 435 K 435 (758)
T ss_pred C
Confidence 3
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-61 Score=443.60 Aligned_cols=358 Identities=30% Similarity=0.514 Sum_probs=332.6
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
..|+++.|..+++..+.+.||++|+|+|.++||.++.|+|+++.|..|+|||.+|.+|++..+-. ....-.++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-------~~~~IQ~~ 157 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-------KKNVIQAI 157 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-------cccceeEE
Confidence 47999999999999999999999999999999999999999999999999999999999987643 24456799
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++||||||-|....++++++.+++++....||++..+.+-++....+++|+||||++++..++...+++..++|+||||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred hhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHH
Q 009494 295 CMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDI 373 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~ 373 (533)
.+++..|.+.+..++..+ +.+|++++|||+|-.+..+..+++.+|..|+.-+ ..+...+.|++.++.+..|..-|..+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHH
Confidence 999999999999999999 5789999999999999999999999999888654 45667789999999999988777766
Q ss_pred HhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 009494 374 LMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQ 453 (533)
Q Consensus 374 l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~ 453 (533)
..+.+ -...+|||||...++.+|+.+. ..|+.+.++|+.|.|+.|..++.+|++|.++.||||+.+.||+|++.+++
T Consensus 317 fskLq--INQsIIFCNS~~rVELLAkKIT-elGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNv 393 (459)
T KOG0326|consen 317 FSKLQ--INQSIIFCNSTNRVELLAKKIT-ELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNV 393 (459)
T ss_pred HHHhc--ccceEEEeccchHhHHHHHHHH-hccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeE
Confidence 65543 3568999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 454 VIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 454 VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
|||||+|.+.+.|.||+||+||.|..|.|+.+++.+|...+.++.+.|-.
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcc
Confidence 99999999999999999999999999999999999998877777665543
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-59 Score=459.82 Aligned_cols=362 Identities=29% Similarity=0.504 Sum_probs=316.8
Q ss_pred cCcccCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 135 LSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..|..+||++.+.+.|.. +++..||.+|+++||.++.|+|++|.++||||||++|++|++.++..+..... ...|+.+
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-Rs~G~~A 214 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-RSDGPYA 214 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-ccCCceE
Confidence 468899999999999976 59999999999999999999999999999999999999999999988765543 5789999
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCC-CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc-CCCCCCCeeEEEEe
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVLD 291 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~-~~~~l~~~~~vVvD 291 (533)
|||+||||||.|+++.+.++.+.+- +-...+.||.....+..++++|++|+|+|||||++++.+ ..+.++++.+||+|
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 9999999999999999999987654 344678999999999999999999999999999999987 45788999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhCC--------------CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC----------
Q 009494 292 EVDCMLQRGFRDQVMQIFRAIS--------------LPQILMYSATISQEVEKMSSSISKDIVVVSVGKP---------- 347 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~~--------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------- 347 (533)
|+|++++.||+..+..|+..+. ..|.+++|||+...+.+++..-+++|+.|..+..
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999999998771 2578999999999999999999999998882211
Q ss_pred ---------------CCCCcCceEEEEEecchhHHHHHHHHHhhccCC--CCCeEEEEcchhhHHHHHHHHHhhc-----
Q 009494 348 ---------------NMPNKAVKQLAIWVESNKKKQKLFDILMSKQHF--TPPAVVYVGSRLGADLLSNAISVTT----- 405 (533)
Q Consensus 348 ---------------~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~LVf~~s~~~a~~l~~~L~~~~----- 405 (533)
...+..+.|.+..++...+.-.|..+|.+.... ..++|||+.+.+.+++-+..|....
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 122334556777778777777777777765432 3478999999999999998886321
Q ss_pred ----------------CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHh
Q 009494 406 ----------------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQ 469 (533)
Q Consensus 406 ----------------~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr 469 (533)
+.++.-+||+|.|++|..+++.|...+-.||+||++++||+|+|.|++||.||+|.+.++|+||
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 3457789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCccEEEEEecCcCHHHHHHH
Q 009494 470 IGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 470 iGR~gR~g~~g~~~~~~~~~~~~~~~~l 497 (533)
+||+.|+|.+|.+++|+.+.+.++...+
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHH
Confidence 9999999999999999999998754443
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-56 Score=463.53 Aligned_cols=363 Identities=30% Similarity=0.557 Sum_probs=320.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|+++++++.+.++|.+.||..|+|+|.++|+.++.++|++++||||||||++|++|++..+.. ...++++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-------~~~~~~~ 99 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-------DLNACQA 99 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------CCCCceE
Confidence 568999999999999999999999999999999999999999999999999999999999987632 1346789
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
||++||++|+.|+.+.++.++...+.....+.||.....+...+..+++|+|+||++|.+++.+....++++++||+||+
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 99999999999999999999888888888899999888888888888999999999999999988888999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecch-hHHHHHH
Q 009494 294 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-KKKQKLF 371 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~-~k~~~l~ 371 (533)
|++.+.+|...+..++..+ +..|++++|||+|+....+...++.++..+.+.........+.+.+..+... .+...+.
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 9999999998898988887 5689999999999999988888888877766655554555566666665543 2444455
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++.+++.+++.|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 260 ~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~-~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 260 DLYETL--TITQAIIYCNTRRKVDYLTKKMH-ERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHhc--CCCeEEEEecCcHHHHHHHHHHH-HCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 554432 24679999999999999999998 778999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCC
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 506 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 506 (533)
++||++|+|.+...|+||+||+||.|..|.|++|+++++...+..+.+.+...-.
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~ 391 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIE 391 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCccc
Confidence 9999999999999999999999999999999999999999888888776665443
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-57 Score=435.69 Aligned_cols=367 Identities=25% Similarity=0.434 Sum_probs=328.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|++++|++.+++++.+.||.+||-+|..+||.++.|+|+++.|.||||||.+|++|+++.++...... ....++.++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeE
Confidence 5899999999999999999999999999999999999999999999999999999999999998865543 557889999
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCC--CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC-CCCCCeeEEEEe
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLP--FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-IELDDIRMFVLD 291 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~-~~l~~~~~vVvD 291 (533)
|++||+|||+|++..+.++...++ ++++.+....+.......+...++|+|+||++++.++..+. ..+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999998876654 67777776666666667777889999999999999999876 678899999999
Q ss_pred cchhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCC-CcCceEEEEEecchhHHHH
Q 009494 292 EVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP-NKAVKQLAIWVESNKKKQK 369 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~-~~~v~~~~~~~~~~~k~~~ 369 (533)
|||.++..||+..+..+..+++ ..|.++||||+..++..+.+.++.+|+++...+...+ ...+.|+...+.+..|...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 9999999999999999999995 5699999999999999999999999999888777655 4567888888887777666
Q ss_pred HHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc--------
Q 009494 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-------- 441 (533)
Q Consensus 370 l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-------- 441 (533)
++.++. ...-.+++|||+|+...+..|.-.|. ..|++..+++|.++.+.|..++++|+.|-.+++|||+.
T Consensus 258 lyallK-L~LI~gKsliFVNtIdr~YrLkLfLe-qFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 258 LYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLE-QFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHH-HHHhcCceEEEEechhhhHHHHHHHH-HhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 665553 33446799999999999999999998 89999999999999999999999999999999999991
Q ss_pred ---------------------------ccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHH
Q 009494 442 ---------------------------LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF 494 (533)
Q Consensus 442 ---------------------------~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~ 494 (533)
.+||||+.+|..|+|||+|.+...|+||+||++|.+++|.+++|+.+.+..-.
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhh
Confidence 34999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHc
Q 009494 495 QELVDILKSS 504 (533)
Q Consensus 495 ~~l~~~l~~~ 504 (533)
..+...++..
T Consensus 416 ~~le~~~~d~ 425 (569)
T KOG0346|consen 416 ESLESILKDE 425 (569)
T ss_pred hHHHHHHhhH
Confidence 7777777775
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-58 Score=450.78 Aligned_cols=375 Identities=24% Similarity=0.439 Sum_probs=315.1
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHhhhhh------
Q 009494 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRL------ 202 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~------ 202 (533)
.+..++.|.++++|.+++.+|..+||..||++|...+|++..| .|++..|.||||||++|.+|++..+.....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456778999999999999999999999999999999999998 799999999999999999999996554221
Q ss_pred cccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC--
Q 009494 203 HHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-- 280 (533)
Q Consensus 203 ~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~-- 280 (533)
........+.+||++||||||.|+..-+..+....++++..++||.....|.+-+.+.++|||||||||+.++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112223445699999999999999999999999999999999999999999898999999999999999999987654
Q ss_pred -CCCCeeEEEEecchhhhhcCcHHHHHHHHHhC------CCCcEEEEeccCCH---------------------HHHHHH
Q 009494 281 -ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATISQ---------------------EVEKMS 332 (533)
Q Consensus 281 -~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~------~~~q~l~~SAT~~~---------------------~~~~l~ 332 (533)
+++++.++|+||+|||++.|....+..++..+ ..+|++.||||+.- .++.+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 57889999999999999999888999998888 46799999999742 123333
Q ss_pred Hh--hCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEE
Q 009494 333 SS--ISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL 410 (533)
Q Consensus 333 ~~--~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~ 410 (533)
+. +..+|.++...........+....+.+....|...|.-+|. ...+++|||||++..+..|+-+|. ..+++..
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~-~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLN-NLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe---ecCCceEEEechHHHHHHHHHHHh-hcCCCCc
Confidence 32 23455555554444333333333333333333333333332 235799999999999999999998 8999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 411 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 411 ~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
.+|+.|.|.+|...++.|++....|||||++++||+|||+|.|||||..|.+.+.|+||.||+.|++..|..+.|+.+.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCch
Q 009494 491 KNLFQELVDILKSSGAVR 508 (533)
Q Consensus 491 ~~~~~~l~~~l~~~~~~~ 508 (533)
...+.+|.+.|+...-.+
T Consensus 572 ~~~~~KL~ktL~k~~dlp 589 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKEDLP 589 (731)
T ss_pred hHHHHHHHHHHhhccCCC
Confidence 999999999999876643
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-55 Score=435.24 Aligned_cols=392 Identities=31% Similarity=0.535 Sum_probs=344.4
Q ss_pred HHHHHHhcCceeecCCCCCcccCccc----CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 114 TDSLRKRLEINVKGDAVPAPILSFSS----CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 114 ~~~~~~~~~i~~~~~~~p~~~~~f~~----~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
....|+.+.+.+.|..+|.|+.+|.+ ......+++++...||..|+|+|++++|.++.+++++.+||||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 34557778899999999999999997 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc--CCCCCeEEEEEcCcch-HHHHHHHHcCCceeec
Q 009494 190 LVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG--KGLPFKTALVVGGDAM-ARQVYRIQQGVELIVG 266 (533)
Q Consensus 190 llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~--~~~~~~~~~~~gg~~~-~~~~~~l~~~~~Iii~ 266 (533)
.+|++.++..... .....|-+++|+.|||+||.|++.++.++. .+.+++.......... ..........+++++.
T Consensus 191 ~~Pil~~L~~~~~--~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 191 NLPILQHLKDLSQ--EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred hhHHHHHHHHhhc--ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 9999999876432 234567899999999999999999999998 6666665554443211 1111222344899999
Q ss_pred CHHHHHHHHHcCC--CCCCCeeEEEEecchhhhhc-CcHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHHhhCCCeEE
Q 009494 267 TPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVV 341 (533)
Q Consensus 267 Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~ 341 (533)
||-++...+.... +.+..+.++|+||+|++++. .|..|+..|++.+ +...+-+||||++..+++++.....+++.
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence 9999999888765 67899999999999999999 8999999999988 55667799999999999999999999999
Q ss_pred EEeCCCCCCCcCceEEEEEecch-hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHH
Q 009494 342 VSVGKPNMPNKAVKQLAIWVESN-KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKE 420 (533)
Q Consensus 342 i~~~~~~~~~~~v~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~e 420 (533)
+.++..+.....+.|...++... .|...+.+++... ..+|+|||+.+.+.|..|...|....++.+.++||+.++.+
T Consensus 349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQ 426 (593)
T ss_pred EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhH
Confidence 99999988888888887777654 5666667777553 67899999999999999999994377899999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHH
Q 009494 421 RREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 500 (533)
Q Consensus 421 r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 500 (533)
|.++++.|+.|++.|||||++++||+|+.++++|||||+|.+...|+||+||+||+|+.|+|++|++..+..+.+.+...
T Consensus 427 rde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred HHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCchh
Q 009494 501 LKSSGAVRL 509 (533)
Q Consensus 501 l~~~~~~~~ 509 (533)
++.+|.+.+
T Consensus 507 ~~~sG~evp 515 (593)
T KOG0344|consen 507 MEQSGCEVP 515 (593)
T ss_pred HHHcCCcch
Confidence 999999753
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-54 Score=410.55 Aligned_cols=363 Identities=28% Similarity=0.473 Sum_probs=339.1
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
--+|.++||+..+.+++.+.||..|||+|+..+|.++.+++++..|-||||||.+|++|++.++.... ..+-++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s------~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------QTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc------ccccce
Confidence 34799999999999999999999999999999999999999999999999999999999999987532 467889
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
+++.|||+|+.|..+..+.++++.+++.++++||+...+|...+..+++||++||+++.++.-.-.+.++.+.|||+||+
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999998888777788999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHH
Q 009494 294 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~ 372 (533)
|+++.+||.+++..++.++ ...|+++||||+|+.+..+++..+.+|..+...-.......+...+..+....|...|+.
T Consensus 174 drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHH
Confidence 9999999999999999999 467999999999999999999999999998877777777778888888888899999998
Q ss_pred HHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc
Q 009494 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 452 (533)
Q Consensus 373 ~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~ 452 (533)
++..... ..+++|||.++.+++.+...|+ ..|+.+..++|.+++.-|..-+.+|+.++..+||.|++++||+|+|-.+
T Consensus 254 il~~~~~-~~~t~vf~~tk~hve~~~~ll~-~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplld 331 (529)
T KOG0337|consen 254 ILGGRIK-DKQTIVFVATKHHVEYVRGLLR-DFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLD 331 (529)
T ss_pred HHhcccc-ccceeEEecccchHHHHHHHHH-hcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccc
Confidence 8877654 5689999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 453 ~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
.|||||+|.+...|+||+||+.|+|+.|.+|.|+.+++..++-+|--+|-..
T Consensus 332 nvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 332 NVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred ccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 9999999999999999999999999999999999999999998888777663
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.7e-52 Score=451.91 Aligned_cols=344 Identities=22% Similarity=0.332 Sum_probs=271.6
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 141 SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 141 ~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.+++.+.+.|++.||.+|||+|.++++.++.|+|+++++|||||||++|++|++..+.. +.+.++|||+|||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~--------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD--------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------CCCcEEEEEcChH
Confidence 48999999999999999999999999999999999999999999999999999998865 3467899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc-C---CCCCCCeeEEEEecchhh
Q 009494 221 ELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-H---DIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 221 ~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~-~---~~~l~~~~~vVvDEah~~ 296 (533)
+|+.|+...++.+. ..++++..+.|+.+ ..+...+..+++|+|+||++|...+.. + ...++++++||+||||+|
T Consensus 92 aLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 92 ALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 99999999999987 34677766666555 555566777899999999998643322 1 123789999999999999
Q ss_pred hhcCcHHHHHHHHHhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc-----
Q 009494 297 LQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES----- 363 (533)
Q Consensus 297 ~~~~~~~~~~~i~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~----- 363 (533)
.+ .|+..+..+++++ ..+|++++|||+++..+ ++..+...+..+ +.....+.. ......+...
T Consensus 170 ~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~-~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 170 RG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRG-ARTVALWEPPLTELT 245 (742)
T ss_pred cC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcC-ceEEEEecCCccccc
Confidence 76 4777776666554 45899999999998765 566666655443 222222222 1223332221
Q ss_pred ------------hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhh-------cCCeEEEEeCCCCHHHHHHH
Q 009494 364 ------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT-------TGMKALSIHGEKPMKERREI 424 (533)
Q Consensus 364 ------------~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~-------~~~~~~~~h~~~~~~er~~~ 424 (533)
..+...+..++ ..+.++||||+|+..|+.++..|... .+..+..+||++++++|+.+
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred cccccccccchHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 11222333333 23578999999999999999998742 14577899999999999999
Q ss_pred HHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc--CHHHHHHHHHHHH
Q 009494 425 MRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILK 502 (533)
Q Consensus 425 ~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~ 502 (533)
++.|++|++++||||+++++|||++++++||+|++|.+...|+||+|||||.|+.|.++++...+ |..++....+.++
T Consensus 322 e~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 322 ERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999998743 4444444444444
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-53 Score=400.41 Aligned_cols=356 Identities=33% Similarity=0.592 Sum_probs=330.4
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|++++|+++|++.+...||++|+.+|+.||..+..|.|+++.+++|+|||.+|+++++.++-. ......+|
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-------~~ke~qal 98 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-------SVKETQAL 98 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-------chHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999987622 13345699
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
+++|+|+||.|+....+.++...+..+..+.||.+...+...+.. +++|+++||+++.+++....+....++++|+||+
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 999999999999999999999999999999999998866555554 5899999999999999999888899999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHH
Q 009494 294 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~ 372 (533)
|.|+..||..++..|++++ +..|++++|||.|.++....+.++.+|+.+.+.....+...++|++..+....|..-|.+
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHH
Confidence 9999999999999999999 567999999999999999999999999999999999889999999999999888888888
Q ss_pred HHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc
Q 009494 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 452 (533)
Q Consensus 373 ~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~ 452 (533)
+.. .....+||||+++.++.+...|. ..+..+..+||+|.+.+|..+++.|+.|..+|||+|+.++||+|+..+.
T Consensus 259 l~~----~~~q~~if~nt~r~v~~l~~~L~-~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 259 LYR----RVTQAVIFCNTRRKVDNLTDKLR-AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHH----hhhcceEEecchhhHHHHHHHHh-hCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 876 34568999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009494 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 453 ~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 502 (533)
.||||+.|.....|+||+||+||.|.+|.++.|+.+.+...++++.+++.
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~ 383 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN 383 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcC
Confidence 99999999999999999999999999999999999999888888775543
No 34
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-52 Score=402.52 Aligned_cols=351 Identities=26% Similarity=0.441 Sum_probs=292.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE
Q 009494 145 KLLQNIEAAGYDMPTPVQMQAIPSAL---------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~p~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
.+.+++.++++.+..|+|..++|+++ ..+|+.|.||||||||++|.+|+++.+.... -..-++||
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~------v~~LRavV 220 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP------VKRLRAVV 220 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC------ccceEEEE
Confidence 34455889999999999999999986 2689999999999999999999998875422 33467999
Q ss_pred EcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcC-----CceeecCHHHHHHHHHc-CCCCCCCeeEEE
Q 009494 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-----VELIVGTPGRLIDLLMK-HDIELDDIRMFV 289 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Iii~Tp~~l~~~l~~-~~~~l~~~~~vV 289 (533)
|+||++|+.|+++.|.++..+.++.+..+.|..+...+...+.+. .+|+|+|||||++++.. ..++|++++|+|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 999999999999999999999999999999998888888887654 38999999999999985 678999999999
Q ss_pred EecchhhhhcCcHHHHHHHHHhCC-----------------------------------CCcEEEEeccCCHHHHHHHHh
Q 009494 290 LDEVDCMLQRGFRDQVMQIFRAIS-----------------------------------LPQILMYSATISQEVEKMSSS 334 (533)
Q Consensus 290 vDEah~~~~~~~~~~~~~i~~~~~-----------------------------------~~q~l~~SAT~~~~~~~l~~~ 334 (533)
|||||||++..|...+-.++..+. ....+.+|||+...-..+...
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999998877666655554431 123678888887766777776
Q ss_pred hCCCeEEEEeC----CCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHh---hcCC
Q 009494 335 ISKDIVVVSVG----KPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV---TTGM 407 (533)
Q Consensus 335 ~~~~~~~i~~~----~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~---~~~~ 407 (533)
-+..|....+. .....+..+.+.....+...+...+..++.... ..++|+|+++...+..++..|.- ..+.
T Consensus 381 ~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k--~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 381 TLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK--LNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh--cceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 66666443333 223344555566666666666667777776543 46899999999999999998872 2345
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 408 KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 408 ~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
.+-.+.|++++..|...++.|+.|+++||||+++++||+|+.+++.|||||+|.+...|+||+||++|+|+.|.|+++.+
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHH
Q 009494 488 EENKNLFQELVDILKS 503 (533)
Q Consensus 488 ~~~~~~~~~l~~~l~~ 503 (533)
..+...|.++++....
T Consensus 539 ~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNL 554 (620)
T ss_pred cccchHHHHHHHHhcc
Confidence 9999999998887776
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-51 Score=384.90 Aligned_cols=362 Identities=27% Similarity=0.508 Sum_probs=313.9
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccC
Q 009494 129 AVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 206 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 206 (533)
.+--...+|++++|.+++++.+..++|.+|+.+|..++|.++.. +++|.++..|+|||.+|.|.++.++--
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------- 156 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------- 156 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------
Confidence 33346689999999999999999999999999999999999965 789999999999999999999987632
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc-CCCCCCCe
Q 009494 207 NQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDI 285 (533)
Q Consensus 207 ~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~-~~~~l~~~ 285 (533)
....|.++.|+|||+||.|+-+.+.+.++..+++......|.....- ..+ ..+|+|+||+.+.+++.+ ..+.+..+
T Consensus 157 ~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 157 DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhc
Confidence 24578899999999999999999999999888887777766521110 001 157999999999999988 77889999
Q ss_pred eEEEEecchhhhhc-CcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc
Q 009494 286 RMFVLDEVDCMLQR-GFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES 363 (533)
Q Consensus 286 ~~vVvDEah~~~~~-~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~ 363 (533)
+.+|+||||.|++. ||+++-.+|...++ ..|+++||||+...+..++..+.+++..+.+........++.|++..+..
T Consensus 234 kvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~ 313 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC 313 (477)
T ss_pred eEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc
Confidence 99999999999874 69999999999887 88999999999999999999999999999999999999999999888876
Q ss_pred h-hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 364 N-KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 364 ~-~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
. .|.+.|.++... ..-+..+|||.++..|..++..+. ..|+.+..+||+|.-.+|..+++.|+.|..+|||+|+++
T Consensus 314 ~~~K~~~l~~lyg~--~tigqsiIFc~tk~ta~~l~~~m~-~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 314 RDDKYQALVNLYGL--LTIGQSIIFCHTKATAMWLYEEMR-AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred hhhHHHHHHHHHhh--hhhhheEEEEeehhhHHHHHHHHH-hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 5 455666664322 234689999999999999999999 899999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCC------CHhHHHHhhccccCCCCccEEEEEecCc-CHHHHHHHHHHHHH
Q 009494 443 GRGVELLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKS 503 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d~p~------s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~ 503 (533)
+||+|++.|++|||||+|. +++.|+||+||+||.|++|.++-|++.. ..+.+..+.+....
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 9999999999999999995 7899999999999999999999999765 45555565555543
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8e-50 Score=432.44 Aligned_cols=338 Identities=22% Similarity=0.324 Sum_probs=261.9
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 136 SFSS--CSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 136 ~f~~--~~l~~~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.|.. ++....+...++. +||..|+|+|.++|++++.|+|+++++|||+|||++|++|++.. ++.
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------------~Gi 502 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------------PGI 502 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------------CCc
Confidence 3553 4555667666665 59999999999999999999999999999999999999999852 346
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHH------cCCceeecCHHHHHH--HHHcC--CC-C
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ------QGVELIVGTPGRLID--LLMKH--DI-E 281 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Iii~Tp~~l~~--~l~~~--~~-~ 281 (533)
+|||+|+++|+.++...+.. .++....+.++....++...+. .+++|+++||++|.. .+.+. .+ .
T Consensus 503 TLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 99999999998854444333 3688889999888776655443 358999999999852 22211 11 2
Q ss_pred CCCeeEEEEecchhhhhcC--cHHHHHH---HHHhCCCCcEEEEeccCCHHHHHHHHhhC--CCeEEEEeCCCCCCCcCc
Q 009494 282 LDDIRMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSIS--KDIVVVSVGKPNMPNKAV 354 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~--~~~~~~~---i~~~~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~v 354 (533)
...+.+|||||||++++|| |++.+.. +...++..+++++|||.+..+.......+ .++.++.. ....+++
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL 655 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNL 655 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccce
Confidence 3458999999999999998 8887775 34556888999999999988776444333 23332221 1122233
Q ss_pred eEEEEEecchh-HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 009494 355 KQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 355 ~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~ 433 (533)
. +..+.... ....+..++... ..+.++||||.++..++.++..|. ..|+.+..+||+|++.+|..+++.|..|++
T Consensus 656 ~--y~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~-~~Gika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 656 W--YSVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQ-EFGHKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred E--EEEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHH-HCCCCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 2 22222222 234555555432 235679999999999999999998 889999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHH
Q 009494 434 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 434 ~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l 497 (533)
+|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|++..|......+
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987665444443
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.4e-50 Score=401.16 Aligned_cols=360 Identities=25% Similarity=0.449 Sum_probs=320.2
Q ss_pred cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccC
Q 009494 127 GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 206 (533)
Q Consensus 127 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 206 (533)
++..+.....|+++-|...++..|+..+|..||++|..|||.++.+-|+||+|..|+|||++|.+.++..+--
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------- 89 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------- 89 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-------
Confidence 4455667778999999999999999999999999999999999999999999999999999998888776532
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 207 NQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 207 ~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+...+.++|++||||+|.|+.+.+.+++..+ ++++....||+.......++++ ++|+|+||||+..+...+.++.+.+
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccce
Confidence 3567889999999999999999999998754 7999999999999888777765 7899999999999999999999999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc
Q 009494 286 RMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES 363 (533)
Q Consensus 286 ~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~ 363 (533)
+++|+||||.+.+ ..|..++..|+..+ ..+|++.+|||-|..+..+...++.+|..+.........-.++|++..+..
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s 248 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCS 248 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccC
Confidence 9999999999998 56999999999999 568999999999999999999999999999888877777778888876654
Q ss_pred h--------hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcE
Q 009494 364 N--------KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 364 ~--------~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~V 435 (533)
. .|.+.|-+++.+... ...||||+....|+.++.+|+ ..|+++..+.|.|+|.+|..+++.++.-.++|
T Consensus 249 ~nnsveemrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~-ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rI 325 (980)
T KOG4284|consen 249 PNNSVEEMRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLK-SSGLDVTFISGAMSQKDRLLAVDQLRAFRVRI 325 (980)
T ss_pred CcchHHHHHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhh-ccCCCeEEeccccchhHHHHHHHHhhhceEEE
Confidence 4 244555555544332 468999999999999999999 89999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH-HHHHHH
Q 009494 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK-NLFQEL 497 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~-~~~~~l 497 (533)
||+|+..+||||-+++++|||.|.|.+...|.||||||||.|..|.+++|+..... .-|..+
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999975533 444444
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.9e-49 Score=410.86 Aligned_cols=324 Identities=21% Similarity=0.324 Sum_probs=252.5
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.+||..|+|+|.++++.++.|+|+++++|||||||++|++|++.. ++.+||++|+++|+.|+...++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------------~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------------DGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------------CCcEEEEecHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998742 3469999999999998888776
Q ss_pred HHcCCCCCeEEEEEcCcchHHHH---HHHH-cCCceeecCHHHHHHHH-HcCCC-CCCCeeEEEEecchhhhhcC--cHH
Q 009494 232 LLGKGLPFKTALVVGGDAMARQV---YRIQ-QGVELIVGTPGRLIDLL-MKHDI-ELDDIRMFVLDEVDCMLQRG--FRD 303 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~Iii~Tp~~l~~~l-~~~~~-~l~~~~~vVvDEah~~~~~~--~~~ 303 (533)
.+ ++....+.++....++. ..+. ..++|+++||+++.... ....+ ...++++|||||||++++|| |++
T Consensus 73 ~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 73 AS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 54 56677777766544322 2222 34899999999975322 11112 46789999999999999887 666
Q ss_pred HHHH---HHHhCCCCcEEEEeccCCHHHHHHHHhh--CCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhcc
Q 009494 304 QVMQ---IFRAISLPQILMYSATISQEVEKMSSSI--SKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQ 378 (533)
Q Consensus 304 ~~~~---i~~~~~~~q~l~~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~ 378 (533)
.+.. +...++..+++++|||+++.+....... +.++..+.... ..+++...+.. ........+..++...
T Consensus 149 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~~~v~~-~~~~~~~~l~~~l~~~- 223 (470)
T TIGR00614 149 DYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLYYEVRR-KTPKILEDLLRFIRKE- 223 (470)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcEEEEEe-CCccHHHHHHHHHHHh-
Confidence 6655 4556688999999999998876544333 23343332211 12222222111 1113445566666532
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcC
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD 458 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d 458 (533)
..+..+||||++++.++.++..|. ..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~-~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQ-NLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHH-hcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeC
Confidence 234567999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHH
Q 009494 459 MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 459 ~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 498 (533)
+|.|.+.|+||+|||||.|..|.|++|+++.|...++.++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 9999999999999999999999999999988766555443
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-48 Score=425.70 Aligned_cols=333 Identities=23% Similarity=0.282 Sum_probs=265.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.|++++||+.+.+.+.+.||.+|+|+|.++++. +..|+|++++||||||||++|++|++.++.. +.++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~----------~~kal 71 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----------GGKAL 71 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----------CCcEE
Confidence 578899999999999999999999999999998 6789999999999999999999999988742 56799
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++|+++||.|+++.++++.. .++++..++|+..... .....++|+|+||+++..++++....+.++++||+||+|
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 999999999999999998754 4788888888765433 223458999999999999888766668899999999999
Q ss_pred hhhhcCcHHHHHHHHHhC----CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEE------------
Q 009494 295 CMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA------------ 358 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~------------ 358 (533)
.+.+.+++..++.++.++ +..|++++|||+++ ...++.|+....+... ..+ -.+...+
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~----~rp-v~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSE----WRP-IDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCC----CCC-CCCeeeEecCCeecccccc
Confidence 999888888888887765 67899999999987 4566666643321100 000 0000000
Q ss_pred EEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc---------------------------------
Q 009494 359 IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--------------------------------- 405 (533)
Q Consensus 359 ~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~--------------------------------- 405 (533)
..+....+ ......+......++++||||+++..|+.++..|....
T Consensus 222 ~~~~~~~~-~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 300 (737)
T PRK02362 222 REVEVPSK-DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLAD 300 (737)
T ss_pred ccCCCccc-hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHH
Confidence 00111111 22233333323356799999999999999988886321
Q ss_pred --CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cC-----CCCCHhHHHHhhcccc
Q 009494 406 --GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-----MPNSIKEYVHQIGRAS 474 (533)
Q Consensus 406 --~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d-----~p~s~~~y~qriGR~g 474 (533)
...+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|.||+||||
T Consensus 301 ~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAG 380 (737)
T PRK02362 301 CVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAG 380 (737)
T ss_pred HHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCC
Confidence 135788999999999999999999999999999999999999999999997 66 5889999999999999
Q ss_pred CCCCc--cEEEEEecCc
Q 009494 475 QMGDE--GTAIVFVNEE 489 (533)
Q Consensus 475 R~g~~--g~~~~~~~~~ 489 (533)
|.|.. |.+++++...
T Consensus 381 R~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 381 RPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCCCceEEEEecCc
Confidence 99875 9999999765
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=9.7e-47 Score=405.82 Aligned_cols=332 Identities=21% Similarity=0.312 Sum_probs=258.8
Q ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 141 SLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 141 ~l~~~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++....+.|+. +||..|+|+|.++++.++.|+++++++|||+|||++|++|++.. ...+||++|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------------~g~tlVisPl 74 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------------DGLTLVVSPL 74 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------------CCCEEEEecH
Confidence 344444555555 59999999999999999999999999999999999999998852 2459999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH---HHH-cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh
Q 009494 220 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 295 (533)
++|+.|+...++.+ ++....+.++........ .+. ...+++++||+++........+...++++|||||||+
T Consensus 75 ~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 75 ISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccc
Confidence 99999988887764 566677767665544332 223 3478999999998642222233455789999999999
Q ss_pred hhhcC--cHHHHHH---HHHhCCCCcEEEEeccCCHHHHHH-HHhh-CCCeEEEEeCCCCCCCcCceEEEEEecchhHHH
Q 009494 296 MLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKM-SSSI-SKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 296 ~~~~~--~~~~~~~---i~~~~~~~q~l~~SAT~~~~~~~l-~~~~-~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~ 368 (533)
+.+|| |++.+.. +...++..+++++|||+++..... ...+ +.++..... .. ..+++ .+..+....+..
T Consensus 151 i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~-~~--~r~nl--~~~v~~~~~~~~ 225 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SF--DRPNI--RYTLVEKFKPLD 225 (607)
T ss_pred cccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC-CC--CCCcc--eeeeeeccchHH
Confidence 99887 6665544 455668899999999999876543 3332 334443321 11 11222 222233334455
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++.. ..+.++||||+++.+++.++..|. ..|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|+|+
T Consensus 226 ~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~-~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 226 QLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQ-SRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHH-hCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 66666644 345789999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHH
Q 009494 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 449 ~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l 497 (533)
|++++||+||+|.|.+.|+||+|||||.|..|.|++|+++.|...++.+
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998886655444
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-46 Score=414.01 Aligned_cols=339 Identities=22% Similarity=0.279 Sum_probs=265.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.|+++++++.+.+.+++.||..|+|+|.++++. ++.|+|++++||||||||++|.+|++.++.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------cCCeEE
Confidence 577889999999999999999999999999986 7899999999999999999999999988753 256899
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++|+++|+.|+++.++.+. ..++++..+.|+...... ....++|+|+||+++..++.++...++++++||+||+|
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred EEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 99999999999999998864 457888888888765432 23568999999999998888776678999999999999
Q ss_pred hhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCc-C-ceEEEEEecchh--H-HH
Q 009494 295 CMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNK-A-VKQLAIWVESNK--K-KQ 368 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~-~-v~~~~~~~~~~~--k-~~ 368 (533)
.+.+.+++..+..++.++ ...|++++|||+++ ...++.++....+. ....+ .+.. . ..+......... + ..
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~-~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVV-SDWRP-VKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCcccc-CCCCC-CcceeeEecCCeeeccCcchhcchH
Confidence 999888999999999887 56899999999987 57777776543311 11111 1100 0 001111111110 0 11
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhh--------------------------------cCCeEEEEeCCC
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT--------------------------------TGMKALSIHGEK 416 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~--------------------------------~~~~~~~~h~~~ 416 (533)
.+...+.+....++++||||+++..|+.++..|... ....+..+||++
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 122222222234678999999999998887666421 123588999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE-------cCCCC-CHhHHHHhhccccCCC--CccEEEEEe
Q 009494 417 PMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-------FDMPN-SIKEYVHQIGRASQMG--DEGTAIVFV 486 (533)
Q Consensus 417 ~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-------~d~p~-s~~~y~qriGR~gR~g--~~g~~~~~~ 486 (533)
++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 44443 5789999999999976 569999999
Q ss_pred cCcC
Q 009494 487 NEEN 490 (533)
Q Consensus 487 ~~~~ 490 (533)
..++
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 8755
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.3e-46 Score=402.89 Aligned_cols=322 Identities=25% Similarity=0.362 Sum_probs=256.6
Q ss_pred HHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 149 NIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 149 ~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
.|++ +||.+|+|+|.++++.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-------------CCcEEEEcCCHHHHHHHH
Confidence 3444 69999999999999999999999999999999999999998742 245899999999999988
Q ss_pred HHHHHHcCCCCCeEEEEEcCcchHHHHH---HHH-cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC--c
Q 009494 228 EQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--F 301 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~--~ 301 (533)
..++.+ ++.+..+.++.+..+... .+. ...+|+++||+++........+...++++|||||||++.+|| |
T Consensus 71 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 71 DQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc
Confidence 887764 567777777766554332 222 458999999999965444444556789999999999999876 7
Q ss_pred HHHHHHH---HHhCCCCcEEEEeccCCHHHHHHHHhhCC--CeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhh
Q 009494 302 RDQVMQI---FRAISLPQILMYSATISQEVEKMSSSISK--DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS 376 (533)
Q Consensus 302 ~~~~~~i---~~~~~~~q~l~~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~ 376 (533)
++.+..+ ...++..+++++|||.+..+.......+. ++..+. .. ...+++ .+.......+...+.+++..
T Consensus 147 rp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl--~~~v~~~~~~~~~l~~~l~~ 221 (591)
T TIGR01389 147 RPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNL--RFSVVKKNNKQKFLLDYLKK 221 (591)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCc--EEEEEeCCCHHHHHHHHHHh
Confidence 7766655 44556777999999999887654444332 332221 11 111222 22333344566677777765
Q ss_pred ccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE
Q 009494 377 KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII 456 (533)
Q Consensus 377 ~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~ 456 (533)
.. +.++||||+++..++.+++.|. ..|+.+..+||+|+..+|..+++.|.+|+++|||||+++++|+|+|++++||+
T Consensus 222 ~~--~~~~IIf~~sr~~~e~la~~L~-~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~ 298 (591)
T TIGR01389 222 HR--GQSGIIYASSRKKVEELAERLE-SQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH 298 (591)
T ss_pred cC--CCCEEEEECcHHHHHHHHHHHH-hCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE
Confidence 43 5789999999999999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHH
Q 009494 457 FDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQ 495 (533)
Q Consensus 457 ~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~ 495 (533)
|++|.|.+.|.|++|||||.|..|.|++|+++.|...++
T Consensus 299 ~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 299 YDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred cCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHH
Confidence 999999999999999999999999999999877654433
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.5e-45 Score=409.83 Aligned_cols=342 Identities=18% Similarity=0.257 Sum_probs=254.0
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
+++.+.+.++. +|..|||+|.++++.+++|+|++++||||||||++|++|++.++...... .....+.++||++|+++
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-GELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-cCCCCCeEEEEEcCHHH
Confidence 56666666555 79999999999999999999999999999999999999999988753211 11134678999999999
Q ss_pred HHHHHHHHHHH-------Hc----CCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC--CCCCeeE
Q 009494 222 LCIQVEEQAKL-------LG----KGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI--ELDDIRM 287 (533)
Q Consensus 222 L~~Q~~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~--~l~~~~~ 287 (533)
|+.|+++.+.. +. ... ++++...+|+.+.......+.+.++|+|+||++|..++....+ .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99998875442 22 233 5788888888887777666777899999999999877765433 4789999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHhC-----CCCcEEEEeccCCHHHHHHHHhhCCC-------eEEEEeCCCCCCCcCce
Q 009494 288 FVLDEVDCMLQRGFRDQVMQIFRAI-----SLPQILMYSATISQEVEKMSSSISKD-------IVVVSVGKPNMPNKAVK 355 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~~~~i~~~~-----~~~q~l~~SAT~~~~~~~l~~~~~~~-------~~~i~~~~~~~~~~~v~ 355 (533)
||+||+|.+.+..++..+...+.++ ...|++++|||+++ ...++.++... +..+. .........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEE-ccCCCccceEE
Confidence 9999999999877666655554443 46899999999987 34455444321 11111 11100000000
Q ss_pred EE-----EEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc-----CCeEEEEeCCCCHHHHHHHH
Q 009494 356 QL-----AIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----GMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 356 ~~-----~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~-----~~~~~~~h~~~~~~er~~~~ 425 (533)
.. ............+...+.......+++||||+++..|+.++..|.+.. +..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 000111122233444444433446789999999999999999998432 46789999999999999999
Q ss_pred HHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCC-CccEEEEEec
Q 009494 426 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG-DEGTAIVFVN 487 (533)
Q Consensus 426 ~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g-~~g~~~~~~~ 487 (533)
+.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999874 3344444443
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-44 Score=396.75 Aligned_cols=340 Identities=19% Similarity=0.230 Sum_probs=262.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
.|+++++++.+++.+.+.||. ++|+|.++++.+.++++++++||||||||+++.++++..+.. +.++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----------~~k~v~ 70 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----------GLKSIY 70 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----------CCcEEE
Confidence 577889999999999999997 999999999999999999999999999999999999887643 457999
Q ss_pred EcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh
Q 009494 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 295 (533)
++|+++||.|+++.++++. ..+.++....|+...... ....++|+|+||+++..++.+....+.++++||+||+|+
T Consensus 71 i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 9999999999999998864 457888888887654332 234689999999999988887766689999999999999
Q ss_pred hhhcCcHHHHHHHHHhC----CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEE-----Eecch-h
Q 009494 296 MLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI-----WVESN-K 365 (533)
Q Consensus 296 ~~~~~~~~~~~~i~~~~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~-----~~~~~-~ 365 (533)
+.+.+++..++.++..+ +..|++++|||+++ ..+++.++....+.. ...+..+..... ..+.. .
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~-----~~r~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKS-----NFRPVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCC-----CCCCCCeEEEEEecCeeeeccccc
Confidence 99888888888776654 56899999999987 566777765433211 111111111111 11111 1
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc------------------------CCeEEEEeCCCCHHHH
Q 009494 366 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT------------------------GMKALSIHGEKPMKER 421 (533)
Q Consensus 366 k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~------------------------~~~~~~~h~~~~~~er 421 (533)
....+..++......++++||||+++..++.++..|.... ...+..+||++++++|
T Consensus 221 ~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR 300 (674)
T PRK01172 221 SQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQR 300 (674)
T ss_pred ccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHH
Confidence 1112344444434456799999999999999998886321 1246789999999999
Q ss_pred HHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC---------CCCHhHHHHhhccccCCCC--ccEEEEEecCcC
Q 009494 422 REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM---------PNSIKEYVHQIGRASQMGD--EGTAIVFVNEEN 490 (533)
Q Consensus 422 ~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~---------p~s~~~y~qriGR~gR~g~--~g~~~~~~~~~~ 490 (533)
..+++.|++|.++|||||+++++|+|+|... ||+.+. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 301 ~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 301 RFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999999864 555443 4588999999999999985 578888876543
Q ss_pred -HHHHHHH
Q 009494 491 -KNLFQEL 497 (533)
Q Consensus 491 -~~~~~~l 497 (533)
...++++
T Consensus 380 ~~~~~~~~ 387 (674)
T PRK01172 380 SYDAAKKY 387 (674)
T ss_pred cHHHHHHH
Confidence 3444443
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.1e-43 Score=390.71 Aligned_cols=382 Identities=18% Similarity=0.225 Sum_probs=281.9
Q ss_pred ccccCCcCcCCCCCCHHHHHHHHHhcCceeecCC-----C--CCcccCcccCCCCHHHHHHHHH-cCCCCCCHHHHHHHH
Q 009494 96 YVRESDENSGFQSLTIGQTDSLRKRLEINVKGDA-----V--PAPILSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIP 167 (533)
Q Consensus 96 y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~--p~~~~~f~~~~l~~~l~~~l~~-~g~~~p~p~Q~~~i~ 167 (533)
|.......+.+.+|....|.+.+++..-.+..-. . -+....=..+..+..+...+.. .|| .|||.|.++|+
T Consensus 383 y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~ 461 (926)
T TIGR00580 383 YVGGSGKNPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPPDLEWQQEFEDSFPF-EETPDQLKAIE 461 (926)
T ss_pred ecCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHH
Confidence 4444445677899999999998887643322100 0 0000000113345566666655 588 59999999999
Q ss_pred HHhCC------CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeE
Q 009494 168 SALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 168 ~~~~~------~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
.++.+ +|.+++|+||||||.+|++|++..+.. +++++|++||++||.|+++.+++++..+++++
T Consensus 462 ~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v 531 (926)
T TIGR00580 462 EIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----------GKQVAVLVPTTLLAQQHFETFKERFANFPVTI 531 (926)
T ss_pred HHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEE
Confidence 99974 689999999999999999999887643 57899999999999999999999888888999
Q ss_pred EEEEcCcchHHH---HHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCc
Q 009494 242 ALVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 316 (533)
Q Consensus 242 ~~~~gg~~~~~~---~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q 316 (533)
..+.|+.+..++ ...+.. +++|||+||..+ ...+.++++++|||||+|++. ......+..+ ...+
T Consensus 532 ~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~~~~~ 601 (926)
T TIGR00580 532 ELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG-----VKQKEKLKELRTSVD 601 (926)
T ss_pred EEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc-----hhHHHHHHhcCCCCC
Confidence 888887764433 334444 489999999432 345678999999999999853 2233444444 5789
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~ 396 (533)
+++||||+.+....+......++..+...... ...+...+..... ..+...+......+++++|||+++.+++.
T Consensus 602 vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~----~~i~~~i~~el~~g~qv~if~n~i~~~e~ 675 (926)
T TIGR00580 602 VLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP----ELVREAIRRELLRGGQVFYVHNRIESIEK 675 (926)
T ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH----HHHHHHHHHHHHcCCeEEEEECCcHHHHH
Confidence 99999998776666665556666665543322 1223333332221 12222222222346789999999999999
Q ss_pred HHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC-CHhHHHHhhcccc
Q 009494 397 LSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRAS 474 (533)
Q Consensus 397 l~~~L~~~-~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~-s~~~y~qriGR~g 474 (533)
+++.|.+. .+.++..+||+|++.+|+.++++|++|+++|||||+++++|+|+|++++||+++.|. +..+|.||+||+|
T Consensus 676 l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvG 755 (926)
T TIGR00580 676 LATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 755 (926)
T ss_pred HHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCC
Confidence 99999843 368899999999999999999999999999999999999999999999999999875 6789999999999
Q ss_pred CCCCccEEEEEecCcC--HHHHHHHHHHHHHc
Q 009494 475 QMGDEGTAIVFVNEEN--KNLFQELVDILKSS 504 (533)
Q Consensus 475 R~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 504 (533)
|.|+.|.|++++++.+ .+...+-++.+++.
T Consensus 756 R~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 756 RSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9999999999997643 23444444555443
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.8e-44 Score=381.60 Aligned_cols=314 Identities=21% Similarity=0.243 Sum_probs=245.5
Q ss_pred cCCCCCCHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE-EcccHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV-LTPTRELCIQVEEQA 230 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li-l~Ptr~L~~Q~~~~~ 230 (533)
.||+ |||||.++++.++.|+ ++++.+|||||||.+|.++++... .....++.|| ++|||+|+.|+++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~--------~~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE--------IGAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc--------ccccccceEEEeCchHHHHHHHHHHH
Confidence 4898 9999999999999998 577789999999997665544221 1133455555 779999999999999
Q ss_pred HHHcCCC-----------------------CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC-------
Q 009494 231 KLLGKGL-----------------------PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI------- 280 (533)
Q Consensus 231 ~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~------- 280 (533)
+++++.+ ++++..++||.+...++..+..+++|||+|++ ++.++.+
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~ 158 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCG 158 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccc
Confidence 9988754 48899999999999999999999999999954 4444443
Q ss_pred ---------CCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--CC----CcEEEEeccCCHHHHHHHHhhCCCeEEEEeC
Q 009494 281 ---------ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SL----PQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 281 ---------~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~~----~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 345 (533)
.+.+++++|+|||| ++++|...+..|++.+ +. .|+++||||++.++..+...++.++..+.+.
T Consensus 159 ~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~ 236 (844)
T TIGR02621 159 FKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVL 236 (844)
T ss_pred cccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecc
Confidence 26889999999999 6789999999999964 22 5999999999998888887777666666555
Q ss_pred CCCCCCcCceEEEEEecchhHHHHHHHHHhh-ccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--
Q 009494 346 KPNMPNKAVKQLAIWVESNKKKQKLFDILMS-KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERR-- 422 (533)
Q Consensus 346 ~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~-- 422 (533)
........+.++ ..+....+...++..+.. ....++++|||||++..|+.+++.|. ..++ ..+||+|++.+|.
T Consensus 237 ~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~-~~g~--~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 237 KKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP-KEKF--ELLTGTLRGAERDDL 312 (844)
T ss_pred cccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH-hcCC--eEeeCCCCHHHHhhH
Confidence 444444455553 233333343333333222 12345789999999999999999998 5555 8999999999999
Q ss_pred ---HHHHHHhc----CC-------CcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCc-cEEEEEec
Q 009494 423 ---EIMRSFLV----GE-------VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GTAIVFVN 487 (533)
Q Consensus 423 ---~~~~~f~~----g~-------~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~-g~~~~~~~ 487 (533)
.+++.|++ |. ..|||||+++++|+||+. ++||++..| .+.|+||+||+||.|.. +.++++++
T Consensus 313 ~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 313 VKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 88999987 44 689999999999999986 899998877 79999999999999985 44466654
Q ss_pred C
Q 009494 488 E 488 (533)
Q Consensus 488 ~ 488 (533)
.
T Consensus 390 ~ 390 (844)
T TIGR02621 390 L 390 (844)
T ss_pred e
Confidence 3
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.7e-42 Score=387.58 Aligned_cols=381 Identities=18% Similarity=0.205 Sum_probs=279.6
Q ss_pred ccccCCcCcCCCCCCHHHHHHHHHhcCceeecCC-----C--CCcccCcccCCCCHHHHHH-HHHcCCCCCCHHHHHHHH
Q 009494 96 YVRESDENSGFQSLTIGQTDSLRKRLEINVKGDA-----V--PAPILSFSSCSLSQKLLQN-IEAAGYDMPTPVQMQAIP 167 (533)
Q Consensus 96 y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~--p~~~~~f~~~~l~~~l~~~-l~~~g~~~p~p~Q~~~i~ 167 (533)
|.......+.+.++....|.+.+++..-.+..-. . -+....=..+..+..+... ...++| .||+.|.++|+
T Consensus 532 y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~ 610 (1147)
T PRK10689 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAIN 610 (1147)
T ss_pred ecCCCCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHH
Confidence 5444445677899999999998877654332110 0 0000000112233444444 456688 79999999999
Q ss_pred HHhCC------CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeE
Q 009494 168 SALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 168 ~~~~~------~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
.++.+ +|++++|+||+|||.+|+.+++..+. .+++++|++||++||.|+++.+++.+...++++
T Consensus 611 ~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i 680 (1147)
T PRK10689 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 (1147)
T ss_pred HHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceE
Confidence 99976 89999999999999999888776542 367899999999999999999998777778888
Q ss_pred EEEEcCcchHHHHHHHH----cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCc
Q 009494 242 ALVVGGDAMARQVYRIQ----QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 316 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l~----~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q 316 (533)
..+.|+.+..++...+. .+++|+|+||+.+ ...+.++++++|||||+|++ ++. . ...+..+ ...|
T Consensus 681 ~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf---G~~-~-~e~lk~l~~~~q 750 (1147)
T PRK10689 681 EMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF---GVR-H-KERIKAMRADVD 750 (1147)
T ss_pred EEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc---chh-H-HHHHHhcCCCCc
Confidence 88998888776654433 3589999999743 23456789999999999997 332 2 2334444 6789
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~ 396 (533)
+++||||+.+....+....+.++..+...... ...+.+..........+..++..+ ..+++++|||+++..++.
T Consensus 751 vLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQK 824 (1147)
T ss_pred EEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHH
Confidence 99999998887777777777788777653322 223444443333222222222222 235789999999999999
Q ss_pred HHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC-CCHhHHHHhhcccc
Q 009494 397 LSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRAS 474 (533)
Q Consensus 397 l~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p-~s~~~y~qriGR~g 474 (533)
+++.|.+.. +.++..+||+|++.+|..++.+|++|+++|||||+++++|+|+|++++||+.+.. .+...|.||+||+|
T Consensus 825 la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvG 904 (1147)
T PRK10689 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 (1147)
T ss_pred HHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccC
Confidence 999998432 6789999999999999999999999999999999999999999999999965443 35668999999999
Q ss_pred CCCCccEEEEEecCcC--HHHHHHHHHHHHH
Q 009494 475 QMGDEGTAIVFVNEEN--KNLFQELVDILKS 503 (533)
Q Consensus 475 R~g~~g~~~~~~~~~~--~~~~~~l~~~l~~ 503 (533)
|.|..|.|++++.+.. .+...+-++.+++
T Consensus 905 R~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~ 935 (1147)
T PRK10689 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 (1147)
T ss_pred CCCCceEEEEEeCCCcccCHHHHHHHHHHHH
Confidence 9999999999986542 2333444444444
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.1e-43 Score=372.23 Aligned_cols=339 Identities=21% Similarity=0.291 Sum_probs=271.4
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
|++.+.+.++.. |..|||.|.+|||.+.+|+|+|++||||||||+++++|++..+.... ......+-.+|||+|.|+
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG--KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--CCCCCCceEEEEeCcHHH
Confidence 788888999888 99999999999999999999999999999999999999999998753 112245678999999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC--CCCCCeeEEEEecchhhhhc
Q 009494 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~~~~~ 299 (533)
|.+.+...++..+..+|+.+...+|.++..+.....++-++|+|+|||.|.-++.... -.+.++.+|||||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 9999999999999999999988888888887766777779999999999988776643 35899999999999999877
Q ss_pred CcHHHHHHHHHhC----CCCcEEEEeccCCHHHHHHHHhhCCCe---EEEEeCCCCCCCcCceEEEEEecc-----hhHH
Q 009494 300 GFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDI---VVVSVGKPNMPNKAVKQLAIWVES-----NKKK 367 (533)
Q Consensus 300 ~~~~~~~~i~~~~----~~~q~l~~SAT~~~~~~~l~~~~~~~~---~~i~~~~~~~~~~~v~~~~~~~~~-----~~k~ 367 (533)
..+.++.--++++ .+.|.|++|||..+ .+..++++...- .++.+... ....+ .+..... ..-.
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~--k~~~i--~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA--KKLEI--KVISPVEDLIYDEELW 239 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC--CcceE--EEEecCCccccccchh
Confidence 6666666555555 57899999999985 556666665542 22222211 11111 1111111 1112
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+...+.........+|||+||+..|+.++..|.+..+.++..+||.++.+.|..+.+.|++|+.+.+|||+.++-|||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 23333333333334579999999999999999999666689999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhccccCC-CCccEEEEEecC
Q 009494 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQM-GDEGTAIVFVNE 488 (533)
Q Consensus 448 i~~v~~VI~~d~p~s~~~y~qriGR~gR~-g~~g~~~~~~~~ 488 (533)
+.+++.||++..|.++..++||+||+|+. |....++++...
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999954 555666666654
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.1e-42 Score=371.45 Aligned_cols=336 Identities=18% Similarity=0.272 Sum_probs=253.5
Q ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE
Q 009494 144 QKLLQNI-EAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 144 ~~l~~~l-~~~g~~~p~p~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
..+.+.+ ...+| +||++|.++++.+..+ .+.+++||||||||++|++|++..+. .+.+++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------~g~q~lil 316 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------AGYQAALM 316 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEE
Confidence 4455555 44578 6999999999999876 47999999999999999999988763 36789999
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH---HHHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEec
Q 009494 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDE 292 (533)
+||++||.|+++.++++...+++++..++|+.+..+ ....+..+ ++|+|+||+.+.+ .+.+.++++||+||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 999999999999999999888999999999988543 33445554 9999999987732 34678999999999
Q ss_pred chhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHH
Q 009494 293 VDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 293 ah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~ 372 (533)
+|++... +...+...-..+++++||||+.+....+......+...+... ......+...+. . ..+...+++
T Consensus 392 ~Hrfg~~----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~--p~~r~~i~~~~~--~-~~~~~~~~~ 462 (681)
T PRK10917 392 QHRFGVE----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL--PPGRKPITTVVI--P-DSRRDEVYE 462 (681)
T ss_pred hhhhhHH----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC--CCCCCCcEEEEe--C-cccHHHHHH
Confidence 9997432 222333333468999999998765544443333333333221 111223333322 2 223345555
Q ss_pred HHhhccCCCCCeEEEEcch--------hhHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009494 373 ILMSKQHFTPPAVVYVGSR--------LGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 373 ~l~~~~~~~~~~LVf~~s~--------~~a~~l~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
.+......+.+++|||+.. ..+..+++.|.+.. ++++..+||+|++.+|+.+++.|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 6555555677999999954 34566777776433 47899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCC-CHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 444 RGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 444 ~Gldi~~v~~VI~~d~p~-s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
+|+|+|++++||+++.|. ....|.||+||+||.|..|.|+++++....+...+-++.+.++
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~ 604 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRET 604 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHh
Confidence 999999999999999987 5788999999999999999999999644333444555566553
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.8e-42 Score=368.58 Aligned_cols=334 Identities=17% Similarity=0.235 Sum_probs=249.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 145 KLLQNIEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~p~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.+.+.++..+| +||+.|.++++.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------~g~qvlilaP 292 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------AGYQVALMAP 292 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------cCCcEEEECC
Confidence 34455677799 7999999999999865 25899999999999999999988753 3678999999
Q ss_pred cHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH---HHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 219 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 219 tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++||.|+++.+++++..+++++..++|+....+ ....+.. .++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechh
Confidence 9999999999999999888999999999987655 3334443 48999999987743 3567899999999999
Q ss_pred hhhhcCcHHHHHHHHHhCC---CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 295 CMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
++... +...+..... .+++++||||+.+....+......+...+. ........+...+ +.. .....++
T Consensus 368 ~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~~r~~i~~~~--~~~-~~~~~~~ 438 (630)
T TIGR00643 368 RFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPPGRKPITTVL--IKH-DEKDIVY 438 (630)
T ss_pred hccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCCCCCceEEEE--eCc-chHHHHH
Confidence 86432 2223333333 689999999976644333222111222221 1111112232222 222 2235566
Q ss_pred HHHhhccCCCCCeEEEEcch--------hhHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 372 DILMSKQHFTPPAVVYVGSR--------LGADLLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~--------~~a~~l~~~L~~~-~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
..+......+.+++|||+.. ..++.+++.|... .++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 66665555677899999876 4566777777633 36789999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCC-CHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 443 GRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d~p~-s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
++|+|+|++++||+++.|. +...|.||+||+||.|..|.|++++.....+...+-++.+..
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~ 580 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMAD 580 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHh
Confidence 9999999999999999986 678899999999999999999999943333334444455554
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-42 Score=354.51 Aligned_cols=330 Identities=24% Similarity=0.360 Sum_probs=257.2
Q ss_pred HHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 148 QNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 148 ~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..|+. +||..++|-|.++|..+++|+++++..|||+||+++|.+|++-. ...+|||+|..+|....
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CCCEEEECchHHHHHHH
Confidence 44554 49999999999999999999999999999999999999999753 23699999999998877
Q ss_pred HHHHHHHcCCCCCeEEEEEcCcchHHHHH---HHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC--
Q 009494 227 EEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-- 300 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-- 300 (533)
.+.++.. |+....+.+..+..+... .+..+ .++++-+|++|..-...+.+.-..+.++||||||++++||
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCc
Confidence 7766654 567777777655544332 33333 8999999999855443333445678899999999999998
Q ss_pred cHHHHHHHHH---hCCCCcEEEEeccCCHHHHHHHHhhCC-CeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhh
Q 009494 301 FRDQVMQIFR---AISLPQILMYSATISQEVEKMSSSISK-DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS 376 (533)
Q Consensus 301 ~~~~~~~i~~---~~~~~q~l~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~ 376 (533)
|++.|.++-. .+++++++++|||-++.+...+...+. ..-.+...... .+++...+.... .-...+. ++..
T Consensus 150 FRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd--RpNi~~~v~~~~--~~~~q~~-fi~~ 224 (590)
T COG0514 150 FRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD--RPNLALKVVEKG--EPSDQLA-FLAT 224 (590)
T ss_pred cCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC--Cchhhhhhhhcc--cHHHHHH-HHHh
Confidence 9988887754 457899999999999888765544332 22111111111 122221111111 1122222 3332
Q ss_pred -ccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE
Q 009494 377 -KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 377 -~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
......+.||||.|++.++.+++.|. ..|+.+..||+||+..+|+.+.+.|..++++|+|||.++++|||-|++++||
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~-~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLR-KNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHH-HCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 33445678999999999999999999 6799999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHH
Q 009494 456 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 500 (533)
Q Consensus 456 ~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 500 (533)
|||+|.|++.|.|-+|||||.|....|++|+++.|......+.+.
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999987766665554
No 52
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-44 Score=321.29 Aligned_cols=328 Identities=30% Similarity=0.538 Sum_probs=280.7
Q ss_pred cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccC
Q 009494 127 GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 206 (533)
Q Consensus 127 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 206 (533)
|..+....+.|.++-|.++++.++-..||++|+.+|.++||...-|-+++++|..|.|||.+|.+..++++--
T Consensus 34 gsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------- 106 (387)
T KOG0329|consen 34 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------- 106 (387)
T ss_pred CcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-------
Confidence 3333334456888899999999999999999999999999999999999999999999999999998887532
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCCCC-CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 207 NQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 207 ~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
......+|++|+|||||-|+.++..+|++.++ .++...+||.+.......+++-++|+|+|||+++.+.+.+.++++++
T Consensus 107 v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 107 VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhc
Confidence 23356799999999999999999999998875 89999999999998888888889999999999999999999999999
Q ss_pred eEEEEecchhhhhc-CcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC-CCCCcCceEEEEEec
Q 009494 286 RMFVLDEVDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP-NMPNKAVKQLAIWVE 362 (533)
Q Consensus 286 ~~vVvDEah~~~~~-~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~-~~~~~~v~~~~~~~~ 362 (533)
+.+|+||||.|++. ..+..+..|++.. ...|+.+||||++++++...+.++.+|..+.+... ......+.|++....
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk 266 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK 266 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh
Confidence 99999999998854 4677888888776 46789999999999999999999999998888765 455667888888888
Q ss_pred chhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 363 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 363 ~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
+..|..++.++|.... -..++||+.|... |. | ..+ +|||+++
T Consensus 267 e~eKNrkl~dLLd~Le--FNQVvIFvKsv~R-------l~-------------------------f---~kr-~vat~lf 308 (387)
T KOG0329|consen 267 ENEKNRKLNDLLDVLE--FNQVVIFVKSVQR-------LS-------------------------F---QKR-LVATDLF 308 (387)
T ss_pred hhhhhhhhhhhhhhhh--hcceeEeeehhhh-------hh-------------------------h---hhh-hHHhhhh
Confidence 8888888888886543 3579999988654 10 2 123 8899999
Q ss_pred cccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc-CHHHHHHHHH
Q 009494 443 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVD 499 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~ 499 (533)
+||+|+-.++.|+|||+|.+.+.|.||+|||||.|.+|.+++|++.. +...+..+.+
T Consensus 309 grgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 309 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred ccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 99999999999999999999999999999999999999999999754 4444444433
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.9e-41 Score=378.28 Aligned_cols=306 Identities=19% Similarity=0.258 Sum_probs=223.8
Q ss_pred EEccCCCchhHHHHHHHHHHHhhhhhcc---cCCCCCceEEEEcccHHHHHHHHHHHHHHc------------CCCCCeE
Q 009494 177 VSANTGSGKTASFLVPVISQCANIRLHH---SQNQKNPLAMVLTPTRELCIQVEEQAKLLG------------KGLPFKT 241 (533)
Q Consensus 177 v~a~TGsGKT~~~llp~l~~l~~~~~~~---~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~------------~~~~~~~ 241 (533)
|+||||||||++|++|++..+....... .....+.++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532110 011346889999999999999999886421 1246888
Q ss_pred EEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-CCCCCCeeEEEEecchhhhhcCcHHHHHHHH----HhC-CCC
Q 009494 242 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIF----RAI-SLP 315 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~----~~~-~~~ 315 (533)
...+|+.+..++...+++.++|||+||++|..++.++ ...++++++|||||+|.+.+..++..+...+ ..+ .+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899988888876666778999999999998887654 3468999999999999998765554444444 333 468
Q ss_pred cEEEEeccCCHHHHHHHHhhCCC-eEEEEeCCCCCCCcCceEEEEEecchh--------------------HHHHHHHHH
Q 009494 316 QILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIWVESNK--------------------KKQKLFDIL 374 (533)
Q Consensus 316 q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~--------------------k~~~l~~~l 374 (533)
|+|++|||+++ .+.+++++... ++.+.. ........+. +........ ....+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999998 56777766543 444322 2222222222 111111100 001111112
Q ss_pred hhccCCCCCeEEEEcchhhHHHHHHHHHhhcC--------------------------------CeEEEEeCCCCHHHHH
Q 009494 375 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTG--------------------------------MKALSIHGEKPMKERR 422 (533)
Q Consensus 375 ~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~--------------------------------~~~~~~h~~~~~~er~ 422 (533)
........++||||||+..|+.++..|.+... ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 22222357899999999999999999974211 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCC-CCccEEEEE
Q 009494 423 EIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM-GDEGTAIVF 485 (533)
Q Consensus 423 ~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~-g~~g~~~~~ 485 (533)
.+++.|++|++++||||+++++|||++++++||+++.|.++.+|+||+||+||. |..+.++++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999999999999999999996 233455533
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.5e-39 Score=366.15 Aligned_cols=300 Identities=22% Similarity=0.297 Sum_probs=239.9
Q ss_pred HHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 149 NIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 149 ~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
.+++ .|+ .|+|+|.++++.++.|+|++++||||||||. |.+++...+. ..++++|||+||++|+.|++
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~---------~~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA---------KKGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------hcCCeEEEEeccHHHHHHHH
Confidence 3434 377 8999999999999999999999999999996 5566554432 23688999999999999999
Q ss_pred HHHHHHcCCCCCeEEEEEcCcch-----HHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh---
Q 009494 228 EQAKLLGKGLPFKTALVVGGDAM-----ARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ--- 298 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~--- 298 (533)
+.++.++...++.+..++|+... .++...+.. +++|+|+||++|.+.+. .+...+++++|+||||+|++
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhccc
Confidence 99999998888888888777542 333344454 58999999999998776 45567799999999999996
Q ss_pred --------cCcH-HHHHHHHHhCC-------------------------CCcEEEEeccCCHH-HHHHHHhhCCCeEEEE
Q 009494 299 --------RGFR-DQVMQIFRAIS-------------------------LPQILMYSATISQE-VEKMSSSISKDIVVVS 343 (533)
Q Consensus 299 --------~~~~-~~~~~i~~~~~-------------------------~~q~l~~SAT~~~~-~~~l~~~~~~~~~~i~ 343 (533)
.||. ..+..++..++ ..|++++|||+++. +.. .++.++..+.
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~ 295 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFE 295 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEE
Confidence 6774 56777766653 57899999999864 332 2334444566
Q ss_pred eCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhh---HHHHHHHHHhhcCCeEEEEeCCCCHHH
Q 009494 344 VGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG---ADLLSNAISVTTGMKALSIHGEKPMKE 420 (533)
Q Consensus 344 ~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~---a~~l~~~L~~~~~~~~~~~h~~~~~~e 420 (533)
++.......++.+.+.... .+...+..++... +.++||||+++.. |+.+++.|. ..|+++..+||++
T Consensus 296 v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~-~~gi~v~~~hg~l---- 365 (1176)
T PRK09401 296 VGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLE-DLGINAELAISGF---- 365 (1176)
T ss_pred ecCcccccCCceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHH-HCCCcEEEEeCcH----
Confidence 6666666677777776654 4566677777543 3579999999888 999999998 7899999999999
Q ss_pred HHHHHHHHhcCCCcEEEE----cccccccCCCCC-ccEEEEcCCCC------CHhHHHHhhccccC
Q 009494 421 RREIMRSFLVGEVPVIVA----TGILGRGVELLG-VRQVIIFDMPN------SIKEYVHQIGRASQ 475 (533)
Q Consensus 421 r~~~~~~f~~g~~~VLva----T~~~~~Gldi~~-v~~VI~~d~p~------s~~~y~qriGR~gR 475 (533)
...++.|++|+++|||| |++++||||+|+ +++|||||.|. ..+.|.||+||+..
T Consensus 366 -~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 -ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred -HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 689999999999 89999999998 67889999999964
No 55
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=350.95 Aligned_cols=332 Identities=22% Similarity=0.302 Sum_probs=265.2
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 141 SLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 141 ~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.+++.+.+.++..|+..++|-|+.++...+ .++|+|+++|||||||+++++.+++.+.+ .+.++++++|+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---------~~~k~vYivPl 85 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---------GGGKVVYIVPL 85 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---------cCCcEEEEeCh
Confidence 477788888888899888888888887766 56999999999999999999999998875 25779999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 220 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
++||.+.+++++++ ..+|+++....|+...... -..+++|+|+||+++..++++....+..+++||+||+|.+.+.
T Consensus 86 kALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 86 KALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 99999999999944 5669999999998875552 2355899999999999888887778899999999999999888
Q ss_pred CcHHHHHHHHHhC----CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC--CCCCcCceEEEEEecchh------HH
Q 009494 300 GFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESNK------KK 367 (533)
Q Consensus 300 ~~~~~~~~i~~~~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~v~~~~~~~~~~~------k~ 367 (533)
..++.++.|+.++ ...|++++|||+|+ ...++.|+..++.. ....+ ....-...+.+....... ..
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~-~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVE-SDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccc-cCCCCcccccCCccceEEEEecCccccccccch
Confidence 6778888887776 44799999999999 88899998887762 22222 222222233333333222 33
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc------------------------------------CCeEEE
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT------------------------------------GMKALS 411 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~------------------------------------~~~~~~ 411 (533)
...+..+......++++||||+|+..+...++.+.... -..+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 55666666667778999999999999998888886210 012458
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cC-----CCCCHhHHHHhhccccCCCC--cc
Q 009494 412 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-----MPNSIKEYVHQIGRASQMGD--EG 480 (533)
Q Consensus 412 ~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d-----~p~s~~~y~qriGR~gR~g~--~g 480 (533)
+|++++.++|..+.+.|+.|.++||+||+++++|+|+|.-.+||- |+ .+-+..++.||+|||||.|- .|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 999999999999999999999999999999999999997655553 55 45578999999999999985 48
Q ss_pred EEEEEec
Q 009494 481 TAIVFVN 487 (533)
Q Consensus 481 ~~~~~~~ 487 (533)
.++++.+
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 8888883
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.2e-39 Score=343.27 Aligned_cols=312 Identities=17% Similarity=0.170 Sum_probs=231.2
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHH---------HHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 160 PVQMQAIPSALSGKSLLVSANTGSGKTAS---------FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 160 p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~---------~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.+|.++++.++.++++++.|+||||||.+ |++|.+..+.... .....++++|++|||+||.|+...+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~----~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID----PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc----cccCCcEEEEECcHHHHHHHHHHHH
Confidence 58999999999999999999999999986 3334444332110 1234568999999999999999888
Q ss_pred HHHcCC---CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHH
Q 009494 231 KLLGKG---LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 307 (533)
Q Consensus 231 ~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~ 307 (533)
.+.... .+..+...+||.+. .+.....+..+|+++|++.. ...++++++||+||||++...+ ..+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHH
Confidence 765433 35667888999873 22222234679999997521 1257889999999999987765 45555
Q ss_pred HHHhC--CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc---------hhHHHHHHHHHhh
Q 009494 308 IFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES---------NKKKQKLFDILMS 376 (533)
Q Consensus 308 i~~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~---------~~k~~~l~~~l~~ 376 (533)
++... ..+|+++||||++.+++.+. .++.++..+.+.. .....+.+.+..... ......+...+..
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 55444 23589999999998887774 5666776666543 223345555432211 1112234444443
Q ss_pred cc-CCCCCeEEEEcchhhHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHH-hcCCCcEEEEcccccccCCCCCccE
Q 009494 377 KQ-HFTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSF-LVGEVPVIVATGILGRGVELLGVRQ 453 (533)
Q Consensus 377 ~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f-~~g~~~VLvaT~~~~~Gldi~~v~~ 453 (533)
.. ..++.+|||++++.+++.+++.|.+.. ++.+..+||++++. +++++.| ++|+.+|||||++++||+|+|+|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 234689999999999999999998443 68999999999974 5667777 6899999999999999999999999
Q ss_pred EEEcC---CCC---------CHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 454 VIIFD---MPN---------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 454 VI~~d---~p~---------s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
||+++ .|. |.+.|+||+|||||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 565 888999999999999 78999999998764
No 57
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.4e-39 Score=335.62 Aligned_cols=317 Identities=19% Similarity=0.229 Sum_probs=253.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++...+ .++.++|++||++||.|.++++..+
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al----------~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL----------AGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh----------cCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 54 79999999999999999 99999999999999999998754 3678999999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC-------------------------CCCCCeeE
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD-------------------------IELDDIRM 287 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~-------------------------~~l~~~~~ 287 (533)
...+++++.+++||.+. +..+...+++|+++|...| .++|..+- .....+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 99999999999999764 3456667899999999888 66665431 11356889
Q ss_pred EEEecchhhhh---------------c---CcHHHHHHHHHhC-------------------------------------
Q 009494 288 FVLDEVDCMLQ---------------R---GFRDQVMQIFRAI------------------------------------- 312 (533)
Q Consensus 288 vVvDEah~~~~---------------~---~~~~~~~~i~~~~------------------------------------- 312 (533)
.||||+|.++= . .+......+...+
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 99999998750 0 0000000000000
Q ss_pred -------------------------------------------C------------------------------------
Q 009494 313 -------------------------------------------S------------------------------------ 313 (533)
Q Consensus 313 -------------------------------------------~------------------------------------ 313 (533)
+
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 0
Q ss_pred --CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcch
Q 009494 314 --LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSR 391 (533)
Q Consensus 314 --~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~ 391 (533)
..++.+||||.+.....+...+..+++.+....+.... ..+.++.+....|...|.+.+......+.++||||+++
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 01577899999988888999998888887766654322 33445566677788888888877555567899999999
Q ss_pred hhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---Ccc-----EEEEcCCCCCH
Q 009494 392 LGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---GVR-----QVIIFDMPNSI 463 (533)
Q Consensus 392 ~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~---~v~-----~VI~~d~p~s~ 463 (533)
..++.++..|. ..|+++..+||++++ |+..+..|..+...|+|||++++||+||+ +|. +||++++|.|.
T Consensus 484 ~~se~L~~~L~-~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 484 AASERLSALLR-EAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHH-HCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 99999999998 789999999998664 44555556655667999999999999999 666 99999999999
Q ss_pred hHHHHhhccccCCCCccEEEEEecCcC
Q 009494 464 KEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 464 ~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
..|.||+||+||.|.+|.+++|++.+|
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999999999866
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-38 Score=336.44 Aligned_cols=349 Identities=14% Similarity=0.123 Sum_probs=238.8
Q ss_pred HHHHHHHHHhcCceeecCCCCCcccCccc---CCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCcEEEEccCCCch
Q 009494 111 IGQTDSLRKRLEINVKGDAVPAPILSFSS---CSLSQKLLQNIEAAG--YDMPTPVQMQAIPSALSGKSLLVSANTGSGK 185 (533)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~p~~~~~f~~---~~l~~~l~~~l~~~g--~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGK 185 (533)
.+.+..+-++.++.+.=+ ......+. ..+...+...+...| ...|+++|.++++.++.+++.++++|||+||
T Consensus 66 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGK 142 (501)
T PHA02558 66 VGQLKKFAKNRGYSIWVD---PRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGK 142 (501)
T ss_pred HHHHHHHHHhcCCeEecC---cccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCH
Confidence 456666666667655321 11111111 112222333232222 4589999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceee
Q 009494 186 TASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIV 265 (533)
Q Consensus 186 T~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii 265 (533)
|+++... ...+.. ....++||++||++|+.||.+.++++.......+..+.+|.... .+.+|+|
T Consensus 143 T~i~~~l-~~~~~~--------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~V 206 (501)
T PHA02558 143 SLIQYLL-SRYYLE--------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVV 206 (501)
T ss_pred HHHHHHH-HHHHHh--------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEE
Confidence 9976542 222222 22347999999999999999999988754344555666765432 3479999
Q ss_pred cCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHH---HHhhC-----
Q 009494 266 GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKM---SSSIS----- 336 (533)
Q Consensus 266 ~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l---~~~~~----- 336 (533)
+||+++.+... ..++++++||+||||++... .+..++..+ +.+++++||||++...... ...+.
T Consensus 207 aT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~ 279 (501)
T PHA02558 207 STWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKP 279 (501)
T ss_pred eeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCceEE
Confidence 99999865432 24678999999999998754 455666666 4678999999997532111 11111
Q ss_pred ------------CCeEEE--EeCCCCCCCcC-----ceEEEE-EecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHH
Q 009494 337 ------------KDIVVV--SVGKPNMPNKA-----VKQLAI-WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 337 ------------~~~~~i--~~~~~~~~~~~-----v~~~~~-~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~ 396 (533)
..+... ........... +...+. ......+...+..++......+.+++||+++.++++.
T Consensus 280 v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~ 359 (501)
T PHA02558 280 VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKP 359 (501)
T ss_pred ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHH
Confidence 111000 00000000000 000000 1112223344444544444456789999999999999
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCCCccEEEEcCCCCCHhHHHHhhccccC
Q 009494 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT-GILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 397 l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT-~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR 475 (533)
+++.|. ..+.++..+||++++++|..+++.|++|+..||||| +++++|+|+|++++||+++++.|...|+||+||++|
T Consensus 360 L~~~L~-~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R 438 (501)
T PHA02558 360 LYEMLK-KVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLR 438 (501)
T ss_pred HHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcccc
Confidence 999998 688999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CCCccEEEEEe
Q 009494 476 MGDEGTAIVFV 486 (533)
Q Consensus 476 ~g~~g~~~~~~ 486 (533)
.+..+...+++
T Consensus 439 ~~~~K~~~~i~ 449 (501)
T PHA02558 439 KHGSKSIATVW 449 (501)
T ss_pred CCCCCceEEEE
Confidence 98655444433
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1e-38 Score=366.30 Aligned_cols=321 Identities=18% Similarity=0.242 Sum_probs=248.4
Q ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHH
Q 009494 145 KLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 145 ~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
++.+.+++ .|| .|+++|.++++.+++|++++++||||||||+.++++++... ..++++|||+||++|+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~----------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA----------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH----------hcCCeEEEEECHHHHH
Confidence 34455665 699 69999999999999999999999999999996555544321 2357899999999999
Q ss_pred HHHHHHHHHHcCCC--CCeEEEEEcCcchHHHH---HHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 224 IQVEEQAKLLGKGL--PFKTALVVGGDAMARQV---YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 224 ~Q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
.|+.+.++.++... ++++..++|+.+..++. ..+..+ ++|+|+||++|.+.+... ...+++++||||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecc
Confidence 99999999988764 46777888888776653 344554 899999999998766542 22679999999999998
Q ss_pred h-----------cCcHHHHHH----HHH----------------------hC-CCCc-EEEEeccCCHHHHHHHHhhCCC
Q 009494 298 Q-----------RGFRDQVMQ----IFR----------------------AI-SLPQ-ILMYSATISQEVEKMSSSISKD 338 (533)
Q Consensus 298 ~-----------~~~~~~~~~----i~~----------------------~~-~~~q-~l~~SAT~~~~~~~l~~~~~~~ 338 (533)
+ +||.+++.. ++. .+ ..++ ++++|||.+.... . ..++.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhc
Confidence 6 588888864 432 12 2344 5779999986311 1 123356
Q ss_pred eEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhh---HHHHHHHHHhhcCCeEEEEeCC
Q 009494 339 IVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG---ADLLSNAISVTTGMKALSIHGE 415 (533)
Q Consensus 339 ~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~---a~~l~~~L~~~~~~~~~~~h~~ 415 (533)
+..+.++.......++.+.+.......+ ..+.+++... +..+||||+++.. |+.+++.|. ..|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~-~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLL-EDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHH-HCCCeEEEecch
Confidence 6667777766666777777766654444 5677777554 4579999999876 589999998 789999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEc----ccccccCCCCC-ccEEEEcCCCC---CHhHHHHhh-------------cccc
Q 009494 416 KPMKERREIMRSFLVGEVPVIVAT----GILGRGVELLG-VRQVIIFDMPN---SIKEYVHQI-------------GRAS 474 (533)
Q Consensus 416 ~~~~er~~~~~~f~~g~~~VLvaT----~~~~~Gldi~~-v~~VI~~d~p~---s~~~y~qri-------------GR~g 474 (533)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||+|
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999998 99999999999 888776665 9999
Q ss_pred CCCCccEEEEEecCcC
Q 009494 475 QMGDEGTAIVFVNEEN 490 (533)
Q Consensus 475 R~g~~g~~~~~~~~~~ 490 (533)
|.|..+.++......+
T Consensus 442 ~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 442 KEGIPIEGVLDVFPED 457 (1638)
T ss_pred ccCCcchhHHHhHHHH
Confidence 9998877764433333
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-37 Score=305.67 Aligned_cols=322 Identities=23% Similarity=0.267 Sum_probs=236.7
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++.+|.......+.+ |+|++.|||-|||+++++-+..++.+ ..+ ++|+++||+-|+.|....++++.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~--------~~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW--------FGG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh--------cCC-eEEEecCCchHHHHHHHHHHHHh
Confidence 347889999988877765 99999999999999998888777765 334 89999999999999999999997
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-cHHHHHHHHHhCC
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAIS 313 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~~ 313 (533)
....-.++.+.|.....+. .......+|+|+||+.+.+-+..+.+++.++.++|||||||-.... |-......+..-.
T Consensus 83 ~ip~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 83 GIPEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred CCChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 7655667777766554443 4444557999999999999999999999999999999999976433 3333334555567
Q ss_pred CCcEEEEeccCCHHHHH---HHHhhCCCeEEEEeCCCC------------------------------------------
Q 009494 314 LPQILMYSATISQEVEK---MSSSISKDIVVVSVGKPN------------------------------------------ 348 (533)
Q Consensus 314 ~~q~l~~SAT~~~~~~~---l~~~~~~~~~~i~~~~~~------------------------------------------ 348 (533)
++.++++|||+....+. ....+.-..+.+......
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999995322221 111111111111110000
Q ss_pred ---------CCC--------------cC-----------------------------ce---E-----------------
Q 009494 349 ---------MPN--------------KA-----------------------------VK---Q----------------- 356 (533)
Q Consensus 349 ---------~~~--------------~~-----------------------------v~---~----------------- 356 (533)
... .. +. +
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence 000 00 00 0
Q ss_pred ------------------EEEEecchhHHHHHHHHHhhcc--CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEE-EE---
Q 009494 357 ------------------LAIWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SI--- 412 (533)
Q Consensus 357 ------------------~~~~~~~~~k~~~l~~~l~~~~--~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~-~~--- 412 (533)
.....-...|...+.+++.+.. ..+.++|||++.+.+|+.+.++|. ..+..+. .+
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~-~~~~~~~~rFiGQ 400 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLK-KIGIKARVRFIGQ 400 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHH-hcCCcceeEEeec
Confidence 0000001122334444444433 345699999999999999999998 5555543 22
Q ss_pred -----eCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 413 -----HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 413 -----h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
..||+|.++.+++++|+.|+++|||||+++++|+|+|.+++||+|++-.|.-.++||.||+||. +.|.+++++.
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEe
Confidence 3589999999999999999999999999999999999999999999999999999999999996 8999999998
Q ss_pred Cc
Q 009494 488 EE 489 (533)
Q Consensus 488 ~~ 489 (533)
.+
T Consensus 480 ~g 481 (542)
T COG1111 480 EG 481 (542)
T ss_pred cC
Confidence 76
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=313.62 Aligned_cols=336 Identities=23% Similarity=0.334 Sum_probs=270.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
..+++.+|+++..-|+..|++.+.|+|..++.+.+ .|+|.+|+++|+||||++..++=+..++. .+.+.|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------~g~Kml 265 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------GGKKML 265 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------CCCeEE
Confidence 45678899999999999999999999999999855 89999999999999999999988887763 578899
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHH----HHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEE
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV----YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVv 290 (533)
+++|..+||+|-++.|++-...+++++..-+|-.-....- ......++|||+|++-+..+++.+ -.+.+++.|||
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVI 344 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVI 344 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEe
Confidence 9999999999999999977788899988888754332211 112234899999999997777766 57899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHhC----CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEec-chh
Q 009494 291 DEVDCMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE-SNK 365 (533)
Q Consensus 291 DEah~~~~~~~~~~~~~i~~~~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~-~~~ 365 (533)
||+|.+-+...++-+.-++.++ +..|+|++|||+.+ -+.+++.+..+.+...- .+-++..+..... ...
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~e 418 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYDE-----RPVPLERHLVFARNESE 418 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeecC-----CCCChhHeeeeecCchH
Confidence 9999888755555444444443 78999999999987 46678888777765432 2223444444444 556
Q ss_pred HHHHHHHHHhh------ccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009494 366 KKQKLFDILMS------KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 366 k~~~l~~~l~~------~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT 439 (533)
|.+.+..+... .....+++|||++|+..|..++.+|. ..|+++..+|++++..+|..+...|.++++.++|+|
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~-~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT-GKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh-cCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 66666655543 23456799999999999999999999 779999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEE----cCCCC-CHhHHHHhhccccCCCC--ccEEEEEecCc
Q 009494 440 GILGRGVELLGVRQVII----FDMPN-SIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~----~d~p~-s~~~y~qriGR~gR~g~--~g~~~~~~~~~ 489 (533)
-+++.|+|+|.- .||+ ++.-| |+.+|.||.|||||.+- .|+++++..+.
T Consensus 498 AAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999964 4554 23333 89999999999999874 59999998764
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-37 Score=332.77 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=248.9
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|..+++.+..|+ ++.+.||+|||++|++|++...+. |+.++|++||++||.|.++++..
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~----------G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE----------GKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc----------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 366 89999999999988887 999999999999999999866543 67799999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhhhc------
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQR------ 299 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~~~------ 299 (533)
+...+++++.++.||.+...+.. ...+++|+++||++| .+++..+- ..+..+.++||||||+|+=.
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 99999999999999988444333 345699999999999 66665432 35688999999999998610
Q ss_pred ----------CcHHHHHHHHHhCC---------C----------------------------------------------
Q 009494 300 ----------GFRDQVMQIFRAIS---------L---------------------------------------------- 314 (533)
Q Consensus 300 ----------~~~~~~~~i~~~~~---------~---------------------------------------------- 314 (533)
........+...+. .
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 01111111111110 0
Q ss_pred ---------------------------------------------------------------CcEEEEeccCCHHHHHH
Q 009494 315 ---------------------------------------------------------------PQILMYSATISQEVEKM 331 (533)
Q Consensus 315 ---------------------------------------------------------------~q~l~~SAT~~~~~~~l 331 (533)
..+.+||+|...+...+
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 03556666665545555
Q ss_pred HHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEE
Q 009494 332 SSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALS 411 (533)
Q Consensus 332 ~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~ 411 (533)
...+..+.+.+....+..... ....++.....|...+.+.+......+.|+||||+|+..++.++..|. ..|+++..
T Consensus 381 ~~~Y~l~v~~IPt~kp~~r~d--~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~-~~gi~~~~ 457 (790)
T PRK09200 381 FEVYNMEVVQIPTNRPIIRID--YPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLD-EAGIPHNL 457 (790)
T ss_pred HHHhCCcEEECCCCCCccccc--CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCCEEE
Confidence 555555554443333222111 112344556677888888887765567899999999999999999998 78999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC---CCcc-----EEEEcCCCCCHhHHHHhhccccCCCCccEEE
Q 009494 412 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL---LGVR-----QVIIFDMPNSIKEYVHQIGRASQMGDEGTAI 483 (533)
Q Consensus 412 ~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi---~~v~-----~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~ 483 (533)
+||++.+.++..+...+..| .|+|||++++||+|+ |.|. +||++++|.|...|+||+||+||.|.+|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999999988888887776 699999999999999 6898 9999999999999999999999999999999
Q ss_pred EEecCcCH
Q 009494 484 VFVNEENK 491 (533)
Q Consensus 484 ~~~~~~~~ 491 (533)
+|++..|.
T Consensus 536 ~~is~eD~ 543 (790)
T PRK09200 536 FFISLEDD 543 (790)
T ss_pred EEEcchHH
Confidence 99997653
No 63
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.9e-37 Score=348.19 Aligned_cols=291 Identities=24% Similarity=0.337 Sum_probs=221.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 145 KLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
++.+.+.+.....|+|+|..+++.++.|++++++||||||||+ |.+|+...+.. .++++||++||++||.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeCHHHHHH
Confidence 3344455544447999999999999999999999999999997 66777655432 3678999999999999
Q ss_pred HHHHHHHHHcCCCCCeEE---EEEcCcchHHH---HHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 225 QVEEQAKLLGKGLPFKTA---LVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 225 Q~~~~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
|+++.++.++...++... .++||.+..++ ...+.+ +++|+|+||++|.+.+..-. . +++++|+||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhh
Confidence 999999999887665543 45677776553 334444 49999999999988776422 2 89999999999999
Q ss_pred h-----------cCcHHH-HHHHHH----------------------hC-CCCc--EEEEecc-CCHHHHHHHHhhCCCe
Q 009494 298 Q-----------RGFRDQ-VMQIFR----------------------AI-SLPQ--ILMYSAT-ISQEVEKMSSSISKDI 339 (533)
Q Consensus 298 ~-----------~~~~~~-~~~i~~----------------------~~-~~~q--~l~~SAT-~~~~~~~l~~~~~~~~ 339 (533)
+ +||..+ +..++. .+ ...| ++++||| .|..+.. .++.++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 8 677664 444432 22 2233 5678999 5654432 334455
Q ss_pred EEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcch---hhHHHHHHHHHhhcCCeEEEEeCCC
Q 009494 340 VVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSR---LGADLLSNAISVTTGMKALSIHGEK 416 (533)
Q Consensus 340 ~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~---~~a~~l~~~L~~~~~~~~~~~h~~~ 416 (533)
..+.++.......++.+.+..... +...+.+++... +.++||||+++ +.|+.+++.|. ..|+++..+||++
T Consensus 290 l~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~-~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 290 LGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLE-NHGVKAVAYHATK 363 (1171)
T ss_pred cceEecCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHH-hCCceEEEEeCCC
Confidence 556666666566677776654443 245566766543 35799999999 99999999998 7799999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEE----cccccccCCCCC-ccEEEEcCCCC
Q 009494 417 PMKERREIMRSFLVGEVPVIVA----TGILGRGVELLG-VRQVIIFDMPN 461 (533)
Q Consensus 417 ~~~er~~~~~~f~~g~~~VLva----T~~~~~Gldi~~-v~~VI~~d~p~ 461 (533)
+ ..+++.|++|+++|||| |++++||||+|+ +++|||||+|.
T Consensus 364 ~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 P----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred C----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 7 36899999999999999 489999999999 89999988874
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.4e-38 Score=319.20 Aligned_cols=300 Identities=17% Similarity=0.165 Sum_probs=209.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH--
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA-- 251 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~-- 251 (533)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.++.++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 47999999999999999999977543 44678999999999999999999887432 233334332210
Q ss_pred ----------HHHHHH------HcCCceeecCHHHHHHHHHcCC----CCC--CCeeEEEEecchhhhhcCcHHHHHHHH
Q 009494 252 ----------RQVYRI------QQGVELIVGTPGRLIDLLMKHD----IEL--DDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 252 ----------~~~~~l------~~~~~Iii~Tp~~l~~~l~~~~----~~l--~~~~~vVvDEah~~~~~~~~~~~~~i~ 309 (533)
...... .-..+|+++||+++...+.... ..+ -..++||+||+|.+.+.++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 000111 1136799999999988766521 111 123789999999998765443 55555
Q ss_pred HhC--CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEec--chhHHHHHHHHHhhccCCCCCeE
Q 009494 310 RAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE--SNKKKQKLFDILMSKQHFTPPAV 385 (533)
Q Consensus 310 ~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~--~~~k~~~l~~~l~~~~~~~~~~L 385 (533)
..+ ...|++++|||+|+.+..+................... ....+.+.... ...+...+..++.. ...++++|
T Consensus 149 ~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~l 226 (358)
T TIGR01587 149 EVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIA 226 (358)
T ss_pred HHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHH-hhCCCeEE
Confidence 554 46899999999998777776655433211111111000 00111111111 12333344444432 23467999
Q ss_pred EEEcchhhHHHHHHHHHhhcCC--eEEEEeCCCCHHHHHH----HHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC
Q 009494 386 VYVGSRLGADLLSNAISVTTGM--KALSIHGEKPMKERRE----IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM 459 (533)
Q Consensus 386 Vf~~s~~~a~~l~~~L~~~~~~--~~~~~h~~~~~~er~~----~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~ 459 (533)
|||++++.|+.+++.|+ ..+. .+..+||++++.+|.. +++.|++|+.+|||||+++++|+|++ +++||++..
T Consensus 227 Vf~~t~~~~~~~~~~L~-~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~ 304 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLK-ENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA 304 (358)
T ss_pred EEECCHHHHHHHHHHHH-hhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC
Confidence 99999999999999998 4443 5899999999999976 48899999999999999999999995 889999887
Q ss_pred CCCHhHHHHhhccccCCCCc----cEEEEEecCcCH
Q 009494 460 PNSIKEYVHQIGRASQMGDE----GTAIVFVNEENK 491 (533)
Q Consensus 460 p~s~~~y~qriGR~gR~g~~----g~~~~~~~~~~~ 491 (533)
| .+.|+||+||+||.|.. |.+++|....+.
T Consensus 305 ~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 305 P--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred C--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 7 88999999999999864 377777765443
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.6e-37 Score=337.14 Aligned_cols=304 Identities=18% Similarity=0.246 Sum_probs=230.4
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCCC
Q 009494 161 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPF 239 (533)
Q Consensus 161 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~ 239 (533)
+-.+.+..+..+++++++|+||||||++|.++++.... .+++++|+.|||++|.|+++.+. .+....+.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 34456667778899999999999999999999987641 24579999999999999999875 45555566
Q ss_pred eEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch-hhhhcCcHHHH-HHHHHhC-CCCc
Q 009494 240 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRDQV-MQIFRAI-SLPQ 316 (533)
Q Consensus 240 ~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah-~~~~~~~~~~~-~~i~~~~-~~~q 316 (533)
.+....++... ...+.+|+|+|||+|++.+... ..++++++|||||+| ++++.++.-.+ ..+...+ ++.|
T Consensus 76 ~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 76 TVGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred EEEEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 66666555432 2345799999999999988764 579999999999999 57766654333 3444444 6789
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHH-----HHHHHHHhhccCCCCCeEEEEcch
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-----QKLFDILMSKQHFTPPAVVYVGSR 391 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~LVf~~s~ 391 (533)
+|+||||++... + ..++.+...+...... ..+.+.+.......+. ..+..++. ...+.+|||++++
T Consensus 149 lIlmSATl~~~~--l-~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~ 219 (819)
T TIGR01970 149 ILAMSATLDGER--L-SSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALA---SETGSILVFLPGQ 219 (819)
T ss_pred EEEEeCCCCHHH--H-HHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHH---hcCCcEEEEECCH
Confidence 999999999753 3 3444443334433222 1244444443333222 12222222 2357899999999
Q ss_pred hhHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC--------
Q 009494 392 LGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-------- 461 (533)
Q Consensus 392 ~~a~~l~~~L~~~--~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~-------- 461 (533)
.+++.+++.|.+. .++.+..+||++++.+|..+++.|++|..+|||||+++++|||||+|++||++++|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 9999999999843 478899999999999999999999999999999999999999999999999999875
Q ss_pred ----------CHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 462 ----------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 462 ----------s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
|-..|.||.|||||. ..|.|+.|+++.+.
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345699999999998 79999999987643
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=9.5e-37 Score=323.67 Aligned_cols=317 Identities=20% Similarity=0.247 Sum_probs=237.0
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
+|+|.|++..+...+..++.++||+|||++|++|++.+++. ++.++|++|+++||.|+.+++..+...+|
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 44444455444444447999999999999999998776543 45699999999999999999999999999
Q ss_pred CeEEEEEcCcc---hHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhhcC--------
Q 009494 239 FKTALVVGGDA---MARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQRG-------- 300 (533)
Q Consensus 239 ~~~~~~~gg~~---~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~~~-------- 300 (533)
+.+...+++.. ...+..+...+++|+++||++| .+++..+ ...+..+.++|+||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99998887632 2233344446799999999999 6666432 3457889999999999986210
Q ss_pred --------cHHHHHHHHHhCCC----------------------------------------------------------
Q 009494 301 --------FRDQVMQIFRAISL---------------------------------------------------------- 314 (533)
Q Consensus 301 --------~~~~~~~i~~~~~~---------------------------------------------------------- 314 (533)
.......+...+..
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 11111111111100
Q ss_pred ------------------------------------------------------------CcEEEEeccCCHHHHHHHHh
Q 009494 315 ------------------------------------------------------------PQILMYSATISQEVEKMSSS 334 (533)
Q Consensus 315 ------------------------------------------------------------~q~l~~SAT~~~~~~~l~~~ 334 (533)
.++.+||+|...+...+.+.
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 13556666655555556555
Q ss_pred hCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeC
Q 009494 335 ISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG 414 (533)
Q Consensus 335 ~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~ 414 (533)
+..+.+.|....+..... .....+.....|...+.+.+.+....+.|+||||+++..++.++..|. ..|+++..+||
T Consensus 380 Y~l~v~~IPt~kp~~r~d--~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~-~~gi~~~~L~a 456 (762)
T TIGR03714 380 YSLSVVKIPTNKPIIRID--YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLL-REGIPHNLLNA 456 (762)
T ss_pred hCCCEEEcCCCCCeeeee--CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHH-HCCCCEEEecC
Confidence 555544444333322211 122455666778888888887766678899999999999999999998 78999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---------CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEE
Q 009494 415 EKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 415 ~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~---------~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~ 485 (533)
++.+.++..+...++.| .|+|||++++||+||+ ++.+|+++++|....+ +||+||+||.|.+|.+++|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999988888777777 6999999999999999 9999999999988766 9999999999999999999
Q ss_pred ecCcCH
Q 009494 486 VNEENK 491 (533)
Q Consensus 486 ~~~~~~ 491 (533)
++..|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 998653
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.2e-37 Score=335.62 Aligned_cols=305 Identities=16% Similarity=0.238 Sum_probs=228.6
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCCCe
Q 009494 162 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFK 240 (533)
Q Consensus 162 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~~ 240 (533)
-.+.+..+.+++++++.|+||||||++|.++++.... .+.+++|++|||++|.|+++.+. .+....+..
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 3456667778899999999999999999998886421 23479999999999999999875 455556677
Q ss_pred EEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh-hhhcCc-HHHHHHHHHhC-CCCcE
Q 009494 241 TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-MLQRGF-RDQVMQIFRAI-SLPQI 317 (533)
Q Consensus 241 ~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~-~~~~~~-~~~~~~i~~~~-~~~q~ 317 (533)
+...+++..... .+.+|+|+|||+|.+++... ..++++++|||||+|. .++..+ ...+..+++.+ ++.|+
T Consensus 80 VGy~vr~~~~~~------~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 80 VGYRMRAESKVG------PNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEEecCccccC------CCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 777777664322 34689999999999988764 4799999999999996 444332 12334455544 67899
Q ss_pred EEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHH-HHHHHHhhc-cCCCCCeEEEEcchhhHH
Q 009494 318 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ-KLFDILMSK-QHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 318 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~-~l~~~l~~~-~~~~~~~LVf~~s~~~a~ 395 (533)
++||||++.. .+. .++.+...+...... ..+.+.+.......+.. .+...+... ....+.+|||++++.+++
T Consensus 153 ilmSATl~~~--~l~-~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 153 LIMSATLDND--RLQ-QLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EEEecCCCHH--HHH-HhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 9999999974 343 444443334333221 23555554444333332 111122111 123578999999999999
Q ss_pred HHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC------------
Q 009494 396 LLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------ 461 (533)
Q Consensus 396 ~l~~~L~~~--~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~------------ 461 (533)
.+++.|... .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||+|++||+++.+.
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 999999842 467899999999999999999999999999999999999999999999999987764
Q ss_pred ------CHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 462 ------SIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 462 ------s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
|-+.|.||.|||||. ..|.|+.++++.+
T Consensus 307 L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred eEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 346899999999998 6999999998654
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.5e-36 Score=318.41 Aligned_cols=319 Identities=21% Similarity=0.247 Sum_probs=250.4
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|..+...+..|+ ++.++||+|||++|.+|++...+. +..++|++||++||.|.++++..
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 354 78999999998888776 999999999999999999755443 34599999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhh-cC----
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ-RG---- 300 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~-~~---- 300 (533)
+...+++++.++.||.+...... ...++|+++||++| .++++.+ ...+..+.++|+||+|+|+- ..
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL 197 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL 197 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHH
Confidence 99999999999999988655333 34589999999999 8988876 35678999999999999862 00
Q ss_pred -----------cHHHHHHHHHhCC--------------------------------------------------------
Q 009494 301 -----------FRDQVMQIFRAIS-------------------------------------------------------- 313 (533)
Q Consensus 301 -----------~~~~~~~i~~~~~-------------------------------------------------------- 313 (533)
.......+.+.+.
T Consensus 198 iisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~ 277 (745)
T TIGR00963 198 IISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFE 277 (745)
T ss_pred hhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 0000001111100
Q ss_pred --------------------------------------------------------------CCcEEEEeccCCHHHHHH
Q 009494 314 --------------------------------------------------------------LPQILMYSATISQEVEKM 331 (533)
Q Consensus 314 --------------------------------------------------------------~~q~l~~SAT~~~~~~~l 331 (533)
...+.+||+|...+...+
T Consensus 278 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 357 (745)
T TIGR00963 278 KDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF 357 (745)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH
Confidence 013556666666655666
Q ss_pred HHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEE
Q 009494 332 SSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALS 411 (533)
Q Consensus 332 ~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~ 411 (533)
...+..+.+.+....+...... ...++.....|...+.+.+......+.|+||||+++..++.+++.|. ..|+++..
T Consensus 358 ~~iY~l~vv~IPtnkp~~R~d~--~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~-~~gi~~~~ 434 (745)
T TIGR00963 358 EKIYNLEVVVVPTNRPVIRKDL--SDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLK-ERGIPHNV 434 (745)
T ss_pred HHHhCCCEEEeCCCCCeeeeeC--CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HcCCCeEE
Confidence 6666666555544443322221 12233445567777777776666778899999999999999999998 78999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC-------ccEEEEcCCCCCHhHHHHhhccccCCCCccEEEE
Q 009494 412 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG-------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 412 ~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~-------v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
+|++ +.+|+..+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|+.||+||.|.+|.+..
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9998 779999999999999999999999999999998 5599999999999999999999999999999999
Q ss_pred EecCcCH
Q 009494 485 FVNEENK 491 (533)
Q Consensus 485 ~~~~~~~ 491 (533)
|++..|.
T Consensus 513 ~ls~eD~ 519 (745)
T TIGR00963 513 FLSLEDN 519 (745)
T ss_pred EEeccHH
Confidence 9998763
No 69
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=323.84 Aligned_cols=343 Identities=17% Similarity=0.227 Sum_probs=262.4
Q ss_pred HcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
-++|..++.+|.+++|.++ ++.|.|||||||||||..|+|.+++.+.+......-....-++++|+|+++||..+.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 3578899999999999988 678999999999999999999999988763322223346788999999999999999888
Q ss_pred HHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC---CCCCCeeEEEEecchhhhhcCcHHHHHH
Q 009494 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD---IELDDIRMFVLDEVDCMLQRGFRDQVMQ 307 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~---~~l~~~~~vVvDEah~~~~~~~~~~~~~ 307 (533)
.+-...+|+.+..+.|....... + ...++|||+||+++.-..++.. .-++.+++||+||+|.+-+ ..++.++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~t--e-i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKT--E-IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHH--H-HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHH
Confidence 87777789999999998776653 2 3448999999999944333322 2367899999999996654 46888888
Q ss_pred HHHhC--------CCCcEEEEeccCCHHHHHHHHhhCCC-eEEEEeCCCCCCCcCceEEEEEecch---hHHH----HHH
Q 009494 308 IFRAI--------SLPQILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIWVESN---KKKQ----KLF 371 (533)
Q Consensus 308 i~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~---~k~~----~l~ 371 (533)
|+.++ ...+++++|||+|+ .++++.++..+ +.-+........+-.+.+.++..... .+.. ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 87766 56799999999999 88899888776 33444444455555566666555443 1111 122
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc---C-------------------CeEEEEeCCCCHHHHHHHHHHHh
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT---G-------------------MKALSIHGEKPMKERREIMRSFL 429 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~---~-------------------~~~~~~h~~~~~~er~~~~~~f~ 429 (533)
+.+.+....+.+++|||.++..+...|+.|.+.. | .....+|+||...+|..+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 2333344567899999999999999998886221 1 23457999999999999999999
Q ss_pred cCCCcEEEEcccccccCCCCCccEEEE----cCCCC------CHhHHHHhhccccCCC--CccEEEEEecCcCHHHHHHH
Q 009494 430 VGEVPVIVATGILGRGVELLGVRQVII----FDMPN------SIKEYVHQIGRASQMG--DEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 430 ~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d~p~------s~~~y~qriGR~gR~g--~~g~~~~~~~~~~~~~~~~l 497 (533)
.|.++||+||.++++|+|+|+--++|- ||.-. ++.+.+|..|||||.+ ..|.++++.+.+...++..|
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 999999999999999999996544443 44322 5778899999999985 46999999988777766665
Q ss_pred HH
Q 009494 498 VD 499 (533)
Q Consensus 498 ~~ 499 (533)
+.
T Consensus 500 l~ 501 (1230)
T KOG0952|consen 500 LT 501 (1230)
T ss_pred Hc
Confidence 53
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9e-36 Score=326.28 Aligned_cols=334 Identities=23% Similarity=0.321 Sum_probs=261.4
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
....+..++.+.|+..|+++|.+|+..+.+|+|++|+.+||||||.+|++|++.+++. +...++|+|.||++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~--------~~~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR--------DPSARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh--------CcCccEEEEechhh
Confidence 4445688889999999999999999999999999999999999999999999999987 33447999999999
Q ss_pred HHHHHHHHHHHHcCCCC--CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC----CCCCCeeEEEEecchh
Q 009494 222 LCIQVEEQAKLLGKGLP--FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD----IELDDIRMFVLDEVDC 295 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~----~~l~~~~~vVvDEah~ 295 (533)
||+...+.++++...++ ++...+.|.....+...-+.+.++|+++||.+|..++.++. ..+++++|||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 99999999999988777 55555555555444435566779999999999977555432 3467899999999997
Q ss_pred hhhcCcHHHHHHHHHhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEec-----
Q 009494 296 MLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE----- 362 (533)
Q Consensus 296 ~~~~~~~~~~~~i~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~----- 362 (533)
.- ..|+..+..+++++ ..+|+|+.|||+.+.-+........+.. ..+.....+... .....+..
T Consensus 207 Yr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~-~~v~~~g~~~~~-~~~~~~~p~~~~~ 283 (851)
T COG1205 207 YR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE-VPVDEDGSPRGL-RYFVRREPPIREL 283 (851)
T ss_pred cc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce-eeccCCCCCCCc-eEEEEeCCcchhh
Confidence 53 34788777777766 4789999999998855544444444433 324444333332 33333333
Q ss_pred ----chhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHH----HHHHhhcC----CeEEEEeCCCCHHHHHHHHHHHhc
Q 009494 363 ----SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLS----NAISVTTG----MKALSIHGEKPMKERREIMRSFLV 430 (533)
Q Consensus 363 ----~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~----~~L~~~~~----~~~~~~h~~~~~~er~~~~~~f~~ 430 (533)
...+...+..++......+-++|+|+.++..++.++ ..+. ..+ ..+..+++++...+|..+...|+.
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~-~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLV-REGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHh-hcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 123444444555555556778999999999999997 3333 233 467889999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCccEEEEcCCCC-CHhHHHHhhccccCCCCccEEEEEec
Q 009494 431 GEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 431 g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~-s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
|++.++++|+++.-|+|+.+++.||....|. +..++.||.||+||.++.+..+....
T Consensus 363 g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 363 GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999999999 99999999999999997776666665
No 71
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-37 Score=293.29 Aligned_cols=278 Identities=26% Similarity=0.442 Sum_probs=223.9
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHcCC---CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeE
Q 009494 211 PLAMVLTPTRELCIQVEEQAKLLGKG---LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRM 287 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~ 287 (533)
|.++|+-|.|+|++|.+..+++|... -.++..++.||.....|...+..+.+|+|+||+|+.+.+..+.+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 57899999999999999977666443 346778999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHhC-------CCCcEEEEeccCCH-HHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEE
Q 009494 288 FVLDEVDCMLQRGFRDQVMQIFRAI-------SLPQILMYSATISQ-EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI 359 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~~~~i~~~~-------~~~q~l~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~ 359 (533)
+|+||+|.++..++...+.++...+ ...|.+..|||+.. ++..+..+.+.-|..+........+..+.+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999999989988888887777 34689999999853 345666666666666665554444333333322
Q ss_pred Eecch------------------------------hHHHHHHHHHhh-------ccCCCCCeEEEEcchhhHHHHHHHHH
Q 009494 360 WVESN------------------------------KKKQKLFDILMS-------KQHFTPPAVVYVGSRLGADLLSNAIS 402 (533)
Q Consensus 360 ~~~~~------------------------------~k~~~l~~~l~~-------~~~~~~~~LVf~~s~~~a~~l~~~L~ 402 (533)
.+... .....-..++.. ..+...+.||||.++..|+.|.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 21110 000111111111 12234589999999999999999998
Q ss_pred hhcC--CeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCcc
Q 009494 403 VTTG--MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG 480 (533)
Q Consensus 403 ~~~~--~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g 480 (533)
+..+ +.++++||+..+.||...++.|..+++++||||++++||+||..+-++||..+|.....|+|||||+||+-+-|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 6554 67899999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEecC
Q 009494 481 TAIVFVNE 488 (533)
Q Consensus 481 ~~~~~~~~ 488 (533)
.|+.++..
T Consensus 607 laislvat 614 (725)
T KOG0349|consen 607 LAISLVAT 614 (725)
T ss_pred eeEEEeec
Confidence 99998753
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.6e-34 Score=322.32 Aligned_cols=322 Identities=21% Similarity=0.266 Sum_probs=237.9
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+|+++|.+++..++.+ ++++++|||+|||+++++++...+. ..+.++||++||++|+.|+.+.++++..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 47899999999888876 9999999999999999988887652 2456899999999999999999998865
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHH-HHHhCCC
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ-IFRAISL 314 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~-i~~~~~~ 314 (533)
..+.++..+.|+.+... ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+.. .......
T Consensus 84 ~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 44456777777665443 445556789999999999888878888899999999999999875432333333 3333456
Q ss_pred CcEEEEeccCCHH---HHHHHHhhCCCeEEEEeCCCC-------------------------------------------
Q 009494 315 PQILMYSATISQE---VEKMSSSISKDIVVVSVGKPN------------------------------------------- 348 (533)
Q Consensus 315 ~q~l~~SAT~~~~---~~~l~~~~~~~~~~i~~~~~~------------------------------------------- 348 (533)
++++++|||+... +..+...+....+.+......
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999997422 222222222111111100000
Q ss_pred -CC--Cc-------------CceEEE------------------------------------------------------
Q 009494 349 -MP--NK-------------AVKQLA------------------------------------------------------ 358 (533)
Q Consensus 349 -~~--~~-------------~v~~~~------------------------------------------------------ 358 (533)
.. .. .+....
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 00 00 000000
Q ss_pred ------------------EEecchhHHHHHHHHHhhcc--CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCC---
Q 009494 359 ------------------IWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGE--- 415 (533)
Q Consensus 359 ------------------~~~~~~~k~~~l~~~l~~~~--~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~--- 415 (533)
.......|...|.+++.... ..+.++||||+++..++.+++.|. ..++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~-~~~~~~~~~~g~~~~ 401 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLE-KEGIKAVRFVGQASK 401 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHH-hCCCceEEEEccccc
Confidence 00011223344455554432 456799999999999999999997 788888889886
Q ss_pred -----CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 416 -----KPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 416 -----~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|. |.+++++....
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999864 88888887543
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-35 Score=323.41 Aligned_cols=331 Identities=22% Similarity=0.328 Sum_probs=254.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH
Q 009494 146 LLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 146 l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.......+|+..++|-|.++|...+.|++.++.+|||+||+++|.+|++-. ++..|||.|..+|.+.
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-------------~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-------------GGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-------------CCceEEeccHHHHHHH
Confidence 333445579999999999999999999999999999999999999998742 4479999999999664
Q ss_pred HHHHHHHHcCCCCCeEEEEEcCcchHHHH---HHHHcC---CceeecCHHHHHHHHH--cCCCCCCC---eeEEEEecch
Q 009494 226 VEEQAKLLGKGLPFKTALVVGGDAMARQV---YRIQQG---VELIVGTPGRLIDLLM--KHDIELDD---IRMFVLDEVD 294 (533)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~---~~Iii~Tp~~l~~~l~--~~~~~l~~---~~~vVvDEah 294 (533)
+...+ ...++....+.++....++. ..+..+ ++|++.||+++...-. .....+.. +.++|+||||
T Consensus 320 ---Qv~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAH 395 (941)
T KOG0351|consen 320 ---QVTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAH 395 (941)
T ss_pred ---HHHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHH
Confidence 44445 23368888888888776433 333333 8899999999854221 11223344 8999999999
Q ss_pred hhhhcC--cHHHHHHHH---HhCCCCcEEEEeccCCHHHHHHH-Hhh-CCCeEEEEeCCCCCCCcCceEEEEEecchhHH
Q 009494 295 CMLQRG--FRDQVMQIF---RAISLPQILMYSATISQEVEKMS-SSI-SKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 367 (533)
Q Consensus 295 ~~~~~~--~~~~~~~i~---~~~~~~q~l~~SAT~~~~~~~l~-~~~-~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~ 367 (533)
+.++|| |++.|.++. .+.+...++++|||....++.-. ..+ +.++..+. .....+++...+..-......
T Consensus 396 CVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~ 472 (941)
T KOG0351|consen 396 CVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDAL 472 (941)
T ss_pred HhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccch
Confidence 999998 888887764 44477899999999987776543 333 23433222 222233343333332222222
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+...+. .......+||||.++.+++.++..|+ ..++.+..||+||+..+|..+.+.|..++++|+|||=++++|||
T Consensus 473 ~~~~~~~~-~~~~~~s~IIYC~sr~~ce~vs~~L~-~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 473 LDILEESK-LRHPDQSGIIYCLSRKECEQVSAVLR-SLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred HHHHHHhh-hcCCCCCeEEEeCCcchHHHHHHHHH-HhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 23333333 33456789999999999999999999 88899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHH
Q 009494 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 448 i~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 498 (533)
.|+|+.||||.+|.|++.|.|-+|||||.|....|++|++..|...++.++
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999987655554443
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-36 Score=285.44 Aligned_cols=334 Identities=21% Similarity=0.277 Sum_probs=245.0
Q ss_pred HHHHHHHHc-CCCCC-CHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 145 KLLQNIEAA-GYDMP-TPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 145 ~l~~~l~~~-g~~~p-~p~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
.+.+.|++. |+.++ ++.|.+++..+.. ..|+.|++|||+||+++|.||.+.+ +...||+.|..+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------~gITIV~SPLiA 72 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------GGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------CCeEEEehHHHH
Confidence 455667664 77765 8999999999885 4699999999999999999999864 347999999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH---H---HHHHcCCceeecCHHHHHHHHHc----CCCCCCCeeEEEEe
Q 009494 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---V---YRIQQGVELIVGTPGRLIDLLMK----HDIELDDIRMFVLD 291 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~---~~l~~~~~Iii~Tp~~l~~~l~~----~~~~l~~~~~vVvD 291 (533)
|.....+-+.++. +.+..+.+..+..+. + .+.+....+++.||+....-..+ ...+-.-+.|+|+|
T Consensus 73 LIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEec
Confidence 9877666666552 333334333333222 1 22234578999999975332211 12233458899999
Q ss_pred cchhhhhcC--cHHHHHHH---HHhCCCCcEEEEeccCCHHHHHHH--HhhCCCeEEEEeCCCCCCCcCceEEEEEec-c
Q 009494 292 EVDCMLQRG--FRDQVMQI---FRAISLPQILMYSATISQEVEKMS--SSISKDIVVVSVGKPNMPNKAVKQLAIWVE-S 363 (533)
Q Consensus 292 Eah~~~~~~--~~~~~~~i---~~~~~~~q~l~~SAT~~~~~~~l~--~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~-~ 363 (533)
|||++.+|| |++.+..+ .+.++....+.+|||-.++++... ...+.+|+.+.-... .. .++...+.+-. -
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~-FR-~NLFYD~~~K~~I 226 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT-FR-DNLFYDNHMKSFI 226 (641)
T ss_pred hhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-hh-hhhhHHHHHHHHh
Confidence 999999998 88887765 445588899999999998886543 334566654432211 11 11100000000 0
Q ss_pred hhHHHHHHHHHhhc-----------cCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC
Q 009494 364 NKKKQKLFDILMSK-----------QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 364 ~~k~~~l~~~l~~~-----------~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~ 432 (533)
..-...|.++.... ....+..||||.+++.++.++-.|. ..|+++..+|+|+...||..+.+.|.+++
T Consensus 227 ~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~-~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 227 TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE-IAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh-hcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 01122333332221 1223578999999999999999998 88999999999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHH
Q 009494 433 VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 433 ~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 498 (533)
++||+||..+++|+|-|+|++|||+++|.++.-|.|-.|||||.|...+|-++++.+|...+.-|+
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988866554443
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-34 Score=305.00 Aligned_cols=323 Identities=14% Similarity=0.131 Sum_probs=226.9
Q ss_pred CCCCHHHHHHHHHHhC-C--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALS-G--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
..++|+|.+++..+.. + ++.++++|||+|||++.+..+ ..+ +.++|||||+..|+.||.+++.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l------------~k~tLILvps~~Lv~QW~~ef~~ 320 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV------------KKSCLVLCTSAVSVEQWKQQFKM 320 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 3689999999999883 3 478999999999999876543 222 24599999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc--------CCCCCCCeeEEEEecchhhhhcCcHHH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--------HDIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~--------~~~~l~~~~~vVvDEah~~~~~~~~~~ 304 (533)
+....+..+..+.|+.... ......|+|+|++.+.....+ ..+.-..+++||+||||++.. ..
T Consensus 321 ~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~ 391 (732)
T TIGR00603 321 WSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AM 391 (732)
T ss_pred hcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HH
Confidence 8654344555555543211 123368999999987543221 112235789999999999853 55
Q ss_pred HHHHHHhCCCCcEEEEeccCCHHHHH--HHHhhCCCeEEEEeCCCC----CCCcCceEEEEEe-----------------
Q 009494 305 VMQIFRAISLPQILMYSATISQEVEK--MSSSISKDIVVVSVGKPN----MPNKAVKQLAIWV----------------- 361 (533)
Q Consensus 305 ~~~i~~~~~~~q~l~~SAT~~~~~~~--l~~~~~~~~~~i~~~~~~----~~~~~v~~~~~~~----------------- 361 (533)
+..++..+.....+++|||+..+-.. ....+..+. .....-.. -....+.-..+++
T Consensus 392 fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~-vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 392 FRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPK-LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCe-eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 66677777788899999998642211 112222221 11111000 0000111111111
Q ss_pred ------cchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC-CCc
Q 009494 362 ------ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP 434 (533)
Q Consensus 362 ------~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g-~~~ 434 (533)
.+..|...+..++......+.++||||.+...+..++..|. +..+||++++.+|..+++.|+.| .++
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~~i~ 544 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNPKVN 544 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCCCcc
Confidence 12233333334444433467799999999999888888764 34689999999999999999975 889
Q ss_pred EEEEcccccccCCCCCccEEEEcCCC-CCHhHHHHhhccccCCCCccEE-------EEEecCc--CHHHHHHHHHHHHHc
Q 009494 435 VIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGDEGTA-------IVFVNEE--NKNLFQELVDILKSS 504 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~d~p-~s~~~y~qriGR~gR~g~~g~~-------~~~~~~~--~~~~~~~l~~~l~~~ 504 (533)
+||+|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ ++|++.+ +..+..+-.++|-..
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 99999999999999999999999998 4999999999999999877665 7777765 566777888888887
Q ss_pred CCc
Q 009494 505 GAV 507 (533)
Q Consensus 505 ~~~ 507 (533)
|..
T Consensus 625 GY~ 627 (732)
T TIGR00603 625 GYS 627 (732)
T ss_pred CCe
Confidence 764
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.1e-34 Score=297.72 Aligned_cols=322 Identities=21% Similarity=0.243 Sum_probs=228.5
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.-.++.+|.+.....+ |+|+||++|||+|||++++..++.++.. ..+.++++++||+-|+.|....+..++
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw--------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW--------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc--------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 3478999999999988 9999999999999999999999988765 334789999999999999887777766
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCC-CCCeeEEEEecchhhhhcCcHHHHH-HHHHhC
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIE-LDDIRMFVLDEVDCMLQRGFRDQVM-QIFRAI 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~-l~~~~~vVvDEah~~~~~~~~~~~~-~i~~~~ 312 (533)
.. ..+....||.........+....+|+|+||+.+.+-+..+... ++++.++||||||+-........++ ..+..-
T Consensus 131 ~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 131 IP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred Cc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 54 5666666664444444456667899999999999888876543 6999999999999977655444444 333332
Q ss_pred -CCCcEEEEeccCCHHHHHHHHhh---CCC--------------------------------------------------
Q 009494 313 -SLPQILMYSATISQEVEKMSSSI---SKD-------------------------------------------------- 338 (533)
Q Consensus 313 -~~~q~l~~SAT~~~~~~~l~~~~---~~~-------------------------------------------------- 338 (533)
...|+|++|||+....+...... ...
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 44599999999653322211100 000
Q ss_pred --eEEEEeCC----------CCCCCcCce--EE--------------------EEE------------------------
Q 009494 339 --IVVVSVGK----------PNMPNKAVK--QL--------------------AIW------------------------ 360 (533)
Q Consensus 339 --~~~i~~~~----------~~~~~~~v~--~~--------------------~~~------------------------ 360 (533)
...+.... .....++.. +. +..
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 00000000 000000000 00 000
Q ss_pred --------------------e--cchhHHHHHHHHHhhc--cCCCCCeEEEEcchhhHHHHHHHHHh--hcCCeEEEEe-
Q 009494 361 --------------------V--ESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV--TTGMKALSIH- 413 (533)
Q Consensus 361 --------------------~--~~~~k~~~l~~~l~~~--~~~~~~~LVf~~s~~~a~~l~~~L~~--~~~~~~~~~h- 413 (533)
. ....|...+.+++.+. .....++||||.++..|..|.++|.+ ..+++...+-
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 0 0112333444444433 23446999999999999999999973 2233333322
Q ss_pred -------CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEe
Q 009494 414 -------GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 414 -------~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~ 486 (533)
.+|++.++.++++.|++|+++|||||+++++||||+.+++||.||.-.|+...+||.|| ||+ +.|.+++++
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~ 526 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLT 526 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999 997 578888888
Q ss_pred cCc
Q 009494 487 NEE 489 (533)
Q Consensus 487 ~~~ 489 (533)
+..
T Consensus 527 t~~ 529 (746)
T KOG0354|consen 527 TGS 529 (746)
T ss_pred cch
Confidence 743
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-33 Score=285.91 Aligned_cols=290 Identities=17% Similarity=0.187 Sum_probs=199.3
Q ss_pred HHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC-
Q 009494 161 VQMQAIPSALSGKS--LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL- 237 (533)
Q Consensus 161 ~Q~~~i~~~~~~~~--~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~- 237 (533)
+|.++++.+..+.+ ++++||||||||.+|++|++.. +.++++++|+++|++|+++.++.+...+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~ 67 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-------------ENDTIALYPTNALIEDQTEAIKEFVDVFK 67 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-------------CCCEEEEeChHHHHHHHHHHHHHHHHhcC
Confidence 59999999998874 7889999999999999998742 2358999999999999999988876432
Q ss_pred ---CCeEEEEEcCcchHH--HH------------------HHH-HcCCceeecCHHHHHHHHHcC----C-C---CCCCe
Q 009494 238 ---PFKTALVVGGDAMAR--QV------------------YRI-QQGVELIVGTPGRLIDLLMKH----D-I---ELDDI 285 (533)
Q Consensus 238 ---~~~~~~~~gg~~~~~--~~------------------~~l-~~~~~Iii~Tp~~l~~~l~~~----~-~---~l~~~ 285 (533)
+..+..+.|. ...+ .. ..+ ...+.|+++||+.|..++... . . .+..+
T Consensus 68 ~~~~~~v~~~~g~-~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 68 PERDVNLLHVSKA-TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCceEEEecCC-chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 3444444443 2211 00 001 235789999999997665431 1 1 25789
Q ss_pred eEEEEecchhhhhcCc-----HHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhh--CCCeEEEEeCCCCC--------
Q 009494 286 RMFVLDEVDCMLQRGF-----RDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI--SKDIVVVSVGKPNM-------- 349 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~-----~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~-------- 349 (533)
++||+||+|.+..++. ......++... ...+++++|||+++.+....... ...++....+....
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~ 226 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELE 226 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhh
Confidence 9999999999764331 11233333322 35799999999999877766654 34444333333100
Q ss_pred ----------CCcCceEEEEEecchhHHHH---HHHHHhhcc--CCCCCeEEEEcchhhHHHHHHHHHhh-cCCeEEEEe
Q 009494 350 ----------PNKAVKQLAIWVESNKKKQK---LFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVT-TGMKALSIH 413 (533)
Q Consensus 350 ----------~~~~v~~~~~~~~~~~k~~~---l~~~l~~~~--~~~~~~LVf~~s~~~a~~l~~~L~~~-~~~~~~~~h 413 (533)
..+.+.+.+.. ....+... +.+.+.+.. ..+.++||||+++..++.++..|+.. .++.+..+|
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~ 305 (357)
T TIGR03158 227 ADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRIT 305 (357)
T ss_pred ccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeee
Confidence 01234443433 22222222 223332211 24568999999999999999999832 246788999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhcccc
Q 009494 414 GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS 474 (533)
Q Consensus 414 ~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~g 474 (533)
|.+++.+|.++ ++.+|||||+++++|+|++.+ +|| ++ |.+.+.|+||+||+|
T Consensus 306 g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 306 GFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999988754 478999999999999999986 666 45 889999999999997
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.3e-31 Score=290.54 Aligned_cols=310 Identities=16% Similarity=0.230 Sum_probs=225.0
Q ss_pred CCCHHHHHHHHHHhCC---CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSG---KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.+++.|.++++.+..+ +++++.|+||||||.+|+.++...+. .+.++||++|+++|+.|+.+.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 6899999999999874 78999999999999999887666543 2567999999999999999998875
Q ss_pred cCCCCCeEEEEEcCcchHHHHH---HHH-cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc------HH
Q 009494 234 GKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF------RD 303 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~------~~ 303 (533)
+ +.++..++|+.+..+... .+. ..++|+|+|++.+. ..++++++||+||+|.....+. ..
T Consensus 214 f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 214 F---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred h---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 4 467888998877655433 333 34899999998763 3578899999999998653321 12
Q ss_pred HHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC--CCCCcCceEEEEEecchh-------HHHHHHHHH
Q 009494 304 QVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESNK-------KKQKLFDIL 374 (533)
Q Consensus 304 ~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~v~~~~~~~~~~~-------k~~~l~~~l 374 (533)
.+........+.+++++|||++.+....+... ....+..... ....+.+. +....... -...+++.+
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~--~id~~~~~~~~~~~~ls~~l~~~i 359 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVE--IIDMRELLRGENGSFLSPPLLEAI 359 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEE--EEechhhhhhcccCCCCHHHHHHH
Confidence 34444455678999999999886555444322 2222222221 11122221 11111100 113466666
Q ss_pred hhccCCCCCeEEEEcch------------------------------------------------------------hhH
Q 009494 375 MSKQHFTPPAVVYVGSR------------------------------------------------------------LGA 394 (533)
Q Consensus 375 ~~~~~~~~~~LVf~~s~------------------------------------------------------------~~a 394 (533)
.+....+.++|||+|.+ ..+
T Consensus 360 ~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~ 439 (679)
T PRK05580 360 KQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGT 439 (679)
T ss_pred HHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccH
Confidence 66666677899998853 256
Q ss_pred HHHHHHHHhh-cCCeEEEEeCCCCH--HHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC--C--------
Q 009494 395 DLLSNAISVT-TGMKALSIHGEKPM--KERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP--N-------- 461 (533)
Q Consensus 395 ~~l~~~L~~~-~~~~~~~~h~~~~~--~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p--~-------- 461 (533)
+.+++.|.+. .+.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+.+|.. .
T Consensus 440 e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~ 519 (679)
T PRK05580 440 ERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRAS 519 (679)
T ss_pred HHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchH
Confidence 7778888743 26788999999874 579999999999999999999999999999999999765543 2
Q ss_pred --CHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 462 --SIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 462 --s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
....|.|++||+||.+..|.+++.....+
T Consensus 520 Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 520 ERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 23679999999999999999998776443
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=261.39 Aligned_cols=349 Identities=20% Similarity=0.322 Sum_probs=259.3
Q ss_pred ccCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE
Q 009494 138 SSCSLSQKLLQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 138 ~~~~l~~~l~~~l~~~-g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
++++.+.+..+.|+.. ..++++|.|..+|++.++|+++++..|||.||+++|.+|++.. ...+||+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------------dg~alvi 140 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------------DGFALVI 140 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------------CCceEee
Confidence 3466677777777653 6778999999999999999999999999999999999999852 4569999
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHH----H---cCCceeecCHHHHHHHH---Hc--CCCCCCC
Q 009494 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRI----Q---QGVELIVGTPGRLIDLL---MK--HDIELDD 284 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~---~~~~Iii~Tp~~l~~~l---~~--~~~~l~~ 284 (533)
+|..+|.+...-+++.++ +....+....+..+ ..++ . ....+++.||+++...- .+ ..+....
T Consensus 141 ~plislmedqil~lkqlg----i~as~lnansske~-~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLG----IDASMLNANSSKEE-AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred chhHHHHHHHHHHHHHhC----cchhhccCcccHHH-HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 999999887766777664 33333433333322 1221 1 23679999999984422 11 3456778
Q ss_pred eeEEEEecchhhhhcC--cHHHHHH---HHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEE
Q 009494 285 IRMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI 359 (533)
Q Consensus 285 ~~~vVvDEah~~~~~~--~~~~~~~---i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~ 359 (533)
+++|.+||+|+..+|| |++.+.. +.+.++...++++|||..+.+...++.++.-...+.. ......+++...+.
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~ 294 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVR 294 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEee
Confidence 9999999999999998 6666543 3455689999999999998887776665542211111 11222333332222
Q ss_pred Eecch--hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEE
Q 009494 360 WVESN--KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 360 ~~~~~--~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLv 437 (533)
.-+.. .-.+.+..++.. ...+...||||-|++.++.++..|+ ..|+.+..+|+.|.+.+|.-+-+.|..|+++|+|
T Consensus 295 qkp~n~dd~~edi~k~i~~-~f~gqsgiiyc~sq~d~ekva~alk-n~gi~a~~yha~lep~dks~~hq~w~a~eiqviv 372 (695)
T KOG0353|consen 295 QKPGNEDDCIEDIAKLIKG-DFAGQSGIIYCFSQKDCEKVAKALK-NHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIV 372 (695)
T ss_pred eCCCChHHHHHHHHHHhcc-ccCCCcceEEEeccccHHHHHHHHH-hcCccccccccccCccccccccccccccceEEEE
Confidence 22221 122334444432 2345678999999999999999998 8999999999999999999999999999999999
Q ss_pred EcccccccCCCCCccEEEEcCCCCCHhHHHH-------------------------------------------hhcccc
Q 009494 438 ATGILGRGVELLGVRQVIIFDMPNSIKEYVH-------------------------------------------QIGRAS 474 (533)
Q Consensus 438 aT~~~~~Gldi~~v~~VI~~d~p~s~~~y~q-------------------------------------------riGR~g 474 (533)
||-.+++|||-|+|++||+..+|.|++.|.| ..||+|
T Consensus 373 atvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgrag 452 (695)
T KOG0353|consen 373 ATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAG 452 (695)
T ss_pred EEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccc
Confidence 9999999999999999999999999999999 679999
Q ss_pred CCCCccEEEEEecCcCHHHHHHHHHHHHHcCCch
Q 009494 475 QMGDEGTAIVFVNEENKNLFQELVDILKSSGAVR 508 (533)
Q Consensus 475 R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 508 (533)
|.+.+..|++++.-.|.-....++. ++..|+..
T Consensus 453 rd~~~a~cilyy~~~difk~ssmv~-~e~~g~q~ 485 (695)
T KOG0353|consen 453 RDDMKADCILYYGFADIFKISSMVQ-MENTGIQK 485 (695)
T ss_pred cCCCcccEEEEechHHHHhHHHHHH-HHhhhHHH
Confidence 9999999999998666554444442 44555543
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.9e-33 Score=293.71 Aligned_cols=339 Identities=19% Similarity=0.230 Sum_probs=260.0
Q ss_pred CCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHhhhhhc-ccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLH-HSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
|..+++++|....++.+.+ .++++|||||+|||..+++-+++.+...... ...+-...++++++|..+|++.|...+.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 6677999999999998855 6899999999999999999999988654321 1222344589999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC---CCCCeeEEEEecchhhhhcCcHHHHHHH
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI---ELDDIRMFVLDEVDCMLQRGFRDQVMQI 308 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~---~l~~~~~vVvDEah~~~~~~~~~~~~~i 308 (533)
+....+|+++.-.+|......+. ..+.+|++|||+.+. .+.++.- ..+-++++|+||+|.+-| ..++.++.|
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESI 460 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESI 460 (1674)
T ss_pred hhccccCcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHH
Confidence 88889999999999986654421 245899999999984 4444322 244578999999996544 457777777
Q ss_pred HHhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHH-------HHHH
Q 009494 309 FRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK-------LFDI 373 (533)
Q Consensus 309 ~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~-------l~~~ 373 (533)
..+. ..++++++|||+|+ .++.+..+..++.-+...++..++-++.|.++-+.......+ ..+.
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeK 539 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEK 539 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHH
Confidence 6665 47899999999998 666777666666666666777777778888887765543222 2333
Q ss_pred HhhccCCCCCeEEEEcchhhHHHHHHHHHh------------------------------------hcCCeEEEEeCCCC
Q 009494 374 LMSKQHFTPPAVVYVGSRLGADLLSNAISV------------------------------------TTGMKALSIHGEKP 417 (533)
Q Consensus 374 l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~------------------------------------~~~~~~~~~h~~~~ 417 (533)
+..... .+++||||.|++++-..|++++. ...+.+..+|+||+
T Consensus 540 Vm~~ag-k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~ 618 (1674)
T KOG0951|consen 540 VLEHAG-KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN 618 (1674)
T ss_pred HHHhCC-CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC
Confidence 333333 37999999999988888887761 11355679999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cCC------CCCHhHHHHhhccccCCCC--ccEEEEE
Q 009494 418 MKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FDM------PNSIKEYVHQIGRASQMGD--EGTAIVF 485 (533)
Q Consensus 418 ~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d~------p~s~~~y~qriGR~gR~g~--~g~~~~~ 485 (533)
+.+|..+.+.|+.|.++|+|+|.++++|+|+|.-.++|- ||+ +.++.+.+||.|||||.+- .|..++.
T Consensus 619 R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiii 698 (1674)
T KOG0951|consen 619 RKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIII 698 (1674)
T ss_pred cchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeec
Confidence 999999999999999999999999999999997655553 553 4489999999999999874 4777887
Q ss_pred ecCcCHHHHHHHHH
Q 009494 486 VNEENKNLFQELVD 499 (533)
Q Consensus 486 ~~~~~~~~~~~l~~ 499 (533)
.+.++..++..+++
T Consensus 699 t~~se~qyyls~mn 712 (1674)
T KOG0951|consen 699 TDHSELQYYLSLMN 712 (1674)
T ss_pred cCchHhhhhHHhhh
Confidence 77776665555443
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.7e-32 Score=301.38 Aligned_cols=302 Identities=17% Similarity=0.236 Sum_probs=214.6
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc----HHHHHHHHHHHHH-Hc
Q 009494 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT----RELCIQVEEQAKL-LG 234 (533)
Q Consensus 160 p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt----r~L~~Q~~~~~~~-~~ 234 (533)
.+-.+.+..+..++.++++|+||||||+ .+|.+..-.. .+....+++..|+ ++||.++.+++.. ++
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-------RGVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 3344566666777788999999999999 5785433211 1222345555675 5777777777763 44
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch-hhhhcCcHH-HHHHHHHhC
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRD-QVMQIFRAI 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah-~~~~~~~~~-~~~~i~~~~ 312 (533)
...|+.+ ... . ....+++|+++|||+|++.+.... .++++++||||||| ++++.+|.. .+..++...
T Consensus 148 ~~VGY~v----rf~---~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r 216 (1294)
T PRK11131 148 GCVGYKV----RFN---D---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR 216 (1294)
T ss_pred ceeceee----cCc---c---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcC
Confidence 3333322 111 1 123568999999999999988765 48999999999999 688888764 355555555
Q ss_pred CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecch------hHHHHHHHHHhhc-cCCCCCeE
Q 009494 313 SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN------KKKQKLFDILMSK-QHFTPPAV 385 (533)
Q Consensus 313 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~------~k~~~l~~~l~~~-~~~~~~~L 385 (533)
++.|+|+||||++. +.+.+.+...++ +.+..... .+...+...... .....++..+... ....+.+|
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 77899999999985 467777766664 34433222 244444433221 1222333333222 23356899
Q ss_pred EEEcchhhHHHHHHHHHhhcCC---eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC---
Q 009494 386 VYVGSRLGADLLSNAISVTTGM---KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM--- 459 (533)
Q Consensus 386 Vf~~s~~~a~~l~~~L~~~~~~---~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~--- 459 (533)
||+++..+++.+++.|. ..++ .+..+||++++.+|..+++. .|..+|||||+++++|||+|++++||+++.
T Consensus 291 VFLpg~~EIe~lae~L~-~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 291 IFMSGEREIRDTADALN-KLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEcCCHHHHHHHHHHHH-hcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999998 4444 46789999999999999886 578899999999999999999999999862
Q ss_pred ------------C---CCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 460 ------------P---NSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 460 ------------p---~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
| .|.+.|.||+|||||. ..|.|+.++++.+.
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4668999999999999 78999999997653
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.3e-31 Score=289.35 Aligned_cols=331 Identities=17% Similarity=0.194 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|.|||..+...++.. ..+|+..++|.|||+.+.+.+-..+.. +...++|||||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 5899999998777643 468999999999999876655443332 445679999998 89999999986543
Q ss_pred CCCCCeEEEEEcCcchHHHHH---HHHcCCceeecCHHHHHHHHH-cCCCCCCCeeEEEEecchhhhhcC--cHHHHHHH
Q 009494 235 KGLPFKTALVVGGDAMARQVY---RIQQGVELIVGTPGRLIDLLM-KHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQI 308 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~---~l~~~~~Iii~Tp~~l~~~l~-~~~~~l~~~~~vVvDEah~~~~~~--~~~~~~~i 308 (533)
. +....+.++ ....... ......+++|+|++.+...-. ...+.-..+++||+||||++.... ....+ ..
T Consensus 223 ~---l~~~i~~~~-~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y-~~ 297 (956)
T PRK04914 223 N---LRFSLFDEE-RYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY-QV 297 (956)
T ss_pred C---CCeEEEcCc-chhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH-HH
Confidence 2 333333222 1111000 011236799999987754111 111223478999999999986311 11122 23
Q ss_pred HHhC--CCCcEEEEeccCCH--------------------------------HHHHHHH-----------------hhCC
Q 009494 309 FRAI--SLPQILMYSATISQ--------------------------------EVEKMSS-----------------SISK 337 (533)
Q Consensus 309 ~~~~--~~~q~l~~SAT~~~--------------------------------~~~~l~~-----------------~~~~ 337 (533)
+..+ ..+.++++|||+-. .+..... .++.
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 3333 34678999999521 0000000 0000
Q ss_pred -----------------------------------CeEEEEeCCC---CCCCcCceEEE---------------------
Q 009494 338 -----------------------------------DIVVVSVGKP---NMPNKAVKQLA--------------------- 358 (533)
Q Consensus 338 -----------------------------------~~~~i~~~~~---~~~~~~v~~~~--------------------- 358 (533)
..+.+..... ..+...+..+.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~ 457 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARD 457 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHh
Confidence 0001100000 00000000000
Q ss_pred ---------------EEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Q 009494 359 ---------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 359 ---------------~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~ 423 (533)
.|.....|...|.+++... .+.++||||+++..+..+++.|+...|+++..+||+|++.+|..
T Consensus 458 ~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~ 535 (956)
T PRK04914 458 MLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDR 535 (956)
T ss_pred hcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHH
Confidence 1222233455566666543 25789999999999999999996577999999999999999999
Q ss_pred HHHHHhcC--CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHH
Q 009494 424 IMRSFLVG--EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 424 ~~~~f~~g--~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 501 (533)
+++.|+++ ..+|||||+++++|+|++.+++|||||+|+++..|.||+||++|.|+++.+.++...........+.+.+
T Consensus 536 ~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 536 AAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred HHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 99999984 6999999999999999999999999999999999999999999999999988888776666666666666
Q ss_pred HH
Q 009494 502 KS 503 (533)
Q Consensus 502 ~~ 503 (533)
..
T Consensus 616 ~~ 617 (956)
T PRK04914 616 HE 617 (956)
T ss_pred hh
Confidence 65
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=8.8e-31 Score=269.08 Aligned_cols=337 Identities=18% Similarity=0.269 Sum_probs=262.6
Q ss_pred CCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 142 LSQKLLQNI-EAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 142 l~~~l~~~l-~~~g~~~p~p~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
....+++++ ...+| ++|..|++++..+... .+-+++|.-|||||++++++++..+. .|.++.
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----------~G~Q~A 315 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----------AGYQAA 315 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----------cCCeeE
Confidence 344555555 45577 8999999999998843 35699999999999999999998763 477899
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch---HHHHHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEE
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVv 290 (533)
+++||.-||.|.+..+.++...+++++..+.|.... ......+.+| .+|+|+| +-+.+..+.+.++.++|+
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIi 390 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVII 390 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEE
Confidence 999999999999999999999999999999996553 4444556666 9999999 556667788999999999
Q ss_pred ecchhhhhcCcHHHHHHHH-HhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHH
Q 009494 291 DEVDCMLQRGFRDQVMQIF-RAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 291 DEah~~~~~~~~~~~~~i~-~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~ 368 (533)
||=||.. -.-+..+ ++=. .+.++.||||+-+.. ++-....+.-+..+.+.......+....+ . ..+..
T Consensus 391 DEQHRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i--~-~~~~~ 460 (677)
T COG1200 391 DEQHRFG-----VHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVI--P-HERRP 460 (677)
T ss_pred ecccccc-----HHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEe--c-cccHH
Confidence 9999953 3333333 3334 689999999987634 44444444444333343333344443333 2 24556
Q ss_pred HHHHHHhhccCCCCCeEEEEcchh--------hHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRL--------GADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~--------~a~~l~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT 439 (533)
.+++.+......+.++-+.|+-.+ .|..+++.|+... ++.+..+||.|+..++.++|+.|++|+++|||||
T Consensus 461 ~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 461 EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT 540 (677)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 777777777778899999999765 4556666776333 5679999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCC-CHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 440 GILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~~d~p~-s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
.+++-|+|+|++.++|+.+.-. -.++.-|--||+||.+..+.|++++.+...+..++-++++.++
T Consensus 541 TVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 541 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred eEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 9999999999999999987643 5677778889999999999999999998877778888888876
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1.8e-30 Score=277.77 Aligned_cols=316 Identities=17% Similarity=0.206 Sum_probs=237.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-+--.+..| -|+.++||+|||++|.+|++..++. +..++|++||++||.|.++++..+...
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 6777887766555555 4899999999999999999987653 345999999999999999999999999
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC-CCCC-----CCeeEEEEecchhhhhc-C--------
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH-DIEL-----DDIRMFVLDEVDCMLQR-G-------- 300 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~-~~~l-----~~~~~vVvDEah~~~~~-~-------- 300 (533)
+|+++.+++||.+...+...+ .++|+++||++| .++++.+ .+++ ..+.++||||||.|+-. .
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 999999999998877654433 589999999999 9999876 3444 58999999999998610 0
Q ss_pred -------cHHHHHHHHHhCC---------------CC-------------------------------------------
Q 009494 301 -------FRDQVMQIFRAIS---------------LP------------------------------------------- 315 (533)
Q Consensus 301 -------~~~~~~~i~~~~~---------------~~------------------------------------------- 315 (533)
....+..+...+. ..
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 1111111111110 01
Q ss_pred -------------------------------------------------------------------------cEEEEec
Q 009494 316 -------------------------------------------------------------------------QILMYSA 322 (533)
Q Consensus 316 -------------------------------------------------------------------------q~l~~SA 322 (533)
++-+||+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 1223333
Q ss_pred cCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHH
Q 009494 323 TISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAIS 402 (533)
Q Consensus 323 T~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~ 402 (533)
|...+...+...|..+.+.|....+..... ....++.....|...+.+.+......+.|+||||+|+..++.++..|.
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPtnkp~~R~d--~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~ 465 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPTNRSMIRKD--EADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLK 465 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCCCCCcceec--CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 333333333333333333332222211111 122344555677778888887777888999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC--------------------------------
Q 009494 403 VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG-------------------------------- 450 (533)
Q Consensus 403 ~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~-------------------------------- 450 (533)
..|+++..+|+.+.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 466 -~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 466 -KENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred -HcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 89999999999999999999999999995 9999999999999862
Q ss_pred ------ccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 451 ------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 451 ------v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
-=+||--..+.|-.--.|-.||+||.|.+|.+-.|++-.|.
T Consensus 543 ~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 13677778888988899999999999999999999987663
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=5.2e-31 Score=272.86 Aligned_cols=292 Identities=21% Similarity=0.247 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALS----GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+++|.+++..+.. ++..++++|||+|||.+++..+-. + +..+|||+||++|+.||.+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~------------~~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L------------KRSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h------------cCCEEEEECcHHHHHHHHHHHH
Confidence 3689999999999998 899999999999999986654432 2 2239999999999999987766
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHh
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~ 311 (533)
.+.... .....+||...... . ..|+|+|.+.+........+...++++||+||||++.... +..+...
T Consensus 102 ~~~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~ 169 (442)
T COG1061 102 KFLLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILEL 169 (442)
T ss_pred HhcCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHh
Confidence 654321 23444454433320 1 3699999999866422223334479999999999987544 3455555
Q ss_pred CCCCc-EEEEeccCCHHHH---HHHHhhCCCeEEEEeCCCCC----CCcCceEEEEEe----------------------
Q 009494 312 ISLPQ-ILMYSATISQEVE---KMSSSISKDIVVVSVGKPNM----PNKAVKQLAIWV---------------------- 361 (533)
Q Consensus 312 ~~~~q-~l~~SAT~~~~~~---~l~~~~~~~~~~i~~~~~~~----~~~~v~~~~~~~---------------------- 361 (533)
+.... ++++|||++..-. .....+.. ++......... ...+.......+
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 55556 9999999763221 11111111 12222211100 000011111111
Q ss_pred ----------------cchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHH
Q 009494 362 ----------------ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 362 ----------------~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~ 425 (533)
....+...+...+.... .+.+++||+.+..++..++..+. ..+. +..+.+..+..+|..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~-~~~~-~~~it~~t~~~eR~~il 325 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFL-APGI-VEAITGETPKEEREAIL 325 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhc-CCCc-eEEEECCCCHHHHHHHH
Confidence 11112222233333333 56799999999999999999998 5555 88899999999999999
Q ss_pred HHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCC
Q 009494 426 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 426 ~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~ 476 (533)
+.|+.|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|.
T Consensus 326 ~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 326 ERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999999999993
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=2.7e-30 Score=288.47 Aligned_cols=303 Identities=17% Similarity=0.178 Sum_probs=214.4
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCCCeEE
Q 009494 164 QAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFKTA 242 (533)
Q Consensus 164 ~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~~~~ 242 (533)
+.+..+..++.++++|+||||||+ .+|.+..-.. .+...++++..|+|--|..+...+. .++...|-.+.
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 455666677788999999999999 5676543211 1223467777899888777665443 33333332332
Q ss_pred EEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch-hhhhcCcHHH-HHHHHHhCCCCcEEEE
Q 009494 243 LVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRDQ-VMQIFRAISLPQILMY 320 (533)
Q Consensus 243 ~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah-~~~~~~~~~~-~~~i~~~~~~~q~l~~ 320 (533)
........ ...++.|.++|+|+|++.+.... .+.++++|||||+| ++++.+|.-. +..++...++.++|+|
T Consensus 145 Y~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlm 217 (1283)
T TIGR01967 145 YKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIIT 217 (1283)
T ss_pred eEEcCCcc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEE
Confidence 22222221 23457899999999999887655 48999999999999 6888777654 6667766688999999
Q ss_pred eccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc------hhHHHHHHHHHhhcc-CCCCCeEEEEcchhh
Q 009494 321 SATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES------NKKKQKLFDILMSKQ-HFTPPAVVYVGSRLG 393 (533)
Q Consensus 321 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~------~~k~~~l~~~l~~~~-~~~~~~LVf~~s~~~ 393 (533)
|||+.. +.+.+.+...+++ .+..... .+...+..... ..+...+...+.... ...+.+|||+++..+
T Consensus 218 SATld~--~~fa~~F~~apvI-~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPII-EVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCEE-EECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 999975 5677777666653 3332222 23333322211 122233444443321 234789999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC-----------
Q 009494 394 ADLLSNAISVTT--GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP----------- 460 (533)
Q Consensus 394 a~~l~~~L~~~~--~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p----------- 460 (533)
++.+++.|.+.. +..+..+||++++.+|..+++.+ +..+|||||+++++|||||++++||+++.+
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999998432 35688999999999999986653 346899999999999999999999998843
Q ss_pred -------CCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 461 -------NSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 461 -------~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
.|.+.|.||.||+||.| .|.|+.++++.+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36789999999999997 9999999987654
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.8e-30 Score=273.17 Aligned_cols=148 Identities=19% Similarity=0.319 Sum_probs=131.4
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCC
Q 009494 138 SSCSLSQKLLQNIE-----AAGYDMP---TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 138 ~~~~l~~~l~~~l~-----~~g~~~p---~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
+.+.+..++...+. ..||..| +|+|.|+++.+..++++++.++||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 45678888888887 5799999 99999999999999999999999999999999999987753
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCCCCCC-----
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHDIELD----- 283 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~~~l~----- 283 (533)
+..++||+||++||.|..+++..+...+++++.+++||.+...+...+ +++|+|+||++| .++++.+.+.++
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~v 212 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQV 212 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhh
Confidence 123899999999999999999999999999999999999988876554 599999999999 999998766655
Q ss_pred --CeeEEEEecchhhh
Q 009494 284 --DIRMFVLDEVDCML 297 (533)
Q Consensus 284 --~~~~vVvDEah~~~ 297 (533)
.+.++||||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 56899999999987
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.2e-30 Score=240.75 Aligned_cols=201 Identities=39% Similarity=0.714 Sum_probs=182.2
Q ss_pred cccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE
Q 009494 137 FSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 137 f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
|+++++++.+.+.+.+.|+..|+++|.++++.+..++++++.+|||+|||++|++|++.++...+ ...+++++|+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----ccCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999877632 1357899999
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhh
Q 009494 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~ 296 (533)
+|+++|+.|+...++.+....++.+..+.|+....+....+..+++|+|+||++|.+++.+....+.+++++|+||+|.+
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999999887788999999998887776666668999999999999999988888999999999999999
Q ss_pred hhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEE
Q 009494 297 LQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVV 342 (533)
Q Consensus 297 ~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i 342 (533)
.+.++...+..++..+. ..+++++|||+++.+..+...++.+++.+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 98889999999888885 68999999999999999998888888765
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.3e-29 Score=265.61 Aligned_cols=289 Identities=17% Similarity=0.232 Sum_probs=204.3
Q ss_pred EEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH--
Q 009494 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ-- 253 (533)
Q Consensus 176 lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-- 253 (533)
|+.|+||||||.+|+..+... +. .+.++||++|+++|+.|+.+.+++.+ +..+..++++.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LA---------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HH---------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH
Confidence 478999999999986654433 32 35679999999999999999988654 4567788887765543
Q ss_pred -HHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-----c-HHHHHHHHHhCCCCcEEEEeccCC
Q 009494 254 -VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-----F-RDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 254 -~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-----~-~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
+..+.. ..+|||+|+..+. ..+.++++|||||+|....++ | ...+..........++|++|||++
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 333333 4799999998773 357889999999999876332 1 133455566668899999999987
Q ss_pred HHHHHHHHhhCCCeEEEEeCCC--CCCCcCceEEEEEecchh----HHHHHHHHHhhccCCCCCeEEEEcchhh------
Q 009494 326 QEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESNK----KKQKLFDILMSKQHFTPPAVVYVGSRLG------ 393 (533)
Q Consensus 326 ~~~~~l~~~~~~~~~~i~~~~~--~~~~~~v~~~~~~~~~~~----k~~~l~~~l~~~~~~~~~~LVf~~s~~~------ 393 (533)
.+....+.. .....+..... ....+.+. +....... -...+++.+.+....++++|||+|++.-
T Consensus 141 les~~~~~~--g~~~~~~l~~r~~~~~~p~v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C 216 (505)
T TIGR00595 141 LESYHNAKQ--KAYRLLVLTRRVSGRKPPEVK--LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLC 216 (505)
T ss_pred HHHHHHHhc--CCeEEeechhhhcCCCCCeEE--EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEh
Confidence 554433322 22222222211 11122211 11111111 1245677777776778899999887532
Q ss_pred ------------------------------------------------------HHHHHHHHHhhc-CCeEEEEeCCCCH
Q 009494 394 ------------------------------------------------------ADLLSNAISVTT-GMKALSIHGEKPM 418 (533)
Q Consensus 394 ------------------------------------------------------a~~l~~~L~~~~-~~~~~~~h~~~~~ 418 (533)
++.+++.|.+.. +.++..+|+++++
T Consensus 217 ~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~ 296 (505)
T TIGR00595 217 RSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296 (505)
T ss_pred hhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccccc
Confidence 577888887443 6789999999987
Q ss_pred HHH--HHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC------------CHhHHHHhhccccCCCCccEEEE
Q 009494 419 KER--REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------SIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 419 ~er--~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~------------s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
..+ +.+++.|++|+.+|||+|+++++|+|+|++++|+.+|... ....|.|++||+||.+..|.+++
T Consensus 297 ~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred CccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 665 8999999999999999999999999999999986544321 24678999999999999999997
Q ss_pred EecC
Q 009494 485 FVNE 488 (533)
Q Consensus 485 ~~~~ 488 (533)
....
T Consensus 377 qt~~ 380 (505)
T TIGR00595 377 QTYN 380 (505)
T ss_pred EeCC
Confidence 6643
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.1e-29 Score=268.13 Aligned_cols=317 Identities=19% Similarity=0.218 Sum_probs=246.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+.-.+..|+ |+.+.||+|||+++.+|++...+. +..+-|++||+.||.|.++++..+
T Consensus 79 g~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 54 78899988887776664 899999999999999999755443 234779999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhhhc-------
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQR------- 299 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~~~------- 299 (533)
...+|+++.++.|+.+...+...+ .++|+++||++| .++++.+- ..+..+.++||||||.|+=.
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 999999999999998877765553 489999999999 99997653 24678999999999998610
Q ss_pred ---------CcHHHHHHHHHhCC---------C-----------------------------------------------
Q 009494 300 ---------GFRDQVMQIFRAIS---------L----------------------------------------------- 314 (533)
Q Consensus 300 ---------~~~~~~~~i~~~~~---------~----------------------------------------------- 314 (533)
.....+..+...+. .
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 01111122222110 0
Q ss_pred --------------------------------------------------------------CcEEEEeccCCHHHHHHH
Q 009494 315 --------------------------------------------------------------PQILMYSATISQEVEKMS 332 (533)
Q Consensus 315 --------------------------------------------------------------~q~l~~SAT~~~~~~~l~ 332 (533)
.++.+||+|...+...+.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 145566666666666666
Q ss_pred HhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEE
Q 009494 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~ 412 (533)
..+..+.+.|....+...... ...++.....|...+.+.+......+.|+||||+|+..++.+++.|. ..|+++..+
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~--~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~-~~gi~~~vL 460 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDH--PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLK-KAGIPHNVL 460 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeC--CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCceEec
Confidence 666666555544333222111 22344556677888888887766678899999999999999999998 789999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc--------------------------------------cEE
Q 009494 413 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV--------------------------------------RQV 454 (533)
Q Consensus 413 h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v--------------------------------------~~V 454 (533)
|+. +.+|+..+..|..+...|+|||++++||+||+-- =+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 7799999999999999999999999999998742 368
Q ss_pred EEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 455 IIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 455 I~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
|-...|.|-.--.|-.||+||.|.+|.+-.|++-.|
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 888889999999999999999999999999998766
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.6e-29 Score=273.38 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=204.0
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+|+|+|..+.........+++.||||+|||.++++++...+.. +...+++|..||+++++|+++.++++.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 348999999886554456678999999999999987765543221 345679999999999999999887643
Q ss_pred CCC--CCeEEEEEcCcchHHHHH--------------------HHH----c---CCceeecCHHHHHHHHHc-CCCCCCC
Q 009494 235 KGL--PFKTALVVGGDAMARQVY--------------------RIQ----Q---GVELIVGTPGRLIDLLMK-HDIELDD 284 (533)
Q Consensus 235 ~~~--~~~~~~~~gg~~~~~~~~--------------------~l~----~---~~~Iii~Tp~~l~~~l~~-~~~~l~~ 284 (533)
... ...+.+.+|......... ... + -.+|+|||+.+++.-... +...+..
T Consensus 356 ~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~ 435 (878)
T PRK09694 356 SKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRG 435 (878)
T ss_pred HHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHH
Confidence 321 234566665443211100 111 1 168999999988644332 2222222
Q ss_pred e----eEEEEecchhhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCHHHHH-HHHhhCCC-eEE-------EEe-CC--
Q 009494 285 I----RMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEK-MSSSISKD-IVV-------VSV-GK-- 346 (533)
Q Consensus 285 ~----~~vVvDEah~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~-l~~~~~~~-~~~-------i~~-~~-- 346 (533)
+ ++|||||+|.+- .-....+..+++.+ ....+|+||||+|..... +...+... ... ++. ..
T Consensus 436 ~~La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 436 FGLGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred HhhccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 2 489999999763 22334455555544 456799999999987754 33332211 000 000 00
Q ss_pred -CCC--C------CcCceEEEEEe--cchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc--CCeEEEEe
Q 009494 347 -PNM--P------NKAVKQLAIWV--ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--GMKALSIH 413 (533)
Q Consensus 347 -~~~--~------~~~v~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~--~~~~~~~h 413 (533)
... . .......+... ........+++.+.+....++++|||||++..|+.+++.|++.. ..++..+|
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 000 0 00000111111 11112234455554444557789999999999999999998433 25789999
Q ss_pred CCCCHHHH----HHHHHHH-hcCC---CcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCC
Q 009494 414 GEKPMKER----REIMRSF-LVGE---VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD 478 (533)
Q Consensus 414 ~~~~~~er----~~~~~~f-~~g~---~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~ 478 (533)
|.++..+| .++++.| ++|+ ..|||||+++++|+|+ +++++|....| ++.++||+||++|.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999 4567778 5665 3699999999999999 58999998888 8999999999999976
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.6e-29 Score=267.67 Aligned_cols=317 Identities=19% Similarity=0.256 Sum_probs=239.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+.-.+..|+ |+.+.||+|||+++.+|++..++. |..+-|++||.-||.|-++++..+
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------GKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc----------CCCeEEEeccHHHHHhhHHHHHHH
Confidence 54 78899998877776766 999999999999999999887754 667999999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhh-c------
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ-R------ 299 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~-~------ 299 (533)
...+|+++.++.++.+.... +-.-.++|+++|...| .++|+.+ ......+.+.||||+|.++= .
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r--~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEK--RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHH--HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 99999999999887665553 2234589999999887 4555543 12245688999999998761 0
Q ss_pred ------C---cHHHHHHHHHhCC--------------------CC-----------------------------------
Q 009494 300 ------G---FRDQVMQIFRAIS--------------------LP----------------------------------- 315 (533)
Q Consensus 300 ------~---~~~~~~~i~~~~~--------------------~~----------------------------------- 315 (533)
+ ....+..+...+. ..
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 0 1111111111110 00
Q ss_pred --------------------------------------------------------------------------cEEEEe
Q 009494 316 --------------------------------------------------------------------------QILMYS 321 (533)
Q Consensus 316 --------------------------------------------------------------------------q~l~~S 321 (533)
++.+||
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 344455
Q ss_pred ccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHH
Q 009494 322 ATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAI 401 (533)
Q Consensus 322 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L 401 (533)
+|...+...+.+.+..+.+.+....+..... .....+.....|...+.+.+......+.|+||||+|+..++.++..|
T Consensus 383 GTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d--~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 383 GTAKTEEEEFREIYNMEVITIPTNRPVIRKD--SPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred CCCHHHHHHHHHHhCCCEEEcCCCCCeeeee--CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 5554444445444544444433322211111 11233445566777888888776677889999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---Ccc-----EEEEcCCCCCHhHHHHhhccc
Q 009494 402 SVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---GVR-----QVIIFDMPNSIKEYVHQIGRA 473 (533)
Q Consensus 402 ~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~---~v~-----~VI~~d~p~s~~~y~qriGR~ 473 (533)
. ..|++...+|+++.+.++..+.+.++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|+.||+
T Consensus 461 ~-~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 461 D-EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred H-HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 8 78999999999999888888888888887 999999999999995 888 999999999999999999999
Q ss_pred cCCCCccEEEEEecCcC
Q 009494 474 SQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 474 gR~g~~g~~~~~~~~~~ 490 (533)
||.|.+|.+..|++.+|
T Consensus 538 GRqG~~G~s~~~~sleD 554 (796)
T PRK12906 538 GRQGDPGSSRFYLSLED 554 (796)
T ss_pred ccCCCCcceEEEEeccc
Confidence 99999999999999876
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.7e-28 Score=263.98 Aligned_cols=382 Identities=19% Similarity=0.230 Sum_probs=290.5
Q ss_pred ccccCCcCcCCCCCCHHHHHHHHHhcCceeecC-------CCCCcccCcccCCCCHHHHHHHHHc-CCCCCCHHHHHHHH
Q 009494 96 YVRESDENSGFQSLTIGQTDSLRKRLEINVKGD-------AVPAPILSFSSCSLSQKLLQNIEAA-GYDMPTPVQMQAIP 167 (533)
Q Consensus 96 y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~p~~~~~f~~~~l~~~l~~~l~~~-g~~~p~p~Q~~~i~ 167 (533)
|...+++++.+.+|....|.+.+++..-.+..- .--+....=..++.+..+...+... +| .-||-|..||.
T Consensus 526 Y~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~ 604 (1139)
T COG1197 526 YVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPY-EETPDQLKAIE 604 (1139)
T ss_pred ccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCC-cCCHHHHHHHH
Confidence 666677778899999999999888765433210 0001111111244566777777654 66 67999999999
Q ss_pred HHhC----C--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeE
Q 009494 168 SALS----G--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 168 ~~~~----~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
.+.. + .|-|+||.-|.|||-+++=+++..++ .|+.|.|++||--||+|.++.|+.-+.++++++
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I 674 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRI 674 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeE
Confidence 9883 3 37899999999999999888887664 478899999999999999999999999999999
Q ss_pred EEEEcCcchHHHHHHH---HcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcE
Q 009494 242 ALVVGGDAMARQVYRI---QQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQI 317 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l---~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~ 317 (533)
..+..-.+..++...+ ..| .+|||+| +-+-+..+.+++++++||||-|+..=. +=+.+.+.-.+.-+
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFGVk----~KEkLK~Lr~~VDv 745 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFGVK----HKEKLKELRANVDV 745 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcCcc----HHHHHHHHhccCcE
Confidence 9998877766655443 334 9999999 555667788999999999999996422 22233333367889
Q ss_pred EEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHH
Q 009494 318 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLL 397 (533)
Q Consensus 318 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l 397 (533)
+-+|||+-+..-.++-....+..+|.....+ .-.+..++...+. ..+.+.+.+....++++...+|..+..+.+
T Consensus 746 LTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~----~~ireAI~REl~RgGQvfYv~NrV~~Ie~~ 819 (1139)
T COG1197 746 LTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDD----LLIREAILRELLRGGQVFYVHNRVESIEKK 819 (1139)
T ss_pred EEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCCh----HHHHHHHHHHHhcCCEEEEEecchhhHHHH
Confidence 9999998777778877777777666543332 2234434333332 344455555556788999999999999999
Q ss_pred HHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC-CHhHHHHhhccccC
Q 009494 398 SNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQ 475 (533)
Q Consensus 398 ~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~-s~~~y~qriGR~gR 475 (533)
++.|+... ..++.+.||.|+..+-+.++..|.+|+.+|||||.+++.|||||+++++|+-+... -.++.-|.-||+||
T Consensus 820 ~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGR 899 (1139)
T COG1197 820 AERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR 899 (1139)
T ss_pred HHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCC
Confidence 99998432 45788999999999999999999999999999999999999999999999876654 67888999999999
Q ss_pred CCCccEEEEEecCcC--HHHHHHHHHHHHH
Q 009494 476 MGDEGTAIVFVNEEN--KNLFQELVDILKS 503 (533)
Q Consensus 476 ~g~~g~~~~~~~~~~--~~~~~~l~~~l~~ 503 (533)
.++.++|+.++.+.. -+...+-++.+++
T Consensus 900 S~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 900 SNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred ccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 999999999998643 3555555666665
No 94
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=258.47 Aligned_cols=346 Identities=20% Similarity=0.205 Sum_probs=253.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHH--HHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAI--PSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i--~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
.|...+++....-..+..|...++.||.+++ +.++.+++.+..+||+.|||+++.+.++..++.. +..+
T Consensus 202 ~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---------rr~~ 272 (1008)
T KOG0950|consen 202 GFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---------RRNV 272 (1008)
T ss_pred hhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---------hhce
Confidence 3444444444445556679999999999987 5677899999999999999999999999887753 3458
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc--CCCCCCCeeEEEEe
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLD 291 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~--~~~~l~~~~~vVvD 291 (533)
+.+.|..+.+..-...+..+...+|+.+...+|+.+.... .+.-++.|||.++-..+.++ ..-.+..+++||||
T Consensus 273 llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVd 348 (1008)
T KOG0950|consen 273 LLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVD 348 (1008)
T ss_pred eEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEe
Confidence 9999998888877778888888889999888876655442 23468999999987555543 22346789999999
Q ss_pred cchhhhhcCcHHHHHHHHHhC------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCc--CceEEEEEecc
Q 009494 292 EVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNK--AVKQLAIWVES 363 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~--~v~~~~~~~~~ 363 (533)
|.|.+.+.+.+..++.++.++ ...|+|+||||+|+ +..+..++. ..+...-..+..... .+-......
T Consensus 349 Elhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~-- 424 (1008)
T KOG0950|consen 349 ELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN-NSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYES-- 424 (1008)
T ss_pred eeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC-hHHHHHHhh-hhheecccCcccchhccCCCcccccc--
Confidence 999999999988888888877 34579999999998 444544443 332222111110000 000001111
Q ss_pred hhHH-------------------HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHh---------------------
Q 009494 364 NKKK-------------------QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV--------------------- 403 (533)
Q Consensus 364 ~~k~-------------------~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~--------------------- 403 (533)
.+. +.+..+..+....+.++||||+++..|+.++..+.+
T Consensus 425 -~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s 503 (1008)
T KOG0950|consen 425 -SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSIS 503 (1008)
T ss_pred -hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHH
Confidence 011 122333333334455799999999999988865531
Q ss_pred ----------------hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcC----CCCCH
Q 009494 404 ----------------TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD----MPNSI 463 (533)
Q Consensus 404 ----------------~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d----~p~s~ 463 (533)
...+.+.++|+|++.++|+.+...|++|.+.|++||++++.|+|+|..+++|-.- ...+.
T Consensus 504 ~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~ 583 (1008)
T KOG0950|consen 504 NLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTR 583 (1008)
T ss_pred hHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhh
Confidence 0123356899999999999999999999999999999999999999999888743 24578
Q ss_pred hHHHHhhccccCCCC--ccEEEEEecCcCHHHHHHHHH
Q 009494 464 KEYVHQIGRASQMGD--EGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 464 ~~y~qriGR~gR~g~--~g~~~~~~~~~~~~~~~~l~~ 499 (533)
.+|.||+|||||+|- .|.+++.+.+.+++.+..++.
T Consensus 584 ~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 584 LEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 899999999999985 499999999999877775543
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=7.1e-29 Score=258.45 Aligned_cols=308 Identities=20% Similarity=0.240 Sum_probs=228.2
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+| .|-++|++||-.+..|.+++|.|+|.+|||+++..++...- ..+.+++|.+|-++|.+|-++.|+.
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq----------~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ----------KHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH----------hhccceEecchhhhhccchHHHHHH
Confidence 355 78999999999999999999999999999999887765432 3467799999999999999999987
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
-+...| +++|.... ...+..+|+|-+.|.+++.++.--++++.+||+||+|.+.|...+..++.++-.+
T Consensus 363 tF~Dvg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred hccccc----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 665544 55565433 3457899999999999999988778999999999999999887777777777666
Q ss_pred -CCCcEEEEeccCCHHHHHHHHhhC----CCeEEEEeCCCCCCCcCceEEEEEec-------------------------
Q 009494 313 -SLPQILMYSATISQEVEKMSSSIS----KDIVVVSVGKPNMPNKAVKQLAIWVE------------------------- 362 (533)
Q Consensus 313 -~~~q~l~~SAT~~~~~~~l~~~~~----~~~~~i~~~~~~~~~~~v~~~~~~~~------------------------- 362 (533)
...++|++|||.|+.. .++.|.. +...+++......+ +.+++ |..
T Consensus 432 P~HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVP---LEh~l-~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVP---LEHYL-YTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred cccceEEEEeccCCChH-HHHHHhhhccCceEEEEecCCCccc---eEEEE-Eeccceehhhcccchhhhhcchhhhhhh
Confidence 4679999999999854 4555543 22233332121111 11111 100
Q ss_pred ----------------------------------------chhHH-HHHHHHHhhccC-CCCCeEEEEcchhhHHHHHHH
Q 009494 363 ----------------------------------------SNKKK-QKLFDILMSKQH-FTPPAVVYVGSRLGADLLSNA 400 (533)
Q Consensus 363 ----------------------------------------~~~k~-~~l~~~l~~~~~-~~~~~LVf~~s~~~a~~l~~~ 400 (533)
...++ ...++++..... .--|++|||.|++.|+..+++
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 00000 123333333221 224899999999999999999
Q ss_pred HHhhc---------------------------------------CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009494 401 ISVTT---------------------------------------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 441 (533)
Q Consensus 401 L~~~~---------------------------------------~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~ 441 (533)
|. .. .-.+.++|||+-+--++-+.-.|..|-++||+||.+
T Consensus 587 L~-~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATET 665 (1248)
T KOG0947|consen 587 LT-NLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATET 665 (1248)
T ss_pred Hh-ccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhh
Confidence 86 11 112458999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCC---------CCHhHHHHhhccccCCCC--ccEEEEEecCc
Q 009494 442 LGRGVELLGVRQVIIFDMP---------NSIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~d~p---------~s~~~y~qriGR~gR~g~--~g~~~~~~~~~ 489 (533)
+++|+|+|.-.+|+. .+- -.+.+|.||+|||||.|- .|+++++....
T Consensus 666 FAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 666 FAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999996555554 221 268899999999999985 58888887654
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-26 Score=218.04 Aligned_cols=307 Identities=20% Similarity=0.268 Sum_probs=227.1
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+++|.|+.+-..+. +.++.|+.|-||+|||.+ +.+.+...++ .|.++.+.+|+...+..++..++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHH
Confidence 67899988776655 678999999999999985 5666666553 578899999999999988888887
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
.+.+ ..+.+++|+..... + ..++|+|...|+++.. .++++||||+|..--.. ...+...++.-
T Consensus 167 aF~~--~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~a 229 (441)
T COG4098 167 AFSN--CDIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKA 229 (441)
T ss_pred hhcc--CCeeeEecCCchhc------c-ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHh
Confidence 6553 56788888765443 2 6899999999877653 57789999999764222 22333333222
Q ss_pred --CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHH-------HHHHHHHhhccCCCCC
Q 009494 313 --SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-------QKLFDILMSKQHFTPP 383 (533)
Q Consensus 313 --~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~-------~~l~~~l~~~~~~~~~ 383 (533)
....+|.+|||++++.+.-.......++.+.......+.+. .-+.|...-.|+ ..|...+......+.|
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpv--Pkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPV--PKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCC--CceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 56679999999998877655544444444443333333322 334555443333 2677788877788899
Q ss_pred eEEEEcchhhHHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC--
Q 009494 384 AVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-- 460 (533)
Q Consensus 384 ~LVf~~s~~~a~~l~~~L~~~~~~-~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p-- 460 (533)
+|||+++....+.++..|++.... .+..+|+... .|.+.++.||+|++.+||+|.+++||+.+|++++.+.-.--
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999644443 4578888754 78999999999999999999999999999999997765433
Q ss_pred CCHhHHHHhhccccCCCC--ccEEEEEecCcCHHHH
Q 009494 461 NSIKEYVHQIGRASQMGD--EGTAIVFVNEENKNLF 494 (533)
Q Consensus 461 ~s~~~y~qriGR~gR~g~--~g~~~~~~~~~~~~~~ 494 (533)
.+-+.++|.+||+||.-. .|.++.|..-..+.+.
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 578899999999999754 4888777766554433
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.7e-27 Score=252.63 Aligned_cols=318 Identities=18% Similarity=0.203 Sum_probs=237.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+--.+..| -|+.++||.|||++|.+|++..++. +..+.||+|++.||.|..+++..+
T Consensus 80 gm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 80 EM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 44 6778887665555444 5899999999999999999887654 444999999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC-CCCC-----CCeeEEEEecchhhhhcC------
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH-DIEL-----DDIRMFVLDEVDCMLQRG------ 300 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~-~~~l-----~~~~~vVvDEah~~~~~~------ 300 (533)
...+|+++.++.++.+... ..-.-+++|+++||+.| .++|+.+ .+.. ..+.++||||+|.++-..
T Consensus 147 ~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 9999999999999877643 22223689999999999 8988876 3333 779999999999876211
Q ss_pred ----------cHHHHHHHHHhCC--------------------CC-----------------------------------
Q 009494 301 ----------FRDQVMQIFRAIS--------------------LP----------------------------------- 315 (533)
Q Consensus 301 ----------~~~~~~~i~~~~~--------------------~~----------------------------------- 315 (533)
....+..+...+. ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 1111111111110 01
Q ss_pred --------------------------------------------------------------------------------
Q 009494 316 -------------------------------------------------------------------------------- 315 (533)
Q Consensus 316 -------------------------------------------------------------------------------- 315 (533)
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence
Q ss_pred -cEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhH
Q 009494 316 -QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGA 394 (533)
Q Consensus 316 -q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a 394 (533)
++.+||+|...+...+...+..+.+.|....+...... ...++.....|...+.+-+......+.|+||||+|...+
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~--~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDM--ADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeC--CCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 23334444443334444444444433333222211111 112344556777788888877777889999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC------------------------
Q 009494 395 DLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG------------------------ 450 (533)
Q Consensus 395 ~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~------------------------ 450 (533)
+.++..|. ..++++..+|+++++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 463 e~ls~~L~-~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 463 ELLARLMV-KEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHH-HCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999998 88999999999999999999999999999 9999999999999862
Q ss_pred -------------ccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 451 -------------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 451 -------------v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
-=+||-...+.|-.--.|-.||+||.|.+|.+..|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 23688888899999999999999999999999999987764
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=5.7e-27 Score=263.19 Aligned_cols=310 Identities=13% Similarity=0.161 Sum_probs=199.8
Q ss_pred CCCCHHHHHHHHHHh----C-CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSAL----S-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~----~-~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
..++++|.+|+..+. . .++++++++||||||.+++ .++.+++.. ....++|||+|+++|+.|+.+.|
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~-------~~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA-------KRFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc-------CccCeEEEEecHHHHHHHHHHHH
Confidence 358999999998876 2 4679999999999998744 344444431 33568999999999999999999
Q ss_pred HHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-----CCCCCCeeEEEEecchhhhh-------
Q 009494 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQ------- 298 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-----~~~l~~~~~vVvDEah~~~~------- 298 (533)
+.+....+.....+++....... .......|+|+|++++...+... ...+..+++||+||||+-..
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred Hhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 88743222111112221111111 11234789999999997765432 24567899999999998531
Q ss_pred --c------CcHHHHHHHHHhCCCCcEEEEeccCCHHHHH--------------HHHhhCC---CeEEEEeC--CCCCCC
Q 009494 299 --R------GFRDQVMQIFRAISLPQILMYSATISQEVEK--------------MSSSISK---DIVVVSVG--KPNMPN 351 (533)
Q Consensus 299 --~------~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~--------------l~~~~~~---~~~~i~~~--~~~~~~ 351 (533)
. .+...+..++.++. ...|+||||+...... +...++. .|+.+... ......
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 0 12467788888764 5789999998643211 1111222 12221110 000000
Q ss_pred cC---ce-------EE-EEEecc---------------hhHHHHHHHHHhhc--cCCCCCeEEEEcchhhHHHHHHHHHh
Q 009494 352 KA---VK-------QL-AIWVES---------------NKKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV 403 (533)
Q Consensus 352 ~~---v~-------~~-~~~~~~---------------~~k~~~l~~~l~~~--~~~~~~~LVf~~s~~~a~~l~~~L~~ 403 (533)
.. +. .. ....+. ......+.+.+... ....+++||||.++.+|+.+++.|.+
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00 00 00 000000 00011111212111 11236999999999999999988864
Q ss_pred hc-----CC---eEEEEeCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhcccc
Q 009494 404 TT-----GM---KALSIHGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS 474 (533)
Q Consensus 404 ~~-----~~---~~~~~h~~~~~~er~~~~~~f~~g~~-~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~g 474 (533)
.. ++ .+..+||+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 21 22 3556899886 57789999999987 58999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009494 475 QMGD 478 (533)
Q Consensus 475 R~g~ 478 (533)
|...
T Consensus 799 R~~~ 802 (1123)
T PRK11448 799 RLCP 802 (1123)
T ss_pred cCCc
Confidence 9744
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=3e-27 Score=255.87 Aligned_cols=314 Identities=23% Similarity=0.241 Sum_probs=228.6
Q ss_pred HHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 151 EAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 151 ~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
...|| .|.++|++++..+..|.+++++||||||||+++..++...+.+ +.+++|.+|.++|.+|.+..+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----------~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----------GQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----------CCceEeccchhhhhhhHHHHH
Confidence 44566 6889999999999999999999999999999988887766543 555999999999999999988
Q ss_pred HHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHH
Q 009494 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 310 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~ 310 (533)
........-.+.++.|... +..++.++|+|-+.|.+++.++...+..+..||+||+|.|.+...+..++.++-
T Consensus 183 ~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 183 LAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred HHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHH
Confidence 7554432112334444432 234688999999999999999988899999999999999999988888888888
Q ss_pred hCCCC-cEEEEeccCCHHHHHHHHhhC---CCe-EEEEeCCCCCCCcCceEEEE-------EecchhH------------
Q 009494 311 AISLP-QILMYSATISQEVEKMSSSIS---KDI-VVVSVGKPNMPNKAVKQLAI-------WVESNKK------------ 366 (533)
Q Consensus 311 ~~~~~-q~l~~SAT~~~~~~~l~~~~~---~~~-~~i~~~~~~~~~~~v~~~~~-------~~~~~~k------------ 366 (533)
.++.. +++++|||+|+ .+.+..|+. ..+ .++...... .++.+++. .++...+
T Consensus 256 ~lP~~v~~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~Rp---vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 256 LLPDHVRFVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEHRP---VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred hcCCCCcEEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecCCC---CCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 88664 99999999998 445555543 222 233222221 11111111 1111111
Q ss_pred -----------------------------------HHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHh--------
Q 009494 367 -----------------------------------KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV-------- 403 (533)
Q Consensus 367 -----------------------------------~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~-------- 403 (533)
...++..+.. ...-|+++|+-++..|+..+..+..
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 0011111111 1234899999999999888776640
Q ss_pred --h-----------------cCCe-------------EEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 404 --T-----------------TGMK-------------ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 404 --~-----------------~~~~-------------~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
. .+++ ..++|++|-+..|..+...|..|-++|++||.+++.|+|+|.-
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 0 0121 2379999999999999999999999999999999999999965
Q ss_pred cEEEE----cC----CCCCHhHHHHhhccccCCCCc--cEEEEEecC
Q 009494 452 RQVII----FD----MPNSIKEYVHQIGRASQMGDE--GTAIVFVNE 488 (533)
Q Consensus 452 ~~VI~----~d----~p~s~~~y~qriGR~gR~g~~--g~~~~~~~~ 488 (533)
.+|+- +| ..-+..+|.|+.|||||.|.. |.+++.-.+
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 55442 22 234789999999999999964 888887443
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5e-28 Score=246.45 Aligned_cols=309 Identities=21% Similarity=0.215 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.+-|+|.++|..+-.+.+++|+|.|.+|||.++..++...+.. +.++++.+|-++|.+|-++++..-++.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 6789999999999999999999999999999998888777643 677999999999999999988755444
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCC
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~ 315 (533)
. .+.+|..+.. ..+.-+|+|.+.|..++.++.--+..+..||+||+|.|-|...+-.++.-+-.+ ...
T Consensus 199 V----GLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 V----GLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred c----ceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 3 3444443332 346789999999999999988889999999999999998876554444333333 567
Q ss_pred cEEEEeccCCHHHHHHHHhhC---CCeEEEEeCCCCCCCcCceEEEE---------Eecchh-----HHHHHHHHHhhc-
Q 009494 316 QILMYSATISQEVEKMSSSIS---KDIVVVSVGKPNMPNKAVKQLAI---------WVESNK-----KKQKLFDILMSK- 377 (533)
Q Consensus 316 q~l~~SAT~~~~~~~l~~~~~---~~~~~i~~~~~~~~~~~v~~~~~---------~~~~~~-----k~~~l~~~l~~~- 377 (533)
+.+++|||+|+ ..+++.|.. ..|..+.. ....+.++.+++. .++... .....+..+...
T Consensus 268 r~VFLSATiPN-A~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 268 RFVFLSATIPN-ARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred eEEEEeccCCC-HHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 89999999998 455666642 23322221 1122233333322 222221 111112222110
Q ss_pred -----------------------------------cCCCCCeEEEEcchhhHHHHHHHHHhhc-----------------
Q 009494 378 -----------------------------------QHFTPPAVVYVGSRLGADLLSNAISVTT----------------- 405 (533)
Q Consensus 378 -----------------------------------~~~~~~~LVf~~s~~~a~~l~~~L~~~~----------------- 405 (533)
.....|+|||+.|+++|+.+|-.+.+..
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 1112489999999999999987665110
Q ss_pred ---------------------CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cCCC
Q 009494 406 ---------------------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FDMP 460 (533)
Q Consensus 406 ---------------------~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d~p 460 (533)
.-.+.++|||+-+--++.+.-.|.+|-+++|+||.+++.|+|+|.-.+|+- ||--
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 112458999999999999999999999999999999999999996555443 3321
Q ss_pred ----CCHhHHHHhhccccCCCC--ccEEEEEecCc
Q 009494 461 ----NSIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 461 ----~s~~~y~qriGR~gR~g~--~g~~~~~~~~~ 489 (533)
-|.-+|+||.|||||.|- .|.+++++++.
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 267899999999999995 59999999875
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=7.4e-27 Score=257.56 Aligned_cols=315 Identities=15% Similarity=0.153 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+++|||.+++.++. .|.+.|++..+|.|||+..+ .++.++... .+....+|||||. ++..||.+++++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~------~~~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEY------RGITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHh------cCCCCCEEEEeCh-HHHHHHHHHHHH
Confidence 67899999999876 57889999999999999754 344444321 1334568999998 555889999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHH--H-HcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYR--I-QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~--l-~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~ 309 (533)
++.. +++..++|.......... + ....+|+|+|++.+..... .+.--.+++||+||||++.+. .......+
T Consensus 241 w~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskal 314 (1033)
T PLN03142 241 FCPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTM 314 (1033)
T ss_pred HCCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHH
Confidence 9854 456666664433222111 1 2357899999999865332 233346889999999998653 45566777
Q ss_pred HhCCCCcEEEEeccCCH-HHHHH---HHhh-------------------------------------------------C
Q 009494 310 RAISLPQILMYSATISQ-EVEKM---SSSI-------------------------------------------------S 336 (533)
Q Consensus 310 ~~~~~~q~l~~SAT~~~-~~~~l---~~~~-------------------------------------------------~ 336 (533)
..+.....+++|||+-. ....+ ...+ +
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 77777888999999521 11111 0000 0
Q ss_pred CCeE--EEEeCCCC--------------------CCC--------------------------cCceEEEEEecchhHHH
Q 009494 337 KDIV--VVSVGKPN--------------------MPN--------------------------KAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 337 ~~~~--~i~~~~~~--------------------~~~--------------------------~~v~~~~~~~~~~~k~~ 368 (533)
++.. .+.+.-.. ... .........+....|..
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 1000 01110000 000 00000000112234455
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC---CCcEEEEccccccc
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG---EVPVIVATGILGRG 445 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g---~~~VLvaT~~~~~G 445 (533)
.|..++......+.++|||+......+.|..+|. ..++.+..+||+++..+|..+++.|+.. ..-+|++|.+++.|
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~-~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM-YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 5556666666677899999999999999999998 7899999999999999999999999863 23578999999999
Q ss_pred CCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEe
Q 009494 446 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 446 ldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~ 486 (533)
||+..+++||+||++|++..+.|++||+.|.|+...+.++.
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999999987665544
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=4.8e-26 Score=206.66 Aligned_cols=164 Identities=31% Similarity=0.536 Sum_probs=142.9
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
||+|.++++.+.+++++++.||||+|||+++++|++..+.. ....++++++|+++|+.|..+.+..++...+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~--------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE--------GKDARVLIIVPTRALAEQQFERLRKFFSNTN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc--------CCCceEEEEeecccccccccccccccccccc
Confidence 69999999999999999999999999999999999988765 2335899999999999999999999988878
Q ss_pred CeEEEEEcCcchH-HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC---CC
Q 009494 239 FKTALVVGGDAMA-RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SL 314 (533)
Q Consensus 239 ~~~~~~~gg~~~~-~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~---~~ 314 (533)
+++..++++.... .....+..+++|+|+||++|.+.+.....++.++++||+||+|.+..+++...+..++..+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 8999999988865 4444455679999999999999999866677889999999999999988888888888887 46
Q ss_pred CcEEEEeccCCHHHHH
Q 009494 315 PQILMYSATISQEVEK 330 (533)
Q Consensus 315 ~q~l~~SAT~~~~~~~ 330 (533)
.+++++|||++..+++
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 8999999999976664
No 103
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=3e-24 Score=220.01 Aligned_cols=313 Identities=16% Similarity=0.209 Sum_probs=226.7
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.++++|.+.++++. .|-+.|+...+|-|||+. .+.++.++...+ +-....||++|...| ..|.+++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~------~~~GPfLVi~P~StL-~NW~~Ef~r 238 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK------GIPGPFLVIAPKSTL-DNWMNEFKR 238 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc------CCCCCeEEEeeHhhH-HHHHHHHHH
Confidence 68999999999977 577899999999999986 455555554422 333448999999998 459999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHH-H--HcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYR-I--QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~-l--~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~ 309 (533)
|+.. +.+++++|.......+.+ + ....+|+|+|++..+.- +..+.--.++|+||||||++.+. ...+..++
T Consensus 239 f~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~l 312 (971)
T KOG0385|consen 239 FTPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKIL 312 (971)
T ss_pred hCCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHH
Confidence 9875 577778876543332221 1 13589999999998553 23334457899999999999765 46677889
Q ss_pred HhCCCCcEEEEeccCCH-H------------------HHHHHHhh-----------------------------------
Q 009494 310 RAISLPQILMYSATISQ-E------------------VEKMSSSI----------------------------------- 335 (533)
Q Consensus 310 ~~~~~~q~l~~SAT~~~-~------------------~~~l~~~~----------------------------------- 335 (533)
+.+....-+++|+|+-. . .+.+..|+
T Consensus 313 r~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 313 REFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred HHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 99988889999999310 0 00111110
Q ss_pred ----------------------------------------------------CCCeEEEEeCCCCCCCcCceEEEEEecc
Q 009494 336 ----------------------------------------------------SKDIVVVSVGKPNMPNKAVKQLAIWVES 363 (533)
Q Consensus 336 ----------------------------------------------------~~~~~~i~~~~~~~~~~~v~~~~~~~~~ 363 (533)
...|..+....+..+.. ..--.+..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt---tdehLv~n 469 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT---TDEHLVTN 469 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC---cchHHHhc
Confidence 01111000000000000 00011223
Q ss_pred hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC---CcEEEEcc
Q 009494 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE---VPVIVATG 440 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~---~~VLvaT~ 440 (533)
..|...|-.+|......+++||||.......+.|..+.. ..++....+.|.++.++|...++.|.... .-+|++|.
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~-~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM-LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH-hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 334444555566666778899999999999999999987 88999999999999999999999999854 33689999
Q ss_pred cccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 441 ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 441 ~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
+.+-|||+..+++||.||..|++..-.|.+-||+|.|+...+.+|--
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RL 595 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRL 595 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEE
Confidence 99999999999999999999999999999999999999876665543
No 104
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.8e-23 Score=222.85 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=121.2
Q ss_pred EecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009494 360 WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 360 ~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT 439 (533)
+.....|...+.+.+......+.|+||||+|+..++.|+..|. ..|+++..+|+ .+.+|+..+..|..+...|+|||
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~-~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLR-AKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHH-HcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3444567788888887776778899999999999999999998 88999999997 57799999999999999999999
Q ss_pred ccccccCCCC---Ccc-----EEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHH--H--HHHHHHHHHcCC
Q 009494 440 GILGRGVELL---GVR-----QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL--F--QELVDILKSSGA 506 (533)
Q Consensus 440 ~~~~~Gldi~---~v~-----~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~--~--~~l~~~l~~~~~ 506 (533)
++++||+||+ .|. +||++..|.|...|.|++||+||.|.+|.+.+|++..|.-+ + ..+.+++...|.
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 9999999999 443 45889999999999999999999999999999999876422 1 134555555443
No 105
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.9e-22 Score=197.74 Aligned_cols=194 Identities=20% Similarity=0.288 Sum_probs=147.2
Q ss_pred CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhh
Q 009494 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 314 ~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~ 393 (533)
.+|+|++|||+.+........ ..+.-.+...+... ..+..-+.....+.|+.-+......+.++||-+-+++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIRPTGLlD----P~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIRPTGLLD----PEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeecCCCCCC----CceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 469999999998744333221 11211112222222 22333344556677888777777778999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC-----CCHhHHHH
Q 009494 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-----NSIKEYVH 468 (533)
Q Consensus 394 a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p-----~s~~~y~q 468 (533)
|+.|.++|. ..|+++.++|++...-+|.+++++++.|.++|||.-+.+-+|+|+|.|.+|.++|.. .|-..++|
T Consensus 459 AEdLT~Yl~-e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 459 AEDLTEYLK-ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHH-hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999 999999999999999999999999999999999999999999999999999998854 58899999
Q ss_pred hhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCCchhhHHhHHhcCcc
Q 009494 469 QIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAVRLMTFCYILGREF 520 (533)
Q Consensus 469 riGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 520 (533)
-+|||.|. ..|.++.+.+. .-..+.+.+..+...+..+..+...|.|
T Consensus 538 tIGRAARN-~~GkvIlYAD~----iT~sM~~Ai~ET~RRR~iQ~~yN~~hgI 584 (663)
T COG0556 538 TIGRAARN-VNGKVILYADK----ITDSMQKAIDETERRREIQMAYNEEHGI 584 (663)
T ss_pred HHHHHhhc-cCCeEEEEchh----hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999994 68999999874 3345555666655555555555554444
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=9.6e-23 Score=223.52 Aligned_cols=330 Identities=19% Similarity=0.215 Sum_probs=218.2
Q ss_pred CCHHHHHHHHHHhCC---C-cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 158 PTPVQMQAIPSALSG---K-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~---~-~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+++.|..++..+... . .+++.||||+|||.+.+.+++..+... .....+++++.|++.+.+++++.++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc------ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 489999999888743 3 688999999999999998887765441 125788999999999999999999987
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHH---------------HcCCceeecCHHHHHHHHHc-CCCC---CCCeeEEEEecch
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRI---------------QQGVELIVGTPGRLIDLLMK-HDIE---LDDIRMFVLDEVD 294 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l---------------~~~~~Iii~Tp~~l~~~l~~-~~~~---l~~~~~vVvDEah 294 (533)
....+.......| .......... ..-..++++||-.+...... .... .-..+.+|+||+|
T Consensus 270 ~~~~~~~~~~~h~-~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 270 FGLFSVIGKSLHS-SSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hcccccccccccc-cccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 6543322221222 2211111100 00123555555554432111 1111 1234679999999
Q ss_pred hhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCC---CCcCceEE-EEEecchhHHH
Q 009494 295 CMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM---PNKAVKQL-AIWVESNKKKQ 368 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~~v~~~-~~~~~~~~k~~ 368 (533)
.+.+......+..++..+ ....+|++|||+|+...........+...+....... ....+.+. ...+.... ..
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~ 427 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QE 427 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hH
Confidence 887764345555555555 5789999999999998887777665544433321100 00111100 00000000 01
Q ss_pred HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh----cCCCcEEEEcccccc
Q 009494 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL----VGEVPVIVATGILGR 444 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~----~g~~~VLvaT~~~~~ 444 (533)
.+..........+.+++|.|||+..|..++..|+ ..+.++..+||.+...+|.+.++.+. .+...|+|||++++-
T Consensus 428 ~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk-~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLK-EKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred hhhhcchhhhccCCcEEEEEecHHHHHHHHHHHH-hcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 2344444455667899999999999999999998 44447999999999999999888655 467789999999999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhccccCCC--CccEEEEEecCcCHHHHHHHHH
Q 009494 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG--DEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 445 Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g--~~g~~~~~~~~~~~~~~~~l~~ 499 (533)
|+|+. .+++|-==.| ++..+||+||++|.| ..|.++++.............+
T Consensus 507 gvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 507 GVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred Eeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 99974 6666655444 999999999999999 5788888887654444433333
No 107
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.91 E-value=6.4e-23 Score=209.22 Aligned_cols=308 Identities=17% Similarity=0.222 Sum_probs=211.4
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHcCCCCC
Q 009494 161 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLPF 239 (533)
Q Consensus 161 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~~~~ 239 (533)
+-.+.+..+..++-++|.|+||||||+ .+|-+- .+..+ ....++.+.-|+|--|..+++.. .+....+|-
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL--~eaG~-----~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQYL--AEAGF-----ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHH--Hhccc-----ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 344666677788889999999999998 455332 22111 12233888889998877655533 344333333
Q ss_pred eEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh--hcCcHHHHHHHHHhCCCCcE
Q 009494 240 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML--QRGFRDQVMQIFRAISLPQI 317 (533)
Q Consensus 240 ~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~--~~~~~~~~~~i~~~~~~~q~ 317 (533)
.+.....-... ..+...|.+.|.|.|++-+.... .++.+++||+||||.=. ..-....+..++++.++.++
T Consensus 126 ~VGY~IRFed~------ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 126 EVGYTIRFEDS------TSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred eeeeEEEeccc------CCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 33222221111 11347899999999988877665 48999999999999521 11123445566666688899
Q ss_pred EEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhc--cCCCCCeEEEEcchhhHH
Q 009494 318 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 318 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~~LVf~~s~~~a~ 395 (533)
|.+|||+.. +.+...+..-++....|. .. ++...+..-......+..+..+.+. ....+-+|||.+..++.+
T Consensus 199 IimSATlda--~kfS~yF~~a~i~~i~GR-~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 199 IIMSATLDA--EKFSEYFNNAPILTIPGR-TF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred EEEeeeecH--HHHHHHhcCCceEeecCC-CC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 999999984 666666666555444333 22 2333333333333333322222221 134457999999999999
Q ss_pred HHHHHHHhhcCC-------eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC---------
Q 009494 396 LLSNAISVTTGM-------KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM--------- 459 (533)
Q Consensus 396 ~l~~~L~~~~~~-------~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~--------- 459 (533)
.+++.|.+..+. -+..+||.++.+++.++++.-..|..+|++||++++..+.|+++.+||+-++
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~ 352 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPR 352 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccc
Confidence 999988743221 2467999999999999998888899999999999999999999999998442
Q ss_pred ---------CCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 460 ---------PNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 460 ---------p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
|-|...-.||.|||||.| .|.|+-++++++.
T Consensus 353 ~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 353 TGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred cCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 558888999999999974 8999999987654
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=2.2e-21 Score=208.34 Aligned_cols=134 Identities=23% Similarity=0.371 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009494 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
..+...+++.+......+.++||||+++..++.+++.|. ..|+++..+||++++.+|..+++.|+.|++.|||||+.++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~-~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLK-ELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-hhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 345567777777776778899999999999999999998 7799999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcC-----CCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHH
Q 009494 444 RGVELLGVRQVIIFD-----MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 444 ~Gldi~~v~~VI~~d-----~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 499 (533)
+|+|+|++++||++| .|.+...|+||+||+||. ..|.+++|.+..+......+.+
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999988 799999999999999998 6899999999876554444444
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.1e-21 Score=205.17 Aligned_cols=316 Identities=19% Similarity=0.277 Sum_probs=232.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+.-.++.|+ ++.+.||+|||+++.+|++...+. |..+-|++|+.-||.|-++++..+
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~----------G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ----------GRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc----------CCCeEEEcCCHHHHHHHHHHHHHH
Confidence 54 78999999998888774 779999999999999999887654 667999999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhhc-------
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQR------- 299 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~~------- 299 (533)
...+|+++.++.++.+..+.... -.++|+++|...| .++|+.+ ......+.+.||||+|.++-.
T Consensus 143 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 99999999999887765543222 3589999999876 4444432 123466889999999987610
Q ss_pred --------CcHHHHHHHHHhCC----------------------------------------------------------
Q 009494 300 --------GFRDQVMQIFRAIS---------------------------------------------------------- 313 (533)
Q Consensus 300 --------~~~~~~~~i~~~~~---------------------------------------------------------- 313 (533)
.....+..+...+.
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 01111111111110
Q ss_pred -------------------------------------------------------------CCcEEEEeccCCHHHHHHH
Q 009494 314 -------------------------------------------------------------LPQILMYSATISQEVEKMS 332 (533)
Q Consensus 314 -------------------------------------------------------------~~q~l~~SAT~~~~~~~l~ 332 (533)
...+.+||+|...+.+.+.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 0135566666666566666
Q ss_pred HhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEE
Q 009494 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~ 412 (533)
+.|..+.+.|....+...... ....+.....|...+.+-+......+.|+||.+.|...++.++..|. ..|++...+
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~--~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~-~~gI~h~vL 457 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDE--ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLR-AAGVPAVVL 457 (764)
T ss_pred HHhCCcEEECCCCCCceeecC--CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH-hCCCcceee
Confidence 666555544443333222211 12344455667788888887777788999999999999999999998 789999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCC---------------ccEEEEcCCCCCHhHHHHhhccccCC
Q 009494 413 HGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLG---------------VRQVIIFDMPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 413 h~~~~~~er~~~~~~f~~g~~-~VLvaT~~~~~Gldi~~---------------v~~VI~~d~p~s~~~y~qriGR~gR~ 476 (533)
++.....|-..+-+ .|+. .|.|||++++||.||.- -=+||-...+.|-..-.|-.||+||.
T Consensus 458 NAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 98766544333333 3432 49999999999999872 24788888999999999999999999
Q ss_pred CCccEEEEEecCcC
Q 009494 477 GDEGTAIVFVNEEN 490 (533)
Q Consensus 477 g~~g~~~~~~~~~~ 490 (533)
|.+|.+..|++-+|
T Consensus 535 GDpGss~f~lSleD 548 (764)
T PRK12326 535 GDPGSSVFFVSLED 548 (764)
T ss_pred CCCCceeEEEEcch
Confidence 99999999998765
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.7e-22 Score=214.55 Aligned_cols=308 Identities=18% Similarity=0.221 Sum_probs=214.6
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCC
Q 009494 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLP 238 (533)
Q Consensus 160 p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~ 238 (533)
....+.+.++....-++|+|+||||||+ .+|.+. +...+ ..+..+.+.-|+|--|..+.+.+. ++....|
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~l--le~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFL--LEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHH--Hhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3445566666777889999999999998 455432 22111 345678888899977776655443 4444444
Q ss_pred CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhh-hhcCcH-HHHHHHHHhCC-CC
Q 009494 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM-LQRGFR-DQVMQIFRAIS-LP 315 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~-~~~~~~-~~~~~i~~~~~-~~ 315 (533)
-.+....-.++. ......|-++|.|.|+..+..... ++.+++||+||+|.= ++-.+. ..+..++...+ +.
T Consensus 124 ~~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 344443333322 234578999999999999887664 899999999999953 222222 23334444455 68
Q ss_pred cEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEE-ecchh-HHHHHHHHHhhc-cCCCCCeEEEEcchh
Q 009494 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW-VESNK-KKQKLFDILMSK-QHFTPPAVVYVGSRL 392 (533)
Q Consensus 316 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~-~~~~~-k~~~l~~~l~~~-~~~~~~~LVf~~s~~ 392 (533)
++|.||||+.. +++...+..-|++..-+.. . .+...+.. ..... -...+...+... ....+.+|||.+...
T Consensus 197 KiIimSATld~--~rfs~~f~~apvi~i~GR~-f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 197 KLIIMSATLDA--ERFSAYFGNAPVIEIEGRT-Y---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred eEEEEecccCH--HHHHHHcCCCCEEEecCCc-c---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 99999999986 6777777655654443332 1 22323311 11222 223333333332 234678999999999
Q ss_pred hHHHHHHHHHh-hc--CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC----------
Q 009494 393 GADLLSNAISV-TT--GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM---------- 459 (533)
Q Consensus 393 ~a~~l~~~L~~-~~--~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~---------- 459 (533)
+.+.+++.|.+ .. ...+..+||.++.+++.++++--..|+.+|++||++++.+|.||++.+||.-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999984 23 467889999999999999988777787789999999999999999999998442
Q ss_pred --------CCCHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 460 --------PNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 460 --------p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
|-|-+...||.|||||. .+|.|+-++++++
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 44778899999999997 5899999998744
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.4e-22 Score=200.48 Aligned_cols=341 Identities=19% Similarity=0.210 Sum_probs=233.1
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHH-HHHHcCCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ-AKLLGKGL 237 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~-~~~~~~~~ 237 (533)
+++-.+.+.++....-++|.|.||||||. .+|-+.+=.. -...+.++-+..|+|--|..+... +++.+..+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaG------ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAG------YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcc------cccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 56677788888888889999999999998 5665433111 113455577888999988876543 33333222
Q ss_pred CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh-hc-CcHHHHHHHHHhCCCC
Q 009494 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QR-GFRDQVMQIFRAISLP 315 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~-~~-~~~~~~~~i~~~~~~~ 315 (533)
| --+|.....+ .......-|=++|.|+|++-+.... .|..+++|||||||.-- .- -.-..+..|....++.
T Consensus 339 G----~eVGYsIRFE--dcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 339 G----HEVGYSIRFE--DCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred c----cccceEEEec--cccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 2 2222222222 1112335677999999988766543 68999999999999521 11 1234555666666899
Q ss_pred cEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhc--cCCCCCeEEEEcchhh
Q 009494 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLG 393 (533)
Q Consensus 316 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~~LVf~~s~~~ 393 (533)
.++..|||+.. +++...+..-|++...+... .+..++...++....+..+.-+.+. ....+-+|||....++
T Consensus 412 KllIsSAT~DA--ekFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATMDA--EKFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeeccccCH--HHHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 99999999985 77777777777766554432 2444444444444444443333332 2234679999999988
Q ss_pred HHHHHHHHHhh---c-----CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC------
Q 009494 394 ADLLSNAISVT---T-----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM------ 459 (533)
Q Consensus 394 a~~l~~~L~~~---~-----~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~------ 459 (533)
.+...+.|... . .+-+..+|+.++++.+..+++--..|..+|++||++++..|.|+++.+||.-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 87777766521 2 345678999999999999999888999999999999999999999999998443
Q ss_pred ------------CCCHhHHHHhhccccCCCCccEEEEEecCcCH--------------HHHHHHHHHHHHcCCchhhHHh
Q 009494 460 ------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEENK--------------NLFQELVDILKSSGAVRLMTFC 513 (533)
Q Consensus 460 ------------p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~~~~ 513 (533)
|-|-+.-.||+|||||.| +|+|+-+++.... .-+..++=.|++.| +.
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLG------I~ 638 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLG------IH 638 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcC------cc
Confidence 457777899999999986 8999999983211 12223334444433 45
Q ss_pred HHhcCccCCCCCCC
Q 009494 514 YILGREFTKSPPMD 527 (533)
Q Consensus 514 ~~l~~~~~~~~~~~ 527 (533)
+++...|.+.||-+
T Consensus 639 Dl~~FdFmDpPp~e 652 (902)
T KOG0923|consen 639 DLIHFDFLDPPPTE 652 (902)
T ss_pred hhcccccCCCCChH
Confidence 67778888888754
No 112
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.89 E-value=8.6e-22 Score=205.51 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=195.1
Q ss_pred CCCCHHHHHHHHHHh----CC-CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSAL----SG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~----~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
..|+.+|..||..+. .| +.+|++++||+|||.++ +.++.++++. +..+++|+|+-+++|+.|.+..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-------~~~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-------GWVKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-------chhheeeEEechHHHHHHHHHHH
Confidence 468999999998866 33 35999999999999874 4556666552 45678999999999999999998
Q ss_pred HHHcCCCC-CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-----CCCCCCeeEEEEecchhhhhcCcHHH
Q 009494 231 KLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 231 ~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-----~~~l~~~~~vVvDEah~~~~~~~~~~ 304 (533)
..+..... ++.+.-..+.. .++|.++|++++....... .+....+++||+||||| |....
T Consensus 236 ~~~~P~~~~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~ 301 (875)
T COG4096 236 EDFLPFGTKMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSE 301 (875)
T ss_pred HHhCCCccceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhh
Confidence 88876422 22222222221 4799999999998877654 35567799999999998 44556
Q ss_pred HHHHHHhCCCCcEEEEeccCCHHHHHHH-------------------HhhCCCeEEEEeCC----CCCCCcCc----e--
Q 009494 305 VMQIFRAISLPQILMYSATISQEVEKMS-------------------SSISKDIVVVSVGK----PNMPNKAV----K-- 355 (533)
Q Consensus 305 ~~~i~~~~~~~q~l~~SAT~~~~~~~l~-------------------~~~~~~~~~i~~~~----~~~~~~~v----~-- 355 (533)
...|+.++...++++ |||+......-- ..++.++..+.+.. .+..+... .
T Consensus 302 ~~~I~dYFdA~~~gL-TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 302 WSSILDYFDAATQGL-TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred hHHHHHHHHHHHHhh-ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 667777775544444 999765433222 22222222222211 01111100 0
Q ss_pred --------EEEEEec------chhHHHH----HHHHHhh--ccCCCCCeEEEEcchhhHHHHHHHHHhhc----CCeEEE
Q 009494 356 --------QLAIWVE------SNKKKQK----LFDILMS--KQHFTPPAVVYVGSRLGADLLSNAISVTT----GMKALS 411 (533)
Q Consensus 356 --------~~~~~~~------~~~k~~~----l~~~l~~--~~~~~~~~LVf~~s~~~a~~l~~~L~~~~----~~~~~~ 411 (533)
+.+...+ -...... +.+.+.. ....-+++||||.+..||+.+...|.+.. +--+..
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~ 460 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMK 460 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEE
Confidence 0000000 0011122 2233333 12224699999999999999999997432 233566
Q ss_pred EeCCCCHHHHHHHHHHHhc-C-CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCC
Q 009494 412 IHGEKPMKERREIMRSFLV-G-EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 412 ~h~~~~~~er~~~~~~f~~-g-~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~ 476 (533)
+.|+-.+. ...++.|.. . -.+|.|+.+++..|+|+|.+..++++..-.|...|.||+||+-|.
T Consensus 461 IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 461 ITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred Eeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 77765432 334455544 3 346889999999999999999999999999999999999999886
No 113
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=5.8e-23 Score=220.04 Aligned_cols=383 Identities=14% Similarity=0.164 Sum_probs=250.5
Q ss_pred CCCCCCCccccCccccCCcC-cCCCCCCHHHHHHHHHhcCceee---cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCC
Q 009494 84 PPERLPATDECFYVRESDEN-SGFQSLTIGQTDSLRKRLEINVK---GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPT 159 (533)
Q Consensus 84 ~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~---~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~ 159 (533)
.++.|-.|...-|.+..++. ..|...-...++.+..+-.-... +...-++...|..+...+..+. | .+++
T Consensus 299 d~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LR 372 (1373)
T KOG0384|consen 299 DPEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELR 372 (1373)
T ss_pred CceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhh
Confidence 35677788888898888874 33333344556665544321111 1111122223433333332222 2 5889
Q ss_pred HHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 160 PVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 160 p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+|.+.+++++ .+.++|+...+|.|||+. .+..+..+.... .-....|||+|...+.. |.++|..+.
T Consensus 373 dyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~------~~~gpflvvvplst~~~-W~~ef~~w~- 443 (1373)
T KOG0384|consen 373 DYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL------QIHGPFLVVVPLSTITA-WEREFETWT- 443 (1373)
T ss_pred hhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh------hccCCeEEEeehhhhHH-HHHHHHHHh-
Confidence 99999999877 789999999999999975 333444443311 12233889999987755 999999997
Q ss_pred CCCCeEEEEEcCcchHHHHHHHH----c-----CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHH
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQ----Q-----GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVM 306 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~----~-----~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~ 306 (533)
.++++++.|.....+.+.... . ..+++++|++.++.- ...+.--.+.+++|||||++.+. ...+.
T Consensus 444 --~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~--~~~l~ 517 (1373)
T KOG0384|consen 444 --DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKND--ESKLY 517 (1373)
T ss_pred --hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCch--HHHHH
Confidence 467888888766555444332 2 378999999987431 22233346789999999999754 45566
Q ss_pred HHHHhCCCCcEEEEeccCCH-HHHHHHHhh-------------------------------------------------C
Q 009494 307 QIFRAISLPQILMYSATISQ-EVEKMSSSI-------------------------------------------------S 336 (533)
Q Consensus 307 ~i~~~~~~~q~l~~SAT~~~-~~~~l~~~~-------------------------------------------------~ 336 (533)
..+..+....-+++|+|+-. .+..+...+ .
T Consensus 518 ~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 518 ESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred HHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 66777777778888999531 122211100 0
Q ss_pred CCe-EEEEe-----------------------CCCCCCCcCce-----------EEEEEecch-------------hHHH
Q 009494 337 KDI-VVVSV-----------------------GKPNMPNKAVK-----------QLAIWVESN-------------KKKQ 368 (533)
Q Consensus 337 ~~~-~~i~~-----------------------~~~~~~~~~v~-----------~~~~~~~~~-------------~k~~ 368 (533)
... .++.+ |..... ..+. +-+..-... ....
T Consensus 598 ~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~ 676 (1373)
T KOG0384|consen 598 PKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQ 676 (1373)
T ss_pred CCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHH
Confidence 000 00000 000000 0000 000000000 0111
Q ss_pred ----------HHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC---CCcE
Q 009494 369 ----------KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG---EVPV 435 (533)
Q Consensus 369 ----------~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g---~~~V 435 (533)
.|-.+|.+....+++||||.......+.|+++|. ..+++.-.+.|.+..+-|+..++.|... .+.+
T Consensus 677 ~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~-~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 677 ALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLS-LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHH-HcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 1112344455677899999999999999999999 8899999999999999999999999874 5668
Q ss_pred EEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEE--EEEecCc
Q 009494 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 489 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~--~~~~~~~ 489 (533)
|+||.+.+-|||+..+++||+||..|++..-+|...||+|.|++..+ |-|++.+
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999998654 4455544
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.5e-20 Score=200.13 Aligned_cols=314 Identities=18% Similarity=0.251 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+++-|..++..+... ...++.+.||||||.+|+-.+-..+. .|..+|+++|-.+|..|+...|+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----------cCCEEEEEeccccchHHHHHHHHH
Confidence 5688999999998855 57899999999999998766555443 467899999999999999888886
Q ss_pred HcCCCCCeEEEEEcCcchHHHHH---HHH-cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC------cH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG------FR 302 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~------~~ 302 (533)
.+ +.++..++++.+..+... +.. ....|+|+|=..+ ...++++++|||||=|.-.-.. ..
T Consensus 268 rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 268 RF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred Hh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCH
Confidence 54 357788888777655433 333 3489999995444 2468899999999999643211 34
Q ss_pred HHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhH----HHHHHHHHhhcc
Q 009494 303 DQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKK----KQKLFDILMSKQ 378 (533)
Q Consensus 303 ~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k----~~~l~~~l~~~~ 378 (533)
..+.....+....++|+-|||++-+....+.........+.........+.+.-+......... ...|++.+.+..
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 5666777777899999999999865544443322222222222222222332221111111111 256777777777
Q ss_pred CCCCCeEEEEcch------------------------------------------------------------hhHHHHH
Q 009494 379 HFTPPAVVYVGSR------------------------------------------------------------LGADLLS 398 (533)
Q Consensus 379 ~~~~~~LVf~~s~------------------------------------------------------------~~a~~l~ 398 (533)
..+.++|+|+|.+ ..++.++
T Consensus 418 ~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 418 ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 7788999999876 2346666
Q ss_pred HHHHhhc-CCeEEEEeCCCCHH--HHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC------------CH
Q 009494 399 NAISVTT-GMKALSIHGEKPMK--ERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------SI 463 (533)
Q Consensus 399 ~~L~~~~-~~~~~~~h~~~~~~--er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~------------s~ 463 (533)
+.|.+.. +.++..+.++.+.. .-+..+..|.+|+.+|||.|++++.|.|+|++..|...|... ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 6665433 56777888877654 356889999999999999999999999999999988766432 34
Q ss_pred hHHHHhhccccCCCCccEEEEEecCcC
Q 009494 464 KEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 464 ~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
..+.|-.|||||.+.+|.+++-.-..+
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 567899999999999999998876555
No 115
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1e-21 Score=202.48 Aligned_cols=329 Identities=17% Similarity=0.201 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+.|+|++.+.++. ++...|+...+|-|||+. .+..+..+.... .--..+|||||. .+..||.+++..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~------k~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG------KLTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc------cccCceEEEccH-HHHHHHHHHHHH
Confidence 55799999999877 566789999999999975 233333333321 112569999998 677899999999
Q ss_pred HcCCCCCeEEEEEcCcch--------HHHHHH-----HHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 233 LGKGLPFKTALVVGGDAM--------ARQVYR-----IQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~--------~~~~~~-----l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
+... +++..+++..+. ...... ......|+|+|++.+. +....+.--.++|+|+||.|++-+.
T Consensus 277 w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 277 WWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred hCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCC
Confidence 9875 678877775442 111111 1234579999998762 2223344557899999999999766
Q ss_pred CcHHHHHHHHHhCCCCcEEEEeccCCH-HHHHHH----------------------------------------------
Q 009494 300 GFRDQVMQIFRAISLPQILMYSATISQ-EVEKMS---------------------------------------------- 332 (533)
Q Consensus 300 ~~~~~~~~i~~~~~~~q~l~~SAT~~~-~~~~l~---------------------------------------------- 332 (533)
+ .++...+..++..+-|.+|+|+-. .+..+.
T Consensus 353 n--s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 353 N--SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred c--cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 5 567777788888888899999310 000000
Q ss_pred -----------Hh--------hCC--CeEEEEe------------------------CCCCC----------------CC
Q 009494 333 -----------SS--------ISK--DIVVVSV------------------------GKPNM----------------PN 351 (533)
Q Consensus 333 -----------~~--------~~~--~~~~i~~------------------------~~~~~----------------~~ 351 (533)
++ .+. +-.++.. +..+. ..
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 00 000 0000000 00000 00
Q ss_pred c---CceEE--E-EEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHH
Q 009494 352 K---AVKQL--A-IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 352 ~---~v~~~--~-~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~ 425 (533)
. ...+- + -......|...+..++......+.++|+|..++...+.|...|....++.+..+.|..+...|..++
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 0 00000 0 1122334667788888888888889999999999999999999866899999999999999999999
Q ss_pred HHHhcCCC-c-EEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEE--ecCc---CHHHHHHHH
Q 009494 426 RSFLVGEV-P-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF--VNEE---NKNLFQELV 498 (533)
Q Consensus 426 ~~f~~g~~-~-VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~--~~~~---~~~~~~~l~ 498 (533)
+.|+++.. . +|++|.+.+-|+|+..++-||+||+.|++..-.|..-||-|.|++..+.+| ++.. ++-+.+++.
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~ 670 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIF 670 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHH
Confidence 99998754 4 488999999999999999999999999999999999999999998665554 4432 444444444
Q ss_pred H
Q 009494 499 D 499 (533)
Q Consensus 499 ~ 499 (533)
+
T Consensus 671 K 671 (923)
T KOG0387|consen 671 K 671 (923)
T ss_pred H
Confidence 3
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=1.4e-20 Score=210.69 Aligned_cols=349 Identities=18% Similarity=0.259 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHH----HHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIP----SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
+++.+...+...||+ ++|.|.+++. .+..++++++.||||+|||++|++|++..+. .+.+++|.+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----------~~~~vvi~t 299 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----------TEKPVVIST 299 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----------CCCeEEEEe
Confidence 344667777778886 8999998776 4447889999999999999999999987643 234799999
Q ss_pred ccHHHHHHHHH-HHHHHcCCCC--CeEEEEEcCcch---------------H----------------------------
Q 009494 218 PTRELCIQVEE-QAKLLGKGLP--FKTALVVGGDAM---------------A---------------------------- 251 (533)
Q Consensus 218 Ptr~L~~Q~~~-~~~~~~~~~~--~~~~~~~gg~~~---------------~---------------------------- 251 (533)
||++|..|+.. .+..+.+.++ ++++.+.|+... .
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~ 379 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLK 379 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCC
Confidence 99999999754 5666655433 677766663221 0
Q ss_pred ----------------------------HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC---
Q 009494 252 ----------------------------RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--- 300 (533)
Q Consensus 252 ----------------------------~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~--- 300 (533)
....+....++|||+....|++-+.....-+....++||||||++.+..
T Consensus 380 ~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 380 GGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred CcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHH
Confidence 0001112245799999998877665443335667899999999986311
Q ss_pred ----c-----HHH----------------------------------------------------------------HHH
Q 009494 301 ----F-----RDQ----------------------------------------------------------------VMQ 307 (533)
Q Consensus 301 ----~-----~~~----------------------------------------------------------------~~~ 307 (533)
+ ... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000 000
Q ss_pred HHHh--------------------------------C-----------------CCCcEEEEeccCCH--HHHHHHHhhC
Q 009494 308 IFRA--------------------------------I-----------------SLPQILMYSATISQ--EVEKMSSSIS 336 (533)
Q Consensus 308 i~~~--------------------------------~-----------------~~~q~l~~SAT~~~--~~~~l~~~~~ 336 (533)
.+.. + ....+|++|||+.. ....+...+.
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 11357899999863 2444544443
Q ss_pred CC-eEEEEeCCCCCCCcCceEEEEE--ec------chhHHHHHHHHHhhc-cCCCCCeEEEEcchhhHHHHHHHHHh---
Q 009494 337 KD-IVVVSVGKPNMPNKAVKQLAIW--VE------SNKKKQKLFDILMSK-QHFTPPAVVYVGSRLGADLLSNAISV--- 403 (533)
Q Consensus 337 ~~-~~~i~~~~~~~~~~~v~~~~~~--~~------~~~k~~~l~~~l~~~-~~~~~~~LVf~~s~~~a~~l~~~L~~--- 403 (533)
-+ ...............-...+.. +. .......+.+.+... ....+++|||++|....+.++..|..
T Consensus 620 l~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred CCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 32 2212221111111111111111 11 111222344444332 22346899999999999999999973
Q ss_pred hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc--EEEEcCCCC--------------------
Q 009494 404 TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR--QVIIFDMPN-------------------- 461 (533)
Q Consensus 404 ~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~--~VI~~d~p~-------------------- 461 (533)
..++++ +..+.. .+|..+++.|++|+..||++|+.+++|+|+|+.. .||+..+|.
T Consensus 700 ~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 123333 333333 4789999999999999999999999999999865 566666553
Q ss_pred ----------CHhHHHHhhccccCCCCccEEEEEecCc--CHHHHHHHHHHHHHc
Q 009494 462 ----------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILKSS 504 (533)
Q Consensus 462 ----------s~~~y~qriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~~ 504 (533)
-...+.|.+||.-|..+..-++++++++ .+.+-+.+.+.|...
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~~ 831 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPEY 831 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCCc
Confidence 1133579999999987665567777765 566778888777653
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=8.5e-21 Score=203.29 Aligned_cols=317 Identities=19% Similarity=0.215 Sum_probs=226.5
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.| -.|+++|.-+--.+..| -|+.+.||+|||+++.+|++...+. |..+-|++|+.-||.|-++++..
T Consensus 79 lG-m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~----------G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS----------GKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred hC-CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 35 36778887665555444 5889999999999999999876653 66799999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhhh-cC----
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQ-RG---- 300 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~~-~~---- 300 (533)
+...+|+++.++.++.+..+.... -.++|+++|..-| .|+|+.+- .....+.++||||+|.++= ..
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHH--hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 999999999999887665553322 3389999999886 55554431 1247899999999998761 00
Q ss_pred -----------cHHHHHHHHHhCC--------------------C-----------------------------------
Q 009494 301 -----------FRDQVMQIFRAIS--------------------L----------------------------------- 314 (533)
Q Consensus 301 -----------~~~~~~~i~~~~~--------------------~----------------------------------- 314 (533)
....+..+...+. .
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 0011111111110 0
Q ss_pred --------------------------------------------------------------------------------
Q 009494 315 -------------------------------------------------------------------------------- 314 (533)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (533)
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHh
Confidence
Q ss_pred -CcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhh
Q 009494 315 -PQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 315 -~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~ 393 (533)
.++.+||+|...+...+...|..+.+.|....+...... ...++.....|...+.+-+......+.|+||-+.|.+.
T Consensus 384 Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~--~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDF--NDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred cchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccC--CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 034445555554445555555555554444333222211 12344555677788888888877889999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC-CcEEEEcccccccCCCC-----------------------
Q 009494 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELL----------------------- 449 (533)
Q Consensus 394 a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~-~~VLvaT~~~~~Gldi~----------------------- 449 (533)
++.++..|. ..+++.-++++.....|-+.+- ..|+ -.|.|||++++||.||.
T Consensus 462 SE~ls~~L~-~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~ 537 (913)
T PRK13103 462 SEHMSNLLK-KEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQI 537 (913)
T ss_pred HHHHHHHHH-HcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHH
Confidence 999999998 7888888888876544444443 3453 34999999999999995
Q ss_pred --------------CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 450 --------------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 450 --------------~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
+-=+||--..+.|-.--.|-.||+||.|.+|.+-.|++-.|
T Consensus 538 ~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 538 KADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22368888899999999999999999999999999998765
No 118
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=201.66 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC-
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK- 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~- 235 (533)
.|..||.+.+..+-.+++++|+|||.+|||++-...+=..+.. .....+|+++|+++|++|+...+.....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--------SDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--------cCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 5789999999999999999999999999999755554444433 4567799999999999998887764432
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc---CCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK---HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~---~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
..-.+...+.|......++. .-+|+|+|+-|+.+..++.. .....++++++|+||+|.+.++.-.-.++++ -.+
T Consensus 583 ~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eql-l~l 659 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQL-LLL 659 (1330)
T ss_pred CccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHH-HHh
Confidence 22223333444333222211 22599999999999888877 4456889999999999999876533333333 334
Q ss_pred CCCcEEEEeccCCH
Q 009494 313 SLPQILMYSATISQ 326 (533)
Q Consensus 313 ~~~q~l~~SAT~~~ 326 (533)
..++++++|||+.+
T Consensus 660 i~CP~L~LSATigN 673 (1330)
T KOG0949|consen 660 IPCPFLVLSATIGN 673 (1330)
T ss_pred cCCCeeEEecccCC
Confidence 67899999999754
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=3.2e-20 Score=201.68 Aligned_cols=322 Identities=15% Similarity=0.165 Sum_probs=191.1
Q ss_pred CCHHHHHHHHHHh----C------CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 158 PTPVQMQAIPSAL----S------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 158 p~p~Q~~~i~~~~----~------~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
|+++|..|+..+. . .+..++.++||||||++++..+.. ++. ....+++|||+|+.+|..|+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l~~-------~~~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-ALE-------LLKNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-HHh-------hcCCCeEEEEECcHHHHHHHH
Confidence 7899999998765 2 257999999999999976554433 322 145688999999999999999
Q ss_pred HHHHHHcCCCCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcC--CCCCCCe-eEEEEecchhhhhcCcHH
Q 009494 228 EQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKH--DIELDDI-RMFVLDEVDCMLQRGFRD 303 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~--~~~l~~~-~~vVvDEah~~~~~~~~~ 303 (533)
+.+..+..... .+..+.......+.. ...|+|+|.++|...+... .....+. -+||+||||+.. ++.
T Consensus 311 ~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~---~~~ 381 (667)
T TIGR00348 311 KEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ---YGE 381 (667)
T ss_pred HHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc---chH
Confidence 99998864211 111122222222222 3689999999997644321 1111111 289999999864 222
Q ss_pred HHHHHHHhCCCCcEEEEeccCCHHHHHH-HHhhC---CCeEEEEeCCCCCCCcCc-eEE-EE------Eecc--------
Q 009494 304 QVMQIFRAISLPQILMYSATISQEVEKM-SSSIS---KDIVVVSVGKPNMPNKAV-KQL-AI------WVES-------- 363 (533)
Q Consensus 304 ~~~~i~~~~~~~q~l~~SAT~~~~~~~l-~~~~~---~~~~~i~~~~~~~~~~~v-~~~-~~------~~~~-------- 363 (533)
....+...+++...++||||+-...... ...+. .+++.. ..-..+..... ..+ +. .+..
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 2233335678899999999985321110 01111 122111 10000000000 000 00 0000
Q ss_pred -------------------------------hhHHHHHHHHHhh-----ccCCCCCeEEEEcchhhHHHHHHHHHhhc--
Q 009494 364 -------------------------------NKKKQKLFDILMS-----KQHFTPPAVVYVGSRLGADLLSNAISVTT-- 405 (533)
Q Consensus 364 -------------------------------~~k~~~l~~~l~~-----~~~~~~~~LVf~~s~~~a~~l~~~L~~~~-- 405 (533)
......+...+.. ......+++|||.++.+|..+++.|.+..
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0000111111111 12234789999999999999999986332
Q ss_pred --CCeEEEEeCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEcCCCC
Q 009494 406 --GMKALSIHGEKPMK---------------------ERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIFDMPN 461 (533)
Q Consensus 406 --~~~~~~~h~~~~~~---------------------er~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~ 461 (533)
+...+.+++..+.. ....+++.|++ +.++|||.++++.+|+|.|.+++++...+-.
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 23455666544322 23468889976 6889999999999999999999988877666
Q ss_pred CHhHHHHhhccccCC-CC---ccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 462 SIKEYVHQIGRASQM-GD---EGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 462 s~~~y~qriGR~gR~-g~---~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+ ..++|++||+.|. .. .|..+-|... ++.+.+.|+.
T Consensus 621 ~-h~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al~~ 660 (667)
T TIGR00348 621 Y-HGLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDALSL 660 (667)
T ss_pred c-cHHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHHHH
Confidence 5 4589999999994 32 2444444432 3455555543
No 120
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=4.3e-21 Score=194.27 Aligned_cols=348 Identities=18% Similarity=0.212 Sum_probs=222.8
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCC
Q 009494 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLP 238 (533)
Q Consensus 160 p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~ 238 (533)
.++.+.+..+..++-++|++.||||||.. +|-+.+.-. -..+..+-+..|+|..|..+++... ++...+|
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~edG-------Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYEDG-------YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhcc-------cccCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 44555666666778899999999999984 433222111 1223345566699999887766544 3333333
Q ss_pred CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc-C-cHHHHHHHHHhCCCCc
Q 009494 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-G-FRDQVMQIFRAISLPQ 316 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~-~-~~~~~~~i~~~~~~~q 316 (533)
-.+ |.....+.. ......|=+.|-|.|++-..... .|.+++.||+||||.-.-. . .-..+..++.+..+.+
T Consensus 430 ~~V----GYsIRFEdv--T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 430 DTV----GYSIRFEDV--TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred ccc----ceEEEeeec--CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccce
Confidence 222 222222211 11235688999999977655443 5789999999999963211 1 2234455555667899
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhc--cCCCCCeEEEEcchhhH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLGA 394 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~~LVf~~s~~~a 394 (533)
+|.+|||+.. +.+...+..-|.+...|.. -.+...+...+-+...+..+.-.... ....+-+|||....+..
T Consensus 503 liVtSATm~a--~kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 503 LIVTSATMDA--QKFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred EEEeeccccH--HHHHHHhCCCceeeecCCc----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcch
Confidence 9999999985 7787777755654443332 12333333333333333322222221 12335799999988766
Q ss_pred HHHHHHHHh---------hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcC-------
Q 009494 395 DLLSNAISV---------TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------- 458 (533)
Q Consensus 395 ~~l~~~L~~---------~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d------- 458 (533)
+-.+..+.. ..++.+..+++.+++.-+.++++.-..|..+++|||++++..+.+|++.+||..+
T Consensus 577 E~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred hHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 555544431 1267789999999999999999888889999999999999999999999999844
Q ss_pred -----------CCCCHhHHHHhhccccCCCCccEEEEEecCcC--HHHHHHHHHHHHHcCCch------hhHHhHHhcCc
Q 009494 459 -----------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN--KNLFQELVDILKSSGAVR------LMTFCYILGRE 519 (533)
Q Consensus 459 -----------~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~~~------~~~~~~~l~~~ 519 (533)
.|-|-+.-.||.|||||.| +|.|+-++++.- .+++..-+--++.++-.. -....++++.+
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~Fd 735 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFD 735 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCC
Confidence 2567778899999999985 899999998631 122222222222222211 11235678899
Q ss_pred cCCCCCCCCcc
Q 009494 520 FTKSPPMDGYW 530 (533)
Q Consensus 520 ~~~~~~~~~~~ 530 (533)
|.+.||.|+.+
T Consensus 736 FmD~Pped~~~ 746 (1042)
T KOG0924|consen 736 FMDPPPEDNLL 746 (1042)
T ss_pred cCCCCHHHHHH
Confidence 99999998753
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.5e-19 Score=195.62 Aligned_cols=141 Identities=21% Similarity=0.333 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009494 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.+...+++.+......+.++||||+++..++.+++.|. ..|+++..+||++++.+|..+++.|+.|.+.|+|||+++++
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~-~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLK-ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHh-hcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 44567777777766678899999999999999999998 78999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCC-----CCCHhHHHHhhccccCCCCccEEEEEecC---------cCHHHHHHHHHHHHHcCCc
Q 009494 445 GVELLGVRQVIIFDM-----PNSIKEYVHQIGRASQMGDEGTAIVFVNE---------ENKNLFQELVDILKSSGAV 507 (533)
Q Consensus 445 Gldi~~v~~VI~~d~-----p~s~~~y~qriGR~gR~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~ 507 (533)
|+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++. .+....+++...++.....
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 584 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGI 584 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999874 78999999999999996 78999999985 3445555555555555443
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=5.8e-20 Score=194.67 Aligned_cols=286 Identities=22% Similarity=0.330 Sum_probs=198.0
Q ss_pred HHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH
Q 009494 147 LQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 147 ~~~l~~~-g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.+-+++. || .|+..|+--...+..|+++-+.||||.|||. |.+.+-.. .. ..|.++++|+||..|+.|
T Consensus 72 ~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~-~a--------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 72 EEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLY-LA--------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHH-HH--------hcCCeEEEEecCHHHHHH
Confidence 3444554 55 9999999999999999999999999999997 33333222 22 356889999999999999
Q ss_pred HHHHHHHHcCCCC-CeEEEEEcCc-c---hHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 226 VEEQAKLLGKGLP-FKTALVVGGD-A---MARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 226 ~~~~~~~~~~~~~-~~~~~~~gg~-~---~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
+++.++.++...+ ..+..+|.+. + ..+...++.+ +.+|+|+|.+-|...+.. +.-.++++|++|++|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 9999999986655 4444435544 2 2333445554 489999998766443332 22247899999999987632
Q ss_pred C-----------cHHH-----------------------HHHHH---------HhCCCCcEEEEeccCCHHH--HHHHHh
Q 009494 300 G-----------FRDQ-----------------------VMQIF---------RAISLPQILMYSATISQEV--EKMSSS 334 (533)
Q Consensus 300 ~-----------~~~~-----------------------~~~i~---------~~~~~~q~l~~SAT~~~~~--~~l~~~ 334 (533)
+ |... +.+++ ++....+++..|||..+.- ..+.+.
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 2 2111 11111 1113457899999985422 223333
Q ss_pred hCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcc---hhhHHHHHHHHHhhcCCeEEE
Q 009494 335 ISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS---RLGADLLSNAISVTTGMKALS 411 (533)
Q Consensus 335 ~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s---~~~a~~l~~~L~~~~~~~~~~ 411 (533)
++. +.++.......++...+... .-...+.+++.... .-.|||++. ++.|+.++++|+ ..|+++..
T Consensus 299 Llg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG---~GgLIfV~~d~G~e~aeel~e~Lr-~~Gi~a~~ 367 (1187)
T COG1110 299 LLG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG---DGGLIFVPIDYGREKAEELAEYLR-SHGINAEL 367 (1187)
T ss_pred HhC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC---CCeEEEEEcHHhHHHHHHHHHHHH-hcCceEEE
Confidence 322 33444444445554444433 33445555555443 347999999 899999999999 89999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCcEEEEc----ccccccCCCCC-ccEEEEcCCCC
Q 009494 412 IHGEKPMKERREIMRSFLVGEVPVIVAT----GILGRGVELLG-VRQVIIFDMPN 461 (533)
Q Consensus 412 ~h~~~~~~er~~~~~~f~~g~~~VLvaT----~~~~~Gldi~~-v~~VI~~d~p~ 461 (533)
+|++ .+..++.|..|+++|||++ +++-||+|+|. ++++|+++.|.
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9984 3678999999999999875 47899999996 89999999993
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=4.9e-20 Score=171.05 Aligned_cols=186 Identities=36% Similarity=0.582 Sum_probs=156.4
Q ss_pred cCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.++..|+++|.+++..+... +.+++.++||+|||.+++.+++..+.. ....++||++|++.++.|+...+.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 46778999999999999988 999999999999999988888877654 224679999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCC-ceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHH
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGV-ELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 310 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~ 310 (533)
.+............++.........+..+. +++++|++.+.+.+........+++++|+||+|.+....+...+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 887665545666677766566666666666 9999999999999988777788899999999999987567888888888
Q ss_pred hC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCC
Q 009494 311 AI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 311 ~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 346 (533)
.+ +..+++++|||+++........+....+.+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 77 6889999999999988888888888777666554
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2e-19 Score=190.74 Aligned_cols=316 Identities=17% Similarity=0.195 Sum_probs=225.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+--.+..| -|+.+.||-|||+++.+|++-..+. |..+-|++.+.-||..=.+++..+
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~----------GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT----------GKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc----------CCceEEEecchhhhhhhHHHHHHH
Confidence 55 7889998887666666 4799999999999999999876553 556888899999999888899999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhhh-cC-----
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQ-RG----- 300 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~~-~~----- 300 (533)
...+|+.+.++..+...... +-.-.++|+++|...| .++|+.+- .....+.|.||||+|.++= ..
T Consensus 143 y~fLGLsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 99999999998887665543 2234589999999887 56665431 2356788999999998761 00
Q ss_pred ----------cHHHHHHHHHhCC--------CC-----------------------------------------------
Q 009494 301 ----------FRDQVMQIFRAIS--------LP----------------------------------------------- 315 (533)
Q Consensus 301 ----------~~~~~~~i~~~~~--------~~----------------------------------------------- 315 (533)
+...+..+...+. ..
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 1111222222210 01
Q ss_pred --------------------------------------------------------------cEEEEeccCCHHHHHHHH
Q 009494 316 --------------------------------------------------------------QILMYSATISQEVEKMSS 333 (533)
Q Consensus 316 --------------------------------------------------------------q~l~~SAT~~~~~~~l~~ 333 (533)
++.+||+|...+...+..
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 244455554444445555
Q ss_pred hhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEe
Q 009494 334 SISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIH 413 (533)
Q Consensus 334 ~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h 413 (533)
.+..+.+.|....+...... ...++.....|...+.+-+......+.|+||.|.|.+.++.++..|. ..|++..+++
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~--~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~-~~gi~h~vLN 457 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDE--PDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLL-EANIPHTVLN 457 (925)
T ss_pred HhCCCEEECCCCCCeeeeeC--CCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCCceeec
Confidence 55544444443332211111 11334455667777888777777778999999999999999999998 7899999999
Q ss_pred CCCCHHHHHHHHHHHhcCC-CcEEEEcccccccCCCCCcc--------EEEEcCCCCCHhHHHHhhccccCCCCccEEEE
Q 009494 414 GEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLGVR--------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 414 ~~~~~~er~~~~~~f~~g~-~~VLvaT~~~~~Gldi~~v~--------~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
+.....|-..+- ..|. -.|.|||++++||.||.--. +||....|.|-.--.|-.||+||.|.+|.+-.
T Consensus 458 Ak~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 875533333332 4554 35999999999999997433 89999999999999999999999999999999
Q ss_pred EecCcC
Q 009494 485 FVNEEN 490 (533)
Q Consensus 485 ~~~~~~ 490 (533)
|++-.|
T Consensus 535 ~lSLeD 540 (925)
T PRK12903 535 FISLDD 540 (925)
T ss_pred EEecch
Confidence 998765
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.85 E-value=1.2e-19 Score=195.25 Aligned_cols=313 Identities=18% Similarity=0.214 Sum_probs=215.1
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGL 237 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~ 237 (533)
+..+.+.+.++.+...++|+|.||+|||+..---++..... .+...++++-.|+|--|..+++... +.+...
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~-------~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE-------SGAACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh-------cCCCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 67788899999999999999999999998644444444332 1356678888899988887766544 444445
Q ss_pred CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh-hcC-cHHHHHHHHHhCCCC
Q 009494 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRG-FRDQVMQIFRAISLP 315 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~-~~~-~~~~~~~i~~~~~~~ 315 (533)
+-.+....+..+... ....+++||.|.|++.+.. .-.+..++.||+||+|.-. +.. +.-.+..++...+..
T Consensus 248 g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 544444444333222 3378999999999999987 4468899999999999632 222 333444555555899
Q ss_pred cEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCC----------------cCceEE------------EEEecchhHH
Q 009494 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPN----------------KAVKQL------------AIWVESNKKK 367 (533)
Q Consensus 316 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~----------------~~v~~~------------~~~~~~~~k~ 367 (533)
++|+||||+.. +.+...+...++....+. ..+. ....+. ......+...
T Consensus 321 kvILMSAT~da--e~fs~YF~~~pvi~i~gr-tfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 321 KVILMSATLDA--ELFSDYFGGCPVITIPGR-TFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred eEEEeeeecch--HHHHHHhCCCceEeecCC-CcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 99999999884 444444444443322221 1110 000000 0000111112
Q ss_pred HHHHHHHhhc--cCCCCCeEEEEcchhhHHHHHHHHHhh------cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009494 368 QKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISVT------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 368 ~~l~~~l~~~--~~~~~~~LVf~~s~~~a~~l~~~L~~~------~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT 439 (533)
..+.+++... ....+.+|||.+...+...+.+.|... ..+-+..+|+.++..+++.++...-.|..+||+||
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 2222222211 134578999999999999999999631 12456789999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEE--------cCCCC----------CHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 440 GILGRGVELLGVRQVII--------FDMPN----------SIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~--------~d~p~----------s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
++++.+|.|+++-+||+ ||+-. |-..-.||.|||||. ..|.||.+++..
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999999998 44322 455668999999997 789999999864
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.84 E-value=8.6e-19 Score=185.62 Aligned_cols=320 Identities=15% Similarity=0.164 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHh---CCC-------cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL---SGK-------SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~---~~~-------~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.++|+|.+++..+. .|. ..|++..+|+|||+.. ++++..++++... ....-.++|||+|. .|+..|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~--~~~~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQ--AKPLINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcC--ccccccccEEEccH-HHHHHH
Confidence 57899999998766 222 3688889999999974 4455555443211 00112679999998 777889
Q ss_pred HHHHHHHcCCCCCeEEEEEcCcchH----HHHH---HHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 227 EEQAKLLGKGLPFKTALVVGGDAMA----RQVY---RIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~----~~~~---~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
+++|.++.....+....++|+.... ..+. ..+-..-|++.+++.+.+.... +....++++|+||.|++-+.
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch
Confidence 9999999775456777777776640 0000 1111245888899988655443 34567899999999998644
Q ss_pred CcHHHHHHHHHhCCCCcEEEEeccCCH------------------------------------------H-------HHH
Q 009494 300 GFRDQVMQIFRAISLPQILMYSATISQ------------------------------------------E-------VEK 330 (533)
Q Consensus 300 ~~~~~~~~i~~~~~~~q~l~~SAT~~~------------------------------------------~-------~~~ 330 (533)
...+...+..+..++-|++|+|+-. + +++
T Consensus 392 --~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 --DSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 5677788888899999999999310 0 001
Q ss_pred HHHhhCCCeEEEEeCCC-CCCCcCceEEE---------------------------------------------------
Q 009494 331 MSSSISKDIVVVSVGKP-NMPNKAVKQLA--------------------------------------------------- 358 (533)
Q Consensus 331 l~~~~~~~~~~i~~~~~-~~~~~~v~~~~--------------------------------------------------- 358 (533)
+.. +...++....+.. ....+....++
T Consensus 470 L~~-~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 470 LRE-LTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHH-HHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 100 0000000000000 00000000000
Q ss_pred -----------------------EEecchhHHHHHHHHHhhcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeC
Q 009494 359 -----------------------IWVESNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG 414 (533)
Q Consensus 359 -----------------------~~~~~~~k~~~l~~~l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~ 414 (533)
.......+...|..++.... ....++++..|.+...+.+....+ ..|+.+..+||
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~-~~g~~~~rLdG 627 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR-WRGYEVLRLDG 627 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh-hcCceEEEEcC
Confidence 00000112223333331111 111233344444555555555555 67999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--c-EEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEe
Q 009494 415 EKPMKERREIMRSFLVGEV--P-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 415 ~~~~~er~~~~~~f~~g~~--~-VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~ 486 (533)
.++..+|..+++.|++... . .|.+|.+.+.||++-+++-||.||++|+++.-.|.++|+-|.||+-.|+++-
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999999998533 3 4667889999999999999999999999999999999999999998777765
No 127
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.84 E-value=1.9e-19 Score=185.68 Aligned_cols=319 Identities=15% Similarity=0.193 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
++-++|.-.++++. .+-+.|+...+|-|||.. .++.+..+... +.....|||||...| ..|.+++.+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~-------g~~gpHLVVvPsSTl-eNWlrEf~k 469 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI-------GNPGPHLVVVPSSTL-ENWLREFAK 469 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc-------CCCCCcEEEecchhH-HHHHHHHHH
Confidence 47899999999876 566889999999999975 44555555442 334558999999888 569999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHc----CCceeecCHHHHHHHHH-cCCCCCCCeeEEEEecchhhhhcCcHHHHHH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQ----GVELIVGTPGRLIDLLM-KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 307 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Iii~Tp~~l~~~l~-~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~ 307 (533)
|+.. +++..+||......+++.... +++|+++|+.....--. +..+.-.++.++|+||+|.+.++. ...+..
T Consensus 470 wCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~ 546 (941)
T KOG0389|consen 470 WCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKH 546 (941)
T ss_pred hCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHH
Confidence 9986 588888887765555544322 48999999976632111 011234568899999999888776 333333
Q ss_pred HHHhCCCCcEEEEeccCCH-HHHH---------------------------------------------HHHhhCCCe--
Q 009494 308 IFRAISLPQILMYSATISQ-EVEK---------------------------------------------MSSSISKDI-- 339 (533)
Q Consensus 308 i~~~~~~~q~l~~SAT~~~-~~~~---------------------------------------------l~~~~~~~~-- 339 (533)
++. ++..+.|++|+|+-. .+.. -++.++.++
T Consensus 547 LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 547 LMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred hcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 332 356677888999310 0000 000011000
Q ss_pred ---------------EEEEe----------------------C--CCCCCCcC--c--------------eEEE------
Q 009494 340 ---------------VVVSV----------------------G--KPNMPNKA--V--------------KQLA------ 358 (533)
Q Consensus 340 ---------------~~i~~----------------------~--~~~~~~~~--v--------------~~~~------ 358 (533)
-.|.. . ..+..... + ++++
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00000 0 00000000 0 0000
Q ss_pred -------------------------------------------------EEecchhHHHHHHHHHhhccCCCCCeEEEEc
Q 009494 359 -------------------------------------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVG 389 (533)
Q Consensus 359 -------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~ 389 (533)
.......|...|-.+|......+.++|||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 0001123445566667667777889999999
Q ss_pred chhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC-Cc-EEEEcccccccCCCCCccEEEEcCCCCCHhHHH
Q 009494 390 SRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE-VP-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYV 467 (533)
Q Consensus 390 s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~-~~-VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~ 467 (533)
-....+.|...|. ..++....+.|.+.-.+|..+++.|...+ +. .|++|.+.+-|||+..+++||++|...++-.-.
T Consensus 786 FTqmLDILE~~L~-~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 786 FTQMLDILEVVLD-TLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHH-hcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999998 89999999999999999999999999864 44 488999999999999999999999999999999
Q ss_pred HhhccccCCCCccEE--EEEecCc
Q 009494 468 HQIGRASQMGDEGTA--IVFVNEE 489 (533)
Q Consensus 468 qriGR~gR~g~~g~~--~~~~~~~ 489 (533)
|.--||+|.|+...+ +.|++.+
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecC
Confidence 999999999997544 4455543
No 128
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=3.5e-18 Score=188.90 Aligned_cols=330 Identities=16% Similarity=0.245 Sum_probs=208.3
Q ss_pred cCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH-H
Q 009494 153 AGYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-E 227 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-~ 227 (533)
.|| .+++-|.+....+. .++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql~~ 309 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQIMA 309 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHHHH
Confidence 355 68999999666554 577899999999999999999988642 256799999999999998 5
Q ss_pred HHHHHHcCCCCCeEEEEEcCcchH--------------------------------------------------H-----
Q 009494 228 EQAKLLGKGLPFKTALVVGGDAMA--------------------------------------------------R----- 252 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~--------------------------------------------------~----- 252 (533)
+.+..+.+.+++++..+.|+...- .
T Consensus 310 ~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~ 389 (820)
T PRK07246 310 EEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHD 389 (820)
T ss_pred HHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhcc
Confidence 778877777777777666642210 0
Q ss_pred ----------------HHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-----c-------HH-
Q 009494 253 ----------------QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-----F-------RD- 303 (533)
Q Consensus 253 ----------------~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-----~-------~~- 303 (533)
...+-...++|||+.-..|...+.... .+...+++||||||++.+-. . ..
T Consensus 390 ~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 390 GNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 000011235699999888777664443 36789999999999875311 0 00
Q ss_pred -------------------------------------------------HH-----------HHHHH--h-C--------
Q 009494 304 -------------------------------------------------QV-----------MQIFR--A-I-------- 312 (533)
Q Consensus 304 -------------------------------------------------~~-----------~~i~~--~-~-------- 312 (533)
.+ ..++. . .
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 00 00000 0 0
Q ss_pred -----------------------CCCcEEEEeccCC--HHHHHHHHhhCCC-eEEEEeCCCCCCCcCceEEEEE--ec--
Q 009494 313 -----------------------SLPQILMYSATIS--QEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIW--VE-- 362 (533)
Q Consensus 313 -----------------------~~~q~l~~SAT~~--~~~~~l~~~~~~~-~~~i~~~~~~~~~~~v~~~~~~--~~-- 362 (533)
....+|++|||++ +.. .+...+.-+ ....... .....-...+.. +.
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~ 624 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE---KDKKQDQLVVVDQDMPLV 624 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC---CChHHccEEEeCCCCCCC
Confidence 0125688888885 222 244333321 1111111 111110111111 11
Q ss_pred ----chhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009494 363 ----SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA 438 (533)
Q Consensus 363 ----~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLva 438 (533)
.......+.+.+......++++||+++|....+.++..|. ...++. ...|... .|..+++.|+++.-.||++
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~-~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLD-QWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHh-hcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 1122334555544433456899999999999999999997 334444 4444322 3566899999988899999
Q ss_pred cccccccCCCCC--ccEEEEcCCCC----C--------------------------HhHHHHhhccccCCCCccEEEEEe
Q 009494 439 TGILGRGVELLG--VRQVIIFDMPN----S--------------------------IKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 439 T~~~~~Gldi~~--v~~VI~~d~p~----s--------------------------~~~y~qriGR~gR~g~~g~~~~~~ 486 (533)
|+.+.+|+|+|. ...||+..+|. + ...+.|.+||.-|....--+++++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999999973 55566655542 1 233579999999987643356667
Q ss_pred cCc--CHHHHHHHHHHHHH
Q 009494 487 NEE--NKNLFQELVDILKS 503 (533)
Q Consensus 487 ~~~--~~~~~~~l~~~l~~ 503 (533)
+++ .+.+-+.+++.|.+
T Consensus 781 D~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 781 DRRILTKSYGKQILASLAE 799 (820)
T ss_pred CCcccccHHHHHHHHhCCC
Confidence 765 56677888777765
No 129
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.7e-19 Score=182.50 Aligned_cols=323 Identities=18% Similarity=0.190 Sum_probs=198.4
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHH-HHHHcCCCCCe
Q 009494 162 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ-AKLLGKGLPFK 240 (533)
Q Consensus 162 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~-~~~~~~~~~~~ 240 (533)
-++++.++..+--+||||.||||||. .+|-+.+=.......+ ..+..+=|.-|+|--|..+.+. ..+++. ++-.
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~e 335 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQS--SSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSE 335 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccC--CCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccc
Confidence 34566667777779999999999998 5665443222221111 1234566778999777765543 334443 3333
Q ss_pred E--EEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC------
Q 009494 241 T--ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------ 312 (533)
Q Consensus 241 ~--~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~------ 312 (533)
+ ..-+.|... ....|.++|.|.|+.-+.+. +.|..++.||+||||.-.- +.+.+.-+++++
T Consensus 336 VsYqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 336 VSYQIRFDGTIG--------EDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred eeEEEEeccccC--------CCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHH
Confidence 3 334444333 23789999999998887754 4588999999999996321 122222222222
Q ss_pred --------CCCcEEEEeccCCHHHHHHH--HhhCC-CeEEEEeCCCCCCCcCceEEEEEecchhH----HHHHHHHHhhc
Q 009494 313 --------SLPQILMYSATISQEVEKMS--SSISK-DIVVVSVGKPNMPNKAVKQLAIWVESNKK----KQKLFDILMSK 377 (533)
Q Consensus 313 --------~~~q~l~~SAT~~~~~~~l~--~~~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~k----~~~l~~~l~~~ 377 (533)
.+.++|+||||+.- .++. +.++. .|-.+.+.... -.+..++........ ..+.+.+...
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikVdARQ---fPVsIHF~krT~~DYi~eAfrKtc~IH~k- 478 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKVDARQ---FPVSIHFNKRTPDDYIAEAFRKTCKIHKK- 478 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEe--cccccCceecCCCCceeeeeccc---CceEEEeccCCCchHHHHHHHHHHHHhhc-
Confidence 36789999999863 3332 12221 12233332221 122222222222211 1222233222
Q ss_pred cCCCCCeEEEEcchhhHHHHHHHHHhhcCC--------------------------------------------------
Q 009494 378 QHFTPPAVVYVGSRLGADLLSNAISVTTGM-------------------------------------------------- 407 (533)
Q Consensus 378 ~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~-------------------------------------------------- 407 (533)
...+-+|||+....+++.|.+.|++....
T Consensus 479 -LP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~ 557 (1172)
T KOG0926|consen 479 -LPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELV 557 (1172)
T ss_pred -CCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhh
Confidence 23467999999999999999999744210
Q ss_pred ------------------------------------------------eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009494 408 ------------------------------------------------KALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 408 ------------------------------------------------~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT 439 (533)
-+..+++=++...+.++++.-..|..-.+|||
T Consensus 558 ~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaT 637 (1172)
T KOG0926|consen 558 DSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVAT 637 (1172)
T ss_pred cccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEec
Confidence 01145555667777777777777888899999
Q ss_pred ccccccCCCCCccEEEEcC--------CCC----------CHhHHHHhhccccCCCCccEEEEEecCc----C-------
Q 009494 440 GILGRGVELLGVRQVIIFD--------MPN----------SIKEYVHQIGRASQMGDEGTAIVFVNEE----N------- 490 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~~d--------~p~----------s~~~y~qriGR~gR~g~~g~~~~~~~~~----~------- 490 (533)
++++..+.||++++||..+ --. |-+.--||+|||||.| .|+||-+++.. +
T Consensus 638 NVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~~~Fe~fS~P 716 (1172)
T KOG0926|consen 638 NVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFSNDFEEFSLP 716 (1172)
T ss_pred cchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhhcchhhhccH
Confidence 9999999999999999844 322 3444579999999986 79999998742 1
Q ss_pred ---HHHHHHHHHHHHHcCCch
Q 009494 491 ---KNLFQELVDILKSSGAVR 508 (533)
Q Consensus 491 ---~~~~~~l~~~l~~~~~~~ 508 (533)
+.-...++=.|++.+...
T Consensus 717 EIlk~Pve~lvLqMKsMnI~k 737 (1172)
T KOG0926|consen 717 EILKKPVESLVLQMKSMNIDK 737 (1172)
T ss_pred HHhhCcHHHHHHHHHhcCccc
Confidence 223445555666665544
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.81 E-value=8.3e-18 Score=179.75 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=191.0
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|.-+.-.+ .+.-|+.+.||.|||+++.+|++-..+. |..+-|++++..||.+-++++..
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~----------G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT----------GKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc----------CCceEEEeCCHHHHHHHHHHHHH
Confidence 355 5788887766444 4457999999999999999999765443 56699999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhhh-cC----
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQ-RG---- 300 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~~-~~---- 300 (533)
+...+|+.+.++.++.+..+. +-.-.++|+++|...| .++|+.+- .....+.+.||||+|.++= ..
T Consensus 140 vy~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPL 217 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPL 217 (870)
T ss_pred HHHHcCCceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCce
Confidence 999999999999887776553 3334589999999766 35554331 2346688999999998761 00
Q ss_pred -----------cHHHHHHHHHhCC--------------------------------------------------------
Q 009494 301 -----------FRDQVMQIFRAIS-------------------------------------------------------- 313 (533)
Q Consensus 301 -----------~~~~~~~i~~~~~-------------------------------------------------------- 313 (533)
.......+...+.
T Consensus 218 iISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~ 297 (870)
T CHL00122 218 IISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFK 297 (870)
T ss_pred eccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 0001111111110
Q ss_pred -------------------------------------------------------------CCcEEEEeccCCHHHHHHH
Q 009494 314 -------------------------------------------------------------LPQILMYSATISQEVEKMS 332 (533)
Q Consensus 314 -------------------------------------------------------------~~q~l~~SAT~~~~~~~l~ 332 (533)
...+.+||+|...+...+.
T Consensus 298 d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~ 377 (870)
T CHL00122 298 NVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFE 377 (870)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHH
Confidence 0145667777666555666
Q ss_pred HhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEE
Q 009494 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~ 412 (533)
..+..+.+.|....+...... ...++.....|...+.+-+......+.|+||-+.|....+.++..|. ..|++..++
T Consensus 378 ~iY~l~vv~IPtnkp~~R~d~--~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~-~~gi~h~vL 454 (870)
T CHL00122 378 KIYNLEVVCIPTHRPMLRKDL--PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLK-EYRLPHQLL 454 (870)
T ss_pred HHhCCCEEECCCCCCccceeC--CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHH-HcCCcccee
Confidence 666666555544433322221 12334445567777777777777788999999999999999999998 889999999
Q ss_pred eCCCC--HHHHHHHHHHHhcCCC-cEEEEcccccccCCCC
Q 009494 413 HGEKP--MKERREIMRSFLVGEV-PVIVATGILGRGVELL 449 (533)
Q Consensus 413 h~~~~--~~er~~~~~~f~~g~~-~VLvaT~~~~~Gldi~ 449 (533)
++.-. ..|-..+-+ .|+. .|.|||++++||.||.
T Consensus 455 NAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 455 NAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred eCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 98642 334343333 4433 4999999999999974
No 131
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=3.6e-19 Score=190.87 Aligned_cols=316 Identities=18% Similarity=0.276 Sum_probs=218.6
Q ss_pred CCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-H
Q 009494 155 YDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-L 232 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~ 232 (533)
|...+|+|.++++.+. +++++++.+|+|||||.++.++++. .....++++++|..+.+...++.+. +
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----------~~~~~~~vyi~p~~~i~~~~~~~w~~~ 1209 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----------PDTIGRAVYIAPLEEIADEQYRDWEKK 1209 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----------CccceEEEEecchHHHHHHHHHHHHHh
Confidence 3345899999999988 5678999999999999999888765 2456789999999999987766554 6
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHH------HH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ------VM 306 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~------~~ 306 (533)
|....|..++.+.|..+..- ++....+|+|+||+++..+ + ..+.+++.|.||.|.+.+. ++.. ++
T Consensus 1210 f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r 1280 (1674)
T KOG0951|consen 1210 FSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMR 1280 (1674)
T ss_pred hccccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHH
Confidence 77776666666666554433 3445579999999999555 2 6788999999999988732 2222 22
Q ss_pred HHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHH-------HHHHHhhcc
Q 009494 307 QIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK-------LFDILMSKQ 378 (533)
Q Consensus 307 ~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~-------l~~~l~~~~ 378 (533)
.|-..+ +..+++++|..+.+ ..++ +......+....+.....+....+..+....-... .+..+.+..
T Consensus 1281 ~ia~q~~k~ir~v~ls~~lan-a~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1281 YIASQLEKKIRVVALSSSLAN-ARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred HHHHHHHhheeEEEeehhhcc-chhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 232222 67889999988877 4444 22222222333333333344444444443322221 223344445
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHh---------------------hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEE
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISV---------------------TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~---------------------~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLv 437 (533)
..+++.+||++++++|..++..|-. ....+..+-|.++++.+.+.+...|..|.+.|+|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 5678999999999999887755420 0112223338999999999999999999999998
Q ss_pred EcccccccCCCCCccEEEE-----cC------CCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHH
Q 009494 438 ATGILGRGVELLGVRQVII-----FD------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 438 aT~~~~~Gldi~~v~~VI~-----~d------~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 499 (533)
...- ..|+-... ..||. || .+-++.+..||+|+|.| .|.|++++...+++++++++.
T Consensus 1437 ~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred EEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 8776 78887543 44444 22 23458999999999998 579999999999998887653
No 132
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.79 E-value=8.6e-18 Score=180.17 Aligned_cols=324 Identities=15% Similarity=0.179 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.++.||++.++++. -+-+.|+|..+|-|||+..+--+.....+ +......-.....|||||. .|+--|..++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~-r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYK-RRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHh-hcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 45789999999866 24578999999999998754322222222 1111122233448999998 888889999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
|+.. +++....|+.......+.-.++.+|+|++++.+.+-... +.-..+.|+|+||-|-|-+. ...+...++.+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 9876 566666766555554444455689999999988421111 11235779999999988643 56666777777
Q ss_pred CCCcEEEEeccC--------------------------------------------------------------------
Q 009494 313 SLPQILMYSATI-------------------------------------------------------------------- 324 (533)
Q Consensus 313 ~~~q~l~~SAT~-------------------------------------------------------------------- 324 (533)
.....+.+|+|+
T Consensus 1127 ~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1127 RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 667778889992
Q ss_pred ---------CHHH------------HHHHHhhCCC---eEEEEeCCCCCCCcC--------------ceEE--EEE----
Q 009494 325 ---------SQEV------------EKMSSSISKD---IVVVSVGKPNMPNKA--------------VKQL--AIW---- 360 (533)
Q Consensus 325 ---------~~~~------------~~l~~~~~~~---~~~i~~~~~~~~~~~--------------v~~~--~~~---- 360 (533)
|+.+ .++.+.+... -+...+......... ...+ ...
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 1100 0000000000 000000000000000 0000 000
Q ss_pred -------------------ecchhHHHHHHHHHhhccC--------------CCCCeEEEEcchhhHHHHHHHHHhhc--
Q 009494 361 -------------------VESNKKKQKLFDILMSKQH--------------FTPPAVVYVGSRLGADLLSNAISVTT-- 405 (533)
Q Consensus 361 -------------------~~~~~k~~~l~~~l~~~~~--------------~~~~~LVf~~s~~~a~~l~~~L~~~~-- 405 (533)
+....|...|-++|..... .++++||||.-+..++.+.+.|-+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0112234455555544211 24699999999999999999986433
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcC-CCcEE-EEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEE-
Q 009494 406 GMKALSIHGEKPMKERREIMRSFLVG-EVPVI-VATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA- 482 (533)
Q Consensus 406 ~~~~~~~h~~~~~~er~~~~~~f~~g-~~~VL-vaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~- 482 (533)
.+....+.|..++.+|.++.+.|+++ .++|| ++|-+.+-|+|+.++++||+++=.|++..-.|.+-||+|.|++..+
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 34456899999999999999999998 78885 5778999999999999999999999999999999999999998654
Q ss_pred -EEEecC
Q 009494 483 -IVFVNE 488 (533)
Q Consensus 483 -~~~~~~ 488 (533)
+-++..
T Consensus 1447 VyRlItr 1453 (1549)
T KOG0392|consen 1447 VYRLITR 1453 (1549)
T ss_pred eeeehhc
Confidence 445543
No 133
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.9e-18 Score=170.76 Aligned_cols=325 Identities=12% Similarity=0.075 Sum_probs=232.6
Q ss_pred HHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 151 EAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 151 ~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.++--+....+|.+++..+-.|++.++.-.|.+||.+++.+..+..+.. ......+++.|+.++++...+-+
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL--------CHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc--------CcccceecchhHHHHhhccCCce
Confidence 4444567789999999999999999999999999999998887766543 33445889999999987543332
Q ss_pred HHHcC---CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC----CCCCeeEEEEecchhhhhcCcHH
Q 009494 231 KLLGK---GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI----ELDDIRMFVLDEVDCMLQRGFRD 303 (533)
Q Consensus 231 ~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~----~l~~~~~vVvDEah~~~~~~~~~ 303 (533)
.-... ...-.++-.+.|.+......-++.+.+++++.|........-+.. .+-...++++||+|..... |..
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 21111 112345666777787777777888999999999988654443322 2345667999999976532 333
Q ss_pred HHHHHHHhC----------CCCcEEEEeccCCHHHHHHHHhhCCCeE-EEEeCCCCCCCcCceEEEEEecc---------
Q 009494 304 QVMQIFRAI----------SLPQILMYSATISQEVEKMSSSISKDIV-VVSVGKPNMPNKAVKQLAIWVES--------- 363 (533)
Q Consensus 304 ~~~~i~~~~----------~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~v~~~~~~~~~--------- 363 (533)
.+...++++ ...+++--|||+...++.....+.-+-+ .+..+.. +..-.+.+.|.+.
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS---Ps~~K~~V~WNP~~~P~~~~~~ 507 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS---PSSEKLFVLWNPSAPPTSKSEK 507 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC---CCccceEEEeCCCCCCcchhhh
Confidence 333333222 5678999999998777666555544333 2333222 2233556666442
Q ss_pred hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc---C----CeEEEEeCCCCHHHHHHHHHHHhcCCCcEE
Q 009494 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT---G----MKALSIHGEKPMKERREIMRSFLVGEVPVI 436 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~---~----~~~~~~h~~~~~~er~~~~~~f~~g~~~VL 436 (533)
..+......++.+....+-++|-||.+++-|+.+....+... + ..+..+.||...++|+.+..+.--|+..-+
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi 587 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI 587 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE
Confidence 112223334444444556789999999999998887665211 1 235678999999999999999999999999
Q ss_pred EEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 437 VATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 437 vaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
|||++++-||||..++.|++.++|.|+..+.|+.|||||.++...++.+..
T Consensus 588 IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 588 IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999999999999999999999999988876665543
No 134
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=1e-18 Score=171.75 Aligned_cols=322 Identities=16% Similarity=0.173 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHhC---CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALS---GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
..++|+|..++..+.. .|+.+|+.|.|+|||++-.-++. --++++||+|.+.--++||..+++.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------tikK~clvLcts~VSVeQWkqQfk~ 367 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------TIKKSCLVLCTSAVSVEQWKQQFKQ 367 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-------------eecccEEEEecCccCHHHHHHHHHh
Confidence 4689999999999883 36899999999999986433221 1245699999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC--------CCCCCCeeEEEEecchhhhhcCcHHH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--------DIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~--------~~~l~~~~~vVvDEah~~~~~~~~~~ 304 (533)
|...-+-.++....... .....++.|+|+|+.++..--++. .+.-..++++++||+|.+...-|+..
T Consensus 368 wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRV 442 (776)
T KOG1123|consen 368 WSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRV 442 (776)
T ss_pred hcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHH
Confidence 97654444444433322 223467899999998774322211 12245689999999998876656654
Q ss_pred HHHHHHhCCCCcEEEEeccCCHHHHHHHHh-hC--C--------------CeEEEEeCCCCCC-----------CcCceE
Q 009494 305 VMQIFRAISLPQILMYSATISQEVEKMSSS-IS--K--------------DIVVVSVGKPNMP-----------NKAVKQ 356 (533)
Q Consensus 305 ~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~-~~--~--------------~~~~i~~~~~~~~-----------~~~v~~ 356 (533)
+..+- ..-.+++|||+-.+-.++... ++ + ..-.+...+.+-+ ...-+.
T Consensus 443 lsiv~----aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 443 LSIVQ----AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHH----HHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 44443 344589999975433222110 00 0 0001111111110 111122
Q ss_pred EEEEecchhHHHHHHHHHh-hccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC-CCc
Q 009494 357 LAIWVESNKKKQKLFDILM-SKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP 434 (533)
Q Consensus 357 ~~~~~~~~~k~~~l~~~l~-~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g-~~~ 434 (533)
...++.+..|... .++|. -+...+.++|||..+.-.....+-.|. . ..++|.+++.||..+++.|+-+ .++
T Consensus 519 ~lLyvMNP~KFra-CqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~----K--pfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 519 MLLYVMNPNKFRA-CQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG----K--PFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred heeeecCcchhHH-HHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC----C--ceEECCCchhHHHHHHHhcccCCccc
Confidence 3344444444433 33333 334467799999988776666665444 2 3578999999999999999865 788
Q ss_pred EEEEcccccccCCCCCccEEEEcCCC-CCHhHHHHhhccccCCCC---c---cEEEEEecCc--CHHHHHHHHHHHHHcC
Q 009494 435 VIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGD---E---GTAIVFVNEE--NKNLFQELVDILKSSG 505 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~d~p-~s~~~y~qriGR~gR~g~---~---g~~~~~~~~~--~~~~~~~l~~~l~~~~ 505 (533)
.++-+.+....+|+|.++++|..... .|-.+-.||+||..|+.+ . ...+++++.+ +.-+..+-.++|-..|
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FLidQG 671 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFLIDQG 671 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhhhhcC
Confidence 89999999999999999999987654 367788999999888743 1 3445555554 3344445555665554
Q ss_pred C
Q 009494 506 A 506 (533)
Q Consensus 506 ~ 506 (533)
.
T Consensus 672 Y 672 (776)
T KOG1123|consen 672 Y 672 (776)
T ss_pred c
Confidence 4
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=6.2e-18 Score=146.26 Aligned_cols=120 Identities=33% Similarity=0.597 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009494 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.|...+.+++......++++||||++...++.+++.|. ..+.++..+||+++..+|..+++.|.+|...||++|+++++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLR-KPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHH-hcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 67777888887765567899999999999999999998 57788999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEE
Q 009494 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 445 Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~ 485 (533)
|+|+|.+++||++++|++..+|.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
No 136
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=3.1e-18 Score=180.88 Aligned_cols=328 Identities=16% Similarity=0.175 Sum_probs=220.4
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+.+||...+.++. .+-+.|+...||-|||.. .+.++.+++..+ +.....||++|+..|.+ |..+|.+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K------~~~GP~LvivPlstL~N-W~~Ef~k 465 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK------QMQGPFLIIVPLSTLVN-WSSEFPK 465 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc------ccCCCeEEeccccccCC-chhhccc
Confidence 67899999998876 345789999999999986 566677777643 22334788999999977 8888888
Q ss_pred HcCCCCCeEEEEEcCcchHH-HH--HHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHH
Q 009494 233 LGKGLPFKTALVVGGDAMAR-QV--YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~-~~--~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~ 309 (533)
+... +..+. |-|.+... .+ .....+.+|+++|++.+.. .+..+.--++.|+||||.|+|.+.. ..+...+
T Consensus 466 WaPS--v~~i~-YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L 538 (1157)
T KOG0386|consen 466 WAPS--VQKIQ-YKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTL 538 (1157)
T ss_pred cccc--eeeee-eeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHh
Confidence 8765 33333 44443221 11 1112458999999998854 2222334467899999999997532 2333333
Q ss_pred H-hCCCCcEEEEeccC----------------------------------------------------------------
Q 009494 310 R-AISLPQILMYSATI---------------------------------------------------------------- 324 (533)
Q Consensus 310 ~-~~~~~q~l~~SAT~---------------------------------------------------------------- 324 (533)
. +.....-+++|+|+
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 3 33344455566662
Q ss_pred -----------CHHHHHHHH------------hhCCCeEEE-Ee--CCCC------------------CCCcCce----E
Q 009494 325 -----------SQEVEKMSS------------SISKDIVVV-SV--GKPN------------------MPNKAVK----Q 356 (533)
Q Consensus 325 -----------~~~~~~l~~------------~~~~~~~~i-~~--~~~~------------------~~~~~v~----~ 356 (533)
|..++...+ ......... .. +... ....++. .
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~ 698 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL 698 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccc
Confidence 111111111 000000000 00 0000 0000000 0
Q ss_pred EE---EEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 009494 357 LA---IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 357 ~~---~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~ 433 (533)
.+ ..+....|...|-.+|-+....++++|.|+....-.+.+..+|. ..++....+.|.+...+|...++.|..-..
T Consensus 699 ~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~-~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 699 HYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQ-IREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred ccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHh-hhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 00 00112234444555666667788999999999999999999998 888999999999999999999999998654
Q ss_pred c---EEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHH
Q 009494 434 P---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 500 (533)
Q Consensus 434 ~---VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 500 (533)
+ +|.+|...+.|+|+..+++||+||..|++....|+.-||.|.|+...+-++....-..+-+.++..
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 4 688999999999999999999999999999999999999999999888888776655555555544
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.8e-16 Score=169.31 Aligned_cols=275 Identities=17% Similarity=0.207 Sum_probs=187.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+--.+..| -|+.+.||-|||+++.+|++...+. |..+-||+++..||..-.+++..+
T Consensus 83 G~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~----------GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT----------GKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred CC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc----------CCCeEEEeCCHHHHHhHHHHHHHH
Confidence 44 6778887766555444 5899999999999999999876654 566999999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhh-cC-----
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ-RG----- 300 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~-~~----- 300 (533)
...+|+.+.++.++.+..+ .+..-.++|+++|+..| .++|+.+ ......+.+.||||+|.++= ..
T Consensus 150 y~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 9999999999887765544 33445699999999987 4444322 23457789999999998751 00
Q ss_pred ----------cHHHHHHHHHhCC---------------CC----------------------------------------
Q 009494 301 ----------FRDQVMQIFRAIS---------------LP---------------------------------------- 315 (533)
Q Consensus 301 ----------~~~~~~~i~~~~~---------------~~---------------------------------------- 315 (533)
.......+...+. ..
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 0011111111110 01
Q ss_pred --------------------------------------------------------------------cEEEEeccCCHH
Q 009494 316 --------------------------------------------------------------------QILMYSATISQE 327 (533)
Q Consensus 316 --------------------------------------------------------------------q~l~~SAT~~~~ 327 (533)
++.+||+|...+
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 344555555444
Q ss_pred HHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCC
Q 009494 328 VEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGM 407 (533)
Q Consensus 328 ~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~ 407 (533)
...+...+..+.+.+....+...... ....+.....|...+.+-+......+.|+||-+.|.+.++.++..|. ..|+
T Consensus 388 ~~Ef~~iY~l~Vv~IPTnkP~~R~d~--~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~-~~gi 464 (939)
T PRK12902 388 EVEFEKTYKLEVTVIPTNRPRRRQDW--PDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQ-EQGI 464 (939)
T ss_pred HHHHHHHhCCcEEEcCCCCCeeeecC--CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHH-HcCC
Confidence 44455555555444443333222211 12234444567778887777777788999999999999999999998 8899
Q ss_pred eEEEEeCCCC--HHHHHHHHHHHhcCCC-cEEEEcccccccCCCC
Q 009494 408 KALSIHGEKP--MKERREIMRSFLVGEV-PVIVATGILGRGVELL 449 (533)
Q Consensus 408 ~~~~~h~~~~--~~er~~~~~~f~~g~~-~VLvaT~~~~~Gldi~ 449 (533)
+.-++++.-. ..|-..+-+ .|+. .|.|||++++||.||.
T Consensus 465 ~h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 465 PHNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 9989998632 233333332 4543 4999999999999975
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.76 E-value=3.1e-17 Score=161.34 Aligned_cols=310 Identities=14% Similarity=0.176 Sum_probs=202.3
Q ss_pred CCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 156 DMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+.|+|.+.+...+ .|..+++...+|-|||+.++.-+.-+.. ....||+||. .+-..|.+.+.+|.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-----------EwplliVcPA-svrftWa~al~r~l 264 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-----------EWPLLIVCPA-SVRFTWAKALNRFL 264 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-----------cCcEEEEecH-HHhHHHHHHHHHhc
Confidence 456799999988766 6788999999999999976533322221 2338999998 45467999999998
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-C
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S 313 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~ 313 (533)
...-. +..+.++..... .+-....|.|.+++.+..+-. .+.-..+.+||+||.|.+.+..- .....++.-+ .
T Consensus 265 ps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~skt-kr~Ka~~dllk~ 337 (689)
T KOG1000|consen 265 PSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKT-KRTKAATDLLKV 337 (689)
T ss_pred ccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccch-hhhhhhhhHHHH
Confidence 76533 444455443322 123346799999998854432 22334588999999998865432 1222222222 2
Q ss_pred CCcEEEEeccCC----H---------------HHHHHHHhhCC-CeEEEEeCCCC-------------------------
Q 009494 314 LPQILMYSATIS----Q---------------EVEKMSSSISK-DIVVVSVGKPN------------------------- 348 (533)
Q Consensus 314 ~~q~l~~SAT~~----~---------------~~~~l~~~~~~-~~~~i~~~~~~------------------------- 348 (533)
-.++|++|+|+. . ....++.++.. ..+.+-.....
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999952 1 11122222211 00000000000
Q ss_pred -CCCcCceEEEEEecc----------------------h----------------hHHHHHHHHHhh----ccCCCCCeE
Q 009494 349 -MPNKAVKQLAIWVES----------------------N----------------KKKQKLFDILMS----KQHFTPPAV 385 (533)
Q Consensus 349 -~~~~~v~~~~~~~~~----------------------~----------------~k~~~l~~~l~~----~~~~~~~~L 385 (533)
..++. ++.+..+.. . .|...+.+.+.. ......+.|
T Consensus 418 ~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 418 KQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred hhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 00111 112111100 0 011122233332 122345899
Q ss_pred EEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC-CCcE-EEEcccccccCCCCCccEEEEcCCCCCH
Q 009494 386 VYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATGILGRGVELLGVRQVIIFDMPNSI 463 (533)
Q Consensus 386 Vf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g-~~~V-LvaT~~~~~Gldi~~v~~VI~~d~p~s~ 463 (533)
||+......+.+...+. ..++..+.+.|..++.+|....+.|... ++.| +++..+++.|+++...+.|++..++|++
T Consensus 497 VFaHH~~vLd~Iq~~~~-~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVN-KRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEehhHHHHHHHHHHHH-HcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 99999999999999998 7889999999999999999999999875 5665 5677788999999999999999999999
Q ss_pred hHHHHhhccccCCCCccEEEEEe
Q 009494 464 KEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 464 ~~y~qriGR~gR~g~~g~~~~~~ 486 (533)
.-++|.=.|++|.|++..+.+.+
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ceEEechhhhhhccccceeeEEE
Confidence 99999999999999986555444
No 139
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.75 E-value=2.6e-16 Score=154.75 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=99.4
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC-CCcE-EEEcccccccCCCCCccEEEEcC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATGILGRGVELLGVRQVIIFD 458 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g-~~~V-LvaT~~~~~Gldi~~v~~VI~~d 458 (533)
..+.|||.......+.+.-.|. ..|+.++-+.|+|+...|...++.|.+. ++.| |++-.+.+-.+|+..+.+|+.+|
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~-kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLG-KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhh-ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 3478999999999999999998 8899999999999999999999999986 6665 67778888889999999999999
Q ss_pred CCCCHhHHHHhhccccCCCCc--cEEEEEecCcCHHHHHHHHHHHHH
Q 009494 459 MPNSIKEYVHQIGRASQMGDE--GTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 459 ~p~s~~~y~qriGR~gR~g~~--g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+-|++..-.|...|..|.|+. =.++.|+-++.. -.+++++-++
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi--E~kIieLQeK 761 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI--EEKIIELQEK 761 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccH--HHHHHHHHHH
Confidence 999999999999999999974 566677765432 2344444444
No 140
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.4e-16 Score=156.51 Aligned_cols=329 Identities=17% Similarity=0.148 Sum_probs=204.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+..|...++++...+.|++.-----+..+.+-+..+..++-++++|.||||||...=-..+...+. ....+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~---------~~~~v 94 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS---------HLTGV 94 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh---------hccce
Confidence 667888888988888887752222234444555666678889999999999998422222222221 11336
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
....|.|--|.++.... ...+.+...--+|.....+. ....+.-+-+||.++|++-..... .+.++++||+|||
T Consensus 95 ~CTQprrvaamsva~RV---adEMDv~lG~EVGysIrfEd--C~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDea 168 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRV---ADEMDVTLGEEVGYSIRFED--CTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEA 168 (699)
T ss_pred eecCchHHHHHHHHHHH---HHHhccccchhccccccccc--cCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechh
Confidence 67779998888765433 23333333333332222221 001112244678888776665554 4789999999999
Q ss_pred hhhh--hcCcHHHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 294 DCML--QRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 294 h~~~--~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
|.-. .......+..++..-++.++|.+|||+.. .++-..+...|+.-..+. ..+..++..-......+..+
T Consensus 169 hERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a--~Kfq~yf~n~Pll~vpg~-----~PvEi~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNRPDLKLVVMSATLDA--EKFQRYFGNAPLLAVPGT-----HPVEIFYTPEPERDYLEAAI 241 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhCCCceEEEeecccch--HHHHHHhCCCCeeecCCC-----CceEEEecCCCChhHHHHHH
Confidence 9521 11123344555555589999999999874 666666666665433221 12222222222222333333
Q ss_pred HHHhhc--cCCCCCeEEEEcchhhHHHHHHHHHhh--------cCCeEEEEeCCCCHHHHHHHHHHHh---cC--CCcEE
Q 009494 372 DILMSK--QHFTPPAVVYVGSRLGADLLSNAISVT--------TGMKALSIHGEKPMKERREIMRSFL---VG--EVPVI 436 (533)
Q Consensus 372 ~~l~~~--~~~~~~~LVf~~s~~~a~~l~~~L~~~--------~~~~~~~~h~~~~~~er~~~~~~f~---~g--~~~VL 436 (533)
..+.+. ....+-+|||....++.+..++.+... ....+..+| +.++..+++... +| ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 222221 233567999999999998888887632 135667777 333333333222 12 35799
Q ss_pred EEcccccccCCCCCccEEEEcCC------------------CCCHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 437 VATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 437 vaT~~~~~Gldi~~v~~VI~~d~------------------p~s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
|+|++++..+.++.+.+||.-++ |-|...-.||.|||||. .+|+|+.+++++
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999999998443 66888889999999996 789999999864
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.75 E-value=4e-15 Score=157.73 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=85.5
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhc----CCCcEEEEcccccccCCC-------
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV----GEVPVIVATGILGRGVEL------- 448 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~----g~~~VLvaT~~~~~Gldi------- 448 (533)
.++++||.+.|....+.++..|.....+++ .+.|+.+ .+...++.|++ |.-.||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~-l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEI-VIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCE-EEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 467999999999999999999975544443 4456543 45668888887 478999999999999999
Q ss_pred -C--CccEEEEcCCCCC-------------------------HhHHHHhhccccCCCCc--cEEEEEecCc-CHHHHHHH
Q 009494 449 -L--GVRQVIIFDMPNS-------------------------IKEYVHQIGRASQMGDE--GTAIVFVNEE-NKNLFQEL 497 (533)
Q Consensus 449 -~--~v~~VI~~d~p~s-------------------------~~~y~qriGR~gR~g~~--g~~~~~~~~~-~~~~~~~l 497 (533)
| .+..||+..+|.. .-.+.|-+||.-|.... --++++++++ .+.+.+.+
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHH
Confidence 2 4888998766631 23357899999998664 3344455544 44555555
Q ss_pred HHHHH
Q 009494 498 VDILK 502 (533)
Q Consensus 498 ~~~l~ 502 (533)
....+
T Consensus 626 ~~~~~ 630 (636)
T TIGR03117 626 QESVK 630 (636)
T ss_pred HHHHH
Confidence 54443
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=4.7e-18 Score=169.39 Aligned_cols=311 Identities=19% Similarity=0.175 Sum_probs=197.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
.+-++-+|||.||||.-++ +++. .....++..|.|-||..+++.+.+. |+.+-++.|.....
T Consensus 191 RkIi~H~GPTNSGKTy~AL----qrl~----------~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRAL----QRLK----------SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRF 252 (700)
T ss_pred heEEEEeCCCCCchhHHHH----HHHh----------hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeee
Confidence 3446669999999998653 3332 2455899999999999988887765 45555666644332
Q ss_pred HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC--CCcEEEEeccCCHHHH
Q 009494 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS--LPQILMYSATISQEVE 329 (533)
Q Consensus 252 ~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~--~~q~l~~SAT~~~~~~ 329 (533)
..-. .+.++.+=||.++.. --..+++.|+||++.|.|...+..+.+.+--+. ...+.+ .+.+.
T Consensus 253 ~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvl 317 (700)
T KOG0953|consen 253 VLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVL 317 (700)
T ss_pred cCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHH
Confidence 2111 122667777866651 124588999999999998876655555443221 111111 12234
Q ss_pred HHHHhhCC---CeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcC
Q 009494 330 KMSSSISK---DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG 406 (533)
Q Consensus 330 ~l~~~~~~---~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~ 406 (533)
.+.+.++. +-+.+...+...+. .+. +.++.-+..... + =-|.|-|++....+...+.+..+
T Consensus 318 dlV~~i~k~TGd~vev~~YeRl~pL--------~v~-----~~~~~sl~nlk~-G--DCvV~FSkk~I~~~k~kIE~~g~ 381 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVREYERLSPL--------VVE-----ETALGSLSNLKP-G--DCVVAFSKKDIFTVKKKIEKAGN 381 (700)
T ss_pred HHHHHHHhhcCCeeEEEeecccCcc--------eeh-----hhhhhhhccCCC-C--CeEEEeehhhHHHHHHHHHHhcC
Confidence 44444332 22222211111100 001 122333332222 2 24557788999999999986667
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhc--CCCcEEEEcccccccCCCCCccEEEEcCCC---------CCHhHHHHhhccccC
Q 009494 407 MKALSIHGEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDMP---------NSIKEYVHQIGRASQ 475 (533)
Q Consensus 407 ~~~~~~h~~~~~~er~~~~~~f~~--g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p---------~s~~~y~qriGR~gR 475 (533)
..+.+++|+++++.|..--..|++ ++.+|||||+++++|+|+ +++-||+++.- .+..+..|.+|||||
T Consensus 382 ~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 382 HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred cceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccc
Confidence 779999999999999999999998 899999999999999996 68888887753 467888999999999
Q ss_pred CCC---ccEEEEEecCcCHHHHHHHHH----HHHHcCCc-------------hhhHHhHHhcCccCCCCCCCCccccC
Q 009494 476 MGD---EGTAIVFVNEENKNLFQELVD----ILKSSGAV-------------RLMTFCYILGREFTKSPPMDGYWVQR 533 (533)
Q Consensus 476 ~g~---~g~~~~~~~~~~~~~~~~l~~----~l~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (533)
.|. .|.+.+|..++ ...+.+.++ .+..+|.- +.+.+..+|+....-|...+-||+|.
T Consensus 461 f~s~~~~G~vTtl~~eD-L~~L~~~l~~p~epi~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~ 537 (700)
T KOG0953|consen 461 FGSKYPQGEVTTLHSED-LKLLKRILKRPVEPIKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCN 537 (700)
T ss_pred cccCCcCceEEEeeHhh-HHHHHHHHhCCchHHHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccCCceEEec
Confidence 986 38888876643 333333332 33333332 23334555666666677777777773
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=1.9e-15 Score=170.20 Aligned_cols=135 Identities=9% Similarity=0.151 Sum_probs=96.4
Q ss_pred HHHHHHhhcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 009494 369 KLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGV 446 (533)
Q Consensus 369 ~l~~~l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~-~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gl 446 (533)
.+.+.+.... ..++++|||++|....+.+++.|...... ....+.-+++...|..+++.|+.++-.||++|+.+.+|+
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 4444444332 34578999999999999999999733221 122233344444688999999998888999999999999
Q ss_pred CCCC--ccEEEEcCCCC----C--------------------------HhHHHHhhccccCCCCccEEEEEecCc--CHH
Q 009494 447 ELLG--VRQVIIFDMPN----S--------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE--NKN 492 (533)
Q Consensus 447 di~~--v~~VI~~d~p~----s--------------------------~~~y~qriGR~gR~g~~g~~~~~~~~~--~~~ 492 (533)
|+|+ +..||+..+|. + ...+.|.+||.-|..+.--++++++++ .+.
T Consensus 819 D~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~ 898 (928)
T PRK08074 819 DIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTS 898 (928)
T ss_pred ccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccch
Confidence 9996 57888866553 1 223478899999987654467777765 667
Q ss_pred HHHHHHHHHHH
Q 009494 493 LFQELVDILKS 503 (533)
Q Consensus 493 ~~~~l~~~l~~ 503 (533)
+-+.+++.|-.
T Consensus 899 Yg~~~l~sLP~ 909 (928)
T PRK08074 899 YGKYFLESLPT 909 (928)
T ss_pred HHHHHHHhCCC
Confidence 77888777754
No 144
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.74 E-value=2.3e-16 Score=167.73 Aligned_cols=124 Identities=18% Similarity=0.276 Sum_probs=108.6
Q ss_pred hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEEcccc
Q 009494 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE--VPVIVATGIL 442 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~--~~VLvaT~~~ 442 (533)
.|.+.|.-+|.+....++++|||.......+.|..+|. ..|+-.+.+.|...-++|...++.|+.+. +..|++|...
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLn-yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLN-YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHh-hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 35566767777778889999999999999999999999 89999999999999999999999999864 4678899999
Q ss_pred cccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEE--EecCc
Q 009494 443 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV--FVNEE 489 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~--~~~~~ 489 (533)
+.|||+..+++||+||..|++..-.|.--|+.|.|+...+.+ |++++
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999999999999999999999988755544 55544
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=2.3e-17 Score=171.43 Aligned_cols=356 Identities=19% Similarity=0.240 Sum_probs=211.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCC
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 210 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 210 (533)
..|+.+.. .++..++.-..-.+|+|+|++|+.+...+ ...=+.+++|+|||++.+- +...+. .
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala-----------~ 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA-----------A 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh-----------h
Confidence 35555443 45566666666779999999999998854 2345567789999997543 333332 2
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH--------------------H---HHHH--HHcCCceee
Q 009494 211 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA--------------------R---QVYR--IQQGVELIV 265 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~--------------------~---~~~~--l~~~~~Iii 265 (533)
.++|+++|+.+|..|..+++..- +.+.++...+.+..... . .+.. -..+--||+
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 56999999999999877776643 33455655555432211 1 1111 112355999
Q ss_pred cCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHH------hCCCCcEEEEeccCCHHH-----------
Q 009494 266 GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR------AISLPQILMYSATISQEV----------- 328 (533)
Q Consensus 266 ~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~------~~~~~q~l~~SAT~~~~~----------- 328 (533)
+|++.+..+-.-....+..+++||.|||||...-.....=..-+. .++..+.+.||||+.---
T Consensus 286 sTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 286 STYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred EcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 999999888777777889999999999998642111100000011 112234567788853111
Q ss_pred ----------------------HHHHHhhCCCeEEE--EeCCCCCCCcCceEEEEEecchhHHHHHHHHH------hhcc
Q 009494 329 ----------------------EKMSSSISKDIVVV--SVGKPNMPNKAVKQLAIWVESNKKKQKLFDIL------MSKQ 378 (533)
Q Consensus 329 ----------------------~~l~~~~~~~~~~i--~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l------~~~~ 378 (533)
+...+.++.+..++ .+.... ....+.............+..-.++ .+..
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~-i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~ 444 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEV-IAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRN 444 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhh-hhhhhhhhccCcccccchhhhhhhhhhhhhhhhhc
Confidence 11112222222211 111111 1111111111111111112111111 1111
Q ss_pred C-C------------CCCeEEEEcchhhHHHHHHHHHh-----------h-cCC--eEEEEeCCCCHHHHHHHHH---HH
Q 009494 379 H-F------------TPPAVVYVGSRLGADLLSNAISV-----------T-TGM--KALSIHGEKPMKERREIMR---SF 428 (533)
Q Consensus 379 ~-~------------~~~~LVf~~s~~~a~~l~~~L~~-----------~-~~~--~~~~~h~~~~~~er~~~~~---~f 428 (533)
. . ..+.+-||.+.++...+++.+.. . .++ .+..+.|.|+..+|...+. .|
T Consensus 445 g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~ 524 (1518)
T COG4889 445 GEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTF 524 (1518)
T ss_pred cccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCC
Confidence 0 0 12678899988887777765531 1 233 3445678899888855544 34
Q ss_pred hcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCC---ccEEEEE-------------ecCcCHH
Q 009494 429 LVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD---EGTAIVF-------------VNEENKN 492 (533)
Q Consensus 429 ~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~---~g~~~~~-------------~~~~~~~ 492 (533)
...+++||--..-+++|+|+|.++-||+|++-.++-+.+|.+||+.|... -|..++= .++.+.+
T Consensus 525 ~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk 604 (1518)
T COG4889 525 EPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFK 604 (1518)
T ss_pred CcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHH
Confidence 55778899888889999999999999999999999999999999999642 2544432 2245667
Q ss_pred HHHHHHHHHHHcC
Q 009494 493 LFQELVDILKSSG 505 (533)
Q Consensus 493 ~~~~l~~~l~~~~ 505 (533)
..+++++.|.+..
T Consensus 605 ~VWqVlnALRShD 617 (1518)
T COG4889 605 NVWQVLKALRSHD 617 (1518)
T ss_pred HHHHHHHHHHhcC
Confidence 7788888886543
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.72 E-value=2.4e-17 Score=128.97 Aligned_cols=77 Identities=43% Similarity=0.780 Sum_probs=74.1
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCC
Q 009494 400 AISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG 477 (533)
Q Consensus 400 ~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g 477 (533)
+|. ..++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 2 ~L~-~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLE-KKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHH-HTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChH-HCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455 78999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=4.2e-16 Score=136.00 Aligned_cols=143 Identities=34% Similarity=0.510 Sum_probs=112.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
+++++.++||+|||.+++..+...... ...++++|++|++.++.|+.+.+...... +..+..+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 468999999999999887777665433 34678999999999999999988887765 677777777776666
Q ss_pred HHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHH-HHHHHhCCCCcEEEEeccC
Q 009494 253 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQV-MQIFRAISLPQILMYSATI 324 (533)
Q Consensus 253 ~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~-~~i~~~~~~~q~l~~SAT~ 324 (533)
.......+.+|+++|++.+...+.........++++|+||+|.+....+.... ..+.......+++++|||+
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55555677999999999998888776656778999999999998876544332 2333445778999999996
No 148
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.71 E-value=2e-16 Score=161.22 Aligned_cols=123 Identities=19% Similarity=0.291 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCc-EEEEcccc
Q 009494 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVP-VIVATGIL 442 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~-VLvaT~~~ 442 (533)
..|...|-++|.+....++++|+|+...+..+.+.++|. ..++....+.|.....+|..++.+|...++- +|++|.+.
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~-yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLV-YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHH-hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 345555666676777788999999999999999999998 8899999999999999999999999987665 48899999
Q ss_pred cccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 443 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
+-|||+..+++||+||..|++..-.|.+.||.|.|+...+.++-.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl 1150 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRL 1150 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeee
Confidence 999999999999999999999999999999999999866554443
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.8e-15 Score=163.22 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=106.3
Q ss_pred EecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009494 360 WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 360 ~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT 439 (533)
+.....|...+.+-+......+.|+||-+.|.+..+.|+..|. ..|++.-++++.....|-+.+-+.=+.| .|-|||
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~-~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIAT 683 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLK-MRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIAT 683 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHH-HcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEec
Confidence 3445567778888888877889999999999999999999998 7889888888876655555554443334 399999
Q ss_pred ccccccCCCC--------CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcC
Q 009494 440 GILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 440 ~~~~~Gldi~--------~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~ 490 (533)
++++||.||. +-=+||-...+.|...-.|-.||+||.|.+|.+-.|++-.|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999997 44578888899999999999999999999999999998765
No 150
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=5.1e-16 Score=142.55 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHhC-------CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALS-------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+..... ++++++|+..|+.|+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------------~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------------KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------------EEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------------ceeEecCHHHHHHHHHHH
Confidence 578999999999883 588999999999999987754444321 699999999999999999
Q ss_pred HHHHcCCCCCeEE-----------EEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC-----------CCCCCeeE
Q 009494 230 AKLLGKGLPFKTA-----------LVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-----------IELDDIRM 287 (533)
Q Consensus 230 ~~~~~~~~~~~~~-----------~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~-----------~~l~~~~~ 287 (533)
+..+......... ...................+++++|.++|........ ......++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDL 149 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESE
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCE
Confidence 9777654211110 0111111122222223457899999999987765421 23457889
Q ss_pred EEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCH
Q 009494 288 FVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~ 326 (533)
||+||||++.... .+..++. .....+|+||||+.+
T Consensus 150 vI~DEaH~~~~~~---~~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 150 VIIDEAHHYPSDS---SYREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp EEEETGGCTHHHH---HHHHHHH-SSCCEEEEEESS-S-
T ss_pred EEEehhhhcCCHH---HHHHHHc-CCCCeEEEEEeCccC
Confidence 9999999976433 1455555 778889999999863
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=1.1e-14 Score=148.92 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhc-cCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhc--CCCcE-EEEccc
Q 009494 366 KKQKLFDILMSK-QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV--GEVPV-IVATGI 441 (533)
Q Consensus 366 k~~~l~~~l~~~-~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~--g~~~V-LvaT~~ 441 (533)
|...+++++... .....+++|...-......+...|+ ..|.....+||.....+|..+++.|+. |..+| |++-..
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~-~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQ-KGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHh-hCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 444445554443 3344567777666666677778887 889999999999999999999999975 54566 556677
Q ss_pred ccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEE
Q 009494 442 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~ 485 (533)
.+-|+|+-..+|+|..|+.|++.--.|...|.-|.|++..+++.
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 78999999999999999999999999999999999998777664
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=9e-13 Score=144.22 Aligned_cols=132 Identities=19% Similarity=0.318 Sum_probs=92.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh----cCCCcEEEEccccc
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL----VGEVPVIVATGILG 443 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~----~g~~~VLvaT~~~~ 443 (533)
..+.+.+.......+.+|||++|....+.++..|....+.+ +..+|.. .|..+++.|+ .|+-.||++|+.+.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 34444444433345569999999999999999987444444 3445542 4677887776 46778999999999
Q ss_pred ccCCCCC--ccEEEEcCCCC----CH--------------------------hHHHHhhccccCCCCccEEEEEecCc--
Q 009494 444 RGVELLG--VRQVIIFDMPN----SI--------------------------KEYVHQIGRASQMGDEGTAIVFVNEE-- 489 (533)
Q Consensus 444 ~Gldi~~--v~~VI~~d~p~----s~--------------------------~~y~qriGR~gR~g~~g~~~~~~~~~-- 489 (533)
+|+|+|+ ++.||+..+|. ++ ..+.|.+||.-|....--++++++++
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~ 676 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLL 676 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccccc
Confidence 9999986 78899877653 11 13468899999986654466677765
Q ss_pred CHHHHHHHHHHHHH
Q 009494 490 NKNLFQELVDILKS 503 (533)
Q Consensus 490 ~~~~~~~l~~~l~~ 503 (533)
.+.+-+.+++.|-+
T Consensus 677 ~~~Yg~~~l~sLP~ 690 (697)
T PRK11747 677 TKRYGKRLLDALPP 690 (697)
T ss_pred chhHHHHHHHhCCC
Confidence 45666777766643
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=1.6e-12 Score=143.36 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=61.0
Q ss_pred cCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
+.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++...... +..+++++.+.|..-..|+.+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-------~~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-------PEVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-------cccccEEEEcccchHHHHHHH
Confidence 357777999999887655 788999999999999999999998865431 234689999999998899999
Q ss_pred HHHHH
Q 009494 229 QAKLL 233 (533)
Q Consensus 229 ~~~~~ 233 (533)
++++.
T Consensus 79 Elk~~ 83 (705)
T TIGR00604 79 ELRKL 83 (705)
T ss_pred HHHhh
Confidence 99885
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=6e-13 Score=146.45 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=86.0
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCC--ccEEEE
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLG--VRQVII 456 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~~~-~~~~~h~~~~~~er~~~~~~f~~g~~-~VLvaT~~~~~Gldi~~--v~~VI~ 456 (533)
.+++|||++|...+..+++.+. .... .....+|..+ +...++.|..+.- .++|+|+.+++|+|+|+ ...||+
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~-~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLK-DERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHh-hcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 3489999999999999999998 3332 2344455544 4578888887654 89999999999999996 477888
Q ss_pred cCCCC------------------------------CHhHHHHhhccccCCCCccEEEEEecCc--CHHHHHHHHHHHHHc
Q 009494 457 FDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILKSS 504 (533)
Q Consensus 457 ~d~p~------------------------------s~~~y~qriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~~ 504 (533)
...|. -+....|.+||+-|.-+..-++++++.+ ...+-+.+.+.|...
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 66653 2344689999999976665556666654 333555555555543
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=1.2e-14 Score=114.54 Aligned_cols=81 Identities=40% Similarity=0.688 Sum_probs=76.1
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccC
Q 009494 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 396 ~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR 475 (533)
.+++.|. ..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||++++|++...|.|++||++|
T Consensus 2 ~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 2 ELAELLK-ELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred HHHHHHH-HCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 4566776 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 009494 476 MG 477 (533)
Q Consensus 476 ~g 477 (533)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 75
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.56 E-value=9.4e-13 Score=141.65 Aligned_cols=281 Identities=14% Similarity=0.108 Sum_probs=171.8
Q ss_pred EEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHH--
Q 009494 177 VSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV-- 254 (533)
Q Consensus 177 v~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-- 254 (533)
..+-+|||||.+|+-.+-..+. .|..+||++|...|+.|+.+.++..+.. ..++.++++.+..+..
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLR----------AGRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRR 232 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHH----------cCCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHH
Confidence 3344699999998765554442 3667999999999999999999876541 4677788877765433
Q ss_pred -HHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC------cHHHHHHHHHhCCCCcEEEEeccCCH
Q 009494 255 -YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG------FRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 255 -~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~------~~~~~~~i~~~~~~~q~l~~SAT~~~ 326 (533)
..+..| ..|+|+|-..+ ...++++++|||||-|.-.-.. ....+.....+.....+|+-|||++-
T Consensus 233 w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 334444 78999994433 2468899999999999543211 22456666667789999999999987
Q ss_pred HHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEe---c-ch-h----HHHHHHHHHhhccCCCCCeEEEEcchhhH---
Q 009494 327 EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWV---E-SN-K----KKQKLFDILMSKQHFTPPAVVYVGSRLGA--- 394 (533)
Q Consensus 327 ~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~---~-~~-~----k~~~l~~~l~~~~~~~~~~LVf~~s~~~a--- 394 (533)
+....+.......+...-.......+.+...-..- . .. . -...+++.+.+....+ ++|||+|.+.-+
T Consensus 306 es~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l 384 (665)
T PRK14873 306 EAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSL 384 (665)
T ss_pred HHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCee
Confidence 66544433211111111000011112221111000 0 00 0 1134566666666666 999999987433
Q ss_pred --------------------------------------------------------HHHHHHHHhhc-CCeEEEEeCCCC
Q 009494 395 --------------------------------------------------------DLLSNAISVTT-GMKALSIHGEKP 417 (533)
Q Consensus 395 --------------------------------------------------------~~l~~~L~~~~-~~~~~~~h~~~~ 417 (533)
+.+++.|.+.. +.++..+
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~----- 459 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS----- 459 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-----
Confidence 22233332111 1122221
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcc----cccccCCCCCccEEEEcCCC------C------CHhHHHHhhccccCCCCccE
Q 009494 418 MKERREIMRSFLVGEVPVIVATG----ILGRGVELLGVRQVIIFDMP------N------SIKEYVHQIGRASQMGDEGT 481 (533)
Q Consensus 418 ~~er~~~~~~f~~g~~~VLvaT~----~~~~Gldi~~v~~VI~~d~p------~------s~~~y~qriGR~gR~g~~g~ 481 (533)
++..+++.|. ++.+|||+|. +++ +++..|+..|.. . ....+.|.+||+||....|.
T Consensus 460 --d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~ 531 (665)
T PRK14873 460 --GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQ 531 (665)
T ss_pred --ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCE
Confidence 2345788886 5899999999 655 356676665532 1 34556888999999988999
Q ss_pred EEEEecCcC
Q 009494 482 AIVFVNEEN 490 (533)
Q Consensus 482 ~~~~~~~~~ 490 (533)
+++..+++.
T Consensus 532 V~iq~~p~~ 540 (665)
T PRK14873 532 VVVVAESSL 540 (665)
T ss_pred EEEEeCCCC
Confidence 998865543
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.55 E-value=7.4e-12 Score=126.71 Aligned_cols=289 Identities=14% Similarity=0.225 Sum_probs=205.8
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCCC-CC----eEEEEEc--------------CcchHHHHHHHH----------
Q 009494 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PF----KTALVVG--------------GDAMARQVYRIQ---------- 258 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~----~~~~~~g--------------g~~~~~~~~~l~---------- 258 (533)
-..|++|||+|+|..|-++.+.+-.+.... .. +...-+| ....+.....+.
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 457999999999999999888777665431 00 0000011 111222222222
Q ss_pred ---------------cCCceeecCHHHHHHHHHc------CCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC----
Q 009494 259 ---------------QGVELIVGTPGRLIDLLMK------HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS---- 313 (533)
Q Consensus 259 ---------------~~~~Iii~Tp~~l~~~l~~------~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~---- 313 (533)
.++|||||+|=-|...+.. ..-.|+.+.++|+|.||.|+-. -+..+..++.++.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCC
Confidence 1367999999988777764 1223899999999999987744 4677777777761
Q ss_pred ---------------------CCcEEEEeccCCHHHHHHHHhhCCCeE---EEEeCCC-----CCCCcCceEEEEEecch
Q 009494 314 ---------------------LPQILMYSATISQEVEKMSSSISKDIV---VVSVGKP-----NMPNKAVKQLAIWVESN 364 (533)
Q Consensus 314 ---------------------~~q~l~~SAT~~~~~~~l~~~~~~~~~---~i~~~~~-----~~~~~~v~~~~~~~~~~ 364 (533)
.+|+|++|+...+++..+....+.+.. .+..... ......+.|.+..++..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 259999999999999988887555432 1111111 23345567777765533
Q ss_pred h-------HHHH----HHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 009494 365 K-------KKQK----LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 365 ~-------k~~~----l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~ 433 (533)
. +... ++..+.. ....+.+|||++|.-+-..+.++|+ ..++....+|...+..+-.++...|..|+.
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-KENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-hcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2 2222 2222322 3455789999999999999999998 889999999999999999999999999999
Q ss_pred cEEEEcccc--cccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCC------ccEEEEEecCcCHHHHHHHHH
Q 009494 434 PVIVATGIL--GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD------EGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 434 ~VLvaT~~~--~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~------~g~~~~~~~~~~~~~~~~l~~ 499 (533)
+||+.|.-+ -+-..+.++++||+|.+|..+.-|...++-.+.... ...|.++++.-|.-.++.++-
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 999999853 466778899999999999999988887765444332 579999999988888777764
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=1.5e-12 Score=141.66 Aligned_cols=310 Identities=18% Similarity=0.132 Sum_probs=172.2
Q ss_pred CCCHHHHHHHHHHhC--------CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALS--------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~--------~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
.-+.||-.|+..+.. |--++-.|.||+|||++=.-.| ..+. ....+.+..|..-.|.|.-|.-+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLs-------d~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALR-------DDKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhC-------CCCCCceEEEEccccceeccchH
Confidence 446899999988773 2225668999999998643222 2221 22455667676677777666665
Q ss_pred HHHHHcCCCCCeEEEEEcCcchHHHH-------------------------------------------HHHHc------
Q 009494 229 QAKLLGKGLPFKTALVVGGDAMARQV-------------------------------------------YRIQQ------ 259 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gg~~~~~~~-------------------------------------------~~l~~------ 259 (533)
.+++-..--.-..+++.||....+-. ..+.+
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 55543322223333444432211100 00110
Q ss_pred --CCceeecCHHHHHHHHHcC---CCCCC----CeeEEEEecchhhhhcCcHHHHHHHHH--hCCCCcEEEEeccCCHHH
Q 009494 260 --GVELIVGTPGRLIDLLMKH---DIELD----DIRMFVLDEVDCMLQRGFRDQVMQIFR--AISLPQILMYSATISQEV 328 (533)
Q Consensus 260 --~~~Iii~Tp~~l~~~l~~~---~~~l~----~~~~vVvDEah~~~~~~~~~~~~~i~~--~~~~~q~l~~SAT~~~~~ 328 (533)
...++|||+..++...... ...+. .-+.|||||+|.+-.. ....+..++. .....+++++|||+|+.+
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 1459999999997766321 11111 1346999999965322 2334445544 336789999999999876
Q ss_pred HHHHH-h----------hCC---CeEEE---EeCCCCCC--------------------------CcCce--EEEEEecc
Q 009494 329 EKMSS-S----------ISK---DIVVV---SVGKPNMP--------------------------NKAVK--QLAIWVES 363 (533)
Q Consensus 329 ~~l~~-~----------~~~---~~~~i---~~~~~~~~--------------------------~~~v~--~~~~~~~~ 363 (533)
..... . ... .++.| -+.+.... ...+. -.+..+..
T Consensus 639 ~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~ 718 (1110)
T TIGR02562 639 VKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSS 718 (1110)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCC
Confidence 54221 1 111 11111 11110000 00000 11111221
Q ss_pred h-----hHHHHHHHHH-------hhccC-----CCCC---eEEEEcchhhHHHHHHHHHhh-----cCCeEEEEeCCCCH
Q 009494 364 N-----KKKQKLFDIL-------MSKQH-----FTPP---AVVYVGSRLGADLLSNAISVT-----TGMKALSIHGEKPM 418 (533)
Q Consensus 364 ~-----~k~~~l~~~l-------~~~~~-----~~~~---~LVf~~s~~~a~~l~~~L~~~-----~~~~~~~~h~~~~~ 418 (533)
. .....+.+.+ .+... .+++ .||-++++..+..++..|-.. ..+...+||+...-
T Consensus 719 ~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l 798 (1110)
T TIGR02562 719 LPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPL 798 (1110)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChH
Confidence 1 1111222221 11111 1122 377788888888888888632 23457789999987
Q ss_pred HHHHHHHHHH----------------------hc----CCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhcc
Q 009494 419 KERREIMRSF----------------------LV----GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGR 472 (533)
Q Consensus 419 ~er~~~~~~f----------------------~~----g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR 472 (533)
..|..+++.. .+ +...|+|+|++++-|+|+ +.+++|. -|.+++..+|++||
T Consensus 799 ~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 799 LLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhc
Confidence 7777766543 11 356799999999999995 4555544 45669999999999
Q ss_pred ccCCCC
Q 009494 473 ASQMGD 478 (533)
Q Consensus 473 ~gR~g~ 478 (533)
+.|.|.
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 999875
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.51 E-value=6.3e-13 Score=151.68 Aligned_cols=326 Identities=17% Similarity=0.188 Sum_probs=209.4
Q ss_pred CCCCHHHHHHHHHHh-----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
..++++|.+.++++. .+.+.+++..+|.|||+..+..+.. .... .....+.+++++|+ +++.+|.+++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~-----~~~~~~~~liv~p~-s~~~nw~~e~ 409 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLES-----IKVYLGPALIVVPA-SLLSNWKREF 409 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhc-----ccCCCCCeEEEecH-HHHHHHHHHH
Confidence 467899999998855 3677889999999999875443333 2221 11124679999999 5557799999
Q ss_pred HHHcCCCCCeEEEEEcCcch----HHHHHHHHcC-----CceeecCHHHHHHHH-HcCCCCCCCeeEEEEecchhhhhcC
Q 009494 231 KLLGKGLPFKTALVVGGDAM----ARQVYRIQQG-----VELIVGTPGRLIDLL-MKHDIELDDIRMFVLDEVDCMLQRG 300 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~----~~~~~~l~~~-----~~Iii~Tp~~l~~~l-~~~~~~l~~~~~vVvDEah~~~~~~ 300 (533)
.++...... +...+|.... ......+... .+++++|++.+...+ ....+.-..+.++|+||+|++.+..
T Consensus 410 ~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 410 EKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred hhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 888776543 4555554431 4444444432 799999999997642 1223445678899999999976543
Q ss_pred cHHHHHHHHHhCCCCcEEEEeccC-CHHHHHHH---H-----------------hh------------------------
Q 009494 301 FRDQVMQIFRAISLPQILMYSATI-SQEVEKMS---S-----------------SI------------------------ 335 (533)
Q Consensus 301 ~~~~~~~i~~~~~~~q~l~~SAT~-~~~~~~l~---~-----------------~~------------------------ 335 (533)
.....-+..+.....+.+|+|+ .+.+.++. . ++
T Consensus 489 --s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 566 (866)
T COG0553 489 --SSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLR 566 (866)
T ss_pred --hHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHH
Confidence 1111112233333335555553 11000000 0 00
Q ss_pred -------C----CCe-EEEEe------------------------C-------------CCC---------CC-------
Q 009494 336 -------S----KDI-VVVSV------------------------G-------------KPN---------MP------- 350 (533)
Q Consensus 336 -------~----~~~-~~i~~------------------------~-------------~~~---------~~------- 350 (533)
+ .+. +.... . ... ..
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 646 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLT 646 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 0 000 00000 0 000 00
Q ss_pred -CcCceEEEEEec-----------------------------ch-hHHHHHHHHH-hhccCCCC--CeEEEEcchhhHHH
Q 009494 351 -NKAVKQLAIWVE-----------------------------SN-KKKQKLFDIL-MSKQHFTP--PAVVYVGSRLGADL 396 (533)
Q Consensus 351 -~~~v~~~~~~~~-----------------------------~~-~k~~~l~~~l-~~~~~~~~--~~LVf~~s~~~a~~ 396 (533)
...+...-..+. .. .|...+.+++ ......+. ++|||+......+.
T Consensus 647 ~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~i 726 (866)
T COG0553 647 RLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDL 726 (866)
T ss_pred HHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHH
Confidence 000000000000 11 4555666666 45555566 99999999999999
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC--CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhcccc
Q 009494 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG--EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS 474 (533)
Q Consensus 397 l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g--~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~g 474 (533)
+...+. ..++....++|.++.++|...++.|.++ ..-++++|.+.+.|+|+...++||+||+.|++....|.+.|+.
T Consensus 727 l~~~l~-~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~ 805 (866)
T COG0553 727 LEDYLK-ALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAH 805 (866)
T ss_pred HHHHHH-hcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHH
Confidence 999998 6668899999999999999999999996 3445778889999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCcCHH
Q 009494 475 QMGDEGTAIVFVNEENKN 492 (533)
Q Consensus 475 R~g~~g~~~~~~~~~~~~ 492 (533)
|.|++..+.++--.....
T Consensus 806 RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 806 RIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HhcCcceeEEEEeecCCc
Confidence 999987766655444333
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.41 E-value=8.6e-12 Score=133.41 Aligned_cols=314 Identities=19% Similarity=0.234 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCC
Q 009494 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPF 239 (533)
Q Consensus 160 p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~ 239 (533)
|+=-|.+-.+.....-++-+.||-|||+++.+|+.-..+. |..+.+++...-||.--.+++..+...+|+
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----------gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----------GKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----------CCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 4444455555556667899999999999999999766543 556889999999999888999999999999
Q ss_pred eEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhh----------c---
Q 009494 240 KTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ----------R--- 299 (533)
Q Consensus 240 ~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~----------~--- 299 (533)
.+.+...+.+..+.... -.++|..+|-..| .++++.+ ......+.+.|+||+|.++= .
T Consensus 151 svG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~ 228 (822)
T COG0653 151 SVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAE 228 (822)
T ss_pred ceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccc
Confidence 99999998876664433 3489999998877 4444432 12245688999999998651 1
Q ss_pred ---CcHHHHHHHHHhC---------CCCcEEEEecc--------------------------------------------
Q 009494 300 ---GFRDQVMQIFRAI---------SLPQILMYSAT-------------------------------------------- 323 (533)
Q Consensus 300 ---~~~~~~~~i~~~~---------~~~q~l~~SAT-------------------------------------------- 323 (533)
.....+..+...+ ...+.+.+|-.
T Consensus 229 ~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIV 308 (822)
T COG0653 229 DSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIV 308 (822)
T ss_pred cCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEE
Confidence 1122333333222 11122222221
Q ss_pred -----------------------------------------------------------------CCHHHHHHHHhhCCC
Q 009494 324 -----------------------------------------------------------------ISQEVEKMSSSISKD 338 (533)
Q Consensus 324 -----------------------------------------------------------------~~~~~~~l~~~~~~~ 338 (533)
...+...+...+.-.
T Consensus 309 rd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~ 388 (822)
T COG0653 309 RDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD 388 (822)
T ss_pred ecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc
Confidence 111112222222222
Q ss_pred eEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCH
Q 009494 339 IVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPM 418 (533)
Q Consensus 339 ~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~ 418 (533)
.+.+....+..+.+ .....+.....|...+++.+......+.|+||-..+.+.++.+++.|. ..|++..+++..-..
T Consensus 389 vv~iPTnrp~~R~D--~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~-~~~i~h~VLNAk~h~ 465 (822)
T COG0653 389 VVVIPTNRPIIRLD--EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLR-KAGIPHNVLNAKNHA 465 (822)
T ss_pred eeeccCCCcccCCC--CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHH-hcCCCceeeccccHH
Confidence 22222222221111 122334455667778888888877889999999999999999999998 889998888888775
Q ss_pred HHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc-----------EEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 419 KERREIMRSFLVGEVPVIVATGILGRGVELLGVR-----------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 419 ~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~-----------~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
.+-+.+-+.-..| -|-|||++++||-||.--. +||--.--.|-.--.|--||+||.|.+|.+..|++
T Consensus 466 ~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 466 REAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 5544444433333 3789999999999986333 24433334444445588899999999998888887
Q ss_pred CcC
Q 009494 488 EEN 490 (533)
Q Consensus 488 ~~~ 490 (533)
-.|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 543
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.40 E-value=2.8e-11 Score=128.73 Aligned_cols=289 Identities=16% Similarity=0.257 Sum_probs=176.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
-.+|.||+|||||.+. +..+...+. ....++|+++.+++|+.+....++...-. ++....-.++.....
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~--------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~- 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALK--------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG- 119 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhcc--------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc-
Confidence 3688999999999864 444444322 35677999999999999988887754321 222221111111110
Q ss_pred HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHH------HHHHHHhC--CCCcEEEEeccCC
Q 009494 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ------VMQIFRAI--SLPQILMYSATIS 325 (533)
Q Consensus 254 ~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~------~~~i~~~~--~~~q~l~~SAT~~ 325 (533)
...+-+++..+.|.++. .-.+.++++||+||+-..+..=|.+. +..++..+ ....+|++-|++.
T Consensus 120 -----~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 -----RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -----cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 12466777777775443 22467799999999997765433222 22222222 5778999999999
Q ss_pred HHHHHHHHhhCCCe-EEEEeCC---CCCCCcCceEE-------------------------------EEEecchhHHHHH
Q 009494 326 QEVEKMSSSISKDI-VVVSVGK---PNMPNKAVKQL-------------------------------AIWVESNKKKQKL 370 (533)
Q Consensus 326 ~~~~~l~~~~~~~~-~~i~~~~---~~~~~~~v~~~-------------------------------~~~~~~~~k~~~l 370 (533)
....++...+.... +.+..+. .+.......-. .............
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 99999888875432 2222211 00000000000 0000000112234
Q ss_pred HHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 009494 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
+..|......+.++-||+++...++.+++... .....+..++|..+..+.+ . =++.+|++-|+++.-|+++-.
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~-~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCA-RFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHH-hcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccch
Confidence 45555555667889999999999999999887 6688888888877655321 1 257889999999999999864
Q ss_pred c--cEEEEc--CCCC--CHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 451 V--RQVIIF--DMPN--SIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 451 v--~~VI~~--d~p~--s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
. +-|.-| .... ++....|++||+.... ....+++++..
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 3 333333 2222 3445789999997653 56777777643
No 162
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.6e-11 Score=122.56 Aligned_cols=343 Identities=16% Similarity=0.218 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHHHHhCCCcEEE-EccCCCch--hHHHHHHHHHHHhhhhhcccC---------------------CCCCc
Q 009494 156 DMPTPVQMQAIPSALSGKSLLV-SANTGSGK--TASFLVPVISQCANIRLHHSQ---------------------NQKNP 211 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv-~a~TGsGK--T~~~llp~l~~l~~~~~~~~~---------------------~~~~~ 211 (533)
..+|+.|.+.+..+.+.+|++. ....+.|+ +-.|++.+++|+++.+..... .-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4689999999999999999876 33334555 566899999998765322111 12458
Q ss_pred eEEEEcccHHHHHHHHHHHHHHcCCCCC---------eEEEEEcCcc--------hHHHH--------------------
Q 009494 212 LAMVLTPTRELCIQVEEQAKLLGKGLPF---------KTALVVGGDA--------MARQV-------------------- 254 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~---------~~~~~~gg~~--------~~~~~-------------------- 254 (533)
++|||+|+|+-|-.+...+..+..+..- +...-++|.+ .++..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999988887776443221 1112222210 11111
Q ss_pred --HHH---HcCCceeecCHHHHHHHHHcC-----C-CCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC----------
Q 009494 255 --YRI---QQGVELIVGTPGRLIDLLMKH-----D-IELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS---------- 313 (533)
Q Consensus 255 --~~l---~~~~~Iii~Tp~~l~~~l~~~-----~-~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~---------- 313 (533)
.++ ....+|+||+|=-|.-++... . -.++.+.++|||-||.|+..+ +..+..|+.++.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCC
Confidence 111 134789999998886666532 1 137889999999999988766 566778888771
Q ss_pred ---------------CCcEEEEeccCCHHHHHHHHhhCCCeEE----E---EeCCCCCCCcCceEEEEEec-------ch
Q 009494 314 ---------------LPQILMYSATISQEVEKMSSSISKDIVV----V---SVGKPNMPNKAVKQLAIWVE-------SN 364 (533)
Q Consensus 314 ---------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~----i---~~~~~~~~~~~v~~~~~~~~-------~~ 364 (533)
.+|+++||+-..+.+..+...++.+.-- - ..+.-....-.+.|.+..+. .+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 1378888887776666655544433211 0 00011111111222221111 11
Q ss_pred hHHHHHHHHHh-hcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 365 KKKQKLFDILM-SKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 365 ~k~~~l~~~l~-~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
.+.......+. +.. ....-+|||.+|.-.-.++.++++ ...+....+|.-.++..-.++...|..|..+||+-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K-~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMK-KEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhh-hhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 23333333222 211 112357999999999999999998 556888888888888888888899999999999999854
Q ss_pred --cccCCCCCccEEEEcCCCCCHhHH---HHhhccccCCC----CccEEEEEecCcCHHHHHHHHHH
Q 009494 443 --GRGVELLGVRQVIIFDMPNSIKEY---VHQIGRASQMG----DEGTAIVFVNEENKNLFQELVDI 500 (533)
Q Consensus 443 --~~Gldi~~v~~VI~~d~p~s~~~y---~qriGR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~ 500 (533)
-+-.++.+|..||+|.+|..+.-| +.+++|+.-.| ..-.|.++++.-|.-.+..++-.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 577899999999999999988766 55666654333 23578888888777666665543
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.35 E-value=1.7e-11 Score=129.14 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhh---------------------cCCeEEEEeCCCCHHHHHHH
Q 009494 366 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT---------------------TGMKALSIHGEKPMKERREI 424 (533)
Q Consensus 366 k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~---------------------~~~~~~~~h~~~~~~er~~~ 424 (533)
|.-.|+++|.....-+.+.|||..|....+.+..+|... .|.....+.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344677888877777889999999999999999888621 14456788999999999999
Q ss_pred HHHHhcC-CC---cEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 425 MRSFLVG-EV---PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 425 ~~~f~~g-~~---~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
.+.|++- +. -.||+|.+.+-|||+-.++-||+||.-|++.--.|.|=|+-|.|+..-||++--
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 9999874 22 369999999999999999999999999999999999999999999877776543
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.31 E-value=1.2e-11 Score=122.76 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred HHHHHHHHHh-------------CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 161 VQMQAIPSAL-------------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 161 ~Q~~~i~~~~-------------~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
+|.+++..++ ..+.++++.++|+|||+.++..+ ..+.... .......+|||+|. .+..||.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~----~~~~~~~~LIv~P~-~l~~~W~ 74 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALI-SYLKNEF----PQRGEKKTLIVVPS-SLLSQWK 74 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHH-HHHHHCC----TTSS-S-EEEEE-T-TTHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhh-hhhhhcc----ccccccceeEeecc-chhhhhh
Confidence 5777777663 33568999999999998755443 3333311 01112359999999 7779999
Q ss_pred HHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc---CCCCCCCeeEEEEecchhhhhcCcHHH
Q 009494 228 EQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK---HDIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~---~~~~l~~~~~vVvDEah~~~~~~~~~~ 304 (533)
.++.++.....+++....|+..............+++|+|++.+...... ..+.--++++||+||+|.+.+. ...
T Consensus 75 ~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~ 152 (299)
T PF00176_consen 75 EEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSK 152 (299)
T ss_dssp HHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSH
T ss_pred hhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccc
Confidence 99999986545666655555412222222234578999999999711000 0111234999999999999544 344
Q ss_pred HHHHHHhCCCCcEEEEeccCC
Q 009494 305 VMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 305 ~~~i~~~~~~~q~l~~SAT~~ 325 (533)
....+..+.....+++|||+-
T Consensus 153 ~~~~l~~l~~~~~~lLSgTP~ 173 (299)
T PF00176_consen 153 RYKALRKLRARYRWLLSGTPI 173 (299)
T ss_dssp HHHHHHCCCECEEEEE-SS-S
T ss_pred ccccccccccceEEeeccccc
Confidence 455555678889999999963
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.25 E-value=3.7e-11 Score=101.98 Aligned_cols=136 Identities=17% Similarity=0.211 Sum_probs=81.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|+-.++-..+|+|||.-.+--++...+. ++.++|||.|||.++..+.+.++. .+++.....-+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~--- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARM--- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeee---
Confidence 35557889999999998755555555443 567899999999999987776643 33333211111
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC--cHHHHHHHHHhCCCCcEEEEeccCCHHH
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYSATISQEV 328 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~--~~~~~~~i~~~~~~~q~l~~SAT~~~~~ 328 (533)
. ....+.-|-++|.+.+..++.+ .....++++||+||||..-... +...+... .......+|++|||+|...
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHTTS-EEEEEESS-TT--
T ss_pred c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhccCeeEEEEeCCCCCCC
Confidence 0 1124456788999998887766 5567899999999999642211 22222222 3334568999999999754
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.23 E-value=1.9e-09 Score=121.49 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=174.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
+..+|.--||||||++.+- +...+.. ....|.++||+-++.|-.|..+++..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~-------~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLE-------LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHh-------ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHH
Confidence 4689999999999997433 2233332 15678999999999999999999999876532211 2233333
Q ss_pred HHHHHHcC-CceeecCHHHHHHHHHcCC--CCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHH
Q 009494 253 QVYRIQQG-VELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 329 (533)
Q Consensus 253 ~~~~l~~~-~~Iii~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~ 329 (533)
-...+..+ ..|||+|.++|-....... ..-.+==+||+|||||- .++..-..+-..++....++||+|+--.-.
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhccceEEEeeCCcccccc
Confidence 33344433 4899999999977765531 11222336899999983 455555556667788999999999742211
Q ss_pred HH-HHhhCCCeEEEEeCCCCCCCcCc-eEEEEEe------cchh----------------------H-------------
Q 009494 330 KM-SSSISKDIVVVSVGKPNMPNKAV-KQLAIWV------ESNK----------------------K------------- 366 (533)
Q Consensus 330 ~l-~~~~~~~~~~i~~~~~~~~~~~v-~~~~~~~------~~~~----------------------k------------- 366 (533)
.. ........+....-........+ ...+... .... +
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 11112222211111111100000 0000000 0000 0
Q ss_pred --H----HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc----------C--------Ce----EEEEeCCCCH
Q 009494 367 --K----QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT----------G--------MK----ALSIHGEKPM 418 (533)
Q Consensus 367 --~----~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~----------~--------~~----~~~~h~~~~~ 418 (533)
. ..+.+..........++.+.+.++..+..+++...... + .. ....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 0 00111111123344577777888775555554432110 0 00 00001111 2
Q ss_pred HHHHHHHHHH--hcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCC----ccEEEEEecCcCHH
Q 009494 419 KERREIMRSF--LVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD----EGTAIVFVNEENKN 492 (533)
Q Consensus 419 ~er~~~~~~f--~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~----~g~~~~~~~~~~~~ 492 (533)
..+......| .....++||.++++-.|+|.|.+.++ -+|-|.-....+|.+.|+.|.-. .|..+-|.. -..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e 654 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKE 654 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHH
Confidence 2333344443 44678999999999999999988655 45666778889999999999732 255555555 333
Q ss_pred HHHHHHHHHHHcC
Q 009494 493 LFQELVDILKSSG 505 (533)
Q Consensus 493 ~~~~l~~~l~~~~ 505 (533)
-+.+-.+.+...+
T Consensus 655 ~l~~Al~~Y~~~~ 667 (962)
T COG0610 655 ALKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHHhhccc
Confidence 3333333333333
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.16 E-value=5.7e-10 Score=109.51 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++..+...+.. ..+.+++|.++|..+..|...++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHHHHh
Confidence 469999995554 44788999999999999999999998876542110 1234799999999998888777766
Q ss_pred H
Q 009494 233 L 233 (533)
Q Consensus 233 ~ 233 (533)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.16 E-value=5.7e-10 Score=109.51 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++..+...+.. ..+.+++|.++|..+..|...++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHHHHh
Confidence 469999995554 44788999999999999999999998876542110 1234799999999998888777766
Q ss_pred H
Q 009494 233 L 233 (533)
Q Consensus 233 ~ 233 (533)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.10 E-value=5.4e-08 Score=107.00 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=60.0
Q ss_pred CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCC--cc--------EEEEEecCcCHHHHHHHHHHH
Q 009494 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD--EG--------TAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~--~g--------~~~~~~~~~~~~~~~~l~~~l 501 (533)
..+.|++.+++.+|.|-|++-++.-+.-..|...-.|.+||.-|.-- .| .-.++.+.+...++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 56799999999999999999999999988889899999999988621 12 234455778888999999888
Q ss_pred HHc
Q 009494 502 KSS 504 (533)
Q Consensus 502 ~~~ 504 (533)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 775
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.01 E-value=6.1e-09 Score=99.59 Aligned_cols=130 Identities=20% Similarity=0.254 Sum_probs=98.7
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+ .|++.|..++-.+..|+ |+...||-|||++..+|++...+. |..+-|++.+..||..=++++..
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------G~~V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------GKGVHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT----------SS-EEEEESSHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh----------cCCcEEEeccHHHhhccHHHHHH
Confidence 344 78999999887776665 999999999999998888777654 66788999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhh
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCML 297 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~ 297 (533)
+...+|+.+..+.++.+........ .++|+++|...+ .++|+.+- .....+.++||||+|.++
T Consensus 141 ~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 141 FYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999988765433333 368999999988 45565421 125678999999999876
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.85 E-value=6.7e-08 Score=100.72 Aligned_cols=109 Identities=14% Similarity=0.254 Sum_probs=89.8
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc-----------------CCeEEEEeCCCCHHHHHHHHHHHhcC-CC--cEEEEc
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT-----------------GMKALSIHGEKPMKERREIMRSFLVG-EV--PVIVAT 439 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~-----------------~~~~~~~h~~~~~~er~~~~~~f~~g-~~--~VLvaT 439 (533)
.+.++|||..+....+.+.+.|.+.. +.....+.|..+..+|++.+++|++. .+ -++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 35689999999999999888886321 12234578888899999999999873 22 468899
Q ss_pred ccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecC
Q 009494 440 GILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~ 488 (533)
.....|+|+-..+-+|+||.-|++..-.|.+-|+-|.|+...|+++---
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlV 846 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLV 846 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeeh
Confidence 9999999999999999999999999999999999999999888887543
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.85 E-value=2.9e-08 Score=105.03 Aligned_cols=310 Identities=16% Similarity=0.211 Sum_probs=181.8
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCCCeE
Q 009494 163 MQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFKT 241 (533)
Q Consensus 163 ~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~~~ 241 (533)
..++.++...+-+++-+.||.|||..+.--++..++... .+....+.+..|+|-.+..+.+.+. +-....+-.+
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-----~g~~~na~v~qprrisaisiaerva~er~e~~g~tv 458 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-----NGASFNAVVSQPRRISAISLAERVANERGEEVGETC 458 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-----ccccccceeccccccchHHHHHHHHHhhHHhhcccc
Confidence 344555556777899999999999998888888776532 2333447777799877776555432 2222222111
Q ss_pred EEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC----CCCcE
Q 009494 242 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI----SLPQI 317 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~----~~~q~ 317 (533)
+.-..-.+... ..---|+.||-+-+++.+.... ..+.++|+||.|..--. ...+..+++.+ +....
T Consensus 459 gy~vRf~Sa~p-----rpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 459 GYNVRFDSATP-----RPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred ccccccccccc-----ccccceeeeccchhhhhhhhcc---cccccccchhhhhhccc--hHHHHHHHHhhhccchhhhh
Confidence 11111111111 1114688999999988887643 56788999999953211 22333333333 44455
Q ss_pred EEEeccCCHHH--------------------HHHHHh-hCCCeEEEEeCCCCCC--------CcCc----eEEE------
Q 009494 318 LMYSATISQEV--------------------EKMSSS-ISKDIVVVSVGKPNMP--------NKAV----KQLA------ 358 (533)
Q Consensus 318 l~~SAT~~~~~--------------------~~l~~~-~~~~~~~i~~~~~~~~--------~~~v----~~~~------ 358 (533)
+++|||+.... +.+... +......+........ .... +..-
T Consensus 529 ~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 55565543211 111111 1111111000000000 0000 0000
Q ss_pred ---------EEecchhHHHHHHHHHhhc---cCCCCCeEEEEcchhhHHHHHHHHHh------hcCCeEEEEeCCCCHHH
Q 009494 359 ---------IWVESNKKKQKLFDILMSK---QHFTPPAVVYVGSRLGADLLSNAISV------TTGMKALSIHGEKPMKE 420 (533)
Q Consensus 359 ---------~~~~~~~k~~~l~~~l~~~---~~~~~~~LVf~~s~~~a~~l~~~L~~------~~~~~~~~~h~~~~~~e 420 (533)
....+......|.+.+... ..-.+-++||.+--.....|..+|.. ...+++...|+.....+
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~e 688 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQE 688 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHh
Confidence 0000011111233332221 12235789999998888888888752 22467888999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC------------------CCCHhHHHHhhccccCCCCccEE
Q 009494 421 RREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGTA 482 (533)
Q Consensus 421 r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~------------------p~s~~~y~qriGR~gR~g~~g~~ 482 (533)
..++.+....|..+++++|.++...+.+-++..||+.+. -.|....+||-||+||. +.|.|
T Consensus 689 qrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~ 767 (1282)
T KOG0921|consen 689 QRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFC 767 (1282)
T ss_pred hhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccc
Confidence 999999999999999999999999999988888877442 12556779999999996 68888
Q ss_pred EEEecC
Q 009494 483 IVFVNE 488 (533)
Q Consensus 483 ~~~~~~ 488 (533)
+.+++.
T Consensus 768 f~lcs~ 773 (1282)
T KOG0921|consen 768 FHLCSR 773 (1282)
T ss_pred ccccHH
Confidence 888763
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.77 E-value=2e-09 Score=115.72 Aligned_cols=260 Identities=13% Similarity=0.136 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 157 MPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
...|.|.+.+.... ...++++.+|||+|||++|.++++..+.. ..+.++++++|-.+|...-.+.+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~--------~p~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY--------YPGSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--------CCCccEEEEcCCchhhcccccchhhhcc
Confidence 55677777775555 45678999999999999999998876544 4567899999999998875555554333
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc--CCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI- 312 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~--~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~- 312 (533)
.-|++++-+.|...... .. ...++++|+||+++..+.+. ..-.+.+++.+|+||.|++.+ ++++.++.+....
T Consensus 999 ~~g~k~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMN 1074 (1230)
T ss_pred cCCceeEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccc
Confidence 33788888887655431 12 24589999999999887763 444588999999999998764 4455555554443
Q ss_pred -------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc-------hhHHHHHHHHHhhcc
Q 009494 313 -------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES-------NKKKQKLFDILMSKQ 378 (533)
Q Consensus 313 -------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~-------~~k~~~l~~~l~~~~ 378 (533)
+..+.+++|.-+. ...+++.|+..... ....+...+......+...+. .....-.+..+.. .
T Consensus 1075 ~~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~--~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~-~ 1150 (1230)
T KOG0952|consen 1075 YISSQTEEPVRYLGLSTALA-NANDLADWLNIKDM--YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKT-H 1150 (1230)
T ss_pred cCccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc--CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhc-C
Confidence 2345666654433 35677777655443 111122222222222221111 1111222333333 3
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHHHHhcCCCc
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVP 434 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~~~---~~~~~~~h~~~~~~er~~~~~~f~~g~~~ 434 (533)
....|+|||+.++.....-+..|-... .-+...++.+ ..+-+.++...+....+
T Consensus 1151 sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1151 SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 456799999999876554444332111 2233344444 55666677666655544
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.70 E-value=1.6e-06 Score=92.12 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=61.3
Q ss_pred CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCC--CccE-----------EEEEecCcCHHHHHHHH
Q 009494 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG--DEGT-----------AIVFVNEENKNLFQELV 498 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g--~~g~-----------~~~~~~~~~~~~~~~l~ 498 (533)
-.+.|++-.++-+|.|-|+|=+++-.....|...=.|.+||+-|.. +.|. -.++++..++.+...|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999862 2333 34567788899999998
Q ss_pred HHHHHc
Q 009494 499 DILKSS 504 (533)
Q Consensus 499 ~~l~~~ 504 (533)
+-++..
T Consensus 563 kEI~~~ 568 (985)
T COG3587 563 KEINDE 568 (985)
T ss_pred HHHHHh
Confidence 888774
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.61 E-value=1.5e-07 Score=101.20 Aligned_cols=119 Identities=22% Similarity=0.251 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhhccCCC-CCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC-CcE-EEEccc
Q 009494 365 KKKQKLFDILMSKQHFT-PPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE-VPV-IVATGI 441 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~-~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~-~~V-LvaT~~ 441 (533)
.+...++.++....... ++++||+.-...+..+...|. ..++....+.|.|+...|...+..|..+. ..| +++...
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~-~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLF-FKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhh-hcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 33444455554332222 489999999999999998888 77888899999999999999999999653 334 678889
Q ss_pred ccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEE
Q 009494 442 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
.+-|+++..+.+|+..|+-|++..--|.+-|+.|.|+.-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999999866655
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.53 E-value=3e-06 Score=93.37 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=53.2
Q ss_pred cCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccC
Q 009494 259 QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATI 324 (533)
Q Consensus 259 ~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~ 324 (533)
....|+++||..|..-+..+.+.+..+..|||||||++....-...+.++...- +..-+.+|||++
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 346899999999988888888999999999999999997665556666665543 566788999984
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.36 E-value=2.7e-06 Score=80.92 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 158 PTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+++-|.+|+..++.... .+|.||+|+|||.+ +..++..+..... ......+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57899999999999888 99999999999964 3334444421000 00125678899999999999988887776
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.31 E-value=1.1e-05 Score=77.60 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----------CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCC
Q 009494 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL----------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~----------~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
+.||+.++.. ..++..|.+++-... .+...++-..||.||.-...--++..++. .
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---------G 90 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---------G 90 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------C
Confidence 4677765542 246788988886654 23457889999999997666556666654 2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC---CCC-----
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH---DIE----- 281 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~---~~~----- 281 (533)
..++|+++.+..|-....+.++.++.. .+.+..+..-.. .. ...-.-.|+++|+..|..-.... ...
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~-~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY-GD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc-Cc---CCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 456999999999999988888887654 233222221000 00 01113469999999987765321 111
Q ss_pred ----CCCeeEEEEecchhhhhcCc--------HHHHHHHHHhCCCCcEEEEeccCCHHHHHH
Q 009494 282 ----LDDIRMFVLDEVDCMLQRGF--------RDQVMQIFRAISLPQILMYSATISQEVEKM 331 (533)
Q Consensus 282 ----l~~~~~vVvDEah~~~~~~~--------~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l 331 (533)
-..=.+||+||||.+.+..- ...+..+-..++..+++..|||...+..++
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNM 227 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCcee
Confidence 12234899999999876532 235556667789999999999987765544
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.19 E-value=1.6e-05 Score=73.73 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=96.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALS---GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.|+....|..++=.+... -..+|.|.+....+.+ |+|.+.+.-+|.|||.+ ++|++..++. +....
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA--------dg~~L 72 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA--------DGSRL 72 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc--------CCCcE
Confidence 455566677766544432 3578999999988884 67899999999999987 7898888775 44566
Q ss_pred EEEEcccHHHHHHHHHHHHH-HcCCCCCeEEE--EEcCcch----HHHHH----HHHcCCceeecCHHHHHHHHHcC---
Q 009494 213 AMVLTPTRELCIQVEEQAKL-LGKGLPFKTAL--VVGGDAM----ARQVY----RIQQGVELIVGTPGRLIDLLMKH--- 278 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~-~~~~~~~~~~~--~~gg~~~----~~~~~----~l~~~~~Iii~Tp~~l~~~l~~~--- 278 (533)
+.+++|. +|..|....+.. ++.-++-++.. ....... ...+. .......|+++||+.++.+.-..
T Consensus 73 vrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 73 VRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 8888886 788998888774 43322322211 1111111 11111 22344579999999986654321
Q ss_pred ----CC-----------CCCCeeEEEEecchhhhh
Q 009494 279 ----DI-----------ELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 279 ----~~-----------~l~~~~~vVvDEah~~~~ 298 (533)
.. .+.+...=|+||+|..+.
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 133455579999998765
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.16 E-value=6e-06 Score=74.32 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=76.7
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccCCCCC--ccE
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG--ILGRGVELLG--VRQ 453 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~---~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~--~~~~Gldi~~--v~~ 453 (533)
.+.+|||++|....+.+.+.+.... ++. .+..+ ..++..+++.|+.+.-.||+++. .+.+|+|+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~--v~~q~--~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIP--VFVQG--SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSC--EEEST--CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccce--eeecC--cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 4689999999999999999987322 232 23332 44788999999999999999998 9999999996 778
Q ss_pred EEEcCCCC----CH--------------------------hHHHHhhccccCCCCccEEEEEecCc--CHHHHHHHHHHH
Q 009494 454 VIIFDMPN----SI--------------------------KEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDIL 501 (533)
Q Consensus 454 VI~~d~p~----s~--------------------------~~y~qriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l 501 (533)
||...+|. ++ ....|.+||+-|..+.--++++++++ ...+...+.+.|
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R~~~~~y~~~l~~~l 164 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSRFLSKRYGKYLPKWL 164 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGGGGGHHHHHH-T---
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCccccchhhhcCcccc
Confidence 99988774 11 12368899999987776666677764 333444444444
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=8.1e-06 Score=75.54 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 157 MPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
++++-|.+++..++.+. -.++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~~--- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA---------AGKRVIGLAPTNKAAKELREKTG--- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhhC---
Confidence 36788999999997443 467789999999985 3334444332 35779999999888776555411
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC----CCCCCeeEEEEecchhhhhcCcHHHHHHHHH
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD----IELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 310 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~----~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~ 310 (533)
+-..|..+++....... ..+...++|||||+-.+. ...+..++.
T Consensus 68 ----------------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~ 115 (196)
T PF13604_consen 68 ----------------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLR 115 (196)
T ss_dssp ----------------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHH
T ss_pred ----------------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHH
Confidence 11122222211111100 115566799999999764 455666666
Q ss_pred hCCC--CcEEEEecc
Q 009494 311 AISL--PQILMYSAT 323 (533)
Q Consensus 311 ~~~~--~q~l~~SAT 323 (533)
.... .++|++.-+
T Consensus 116 ~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 116 LAKKSGAKLILVGDP 130 (196)
T ss_dssp HS-T-T-EEEEEE-T
T ss_pred HHHhcCCEEEEECCc
Confidence 6633 566666543
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.13 E-value=6.6e-06 Score=75.72 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.++-|..++.+++...-+++.||.|+|||+.++..++..+.. +...+++|+-|..+.
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--------GEYDKIIITRPPVEA 61 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--------TS-SEEEEEE-S--T
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--------CCCcEEEEEecCCCC
Confidence 478899999999988889999999999999988888877764 455678888887653
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.09 E-value=1.9e-05 Score=80.22 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=68.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
-++|.|.+|||||++++- ++..+. ....+..+++++++..|...+.+.+..-..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~-------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQ-------NSEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------ 56 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhh-------ccccCCceEEEEecchHHHHHHHHHhhhcc------------------
Confidence 368999999999997443 333331 124567799999999998877776654320
Q ss_pred HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-------cHHHHHHHHHh
Q 009494 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-------FRDQVMQIFRA 311 (533)
Q Consensus 254 ~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-------~~~~~~~i~~~ 311 (533)
.......+..+..+.............+++|||||||++...+ ...++..++..
T Consensus 57 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 ----PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001233444444444333233456789999999999998732 24666666665
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.05 E-value=1.5e-05 Score=82.67 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=64.6
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009494 149 NIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 149 ~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
++...|+.+++.-|..|+.++++..-.||++|+|+|||.+..- ++-++.. .....+|+++|+.-.+.|+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~--------~~~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR--------QHAGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHH--------hcCCceEEEcccchhHHHHHH
Confidence 4555678889999999999999999999999999999987543 4444443 245669999999988888888
Q ss_pred HHHHHcCCCCCeEEEEE
Q 009494 229 QAKLLGKGLPFKTALVV 245 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (533)
.+.+- +++++-+.
T Consensus 473 KIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 473 KIHKT----GLKVVRLC 485 (935)
T ss_pred HHHhc----CceEeeee
Confidence 77664 35555433
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.84 E-value=0.00015 Score=78.92 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
..+++.|..|+..++.. ...+|.||+|+|||.+. ..++.++.. .+.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46789999999998876 67889999999999753 444444432 355899999999998888777665
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.82 E-value=0.00033 Score=66.42 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
++.-.+..|...+.++..+..+++.|++|+|||+.+....+..+.. +.-.+++|.=|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~--------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH--------KDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc--------CCeeEEEEeCCCCC
Confidence 3444578899999999888889999999999999876666655543 22344666666643
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.82 E-value=4.6e-05 Score=78.74 Aligned_cols=63 Identities=27% Similarity=0.389 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
.+.+-|..|+......++ .++.||+|+|||.+ +.-++.++.. .+.++||++||.+-+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk---------~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVK---------QKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHH---------cCCeEEEEcCchHHHHHHHHH
Confidence 567889999999887755 67899999999987 4445555543 467899999999888877664
No 188
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.00012 Score=75.36 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=81.0
Q ss_pred EEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCC----CeEEEEEcCcchH-
Q 009494 177 VSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP----FKTALVVGGDAMA- 251 (533)
Q Consensus 177 v~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~----~~~~~~~gg~~~~- 251 (533)
..++||||||++..-.++.. .. ......|+.|..-....... ..|..... +.-...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~-y~--------kgyr~flffvnq~nilekt~---~nftd~~s~kylf~e~i~~~d~~i~i 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YK--------KGYRNFLFFVNQANILEKTK---LNFTDSVSSKYLFSENININDENIEI 69 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HH--------hchhhEEEEecchhHHHHHH---hhcccchhhhHhhhhhhhcCCceeee
Confidence 35789999999865555543 33 22334677776655544322 22221110 0111111111110
Q ss_pred ---HHHHHHHcCCceeecCHHHHHHHHHcCC---C---CCCCeeE-EEEecchhhhhc-------------CcHHHHHHH
Q 009494 252 ---RQVYRIQQGVELIVGTPGRLIDLLMKHD---I---ELDDIRM-FVLDEVDCMLQR-------------GFRDQVMQI 308 (533)
Q Consensus 252 ---~~~~~l~~~~~Iii~Tp~~l~~~l~~~~---~---~l~~~~~-vVvDEah~~~~~-------------~~~~~~~~i 308 (533)
.....-..+.+|.++|.+.|...+.+.. + ++.+..+ ++-||||++-.. .+...+...
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 0001123457899999999977665532 2 2444444 567999998632 244444444
Q ss_pred HHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEe
Q 009494 309 FRAISLPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 309 ~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 344 (533)
++.-++.-++.+|||.|. -......+- +.+++..
T Consensus 150 ~~~nkd~~~lef~at~~k-~k~v~~ky~-dkiv~~y 183 (812)
T COG3421 150 LEQNKDNLLLEFSATIPK-EKSVEDKYE-DKIVVTY 183 (812)
T ss_pred HhcCCCceeehhhhcCCc-cccHHHHhc-cceEEee
Confidence 555567778889999994 333333333 3344443
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.77 E-value=0.00037 Score=75.18 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
.++|+.|+...+.++-.+|.|++|+|||.+ +..++..+... ......++++++||..-|..+.+........++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~-----~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQL-----ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHh-----cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 589999999999999999999999999985 23333333221 012345788999999888887776654433322
Q ss_pred CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHH------HcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL------MKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l------~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
+. . ........-..|..+|+... ..+..+...+++|||||+-.+ + ...+..+++.+
T Consensus 228 ~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al 289 (615)
T PRK10875 228 LT-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDAL 289 (615)
T ss_pred cc-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhc
Confidence 10 0 00111111233444443221 111223445789999999954 2 45566677777
Q ss_pred C-CCcEEEEecc
Q 009494 313 S-LPQILMYSAT 323 (533)
Q Consensus 313 ~-~~q~l~~SAT 323 (533)
+ ..++|++.-.
T Consensus 290 ~~~~rlIlvGD~ 301 (615)
T PRK10875 290 PPHARVIFLGDR 301 (615)
T ss_pred ccCCEEEEecch
Confidence 4 4567766543
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.76 E-value=0.00044 Score=74.43 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
..+|+.++..++.++-.++.|++|+|||.+ +..++..+..... ...+.++++.+||---|..+.+........++
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~----~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP----KQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc----ccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 379999999999999999999999999985 3333333332110 01135799999998888877766554332221
Q ss_pred CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHH------cCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~------~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
.. . .......+-..|..+|+.... .+.-+...+++|||||+-.+. ...+..+++.+
T Consensus 222 ~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al 283 (586)
T TIGR01447 222 AA-----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKAL 283 (586)
T ss_pred cc-----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhc
Confidence 10 0 001111222344444433211 112234468999999999543 45566777777
Q ss_pred C-CCcEEEEecc
Q 009494 313 S-LPQILMYSAT 323 (533)
Q Consensus 313 ~-~~q~l~~SAT 323 (533)
+ ..++|++.-.
T Consensus 284 ~~~~rlIlvGD~ 295 (586)
T TIGR01447 284 PPNTKLILLGDK 295 (586)
T ss_pred CCCCEEEEECCh
Confidence 4 5566666543
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.74 E-value=0.00026 Score=76.26 Aligned_cols=139 Identities=18% Similarity=0.285 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHH---HHHhhhh------hcc-------cC----------
Q 009494 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVI---SQCANIR------LHH-------SQ---------- 206 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l---~~l~~~~------~~~-------~~---------- 206 (533)
+|+|.|...+..++ ...+.++..|||+|||++.+-..+ +++.... ... ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999998777766 567899999999999987543333 3332100 000 00
Q ss_pred CC------CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcC---------------------------------
Q 009494 207 NQ------KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG--------------------------------- 247 (533)
Q Consensus 207 ~~------~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg--------------------------------- 247 (533)
.. ..|++.+-+-|..-..|+.+++++..-. .+...+-+.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 00 1467778778877778888888876433 222211110
Q ss_pred --------------cc--hHH---------------HHHHHHcCCceeecCHHHHHHHHHcCC--CCCCCeeEEEEecch
Q 009494 248 --------------DA--MAR---------------QVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVD 294 (533)
Q Consensus 248 --------------~~--~~~---------------~~~~l~~~~~Iii~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah 294 (533)
.. ..+ -...+...++||+|-+..|++-..++. +++++ ..||+||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 00 000 112334457899999999988776654 45543 689999999
Q ss_pred hhhh
Q 009494 295 CMLQ 298 (533)
Q Consensus 295 ~~~~ 298 (533)
.|-+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8764
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=97.67 E-value=0.0002 Score=55.00 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=35.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
+.-++|.||+|||||...+ .++..+.... ... +.++|+++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLA-ARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3345669999999997543 3334433210 112 677999999999999877766
No 193
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.60 E-value=3.5e-06 Score=89.83 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhc---CCCcEEEEcccc
Q 009494 366 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV---GEVPVIVATGIL 442 (533)
Q Consensus 366 k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~---g~~~VLvaT~~~ 442 (533)
|+..|..++......+++++||.......+.+..++. ..+ ....+.|.....+|...+..|+. .++..|.+|...
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~-~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLT-YEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHh-ccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 4445566666677788999999999999999999998 556 77889999999999999999984 356688999876
Q ss_pred ccc
Q 009494 443 GRG 445 (533)
Q Consensus 443 ~~G 445 (533)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.56 E-value=0.0013 Score=72.93 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
..+++-|.+|+..+..++-+++.|++|+|||.+. -.++..+... +....+++++||-.-|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-------GGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCceEEEEeCchHHHHHHH
Confidence 4789999999999998889999999999999852 3333333220 11256888999977776443
No 195
>PRK08116 hypothetical protein; Validated
Probab=97.43 E-value=0.0033 Score=61.14 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCeeEEEEecchh--hhhcCcHHHHHHHHHhC--CCCcEEEEeccCCHHHH
Q 009494 283 DDIRMFVLDEVDC--MLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 283 ~~~~~vVvDEah~--~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~ 329 (533)
.+.++|||||++. ..++. ...+..|+... ...++|+.|...|.++.
T Consensus 177 ~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 177 VNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4567899999963 33322 34455555543 45667777776666543
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.42 E-value=0.0028 Score=70.57 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 157 MPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+++-|.+++..++.+ +-+++.|++|+|||.+ +- .+..++. ..+..+++++||--.+..+.+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~-~i~~~~~--------~~g~~V~~~ApTg~Aa~~L~~~------ 415 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LK-AAREAWE--------AAGYRVIGAALSGKAAEGLQAE------ 415 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HH-HHHHHHH--------hCCCeEEEEeCcHHHHHHHHhc------
Confidence 5899999999998874 5678999999999974 22 3333332 2367799999996665544321
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--C
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S 313 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~ 313 (533)
.++.. .|..++..-.......+...++|||||+-.+... .+..++... .
T Consensus 416 -~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~ 466 (744)
T TIGR02768 416 -SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEA 466 (744)
T ss_pred -cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhc
Confidence 12211 1222221111222334567899999999976433 333444422 3
Q ss_pred CCcEEEEe
Q 009494 314 LPQILMYS 321 (533)
Q Consensus 314 ~~q~l~~S 321 (533)
..++|++.
T Consensus 467 ~~kliLVG 474 (744)
T TIGR02768 467 GAKVVLVG 474 (744)
T ss_pred CCEEEEEC
Confidence 55666665
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.40 E-value=0.0031 Score=71.44 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 157 MPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+++-|.+++..++.+++ +++.|..|+|||.+ +-.+.. +.. ..+..++.++||--.+..+.+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~-~~e--------~~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVARE-AWE--------AAGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHH-HHH--------HcCCeEEEecCcHHHHHHHhh-------
Confidence 689999999999998654 68899999999985 333333 322 246779999999666543322
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--C
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S 313 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~ 313 (533)
..++.. .|..+|+.-...+...+...++|||||+-.+.. .++..++... .
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~ 460 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADA 460 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhC
Confidence 112110 122233221122333466778999999996643 3445555543 4
Q ss_pred CCcEEEEecc
Q 009494 314 LPQILMYSAT 323 (533)
Q Consensus 314 ~~q~l~~SAT 323 (533)
..++|++.-+
T Consensus 461 garvVLVGD~ 470 (988)
T PRK13889 461 GAKVVLVGDP 470 (988)
T ss_pred CCEEEEECCH
Confidence 5677776654
No 198
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.28 E-value=0.00037 Score=66.48 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=39.6
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhh
Q 009494 129 AVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCAN 199 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~ 199 (533)
.+|..+.+|+++++|+-+.+.+..- ..=++|.+|||||||.+ +.+++.++..
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 5788999999999998887633211 12289999999999986 6777877755
No 199
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.24 E-value=0.0014 Score=63.02 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCC--------CccEEEEcCCCCCHhHHHHhhccccCCCCc-cEEEEEecC---cC
Q 009494 423 EIMRSFLVGEVPVIVATGILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GTAIVFVNE---EN 490 (533)
Q Consensus 423 ~~~~~f~~g~~~VLvaT~~~~~Gldi~--------~v~~VI~~d~p~s~~~y~qriGR~gR~g~~-g~~~~~~~~---~~ 490 (533)
...+.|.+|+..|+|-++.++.|+-+- .-++-|...+|||.+..+|..||+.|.|+. .-.+.++.. -+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 456789999999999999999999765 345677889999999999999999999984 444555543 37
Q ss_pred HHHHHHHHHHHHHcCCc
Q 009494 491 KNLFQELVDILKSSGAV 507 (533)
Q Consensus 491 ~~~~~~l~~~l~~~~~~ 507 (533)
+++...+.+.|++.|.-
T Consensus 132 ~Rfas~va~rL~sLgAl 148 (278)
T PF13871_consen 132 RRFASTVARRLESLGAL 148 (278)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 88889999999887653
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.23 E-value=0.0011 Score=66.13 Aligned_cols=123 Identities=23% Similarity=0.177 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+...+ ....++|++++|+..+..+.+.+.......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 46789999987 7788999999999999975544444333311 234569999999999999888887754321
Q ss_pred CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc-CCCCC-CCeeEEEEecch
Q 009494 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIEL-DDIRMFVLDEVD 294 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~-~~~~l-~~~~~vVvDEah 294 (533)
.... ...............+.|+|...+..-+-+ ..... -.-.+-++|+..
T Consensus 73 ~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 73 QQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 1000 000011122223467889999888554432 21111 112346677766
No 201
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.19 E-value=0.00094 Score=74.61 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhh--------hhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEE
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANI--------RLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTA 242 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~--------~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~ 242 (533)
.|++++++...|+|||..-+...+...-.. ..........+..|||+|. ++..||.+++.+..... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 356789999999999987555444332110 0000111234568999998 66699999999988764 6777
Q ss_pred EEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC--------------C----CCC--eeEEEEecchhhhhcCcH
Q 009494 243 LVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI--------------E----LDD--IRMFVLDEVDCMLQRGFR 302 (533)
Q Consensus 243 ~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~--------------~----l~~--~~~vVvDEah~~~~~~~~ 302 (533)
.+.|-...........-.+|||++|+..|..-+..... + |-. +=-|++|||+.+-. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 66663221111112223589999999999665543211 0 111 22389999996533 46
Q ss_pred HHHHHHHHhCCCCcEEEEeccCCHHH
Q 009494 303 DQVMQIFRAISLPQILMYSATISQEV 328 (533)
Q Consensus 303 ~~~~~i~~~~~~~q~l~~SAT~~~~~ 328 (533)
....+.+.+++....-++|+|+-..+
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhhh
Confidence 77888888888899999999965443
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=0.0014 Score=56.03 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=12.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.++.+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3456899999999999853
No 203
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.15 E-value=0.077 Score=65.18 Aligned_cols=237 Identities=10% Similarity=0.132 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+++-|.+++..++.. +-.++.++.|+|||.+ +-.++ .+.. ..+..+++++||..-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~-~~~~--------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLL-HLAS--------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHH-HHHH--------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 5789999999998865 4578899999999984 33333 3332 346789999999876665544321110
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-- 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-- 312 (533)
......+..+.. ..-..|...|+ .....+..-++||||||-.+. ..++..++...
T Consensus 499 -------------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~ 555 (1960)
T TIGR02760 499 -------------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQ 555 (1960)
T ss_pred -------------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhh
Confidence 001111111111 11122333332 222345677899999999664 34455666544
Q ss_pred CCCcEEEEecc--CC-----HHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeE
Q 009494 313 SLPQILMYSAT--IS-----QEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAV 385 (533)
Q Consensus 313 ~~~q~l~~SAT--~~-----~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~L 385 (533)
...++|++.-+ ++ +.+..+.. .......+. ........+ .+.......+...+.+...........++
T Consensus 556 ~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~~l~--~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 556 HNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTYAWV--DTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred cCCEEEEEcChhhcCccccchHHHHHHH-CCCcEEEee--cccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 46788887655 22 22333333 222222211 111111111 11111222333345555545444455699
Q ss_pred EEEcchhhHHHHHHHHHhhc---C------CeEEEEe-CCCCHHHHHHHHHHHhcCC
Q 009494 386 VYVGSRLGADLLSNAISVTT---G------MKALSIH-GEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 386 Vf~~s~~~a~~l~~~L~~~~---~------~~~~~~h-~~~~~~er~~~~~~f~~g~ 432 (533)
|+..+......|...++... | .....+. ..+++.++... ..|+.|.
T Consensus 631 iv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 99999888888887776332 2 2222332 35677777644 6666664
No 204
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.15 E-value=0.0012 Score=62.81 Aligned_cols=87 Identities=23% Similarity=0.331 Sum_probs=68.1
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCc-chHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGD-AMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
...|.+|||+..-.-|..+.+.++.|... +..++-++.-. ...+++.-+.. ..+|.||||+|+..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 56789999999877777888888777321 23445555544 56677777764 58999999999999999999999999
Q ss_pred eEEEEecchh
Q 009494 286 RMFVLDEVDC 295 (533)
Q Consensus 286 ~~vVvDEah~ 295 (533)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998764
No 205
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.14 E-value=0.0034 Score=68.57 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=84.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
...-.+..+.+.+.+. -+..++.-|++|+-.++..+| .+|.|=+|+|||.... .+-+++. -.|.+
T Consensus 650 f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~--~LIkiL~--------~~gkk 715 (1100)
T KOG1805|consen 650 FVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS--LLIKILV--------ALGKK 715 (1100)
T ss_pred hhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH--HHHHHHH--------HcCCe
Confidence 3333344455555442 234678899999999887666 6889999999998533 2223332 34778
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH-----------------HHHcCCceeecCHHHHHHHH
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY-----------------RIQQGVELIVGTPGRLIDLL 275 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-----------------~l~~~~~Iii~Tp~~l~~~l 275 (533)
+|+.+=|..-+..+.-.++.+. +...-+-.+....+++. .....+.||.+|---+-+.+
T Consensus 716 VLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl 791 (1100)
T KOG1805|consen 716 VLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL 791 (1100)
T ss_pred EEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh
Confidence 9999999877666655554432 22221112222222222 22334567777632222222
Q ss_pred HcCCCCCCCeeEEEEecchhhhhc
Q 009494 276 MKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 276 ~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
+..+.|+|+|||||-.+...
T Consensus 792 ----f~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 792 ----FVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ----hhccccCEEEEccccccccc
Confidence 33567999999999987643
No 206
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.12 E-value=0.0042 Score=53.97 Aligned_cols=79 Identities=20% Similarity=0.380 Sum_probs=56.1
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCC-CcEEEEcccccccCCCCC--ccEEEEcCCCCC------------------------
Q 009494 410 LSIHGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLG--VRQVIIFDMPNS------------------------ 462 (533)
Q Consensus 410 ~~~h~~~~~~er~~~~~~f~~g~-~~VLvaT~~~~~Gldi~~--v~~VI~~d~p~s------------------------ 462 (533)
..+..+.+..+...+++.|+... ..||++|..+++|+|+|+ ++.||...+|..
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34455566667888999998754 379999988999999997 567888776631
Q ss_pred -------HhHHHHhhccccCCCCccEEEEEecC
Q 009494 463 -------IKEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 463 -------~~~y~qriGR~gR~g~~g~~~~~~~~ 488 (533)
.....|.+||+-|..+.--+++++++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346888999997665445555554
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.09 E-value=0.0077 Score=52.03 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999974
No 208
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.06 E-value=0.013 Score=66.86 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
+++..+......+ ..+++-|.+++..+.. ++-.++.|+.|+|||.+ +-++...+ . ..+.+++.++||-
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~-e--------~~G~~V~g~ApTg 435 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAW-E--------AAGYRVVGGALAG 435 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHH-H--------HcCCeEEEEcCcH
Confidence 3344443333333 3689999999998864 45678899999999985 33333332 2 3467799999996
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC
Q 009494 221 ELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG 300 (533)
Q Consensus 221 ~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~ 300 (533)
.-+..+.+. .++.. .|..+|+.........+..-++|||||+..+.
T Consensus 436 kAA~~L~e~-------~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~--- 481 (1102)
T PRK13826 436 KAAEGLEKE-------AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA--- 481 (1102)
T ss_pred HHHHHHHHh-------hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC---
Confidence 665544321 12211 12222211111122345667799999999654
Q ss_pred cHHHHHHHHHhC--CCCcEEEEecc
Q 009494 301 FRDQVMQIFRAI--SLPQILMYSAT 323 (533)
Q Consensus 301 ~~~~~~~i~~~~--~~~q~l~~SAT 323 (533)
..++..+++.. ...++|++.-+
T Consensus 482 -~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 482 -SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -HHHHHHHHHHHHhcCCEEEEECCH
Confidence 34455556555 35677777654
No 209
>PRK04296 thymidine kinase; Provisional
Probab=97.05 E-value=0.0017 Score=59.76 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=24.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.-.++.||+|+|||..++-. +.++. ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~-~~~~~---------~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQR-AYNYE---------ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHH---------HcCCeEEEEec
Confidence 44688999999999864433 33332 23567888866
No 210
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.011 Score=60.35 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=67.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE-ccc-HHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL-TPT-RELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil-~Pt-r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
+.++++||||+|||.+..-.+...... ....+.++.++ +-+ |.-+. .+++.++..+++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~------~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~------ 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGIN------SDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAI------ 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh------hccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEee------
Confidence 468889999999998754333221111 00123334443 333 33333 23555555444433211
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-cHHHHHHHHHhCC-C-CcEEEEeccCCH-
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAIS-L-PQILMYSATISQ- 326 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~~-~-~q~l~~SAT~~~- 326 (533)
-++..+...+.. +.+.++|+||++.+..... ....+..++.... . ..++.+|||...
T Consensus 240 ---------------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 240 ---------------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ---------------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 134444443332 3568899999999875221 1234445555443 2 467888999863
Q ss_pred HHHHHHHhh
Q 009494 327 EVEKMSSSI 335 (533)
Q Consensus 327 ~~~~l~~~~ 335 (533)
.+......+
T Consensus 301 ~~~~~~~~~ 309 (388)
T PRK12723 301 DVKEIFHQF 309 (388)
T ss_pred HHHHHHHHh
Confidence 344444444
No 211
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.99 E-value=0.0046 Score=53.80 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=53.0
Q ss_pred eCCCCHHHHHHHHHHHhcCCC---cEEEEccc--ccccCCCCC--ccEEEEcCCCC----CH------------------
Q 009494 413 HGEKPMKERREIMRSFLVGEV---PVIVATGI--LGRGVELLG--VRQVIIFDMPN----SI------------------ 463 (533)
Q Consensus 413 h~~~~~~er~~~~~~f~~g~~---~VLvaT~~--~~~Gldi~~--v~~VI~~d~p~----s~------------------ 463 (533)
..+....+...+++.|++..- .||+++.- +++|+|+|+ ++.||...+|. ++
T Consensus 25 ~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~ 104 (142)
T smart00491 25 IEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPF 104 (142)
T ss_pred EECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcH
Confidence 333333455788888987543 68988876 999999997 57888877663 11
Q ss_pred ---------hHHHHhhccccCCCCccEEEEEecC
Q 009494 464 ---------KEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 464 ---------~~y~qriGR~gR~g~~g~~~~~~~~ 488 (533)
....|.+||+-|..+.--+++++++
T Consensus 105 ~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 105 DEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 2236889999998766446666654
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.92 E-value=0.0044 Score=53.09 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999853
No 213
>PHA02533 17 large terminase protein; Provisional
Probab=96.90 E-value=0.0049 Score=65.67 Aligned_cols=146 Identities=13% Similarity=0.136 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|.|+|...+..+..++-.++..+-..|||.+....++..+.. ..+..+++++|++.-|..+.+.++.....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~--------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF--------NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh--------CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5789999999887666777888899999998766544443332 23568999999999999888887765443
Q ss_pred CCC--eEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHH---HHHHHHh
Q 009494 237 LPF--KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ---VMQIFRA 311 (533)
Q Consensus 237 ~~~--~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~---~~~i~~~ 311 (533)
.+. +...... ......+.+|..|.+.|-+ .....-.+..++|+||+|.+.+ +... +...+..
T Consensus 131 ~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~las 197 (534)
T PHA02533 131 LPDFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISS 197 (534)
T ss_pred CHHHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHc
Confidence 321 1000000 0001112345555444311 1111223567899999997643 2222 3333333
Q ss_pred CCCCcEEEEecc
Q 009494 312 ISLPQILMYSAT 323 (533)
Q Consensus 312 ~~~~q~l~~SAT 323 (533)
-...+++.+|+.
T Consensus 198 g~~~r~iiiSTp 209 (534)
T PHA02533 198 GRSSKIIITSTP 209 (534)
T ss_pred CCCceEEEEECC
Confidence 233355555554
No 214
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.89 E-value=0.014 Score=59.68 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
.|..-+|-|-+-+-.+. .+.+.++-+|+|+|||.+.+-.++.+-+.++ ..-.+.++.+-|..-.+....+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p------~~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP------DEHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC------cccceEEEecCcchHHHHHHHH
Confidence 35566777766554433 5678999999999999986666665554433 2334567776666554555555
Q ss_pred HHHH
Q 009494 230 AKLL 233 (533)
Q Consensus 230 ~~~~ 233 (533)
++.+
T Consensus 87 l~~l 90 (755)
T KOG1131|consen 87 LKRL 90 (755)
T ss_pred HHHH
Confidence 5544
No 215
>PRK06526 transposase; Provisional
Probab=96.88 E-value=0.015 Score=55.94 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.6
Q ss_pred HHhCCCcEEEEccCCCchhHHHH
Q 009494 168 SALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 168 ~~~~~~~~lv~a~TGsGKT~~~l 190 (533)
.+..++++++.||+|+|||..+.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 34467899999999999997544
No 216
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.82 E-value=0.013 Score=57.79 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=81.9
Q ss_pred cCCCCCCHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.|+.--+-.|.-|+..++... =+.+.++.|||||+.++.+.+.+.+.. ....+++|.=|+..+.+.+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~-------~~y~KiiVtRp~vpvG~dIG--- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER-------KRYRKIIVTRPTVPVGEDIG--- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH-------hhhceEEEecCCcCcccccC---
Confidence 477666778888998888654 367799999999999888888877663 23455777777765532210
Q ss_pred HHHcCCCC-CeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCC----------eeEEEEecchhhhhc
Q 009494 231 KLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD----------IRMFVLDEVDCMLQR 299 (533)
Q Consensus 231 ~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~----------~~~vVvDEah~~~~~ 299 (533)
|..+.. -+..-. -.+..+.+..+.+.. =++.+.+...+.+..+.+.. =.|||+|||+.+-
T Consensus 294 --fLPG~eEeKm~PW--mq~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-- 364 (436)
T COG1875 294 --FLPGTEEEKMGPW--MQAIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-- 364 (436)
T ss_pred --cCCCchhhhccch--HHHHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC--
Confidence 000000 000000 000111111111111 11233444444443332221 2479999999873
Q ss_pred CcHHHHHHHHHhC-CCCcEEEEe
Q 009494 300 GFRDQVMQIFRAI-SLPQILMYS 321 (533)
Q Consensus 300 ~~~~~~~~i~~~~-~~~q~l~~S 321 (533)
..++..|+.+. +..+++++.
T Consensus 365 --pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 --PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred --HHHHHHHHHhccCCCEEEEcC
Confidence 67889999988 445555543
No 217
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.78 E-value=0.0024 Score=65.13 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHH------hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 158 PTPVQMQAIPSA------LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 158 p~p~Q~~~i~~~------~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+++-|++++..+ ..+..+++.|+-|+|||.. +-.+..... ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~--------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR--------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc--------cccceEEEecchHHHHHhc
Confidence 567799998888 5788899999999999984 333333332 3467799999997665544
No 218
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.67 E-value=0.0018 Score=75.34 Aligned_cols=95 Identities=25% Similarity=0.460 Sum_probs=80.3
Q ss_pred CeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCC-----------HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 383 PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP-----------MKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 383 ~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~-----------~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
..++|++.+..+..+.+.++.........+.|.+. ...+.+++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999999988887555555555555443 1246789999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCC
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMG 477 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g 477 (533)
+.|+.++.|.....|+|..||+.+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998764
No 219
>PRK08181 transposase; Validated
Probab=96.65 E-value=0.053 Score=52.59 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=62.3
Q ss_pred CHHHHHHHH----HHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 159 TPVQMQAIP----SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 159 ~p~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+.|..++. .+..++++++.||+|+|||-.+. .+...+.. .+..++++ +..+|..++.....
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~---------~g~~v~f~-~~~~L~~~l~~a~~--- 154 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE---------NGWRVLFT-RTTDLVQKLQVARR--- 154 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH---------cCCceeee-eHHHHHHHHHHHHh---
Confidence 345555442 34477899999999999997433 22223322 24445554 44566554432110
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc-HHHHHHHHHhC-
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI- 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~-~~~~~~i~~~~- 312 (533)
. .+...++.. +.+.+++|+||.+......+ ...+..++...
T Consensus 155 -~-----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~ 197 (269)
T PRK08181 155 -E-----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARY 197 (269)
T ss_pred -C-----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 0 112222221 34567899999997643221 23445555443
Q ss_pred CCCcEEEEeccCCHH
Q 009494 313 SLPQILMYSATISQE 327 (533)
Q Consensus 313 ~~~q~l~~SAT~~~~ 327 (533)
....+|+.|...+.+
T Consensus 198 ~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 198 ERRSILITANQPFGE 212 (269)
T ss_pred hCCCEEEEcCCCHHH
Confidence 334566666555543
No 220
>PRK14974 cell division protein FtsY; Provisional
Probab=96.63 E-value=0.024 Score=56.72 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=34.5
Q ss_pred CeeEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhh
Q 009494 284 DIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 284 ~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~ 335 (533)
..++|++|.+.++.. ......+..+.... +...++.++||..+.....++.+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 467999999998752 23445566665544 45567788888876665555554
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.60 E-value=0.047 Score=52.11 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCCeeEEEEecchhhhhcCcHH-HHHHHHHhC--CCCcEEEEeccCCHHHH
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRD-QVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~-~~~~i~~~~--~~~q~l~~SAT~~~~~~ 329 (533)
+.++++|||||++......+.. .+..|+... ....+++.|.--+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 3467899999999865433333 344455443 35677777766555443
No 222
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.57 E-value=0.0082 Score=63.64 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009494 160 PVQMQAIPSALS-----G----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 160 p~Q~~~i~~~~~-----~----~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
|||.-.+-.++. | +.+++.-|-|.|||......++-.+.- ....+..+++++++++-|..+.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~------~g~~~~~i~~~A~~~~QA~~~f~~~ 74 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL------DGEPGAEIYCAANTRDQAKIVFDEA 74 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc------CCccCceEEEEeCCHHHHHHHHHHH
Confidence 678888777662 2 347888899999997544433333322 1245678999999999999999998
Q ss_pred HHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc--CCCCCCCeeEEEEecchhhhhcCcHHHHHHH
Q 009494 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCMLQRGFRDQVMQI 308 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~--~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i 308 (533)
+.+....+...... . ...... ..-.|.....+.++..+.. ....-.+..++|+||+|.+.+......+..-
T Consensus 75 ~~~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g 147 (477)
T PF03354_consen 75 KKMIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESG 147 (477)
T ss_pred HHHHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhh
Confidence 88765532111000 0 000000 0112222211222122211 1223346789999999998664444444444
Q ss_pred HHhCCCCcEEEEec
Q 009494 309 FRAISLPQILMYSA 322 (533)
Q Consensus 309 ~~~~~~~q~l~~SA 322 (533)
....++++++.+|.
T Consensus 148 ~~~r~~pl~~~IST 161 (477)
T PF03354_consen 148 MGARPNPLIIIIST 161 (477)
T ss_pred hccCCCceEEEEeC
Confidence 44556777776654
No 223
>PRK06921 hypothetical protein; Provisional
Probab=96.23 E-value=0.055 Score=52.53 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.+.++++.|++|+|||.. +.++...+.. ..+..++++.. .++..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~--------~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR--------KKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh--------hcCceEEEEEH-HHHHHH
Confidence 357799999999999974 3334444432 11455666553 344443
No 224
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.19 E-value=0.039 Score=48.74 Aligned_cols=38 Identities=32% Similarity=0.323 Sum_probs=23.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+++.|++|+|||..+.. +...+. ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~---------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIA---------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHH---------hcCCEEEEEECCcch
Confidence 67899999999985433 222221 135557777665443
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.15 Score=50.93 Aligned_cols=47 Identities=9% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCCeeEEEEecchhhhhcCc-HHHHHHHHHhC--CCCcEEEEeccCCHHH
Q 009494 282 LDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~-~~~~~~i~~~~--~~~q~l~~SAT~~~~~ 328 (533)
+.++++||||+.+......| ...+..++... ....+|+.|.-.+.+.
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 34678999999986543222 34455555544 3456666666555544
No 226
>PRK08727 hypothetical protein; Validated
Probab=96.18 E-value=0.04 Score=52.45 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHH
Q 009494 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~ 328 (533)
.+.++||+||+|.+.... ....+..++... ...++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 345689999999876432 223344444443 2344666565555544
No 227
>PRK06893 DNA replication initiation factor; Validated
Probab=96.17 E-value=0.016 Score=55.03 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=27.8
Q ss_pred CCeeEEEEecchhhhhc-CcHHHHHHHHHhC--CCCcEEEEeccCCH
Q 009494 283 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~--~~~q~l~~SAT~~~ 326 (533)
.+.+++|+||+|.+... .+...+..++... ...+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 45679999999987532 2344555555555 23456677776544
No 228
>PRK12377 putative replication protein; Provisional
Probab=96.15 E-value=0.079 Score=50.69 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
..++++.|++|+|||.. +.++...+.. .+..+++ ++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~---------~g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA---------KGRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH---------cCCCeEE-EEHHHHHHHHHH
Confidence 35799999999999974 3333444432 2333544 455567665544
No 229
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.12 E-value=0.053 Score=59.72 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++-. ...+++|.|..|||||.+. +..+.+++... .....++|+++.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl-~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL-VARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH-HHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999999854 3457899999999999873 44444444311 1234579999999999998888776543
No 230
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.11 E-value=0.082 Score=55.68 Aligned_cols=48 Identities=15% Similarity=0.391 Sum_probs=28.0
Q ss_pred CeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHHHHH
Q 009494 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKM 331 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l 331 (533)
.+++|++||+|.+.... ....+..++..+ ...++++.|...|..+..+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 46689999999875432 233444555444 3456666555555554433
No 231
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.10 E-value=0.087 Score=47.98 Aligned_cols=48 Identities=25% Similarity=0.227 Sum_probs=32.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+++.|++|+|||...+--+...+ ..+.++++++.. +-..++.+.++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~----------~~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL----------ARGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH----------HCCCcEEEEECC-CCHHHHHHHHHHc
Confidence 68999999999986544333332 235668888654 5556676666665
No 232
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.10 E-value=0.044 Score=60.61 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009494 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.|....+..+......+.++||.++++.-+..+.+.|++..+..+..+||+++..+|.........|..+|+|+|..+..
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~ 253 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF 253 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc
Confidence 34443333443333446789999999999999999998677888999999999999999999999999999999975432
Q ss_pred cCCCCCccEEEEcC
Q 009494 445 GVELLGVRQVIIFD 458 (533)
Q Consensus 445 Gldi~~v~~VI~~d 458 (533)
+.+.++.+||.-+
T Consensus 254 -~p~~~l~liVvDE 266 (679)
T PRK05580 254 -LPFKNLGLIIVDE 266 (679)
T ss_pred -ccccCCCEEEEEC
Confidence 4566788777643
No 233
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.09 E-value=0.03 Score=54.66 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=56.4
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCc
Q 009494 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGD 248 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~ 248 (533)
+..|.-+++.|++|+|||...+..+.. +.. ..+..+++++-- +-..++...+.....+.++.......+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~-~~~--------~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 96 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALD-LIT--------QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIY 96 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHH-HHH--------hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccc
Confidence 346677899999999999854433332 221 225668887642 2223333333322222222111000011
Q ss_pred chHHHH----HHHHcCCcee-e-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 249 AMARQV----YRIQQGVELI-V-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 249 ~~~~~~----~~l~~~~~Ii-i-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
. .... ..+.....+. + .|++.+...+.... .-..+++||||..+.+...
T Consensus 97 ~-~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 97 T-LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred c-HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1 1111 1222112222 2 15555655554321 1135789999999987643
No 234
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.05 E-value=0.038 Score=58.83 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009494 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.|....+..+......+.++||.++++.-+..+++.|++..+..+..+||+++..+|........+|+.+|+|+|..+..
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 34444444444444456789999999999999999998777888999999999999999999999999999999975432
Q ss_pred cCCCCCccEEEEc
Q 009494 445 GVELLGVRQVIIF 457 (533)
Q Consensus 445 Gldi~~v~~VI~~ 457 (533)
..+.++.+||.-
T Consensus 89 -~p~~~l~lIIVD 100 (505)
T TIGR00595 89 -LPFKNLGLIIVD 100 (505)
T ss_pred -CcccCCCEEEEE
Confidence 456678887763
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.12 Score=52.35 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=65.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE-c-ccH-HHHHHHHHHHHHHcCCCCCeEEEEEcCcc
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL-T-PTR-ELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil-~-Ptr-~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
+.++++||||+|||......+. .+. ..+.++.++ + |.| ..+.|+. .+....++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~---------~~GkkVglI~aDt~RiaAvEQLk----~yae~lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFH---------GKKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHH---------HcCCcEEEEecCCcchHHHHHHH----HHhhhcCCcEE-------
Confidence 5678999999999986544332 222 223344444 4 333 2333333 33322222221
Q ss_pred hHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-cHHHHHHHHHhC-CCCcEEEEeccCC-H
Q 009494 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI-SLPQILMYSATIS-Q 326 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~-~~~q~l~~SAT~~-~ 326 (533)
+..+|..+.+.+.... .-.++++|+||-+=+..... .-..+..++... +..-++.+|||.. +
T Consensus 301 --------------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 301 --------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred --------------ecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 1335666655443321 01257899999987754221 223334444433 3334566888754 4
Q ss_pred HHHHHHHhhC
Q 009494 327 EVEKMSSSIS 336 (533)
Q Consensus 327 ~~~~l~~~~~ 336 (533)
.+...++.+.
T Consensus 366 d~~~i~~~F~ 375 (436)
T PRK11889 366 DMIEIITNFK 375 (436)
T ss_pred HHHHHHHHhc
Confidence 5566666654
No 236
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.01 E-value=0.023 Score=63.55 Aligned_cols=71 Identities=27% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..++|-|++++.. ....++|.|..|||||.+ +..-+.+++... .-...++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3578999999865 356899999999999987 444445554321 1234569999999999999888887764
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=95.96 E-value=0.045 Score=52.15 Aligned_cols=43 Identities=16% Similarity=0.426 Sum_probs=25.7
Q ss_pred CeeEEEEecchhhhhc-CcHHHHHHHHHhCC-CCcEEEEeccCCH
Q 009494 284 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAIS-LPQILMYSATISQ 326 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~-~~~~~~~~i~~~~~-~~q~l~~SAT~~~ 326 (533)
+++++|+|++|.+... .+...+..++..+. ....+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4568999999977533 33455666766552 2334555555433
No 238
>PF13173 AAA_14: AAA domain
Probab=95.93 E-value=0.13 Score=43.74 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=27.3
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
.-.+|++||+|.+. ++...+..+....++.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEccch
Confidence 45689999999985 4677777777765555666554443
No 239
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.045 Score=54.79 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHhCCC----cEEEEccCCCchhHHHH
Q 009494 158 PTPVQMQAIPSALSGK----SLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~----~~lv~a~TGsGKT~~~l 190 (533)
.+|||...+..+.... ..++.||.|.|||..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 4799999999888543 37899999999998544
No 240
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.86 E-value=0.055 Score=59.24 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG-MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~-~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
..|....+.++......++.+||.++.+..+..+.+.|+...+ ..+..+|++++..+|........+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4577777777777666788999999999999999999997777 789999999999999999999999999999999874
Q ss_pred cccCCCCCccEEEEcC
Q 009494 443 GRGVELLGVRQVIIFD 458 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d 458 (533)
. =.-+++...||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 35666778888744
No 241
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.83 E-value=0.073 Score=63.10 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.+++-|.+++..++.. +-++|.|..|+|||.+. -.++..+... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l-----~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML-----PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH-----hhccCceEEEEechHHHHHHH
Confidence 6899999999999954 66899999999999863 2222222110 113456788999997766654
No 242
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.82 E-value=0.13 Score=53.44 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=26.9
Q ss_pred CeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHHHH
Q 009494 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEK 330 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~ 330 (533)
+.++||+||+|.+.... ....+..++..+ ...++++.|...|..+..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 35689999999876432 223344455444 345666555545554443
No 243
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.82 E-value=0.026 Score=63.14 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.++|-|++++.. ....++|.|..|||||.+. ..-+.+++... .-....+|+|+-|+..|..+.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL-VHRIAWLMQVE-----NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcC-----CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 578999999865 3468999999999999874 44444444311 1223469999999999999888887764
No 244
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.77 E-value=0.11 Score=54.43 Aligned_cols=52 Identities=12% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHHh
Q 009494 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSS 334 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~~ 334 (533)
.+.+++++||+|.+.... ....+..++..+ ...++|+.|.+.|..+..+...
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 357789999999876432 234445555443 4566777666667666544333
No 245
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.76 E-value=0.024 Score=57.15 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
++.+.++||||-|||.+..-.+....+. .++...+||-+-|--.+. .++++.+++-+++.+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-------~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-------KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVV------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-------ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEe-------
Confidence 7788999999999998755444433311 134455677666543332 355666655555444333
Q ss_pred HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh-hcCcHHHHHHHHHhC-CCCcEEEEeccCC
Q 009494 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRGFRDQVMQIFRAI-SLPQILMYSATIS 325 (533)
Q Consensus 252 ~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~-~~~~~~~~~~i~~~~-~~~q~l~~SAT~~ 325 (533)
-+|.-|...+. .+.++++|.||=+-+-. |.....++...+..- +....+.+|||--
T Consensus 267 --------------~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 267 --------------YSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred --------------cCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc
Confidence 34444444333 34556778888776421 111223333333333 2234466677654
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.74 E-value=0.048 Score=57.18 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=59.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
..+++.|++|+|||.. +-++...+.. ...+.+++++.. .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~-------~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIES-------NFSDLKVSYMSG-DEFARKAVDILQKTH------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHH-------hCCCCeEEEEEH-HHHHHHHHHHHHHhh------------------
Confidence 3588999999999963 2333333322 123456776655 456555444432100
Q ss_pred HHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc-CcHHHHHHHHHhC--CCCcEEEEeccCCHHH
Q 009494 253 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 253 ~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~ 328 (533)
+.+..+.. .+.+.+++|+||+|.+... .....+..++..+ ...++|+.|-..|...
T Consensus 195 ----------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ----------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ----------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 1245678999999987532 1234455555554 3456666666666544
No 247
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.73 E-value=0.1 Score=49.65 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
+..+++.||+|+|||-.
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999974
No 248
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.72 E-value=0.058 Score=56.55 Aligned_cols=92 Identities=22% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCCCH-HHHHHHHHcCCCCCCH----HHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 140 CSLSQ-KLLQNIEAAGYDMPTP----VQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 140 ~~l~~-~l~~~l~~~g~~~p~p----~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.+..+ -|..+|++.--.+++. +|.+-=..+. .++-++|+|..|||||.+++--+.-.+..++... .+..
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l----~~k~ 262 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL----QAKP 262 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc----ccCc
Confidence 34444 4455666654444332 3444444444 3455889999999999987654443333333222 2333
Q ss_pred EEEEcccHHHHHHHHHHHHHHcC
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
+||+.|++-+..-+.+.+-.++.
T Consensus 263 vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 263 VLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred eEEEcCcHHHHHHHHHhchhhcc
Confidence 99999999998877776666644
No 249
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.72 E-value=0.025 Score=58.53 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=76.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH-HHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE-LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~-L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
.++.|..|||||.+..+-++..++.. ..+.+++++.++.. |...+...++.....+++....-....+. .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~ 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--E 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--E
Confidence 57899999999998888887777652 14577999999886 55557777776555444332221111110 0
Q ss_pred HHHHHc-CCceeecCH-HHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC---CCcEEEEeccCCH
Q 009494 254 VYRIQQ-GVELIVGTP-GRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQ 326 (533)
Q Consensus 254 ~~~l~~-~~~Iii~Tp-~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~---~~q~l~~SAT~~~ 326 (533)
..+.. +..|++..- +...++ .....++++.+|||..+... .+..++.++. ....+.+|.+++.
T Consensus 75 -i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 75 -IKILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred -EEecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 01112 345555432 111111 12234689999999987533 3444444442 2224778888765
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.028 Score=56.87 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~ 193 (533)
.++.+++.||||+|||......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998654433
No 251
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.71 E-value=0.077 Score=50.08 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+..+++.|++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 252
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.62 E-value=0.049 Score=50.25 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCeeEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHH
Q 009494 283 DDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEK 330 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~ 330 (533)
+++++|+||=+-+... ......+..+++.. +..-++.+|||...+...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 4577899999876432 12334555666665 445677889998765433
No 253
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.58 E-value=0.078 Score=50.18 Aligned_cols=42 Identities=10% Similarity=0.292 Sum_probs=24.9
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCH
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQ 326 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~ 326 (533)
..++||+||+|.+.... ...+..++... ....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 45679999999875332 34455555443 22335667776543
No 254
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0092 Score=57.59 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=20.1
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHhh
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQCAN 199 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l~~ 199 (533)
++..|+++.+|||||||+.+. .+..+++
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 355689999999999998543 3444444
No 255
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.046 Score=54.71 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=26.6
Q ss_pred eEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 286 RMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
.++++||+||+. ..+-..++.++.+-.++++.||=
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccC
Confidence 369999999974 34455666777788889999983
No 256
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.56 E-value=0.066 Score=51.66 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCC
Q 009494 279 DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATIS 325 (533)
Q Consensus 279 ~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~ 325 (533)
....+.++.||+||||.|.... +..+.+.++.. ...++++.+.-+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3456778999999999997654 56666777664 4456666665543
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.099 Score=50.36 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=32.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
++.++++.|++|+|||..+. ++-..+.. .+.++ +++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~---------~g~sv-~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLK---------AGISV-LFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH---------cCCeE-EEEEHHHHHHHHHHHHh
Confidence 67899999999999998533 33333332 23444 44667788776655443
No 258
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.55 E-value=0.048 Score=51.36 Aligned_cols=106 Identities=16% Similarity=0.320 Sum_probs=61.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
.+++.|++|+|||-. +.++...+... ..+.+++++... +........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-------~~~~~v~y~~~~-~f~~~~~~~~~~--------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-------HPGKRVVYLSAE-EFIREFADALRD--------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-------CTTS-EEEEEHH-HHHHHHHHHHHT---------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-------cccccceeecHH-HHHHHHHHHHHc---------------------
Confidence 489999999999972 34444443321 235567776543 443433332221
Q ss_pred HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHH
Q 009494 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 254 ~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~ 328 (533)
.....+.+. +...+++++|++|.+.... +...+..++..+ ...++|+.|...|.++
T Consensus 86 ------------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ------------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ------------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ------------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 112222222 3467889999999986542 345555565555 5678888887777654
No 259
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.15 Score=50.62 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHHh
Q 009494 155 YDMPTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
+..++|||..++..+. .++ -.++.||.|.||+..+. .+...++
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~Ll 51 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVL 51 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHh
Confidence 3568899999998876 343 47899999999998543 3333433
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.46 E-value=0.18 Score=52.86 Aligned_cols=50 Identities=16% Similarity=0.418 Sum_probs=29.3
Q ss_pred CeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHH
Q 009494 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKMSS 333 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~ 333 (533)
..+++++||+|.+.+.. ....+..++..+ ...++|+.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 46789999999876432 223444454444 344566655556665554433
No 261
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.43 E-value=0.36 Score=53.65 Aligned_cols=28 Identities=14% Similarity=0.570 Sum_probs=18.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHh
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~ 311 (533)
..+.+|||||+|.+...+ ...+..+++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 456789999999987542 3444445443
No 262
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.41 E-value=0.048 Score=60.34 Aligned_cols=70 Identities=23% Similarity=0.136 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+++-|.+++.. ....++|.|.+|||||.+ +..-+.+++... .-...++|+++.|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGC-----GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-----CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 468999999875 356789999999999987 444444444311 1123469999999999999888777653
No 263
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.059 Score=59.03 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=85.1
Q ss_pred EEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEE
Q 009494 357 LAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVI 436 (533)
Q Consensus 357 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VL 436 (533)
....+..+.|.+..++++.+....++.+||.++.+.....+...|+...|.++..+|++++..+|.......++|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 34455667788888888888888889999999999999999999998899999999999999999999999999999999
Q ss_pred EEcccccccCCCCCccEEEE
Q 009494 437 VATGILGRGVELLGVRQVII 456 (533)
Q Consensus 437 vaT~~~~~Gldi~~v~~VI~ 456 (533)
|.|..+- =.-++++..||.
T Consensus 301 IGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 301 IGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEechhh-cCchhhccEEEE
Confidence 9998643 345667777776
No 264
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.32 E-value=0.062 Score=53.45 Aligned_cols=64 Identities=28% Similarity=0.320 Sum_probs=41.5
Q ss_pred HHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 149 NIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 149 ~l~~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+...|. +++.|...+..+. .+.+++++|+||||||.. +-.++..+... ....+++.+=.+.||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-------~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS-------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC-------CCCceEEEecCCccc
Confidence 3444554 5677777766555 667899999999999984 44444443210 123467777777777
No 265
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.31 E-value=0.19 Score=50.56 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=23.9
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
...++||+||+|.+... ....+..++...+..-.+.++++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45678999999987543 24455566655544333444444
No 266
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.28 E-value=0.18 Score=48.79 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHH
Q 009494 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~l 190 (533)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998643
No 267
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.27 E-value=0.12 Score=53.96 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHhC------C----CcEEEEccCCCchhHHHH-HHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH
Q 009494 157 MPTPVQMQAIPSALS------G----KSLLVSANTGSGKTASFL-VPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~------~----~~~lv~a~TGsGKT~~~l-lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.+-|||.-++-.++. + +.++|..|-+-|||..+. +.+...+... ..+....|++|+.+-+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------hcCCcEEEEeccHHHHHH
Confidence 456999999988881 2 247999999999997544 3333333321 346679999999999998
Q ss_pred HHHHHHHHcCCCC-CeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHc--CCCCCCCeeEEEEecchhhhhcCc
Q 009494 226 VEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCMLQRGF 301 (533)
Q Consensus 226 ~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~--~~~~l~~~~~vVvDEah~~~~~~~ 301 (533)
....++......+ ++..+ .+.. ...|...--...+..+.. +..+-.+..+.|+||.|...+.+
T Consensus 134 ~F~~ar~mv~~~~~l~~~~------------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 134 SFNPARDMVKRDDDLRDLC------------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred hhHHHHHHHHhCcchhhhh------------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 8888876544322 11100 0000 011222111111122221 23445667899999999876542
Q ss_pred HHHHHHHHHhC---CCCcEEEEecc
Q 009494 302 RDQVMQIFRAI---SLPQILMYSAT 323 (533)
Q Consensus 302 ~~~~~~i~~~~---~~~q~l~~SAT 323 (533)
..+..+..-+ +..+++..|..
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEecC
Confidence 4444444443 77788887764
No 268
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.26 E-value=0.86 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~ 193 (533)
++-+.+.||||+|||++....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3457889999999998754433
No 269
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.25 E-value=0.21 Score=60.09 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.+++.|.+++..++.+ +-++|.|..|+|||.+ +-.++..+... ....+..++.++||---+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l-----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL-----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh-----hcccCceEEEECCcHHHHHHH
Confidence 6899999999999975 5688999999999985 33333332211 113456788999997766543
No 270
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.17 E-value=0.15 Score=56.47 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHh---hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccCCCCCccEE
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQV 454 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~---~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~~~Gldi~~v~~V 454 (533)
..+.+++|.++++.-|...++.+++ ..++.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.++.+|
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceE
Confidence 3467899999999999888887763 33688999999999999999999999999999999974 4556778888888
Q ss_pred EE
Q 009494 455 II 456 (533)
Q Consensus 455 I~ 456 (533)
|.
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 86
No 271
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.15 E-value=0.21 Score=53.83 Aligned_cols=151 Identities=11% Similarity=0.163 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHh---CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSAL---SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~---~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.-|+|.=.+-|..+. ..+-.++.+|-|.|||.+..+.+.. +.. ..+.+++|.+|...-+.++.+.++.
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~-La~--------f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAA-MIS--------FLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHH-HHH--------hcCCeEEEECCChhhHHHHHHHHHH
Confidence 345555555555544 5677889999999999875544433 222 1256799999999998988887776
Q ss_pred HcCCCC--------CeEEEEEcCcchHHHH--HHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc
Q 009494 233 LGKGLP--------FKTALVVGGDAMARQV--YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF 301 (533)
Q Consensus 233 ~~~~~~--------~~~~~~~gg~~~~~~~--~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~ 301 (533)
+....+ .++..+.||...-... ...+.+ ..+.+++- ..+...-..++++|+|||.-+....
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-------s~~s~RG~~~DLLIVDEAAfI~~~~- 310 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-------SPNAARGQNPDLVIVDEAAFVNPGA- 310 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-------cCCCcCCCCCCEEEEECcccCCHHH-
Confidence 665322 1222222322100000 000001 22222221 1122222457899999999876532
Q ss_pred HHHHHHHHHhCCCCcEEEEeccC
Q 009494 302 RDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 302 ~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
...+...+.. ...+++++|.+.
T Consensus 311 l~aIlP~l~~-~~~k~IiISS~~ 332 (752)
T PHA03333 311 LLSVLPLMAV-KGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHcc-CCCceEEEeCCC
Confidence 2223333333 356666667664
No 272
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.19 Score=45.42 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=51.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
=.++.+|+.||||...+--+ .++. ..+.++++..|...- ++ +...+.-.-|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~-~~~~---------~~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~~--- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRA-RRYK---------EAGMKVLVFKPAIDT---------RY----GVGKVSSRIGLSS--- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHH-HHHH---------HcCCeEEEEeccccc---------cc----ccceeeeccCCcc---
Confidence 35889999999998533222 2221 357779998886221 11 1111111112111
Q ss_pred HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhh
Q 009494 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 254 ~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~ 296 (533)
..++|-.+..+.+.+....... .++.|.||||+-+
T Consensus 60 -------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~ 94 (201)
T COG1435 60 -------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF 94 (201)
T ss_pred -------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC
Confidence 3456667777777776543322 2889999999954
No 273
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.11 E-value=0.065 Score=51.23 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=25.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
.|.-+++.|++|+|||...+ -++.++.. ..+..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~-~~~~~~~~--------~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFAL-NIAENIAK--------KQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHH--------hCCCceEEEe
Confidence 56678999999999997543 33333332 2256688888
No 274
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.10 E-value=0.19 Score=52.36 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=24.5
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
.-.+|++||+|++.. .+...++..+....++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVEDGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhcCcEEEEEeCCC
Confidence 456899999998753 23334445555566777766643
No 275
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.09 E-value=0.17 Score=62.31 Aligned_cols=63 Identities=25% Similarity=0.209 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHH--HHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFL--VPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~l--lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..+++.|.+++..++.+ +-++|.|..|+|||.+.. +-.+..+.. ..+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~--------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE--------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH--------hcCCeEEEEeChHHHHHHH
Confidence 36899999999998865 457889999999998531 112222221 3466799999997666544
No 276
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.08 E-value=0.5 Score=47.98 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=61.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
.+.+.+.|+.|.|||. ++-++-..+.. ..+.+ ++.-+...++++.+.++.. +..+..
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-------~~k~R----~HFh~Fm~~vh~~l~~~~~----------~~~~l~ 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-------KRKRR----VHFHEFMLDVHSRLHQLRG----------QDDPLP 118 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-------ccccc----ccccHHHHHHHHHHHHHhC----------CCccHH
Confidence 4678999999999997 44443332210 11222 2445666677777776640 111111
Q ss_pred HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCHHH
Q 009494 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 252 ~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~ 328 (533)
.- .+.+ .+...+|++||+|. .|.+-.-.+.++++.+ ...-+|++|.+.|.++
T Consensus 119 ~v------------------a~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 119 QV------------------ADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred HH------------------HHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 11 1111 23455799999994 3444344455556555 5667888888888654
No 277
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.08 E-value=0.078 Score=52.82 Aligned_cols=66 Identities=27% Similarity=0.366 Sum_probs=43.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 147 LQNIEAAGYDMPTPVQMQAIPSA-LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 147 ~~~l~~~g~~~p~p~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
++.|...|+ +++.|.+.+..+ ..+++++++|+||||||. ++-.++..+... ....+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ-------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc-------CCCceEEEEcCCCcc
Confidence 344555554 457777777654 467899999999999996 344444443211 224467888888777
No 278
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.06 E-value=0.13 Score=60.91 Aligned_cols=121 Identities=22% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
.|+-|.++|.. .+++++|.|..|||||.+..--++..+... ..-.++|+++=|+..|..+.+.+.+.....
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 57899999973 688999999999999998655555544321 112459999999999988777666432210
Q ss_pred CCeEEEEEcCcchHHHH-HHHHcCCceeecCHHHHHHHH-HcCCC--CCCCeeEEEEecchh
Q 009494 238 PFKTALVVGGDAMARQV-YRIQQGVELIVGTPGRLIDLL-MKHDI--ELDDIRMFVLDEVDC 295 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~-~~l~~~~~Iii~Tp~~l~~~l-~~~~~--~l~~~~~vVvDEah~ 295 (533)
+. ..+....+ ..+..-...-|+|...+...+ +.... .+ +-.+=|.||...
T Consensus 73 -~~------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 73 -LQ------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred -Hh------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 00 01111111 112222456789999885444 43322 22 123456888775
No 279
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.19 Score=54.63 Aligned_cols=40 Identities=13% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+.+++||||+|+|....+ ..+.+.++.-+..-++++..|
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEecC
Confidence 4688999999999875443 334444454333333333444
No 280
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.069 Score=55.65 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.5
Q ss_pred EEEEccCCCchhHHHHH
Q 009494 175 LLVSANTGSGKTASFLV 191 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ll 191 (533)
+|+.||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999986543
No 281
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.062 Score=57.91 Aligned_cols=40 Identities=13% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+.+++||||+|+|....+ ..+.++++..+..-.+++++|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEEC
Confidence 4578999999998865443 345555555443334444445
No 282
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.95 E-value=0.11 Score=57.79 Aligned_cols=69 Identities=23% Similarity=0.143 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
++|-|.+++.. ...+++|.|..|||||.+. +.-+.+++... .....++|+|+.|+..|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L-~~ri~~ll~~~-----~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVI-TNKIAYLIQNC-----GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998865 4568999999999999874 44444444311 1234569999999999999888877654
No 283
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.94 E-value=0.1 Score=44.26 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.3
Q ss_pred eeEEEEecchhhhhcC
Q 009494 285 IRMFVLDEVDCMLQRG 300 (533)
Q Consensus 285 ~~~vVvDEah~~~~~~ 300 (533)
-.++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987654
No 284
>PLN03025 replication factor C subunit; Provisional
Probab=94.93 E-value=0.3 Score=48.90 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
...+++|+||+|.|.... ...+.+.++..+..-.+.++++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEeC
Confidence 357899999999986543 4555566655443333444443
No 285
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.87 E-value=0.19 Score=51.99 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
.++++.||+|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999985
No 286
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.85 E-value=0.36 Score=50.56 Aligned_cols=92 Identities=17% Similarity=0.299 Sum_probs=52.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.+++|+|||...+. +...+. ..+.+++|+.-. +-..|+...++++.-.. ....+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq-~a~~~a---------~~g~~vlYvs~E-es~~qi~~ra~rlg~~~--~~l~~~~e--- 142 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQ-VAARLA---------AAGGKVLYVSGE-ESASQIKLRAERLGLPS--DNLYLLAE--- 142 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHHHHH---------hcCCeEEEEEcc-ccHHHHHHHHHHcCCCh--hcEEEeCC---
Confidence 456689999999999985333 322222 124568888754 44567766666654321 11111111
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~ 298 (533)
...+.+...+.. .+.++||||+++.+..
T Consensus 143 ---------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 ---------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 122333333332 2567899999998764
No 287
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.14 Score=57.44 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
.+++++||||+|+|.... ...+.++++..+..-+++|.+|-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEeCCh
Confidence 578899999999987644 345555666554444444444433
No 288
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.75 E-value=0.27 Score=52.92 Aligned_cols=47 Identities=11% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCeeEEEEecchhhhhcC-cHHHHHHHHHhC--CCCcEEEEeccCCHHHH
Q 009494 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~-~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~ 329 (533)
.++++|||||+|.+.... ....+..++..+ ...++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 457889999999875432 234455555555 34677776666665553
No 289
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.75 E-value=0.086 Score=54.41 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHH
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~l 190 (533)
+-......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777789999999999999998653
No 290
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.70 E-value=0.15 Score=50.41 Aligned_cols=66 Identities=32% Similarity=0.444 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 147 LQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 147 ~~~l~~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
++.+.+.|. +++-|.+.+..+. .+++++++|+||||||.. +-.++..+.. .....+++++-.+.|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~-------~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK-------NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc-------cCCCceEEEECCchhh
Confidence 344444443 4455555555544 677999999999999984 3444443321 1124568888888887
No 291
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.67 E-value=0.018 Score=51.75 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=54.2
Q ss_pred EEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH
Q 009494 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 255 (533)
Q Consensus 176 lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 255 (533)
++.|+-|-|||.+.-+.+.. +.. ....+++|.+|+.+-++.+.+.+..-.+..+++......+ .....
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~--------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQ--------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS-------------EEEE-SS--S-HHHHHCC-------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHH--------hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccc
Confidence 57899999999875544322 111 1225699999999887777666554444433333000000 00000
Q ss_pred HHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 256 RIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 256 ~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
....+..|-+..|+.+.... ...+++|||||=.+. -+.+..++. ....++||.|+.
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~---~~~~vv~stTi~ 124 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLR---RFPRVVFSTTIH 124 (177)
T ss_dssp ----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC---CSSEEEEEEEBS
T ss_pred cccccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHh---hCCEEEEEeecc
Confidence 01124677778887763321 234789999998763 556666654 345667788864
No 292
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.18 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp 192 (533)
++.+++++|+|+|||....-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456789999999999865433
No 293
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.62 E-value=0.19 Score=53.93 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=80.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCe-EEEEEcCc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFK-TALVVGGD 248 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~-~~~~~gg~ 248 (533)
..+-.++..|--.|||.... +++..++. ...+-++++.+|.+..++.+.++++...... +-. +..+. |.
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~-------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge 323 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALA-------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GE 323 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHH-------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-Cc
Confidence 34667889999999998544 66655443 1347789999999999999998888764421 111 11112 22
Q ss_pred chHHHHHHHHcC--CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 249 AMARQVYRIQQG--VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 249 ~~~~~~~~l~~~--~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.. .....++ ..|.++| ....+...-..++++|||||+-+.+..+...+ ..+.. .++++|++|.|
T Consensus 324 ~I---~i~f~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~-~n~k~I~ISS~ 389 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ-TNCKIIFVSST 389 (738)
T ss_pred EE---EEEecCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc-cCccEEEEecC
Confidence 11 0111222 2455553 11122233457999999999988654433333 22222 48899999987
No 294
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.61 E-value=0.081 Score=53.60 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=30.9
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
+|..+.+++++++|+.+.+.+. ..+..++++||||||||.. +-.++..+
T Consensus 110 l~~~~~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 110 IPAEPPKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCCCCCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3445557777777754433221 1456799999999999984 34444444
No 295
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.8 Score=44.20 Aligned_cols=174 Identities=16% Similarity=0.226 Sum_probs=91.7
Q ss_pred HHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-----cEEEEccCCCchhHH
Q 009494 114 TDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGK-----SLLVSANTGSGKTAS 188 (533)
Q Consensus 114 ~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~-----~~lv~a~TGsGKT~~ 188 (533)
-.+++..+.-.+ ..-+|-..|++.-=-+.-.++|+..=+ -|+ -+|.+..|+ .+|+.+|+|+||+..
T Consensus 112 ~kKLr~~L~sAI---v~EKPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYL 182 (439)
T KOG0739|consen 112 KKKLRSALNSAI---VREKPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSYL 182 (439)
T ss_pred HHHHHHHhhhhh---hccCCCCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHHH
Confidence 345555544222 123456677775322344555554311 011 134555554 489999999999973
Q ss_pred HHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCH
Q 009494 189 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTP 268 (533)
Q Consensus 189 ~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp 268 (533)
.-++.. ..+ ...+-+.+..|+..|..+..++.+.
T Consensus 183 --AKAVAT-----------EAn-STFFSvSSSDLvSKWmGESEkLVkn-------------------------------- 216 (439)
T KOG0739|consen 183 --AKAVAT-----------EAN-STFFSVSSSDLVSKWMGESEKLVKN-------------------------------- 216 (439)
T ss_pred --HHHHHh-----------hcC-CceEEeehHHHHHHHhccHHHHHHH--------------------------------
Confidence 222221 112 4677778888888777666555321
Q ss_pred HHHHHHHHcCCCCCCCeeEEEEecchhhhhcC---cHHHHHHHHHhC---------CCCcEEEEeccCCHHHH-HHHHhh
Q 009494 269 GRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG---FRDQVMQIFRAI---------SLPQILMYSATISQEVE-KMSSSI 335 (533)
Q Consensus 269 ~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~---~~~~~~~i~~~~---------~~~q~l~~SAT~~~~~~-~l~~~~ 335 (533)
|..+-+.+ .-+.|.|||+|.+.... -....++|...+ ...-++.+.||--+++. ..+++-
T Consensus 217 --LFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRR 289 (439)
T KOG0739|consen 217 --LFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRR 289 (439)
T ss_pred --HHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHH
Confidence 11222222 24569999999876432 223333443332 34568888888655443 334444
Q ss_pred CCCeEEEEeCCCCC
Q 009494 336 SKDIVVVSVGKPNM 349 (533)
Q Consensus 336 ~~~~~~i~~~~~~~ 349 (533)
+...+.|......+
T Consensus 290 FekRIYIPLPe~~A 303 (439)
T KOG0739|consen 290 FEKRIYIPLPEAHA 303 (439)
T ss_pred hhcceeccCCcHHH
Confidence 44445555444433
No 296
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.53 E-value=0.36 Score=52.91 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=86.6
Q ss_pred HHHcCCCCCCHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 150 IEAAGYDMPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 150 l~~~g~~~p~p~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
+.....+.+..-|.+.+..++..+ -+++.|+-|-|||.+.-+.+.. +... .....++|.+|+.+-++.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~-------~~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARL-------AGSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHh-------cCCceEEEeCCCHHHHHHHH
Confidence 444444555555666666666543 5788999999999987766632 2221 11457999999999888777
Q ss_pred HHHHHHcCCCCCeEEEEEcC--cchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHH
Q 009494 228 EQAKLLGKGLPFKTALVVGG--DAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQV 305 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg--~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~ 305 (533)
+.+.+-...+|++....... ..... -.+...|=+-+|.... ..-+++|||||=.+. -+.+
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g~~~~~----~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL 340 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALGEIREV----SGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLL 340 (758)
T ss_pred HHHHHhHHHhCCccccccccccceeee----cCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHH
Confidence 76665555544432222111 11100 0011234445554431 115789999998763 5556
Q ss_pred HHHHHhCCCCcEEEEeccCC
Q 009494 306 MQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 306 ~~i~~~~~~~q~l~~SAT~~ 325 (533)
..++.. -+.++||.|+.
T Consensus 341 ~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 341 HKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred HHHHhh---cCceEEEeeec
Confidence 666553 25688888974
No 297
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.25 Score=54.12 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=26.0
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
.+++++||||+|.|....+ ..+.++++..+..-+++|++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEECCh
Confidence 4678999999999876543 34445555544444444444433
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=94.47 E-value=0.66 Score=45.60 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
+.++++.||+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.45 E-value=0.27 Score=49.11 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=24.2
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..++||+||+|.+........+..++...+....+.++++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4678999999988333334556666666544333444444
No 300
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.12 Score=55.62 Aligned_cols=38 Identities=11% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCC-CcEEEEe
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYS 321 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~-~q~l~~S 321 (533)
.+++++||||+|+|....+. .+.+.++.-+. ..+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 46889999999998654433 33334443332 3444444
No 301
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.38 E-value=0.09 Score=48.94 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
++++.||+|.|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5899999999999843
No 302
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.29 Score=51.61 Aligned_cols=42 Identities=12% Similarity=0.339 Sum_probs=24.7
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
..+.+++||||+|.|....+ ..+.+.++..+..-++.+.+|-
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEeCC
Confidence 35788999999998865443 3334444443333344444453
No 303
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.35 E-value=0.077 Score=54.95 Aligned_cols=39 Identities=33% Similarity=0.528 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHHHh
Q 009494 159 TPVQMQAIPSALSGKS--LLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~--~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
++.|.+.+..++.... +|+.||||||||.+ +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 6888888888775543 68899999999986 666666554
No 304
>PRK06904 replicative DNA helicase; Validated
Probab=94.35 E-value=0.7 Score=48.79 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcC-cc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG-DA 249 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg-~~ 249 (533)
.|.=+++.|.||.|||.. .+-+..++.. ..+..++|++.- .-..|+...+-......+. ..+..| .-
T Consensus 220 ~G~LiiIaarPg~GKTaf-alnia~~~a~--------~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~--~~i~~g~~l 287 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTF-AMNLCENAAM--------ASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQ--TKIRTGQNL 287 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHhhCCCCH--HHhccCCCC
Confidence 445578899999999984 4444443322 124457777643 2223333332222122221 111122 22
Q ss_pred hHHHHH-------HHHcCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh
Q 009494 250 MARQVY-------RIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 250 ~~~~~~-------~l~~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~ 298 (533)
..+++. .+.....+.| .|+..+.....+.......+++||||=.+.|..
T Consensus 288 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 288 DQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 222222 2223344555 355555443332111112578999999998753
No 305
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.18 Score=55.52 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~ 193 (533)
++-+.++||||+|||+++...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3447889999999998654433
No 306
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.12 Score=55.02 Aligned_cols=40 Identities=13% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+++++||||+|.|....+ ..+.+.++..+..-.+++.+|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEEC
Confidence 4678999999998875443 334445555443333344334
No 307
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.32 E-value=0.8 Score=44.43 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc-cc-H-HHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT-PT-R-ELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~-Pt-r-~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.+..+.+.+++|+|||..+...+.. +. ..+.++.++. .+ | ....||.. +....++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~---------~~~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~~---- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FH---------GKKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVIA---- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HH---------HcCCeEEEEecCCCCHHHHHHHHH----HhhhcCceEEe----
Confidence 4467899999999999865443322 21 1233344443 22 2 34444443 33222322221
Q ss_pred cchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc-CcHHHHHHHHHhCCC-CcEEEEeccC-
Q 009494 248 DAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAISL-PQILMYSATI- 324 (533)
Q Consensus 248 ~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~~~-~q~l~~SAT~- 324 (533)
..++..+.+.+..-. ...++++||+|-+=+.... .....+..++..... ..++.+|||.
T Consensus 136 -----------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 136 -----------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -----------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 124444433332210 1235789999999775321 122333444443333 3466789986
Q ss_pred CHHHHHHHHhhC
Q 009494 325 SQEVEKMSSSIS 336 (533)
Q Consensus 325 ~~~~~~l~~~~~ 336 (533)
.+.....++.+.
T Consensus 198 ~~d~~~~~~~f~ 209 (270)
T PRK06731 198 SKDMIEIITNFK 209 (270)
T ss_pred HHHHHHHHHHhC
Confidence 456667777654
No 308
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.31 E-value=0.097 Score=54.06 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.||||+|||..+
T Consensus 107 ~~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4567999999999999854
No 309
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.31 E-value=0.34 Score=43.15 Aligned_cols=42 Identities=7% Similarity=0.253 Sum_probs=27.9
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
...+++|+||||.|.... ...+.+.++.-+..-++++.++-+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 568999999999987544 566667777765554555555433
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.28 E-value=0.73 Score=47.00 Aligned_cols=91 Identities=15% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.+++|+|||...+. +...+. ..+.+++|+.-. +-..|+...++++.-. .....++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq-~a~~~a---------~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~--~~~l~l~~e--- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQ-VAARLA---------KRGGKVLYVSGE-ESPEQIKLRADRLGIS--TENLYLLAE--- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHH---------hcCCeEEEEECC-cCHHHHHHHHHHcCCC--cccEEEEcc---
Confidence 456689999999999985433 222222 123568888754 3346666656555321 111111111
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
...+.+.+.+.. .+.++||||+++.+.
T Consensus 145 ---------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ---------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 122334444432 256789999999875
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.27 E-value=0.59 Score=48.62 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ll 191 (533)
..++++|++|+|||.+..-
T Consensus 96 ~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3578899999999987543
No 312
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.27 E-value=0.23 Score=54.60 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=65.4
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc-cccCCCCCccEEE
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL-GRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~-~~Gldi~~v~~VI 455 (533)
.+.++++.++++.-|...++.+++. .++.+..+||+++..+|..+++...+|+.+|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4678999999999999888877643 36899999999999999999999999999999999854 4567777888877
Q ss_pred E
Q 009494 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 6
No 313
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.26 E-value=0.13 Score=50.70 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.|..+++-|...+-.+...+ ++++++.||||||.. +-++.... ...-+++.+--|.||
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i---------~~~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI---------DSDERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC---------CCcccEEEEeehhhh
Confidence 46678899999888877666 999999999999983 32222211 223378888888888
No 314
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.24 E-value=0.27 Score=54.56 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=27.3
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHH
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 329 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~ 329 (533)
...++|+||+|++... +...++..+...+++++++|-++...
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVENGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhcCceEEEEEecCCChHh
Confidence 4568999999987532 22344445556778888887655433
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.37 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ll 191 (533)
.|+.+.++||||+|||..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788899999999986543
No 316
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.19 E-value=0.073 Score=57.26 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=65.5
Q ss_pred HHHHhcCCCcEEEEcccccccCCCCCc--------cEEEEcCCCCCHhHHHHhhccccCCCCc-cEEEEEec---CcCHH
Q 009494 425 MRSFLVGEVPVIVATGILGRGVELLGV--------RQVIIFDMPNSIKEYVHQIGRASQMGDE-GTAIVFVN---EENKN 492 (533)
Q Consensus 425 ~~~f~~g~~~VLvaT~~~~~Gldi~~v--------~~VI~~d~p~s~~~y~qriGR~gR~g~~-g~~~~~~~---~~~~~ 492 (533)
-+.|..|+..|-|-+.+++.||-+..= ++-|-+.+|||.+.-+|+.||+.|.++. +--++|+- ..+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 357899999998888899999987644 3445588999999999999999998763 44444443 34888
Q ss_pred HHHHHHHHHHHcCCc
Q 009494 493 LFQELVDILKSSGAV 507 (533)
Q Consensus 493 ~~~~l~~~l~~~~~~ 507 (533)
+..-+.+.|++.|.-
T Consensus 930 FAS~VAKRLESLGAL 944 (1300)
T KOG1513|consen 930 FASIVAKRLESLGAL 944 (1300)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999998763
No 317
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.25 Score=50.38 Aligned_cols=46 Identities=15% Similarity=0.410 Sum_probs=33.0
Q ss_pred CeeEEEEecchhhhhc-CcHHHHHHHHHhC--CCCcEEEEeccCCHHHH
Q 009494 284 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~-~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~ 329 (533)
+++++++|+++.+... .....+-.++..+ ...|+++.|...|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6778999999988654 2455555566655 44588888888887664
No 318
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.11 Score=52.88 Aligned_cols=40 Identities=13% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+.+++|+||+|.|....+ ..+.+.+...+..-.+.+++|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEcC
Confidence 4678999999999865433 233334443333323344444
No 319
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.11 E-value=0.4 Score=46.76 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=29.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhccc--CCCCCceEEEEcccHHHHHHHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHS--QNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~--~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.+++++|+||-|||.+ +.+......... ....-|.+++-+|...=....+..+
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 4799999999999984 233332211111 1122366667777655444444443
No 320
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.09 E-value=0.58 Score=48.80 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=24.9
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
..|.-+++.|+||+|||..++ -+..++.. ..+..+++++
T Consensus 192 ~~g~liviag~pg~GKT~~al-~ia~~~a~--------~~g~~v~~fS 230 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLAL-NIAENVAL--------REGKPVLFFS 230 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHH-HHHHHHHH--------hCCCcEEEEE
Confidence 356668899999999998544 33333321 1245577776
No 321
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.09 E-value=0.42 Score=50.69 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.2
Q ss_pred cEEEEccCCCchhHHHHH
Q 009494 174 SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ll 191 (533)
.+|++||.|+|||.++.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999986543
No 322
>PTZ00293 thymidine kinase; Provisional
Probab=94.05 E-value=0.42 Score=44.29 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
|+=.++.||++||||.-.+- .+.+.. ..+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~---------~ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFT---------YSEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHH---------HcCCceEEEEec
Confidence 44568899999999975333 333222 245668888886
No 323
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.01 E-value=0.29 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=17.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.++++.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 33344443
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.01 E-value=0.61 Score=45.76 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999865
No 325
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.99 E-value=0.15 Score=51.87 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=31.3
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 131 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
|..+.+++++++++.+++.+. ..+..+++++|||||||.. +-.++.++.
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 334446777777766544332 1344689999999999984 455555553
No 326
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=93.94 E-value=0.02 Score=35.00 Aligned_cols=27 Identities=33% Similarity=0.858 Sum_probs=22.4
Q ss_pred CeeeeecccccccccccCCcccchHHh
Q 009494 37 PKCVICGRYGEYICDETDDDVCSLECK 63 (533)
Q Consensus 37 ~~c~~c~~~~~~~~~~~d~d~~~~~~~ 63 (533)
..|.+||..+.|.|.......||++|.
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~~CSl~C~ 29 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGARYCSLACY 29 (30)
T ss_dssp EEETSSSSEESEE-TTT--EESSHHHH
T ss_pred CCCccCcCCCEEECCCcCCceeCcEeE
Confidence 579999999999999999999999985
No 327
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.17 Score=56.42 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=24.1
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCH
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~ 326 (533)
.+.+++||||+|+|.... ...+.++++..+..-++++..|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEECCCch
Confidence 467899999999986433 3344444444333333333344333
No 328
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.33 Score=51.17 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.3
Q ss_pred EEEEccCCCchhHHHHH
Q 009494 175 LLVSANTGSGKTASFLV 191 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ll 191 (533)
+|+.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 329
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.25 Score=52.13 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=35.4
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
-|-.+|++.|--..+...|..+ .+++|--++.-.+. .-..+|+++|+|+|||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 3567899988777777777553 33443333332221 234589999999999984
No 330
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=0.61 Score=46.51 Aligned_cols=42 Identities=5% Similarity=0.179 Sum_probs=26.4
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
...+++|||+||.|.... ...+.+.++.-+..-++++.++-+
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECCh
Confidence 467899999999987543 455555555544444444444433
No 331
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.86 E-value=0.15 Score=46.34 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=27.2
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+..++++++.|++|+|||..+. .+...+.. .+..++++ +..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~---------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIR---------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHH---------TT--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhcc---------CCcceeEe-ecCceeccc
Confidence 3467899999999999998643 33444433 24446664 555665543
No 332
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.53 Score=47.31 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHhC--CC---cEEEEccCCCchhHHHH
Q 009494 158 PTPVQMQAIPSALS--GK---SLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~p~Q~~~i~~~~~--~~---~~lv~a~TGsGKT~~~l 190 (533)
.+|||...+..+.. ++ ..++.||.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 36888888888774 32 47899999999998654
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=1.1 Score=45.96 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=62.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc--ccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~--Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.-+++++|+|+|||....-.+..... ..+.++.++. +.|..+. .+++.++...++....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~---------~~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFL---------HMGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---------hcCCeEEEecccchhhhHH---HHHHHHHHhcCCCeee-------
Confidence 34778999999999875544332222 1233444444 3344433 2344444333332211
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh-hcCcHHHHHHHHHhC----CCCcEEEEeccCC
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRGFRDQVMQIFRAI----SLPQILMYSATIS 325 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~-~~~~~~~~~~i~~~~----~~~q~l~~SAT~~ 325 (533)
+..+..+...+.. .+.++|+||=+-+.. +..-...+..++... +...++.+|||..
T Consensus 285 --------------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 285 --------------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred --------------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 0112233333321 456889999766542 111223344444433 2346788899987
Q ss_pred H-HHHHHHHhh
Q 009494 326 Q-EVEKMSSSI 335 (533)
Q Consensus 326 ~-~~~~l~~~~ 335 (533)
. .+......+
T Consensus 346 ~~~~~~~~~~f 356 (432)
T PRK12724 346 YHHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHHh
Confidence 6 455555544
No 334
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.78 E-value=0.22 Score=53.82 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
....+++||||+|.|....+. .+.+.++..+..-++.+.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCeEEEEEeCCh
Confidence 456889999999988654332 3333333333333444444533
No 335
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.4 Score=49.58 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
....+++||||+|.|.... ...+...++..+..-++.+.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEeC
Confidence 4567899999999986533 2233344444334444445444
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.28 Score=52.95 Aligned_cols=43 Identities=9% Similarity=0.274 Sum_probs=24.1
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCH
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~ 326 (533)
...++|||||+|.|.... ...+.+.++..+..-++++.+|-+.
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhccCCCEEEEEecCChh
Confidence 457899999999985332 2333344443333334445555443
No 337
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.72 E-value=0.6 Score=42.50 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=74.8
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcc
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
+....+++..++|.|||.+++--+++.+ +.+.+++++-=.+--.. ..+...+....++... ..|..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~----------g~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~--~~g~~ 85 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV----------GHGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFH--VMGTG 85 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH----------HCCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEE--ECCCC
Confidence 3566899999999999998776666654 34667777753322100 1122222111122222 12211
Q ss_pred hHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc--HHHHHHHHHhCCCCcEEEEec-cCCH
Q 009494 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSA-TISQ 326 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~--~~~~~~i~~~~~~~q~l~~SA-T~~~ 326 (533)
.... ....+--.......+..... .+.-..+++||+||+=..++.++ ...+..++...+...-|.+|+ ..|+
T Consensus 86 ~~~~----~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 86 FTWE----TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred Cccc----CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 1000 00000000111122222211 12235789999999999888774 456667777666554555555 4666
Q ss_pred HHHHHHHh
Q 009494 327 EVEKMSSS 334 (533)
Q Consensus 327 ~~~~l~~~ 334 (533)
++..++..
T Consensus 161 ~Lie~ADl 168 (191)
T PRK05986 161 ELIEAADL 168 (191)
T ss_pred HHHHhCch
Confidence 66655443
No 338
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.70 E-value=0.45 Score=46.02 Aligned_cols=126 Identities=20% Similarity=0.279 Sum_probs=63.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc---HHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT---RELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt---r~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.|.=+++.|.||.|||..++- +..++.. ..+..+++++.- .+++..+... . ...+ ...+..|
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~-ia~~~a~--------~~~~~vly~SlEm~~~~l~~R~la~---~-s~v~--~~~i~~g 82 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQ-IALNAAL--------NGGYPVLYFSLEMSEEELAARLLAR---L-SGVP--YNKIRSG 82 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHH-HHHHHHH--------TTSSEEEEEESSS-HHHHHHHHHHH---H-HTST--HHHHHCC
T ss_pred cCcEEEEEecccCCchHHHHH-HHHHHHH--------hcCCeEEEEcCCCCHHHHHHHHHHH---h-hcch--hhhhhcc
Confidence 344578899999999985444 4443332 224668888853 3443332222 1 1111 1111112
Q ss_pred cchHHHHHHHH------cCCceee-c----CHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc----CcHHHHHHHHHh
Q 009494 248 DAMARQVYRIQ------QGVELIV-G----TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR----GFRDQVMQIFRA 311 (533)
Q Consensus 248 ~~~~~~~~~l~------~~~~Iii-~----Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~----~~~~~~~~i~~~ 311 (533)
.....+..++. ....+.| . |++.+.+.+.........+++||||=.|.|... +....+..+...
T Consensus 83 ~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~ 161 (259)
T PF03796_consen 83 DLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRE 161 (259)
T ss_dssp GCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHH
Confidence 22222222221 1223332 2 455665555443222368899999999988763 244555555443
No 339
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.69 E-value=0.32 Score=47.15 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHh----CCC-cEEEEccCCCchhHHH
Q 009494 157 MPTPVQMQAIPSAL----SGK-SLLVSANTGSGKTASF 189 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~ 189 (533)
.+++.+.+++..+. .+. .+++.|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 34566666666543 233 5889999999999853
No 340
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.66 E-value=0.36 Score=44.86 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHh
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~ 311 (533)
..+.+.||+||||.|.+. -...+++.++-
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEi 139 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEI 139 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHH
Confidence 367889999999998753 34555555443
No 341
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.5 Score=51.28 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..+.+++||||+|.|....+ ..+.+.++..+..-+++|.+|
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEeC
Confidence 45688999999999865432 333344444433333334334
No 342
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.42 Score=52.16 Aligned_cols=40 Identities=13% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+.+++||||+|.|....+ ..+.+.+...+..-.+++.+|
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEeC
Confidence 4678999999998764333 334444554433333333434
No 343
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.61 E-value=0.22 Score=51.76 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=64.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc-c-cHHHHHHHHHHHHHHcCCCCCeEEEEEcCcc
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT-P-TRELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~-P-tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
++.+++.+|||+|||.+....+...... ..+.++.++. . .|.-+. .+++.+....++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~--------~~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL--------YGKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEECCccHHHHH---HHHHHHHHHhCCceE-------
Confidence 4568889999999998654333322201 1233344443 3 332222 233333332232221
Q ss_pred hHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc-CcHHHHHHHHHhC--CCCcEEEEeccCCH
Q 009494 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQ 326 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~--~~~q~l~~SAT~~~ 326 (533)
.+.++..+...+.. +.+.++|+||.+-+.... .....+..++... +....+.+|||...
T Consensus 283 --------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 283 --------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred --------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 12344444444442 235789999998653211 1223445555521 33457788888764
Q ss_pred -HHHHHHHhh
Q 009494 327 -EVEKMSSSI 335 (533)
Q Consensus 327 -~~~~l~~~~ 335 (533)
.+..+...+
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 445555544
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.60 E-value=0.64 Score=45.28 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCeeEEEEecchhhhhc-CcHHHHHHHHHhC-------CCCcEEEEeccCCHHHHHHHHhh
Q 009494 283 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-------SLPQILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~-------~~~q~l~~SAT~~~~~~~l~~~~ 335 (533)
.++++||+|=+-++... ....++..+.+.. +...++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45678888887765321 1223344443322 44567888888765444444443
No 345
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.60 E-value=0.81 Score=43.40 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|.-+++.+++|+|||..++-.+. .+.. .+.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~-~~~~---------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY-GFLQ---------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHh---------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 567789999999999986433333 2221 24567888844 3334555555544
No 346
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.57 E-value=0.11 Score=52.19 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=29.9
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 168 SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 168 ~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+..+.+++++|+||||||.. +-.++..+ ....+++.+-.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i----------~~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI----------PPQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc----------CCCCCEEEECCCccc
Confidence 344788999999999999983 33333322 123457777788777
No 347
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.65 Score=47.76 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHH
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~ 328 (533)
...+++||||+|+|.... ...+.+.++.-+...++++++|-+..+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECChHHC
Confidence 567899999999996543 344555555555555566666544433
No 348
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.52 E-value=0.23 Score=49.79 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+..+++++++|+||||||.. +-.++..+ ....+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i----------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI----------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC----------CCCCeEEEecCCCcc
Confidence 34788999999999999983 34444433 123456666666666
No 349
>PRK08840 replicative DNA helicase; Provisional
Probab=93.42 E-value=0.5 Score=49.76 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=24.5
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
..|.-+++.|.||.|||..+ +-+...+.. ..+..++|++.
T Consensus 215 ~~g~LiviaarPg~GKTafa-lnia~~~a~--------~~~~~v~~fSl 254 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFA-MNLCENAAM--------DQDKPVLIFSL 254 (464)
T ss_pred CCCceEEEEeCCCCchHHHH-HHHHHHHHH--------hCCCeEEEEec
Confidence 34556788999999999854 333333321 12445777763
No 350
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.39 E-value=0.24 Score=55.55 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..++|-|.+++.. ....++|.|..|||||.+.. --+.+++... .-...++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~-~ria~Li~~~-----~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLT-HRIAHLIAEK-----NVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHH-HHHHHHHHcC-----CCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3578999999975 35679999999999998743 3344444311 0122469999999999888888777654
No 351
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.39 E-value=0.42 Score=54.52 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCCCCCccEEE
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-|...++.+++. .++.+..++|..+..++..+++.+.+|+.+|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3578999999999999998887743 356778899999999999999999999999999997 445667888888887
Q ss_pred E
Q 009494 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 6
No 352
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.37 E-value=0.067 Score=50.47 Aligned_cols=44 Identities=25% Similarity=0.459 Sum_probs=28.2
Q ss_pred CcccCcccCCCCHHHHHH-HHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHH
Q 009494 132 APILSFSSCSLSQKLLQN-IEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVIS 195 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~-l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~ 195 (533)
..|..|++++||+.+.+. +.+.| -++++++|||||+.. +..++.
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRG-------------------LviiVGaTGSGKSTt-mAaMi~ 149 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRG-------------------LVIIVGATGSGKSTT-MAAMIG 149 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCc-------------------eEEEECCCCCCchhh-HHHHhc
Confidence 355677888888666542 12222 278899999999986 334443
No 353
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.37 E-value=0.55 Score=46.89 Aligned_cols=41 Identities=7% Similarity=0.192 Sum_probs=26.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
....++||+||||.|... -...+.+.+..-+....+++++.
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 367899999999998753 34555555555444444555444
No 354
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.31 E-value=0.14 Score=55.13 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHH-HHHHH
Q 009494 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE-QAKLL 233 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~-~~~~~ 233 (533)
..+|+|.+.+..+-.. +.+.+..++-+|||.+. +-++-+.+. .....+|++.||.++|..+.+ .+..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~--------~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSID--------QDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEE--------eCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5679999999887754 57899999999999953 333333333 223459999999999998653 45544
Q ss_pred cCCCCCeEEEEEc----CcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 234 GKGLPFKTALVVG----GDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 234 ~~~~~~~~~~~~g----g~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
....+.-...+.. ..........+. +..+.++.-+. -..+.-..++++++||+|.+.
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhcc
Confidence 4433211111111 000111111112 33344332111 112344568899999999884
No 355
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.28 E-value=1.6 Score=45.21 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q 009494 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~l 190 (533)
-++++|++|+|||++..
T Consensus 102 vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT 118 (429)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998654
No 356
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.27 E-value=0.15 Score=49.91 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
++.++++||||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999998644
No 357
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=2 Score=43.76 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=19.7
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
...-+||+||+|.|.+..- ..+..++...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 4456799999999987653 4455554443
No 358
>PRK04195 replication factor C large subunit; Provisional
Probab=93.17 E-value=0.71 Score=49.09 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999853
No 359
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.35 Score=51.73 Aligned_cols=40 Identities=10% Similarity=0.269 Sum_probs=23.7
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+.+++||||+|+|.... ...+...++..+..-++++.+|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 467899999999987543 3344455555433333333334
No 360
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.15 E-value=0.91 Score=42.90 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=30.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|..+++.+++|+|||..++..+...+ . .+..++++.- .+...++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~---------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R---------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h---------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 467799999999999985443333322 1 2445777764 33334554444444
No 361
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.13 E-value=1 Score=45.12 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhC--CC---cEEEEccCCCchhHHHHH
Q 009494 158 PTPVQMQAIPSALS--GK---SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 158 p~p~Q~~~i~~~~~--~~---~~lv~a~TGsGKT~~~ll 191 (533)
.+|||...|..+.. ++ ..++.||.|.|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 36889888888773 33 478999999999986443
No 362
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.11 E-value=0.47 Score=51.04 Aligned_cols=42 Identities=7% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
...+++|+||+|.|.... ...+...+...+..-++.+.+|-+
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEECCCh
Confidence 356789999999885433 334444455444444444444544
No 363
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.10 E-value=0.24 Score=50.13 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+..++++||||||||.. +..++..+.. ..+.+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~--------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINK--------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCc--------CCCCEEEEEcCChhh
Confidence 356789999999999985 3344443321 223456666555554
No 364
>PRK05973 replicative DNA helicase; Provisional
Probab=93.09 E-value=0.23 Score=47.13 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.++|... ...-+..|.-++|.|++|+|||...+--+...+. .+.+++|++-- +=..|+.+.+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~----------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK----------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 4666333 4444556778899999999999865444443321 25568887643 2245566666555
No 365
>PRK10436 hypothetical protein; Provisional
Probab=93.02 E-value=0.14 Score=53.66 Aligned_cols=37 Identities=35% Similarity=0.515 Sum_probs=24.6
Q ss_pred HHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 160 PVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 160 p~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
+-|.+.+..+. .+.-++++||||||||.. +..++..+
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 44555555544 344588999999999985 34555554
No 366
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.00 E-value=0.62 Score=49.55 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHHH
Q 009494 175 LLVSANTGSGKTASFL 190 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~l 190 (533)
.|+.||+|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999998654
No 367
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.92 E-value=1.2 Score=45.19 Aligned_cols=128 Identities=12% Similarity=0.068 Sum_probs=55.5
Q ss_pred EEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH-H---HHHHHHHcCCCCCeEEEE--EcCcc
Q 009494 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ-V---EEQAKLLGKGLPFKTALV--VGGDA 249 (533)
Q Consensus 176 lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q-~---~~~~~~~~~~~~~~~~~~--~gg~~ 249 (533)
++.++.|+|||.+....++..++.. .....++++ ++..-+.. + ...+..+... .+..... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~-------~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR-------PPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS-------SS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC-------CCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE
Confidence 4788999999998877777776541 112445555 55544443 2 2233333333 1222111 11110
Q ss_pred hHHHHHHHHcCCceeecCHHHH--HHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 250 MARQVYRIQQGVELIVGTPGRL--IDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iii~Tp~~l--~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.. .++..|.+.+-..- ..-+. -..++++++||+-.+.+..+...+............+.+|.|
T Consensus 72 ~~------~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p 136 (384)
T PF03237_consen 72 IL------PNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTP 136 (384)
T ss_dssp EE------TTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE-
T ss_pred Ee------cCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecC
Confidence 00 34455655553211 11111 156789999998877654444444444333333333244443
No 368
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.86 E-value=1.2 Score=45.07 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=24.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcE-EEEe
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQI-LMYS 321 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~-l~~S 321 (533)
.....++||||+|.|.... ...+.+.++..+...+ +++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999986433 3445555665443333 4444
No 369
>PRK08006 replicative DNA helicase; Provisional
Probab=92.83 E-value=1.5 Score=46.19 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=53.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.|.||.|||..+ +-+..++.. ..+..++|++.- .-..|+...+-....... ...+..|.-.
T Consensus 223 ~G~LiiIaarPgmGKTafa-lnia~~~a~--------~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~--~~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFA-MNLCENAAM--------LQDKPVLIFSLE-MPGEQIMMRMLASLSRVD--QTRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHHhcCCC--HHHhhcCCCC
Confidence 3455788999999999754 433333321 124457777632 122333322221111111 1111122222
Q ss_pred HHHHHH-------HHcCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQVYR-------IQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~-------l~~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
.+++.+ +.....+.| .|+..+....++-......+++||||=.|.|.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 232222 213334444 24555544443211111357899999999875
No 370
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.80 E-value=1.1 Score=48.61 Aligned_cols=41 Identities=12% Similarity=0.322 Sum_probs=25.0
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..+.+++||||+|.|.... ...+.+.++..+..-++.+.+|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEeC
Confidence 3578899999999886543 3445555555444334444445
No 371
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.47 Score=51.63 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=23.4
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..+.+++||||+|.|.... ...+...++..+..-++.+.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEeC
Confidence 4567899999999986543 2334444444333333334434
No 372
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.2 Score=50.16 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
+|++..+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999984
No 373
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.62 Score=50.33 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=24.5
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
.+.+++||||+|.|.... ...+...++..+..-++.+.+|-
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEeCC
Confidence 568899999999987544 33444455544433333333353
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.75 E-value=1.4 Score=41.82 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|.-+++.|++|+|||..+...+...+ ..+.+++++.--.. ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~----------~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL----------KQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH----------hCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 456689999999999986544333332 13556777775433 35555666555
No 375
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.72 E-value=1 Score=44.89 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=27.2
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
....+++|||+||+|.... ...+.+.++.-+..-++++.++-+
T Consensus 106 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEECCh
Confidence 4568899999999986443 455556666544444444544433
No 376
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.71 E-value=0.3 Score=50.42 Aligned_cols=130 Identities=20% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
++-+.++||||+|||......+-..+... +.....++.+.+.-.+ ..+++..++..+++....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-------~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~-------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-------GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRS-------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceec--------
Confidence 45688899999999986543322222110 1123355666553332 223344444433333322
Q ss_pred HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCH-HH
Q 009494 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQ-EV 328 (533)
Q Consensus 252 ~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~-~~ 328 (533)
+.++..+...+. .+.+.+++++|.+-+.-. .....++..+.... +...++.+|||... .+
T Consensus 254 -------------v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~ 316 (420)
T PRK14721 254 -------------IKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL 316 (420)
T ss_pred -------------CCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH
Confidence 222333322222 245667899998643210 01122333322211 33456788999644 44
Q ss_pred HHHHHhh
Q 009494 329 EKMSSSI 335 (533)
Q Consensus 329 ~~l~~~~ 335 (533)
......+
T Consensus 317 ~~~~~~f 323 (420)
T PRK14721 317 DEVISAY 323 (420)
T ss_pred HHHHHHh
Confidence 5555444
No 377
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.70 E-value=1.4 Score=39.07 Aligned_cols=52 Identities=15% Similarity=0.354 Sum_probs=35.6
Q ss_pred CCCeeEEEEecchhhhhcCc--HHHHHHHHHhCCCCc-EEEEeccCCHHHHHHHH
Q 009494 282 LDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQ-ILMYSATISQEVEKMSS 333 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~--~~~~~~i~~~~~~~q-~l~~SAT~~~~~~~l~~ 333 (533)
...+++||+||+=...+.++ ...+..+++..+... +|+.+-..|+++..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877663 456667777665554 55555566776666543
No 378
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.99 Score=49.18 Aligned_cols=41 Identities=15% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
....++|||||+|.|.... ...+...+...+..-++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEEEeC
Confidence 3567899999999886533 2333444444343444444444
No 379
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.57 E-value=0.37 Score=44.00 Aligned_cols=31 Identities=39% Similarity=0.494 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHh-CCCcEEEEccCCCchhHH
Q 009494 158 PTPVQMQAIPSAL-SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 158 p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~ 188 (533)
.++-|.+.+.... .++.+++++|||||||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566777776655 678899999999999984
No 380
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.56 E-value=1.5 Score=46.02 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.|+||+|||.. ++-+..++.. ..+..+++++.- .-..|+...+.......+... +..|.-.
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~--------~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~--~~~g~l~ 261 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAI--------KEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQK--LRTGKLS 261 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHH--------hCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--hccCCCC
Confidence 455678899999999974 4434443322 224557777633 222333333322222222111 1122222
Q ss_pred HHHH-------HHHHcCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQV-------YRIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~-------~~l~~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
..++ ..+.+ ..+.| .|+..+...+.+-... ..+++||||=.+.|.
T Consensus 262 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2222 22222 23443 2455554443321111 247899999998775
No 381
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.50 E-value=0.14 Score=48.45 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=12.2
Q ss_pred EEEEccCCCchhHH
Q 009494 175 LLVSANTGSGKTAS 188 (533)
Q Consensus 175 ~lv~a~TGsGKT~~ 188 (533)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 382
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.46 E-value=0.56 Score=50.94 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
.+++++||||+|+|....|. .+.+.++..+..-++++.+|-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEECCc
Confidence 46889999999998654433 2333333333333344444543
No 383
>PRK05748 replicative DNA helicase; Provisional
Probab=92.38 E-value=1.4 Score=46.28 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=54.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHcCCCCCeEEEEEcCcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~~~~~~~gg~~ 249 (533)
.|.-++|.|.||.|||.. .+-++.++.. ..+..+++++.- .-..|+...+- ..+ ..+. ..+..|.-
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~--------~~g~~v~~fSlE-ms~~~l~~R~l~~~~-~v~~--~~i~~~~l 268 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVAT--------KTDKNVAIFSLE-MGAESLVMRMLCAEG-NIDA--QRLRTGQL 268 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHH--------hCCCeEEEEeCC-CCHHHHHHHHHHHhc-CCCH--HHhhcCCC
Confidence 455688899999999984 4444444321 224457776532 22233333332 222 1111 11112222
Q ss_pred hHHHHHHH------HcCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 250 MARQVYRI------QQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 250 ~~~~~~~l------~~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
...++..+ ..+..+.| .|+..+...+.+.......+++||||=.+.|.
T Consensus 269 ~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 22222221 12233444 24555544433211111257899999999874
No 384
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.37 E-value=1.2 Score=44.20 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=27.0
Q ss_pred CCCeeEEEEecchhhh--hcCcHHHHHHHHHhC--CCCcEEEEeccCCHHHH
Q 009494 282 LDDIRMFVLDEVDCML--QRGFRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 282 l~~~~~vVvDEah~~~--~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~ 329 (533)
+.+++++|+||+..-. +|.....+..|+... ....+++.|.-.+.+..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 3577899999997432 222112344555432 55666776665444433
No 385
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=3.6 Score=43.03 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh--------CC----CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCC
Q 009494 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL--------SG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~--------~~----~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
+|.+++-++.....|...-.|.=.+.+.... +. .++++.+|.|||||..+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 5788888888888776544444444443311 11 25899999999999754332221
Q ss_pred CCCceEEEEcccH
Q 009494 208 QKNPLAMVLTPTR 220 (533)
Q Consensus 208 ~~~~~~Lil~Ptr 220 (533)
...|.+=++.|..
T Consensus 562 S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 562 SDFPFVKIISPED 574 (744)
T ss_pred cCCCeEEEeChHH
Confidence 4578888888863
No 386
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.28 E-value=2 Score=42.76 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=22.0
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCC-CcEEEEe
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYS 321 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~-~q~l~~S 321 (533)
..++|++||+|.+.... ...+..++...+. ..+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46789999999885432 3445555554433 3444433
No 387
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.28 E-value=0.25 Score=47.17 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=35.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|..+++.|++|+|||..++--+...+. .+.++++++- .+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----------~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 4567899999999999865544444332 3566888884 455566666666553
No 388
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.73 Score=49.43 Aligned_cols=30 Identities=13% Similarity=0.464 Sum_probs=19.2
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
..+.+++||||+|.|....+ ..+.+.++..
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEep 146 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEP 146 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCC
Confidence 35678999999998865443 2333444443
No 389
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.27 E-value=1.2 Score=42.39 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=30.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcc--cCCCCCceEEEEc---ccHHHHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHH--SQNQKNPLAMVLT---PTRELCIQVEEQ 229 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~~~~Lil~---Ptr~L~~Q~~~~ 229 (533)
-.++.||.|+|||...+-.++.......+.. .....+.++||+. |..++...+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAI 63 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHH
Confidence 3689999999999865544444332211111 1112456788888 444444433333
No 390
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.23 E-value=0.81 Score=48.68 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH-cCCCCCe-EEEEEcCcc
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL-GKGLPFK-TALVVGGDA 249 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~-~~~~~~~-~~~~~gg~~ 249 (533)
.+-.+..-|---|||. |+.|++..++. .-.+-++.|+++-+..++-+.+++..- .+-++-+ +...-+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~-------s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~--- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLK-------NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD--- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHH-------hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC---
Confidence 4556778899999997 68899888775 245778999999998887766665422 1112211 111111
Q ss_pred hHHHHHHHHcCCceeecCHHH-----HHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--CCCcEEEEec
Q 009494 250 MARQVYRIQQGVELIVGTPGR-----LIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSA 322 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iii~Tp~~-----l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~~~q~l~~SA 322 (533)
-.|.+.-|+. +......+...-+++.+++|||||-+. ...+..|+-.+ .+.++|++|.
T Consensus 271 -----------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 271 -----------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred -----------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 1222222221 111233345556789999999999664 34455555555 6778888887
Q ss_pred c
Q 009494 323 T 323 (533)
Q Consensus 323 T 323 (533)
|
T Consensus 336 ~ 336 (668)
T PHA03372 336 T 336 (668)
T ss_pred C
Confidence 7
No 391
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.16 E-value=0.53 Score=46.66 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=23.0
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
+=.++.+||+|++.. .+-..++-+..+--++++.||-
T Consensus 222 rkTilFiDEiHRFNk----sQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNK----SQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred ceeEEEeHHhhhhhh----hhhhcccceeccCceEEEeccc
Confidence 345689999999642 2233344444556677777773
No 392
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.10 E-value=4 Score=40.63 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=63.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
+.+.+.|+-|.|||. ++-++-+.+-. .. -.-++.-.-+..+++.+..+.... .+...
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~-------~~----k~R~HFh~FM~~vH~~l~~l~g~~----------dpl~~ 122 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG-------ER----KRRLHFHRFMARVHQRLHTLQGQT----------DPLPP 122 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc-------cc----cccccHHHHHHHHHHHHHHHcCCC----------CccHH
Confidence 568899999999997 45444433221 11 123566677777777777664110 11112
Q ss_pred HHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCHHH
Q 009494 253 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 253 ~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~ 328 (533)
... ++ ..+..++++||.| +.|-+=.-.+.++++.+ ....++.+|.|.|+++
T Consensus 123 iA~-----------------~~-------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 123 IAD-----------------EL-------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HHH-----------------HH-------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 111 11 2345679999998 34433233344455544 5788899999988654
No 393
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.04 E-value=0.83 Score=53.49 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccCCCCCccEEE
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~---~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-|...++.+.+.. ++.+..+++..+..++..+++.+.+|..+|+|+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 46789999999999999988887432 467778999999999999999999999999999974 44556677888877
Q ss_pred E
Q 009494 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 394
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=2.4 Score=43.22 Aligned_cols=41 Identities=10% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
-....++||||+|.|.... ...+.+.++..+...++++.+.
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEEC
Confidence 3567899999999885433 4455566665544444444433
No 395
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.82 E-value=0.69 Score=44.02 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCC----CcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhcccc-CCCCcc
Q 009494 406 GMKALSIHGEKPMKERREIMRSFLVGE----VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS-QMGDEG 480 (533)
Q Consensus 406 ~~~~~~~h~~~~~~er~~~~~~f~~g~----~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~g-R~g~~g 480 (533)
++.+..++++.+... -.|.++. ..|+|+=+.++||+.+.++.+......+...+.+.||.---| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666776554322 2344433 678899999999999999999999999998888888653344 777788
Q ss_pred EEEEEecCcCHHHHHHHHHHHHH
Q 009494 481 TAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
.|-+++++.-...|..+.+.-+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~e~ 207 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAEEE 207 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHHHH
Confidence 99999998766666665554443
No 396
>PRK07004 replicative DNA helicase; Provisional
Probab=91.82 E-value=1.2 Score=46.92 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc---ccHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT---PTRELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~---Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.|.-+++.|.||+|||.. .+-+..++.. ..+..+++++ +..+|+..+. ...+ ++....+..|
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~~~a~--------~~~~~v~~fSlEM~~~ql~~R~l---a~~~---~v~~~~i~~g 276 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGEYVAV--------EYGLPVAVFSMEMPGTQLAMRML---GSVG---RLDQHRMRTG 276 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHHHHHH--------HcCCeEEEEeCCCCHHHHHHHHH---Hhhc---CCCHHHHhcC
Confidence 455678899999999985 3433333321 2244577765 3334433222 1111 1111111122
Q ss_pred cchHHHHHHH------HcCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 248 DAMARQVYRI------QQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 248 ~~~~~~~~~l------~~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
.....++.++ ..+..+.| .|+..+.....+-......+++||||=.+.|.
T Consensus 277 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 277 RLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 2222222221 12344554 34445444332211112347899999999885
No 397
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.74 E-value=0.24 Score=53.54 Aligned_cols=38 Identities=34% Similarity=0.392 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 159 TPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 159 ~p~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.+-|.+.+..+.. +..++++||||||||.+ +..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 3556666655553 34578999999999985 34555544
No 398
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.73 E-value=0.28 Score=46.10 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=31.3
Q ss_pred eecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh-h----cCcHHHHHHHHHhC--CCCcEEEEeccCC
Q 009494 264 IVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-Q----RGFRDQVMQIFRAI--SLPQILMYSATIS 325 (533)
Q Consensus 264 ii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~-~----~~~~~~~~~i~~~~--~~~q~l~~SAT~~ 325 (533)
...+...+...+...... -+||+||+|.+. . ..+...+..++... .....+.++++-.
T Consensus 102 ~~~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp -G--HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred HHHHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 344555566666554322 689999999998 2 23445555666553 2333445566543
No 399
>PRK08760 replicative DNA helicase; Provisional
Probab=91.69 E-value=1.2 Score=47.00 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-++|.|.||.|||..++ -+...+.. ..+..++|++.-- -..|+...+.......+... +..|...
T Consensus 228 ~G~LivIaarPg~GKTafal-~iA~~~a~--------~~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~--i~~g~l~ 295 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFAL-NIAEYAAI--------KSKKGVAVFSMEM-SASQLAMRLISSNGRINAQR--LRTGALE 295 (476)
T ss_pred CCceEEEEeCCCCChhHHHH-HHHHHHHH--------hcCCceEEEeccC-CHHHHHHHHHHhhCCCcHHH--HhcCCCC
Confidence 34557889999999998543 33333321 1244577776432 22344443333222222111 1122222
Q ss_pred HHHHHHH------HcCCceeec-----CHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQVYRI------QQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l------~~~~~Iii~-----Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
..++.++ ..+..+.|. |++.+.....+-. .-..+++||||=.+.|.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 2222211 122344432 4555544443211 11347899999999774
No 400
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.68 E-value=0.67 Score=46.56 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHH
Q 009494 158 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~p~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~l 190 (533)
.+|||...+..+. +|+ -.++.||.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5688888887765 343 47899999999998643
No 401
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.63 E-value=0.2 Score=54.02 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHhC--------CC--cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH
Q 009494 156 DMPTPVQMQAIPSALS--------GK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~--------~~--~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
..++..|.+++-...+ |. ..||-...|-||--+..--++...+ ...+++|++.-+..|--.
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL---------kGRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL---------KGRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh---------cccceeEEEEeccccccc
Confidence 3567788888866542 22 3566555555554322222344333 345779999999888777
Q ss_pred HHHHHHHHcCCCCCeEEEEE----cCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC-------------CCCCCeeEE
Q 009494 226 VEEQAKLLGKGLPFKTALVV----GGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-------------IELDDIRMF 288 (533)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~----gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~-------------~~l~~~~~v 288 (533)
..+.++..+.. ++.+..+. +..+..+. .. -+--|+++|+..|+--.+... ..-..=++|
T Consensus 334 AERDL~DigA~-~I~V~alnK~KYakIss~en-~n--~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGAT-GIAVHALNKFKYAKISSKEN-TN--TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCCC-Cccceehhhccccccccccc-CC--ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 77777665432 33333221 10000000 00 013599999987754333110 011224589
Q ss_pred EEecchhhhhc---------CcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 289 VLDEVDCMLQR---------GFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 289 VvDEah~~~~~---------~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
|+||||.-.+. ..+..+..+-+.++..+++..|||-
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATG 454 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccC
Confidence 99999986541 1567888888899999999999994
No 402
>PRK13764 ATPase; Provisional
Probab=91.61 E-value=0.39 Score=51.76 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.+++++++|+||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999984 44455444
No 403
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.60 E-value=1.6 Score=39.86 Aligned_cols=41 Identities=5% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.....+|||||+|.+.... ...+...++..+..-++.+.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 3568899999999986432 3334444444333333444433
No 404
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.58 E-value=3.4 Score=42.96 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=15.6
Q ss_pred cEEEEccCCCchhHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~ 193 (533)
-+++++++|+|||.+..-.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37889999999998755433
No 405
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.58 E-value=0.28 Score=53.35 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=21.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
+++-.++|+|||..-+|...+..+...+..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 4455778888888777776666666666544
No 406
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.55 E-value=0.65 Score=51.93 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=66.3
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc---C-CeEEE-EeCCCCHHHHHHHHHHHhcCCCcEEEEcccc-cccCCC-C--C
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT---G-MKALS-IHGEKPMKERREIMRSFLVGEVPVIVATGIL-GRGVEL-L--G 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~---~-~~~~~-~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~-~~Gldi-~--~ 450 (533)
.+.++++.++|..-+...++.|.+.. + ..+.. +|+.++.++++.+++.|.+|+.+|||+|..+ ..-.+. . +
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 35789999999998888888886321 2 33332 9999999999999999999999999999753 333331 1 3
Q ss_pred ccEEEEcCC------CCCHhHHHHhhc
Q 009494 451 VRQVIIFDM------PNSIKEYVHQIG 471 (533)
Q Consensus 451 v~~VI~~d~------p~s~~~y~qriG 471 (533)
.++|+.-|. ..|++.....+|
T Consensus 204 FdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 204 FDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred CCEEEEccHHHHHhccccHHHHHHHcC
Confidence 566665443 356666666666
No 407
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.54 E-value=0.27 Score=52.48 Aligned_cols=104 Identities=17% Similarity=0.317 Sum_probs=66.6
Q ss_pred CCeEEEEcchhhHHHHHHHHHhhcC-------CeEEEEeCCCCHHHHHHHHHHHhc----CCCcEEEEc--ccccccCCC
Q 009494 382 PPAVVYVGSRLGADLLSNAISVTTG-------MKALSIHGEKPMKERREIMRSFLV----GEVPVIVAT--GILGRGVEL 448 (533)
Q Consensus 382 ~~~LVf~~s~~~a~~l~~~L~~~~~-------~~~~~~h~~~~~~er~~~~~~f~~----g~~~VLvaT--~~~~~Gldi 448 (533)
+-+++|++|..-...+.+.+. ..| .+.+.+-...+ -+.+++.|.. |.-.+|+|. +-+++|||+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~-~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWE-QNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHH-hcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 468899999888888777776 333 22223322222 3455555543 444566654 678999999
Q ss_pred CC--ccEEEEcCCCCC--------------------------------HhHHHHhhccccCCCCccEEEEEecCc
Q 009494 449 LG--VRQVIIFDMPNS--------------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 449 ~~--v~~VI~~d~p~s--------------------------------~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
.+ .+.|+..++|.. +....|-||||-|.-+.=.++++++.+
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 76 577888776631 112368999999987666667777643
No 408
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.54 E-value=1.3 Score=39.67 Aligned_cols=52 Identities=15% Similarity=0.354 Sum_probs=35.4
Q ss_pred CCCeeEEEEecchhhhhcCc--HHHHHHHHHhCCCCc-EEEEeccCCHHHHHHHH
Q 009494 282 LDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQ-ILMYSATISQEVEKMSS 333 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~--~~~~~~i~~~~~~~q-~l~~SAT~~~~~~~l~~ 333 (533)
-..+++||+||+-...+.++ ...+..+++..+... +|++.-..|+++..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998887773 456667777665554 45555556776666544
No 409
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.42 E-value=0.82 Score=49.35 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..+.+++||||+|.|.... ...+...++..+..-++.+.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCEEEEEecC
Confidence 3577899999999886433 2333344444334344444444
No 410
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.41 E-value=3.3 Score=46.50 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
..++++.||+|+|||..+-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4589999999999998643
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.25 E-value=2.9 Score=41.35 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=66.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc--ccHHHHHHHHHHHHHHcCCCCCeEEE-EEcCcchH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTAL-VVGGDAMA 251 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~--Ptr~L~~Q~~~~~~~~~~~~~~~~~~-~~gg~~~~ 251 (533)
+++++-.|+|||++..- +.+++. ..+.++++.+ -.|+-|. ++++.|++..+..++. -+|+++..
T Consensus 142 il~vGVNG~GKTTTIaK--LA~~l~--------~~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK--LAKYLK--------QQGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA 208 (340)
T ss_pred EEEEecCCCchHhHHHH--HHHHHH--------HCCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH
Confidence 67899999999986432 333332 3455666665 2344444 2333333334555555 23444332
Q ss_pred HHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc-CcHHHHHHHHHhC-------CCCcEEEEecc
Q 009494 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-------SLPQILMYSAT 323 (533)
Q Consensus 252 ~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~-~~~~~~~~i~~~~-------~~~q~l~~SAT 323 (533)
--. +-++.. .-+++++|++|=|-||-+. +.-..+..|.+-+ |..-++.+=||
T Consensus 209 Vaf------------------DAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 209 VAF------------------DAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HHH------------------HHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 211 111111 1246777888888877543 2344455554444 11234444788
Q ss_pred CCHHHHHHHHhh
Q 009494 324 ISQEVEKMSSSI 335 (533)
Q Consensus 324 ~~~~~~~l~~~~ 335 (533)
.-+.....++.+
T Consensus 269 tGqnal~QAk~F 280 (340)
T COG0552 269 TGQNALSQAKIF 280 (340)
T ss_pred cChhHHHHHHHH
Confidence 776665555544
No 412
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.25 E-value=0.23 Score=51.20 Aligned_cols=47 Identities=30% Similarity=0.340 Sum_probs=35.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
++++.|+||||||.++.+|-+.. ....++|+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999998887643 134588888999998765555443
No 413
>PRK05595 replicative DNA helicase; Provisional
Probab=91.24 E-value=1.1 Score=47.16 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|.-+++.|.||.|||..+ +-+..++.. ..+.++++++.-
T Consensus 200 ~g~liviaarpg~GKT~~a-l~ia~~~a~--------~~g~~vl~fSlE 239 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFA-LNIAEYAAL--------REGKSVAIFSLE 239 (444)
T ss_pred CCcEEEEEecCCCChHHHH-HHHHHHHHH--------HcCCcEEEEecC
Confidence 3455778999999999854 333333221 124567777643
No 414
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.10 E-value=12 Score=40.46 Aligned_cols=43 Identities=9% Similarity=0.332 Sum_probs=27.4
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISK 337 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~ 337 (533)
..++|+.+|-|.++ ...+.. .+-+++..+|+-+ +..+...++.
T Consensus 525 ~~lky~lL~pA~~f-----~evv~e------aravvLAGGTMeP-~~e~~e~L~~ 567 (821)
T KOG1133|consen 525 GTLKYMLLNPAKHF-----AEVVLE------ARAVVLAGGTMEP-VDELREQLFP 567 (821)
T ss_pred ceEEEEecCcHHHH-----HHHHHH------hheeeecCCcccc-HHHHHHHhcc
Confidence 34788888888764 222222 3557888899876 5666665544
No 415
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.08 E-value=3.2 Score=37.44 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=71.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH-HHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-EEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
++|.-..|-|||.+++-.+++.+ +.|.+++|+.=-+--...= +..+.++. ..+....+--|..-..+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~----------GhG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~ 98 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL----------GHGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQ 98 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh----------cCCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCc
Confidence 56667778889998877776654 5677788775222110100 12222331 11111111111111110
Q ss_pred HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc--HHHHHHHHHhCCCCcEEEEecc-CCHHHHH
Q 009494 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSAT-ISQEVEK 330 (533)
Q Consensus 254 ~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~--~~~~~~i~~~~~~~q~l~~SAT-~~~~~~~ 330 (533)
.. ..++ ......+..... .+.-..+++||+||.-..+..++ ...+..++..-|..+-|.+|+. .|+.+.+
T Consensus 99 ~~----~~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 99 DR----EADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred Cc----HHHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 00 0022 222222222211 12234689999999998887773 4566666776677776766665 5666666
Q ss_pred HHHh
Q 009494 331 MSSS 334 (533)
Q Consensus 331 l~~~ 334 (533)
++..
T Consensus 172 ~ADl 175 (198)
T COG2109 172 LADL 175 (198)
T ss_pred HHHH
Confidence 5543
No 416
>PRK06321 replicative DNA helicase; Provisional
Probab=91.07 E-value=2.8 Score=44.28 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=52.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
|.=+++.|.||.|||.. .+-+..++.. ..+..+++++.- .-..|+...+-..... +....+..|....
T Consensus 226 G~LiiiaarPgmGKTaf-al~ia~~~a~--------~~g~~v~~fSLE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~~ 293 (472)
T PRK06321 226 SNLMILAARPAMGKTAL-ALNIAENFCF--------QNRLPVGIFSLE-MTVDQLIHRIICSRSE--VESKKISVGDLSG 293 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHhhcC--CCHHHhhcCCCCH
Confidence 34468899999999985 4444444321 124456666532 1122333222211111 1111111222222
Q ss_pred HHHH-------HHHcCCceeec-----CHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 252 RQVY-------RIQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 252 ~~~~-------~l~~~~~Iii~-----Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
.++. .+.+ ..+.|- |.+.+....++-.. -..+++||||=.+.|.
T Consensus 294 ~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 294 RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 2222 2222 345443 45555444433211 1347899999999875
No 417
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=2.2 Score=46.75 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ll 191 (533)
..+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3469999999999986543
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=90.94 E-value=3.3 Score=43.11 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.4
Q ss_pred cEEEEccCCCchhHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~ 193 (533)
-+++++++|+|||.+..-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 36789999999998755433
No 419
>PRK08506 replicative DNA helicase; Provisional
Probab=90.92 E-value=2.4 Score=44.92 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.|.||.|||..+ +-+..++.. .+..+++++.- .-..|+...+-....+.++.. +..|.-.
T Consensus 191 ~G~LivIaarpg~GKT~fa-l~ia~~~~~---------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~--i~~~~l~ 257 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLC-LNMALKALN---------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQN--LRTGDLD 257 (472)
T ss_pred CCceEEEEcCCCCChHHHH-HHHHHHHHh---------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--HhcCCCC
Confidence 4456788999999999854 444444332 24457777632 223333333322112222111 1112222
Q ss_pred HHHHH-------HHHcCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQVY-------RIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~-------~l~~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
..++. .+.. ..+.| .|+..+....++-......+++||||=.+.|.
T Consensus 258 ~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 258 DDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22222 2222 33443 24555544443311112357899999999775
No 420
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.85 E-value=0.3 Score=51.77 Aligned_cols=49 Identities=33% Similarity=0.404 Sum_probs=37.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.++++.||||||||..+.+|.+... ...++|.=|--+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~------------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY------------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc------------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 4699999999999999999976421 125888889999987666655544
No 421
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.79 E-value=1.1 Score=41.55 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|.-+.+.|++|+|||...+..+.... . .+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~-~---------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA-R---------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h---------CCCeEEEEECC
Confidence 456689999999999986544333322 1 24567777654
No 422
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=1.9 Score=43.28 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
+.+|..+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999984
No 423
>PHA00729 NTP-binding motif containing protein
Probab=90.73 E-value=2.3 Score=39.97 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999754
No 424
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.72 E-value=1.7 Score=43.31 Aligned_cols=58 Identities=5% Similarity=0.194 Sum_probs=35.1
Q ss_pred eeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEec
Q 009494 263 LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 263 Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SA 322 (533)
|-|-....+.+.+..... ....+++|||++|.|.... ...+.++++..+...+|++|.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCCCCeEEEEEC
Confidence 334444445555554443 3578999999999986543 455666666666444444443
No 425
>PRK09165 replicative DNA helicase; Provisional
Probab=90.65 E-value=2 Score=45.69 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=57.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcc-----cCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEE
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHH-----SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVV 245 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~-----~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~ 245 (533)
.|.-+++.|.||.|||..++--+........+.. .....+..++|++.- .-..|+...+-....+.+... +.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~--i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSK--IR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--Hh
Confidence 3445788999999999854433333222211100 001135667777643 223444443332222222211 12
Q ss_pred cCcchHHHHHHHH------cCCceee-----cCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh
Q 009494 246 GGDAMARQVYRIQ------QGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 246 gg~~~~~~~~~l~------~~~~Iii-----~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~ 298 (533)
.|.-...++.++. ....+.| .|++.+....++-.. -..+++||||=.+.|..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 2222222222222 1233443 245555444433211 13478999999997753
No 426
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.58 E-value=0.11 Score=47.02 Aligned_cols=44 Identities=9% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHcCCceeecCHHHHHHHHHcCCCC--CCCeeEEEEecchhhhhc
Q 009494 256 RIQQGVELIVGTPGRLIDLLMKHDIE--LDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 256 ~l~~~~~Iii~Tp~~l~~~l~~~~~~--l~~~~~vVvDEah~~~~~ 299 (533)
.....++|||+++..|++-..+..+. ..+-.+|||||||.+.+.
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 34456899999999987655443321 234578999999998653
No 427
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.52 E-value=0.42 Score=46.32 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 160 PVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 160 p~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
+-|.+.+..++. +..++++++||||||.. +..++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 445565655443 34588999999999984 34444443
No 428
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.50 E-value=3.8 Score=40.84 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCeeEEEEecchhhhhc-CcHHHHHHHHHh-------CCCCcEEEEeccCCHHHHHHHHhh
Q 009494 283 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRA-------ISLPQILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~-~~~~~~~~i~~~-------~~~~q~l~~SAT~~~~~~~l~~~~ 335 (533)
.++++||+|=+-++... .....+..+.+. .+...++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 45788999988775422 122344444332 134457888888755433333333
No 429
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=2.4 Score=44.34 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=28.4
Q ss_pred CeeEEEEecchhhhhcC-------cHHHHHHHHHhC----CCCcEEEEeccCCH
Q 009494 284 DIRMFVLDEVDCMLQRG-------FRDQVMQIFRAI----SLPQILMYSATISQ 326 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~-------~~~~~~~i~~~~----~~~q~l~~SAT~~~ 326 (533)
.-+.|.|||+|.+...- ....+.+++..+ ++.-+|.+.||--+
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 35679999999887432 123344555544 56789999999543
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.49 E-value=0.74 Score=46.93 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+.+++.||+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 688899999999999984
No 431
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.89 Score=46.61 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=33.0
Q ss_pred CCeeEEEEecchhhhhcC--------cHHHHHHHHHhC-----CCCcEEEEeccC-CHHHHHHHHhhCCCeE
Q 009494 283 DDIRMFVLDEVDCMLQRG--------FRDQVMQIFRAI-----SLPQILMYSATI-SQEVEKMSSSISKDIV 340 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~--------~~~~~~~i~~~~-----~~~q~l~~SAT~-~~~~~~l~~~~~~~~~ 340 (533)
....++++||+|.++..- .+-..+-+++.. ++.++++++||- |.++...+...+...+
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~ 315 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRL 315 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhcee
Confidence 346678899999887421 122222222222 566899999995 5555554444444333
No 432
>PF05729 NACHT: NACHT domain
Probab=90.38 E-value=2.6 Score=37.00 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=16.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHh
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
-++|.|++|+|||... .-++..+.
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHH
Confidence 3789999999999853 33333433
No 433
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.31 E-value=13 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHHH
Q 009494 175 LLVSANTGSGKTASFL 190 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~l 190 (533)
+++.+++|+|||....
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998643
No 434
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.23 E-value=3.9 Score=47.19 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=29.8
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCC-CcEEEEeccCC
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYSATIS 325 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~-~q~l~~SAT~~ 325 (533)
.--+||||++|.+.+......+..++.+.+. ..+|+.|-+.|
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3457999999998655556678888887754 45656676644
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.23 E-value=0.39 Score=34.97 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
|...++.+++|||||. ++-++..+
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHH
Confidence 4568999999999998 44444443
No 436
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.22 E-value=6.6 Score=35.21 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=62.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 254 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 254 (533)
+.|.--.|=|||.+++-.+++.+ +.+.+++++-=.+.- .-..+.+.+...-++.... .|.......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~----------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~--~g~~f~~~~ 71 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA----------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIER--FGKGFVWRM 71 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH----------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----G
T ss_pred EEEEeCCCCCchHHHHHHHHHHH----------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEE--cCCcccccC
Confidence 45566789999998887777654 667889988755441 0123333332211222211 111110000
Q ss_pred HHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc--HHHHHHHHHhCCCCcEEEEe-ccCCHHHHHH
Q 009494 255 YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYS-ATISQEVEKM 331 (533)
Q Consensus 255 ~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~--~~~~~~i~~~~~~~q~l~~S-AT~~~~~~~l 331 (533)
..-. .+ .......++... ..+.-..+++||+||+-...+.++ ...+..++..-+...-+.+| -..|+++...
T Consensus 72 ~~~~--~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 72 NEEE--ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp GGHH--HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred CCcH--HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 0000 00 111111222221 122346789999999998888774 45667777765554444444 4566666665
Q ss_pred HH
Q 009494 332 SS 333 (533)
Q Consensus 332 ~~ 333 (533)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 437
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.08 E-value=4.4 Score=44.88 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=31.7
Q ss_pred eeEEEEecchhhhhcCcHHHHHHHHHhCCCC-cEEEEeccCC
Q 009494 285 IRMFVLDEVDCMLQRGFRDQVMQIFRAISLP-QILMYSATIS 325 (533)
Q Consensus 285 ~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~-q~l~~SAT~~ 325 (533)
--++|+|+.|++.+......+..++++.++. ..++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3589999999999988888889999998654 5555565533
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.05 E-value=0.37 Score=51.00 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHH
Q 009494 159 TPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQ 196 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~llp~l~~ 196 (533)
.+-|.+.+..+.... -++++||||||||.. +..++..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~ 265 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSR 265 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhc
Confidence 455666666655432 368999999999985 3334444
No 439
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=90.04 E-value=6 Score=39.17 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC----CCCcEEEEeccCC
Q 009494 270 RLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI----SLPQILMYSATIS 325 (533)
Q Consensus 270 ~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~----~~~q~l~~SAT~~ 325 (533)
.|+..+..+.-.-+.--++|+||+|....+.....+..++... .+.-++++|..+.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 3444555544333333468999999877666555555555444 2334566665543
No 440
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=2 Score=45.96 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=36.9
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 129 AVPAPILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
.++.|-.+|++.|=-+.+...|+.. +..+|-.+..-.+ -.-+.+|+.+|+|+|||+.+
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 3455667899888666666666532 3333333333331 23467999999999999854
No 441
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.00 E-value=0.37 Score=45.51 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|..+++.|++|+|||...+--+...+.. .+.++++++-. +-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------~ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---------FGEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---------HT--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------cCCcEEEEEec-CCHHHHHHHHHHc
Confidence 45678999999999998655444444432 14458888743 4446666666655
No 442
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.00 E-value=1.3 Score=45.74 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
.+.+++.||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 35699999999999985
No 443
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.96 E-value=4.1 Score=40.64 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
-+.+|+.+|+|+|||+.
T Consensus 185 PKGVLLYGPPGTGKTLL 201 (406)
T COG1222 185 PKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCceEeeCCCCCcHHHH
Confidence 36799999999999984
No 444
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.92 E-value=1.3 Score=46.98 Aligned_cols=41 Identities=12% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
....+++||||+|.|....+ ..+...+...+...++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEEC
Confidence 35678999999998864432 333344444343444444444
No 445
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.92 E-value=2.8 Score=46.96 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=25.4
Q ss_pred eEEEEecchhhhhcCc----HHHHHHHHH-hCCCCcEEEEeccCCHHH
Q 009494 286 RMFVLDEVDCMLQRGF----RDQVMQIFR-AISLPQILMYSATISQEV 328 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~----~~~~~~i~~-~~~~~q~l~~SAT~~~~~ 328 (533)
.+++|||+|.+...+. ...+..++. .+....+.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4799999999865431 223333333 234556667777766554
No 446
>PRK09087 hypothetical protein; Validated
Probab=89.91 E-value=1.3 Score=41.86 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=22.7
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCH
Q 009494 287 MFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQ 326 (533)
Q Consensus 287 ~vVvDEah~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~ 326 (533)
+|++|++|.+. .....+..++..+ ...++|+.|.+.|.
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 79999999763 2245566666555 23445555555454
No 447
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.85 E-value=0.61 Score=46.36 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCCCHHHHHH-HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 156 DMPTPVQMQA-IPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 156 ~~p~p~Q~~~-i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
..+++.|..- +-++..+++++++++||||||.. +.+++..+ ....+++.+=-|.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I----------p~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI----------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC----------CchhcEEEEeccccc
Confidence 3456666654 44555889999999999999984 45544433 223447777777666
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.83 E-value=3.4 Score=43.49 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=51.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.+++|+|||...+. +...+.. .+.+++|+..- +-..|+...+.++.-. .....+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~---------~g~kvlYvs~E-Es~~qi~~ra~rlg~~--~~~l~~~~e--- 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAK---------NQMKVLYVSGE-ESLQQIKMRAIRLGLP--EPNLYVLSE--- 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHh---------cCCcEEEEECc-CCHHHHHHHHHHcCCC--hHHeEEcCC---
Confidence 456689999999999985443 3333321 23468888764 4446666655554311 111111110
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
.+.+.+...+.. .+.++||||.+..+.
T Consensus 157 ---------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 ---------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ---------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 233445444433 246789999998765
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.80 E-value=0.5 Score=43.69 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=15.5
Q ss_pred EEEEccCCCchhHHHHHHHHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQ 196 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~ 196 (533)
+++++|||||||.. +..++..
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHH
Confidence 68899999999985 3334444
No 450
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=89.79 E-value=0.61 Score=51.95 Aligned_cols=73 Identities=25% Similarity=0.252 Sum_probs=55.0
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.++..++|-|-+++...+.-..+++++|+|+|||-.+.- ++.-+.. +...++++|++.+..-.+|..+.+.+
T Consensus 734 ~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyh-------n~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 734 KNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYH-------NSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred cchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhh-------cCCCcceEEEEecccchhHHHHHHHh
Confidence 345567999999999999999999999999999986543 3333322 25678899999988777777665554
Q ss_pred H
Q 009494 233 L 233 (533)
Q Consensus 233 ~ 233 (533)
+
T Consensus 806 ~ 806 (1320)
T KOG1806|consen 806 L 806 (1320)
T ss_pred c
Confidence 3
No 451
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=89.77 E-value=0.39 Score=51.81 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.3
Q ss_pred hCCCcEEEEccCCCchhH
Q 009494 170 LSGKSLLVSANTGSGKTA 187 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~ 187 (533)
..|+.+.++||+|||||.
T Consensus 359 ~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 359 PPGERVAILGPSGSGKST 376 (529)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 378889999999999998
No 452
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.74 E-value=1.9 Score=41.58 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.+|+|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 5899999999999854
No 453
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.72 E-value=0.47 Score=51.42 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=39.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+++++.||||||||..+.+|-+..+ +..++|+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5789999999999999999987653 234888889999987766665554
No 454
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.70 E-value=2.4 Score=44.65 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=73.5
Q ss_pred cCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH---HHH
Q 009494 180 NTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYR 256 (533)
Q Consensus 180 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~ 256 (533)
-.+.||+..-++++.+.+.. +-.|.+||.+-+.+-|.|++.++..+ -++.+..++|..+..+. +.+
T Consensus 365 lvF~gse~~K~lA~rq~v~~--------g~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS--------GFKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred heeeecchhHHHHHHHHHhc--------cCCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhHHHHHHHH
Confidence 35788888877776665543 56788999999999999998887622 35788888888665433 334
Q ss_pred HHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 257 IQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 257 l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
.+.| ..++||| +++.++ +++..+.+||-++.-
T Consensus 434 FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 434 FRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 4443 8899999 777766 789999999997765
No 455
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.69 E-value=0.94 Score=45.62 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=39.5
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 147 LQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 147 ~~~l~~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++..+ ....+.+++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i----------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV----------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC----------CCCCcEEEECCccee
Confidence 444555555 4466667666555 567999999999999983 22222221 123456777777776
No 456
>PRK04328 hypothetical protein; Provisional
Probab=89.66 E-value=0.64 Score=44.67 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|..+++.+++|+|||...+--+...+. .+.++++++ +.+-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567899999999999855444444332 355577776 4445556666666654
No 457
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.60 E-value=1.5 Score=44.64 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=19.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.|+..+|.||.|+|||.. +..+...+
T Consensus 168 kGQR~lIvgppGvGKTTL-aK~Ian~I 193 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL-LQNIANSI 193 (416)
T ss_pred cCceEEEeCCCCCChhHH-HHHHHHHH
Confidence 678899999999999974 33344444
No 458
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.55 E-value=1.5 Score=48.29 Aligned_cols=42 Identities=12% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
...+++||||||.|.... ...+...+...+..-++.+.+|-+
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEcCCh
Confidence 577899999999886433 233334444433333444444433
No 459
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.17 E-value=2.3 Score=40.37 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.0
Q ss_pred CCC-cEEEEccCCCchhHHHH
Q 009494 171 SGK-SLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~-~~lv~a~TGsGKT~~~l 190 (533)
.++ -+.++++-|||||+..-
T Consensus 49 d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred cCCceEEEEecCCCchhHHHH
Confidence 444 67889999999998654
No 460
>PRK07413 hypothetical protein; Validated
Probab=89.05 E-value=3.8 Score=41.57 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=97.6
Q ss_pred CCHHHHHHHHH-h---cCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCc
Q 009494 109 LTIGQTDSLRK-R---LEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSG 184 (533)
Q Consensus 109 ~~~~~~~~~~~-~---~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsG 184 (533)
++.+++.++-+ + +++-++|...|..+....++- ..++. .++| ++...--.......+.|--..|-|
T Consensus 143 l~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlV------TEm~~--iKHp--~~~~~~~~~~~~g~i~VYTG~GKG 212 (382)
T PRK07413 143 LPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLH------SEMRP--HRRP--TASELGVPFNSSGGIEIYTGEGKG 212 (382)
T ss_pred ccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCee------EEece--ecCC--CcCCCCcccCCCCeEEEEeCCCCC
Confidence 45555544433 2 467889998887665555431 11111 1111 222111111233446777778999
Q ss_pred hhHHHHHHHHHHHhhhhhcccCCCCCc------eEEEEcccHHHHHH-HHHHHHHHcCCCCC-eEEEEEcCcc-hHHHHH
Q 009494 185 KTASFLVPVISQCANIRLHHSQNQKNP------LAMVLTPTRELCIQ-VEEQAKLLGKGLPF-KTALVVGGDA-MARQVY 255 (533)
Q Consensus 185 KT~~~llp~l~~l~~~~~~~~~~~~~~------~~Lil~Ptr~L~~Q-~~~~~~~~~~~~~~-~~~~~~gg~~-~~~~~~ 255 (533)
||.+++-.+++.+ +.+. +++|+-=.+.-... =...++.+....+- -....+|... ....
T Consensus 213 KTTAAlGlAlRA~----------G~G~~~~~~~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~v~~~~~g~~~~~~~~-- 280 (382)
T PRK07413 213 KSTSALGKALQAI----------GRGISQDKSHRVLILQWLKGGSGYTEDAAIAALRESYPHLVDHLRSGRDAIVWRG-- 280 (382)
T ss_pred chHHHHHHHHHHh----------cCCCCcccCceEEEEEECCCCCChHHHHHHHHhhhhCCCcEEEEEccCCCceeec--
Confidence 9999887777654 3343 78877633321000 00122222111111 1122222110 0000
Q ss_pred HHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcH--HHHHHHHHhCCCCcEEEEecc--CCHHHHHH
Q 009494 256 RIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFR--DQVMQIFRAISLPQILMYSAT--ISQEVEKM 331 (533)
Q Consensus 256 ~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~--~~~~~i~~~~~~~q~l~~SAT--~~~~~~~l 331 (533)
.....-.......+..... .+.-..+++||+||+-...+.++- ..+..+++..+...-+.+|+. .|+++..+
T Consensus 281 ---~~~~~~~~~a~~~~~~a~~-~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ 356 (382)
T PRK07413 281 ---QQQPIDYVEAERAWEIARA-AIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDL 356 (382)
T ss_pred ---CChHHHHHHHHHHHHHHHH-HHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHh
Confidence 0000000111222222222 122356789999999998888743 467777777777767777776 56767666
Q ss_pred HHh
Q 009494 332 SSS 334 (533)
Q Consensus 332 ~~~ 334 (533)
+..
T Consensus 357 ADl 359 (382)
T PRK07413 357 ASV 359 (382)
T ss_pred Cch
Confidence 543
No 461
>PF12846 AAA_10: AAA-like domain
Probab=88.94 E-value=0.67 Score=45.54 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=30.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
++++++.|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~---------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR---------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH---------cCCCEEEEcCCchHHH
Confidence 3578999999999998655 45544443 3566888877755544
No 462
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.92 E-value=1.2 Score=46.39 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=28.1
Q ss_pred CCCeeEEEEecchhhhhc--------C-cHHHHHHHHHhC------CCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQR--------G-FRDQVMQIFRAI------SLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~--------~-~~~~~~~i~~~~------~~~q~l~~SAT 323 (533)
-+.+..||+||+|.+... | -...+.+++.++ .+.-+|+||.-
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR 378 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR 378 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc
Confidence 467888999999987631 1 235566777766 45566777654
No 463
>PHA00012 I assembly protein
Probab=88.92 E-value=5.7 Score=39.29 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l 197 (533)
-++.|..|||||+.+..-++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999998766555544
No 464
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.81 E-value=0.85 Score=48.60 Aligned_cols=41 Identities=12% Similarity=0.333 Sum_probs=24.7
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..+.+++||||||.|.... ...+.+.+...+..-.+.+.+|
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEEC
Confidence 3578999999999986543 3344555555443333344444
No 465
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.77 E-value=7.6 Score=38.90 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=12.1
Q ss_pred EEEEccCCCchhHH
Q 009494 175 LLVSANTGSGKTAS 188 (533)
Q Consensus 175 ~lv~a~TGsGKT~~ 188 (533)
+-+.+++|+|||..
T Consensus 59 igi~G~~GaGKSTl 72 (332)
T PRK09435 59 IGITGVPGVGKSTF 72 (332)
T ss_pred EEEECCCCCCHHHH
Confidence 66799999999973
No 466
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.72 E-value=1.7 Score=49.10 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999743
No 467
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.62 E-value=1.1 Score=43.30 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=25.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
.|.-++|.|++|+|||...+-.+...+ ..+.++++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a----------~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA----------SRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----------hCCCcEEEEE
Confidence 456689999999999986544333322 1255688877
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.58 E-value=0.29 Score=42.90 Aligned_cols=117 Identities=19% Similarity=0.303 Sum_probs=56.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
..+++.+++|+|||.. ++-+...+... .-...=|++|- .+.=++..+++++.+..|....-
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~--------g~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK--------GYKVGGFITPE----------VREGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc--------CceeeeEEeee----------eecCCeEeeeEEEEccCCceEEE
Confidence 3589999999999985 44455554431 11223355552 22333444566665554322100
Q ss_pred HH---HHH-HcCCceeecCHHHH-HHHHHcCCCCCCCeeEEEEecchhhhh--cCcHHHHHHHHHh
Q 009494 253 QV---YRI-QQGVELIVGTPGRL-IDLLMKHDIELDDIRMFVLDEVDCMLQ--RGFRDQVMQIFRA 311 (533)
Q Consensus 253 ~~---~~l-~~~~~Iii~Tp~~l-~~~l~~~~~~l~~~~~vVvDEah~~~~--~~~~~~~~~i~~~ 311 (533)
.. ... ...+-|.+---+++ ...+++ .+..-+++|+||+--|-- ..|...+..++..
T Consensus 67 a~~~~~~~rvGkY~V~v~~le~i~~~al~r---A~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 ARVGFSRPRVGKYGVNVEGLEEIAIPALRR---ALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEcCCCCcccceEEeeHHHHHHHhHHHHHH---HhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 00 000 01122222222211 122222 123467899999987643 3466666666543
No 469
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.52 E-value=0.68 Score=45.04 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
..+.+++++|+||||||.. +-.++..+-. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~---------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP---------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT---------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc---------cccceEEeccccce
Confidence 4578899999999999984 3444443321 13567777777666
No 470
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=1 Score=48.81 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEec
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SA 322 (533)
+++-..+|+|||-.-+|-..+..+...+.++...+++++=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe
Confidence 56677899999999888877888888887765556666544
No 471
>PRK09354 recA recombinase A; Provisional
Probab=88.43 E-value=0.95 Score=45.47 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
.|+-+.+.+|+|||||..++..+.... ..+..++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~----------~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ----------KAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----------HcCCcEEEECCccchHH
Confidence 456788999999999986554443332 23567888887655543
No 472
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.23 E-value=5.1 Score=45.78 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
..+.++.||+|.|||....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3479999999999998643
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.13 E-value=4.5 Score=46.13 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ll 191 (533)
..+.++.||+|.|||..+..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 35899999999999986543
No 474
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.00 E-value=4.4 Score=42.59 Aligned_cols=40 Identities=10% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.+.++|||||+|.|.... ...+.+.++..+..-++.+.++
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEeC
Confidence 467899999999986433 2334444444333333333333
No 475
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.98 E-value=12 Score=40.12 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=54.5
Q ss_pred eEEEEcchhhHHHHHHHHHh---hc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-CCCCCccE
Q 009494 384 AVVYVGSRLGADLLSNAISV---TT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGRG-VELLGVRQ 453 (533)
Q Consensus 384 ~LVf~~s~~~a~~l~~~L~~---~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-----~~~~G-ldi~~v~~ 453 (533)
+||++++++-|..+++.+.. .. ++.+..++|+.+...+.. .++.| .+|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999888863 23 567889999998766554 44446 99999997 35555 88888888
Q ss_pred EEE
Q 009494 454 VII 456 (533)
Q Consensus 454 VI~ 456 (533)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 887
No 476
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.95 E-value=1.9 Score=47.06 Aligned_cols=41 Identities=15% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
....+++||||+|.|.... ...+...++..+..-++.+.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEeC
Confidence 4578899999999986533 3445555555444445555555
No 477
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.88 E-value=6.5 Score=45.01 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
..+.++.||+|.|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3589999999999998654
No 478
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.86 E-value=0.64 Score=45.07 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHH
Q 009494 164 QAIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 164 ~~i~~~~~~~~~lv~a~TGsGKT~~~l 190 (533)
+++..+..++++++.||+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344455688999999999999998643
No 479
>PRK05636 replicative DNA helicase; Provisional
Probab=87.72 E-value=3.8 Score=43.62 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHHH
Q 009494 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~l 190 (533)
.-+++.|.||.|||..++
T Consensus 266 ~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 266 QMIIVAARPGVGKSTLAL 283 (505)
T ss_pred ceEEEEeCCCCCHHHHHH
Confidence 446889999999997544
No 480
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.67 E-value=0.72 Score=47.44 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=29.6
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
-...+++++.|.||||||. ++-.++..+.. .+.+++|.=|.-+...
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~---------~g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRA---------RGDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH---------TT-EEEEEEETTHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHH---------cCCEEEEEECCchHHH
Confidence 3456789999999999997 45667776654 2445666666655544
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=87.60 E-value=1.1 Score=43.34 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=35.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.|+.++|.+++|||||+..+-.+... . ..+-++++++-. +...++.+.+..+.-
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~-~---------~~ge~vlyvs~~-e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG-A---------REGEPVLYVSTE-ESPEELLENARSFGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH-H---------hcCCcEEEEEec-CCHHHHHHHHHHcCC
Confidence 56789999999999998543333332 2 225567777654 666667777776543
No 482
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=1.8 Score=49.23 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=34.9
Q ss_pred cccCcccCCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAG---YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g---~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
....|++.|.-..++..|+.+- +..|.-+|... +.--+.++..+|+|+|||+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHHH
Confidence 3457888888888888887752 22222222211 123466999999999999853
No 483
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=87.53 E-value=0.42 Score=29.46 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=16.2
Q ss_pred ccCCCCCeeeeeccccccc
Q 009494 31 EALPEEPKCVICGRYGEYI 49 (533)
Q Consensus 31 ~~~~~~~~c~~c~~~~~~~ 49 (533)
.+.|..-+|.+|+.-||||
T Consensus 3 k~pP~~Y~C~~C~~~GH~i 21 (32)
T PF13696_consen 3 KKPPPGYVCHRCGQKGHWI 21 (32)
T ss_pred CCCCCCCEeecCCCCCccH
Confidence 4556678999999999999
No 484
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=87.50 E-value=0.23 Score=26.41 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=11.4
Q ss_pred Ceeeeeccccccc
Q 009494 37 PKCVICGRYGEYI 49 (533)
Q Consensus 37 ~~c~~c~~~~~~~ 49 (533)
+.|..||..||+.
T Consensus 1 ~~C~~C~~~GH~~ 13 (18)
T PF00098_consen 1 RKCFNCGEPGHIA 13 (18)
T ss_dssp SBCTTTSCSSSCG
T ss_pred CcCcCCCCcCccc
Confidence 4799999999976
No 485
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.48 E-value=1.6 Score=41.38 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.7
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCC
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLP 315 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~ 315 (533)
+-+++|+||.=..+|..-...+..++..+...
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 46789999999999988888888888888443
No 486
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=1.8 Score=43.15 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=31.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHH----HHhCCCcEEEEccCCCchhHHH
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIP----SALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
.+|.+.+=-+.+.+.|...= ..|.|.--+- .+..-+.+++.+|+|+|||..+
T Consensus 89 v~f~DIggLe~v~~~L~e~V---ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELV---ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHH---hhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 46777776667777776541 1122222221 1123467999999999999854
No 487
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=87.43 E-value=2.8 Score=39.35 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|+-+.+.|++|+|||..++..+...+.... ..+....++++..-.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~----~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGE----LGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccc----cCCCcceEEEEecCC
Confidence 4566899999999999865443333221100 011235677777543
No 488
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.38 E-value=1.2 Score=45.89 Aligned_cols=80 Identities=19% Similarity=0.083 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 145 KLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
.+++.+++. +-.+-..|.++.-..-.|.. .|.+=.|||||...++-+. ++. .++...+++|.+-|+.|+.
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh-------~knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELH-------SKNPDSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHh-------cCCCCceEEEEeehHHHHH
Confidence 344444432 22334567776555555555 6788899999985433322 222 1255678999999999999
Q ss_pred HHHHHHHHHc
Q 009494 225 QVEEQAKLLG 234 (533)
Q Consensus 225 Q~~~~~~~~~ 234 (533)
++.....+|+
T Consensus 221 ~~r~lv~~F~ 230 (660)
T COG3972 221 TMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHH
Confidence 9888776664
No 489
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.35 E-value=9.4 Score=34.39 Aligned_cols=139 Identities=9% Similarity=0.067 Sum_probs=70.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH-HHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE-EQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~-~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
+.|.-..|-|||.+++--+++.+ +.|.+++|+-=.+.-...=. ..++.+ . ++.... .|......
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa----------G~G~rV~iiQFlKg~~~~GE~~~l~~~-~--~v~~~~--~g~~~~~~ 88 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA----------GQGTPVLIVQFLKGGIQQGPDRPIQLG-Q--NLDWVR--CDLPRCLD 88 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh----------cCCCEEEEEEEecCCCcchHHHHHHhC-C--CcEEEE--CCCCCeee
Confidence 55667789999999887777654 66888888864332211101 112222 1 222221 11110000
Q ss_pred HHHHHcCCc-eeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc--HHHHHHHHHhCCCCcEEEEe-ccCCHHHH
Q 009494 254 VYRIQQGVE-LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYS-ATISQEVE 329 (533)
Q Consensus 254 ~~~l~~~~~-Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~--~~~~~~i~~~~~~~q~l~~S-AT~~~~~~ 329 (533)
. ...+ .-.......++.... .+.-..+++||+||+-...+.++ ...+..+++..+...-+.+| -..|+++.
T Consensus 89 ~----~~~~~~~~~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Li 163 (178)
T PRK07414 89 T----PHLDESEKKALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLL 163 (178)
T ss_pred C----CCcCHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHH
Confidence 0 0000 000111122222211 12235689999999998888774 45666677766655445444 45666666
Q ss_pred HHHH
Q 009494 330 KMSS 333 (533)
Q Consensus 330 ~l~~ 333 (533)
.++.
T Consensus 164 e~AD 167 (178)
T PRK07414 164 AIAD 167 (178)
T ss_pred HhCC
Confidence 5543
No 490
>CHL00176 ftsH cell division protein; Validated
Probab=87.28 E-value=2.8 Score=46.02 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999843
No 491
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.28 E-value=6.7 Score=40.78 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCeEEEEcchhhHHHHH---HHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc------ccccCCCCCc
Q 009494 381 TPPAVVYVGSRLGADLLS---NAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI------LGRGVELLGV 451 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~---~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~------~~~Gldi~~v 451 (533)
++=.||.|++++.|..+. +.|.+..|+.++++||+.+..++..-++ -...++|||+- --.++|+.++
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 334577889998777664 4554567899999999999888776665 34579999972 2357888888
Q ss_pred cEEEE
Q 009494 452 RQVII 456 (533)
Q Consensus 452 ~~VI~ 456 (533)
.++++
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 88776
No 492
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.22 E-value=3.9 Score=44.18 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=67.9
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHH----HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-c
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGAD----LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L 442 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~----~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~ 442 (533)
-.++.++.. ...+.++..-++|.--|+ .+.++|. ..|+.+..+.|.+....|.++++...+|+++++|.|-+ +
T Consensus 299 VA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 299 VALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 334444433 344678899999965554 4555555 56899999999999999999999999999999999985 4
Q ss_pred cccCCCCCccEEEE
Q 009494 443 GRGVELLGVRQVII 456 (533)
Q Consensus 443 ~~Gldi~~v~~VI~ 456 (533)
-..+++.++.+||.
T Consensus 377 Qd~V~F~~LgLVIi 390 (677)
T COG1200 377 QDKVEFHNLGLVII 390 (677)
T ss_pred hcceeecceeEEEE
Confidence 67888888888886
No 493
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.16 E-value=0.7 Score=50.74 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+++++.||||||||..+.+|-+..+ ...++|+=|.-|+........++
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 35799999999999999999976542 12477778888886654444433
No 494
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.13 E-value=7.6 Score=44.33 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=20.8
Q ss_pred HHHHHHHHh----C--CCcEEEEccCCCchhHHHH
Q 009494 162 QMQAIPSAL----S--GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 162 Q~~~i~~~~----~--~~~~lv~a~TGsGKT~~~l 190 (533)
|..-+..+. . ..+.++.||+|+|||...-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 555555544 2 3589999999999998643
No 495
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.06 E-value=3.8 Score=47.01 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=67.5
Q ss_pred ccCCCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCCCCCcc
Q 009494 377 KQHFTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVR 452 (533)
Q Consensus 377 ~~~~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~ 452 (533)
....++++.|.|+|.--|+.-++-++.+ .++++..+..-.+.++...+++...+|+++|+|.|- .+..++-+.++.
T Consensus 639 AV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLG 718 (1139)
T COG1197 639 AVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLG 718 (1139)
T ss_pred HhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCC
Confidence 3345678999999998888877777643 355677788888999999999999999999999995 788899999999
Q ss_pred EEEE
Q 009494 453 QVII 456 (533)
Q Consensus 453 ~VI~ 456 (533)
.+|+
T Consensus 719 LlII 722 (1139)
T COG1197 719 LLII 722 (1139)
T ss_pred eEEE
Confidence 9887
No 496
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.62 E-value=1.1 Score=44.61 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.2
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009494 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~ 188 (533)
+..+++++++|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 33678999999999999984
No 497
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.57 E-value=1.6 Score=47.78 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=36.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH--HHHHHHHHHHHHcC
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE--LCIQVEEQAKLLGK 235 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~--L~~Q~~~~~~~~~~ 235 (533)
.++++|.|+||+|||..+. .++.+.+. .+..++++=|-.. |...+...+++.+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~-~l~~q~i~---------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAE-LLITQDIR---------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHHH---------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 4679999999999998654 44444443 2445777777754 66667777776643
No 498
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=86.45 E-value=2.3 Score=46.24 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=39.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH--HHHHHHHHHHHHHcCC
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR--ELCIQVEEQAKLLGKG 236 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr--~L~~Q~~~~~~~~~~~ 236 (533)
..+.+|.|+||+|||..+.+.+.+.+. .+..++++=|.. ++...++..+++.+..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~----------~g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIR----------RGDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 467999999999999976654444432 245677777876 5667777777777653
No 499
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.38 E-value=2.1 Score=39.08 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhh-hhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCAN-IRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~-~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.|.-+++.|++|+|||... +.+..++.. ..........+.++|++..-.. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~-~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLA-LQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHH-HHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4566899999999999854 444444332 1111101124567888776544 4566677766654
No 500
>PRK09183 transposase/IS protein; Provisional
Probab=86.35 E-value=1.7 Score=41.99 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.2
Q ss_pred HhCCCcEEEEccCCCchhHHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~l 190 (533)
+..+.++++.||+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4468899999999999997543
Done!