Query 009494
Match_columns 533
No_of_seqs 375 out of 3020
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.3E-66 4.3E-71 543.2 49.4 385 119-509 40-428 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.1E-61 2.8E-65 497.4 47.6 391 122-514 2-408 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1E-57 3.5E-62 473.2 40.7 365 130-504 32-398 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.6E-56 5.4E-61 464.6 37.0 372 127-508 32-406 (414)
5 1s2m_A Putative ATP-dependent 100.0 2.5E-55 8.7E-60 453.6 43.1 362 132-504 18-380 (400)
6 1hv8_A Putative ATP-dependent 100.0 6E-54 2E-58 437.5 45.2 354 134-504 5-360 (367)
7 1xti_A Probable ATP-dependent 100.0 2.8E-54 9.5E-59 444.3 42.7 357 135-501 8-370 (391)
8 3pey_A ATP-dependent RNA helic 100.0 1.9E-53 6.5E-58 438.2 41.9 356 133-502 3-370 (395)
9 3sqw_A ATP-dependent RNA helic 100.0 5.9E-54 2E-58 463.8 38.7 357 142-501 28-410 (579)
10 3fht_A ATP-dependent RNA helic 100.0 1.6E-53 5.5E-58 441.6 40.2 362 130-504 20-395 (412)
11 1fuu_A Yeast initiation factor 100.0 2E-55 7E-60 453.1 24.7 366 130-506 16-383 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 1.3E-53 4.4E-58 460.5 38.1 358 142-502 79-462 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 2E-54 7E-59 457.5 21.9 368 123-503 77-461 (479)
14 2z0m_A 337AA long hypothetical 100.0 1.8E-51 6.3E-56 414.3 40.1 335 142-503 1-336 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.4E-50 4.9E-55 434.5 38.2 361 138-521 24-420 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1E-51 3.5E-56 438.8 21.8 381 110-504 93-486 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 9.1E-50 3.1E-54 424.0 35.7 341 134-499 1-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 4.9E-49 1.7E-53 408.6 29.1 325 145-502 9-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 2.6E-46 8.9E-51 414.0 33.3 334 134-490 7-409 (715)
20 1tf5_A Preprotein translocase 100.0 1.7E-46 5.8E-51 403.3 28.7 356 106-491 36-547 (844)
21 4a2p_A RIG-I, retinoic acid in 100.0 3.6E-46 1.2E-50 401.6 30.5 331 154-491 4-510 (556)
22 2zj8_A DNA helicase, putative 100.0 1.8E-46 6.3E-51 415.1 25.2 333 136-491 2-389 (720)
23 3tbk_A RIG-I helicase domain; 100.0 9.2E-46 3.2E-50 398.1 27.1 332 157-495 4-513 (555)
24 2p6r_A Afuhel308 helicase; pro 100.0 1E-46 3.4E-51 416.1 19.9 332 136-491 2-390 (702)
25 2ykg_A Probable ATP-dependent 100.0 4.1E-46 1.4E-50 411.9 22.9 340 147-494 3-521 (696)
26 3l9o_A ATP-dependent RNA helic 100.0 3E-45 1E-49 416.9 29.1 328 136-489 163-597 (1108)
27 4a2q_A RIG-I, retinoic acid in 100.0 7.6E-45 2.6E-49 406.1 30.4 333 152-491 243-751 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 2.7E-44 9.3E-49 408.9 30.3 318 152-502 74-503 (1104)
29 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-43 3.7E-48 401.0 30.1 333 152-491 243-751 (936)
30 4f92_B U5 small nuclear ribonu 100.0 1.3E-43 4.3E-48 416.7 31.3 343 142-498 911-1317(1724)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-44 3.8E-49 412.3 21.7 323 148-503 48-468 (1054)
32 1wp9_A ATP-dependent RNA helic 100.0 1.4E-42 4.8E-47 366.4 35.9 322 157-491 9-477 (494)
33 2xgj_A ATP-dependent RNA helic 100.0 5.3E-43 1.8E-47 395.2 34.7 318 152-497 82-508 (1010)
34 2fsf_A Preprotein translocase 100.0 4E-44 1.4E-48 383.8 23.8 321 153-491 71-585 (853)
35 1nkt_A Preprotein translocase 100.0 1.4E-42 4.7E-47 372.2 31.7 337 152-506 107-638 (922)
36 4gl2_A Interferon-induced heli 100.0 4E-44 1.4E-48 396.2 15.0 324 157-489 7-519 (699)
37 4f92_B U5 small nuclear ribonu 100.0 3.3E-42 1.1E-46 404.7 29.5 339 154-498 76-482 (1724)
38 1gm5_A RECG; helicase, replica 100.0 1.7E-42 5.9E-47 379.5 22.7 334 145-504 357-711 (780)
39 4a4z_A Antiviral helicase SKI2 100.0 2.6E-41 8.9E-46 381.4 31.3 306 154-487 37-490 (997)
40 3fe2_A Probable ATP-dependent 100.0 2.7E-40 9.3E-45 317.2 27.2 238 108-347 2-240 (242)
41 2eyq_A TRCF, transcription-rep 100.0 2.7E-39 9.3E-44 370.1 38.3 323 140-489 586-922 (1151)
42 2oca_A DAR protein, ATP-depend 100.0 8.5E-41 2.9E-45 356.0 17.5 311 156-487 112-453 (510)
43 2whx_A Serine protease/ntpase/ 100.0 6.4E-41 2.2E-45 360.7 15.3 318 140-506 155-498 (618)
44 2jlq_A Serine protease subunit 100.0 1.8E-40 6.1E-45 346.8 16.6 286 154-488 1-310 (451)
45 2fwr_A DNA repair protein RAD2 100.0 2E-39 6.7E-44 342.1 20.1 292 157-489 93-454 (472)
46 2xau_A PRE-mRNA-splicing facto 100.0 6.7E-39 2.3E-43 353.4 24.2 339 131-491 68-445 (773)
47 1yks_A Genome polyprotein [con 100.0 2E-40 6.9E-45 344.9 6.9 283 168-507 4-320 (440)
48 1wrb_A DJVLGB; RNA helicase, D 100.0 1.8E-37 6E-42 299.7 22.5 237 120-356 6-251 (253)
49 2wv9_A Flavivirin protease NS2 100.0 8.3E-39 2.8E-43 346.4 14.3 304 150-501 203-548 (673)
50 3o8b_A HCV NS3 protease/helica 100.0 5.3E-39 1.8E-43 342.8 10.5 277 158-493 218-518 (666)
51 2z83_A Helicase/nucleoside tri 100.0 1.9E-38 6.4E-43 332.1 12.2 273 166-489 15-313 (459)
52 3iuy_A Probable ATP-dependent 100.0 2.7E-36 9.3E-41 286.7 24.3 215 127-343 11-227 (228)
53 3dkp_A Probable ATP-dependent 100.0 1.8E-36 6.2E-41 291.2 22.2 229 113-347 3-243 (245)
54 3h1t_A Type I site-specific re 100.0 1.8E-37 6.3E-42 335.9 17.0 315 157-487 178-556 (590)
55 3ber_A Probable ATP-dependent 100.0 1.1E-35 3.8E-40 286.1 24.6 207 132-345 40-248 (249)
56 2v6i_A RNA helicase; membrane, 100.0 3.8E-36 1.3E-40 312.0 22.1 269 171-487 1-289 (431)
57 3bor_A Human initiation factor 100.0 1E-35 3.6E-40 284.3 23.0 213 126-345 21-235 (237)
58 2pl3_A Probable ATP-dependent 100.0 6.9E-35 2.4E-39 278.5 26.9 228 110-346 5-234 (236)
59 2oxc_A Probable ATP-dependent 100.0 3E-35 1E-39 279.9 24.1 211 126-344 15-228 (230)
60 1z63_A Helicase of the SNF2/RA 100.0 4E-35 1.4E-39 311.4 26.2 326 156-504 36-466 (500)
61 1vec_A ATP-dependent RNA helic 100.0 9E-35 3.1E-39 271.6 25.3 201 135-342 3-205 (206)
62 3fmo_B ATP-dependent RNA helic 100.0 3.4E-35 1.2E-39 290.2 22.9 215 122-346 76-299 (300)
63 1q0u_A Bstdead; DEAD protein, 100.0 2.5E-35 8.6E-40 278.2 20.2 208 133-347 2-214 (219)
64 3dmq_A RNA polymerase-associat 100.0 8.1E-36 2.8E-40 337.2 18.9 333 156-503 152-627 (968)
65 1qde_A EIF4A, translation init 100.0 1.2E-34 4.2E-39 274.4 24.1 212 128-347 7-219 (224)
66 3jux_A Protein translocase sub 100.0 1.1E-33 3.6E-38 297.2 32.7 318 153-491 72-589 (822)
67 3rc3_A ATP-dependent RNA helic 100.0 2.7E-35 9.3E-40 317.9 21.1 288 160-496 143-451 (677)
68 2gxq_A Heat resistant RNA depe 100.0 5.4E-34 1.8E-38 266.5 26.1 203 136-344 2-205 (207)
69 1t6n_A Probable ATP-dependent 100.0 6.4E-34 2.2E-38 268.8 24.2 210 127-343 6-219 (220)
70 3ly5_A ATP-dependent RNA helic 100.0 5E-34 1.7E-38 276.7 23.6 202 135-339 52-257 (262)
71 3mwy_W Chromo domain-containin 100.0 1.8E-32 6.1E-37 305.5 30.1 383 86-489 167-684 (800)
72 1z3i_X Similar to RAD54-like; 100.0 3.4E-31 1.2E-35 288.1 33.1 322 157-489 55-528 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 8.7E-32 3E-36 302.2 25.2 312 157-488 271-708 (1038)
74 2ipc_A Preprotein translocase 100.0 3.5E-29 1.2E-33 267.6 32.9 320 152-490 75-699 (997)
75 1c4o_A DNA nucleotide excision 100.0 1.6E-27 5.5E-32 259.0 30.2 178 314-501 380-562 (664)
76 2p6n_A ATP-dependent RNA helic 100.0 5E-28 1.7E-32 222.4 19.8 176 333-512 9-185 (191)
77 2d7d_A Uvrabc system protein B 100.0 1.9E-26 6.4E-31 250.6 30.7 176 314-499 386-566 (661)
78 2yqp_A Probable ATP-dependent 100.0 1.3E-29 4.4E-34 169.9 3.3 54 19-72 2-55 (60)
79 2jgn_A DBX, DDX3, ATP-dependen 100.0 4.3E-27 1.5E-31 215.2 19.0 165 348-514 14-178 (185)
80 2hjv_A ATP-dependent RNA helic 99.9 3.4E-26 1.2E-30 205.1 20.5 151 349-502 5-155 (163)
81 1fuk_A Eukaryotic initiation f 99.9 3.3E-26 1.1E-30 205.6 15.5 151 353-506 3-154 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 204.3 18.6 152 350-504 4-162 (175)
83 1t5i_A C_terminal domain of A 99.9 1E-25 3.4E-30 203.7 17.1 150 351-503 3-153 (172)
84 3eaq_A Heat resistant RNA depe 99.9 1.2E-24 4.2E-29 203.4 19.0 147 354-503 6-152 (212)
85 3i32_A Heat resistant RNA depe 99.9 3.4E-24 1.2E-28 210.0 17.9 147 354-503 3-149 (300)
86 3b6e_A Interferon-induced heli 99.9 2.3E-24 7.9E-29 202.2 11.5 165 154-323 30-216 (216)
87 2yjt_D ATP-dependent RNA helic 99.8 1.4E-25 4.9E-30 202.5 0.0 149 353-504 3-152 (170)
88 2vl7_A XPD; helicase, unknown 99.9 2.4E-22 8.1E-27 214.1 19.3 302 153-489 4-521 (540)
89 3llm_A ATP-dependent RNA helic 99.9 3E-22 1E-26 190.6 15.4 179 147-340 51-232 (235)
90 1rif_A DAR protein, DNA helica 99.9 4.8E-23 1.7E-27 201.7 7.3 154 157-329 113-267 (282)
91 3crv_A XPD/RAD3 related DNA he 99.9 1.7E-20 5.8E-25 200.5 26.2 308 157-489 3-531 (551)
92 2fz4_A DNA repair protein RAD2 99.8 2.8E-19 9.5E-24 169.9 15.5 139 156-327 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.3E-19 1.5E-23 171.7 12.0 128 362-489 93-224 (271)
94 4a15_A XPD helicase, ATP-depen 99.8 7.6E-18 2.6E-22 181.4 21.3 316 157-489 3-584 (620)
95 1w36_D RECD, exodeoxyribonucle 98.8 6E-09 2.1E-13 112.0 9.3 144 159-323 151-298 (608)
96 3upu_A ATP-dependent DNA helic 98.2 9.9E-06 3.4E-10 84.1 12.2 71 150-229 18-93 (459)
97 2gk6_A Regulator of nonsense t 98.1 1.3E-05 4.4E-10 86.5 11.8 70 155-233 178-247 (624)
98 4b3f_X DNA-binding protein smu 98.0 7.1E-06 2.4E-10 89.0 7.9 67 157-233 189-256 (646)
99 2xzl_A ATP-dependent helicase 98.0 2E-05 6.8E-10 87.0 11.3 70 155-233 358-427 (802)
100 3e1s_A Exodeoxyribonuclease V, 98.0 2.2E-05 7.6E-10 83.4 11.1 120 157-321 189-313 (574)
101 2wjy_A Regulator of nonsense t 98.0 2.6E-05 9E-10 86.0 11.4 70 155-233 354-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.0 1.6E-05 5.4E-10 77.1 8.4 124 361-490 105-238 (328)
103 3lfu_A DNA helicase II; SF1 he 97.8 0.00066 2.3E-08 73.5 19.6 71 156-234 8-78 (647)
104 2o0j_A Terminase, DNA packagin 97.6 0.00058 2E-08 68.4 13.3 71 157-235 163-233 (385)
105 3cpe_A Terminase, DNA packagin 97.2 0.0024 8.3E-08 68.2 12.8 120 157-298 163-287 (592)
106 3vkw_A Replicase large subunit 97.1 0.0023 7.7E-08 64.9 10.5 107 174-323 163-269 (446)
107 3ec2_A DNA replication protein 97.0 0.0029 1E-07 56.1 9.8 30 159-188 16-54 (180)
108 2orw_A Thymidine kinase; TMTK, 96.6 0.0043 1.5E-07 55.5 7.2 40 171-220 2-41 (184)
109 2kjq_A DNAA-related protein; s 96.6 0.0022 7.5E-08 55.2 5.0 18 171-188 35-52 (149)
110 1xx6_A Thymidine kinase; NESG, 96.3 0.0087 3E-07 53.7 7.3 39 172-220 8-46 (191)
111 2b8t_A Thymidine kinase; deoxy 96.2 0.0051 1.8E-07 56.6 5.7 92 171-297 11-102 (223)
112 2j9r_A Thymidine kinase; TK1, 96.1 0.01 3.5E-07 53.9 6.8 40 172-221 28-67 (214)
113 3te6_A Regulatory protein SIR3 95.8 0.11 3.7E-06 50.4 13.3 26 171-197 44-69 (318)
114 1uaa_A REP helicase, protein ( 95.8 0.016 5.3E-07 63.0 7.9 71 157-235 2-72 (673)
115 2orv_A Thymidine kinase; TP4A 95.8 0.03 1E-06 51.4 8.6 40 171-220 18-57 (234)
116 1pjr_A PCRA; DNA repair, DNA r 95.7 0.024 8.3E-07 62.0 9.3 70 156-233 10-79 (724)
117 1a5t_A Delta prime, HOLB; zinc 95.7 0.054 1.9E-06 53.2 10.9 33 158-190 3-42 (334)
118 1l8q_A Chromosomal replication 95.7 0.076 2.6E-06 51.7 11.7 17 172-188 37-53 (324)
119 2zpa_A Uncharacterized protein 95.6 0.038 1.3E-06 58.9 9.7 112 157-324 175-288 (671)
120 3e2i_A Thymidine kinase; Zn-bi 95.3 0.017 5.9E-07 52.4 5.0 41 171-221 27-67 (219)
121 2qby_B CDC6 homolog 3, cell di 95.2 0.067 2.3E-06 53.3 9.8 38 287-324 136-174 (384)
122 3u4q_A ATP-dependent helicase/ 95.2 0.034 1.2E-06 64.6 8.3 71 157-233 10-80 (1232)
123 2v1u_A Cell division control p 95.2 0.058 2E-06 53.7 9.2 29 284-312 130-159 (387)
124 2w58_A DNAI, primosome compone 95.2 0.16 5.4E-06 45.5 11.2 17 173-189 55-71 (202)
125 2chg_A Replication factor C sm 95.1 0.24 8.1E-06 44.5 12.5 40 283-323 101-140 (226)
126 2z4s_A Chromosomal replication 95.1 0.14 4.9E-06 52.2 11.9 42 284-325 194-238 (440)
127 1d2n_A N-ethylmaleimide-sensit 95.0 0.23 7.9E-06 46.9 12.3 17 173-189 65-81 (272)
128 3kl4_A SRP54, signal recogniti 94.7 0.091 3.1E-06 53.3 9.1 53 283-335 178-234 (433)
129 1fnn_A CDC6P, cell division co 94.7 0.098 3.4E-06 52.1 9.3 15 174-188 46-60 (389)
130 1gm5_A RECG; helicase, replica 94.1 0.14 4.8E-06 56.1 9.6 77 380-456 416-496 (780)
131 3h4m_A Proteasome-activating n 94.1 0.25 8.6E-06 46.8 10.4 54 133-189 12-68 (285)
132 1jbk_A CLPB protein; beta barr 94.0 0.36 1.2E-05 42.2 10.6 18 172-189 43-60 (195)
133 1w4r_A Thymidine kinase; type 94.0 0.087 3E-06 47.0 6.3 39 171-219 19-57 (195)
134 2q6t_A DNAB replication FORK h 94.0 0.25 8.6E-06 50.4 10.7 39 171-218 199-237 (444)
135 2qby_A CDC6 homolog 1, cell di 93.7 0.33 1.1E-05 48.0 10.9 17 172-188 45-61 (386)
136 3syl_A Protein CBBX; photosynt 93.7 0.14 4.6E-06 49.4 7.7 18 172-189 67-84 (309)
137 2r6a_A DNAB helicase, replicat 93.7 0.26 9E-06 50.5 10.1 39 171-218 202-240 (454)
138 2dr3_A UPF0273 protein PH0284; 93.6 0.48 1.6E-05 43.6 11.1 50 171-231 22-71 (247)
139 1njg_A DNA polymerase III subu 93.6 1.6 5.6E-05 39.3 14.8 15 174-188 47-61 (250)
140 2p65_A Hypothetical protein PF 93.6 0.036 1.2E-06 48.7 3.1 18 172-189 43-60 (187)
141 3eie_A Vacuolar protein sortin 93.6 0.74 2.5E-05 44.6 12.8 51 133-189 13-68 (322)
142 3u61_B DNA polymerase accessor 93.5 0.097 3.3E-06 50.9 6.3 40 283-322 104-144 (324)
143 3pfi_A Holliday junction ATP-d 93.5 0.22 7.6E-06 48.6 8.9 17 173-189 56-72 (338)
144 1iqp_A RFCS; clamp loader, ext 93.5 0.33 1.1E-05 46.8 10.1 41 283-324 109-149 (327)
145 3bos_A Putative DNA replicatio 93.4 0.056 1.9E-06 49.7 4.2 19 171-189 51-69 (242)
146 1sxj_E Activator 1 40 kDa subu 93.1 0.24 8.3E-06 48.6 8.6 41 282-323 132-172 (354)
147 1g5t_A COB(I)alamin adenosyltr 93.0 1.1 3.8E-05 39.8 11.8 136 172-333 28-172 (196)
148 2gno_A DNA polymerase III, gam 92.7 0.48 1.6E-05 45.7 9.7 42 283-325 81-122 (305)
149 1sxj_D Activator 1 41 kDa subu 92.1 0.7 2.4E-05 45.1 10.5 40 283-323 132-171 (353)
150 3dm5_A SRP54, signal recogniti 92.1 1 3.5E-05 45.6 11.7 56 174-242 102-159 (443)
151 1cr0_A DNA primase/helicase; R 92.1 0.2 6.7E-06 48.1 6.2 20 170-189 33-52 (296)
152 1jr3_A DNA polymerase III subu 92.1 1.7 6E-05 42.6 13.4 41 282-323 117-157 (373)
153 2w0m_A SSO2452; RECA, SSPF, un 91.8 0.69 2.4E-05 42.0 9.3 19 171-189 22-40 (235)
154 1sxj_B Activator 1 37 kDa subu 91.8 0.62 2.1E-05 44.8 9.4 37 284-321 107-144 (323)
155 4b4t_H 26S protease regulatory 91.6 0.29 1E-05 49.7 6.8 54 132-188 203-259 (467)
156 1sxj_A Activator 1 95 kDa subu 91.4 0.39 1.3E-05 50.1 7.9 41 283-324 147-189 (516)
157 4a1f_A DNAB helicase, replicat 91.3 0.18 6.3E-06 49.3 5.0 38 171-218 45-82 (338)
158 3pvs_A Replication-associated 91.3 0.13 4.4E-06 52.7 4.0 17 173-189 51-67 (447)
159 3oiy_A Reverse gyrase helicase 91.3 0.63 2.1E-05 46.7 9.2 79 379-457 62-146 (414)
160 1nlf_A Regulatory protein REPA 91.2 1.6 5.3E-05 41.2 11.4 23 169-191 27-49 (279)
161 3bh0_A DNAB-like replicative h 90.5 0.63 2.2E-05 45.0 8.0 38 171-218 67-104 (315)
162 1w5s_A Origin recognition comp 90.2 0.8 2.7E-05 45.8 8.8 16 173-188 51-68 (412)
163 1hqc_A RUVB; extended AAA-ATPa 90.0 1.1 3.7E-05 43.2 9.2 18 172-189 38-55 (324)
164 2fna_A Conserved hypothetical 89.8 4.2 0.00014 39.3 13.5 52 267-321 123-177 (357)
165 2chq_A Replication factor C sm 89.8 0.57 1.9E-05 45.0 7.0 16 174-189 40-55 (319)
166 1sxj_C Activator 1 40 kDa subu 89.7 1.9 6.6E-05 41.9 10.9 41 283-324 109-149 (340)
167 2eyq_A TRCF, transcription-rep 89.7 1.1 3.6E-05 51.6 10.1 77 380-456 651-731 (1151)
168 2p6n_A ATP-dependent RNA helic 89.7 2.7 9.4E-05 37.1 10.9 73 210-292 54-130 (191)
169 2eyu_A Twitching motility prot 89.2 0.29 1E-05 46.0 4.2 20 169-188 22-41 (261)
170 1u6p_A GAG polyprotein; MLV, A 89.0 0.32 1.1E-05 33.5 3.2 20 30-49 17-36 (56)
171 1a6b_B Momulv, zinc finger pro 88.6 0.17 5.7E-06 32.3 1.4 20 30-49 4-23 (40)
172 3co5_A Putative two-component 88.6 0.35 1.2E-05 40.7 3.9 20 169-188 24-43 (143)
173 3bgw_A DNAB-like replicative h 88.4 0.72 2.5E-05 47.0 6.8 38 171-218 196-233 (444)
174 3n70_A Transport activator; si 88.3 0.37 1.3E-05 40.6 3.9 20 170-189 22-41 (145)
175 2qen_A Walker-type ATPase; unk 88.2 2.9 0.0001 40.3 11.0 18 171-188 30-47 (350)
176 3hu3_A Transitional endoplasmi 88.2 2.2 7.4E-05 44.0 10.3 19 171-189 237-255 (489)
177 2z43_A DNA repair and recombin 88.1 1.1 3.6E-05 43.6 7.6 59 171-233 106-165 (324)
178 3m6a_A ATP-dependent protease 87.9 0.57 2E-05 49.1 5.9 18 171-188 107-124 (543)
179 4ddu_A Reverse gyrase; topoiso 87.1 1.5 5.1E-05 50.1 9.0 80 379-458 119-204 (1104)
180 4b4t_M 26S protease regulatory 86.5 0.23 7.7E-06 50.4 1.7 54 132-188 175-231 (434)
181 2hjv_A ATP-dependent RNA helic 86.1 3 0.0001 35.6 8.6 74 210-293 35-112 (163)
182 1p9r_A General secretion pathw 86.0 1.1 3.6E-05 45.3 6.3 18 171-188 166-183 (418)
183 2rb4_A ATP-dependent RNA helic 85.7 3.7 0.00013 35.4 9.1 74 209-292 33-110 (175)
184 3jvv_A Twitching mobility prot 85.6 0.99 3.4E-05 44.5 5.8 18 171-188 122-139 (356)
185 1t6n_A Probable ATP-dependent 85.5 5.4 0.00018 35.7 10.5 73 381-456 82-164 (220)
186 1fuk_A Eukaryotic initiation f 85.2 5.5 0.00019 33.9 9.9 74 210-293 30-107 (165)
187 2i1q_A DNA repair and recombin 84.2 3.4 0.00012 39.8 8.9 21 171-191 97-117 (322)
188 2oap_1 GSPE-2, type II secreti 84.0 1.2 4.3E-05 46.1 6.0 39 148-188 237-276 (511)
189 1e9r_A Conjugal transfer prote 83.9 1.1 3.6E-05 45.6 5.3 44 171-224 52-95 (437)
190 3lda_A DNA repair protein RAD5 83.7 4.7 0.00016 40.2 9.9 20 171-190 177-196 (400)
191 1q57_A DNA primase/helicase; d 83.4 1.9 6.4E-05 44.7 7.1 39 171-218 241-279 (503)
192 3eaq_A Heat resistant RNA depe 83.2 4.1 0.00014 36.5 8.5 71 210-290 31-105 (212)
193 2l82_A Designed protein OR32; 82.7 11 0.00037 29.3 9.2 117 384-506 5-130 (162)
194 3io5_A Recombination and repai 82.2 1.6 5.6E-05 42.0 5.5 41 174-222 30-70 (333)
195 3fe2_A Probable ATP-dependent 81.8 6.5 0.00022 35.8 9.5 73 380-456 101-182 (242)
196 4b4t_J 26S protease regulatory 81.8 0.43 1.5E-05 47.7 1.3 53 133-188 143-198 (405)
197 3b85_A Phosphate starvation-in 81.2 1.9 6.4E-05 38.8 5.3 30 159-188 9-38 (208)
198 2gza_A Type IV secretion syste 81.2 1.1 3.8E-05 44.2 4.1 20 169-188 172-191 (361)
199 1t5i_A C_terminal domain of A 81.0 5.9 0.0002 34.1 8.4 74 210-293 31-108 (172)
200 3hjh_A Transcription-repair-co 80.7 2.3 7.7E-05 43.7 6.3 53 171-236 13-65 (483)
201 1pzn_A RAD51, DNA repair and r 80.7 10 0.00034 37.0 10.9 20 171-190 130-149 (349)
202 2ysa_A Retinoblastoma-binding 80.7 0.51 1.7E-05 32.4 1.0 15 35-49 6-20 (55)
203 1xwi_A SKD1 protein; VPS4B, AA 80.2 1.7 5.8E-05 42.1 5.0 53 133-189 7-62 (322)
204 1oyw_A RECQ helicase, ATP-depe 80.0 3 0.0001 43.3 7.2 59 381-440 65-123 (523)
205 1vec_A ATP-dependent RNA helic 80.0 7.8 0.00027 34.1 9.2 73 380-456 70-152 (206)
206 3cmu_A Protein RECA, recombina 80.0 1 3.4E-05 54.1 3.8 42 171-222 1426-1467(2050)
207 3i5x_A ATP-dependent RNA helic 79.5 16 0.00054 38.0 12.7 79 208-293 337-419 (563)
208 3pxi_A Negative regulator of g 79.5 8 0.00027 42.2 10.7 16 174-189 523-538 (758)
209 3ber_A Probable ATP-dependent 79.3 7.9 0.00027 35.5 9.2 72 381-456 111-192 (249)
210 2qgz_A Helicase loader, putati 79.1 2.9 9.9E-05 40.1 6.2 18 172-189 152-169 (308)
211 3hws_A ATP-dependent CLP prote 78.9 2.4 8.2E-05 41.7 5.7 19 171-189 50-68 (363)
212 2jgn_A DBX, DDX3, ATP-dependen 78.8 4.3 0.00015 35.5 6.8 72 209-290 45-120 (185)
213 1kgd_A CASK, peripheral plasma 78.7 1.2 4E-05 39.0 3.0 18 171-188 4-21 (180)
214 4b4t_L 26S protease subunit RP 78.2 0.8 2.7E-05 46.4 2.0 54 132-188 175-231 (437)
215 3iuy_A Probable ATP-dependent 78.2 6.1 0.00021 35.5 8.0 73 380-456 93-173 (228)
216 2v1x_A ATP-dependent DNA helic 78.0 3.4 0.00012 43.6 6.9 59 381-440 84-144 (591)
217 2pt7_A CAG-ALFA; ATPase, prote 77.8 1.2 4.2E-05 43.3 3.1 18 170-187 169-186 (330)
218 1qhx_A CPT, protein (chloramph 77.8 1 3.5E-05 39.0 2.3 18 172-189 3-20 (178)
219 1gku_B Reverse gyrase, TOP-RG; 77.4 5.6 0.00019 45.2 8.8 76 379-456 97-181 (1054)
220 3cf0_A Transitional endoplasmi 77.2 2.5 8.7E-05 40.3 5.2 56 133-189 10-66 (301)
221 2i4i_A ATP-dependent RNA helic 77.1 11 0.00037 37.3 10.2 72 209-290 275-350 (417)
222 2oxc_A Probable ATP-dependent 77.1 6.7 0.00023 35.4 7.9 72 380-456 91-172 (230)
223 2gxq_A Heat resistant RNA depe 76.9 11 0.00036 33.1 9.1 73 380-456 71-150 (207)
224 2qz4_A Paraplegin; AAA+, SPG7, 76.9 1.3 4.3E-05 41.1 2.9 19 171-189 38-56 (262)
225 2ewv_A Twitching motility prot 76.9 1.4 4.8E-05 43.7 3.3 19 170-188 134-152 (372)
226 3sqw_A ATP-dependent RNA helic 76.4 21 0.0007 37.4 12.5 80 208-294 286-369 (579)
227 2zts_A Putative uncharacterize 76.4 1.8 6E-05 39.7 3.7 51 171-231 29-79 (251)
228 2bjv_A PSP operon transcriptio 76.2 1.9 6.5E-05 40.2 3.9 19 170-188 27-45 (265)
229 4ag6_A VIRB4 ATPase, type IV s 76.0 2.3 7.7E-05 42.4 4.6 42 171-222 34-75 (392)
230 3vaa_A Shikimate kinase, SK; s 75.9 1.6 5.4E-05 38.8 3.1 19 171-189 24-42 (199)
231 1dsq_A Nucleic acid binding pr 75.7 0.72 2.5E-05 26.2 0.5 13 37-49 3-15 (26)
232 3iij_A Coilin-interacting nucl 75.7 1.3 4.5E-05 38.5 2.5 20 170-189 9-28 (180)
233 3a8t_A Adenylate isopentenyltr 75.6 1.3 4.4E-05 43.1 2.6 18 173-190 41-58 (339)
234 3tau_A Guanylate kinase, GMP k 75.4 1.6 5.6E-05 39.0 3.1 18 171-188 7-24 (208)
235 2pl3_A Probable ATP-dependent 75.2 7.8 0.00027 35.0 7.8 72 380-456 96-177 (236)
236 2qmh_A HPR kinase/phosphorylas 75.1 1.4 4.9E-05 39.3 2.5 19 171-189 33-51 (205)
237 1rj9_A FTSY, signal recognitio 75.0 3 0.0001 39.9 5.0 25 172-198 102-126 (304)
238 4b4t_K 26S protease regulatory 75.0 1.1 3.6E-05 45.3 1.8 54 132-188 166-222 (428)
239 3exa_A TRNA delta(2)-isopenten 74.7 1.4 4.9E-05 42.3 2.6 17 173-189 4-20 (322)
240 4b4t_I 26S protease regulatory 74.7 1.5 5E-05 44.1 2.7 54 132-188 176-232 (437)
241 1lvg_A Guanylate kinase, GMP k 74.6 1.8 6E-05 38.6 3.1 18 171-188 3-20 (198)
242 3trf_A Shikimate kinase, SK; a 74.6 1.7 5.9E-05 37.8 3.0 19 172-190 5-23 (185)
243 2l8b_A Protein TRAI, DNA helic 74.4 4.6 0.00016 35.3 5.4 58 159-225 36-95 (189)
244 1u0j_A DNA replication protein 74.0 6 0.00021 36.9 6.6 43 145-190 74-122 (267)
245 3nbx_X ATPase RAVA; AAA+ ATPas 73.9 1.7 5.7E-05 44.9 3.0 26 163-188 32-57 (500)
246 3lw7_A Adenylate kinase relate 73.7 1.4 4.8E-05 37.7 2.1 16 174-189 3-18 (179)
247 1wrb_A DJVLGB; RNA helicase, D 73.7 27 0.00091 31.8 11.2 72 381-456 100-180 (253)
248 3bor_A Human initiation factor 73.5 4.1 0.00014 37.1 5.4 74 380-456 97-179 (237)
249 2r44_A Uncharacterized protein 73.4 1.5 5.2E-05 42.4 2.5 23 167-189 41-63 (331)
250 3nwn_A Kinesin-like protein KI 73.4 2.3 7.8E-05 41.8 3.7 25 165-189 96-122 (359)
251 2j41_A Guanylate kinase; GMP, 73.2 2 6.7E-05 38.1 3.0 19 170-188 4-22 (207)
252 3b5x_A Lipid A export ATP-bind 73.1 6 0.00021 41.6 7.2 41 282-322 496-536 (582)
253 3uk6_A RUVB-like 2; hexameric 73.0 3.5 0.00012 40.3 5.1 18 172-189 70-87 (368)
254 3foz_A TRNA delta(2)-isopenten 72.9 1.8 6.2E-05 41.5 2.8 16 174-189 12-27 (316)
255 2d7d_A Uvrabc system protein B 72.9 35 0.0012 36.4 13.2 79 209-297 444-526 (661)
256 2qor_A Guanylate kinase; phosp 72.9 2 6.8E-05 38.3 3.0 21 169-189 9-29 (204)
257 2hqh_E Restin; beta/BETA struc 72.8 1.1 3.6E-05 25.2 0.6 14 36-49 3-16 (26)
258 1kht_A Adenylate kinase; phosp 72.8 1.6 5.5E-05 38.1 2.3 18 172-189 3-20 (192)
259 3ney_A 55 kDa erythrocyte memb 72.8 2.1 7.2E-05 38.1 3.0 18 171-188 18-35 (197)
260 4akg_A Glutathione S-transfera 72.4 3.5 0.00012 51.2 5.7 48 142-190 890-941 (2695)
261 3i32_A Heat resistant RNA depe 72.4 7.8 0.00027 36.9 7.2 73 210-292 28-104 (300)
262 3tr0_A Guanylate kinase, GMP k 72.4 2.1 7.2E-05 37.9 3.0 18 171-188 6-23 (205)
263 1wp9_A ATP-dependent RNA helic 72.1 13 0.00044 37.2 9.4 72 380-456 51-131 (494)
264 1zp6_A Hypothetical protein AT 71.9 1.7 5.7E-05 38.1 2.2 19 170-188 7-25 (191)
265 1bg2_A Kinesin; motor protein, 71.8 2.7 9.2E-05 40.7 3.8 25 165-189 69-95 (325)
266 1kag_A SKI, shikimate kinase I 71.8 2.5 8.7E-05 36.2 3.3 17 172-188 4-20 (173)
267 2ze6_A Isopentenyl transferase 71.7 2 6.9E-05 39.9 2.8 15 175-189 4-18 (253)
268 3b9q_A Chloroplast SRP recepto 71.2 3 0.0001 39.9 3.9 26 171-198 99-124 (302)
269 3ly5_A ATP-dependent RNA helic 71.0 19 0.00065 33.2 9.5 73 380-456 125-207 (262)
270 1v8k_A Kinesin-like protein KI 70.8 2.8 9.5E-05 41.9 3.7 24 166-189 147-172 (410)
271 3dc4_A Kinesin-like protein NO 70.7 2.5 8.7E-05 41.2 3.3 24 166-189 87-112 (344)
272 3b9p_A CG5977-PA, isoform A; A 70.6 1.8 6E-05 41.1 2.2 18 172-189 54-71 (297)
273 3t0q_A AGR253WP; kinesin, alph 70.6 2.9 9.8E-05 41.0 3.7 25 165-189 77-103 (349)
274 1tue_A Replication protein E1; 70.5 2.2 7.6E-05 38.2 2.6 21 174-195 60-80 (212)
275 1y63_A LMAJ004144AAA protein; 70.5 2.5 8.7E-05 36.9 3.1 19 171-189 9-27 (184)
276 1ofh_A ATP-dependent HSL prote 70.4 6.2 0.00021 37.2 6.1 19 171-189 49-67 (310)
277 4etp_A Kinesin-like protein KA 70.2 3 0.0001 41.7 3.8 25 165-189 132-158 (403)
278 2px0_A Flagellar biosynthesis 70.1 4.8 0.00017 38.3 5.2 20 171-190 104-123 (296)
279 2vvg_A Kinesin-2; motor protei 70.0 3.1 0.00011 40.7 3.8 25 165-189 81-107 (350)
280 3b6u_A Kinesin-like protein KI 69.9 3 0.0001 41.1 3.7 25 165-189 93-119 (372)
281 1ex7_A Guanylate kinase; subst 69.8 2.3 7.7E-05 37.6 2.5 16 173-188 2-17 (186)
282 2x8a_A Nuclear valosin-contain 69.8 0.93 3.2E-05 42.8 -0.0 53 133-188 5-60 (274)
283 2h58_A Kinesin-like protein KI 69.7 3.2 0.00011 40.3 3.8 26 164-189 71-98 (330)
284 1ojl_A Transcriptional regulat 69.7 3 0.0001 40.0 3.6 19 171-189 24-42 (304)
285 1t5c_A CENP-E protein, centrom 69.7 3.1 0.00011 40.7 3.7 25 165-189 69-95 (349)
286 2y65_A Kinesin, kinesin heavy 69.7 3.2 0.00011 40.9 3.8 25 165-189 76-102 (365)
287 1goj_A Kinesin, kinesin heavy 69.6 3.2 0.00011 40.7 3.8 24 166-189 73-98 (355)
288 1ly1_A Polynucleotide kinase; 69.5 2 6.8E-05 37.1 2.1 16 174-189 4-19 (181)
289 3fht_A ATP-dependent RNA helic 69.5 14 0.00046 36.4 8.6 73 210-292 266-342 (412)
290 1tf7_A KAIC; homohexamer, hexa 69.4 28 0.00096 35.9 11.3 19 170-188 279-297 (525)
291 1xti_A Probable ATP-dependent 69.4 20 0.00067 34.9 9.8 73 381-456 76-158 (391)
292 2nr8_A Kinesin-like protein KI 69.3 3.2 0.00011 40.7 3.7 25 165-189 95-121 (358)
293 3lre_A Kinesin-like protein KI 69.3 3.3 0.00011 40.6 3.8 25 165-189 97-123 (355)
294 1f9v_A Kinesin-like protein KA 69.2 2.9 9.9E-05 40.9 3.4 25 165-189 76-102 (347)
295 3gbj_A KIF13B protein; kinesin 69.2 3.2 0.00011 40.6 3.7 25 165-189 84-110 (354)
296 2zfi_A Kinesin-like protein KI 69.1 3.3 0.00011 40.8 3.8 25 165-189 81-107 (366)
297 1lv7_A FTSH; alpha/beta domain 69.1 2 6.8E-05 39.8 2.1 18 172-189 45-62 (257)
298 4a14_A Kinesin, kinesin-like p 69.1 3.3 0.00011 40.4 3.8 25 165-189 75-101 (344)
299 3a00_A Guanylate kinase, GMP k 69.0 2.9 0.0001 36.5 3.1 16 173-188 2-17 (186)
300 1x88_A Kinesin-like protein KI 68.9 3.1 0.0001 40.9 3.5 25 165-189 80-106 (359)
301 3kb2_A SPBC2 prophage-derived 68.8 2.1 7.1E-05 36.6 2.1 16 174-189 3-18 (173)
302 1c4o_A DNA nucleotide excision 68.8 1.1E+02 0.0038 32.4 16.1 78 209-296 438-519 (664)
303 1w36_B RECB, exodeoxyribonucle 68.8 7.9 0.00027 44.6 7.4 61 173-233 17-79 (1180)
304 1nc8_A Nucleocapsid protein; H 68.6 1.7 5.7E-05 25.4 0.9 13 37-49 7-19 (29)
305 3cm0_A Adenylate kinase; ATP-b 68.5 2.1 7.2E-05 37.2 2.1 19 171-189 3-21 (186)
306 1z6g_A Guanylate kinase; struc 68.4 3.2 0.00011 37.5 3.3 19 170-188 21-39 (218)
307 4gp7_A Metallophosphoesterase; 68.4 2 6.8E-05 37.1 1.9 19 171-189 8-26 (171)
308 3c8u_A Fructokinase; YP_612366 68.4 3 0.0001 37.2 3.2 18 171-188 21-38 (208)
309 3crm_A TRNA delta(2)-isopenten 67.8 2.7 9.3E-05 40.6 2.8 16 174-189 7-22 (323)
310 3pey_A ATP-dependent RNA helic 67.6 17 0.00057 35.4 8.8 76 209-294 242-321 (395)
311 1ixz_A ATP-dependent metallopr 67.5 1.7 5.9E-05 40.2 1.3 51 133-188 11-65 (254)
312 2heh_A KIF2C protein; kinesin, 67.5 3.5 0.00012 40.9 3.6 25 165-189 126-152 (387)
313 2zr9_A Protein RECA, recombina 67.3 5.3 0.00018 39.0 4.9 39 171-219 60-98 (349)
314 1knq_A Gluconate kinase; ALFA/ 67.3 2.1 7.3E-05 36.8 1.8 18 172-189 8-25 (175)
315 3cob_A Kinesin heavy chain-lik 67.1 3.2 0.00011 40.9 3.2 25 165-189 71-97 (369)
316 3d3q_A TRNA delta(2)-isopenten 66.9 2.9 9.8E-05 40.7 2.8 16 174-189 9-24 (340)
317 1u94_A RECA protein, recombina 66.8 5.7 0.00019 39.0 5.0 39 171-219 62-100 (356)
318 2wbe_C Bipolar kinesin KRP-130 66.8 3.4 0.00012 40.8 3.3 25 165-189 92-118 (373)
319 2og2_A Putative signal recogni 66.7 4.1 0.00014 40.0 3.9 25 172-198 157-181 (359)
320 4eun_A Thermoresistant glucoki 66.7 3.4 0.00012 36.6 3.1 18 171-188 28-45 (200)
321 3u06_A Protein claret segregat 66.4 3.5 0.00012 41.2 3.4 26 164-189 129-156 (412)
322 3nwj_A ATSK2; P loop, shikimat 66.4 3.8 0.00013 38.0 3.4 19 171-189 47-65 (250)
323 4f4c_A Multidrug resistance pr 66.3 2 6.8E-05 50.1 1.8 25 171-197 1104-1128(1321)
324 2r8r_A Sensor protein; KDPD, P 66.2 6.1 0.00021 35.9 4.7 20 174-193 8-27 (228)
325 3t15_A Ribulose bisphosphate c 66.1 2.4 8.1E-05 40.4 2.0 17 173-189 37-53 (293)
326 3dkp_A Probable ATP-dependent 66.1 7.4 0.00025 35.4 5.4 74 380-456 97-181 (245)
327 3e70_C DPA, signal recognition 65.9 4.2 0.00014 39.4 3.8 26 171-198 128-153 (328)
328 2owm_A Nckin3-434, related to 65.7 4.1 0.00014 41.2 3.8 25 165-189 128-154 (443)
329 3bfn_A Kinesin-like protein KI 65.6 3.4 0.00011 41.0 3.0 23 167-189 92-116 (388)
330 1qde_A EIF4A, translation init 65.5 10 0.00035 33.8 6.2 72 380-456 81-161 (224)
331 1vma_A Cell division protein F 65.5 4.5 0.00015 38.8 3.8 19 172-190 104-122 (306)
332 1tev_A UMP-CMP kinase; ploop, 65.3 2.4 8.2E-05 37.0 1.8 18 172-189 3-20 (196)
333 2cvh_A DNA repair and recombin 65.1 3.2 0.00011 37.0 2.7 20 171-190 19-38 (220)
334 1f2t_A RAD50 ABC-ATPase; DNA d 65.1 4.3 0.00015 34.1 3.3 15 174-188 25-39 (149)
335 2rep_A Kinesin-like protein KI 65.0 4.3 0.00015 40.1 3.6 25 165-189 107-133 (376)
336 2yvu_A Probable adenylyl-sulfa 64.8 5 0.00017 34.8 3.8 19 171-189 12-30 (186)
337 2r2a_A Uncharacterized protein 64.7 4 0.00014 36.3 3.1 17 174-190 7-23 (199)
338 3eph_A TRNA isopentenyltransfe 64.4 3.3 0.00011 41.3 2.7 15 175-189 5-19 (409)
339 1ye8_A Protein THEP1, hypothet 64.3 4.5 0.00015 35.3 3.3 15 174-188 2-16 (178)
340 2c95_A Adenylate kinase 1; tra 64.3 4.1 0.00014 35.6 3.2 19 171-189 8-26 (196)
341 2i3b_A HCR-ntpase, human cance 64.2 5.2 0.00018 35.2 3.8 41 282-324 103-145 (189)
342 2v9p_A Replication protein E1; 64.1 4.1 0.00014 39.0 3.2 25 171-197 125-149 (305)
343 2rhm_A Putative kinase; P-loop 63.9 2.7 9.2E-05 36.7 1.8 18 172-189 5-22 (193)
344 1s2m_A Putative ATP-dependent 63.9 20 0.00067 35.2 8.5 74 209-292 257-334 (400)
345 1znw_A Guanylate kinase, GMP k 63.9 4.1 0.00014 36.3 3.1 21 168-188 16-36 (207)
346 3kta_A Chromosome segregation 63.8 4.2 0.00014 35.2 3.1 22 174-197 28-49 (182)
347 1xjc_A MOBB protein homolog; s 63.8 6.2 0.00021 34.1 4.1 15 174-188 6-20 (169)
348 1hv8_A Putative ATP-dependent 63.7 24 0.00083 33.7 9.0 74 209-292 237-314 (367)
349 1s96_A Guanylate kinase, GMP k 63.7 4.2 0.00014 36.8 3.1 20 169-188 13-32 (219)
350 2v54_A DTMP kinase, thymidylat 63.0 3.9 0.00013 36.0 2.8 19 171-189 3-21 (204)
351 3uie_A Adenylyl-sulfate kinase 63.0 3.7 0.00013 36.3 2.6 19 171-189 24-42 (200)
352 1um8_A ATP-dependent CLP prote 63.0 4.3 0.00015 40.0 3.3 19 171-189 71-89 (376)
353 1xp8_A RECA protein, recombina 62.9 7.3 0.00025 38.3 4.9 39 171-219 73-111 (366)
354 2ehv_A Hypothetical protein PH 62.8 4.2 0.00014 37.1 3.1 20 170-189 28-47 (251)
355 2qp9_X Vacuolar protein sortin 62.6 4.3 0.00015 39.8 3.2 18 172-189 84-101 (355)
356 1gvn_B Zeta; postsegregational 62.6 3.1 0.00011 39.4 2.1 17 173-189 34-50 (287)
357 2j0s_A ATP-dependent RNA helic 62.6 20 0.0007 35.2 8.3 73 210-292 276-352 (410)
358 1ak2_A Adenylate kinase isoenz 62.1 4.4 0.00015 36.8 3.0 20 171-190 15-34 (233)
359 3lnc_A Guanylate kinase, GMP k 62.0 3.6 0.00012 37.3 2.4 18 171-188 26-43 (231)
360 2db3_A ATP-dependent RNA helic 61.9 27 0.00093 34.9 9.2 69 212-290 302-374 (434)
361 1via_A Shikimate kinase; struc 61.8 4.8 0.00016 34.6 3.1 16 174-189 6-21 (175)
362 2yhs_A FTSY, cell division pro 61.7 5.4 0.00019 40.8 3.8 16 173-188 294-309 (503)
363 3t61_A Gluconokinase; PSI-biol 61.6 4.4 0.00015 35.8 2.8 17 173-189 19-35 (202)
364 1zuh_A Shikimate kinase; alpha 61.6 4.5 0.00015 34.4 2.8 18 173-190 8-25 (168)
365 2c9o_A RUVB-like 1; hexameric 61.4 4.2 0.00014 41.4 3.0 18 172-189 63-80 (456)
366 1iy2_A ATP-dependent metallopr 61.3 3.5 0.00012 38.7 2.2 51 133-188 35-89 (278)
367 2plr_A DTMP kinase, probable t 61.3 4 0.00014 36.2 2.5 19 171-189 3-21 (213)
368 3fmo_B ATP-dependent RNA helic 61.1 20 0.00069 33.9 7.6 81 369-456 148-241 (300)
369 2ius_A DNA translocase FTSK; n 61.1 11 0.00036 39.0 5.9 19 171-189 166-184 (512)
370 3hr8_A Protein RECA; alpha and 61.0 7.5 0.00026 38.1 4.6 42 171-222 60-101 (356)
371 2r62_A Cell division protease 61.0 2 6.7E-05 40.1 0.4 18 172-189 44-61 (268)
372 1m7g_A Adenylylsulfate kinase; 61.0 4.5 0.00015 36.1 2.8 30 159-189 13-42 (211)
373 3vkg_A Dynein heavy chain, cyt 60.8 8.3 0.00028 48.6 5.8 48 142-190 873-924 (3245)
374 3asz_A Uridine kinase; cytidin 60.7 5.1 0.00018 35.6 3.1 17 172-188 6-22 (211)
375 4fcw_A Chaperone protein CLPB; 60.6 3.3 0.00011 39.4 1.9 17 173-189 48-64 (311)
376 2bdt_A BH3686; alpha-beta prot 60.6 3.5 0.00012 36.0 1.9 16 173-188 3-18 (189)
377 2iyv_A Shikimate kinase, SK; t 60.5 5.5 0.00019 34.5 3.2 17 173-189 3-19 (184)
378 1n0w_A DNA repair protein RAD5 60.4 4.9 0.00017 36.5 3.0 21 171-191 23-43 (243)
379 1zu4_A FTSY; GTPase, signal re 60.3 6.3 0.00021 38.0 3.8 19 172-190 105-123 (320)
380 3d8b_A Fidgetin-like protein 1 60.3 4.6 0.00016 39.6 2.9 19 171-189 116-134 (357)
381 3tif_A Uncharacterized ABC tra 60.2 4.3 0.00015 37.2 2.5 17 171-187 30-46 (235)
382 1e6c_A Shikimate kinase; phosp 60.1 4.2 0.00014 34.7 2.4 17 173-189 3-19 (173)
383 1yks_A Genome polyprotein [con 60.0 11 0.00037 38.1 5.8 68 210-289 177-245 (440)
384 3fb4_A Adenylate kinase; psych 59.9 4.8 0.00016 35.9 2.8 17 174-190 2-18 (216)
385 1ry6_A Internal kinesin; kines 59.7 5.5 0.00019 39.1 3.3 19 171-189 82-102 (360)
386 1aky_A Adenylate kinase; ATP:A 59.3 5.5 0.00019 35.7 3.1 18 172-189 4-21 (220)
387 1nks_A Adenylate kinase; therm 59.3 5 0.00017 34.8 2.8 16 174-189 3-18 (194)
388 3vfd_A Spastin; ATPase, microt 59.2 3.9 0.00013 40.6 2.2 18 172-189 148-165 (389)
389 3sr0_A Adenylate kinase; phosp 59.2 5.1 0.00017 35.9 2.8 16 175-190 3-18 (206)
390 3u4q_B ATP-dependent helicase/ 59.1 7.9 0.00027 44.5 5.0 40 175-221 4-43 (1166)
391 2iut_A DNA translocase FTSK; n 59.1 11 0.00039 39.2 5.7 25 173-198 215-239 (574)
392 2pez_A Bifunctional 3'-phospho 59.0 3.8 0.00013 35.4 1.9 18 171-188 4-21 (179)
393 3dl0_A Adenylate kinase; phosp 58.9 5.1 0.00017 35.8 2.8 17 174-190 2-18 (216)
394 1zak_A Adenylate kinase; ATP:A 58.8 5.9 0.0002 35.6 3.2 18 172-189 5-22 (222)
395 2qt1_A Nicotinamide riboside k 58.6 3.2 0.00011 36.9 1.3 19 171-189 20-38 (207)
396 2yjt_D ATP-dependent RNA helic 63.1 2 7E-05 37.0 0.0 73 210-292 30-106 (170)
397 1htw_A HI0065; nucleotide-bind 58.5 5.2 0.00018 34.1 2.6 26 170-197 31-56 (158)
398 1zd8_A GTP:AMP phosphotransfer 58.4 5.5 0.00019 36.0 2.9 18 172-189 7-24 (227)
399 1g8p_A Magnesium-chelatase 38 58.3 2.9 0.0001 40.5 1.1 19 171-189 44-62 (350)
400 1qf9_A UMP/CMP kinase, protein 58.1 5.4 0.00018 34.6 2.7 16 174-189 8-23 (194)
401 4a74_A DNA repair and recombin 58.0 4.8 0.00017 36.1 2.5 18 171-188 24-41 (231)
402 3umf_A Adenylate kinase; rossm 57.9 5.6 0.00019 35.9 2.9 19 172-190 29-47 (217)
403 2cdn_A Adenylate kinase; phosp 57.7 5.1 0.00017 35.3 2.5 18 172-189 20-37 (201)
404 2bwj_A Adenylate kinase 5; pho 57.5 5.8 0.0002 34.7 2.9 19 171-189 11-29 (199)
405 1q0u_A Bstdead; DEAD protein, 57.5 9.2 0.00031 34.1 4.3 72 381-456 72-156 (219)
406 1nij_A Hypothetical protein YJ 57.4 9.2 0.00032 36.7 4.5 14 175-188 7-20 (318)
407 3nh6_A ATP-binding cassette SU 57.4 3.1 0.00011 39.9 1.1 17 171-187 79-95 (306)
408 3ice_A Transcription terminati 57.3 23 0.0008 35.0 7.3 30 160-189 159-191 (422)
409 2cbz_A Multidrug resistance-as 57.1 5.2 0.00018 36.7 2.5 17 171-187 30-46 (237)
410 1cke_A CK, MSSA, protein (cyti 56.9 5.7 0.0002 35.6 2.8 17 173-189 6-22 (227)
411 2vli_A Antibiotic resistance p 56.9 4 0.00014 35.2 1.7 18 172-189 5-22 (183)
412 1in4_A RUVB, holliday junction 56.9 5.9 0.0002 38.3 3.0 16 173-188 52-67 (334)
413 2pt5_A Shikimate kinase, SK; a 56.7 4.8 0.00016 34.2 2.1 16 174-189 2-17 (168)
414 3tqc_A Pantothenate kinase; bi 56.6 19 0.00064 34.6 6.5 22 175-198 95-116 (321)
415 3auy_A DNA double-strand break 56.4 6.4 0.00022 38.8 3.2 15 174-188 27-41 (371)
416 1ukz_A Uridylate kinase; trans 56.4 4.8 0.00016 35.5 2.1 16 174-189 17-32 (203)
417 2zan_A Vacuolar protein sortin 56.3 4.4 0.00015 41.1 2.1 54 132-189 128-184 (444)
418 1jjv_A Dephospho-COA kinase; P 56.3 4.8 0.00016 35.6 2.1 16 174-189 4-19 (206)
419 1rz3_A Hypothetical protein rb 56.2 9.2 0.00031 33.7 4.0 17 173-189 23-39 (201)
420 4g1u_C Hemin import ATP-bindin 56.0 5.2 0.00018 37.4 2.3 17 171-187 36-52 (266)
421 2wwf_A Thymidilate kinase, put 55.7 6.7 0.00023 34.7 3.0 19 171-189 9-27 (212)
422 2if2_A Dephospho-COA kinase; a 55.6 4.9 0.00017 35.5 2.1 16 174-189 3-18 (204)
423 3cmw_A Protein RECA, recombina 55.5 6.2 0.00021 46.7 3.3 52 171-235 1430-1481(1706)
424 1v5w_A DMC1, meiotic recombina 55.4 6.8 0.00023 38.1 3.2 46 171-220 121-166 (343)
425 3f9v_A Minichromosome maintena 55.3 5.8 0.0002 41.9 2.8 15 174-188 329-343 (595)
426 3qks_A DNA double-strand break 55.3 7.7 0.00026 34.5 3.3 23 174-198 25-47 (203)
427 1fuu_A Yeast initiation factor 55.3 39 0.0013 32.7 8.9 72 380-456 88-168 (394)
428 3qf7_A RAD50; ABC-ATPase, ATPa 55.2 6.7 0.00023 38.5 3.1 16 174-189 25-40 (365)
429 2jaq_A Deoxyguanosine kinase; 55.1 6.5 0.00022 34.4 2.8 16 174-189 2-17 (205)
430 2j37_W Signal recognition part 55.1 49 0.0017 33.9 9.7 17 174-190 103-119 (504)
431 2pbr_A DTMP kinase, thymidylat 54.8 5.3 0.00018 34.7 2.1 15 175-189 3-17 (195)
432 3pxg_A Negative regulator of g 54.6 7.5 0.00026 39.7 3.5 19 171-189 200-218 (468)
433 3a4m_A L-seryl-tRNA(SEC) kinas 54.4 5.2 0.00018 37.1 2.1 17 173-189 5-21 (260)
434 1sgw_A Putative ABC transporte 54.4 7.7 0.00026 34.9 3.1 17 171-187 34-50 (214)
435 2ghi_A Transport protein; mult 54.4 6 0.00021 36.8 2.5 17 171-187 45-61 (260)
436 3be4_A Adenylate kinase; malar 54.3 7.1 0.00024 35.0 2.9 18 172-189 5-22 (217)
437 1nn5_A Similar to deoxythymidy 54.3 7.3 0.00025 34.5 3.0 19 171-189 8-26 (215)
438 1sky_E F1-ATPase, F1-ATP synth 54.1 19 0.00064 36.6 6.2 22 169-190 148-169 (473)
439 1e4v_A Adenylate kinase; trans 53.8 6.9 0.00023 34.9 2.7 16 174-189 2-17 (214)
440 3eiq_A Eukaryotic initiation f 53.5 30 0.001 33.9 7.7 74 380-456 107-189 (414)
441 2z0h_A DTMP kinase, thymidylat 53.4 5.7 0.0002 34.6 2.1 15 175-189 3-17 (197)
442 3k1j_A LON protease, ATP-depen 53.1 11 0.00036 40.0 4.5 21 168-188 56-76 (604)
443 3gfo_A Cobalt import ATP-bindi 53.1 7.3 0.00025 36.6 2.9 17 171-187 33-49 (275)
444 2f1r_A Molybdopterin-guanine d 53.1 4.3 0.00015 35.1 1.2 15 174-188 4-18 (171)
445 2ff7_A Alpha-hemolysin translo 53.1 7.5 0.00026 35.8 2.9 17 171-187 34-50 (247)
446 2pze_A Cystic fibrosis transme 53.0 7.6 0.00026 35.3 2.9 17 171-187 33-49 (229)
447 2pcj_A ABC transporter, lipopr 52.9 7.6 0.00026 35.2 2.9 17 171-187 29-45 (224)
448 1g41_A Heat shock protein HSLU 52.8 6.6 0.00022 39.7 2.6 18 172-189 50-67 (444)
449 4e22_A Cytidylate kinase; P-lo 52.8 7.8 0.00027 35.7 3.0 18 171-188 26-43 (252)
450 2v6i_A RNA helicase; membrane, 52.8 17 0.00059 36.4 5.8 67 210-288 171-238 (431)
451 3tlx_A Adenylate kinase 2; str 52.7 10 0.00035 34.7 3.8 19 172-190 29-47 (243)
452 1uf9_A TT1252 protein; P-loop, 52.7 7.4 0.00025 34.1 2.8 16 174-189 10-25 (203)
453 2xau_A PRE-mRNA-splicing facto 52.6 29 0.001 37.7 8.0 76 209-290 302-393 (773)
454 2p5t_B PEZT; postsegregational 52.4 4.1 0.00014 37.7 1.0 17 173-189 33-49 (253)
455 1mv5_A LMRA, multidrug resista 52.3 5.8 0.0002 36.5 2.0 17 171-187 27-43 (243)
456 4f4c_A Multidrug resistance pr 51.5 6.4 0.00022 45.9 2.6 39 282-320 570-609 (1321)
457 2xb4_A Adenylate kinase; ATP-b 51.4 8 0.00027 34.8 2.8 15 175-189 3-17 (223)
458 1b0u_A Histidine permease; ABC 51.4 7.2 0.00025 36.3 2.5 17 171-187 31-47 (262)
459 1g6h_A High-affinity branched- 51.3 8.2 0.00028 35.8 2.9 17 171-187 32-48 (257)
460 2bbw_A Adenylate kinase 4, AK4 51.3 8.4 0.00029 35.2 3.0 17 172-188 27-43 (246)
461 2zu0_C Probable ATP-dependent 51.3 7.7 0.00026 36.2 2.7 17 171-187 45-61 (267)
462 3aez_A Pantothenate kinase; tr 51.2 8.7 0.0003 36.8 3.1 26 171-198 89-114 (312)
463 2v3c_C SRP54, signal recogniti 51.1 12 0.0004 37.7 4.2 19 173-191 100-118 (432)
464 1vpl_A ABC transporter, ATP-bi 51.0 7.4 0.00025 36.1 2.5 17 171-187 40-56 (256)
465 2ixe_A Antigen peptide transpo 50.8 7.4 0.00025 36.4 2.5 17 171-187 44-60 (271)
466 1ji0_A ABC transporter; ATP bi 50.7 8.6 0.00029 35.2 2.9 17 171-187 31-47 (240)
467 1np6_A Molybdopterin-guanine d 50.7 14 0.00047 32.0 4.1 15 174-188 8-22 (174)
468 2wv9_A Flavivirin protease NS2 50.7 19 0.00065 38.5 6.0 70 209-290 409-479 (673)
469 2ce7_A Cell division protein F 50.6 6.2 0.00021 40.3 2.1 17 173-189 50-66 (476)
470 2olj_A Amino acid ABC transpor 50.5 7.6 0.00026 36.2 2.5 17 171-187 49-65 (263)
471 4a2p_A RIG-I, retinoic acid in 50.5 30 0.001 35.5 7.5 72 381-456 55-136 (556)
472 1ls1_A Signal recognition part 50.1 12 0.0004 35.6 3.8 20 171-190 97-116 (295)
473 2yz2_A Putative ABC transporte 49.9 7.8 0.00027 36.1 2.5 17 171-187 32-48 (266)
474 1vht_A Dephospho-COA kinase; s 49.5 7.1 0.00024 34.9 2.1 16 174-189 6-21 (218)
475 2qi9_C Vitamin B12 import ATP- 49.5 9.2 0.00032 35.3 2.9 17 171-187 25-41 (249)
476 1c9k_A COBU, adenosylcobinamid 49.4 10 0.00035 33.0 3.0 15 175-189 2-16 (180)
477 2d2e_A SUFC protein; ABC-ATPas 49.4 9.8 0.00034 35.1 3.1 17 171-187 28-44 (250)
478 3cf2_A TER ATPase, transitiona 49.2 7.2 0.00025 42.6 2.4 55 131-188 470-527 (806)
479 2ffh_A Protein (FFH); SRP54, s 49.1 15 0.0005 36.9 4.5 19 172-190 98-116 (425)
480 2grj_A Dephospho-COA kinase; T 49.0 7.5 0.00026 34.3 2.1 16 174-189 14-29 (192)
481 1odf_A YGR205W, hypothetical 3 48.9 11 0.00037 35.7 3.4 16 174-189 33-48 (290)
482 2vhj_A Ntpase P4, P4; non- hyd 48.5 9.2 0.00031 36.8 2.8 21 171-191 122-142 (331)
483 2ihy_A ABC transporter, ATP-bi 48.5 9.6 0.00033 35.8 2.9 17 171-187 46-62 (279)
484 2nq2_C Hypothetical ABC transp 48.4 9.6 0.00033 35.2 2.9 17 171-187 30-46 (253)
485 1j8m_F SRP54, signal recogniti 47.9 12 0.00041 35.6 3.5 19 172-190 98-116 (297)
486 3tqf_A HPR(Ser) kinase; transf 47.8 9.1 0.00031 33.2 2.3 20 171-190 15-34 (181)
487 3bs4_A Uncharacterized protein 47.5 20 0.00068 33.3 4.8 52 171-233 20-71 (260)
488 4h1g_A Maltose binding protein 47.3 12 0.00043 40.3 3.9 25 165-189 454-480 (715)
489 1ltq_A Polynucleotide kinase; 46.8 8 0.00028 36.5 2.1 16 174-189 4-19 (301)
490 4gl2_A Interferon-induced heli 46.7 7.8 0.00027 41.6 2.2 72 381-456 56-142 (699)
491 1uj2_A Uridine-cytidine kinase 46.1 8.5 0.00029 35.4 2.1 16 174-189 24-39 (252)
492 3fkq_A NTRC-like two-domain pr 46.0 31 0.0011 33.7 6.3 18 176-193 148-165 (373)
493 3pxi_A Negative regulator of g 45.9 12 0.0004 40.8 3.5 20 171-190 200-219 (758)
494 4edh_A DTMP kinase, thymidylat 45.9 20 0.00069 32.0 4.5 20 170-189 4-23 (213)
495 3tbk_A RIG-I helicase domain; 45.7 38 0.0013 34.6 7.3 76 209-290 388-476 (555)
496 2bbs_A Cystic fibrosis transme 44.8 10 0.00035 35.9 2.5 17 171-187 63-79 (290)
497 1gtv_A TMK, thymidylate kinase 44.7 6.7 0.00023 34.7 1.1 15 175-189 3-17 (214)
498 3ake_A Cytidylate kinase; CMP 44.6 9.4 0.00032 33.5 2.1 16 174-189 4-19 (208)
499 2f6r_A COA synthase, bifunctio 44.6 9.1 0.00031 36.0 2.1 17 174-190 77-93 (281)
500 3gk5_A Uncharacterized rhodane 44.6 24 0.00083 27.4 4.3 38 379-417 53-90 (108)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-66 Score=543.17 Aligned_cols=385 Identities=34% Similarity=0.615 Sum_probs=357.5
Q ss_pred HhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 119 KRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 119 ~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
....+.+.|...|.|+.+|++++|++.++++|.+.||.+|||+|.++||.+++|++++++||||||||++|++|++.++.
T Consensus 40 ~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 40 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp GGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC
Q 009494 199 NIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH 278 (533)
Q Consensus 199 ~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~ 278 (533)
..... ....++++||++|||+|+.|+++++++++...++++..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 120 ~~~~~--~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 197 (434)
T 2db3_A 120 EDPHE--LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197 (434)
T ss_dssp HSCCC--CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred hcccc--cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC
Confidence 64321 1245789999999999999999999999988889999999999999888888899999999999999999998
Q ss_pred CCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC---CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCce
Q 009494 279 DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVK 355 (533)
Q Consensus 279 ~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~---~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~ 355 (533)
...+.++++||+||||+|++++|...+..++..+ +..|++++|||+|+.+..++..++.++..+.++........+.
T Consensus 198 ~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 277 (434)
T 2db3_A 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK 277 (434)
T ss_dssp SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEE
T ss_pred CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccc
Confidence 8889999999999999999999999999999885 6789999999999999999999999999999888777778889
Q ss_pred EEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcE
Q 009494 356 QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 356 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~V 435 (533)
+.+..+....|...|.+++.... .++||||+++..|+.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|
T Consensus 278 ~~~~~~~~~~k~~~l~~~l~~~~---~~~lVF~~t~~~a~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 353 (434)
T 2db3_A 278 QTIYEVNKYAKRSKLIEILSEQA---DGTIVFVETKRGADFLASFLS-EKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353 (434)
T ss_dssp EEEEECCGGGHHHHHHHHHHHCC---TTEEEECSSHHHHHHHHHHHH-HTTCCEEEESTTSCHHHHHHHHHHHHTSSCSE
T ss_pred eEEEEeCcHHHHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 99999988889999998887653 359999999999999999998 77999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec-CcCHHHHHHHHHHHHHcCCchh
Q 009494 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN-EENKNLFQELVDILKSSGAVRL 509 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~ 509 (533)
||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|++ .++......+.+.|+.+++..+
T Consensus 354 LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 4588899999999999999754
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.1e-61 Score=497.43 Aligned_cols=391 Identities=34% Similarity=0.597 Sum_probs=348.9
Q ss_pred CceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhh
Q 009494 122 EINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIR 201 (533)
Q Consensus 122 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~ 201 (533)
.+.+.|...|.++.+|+++++++.+.++|...||..|+|+|.++++.++.+++++++||||||||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred hc-----------ccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHH
Q 009494 202 LH-----------HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGR 270 (533)
Q Consensus 202 ~~-----------~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~ 270 (533)
.. ......++++||++||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 0011234789999999999999999999998888899999999999988888888899999999999
Q ss_pred HHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--C---CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeC
Q 009494 271 LIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S---LPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 271 l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 345 (533)
|.+++....+.+.++++||+||||++.+++|...+..++... + ..+++++|||+++.+..+...++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999999888889999999999999999999999999998854 2 57899999999999999999999999888887
Q ss_pred CCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHH
Q 009494 346 KPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 346 ~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~ 425 (533)
........+.+.+.++....+...+.+++... ..++++||||+++..++.+++.|. ..++.+..+||++++.+|..++
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLY-HEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCCccCceEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHH-HCCCCeeEecCCCCHHHHHHHH
Confidence 77667778888888888888888888888764 346789999999999999999998 7789999999999999999999
Q ss_pred HHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcC
Q 009494 426 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 505 (533)
Q Consensus 426 ~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 505 (533)
+.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+...+
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CchhhHHhH
Q 009494 506 AVRLMTFCY 514 (533)
Q Consensus 506 ~~~~~~~~~ 514 (533)
+.....+..
T Consensus 400 ~~~~~~l~~ 408 (417)
T 2i4i_A 400 QEVPSWLEN 408 (417)
T ss_dssp CCCCHHHHH
T ss_pred CcCCHHHHH
Confidence 875443333
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-57 Score=473.21 Aligned_cols=365 Identities=28% Similarity=0.558 Sum_probs=330.6
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCC
Q 009494 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
.+.+..+|+++++++.+.+++.+.||..|+|+|.++++.++.++++++++|||||||++|++|++..+.. ...
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------~~~ 104 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------QVR 104 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------TSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------ccC
Confidence 3456778999999999999999999999999999999999999999999999999999999999876532 235
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEE
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 289 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vV 289 (533)
++++||++||++|+.|+.+.+++++...++.+..++||.....+...+..+++|+|+||++|.+.+.+..+.+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 67899999999999999999999998889999999999999988888888999999999999999998888899999999
Q ss_pred EecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchh-HH
Q 009494 290 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 367 (533)
Q Consensus 290 vDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~-k~ 367 (533)
+||||++.+++|...+..++..+ +..|++++|||+++.+..+...++.++..+...........+.+.+..+.... +.
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHH
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999888 56899999999999998888888888888877666666677788877776655 66
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+.+++.... .+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 265 ~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 265 DTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMR-EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHH-hCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 67777766543 4589999999999999999998 77899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 448 i~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
+|++++||++|+|++...|+||+||+||.|+.|.+++|+++.+...++++.+.++..
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 398 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999888887776543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-56 Score=464.56 Aligned_cols=372 Identities=32% Similarity=0.550 Sum_probs=320.5
Q ss_pred cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccC
Q 009494 127 GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 206 (533)
Q Consensus 127 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 206 (533)
....+....+|+++++++.+.+.|.+.||..|+|+|.++++.++.++++++.||||||||++|++|++..+..
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------- 104 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------- 104 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------
Confidence 3455667789999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHH-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 207 NQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 207 ~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
...++++||++||++|+.|+.+.+++++...+..+...+||.....+...+. .+++|+|+||++|.+.+.+..+.+.++
T Consensus 105 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 2356789999999999999999999999888899999999998888777776 668999999999999999988889999
Q ss_pred eEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecch
Q 009494 286 RMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN 364 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~ 364 (533)
++||+||||++.+++|...+..++..+ +..+++++|||++..+..+...++.++..+...........+.+.+......
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH
Confidence 999999999999999999999999888 6889999999999999999999999998888777777777777777776655
Q ss_pred h-HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009494 365 K-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 365 ~-k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
. +...+..++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMH-ARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHH-TTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHH-hcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4 666677776554 35689999999999999999998 7789999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCCch
Q 009494 444 RGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAVR 508 (533)
Q Consensus 444 ~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 508 (533)
+|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.++......
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999888877665543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.5e-55 Score=453.62 Aligned_cols=362 Identities=28% Similarity=0.513 Sum_probs=321.5
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCc
Q 009494 132 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 211 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 211 (533)
.+..+|+++++++.+.++|.+.||.+|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-------~~~~~ 90 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-------KLNKI 90 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------TSCSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------ccCCc
Confidence 34568999999999999999999999999999999999999999999999999999999999987643 13466
Q ss_pred eEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEe
Q 009494 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvD 291 (533)
++||++|+++|+.|+.+.++++....++++....|+.....+...+..+++|+|+||++|.+++.+....+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 89999999999999999999999888899999999998888777777889999999999999998888889999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHH
Q 009494 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l 370 (533)
|||++.+.+|...+..++..+ +..+++++|||++..+.......+..+..+..... .....+.+.+..+....+...+
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHH
Confidence 999999888888888888877 46799999999999998888888887776654432 3445667777777777777777
Q ss_pred HHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 009494 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
..++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 250 ~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 250 NTLFSKL--QINQAIIFCNSTNRVELLAKKIT-DLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHS--CCSEEEEECSSHHHHHHHHHHHH-HHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHhhc--CCCcEEEEEecHHHHHHHHHHHH-hcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 7777653 35689999999999999999998 77899999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 451 v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
+++||++++|++...|+||+||+||.|+.|.|++|+++.+...+.++.+.+...
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999988888877766543
No 6
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6e-54 Score=437.53 Aligned_cols=354 Identities=30% Similarity=0.531 Sum_probs=318.3
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
..+|+++++++.+.+.|.+.||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++..+.. ..+++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------~~~~~ 76 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--------NNGIE 76 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------SSSCC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------cCCCc
Confidence 457999999999999999999999999999999999988 699999999999999999999876543 35778
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEec
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDE 292 (533)
+||++|+++|+.|+.+.++++....++.+...+||.....+...+. +++|+|+||++|.+.+......+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 9999999999999999999998887889999999998877766655 689999999999999998888899999999999
Q ss_pred chhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 293 ah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
||++.+++|...+..++..+ +..+++++|||+++....+...++.++..+.... ...+.+.+.......+...+.
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~ 231 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALC 231 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHH
Confidence 99999999999999998887 6789999999999999888888888877665433 235666677777777877777
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++. ..+.++||||+++..++.+++.|. ..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 232 ~~l~---~~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~ 307 (367)
T 1hv8_A 232 RLLK---NKEFYGLVFCKTKRDTKELASMLR-DIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDL 307 (367)
T ss_dssp HHHC---STTCCEEEECSSHHHHHHHHHHHH-HTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCC
T ss_pred HHHh---cCCCcEEEEECCHHHHHHHHHHHH-hcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccC
Confidence 7775 456789999999999999999998 778999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 452 ~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
++||++++|+|...|+||+||+||.|+.|.+++++++.+...+..+.+.++..
T Consensus 308 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 308 NCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp SEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred CEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999998888877553
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.8e-54 Score=444.29 Aligned_cols=357 Identities=29% Similarity=0.504 Sum_probs=314.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|+++++++.+.++|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------~~~~~~~l 80 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------VTGQVSVL 80 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-------CTTCCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-------cCCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999887532 23467899
Q ss_pred EEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEec
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDE 292 (533)
|++||++|+.|+.+.++++.... ++++..+.||.....+...+..+ ++|+|+||++|..++.+....+.++++||+||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 99999999999999999998766 68899999998877776666554 79999999999999988888899999999999
Q ss_pred chhhhhc-CcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCC-CCCcCceEEEEEecchhHHHH
Q 009494 293 VDCMLQR-GFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPN-MPNKAVKQLAIWVESNKKKQK 369 (533)
Q Consensus 293 ah~~~~~-~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~v~~~~~~~~~~~k~~~ 369 (533)
||++.++ ++...+..++...+ ..+++++|||+++....+...++.++..+...... .....+.+.+.......+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 9999874 67888888888774 78999999999999999998888888777665443 334566777777777888888
Q ss_pred HHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 009494 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 449 (533)
Q Consensus 370 l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~ 449 (533)
+.+++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 241 l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 241 LFDLLDVL--EFNQVVIFVKSVQRCIALAQLLV-EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHS--CCSEEEEECSCHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcc
Confidence 88888764 45789999999999999999998 7789999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc-CHHHHHHHHHHH
Q 009494 450 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDIL 501 (533)
Q Consensus 450 ~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l 501 (533)
++++||++++|+|...|+||+||+||.|+.|.+++|+++. +...+..+.+.+
T Consensus 318 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 318 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred cCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876 445555555544
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.9e-53 Score=438.19 Aligned_cols=356 Identities=28% Similarity=0.507 Sum_probs=306.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCC
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 210 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 210 (533)
...+|+++++++.+.+++.+.||..|+|+|.++++.++.+ ++++++||||+|||++|++|++..+.. ...+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------~~~~ 75 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-------EDAS 75 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------TCCS
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-------CCCC
Confidence 4578999999999999999999999999999999999988 999999999999999999999987643 2356
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEE
Q 009494 211 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVv 290 (533)
+++||++||++|+.|+++.++++....++.+...+++...... ..+++|+|+||++|.+.+.+....+.++++||+
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 7899999999999999999999988888888888877544331 246899999999999999988888999999999
Q ss_pred ecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchh-HH
Q 009494 291 DEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 367 (533)
Q Consensus 291 DEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~-k~ 367 (533)
||||++.+ .++...+..+...+ +..+++++|||+++.+..+...+..++..+...........+.+.+....... +.
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHH
T ss_pred EChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHH
Confidence 99999988 67888888888877 56899999999999999999999988887777666666666777766665444 44
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+..++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 232 ~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 232 DVLTELYGLM--TIGSSIIFVATKKTANVLYGKLK-SEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 4444444332 35789999999999999999998 77899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC------CHhHHHHhhccccCCCCccEEEEEecCcC-HHHHHHHHHHHH
Q 009494 448 LLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILK 502 (533)
Q Consensus 448 i~~v~~VI~~d~p~------s~~~y~qriGR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 502 (533)
+|++++||++|+|+ |...|+||+||+||.|+.|.+++|+++.+ ...+..+.+.+.
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999 99999999999999999999999998754 444555544443
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.9e-54 Score=463.83 Aligned_cols=357 Identities=24% Similarity=0.434 Sum_probs=300.2
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
|++.+++++...||..|+|+|.++++.++ .++++++.||||+|||++|++|++..+..... ....++++||++||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---DSQYMVKAVIVAPT 104 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---SSTTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc---cccCCCeEEEEcch
Confidence 99999999999999999999999999999 78899999999999999999999998876432 12346789999999
Q ss_pred HHHHHHHHHHHHHHcC----CCCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcC-CCCCCCeeEEEEecc
Q 009494 220 RELCIQVEEQAKLLGK----GLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEV 293 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVvDEa 293 (533)
++|+.|+.+.++++.. ...+.+..++||.....+...+.. +++|+|+||++|.+++.+. ...+..+++||+|||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEECh
Confidence 9999999999998753 234678889999988888777754 7999999999999988764 446788999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC----CCCCcCceEEEEEe
Q 009494 294 DCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP----NMPNKAVKQLAIWV 361 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~----~~~~~~v~~~~~~~ 361 (533)
|++++++|...+..++..+ ...|+++||||+++.+..+...++..+..+..... ......+.+.....
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 9999999999999988776 26799999999999999999999887665544322 22233445555544
Q ss_pred cch-hHHHHHHHHHhh---ccCCCCCeEEEEcchhhHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhcCCCcE
Q 009494 362 ESN-KKKQKLFDILMS---KQHFTPPAVVYVGSRLGADLLSNAISVTT--GMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 362 ~~~-~k~~~l~~~l~~---~~~~~~~~LVf~~s~~~a~~l~~~L~~~~--~~~~~~~h~~~~~~er~~~~~~f~~g~~~V 435 (533)
... .+...++..+.. ....+.++||||+++..++.++..|.+.. ++.+..+||++++.+|..+++.|++|+.+|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 432 223233332222 12346789999999999999999998432 889999999999999999999999999999
Q ss_pred EEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHH
Q 009494 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 501 (533)
||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.|++|+.+.+..+++.+.+..
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988888887664
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-53 Score=441.59 Aligned_cols=362 Identities=29% Similarity=0.497 Sum_probs=310.8
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCC
Q 009494 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
.+.++.+|+++++++.++++|.+.||..|+|+|.++++.++.+ ++++++||||+|||++|++|++..+.. .
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------~ 92 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------A 92 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------T
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-------c
Confidence 3456788999999999999999999999999999999999987 999999999999999999999987643 2
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc-CCCCCCCe
Q 009494 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDI 285 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~-~~~~l~~~ 285 (533)
..++++||++||++|+.|+.+.++++.... ++.+....++....... ..+++|+|+||++|.+++.+ ..+.+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 456789999999999999999999997764 56777777776544321 34579999999999998866 55678899
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecc
Q 009494 286 RMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES 363 (533)
Q Consensus 286 ~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~ 363 (533)
++||+||||++.+ .++...+..+...+ ...|++++|||+++.+..+...++.++..+...........+.+.+.....
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 249 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC
Confidence 9999999999987 67888888888877 567999999999999999999999999888877766666777777766655
Q ss_pred h-hHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 364 N-KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 364 ~-~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
. .+...+..++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 250 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 326 (412)
T 3fht_A 250 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELS-KEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 326 (412)
T ss_dssp HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcc
Confidence 3 4555566666543 34689999999999999999998 778999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCC------CCHhHHHHhhccccCCCCccEEEEEecCcC-HHHHHHHHHHHHHc
Q 009494 443 GRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILKSS 504 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~d~p------~s~~~y~qriGR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~ 504 (533)
++|+|+|++++||++|+| .+...|+||+||+||.|+.|.+++|+++.+ ...+..+.+.+...
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 999999999999999999 577899999999999999999999998764 66777777766543
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2e-55 Score=453.09 Aligned_cols=366 Identities=29% Similarity=0.537 Sum_probs=187.8
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCC
Q 009494 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
...+..+|+++++++.+.+.+...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-------~~~ 88 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------SVK 88 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------TCC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------cCC
Confidence 4456678999999999999999999999999999999999999999999999999999999999987643 235
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEE
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 289 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vV 289 (533)
++++||++|+++|+.|+.+.++++....++++..+.|+.........+. +++|+|+||++|.+.+.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 6789999999999999999999998888899999999988776655554 589999999999999998888889999999
Q ss_pred EecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchh-HH
Q 009494 290 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 367 (533)
Q Consensus 290 vDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~-k~ 367 (533)
+||||++.+++|...+..++..+ +..+++++|||+++.+..+...++..+..+...........+.+.+..+.... +.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999999999999999999888 56899999999999998888888888887777665555555555555544443 44
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+.+++... ..+++||||+++.+++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 248 ~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 324 (394)
T 1fuu_A 248 ECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHH-HcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCC
Confidence 4454554332 35689999999999999999998 67889999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCC
Q 009494 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 506 (533)
Q Consensus 448 i~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 506 (533)
+|++++||++++|.+...|+||+||+||.|+.|.+++|+++++...+..+.+.+...-.
T Consensus 325 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 325 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999998888888777665433
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-53 Score=460.49 Aligned_cols=358 Identities=24% Similarity=0.433 Sum_probs=298.8
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++.+++.+.+.||..|+|+|.++++.++ .+++++++||||||||++|++|++.++...... ...++++|||+||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~lil~Pt 155 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKAVIVAPT 155 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc---ccCCeeEEEEcCc
Confidence 99999999999999999999999999999 678999999999999999999999988764321 2345789999999
Q ss_pred HHHHHHHHHHHHHHcCC----CCCeEEEEEcCcchHHHHHHHH-cCCceeecCHHHHHHHHHcC-CCCCCCeeEEEEecc
Q 009494 220 RELCIQVEEQAKLLGKG----LPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEV 293 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVvDEa 293 (533)
++|+.|+++.++++... ....+..++||.....+...+. .+++|+|+||++|.+++.+. ...++++++||+|||
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 99999999999987432 2467888999998888777764 47999999999999988764 345788999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC----CCCCcCceEEEEEe
Q 009494 294 DCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP----NMPNKAVKQLAIWV 361 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~----~~~~~~v~~~~~~~ 361 (533)
|++++++|...+..++..+ +..|++++|||+++.+..++..++..+..+..... ......+.+.....
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 9999999999999988765 36789999999999999999998887655544322 22233444555444
Q ss_pred cch-hHHHHHHHHHhh---ccCCCCCeEEEEcchhhHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcE
Q 009494 362 ESN-KKKQKLFDILMS---KQHFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 362 ~~~-~k~~~l~~~l~~---~~~~~~~~LVf~~s~~~a~~l~~~L~~~--~~~~~~~~h~~~~~~er~~~~~~f~~g~~~V 435 (533)
... .+...++..+.. ....+.++||||+++..++.++..|... .++.+..+||++++.+|..+++.|++|+.+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 432 222222322221 1244678999999999999999999833 2889999999999999999999999999999
Q ss_pred EEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009494 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 502 (533)
||||+++++|+|+|++++||++|+|.++..|+||+||+||.|+.|.|++|+.+.+...++.+.+...
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999888888876653
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2e-54 Score=457.48 Aligned_cols=368 Identities=29% Similarity=0.503 Sum_probs=179.6
Q ss_pred ceeecCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHH
Q 009494 123 INVKGDAVPAP---ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 123 i~~~~~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
+.+.+...+.| +.+|++++|++.++++|.++||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34555555544 568999999999999999999999999999999999987 8999999999999999999998765
Q ss_pred hhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHH
Q 009494 198 ANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM 276 (533)
Q Consensus 198 ~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~ 276 (533)
.. ...++++||++||++|+.|+++.++++.... ++.+....++...... ...+++|+|+||++|.+++.
T Consensus 157 ~~-------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 157 EP-------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp CT-------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred hh-------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHH
Confidence 43 2346689999999999999999999987754 4677777776654331 13357899999999999986
Q ss_pred c-CCCCCCCeeEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcC
Q 009494 277 K-HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKA 353 (533)
Q Consensus 277 ~-~~~~l~~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 353 (533)
+ ..+.+.++++||+||||++.+ .++...+..+...+ ...|++++|||+++.+..++..++.++..+...........
T Consensus 227 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 306 (479)
T ss_dssp TSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------
T ss_pred hcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCC
Confidence 6 456789999999999999987 57888888888777 56899999999999999999999999998888777666666
Q ss_pred ceEEEEEecc-hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCC
Q 009494 354 VKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 354 v~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~ 432 (533)
+.+.+..+.. ..+...+..++... ...++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~-~~~~~v~~lh~~~~~~~R~~~~~~f~~g~ 383 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELS-KEGHQVALLSGEMMVEQRAAVIERFREGK 383 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHH-hCCccEEEecCCCCHHHHHHHHHHHHcCC
Confidence 6666665554 33444555555432 34689999999999999999998 77899999999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCccEEEEcCCCC------CHhHHHHhhccccCCCCccEEEEEecCcC-HHHHHHHHHHHHH
Q 009494 433 VPVIVATGILGRGVELLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILKS 503 (533)
Q Consensus 433 ~~VLvaT~~~~~Gldi~~v~~VI~~d~p~------s~~~y~qriGR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~ 503 (533)
.+|||||+++++|+|+|++++||+||+|. +...|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+..
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 99999999999999999999999999994 67899999999999999999999998765 5666666555543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-51 Score=414.31 Aligned_cols=335 Identities=30% Similarity=0.500 Sum_probs=288.3
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
|++.+.+.|+++||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. ++++||++|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------cCCEEEEeCCHH
Confidence 5789999999999999999999999999999999999999999999999998753 456999999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCc
Q 009494 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF 301 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~ 301 (533)
|+.|+.+.++++....+.++..++|+.....+...+. +++|+|+||++|.+.+......+.++++||+||||++.++++
T Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc
Confidence 9999999999998888899999999988877666654 489999999999999888877889999999999999999999
Q ss_pred HHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCC
Q 009494 302 RDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHF 380 (533)
Q Consensus 302 ~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~ 380 (533)
...+..++...+ ..+++++|||+++........++.++..+... .....+.+.+..+....+ .....+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~ 219 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRE--NK 219 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHT--CC
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHHHHh--CC
Confidence 999999988884 56788899999999988888888877665432 233444555555544332 22344433 44
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP 460 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p 460 (533)
++++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 6789999999999999998886 47789999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 461 NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 461 ~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+|...|+||+||+||.|+.|.+++|+. .+...++.+.+.++.
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999999 888888888877654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-50 Score=434.46 Aligned_cols=361 Identities=18% Similarity=0.268 Sum_probs=286.8
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEE
Q 009494 138 SSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 138 ~~~~l~~~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
.++++++.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ..+++|||
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------------~~g~~lVi 90 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------------SDGFTLVI 90 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------------SSSEEEEE
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------------cCCcEEEE
Confidence 357889999999998 5999999999999999999999999999999999999999974 14579999
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---H---HcCCceeecCHHHHH------HHHHcCCCCCCC
Q 009494 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---I---QQGVELIVGTPGRLI------DLLMKHDIELDD 284 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~~Iii~Tp~~l~------~~l~~~~~~l~~ 284 (533)
+|+++|+.|+.+.++.+ ++.+..+.|+.+....... + ..+++|+|+||++|. +.+.. ...+.+
T Consensus 91 sP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp CSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred eCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 99999999999999887 5778888888776554322 2 346899999999874 22222 345678
Q ss_pred eeEEEEecchhhhhcC--cHHHHHH---HHHhCCCCcEEEEeccCCHHHHHHHHhhCCC--eEEEEeCCCCCCCcCceEE
Q 009494 285 IRMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQL 357 (533)
Q Consensus 285 ~~~vVvDEah~~~~~~--~~~~~~~---i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~v~~~ 357 (533)
+++|||||||++.++| |++.+.. +...++..+++++|||+++.+......++.. +..+.. ....+++...
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~---~~~r~nl~~~ 242 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA---SFNRPNLYYE 242 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC---CCCCTTEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec---CCCCcccEEE
Confidence 9999999999999988 7776654 4455688999999999999887766655442 333322 1222333333
Q ss_pred EEEecc--hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcE
Q 009494 358 AIWVES--NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 358 ~~~~~~--~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~V 435 (533)
+..... ..+...+.+++... ..+.++||||+++..++.++..|. ..|+.+..+||+|++.+|..+++.|++|+++|
T Consensus 243 v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~-~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~V 320 (591)
T 2v1x_A 243 VRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQ-NLGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320 (591)
T ss_dssp EEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred EEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHH-HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 222221 23345566666433 246789999999999999999998 78999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHH--------------HHH
Q 009494 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV--------------DIL 501 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~--------------~~l 501 (533)
||||+++++|+|+|++++||+|++|.|++.|+||+|||||.|..|.|++|+++.|...+..++ .+.
T Consensus 321 lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~~~~~~l~~~~~~~ 400 (591)
T 2v1x_A 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC 400 (591)
T ss_dssp EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTSTTHHHHHHHHHHHH
T ss_pred EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988766655443 222
Q ss_pred HHcCCchhhHHhHHhcCccC
Q 009494 502 KSSGAVRLMTFCYILGREFT 521 (533)
Q Consensus 502 ~~~~~~~~~~~~~~l~~~~~ 521 (533)
+....++...+...||+.+.
T Consensus 401 ~~~~~Crr~~ll~~f~e~~~ 420 (591)
T 2v1x_A 401 QNISKCRRVLMAQHFDEVWN 420 (591)
T ss_dssp TCSSSCHHHHHHHHHTCCC-
T ss_pred hcccccHHHHHHHHcCCCCC
Confidence 32445566677777888764
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-51 Score=438.78 Aligned_cols=381 Identities=24% Similarity=0.412 Sum_probs=257.5
Q ss_pred CHHHHHHHHHhcCcee-ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchh
Q 009494 110 TIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKT 186 (533)
Q Consensus 110 ~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT 186 (533)
+.+++..+.+...+.. .....|.++..|...++++.+.+.+.+.||..|+|+|.++++.++.+ ++++++||||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT 172 (508)
T 3fho_A 93 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKT 172 (508)
T ss_dssp ----------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHH
Confidence 3444555554444432 33344666777888899999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeec
Q 009494 187 ASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVG 266 (533)
Q Consensus 187 ~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~ 266 (533)
++|++|++..+.. ...++++||++|+++|+.|+.+.+++++...++......++..... ...+++|+|+
T Consensus 173 ~~~~~~il~~l~~-------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~ 241 (508)
T 3fho_A 173 AAFALTMLSRVDA-------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIG 241 (508)
T ss_dssp HHHHHHHHHHSCT-------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEE
T ss_pred HHHHHHHHHHHHh-------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEE
Confidence 9999999987643 2346789999999999999999999998877777776666544332 2346899999
Q ss_pred CHHHHHHHHHcCCCCCCCeeEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEe
Q 009494 267 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 267 Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 344 (533)
||++|.+.+.+..+.+.++++||+||||++.+ .++...+..+...+ +..|++++|||+++.+..+...+..++..+..
T Consensus 242 T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~ 321 (508)
T 3fho_A 242 TPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRL 321 (508)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECC
T ss_pred CHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEe
Confidence 99999999998888899999999999999987 67888899998888 47899999999999999999999998888777
Q ss_pred CCCCCCCcCceEEEEEecc-hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Q 009494 345 GKPNMPNKAVKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 345 ~~~~~~~~~v~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~ 423 (533)
.........+.+.+..... ..+...+..++... ..+++||||+++.+|+.++..|. ..++.+..+||++++.+|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~-~~~~~v~~~hg~~~~~~R~~ 398 (508)
T 3fho_A 322 KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMT-ADGHTVACLTGNLEGAQRDA 398 (508)
T ss_dssp CCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHT-TTTCCCCEEC-----CTTGG
T ss_pred ccccCCcccceEEEEECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHH
Confidence 6666555666666655543 44555555555433 45789999999999999999998 67899999999999999999
Q ss_pred HHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCC------CCHhHHHHhhccccCCCCccEEEEEecC-cCHHHHHH
Q 009494 424 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNE-ENKNLFQE 496 (533)
Q Consensus 424 ~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p------~s~~~y~qriGR~gR~g~~g~~~~~~~~-~~~~~~~~ 496 (533)
+++.|++|+.+|||||+++++|+|+|++++||++|+| .|+..|+||+||+||.|+.|.+++|+.+ .+...+..
T Consensus 399 il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~ 478 (508)
T 3fho_A 399 IMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNA 478 (508)
T ss_dssp GTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHH
T ss_pred HHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHH
Confidence 9999999999999999999999999999999999999 7899999999999999999999999984 45566666
Q ss_pred HHHHHHHc
Q 009494 497 LVDILKSS 504 (533)
Q Consensus 497 l~~~l~~~ 504 (533)
+.+.+...
T Consensus 479 i~~~~~~~ 486 (508)
T 3fho_A 479 IQEYFQRP 486 (508)
T ss_dssp HHHHSCCC
T ss_pred HHHHHCCC
Confidence 66655443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.1e-50 Score=424.01 Aligned_cols=341 Identities=20% Similarity=0.318 Sum_probs=277.7
Q ss_pred ccCcccCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 134 ILSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
+.+|+++++++.+.+.|++ +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. .+.
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------------~g~ 67 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------------NGL 67 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-------------SSE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-------------CCC
Confidence 3579999999999999998 79999999999999999999999999999999999999998742 356
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHH---HHH-HcCCceeecCHHHHHHHHHcCCCCCCCeeEE
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV---YRI-QQGVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~v 288 (533)
+||++|+++|+.|+.+.++.+ ++.+..+.++.+..... ..+ ...++|+++||++|........+...++++|
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred EEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 999999999999999988875 56777787776654432 222 3458999999999953222222345789999
Q ss_pred EEecchhhhhcC--cHHHHHH---HHHhCCCCcEEEEeccCCHHHHH-HHHhhC-CCeEEEEeCCCCCCCcCceEEEEEe
Q 009494 289 VLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEK-MSSSIS-KDIVVVSVGKPNMPNKAVKQLAIWV 361 (533)
Q Consensus 289 VvDEah~~~~~~--~~~~~~~---i~~~~~~~q~l~~SAT~~~~~~~-l~~~~~-~~~~~i~~~~~~~~~~~v~~~~~~~ 361 (533)
||||||++.++| |++.+.. +...++..+++++|||+++.+.. +...+. .++..+.. .. ..+++. +...
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~--~r~~l~--~~v~ 218 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SF--DRPNIR--YMLM 218 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-CC--CCTTEE--EEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-CC--CCCceE--EEEE
Confidence 999999999887 6666554 45666889999999999987654 444442 34443332 21 122332 3333
Q ss_pred cchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009494 362 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 441 (533)
Q Consensus 362 ~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~ 441 (533)
....+...+.+++... .+.++||||+++..++.+++.|. ..|+.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 219 ~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a 295 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQ-SKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 (523)
T ss_dssp ECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred eCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHH-HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 4455667788887654 45789999999999999999998 77999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHH
Q 009494 442 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 499 (533)
+++|+|+|++++||++++|.|++.|+||+||+||.|..|.|++|+++.|....+.++.
T Consensus 296 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887766555543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.9e-49 Score=408.61 Aligned_cols=325 Identities=19% Similarity=0.271 Sum_probs=265.6
Q ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHH
Q 009494 145 KLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 145 ~l~~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
.+.+.+++ .|| +|+|+|.++++.++.|++++++||||||||++|++|++..+ ..++++||++||++|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~----------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH----------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh----------cCCCEEEEEECCHHHH
Confidence 34455555 366 89999999999999999999999999999999998887654 3467899999999999
Q ss_pred HHHHHHHHHHcCCCCCeEEEEEcCcch---HHHHHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh-
Q 009494 224 IQVEEQAKLLGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ- 298 (533)
Q Consensus 224 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~- 298 (533)
.|+.+.++.++. .++++..++||.+. ..+...+..+ ++|+|+||++|.+.+.. +.+.++++||+||||++.+
T Consensus 78 ~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 78 KQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 999999999988 78999999999988 5666777776 99999999999887765 5677999999999987654
Q ss_pred ----------cCcHHH-HHHHHHhC------------CCCcEEEEecc-CCHHHH-HHHHhhCCCeEEEEeCCCCCCCcC
Q 009494 299 ----------RGFRDQ-VMQIFRAI------------SLPQILMYSAT-ISQEVE-KMSSSISKDIVVVSVGKPNMPNKA 353 (533)
Q Consensus 299 ----------~~~~~~-~~~i~~~~------------~~~q~l~~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~ 353 (533)
++|... +..++..+ +..|++++||| .|..+. .+...+.. +.+.........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 677777 77777765 67899999999 565433 22222222 223333344455
Q ss_pred ceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEE-EEeCCCCHHHHHHHHHHHhcCC
Q 009494 354 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SIHGEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 354 v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~-~~h~~~~~~er~~~~~~f~~g~ 432 (533)
+.+.+... .+...+.+++... ++++||||+++..|+.++..|. ..++.+. .+||+ +|. ++.|++|+
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~h~~----~r~--~~~f~~g~ 297 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLK-RFKFNVGETWSEF----EKN--FEDFKVGK 297 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHH-HTTCCEEESSSCH----HHH--HHHHHTTS
T ss_pred chheeecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHH-HcCCceehhhcCc----chH--HHHHhCCC
Confidence 55555544 3556667777662 4789999999999999999998 7789998 88984 444 99999999
Q ss_pred CcEEEE----cccccccCCCCC-ccEEEEcCCC--CCHhHHHHhhccccCCC----CccEEEEEecCcCHHHHHHHHHHH
Q 009494 433 VPVIVA----TGILGRGVELLG-VRQVIIFDMP--NSIKEYVHQIGRASQMG----DEGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 433 ~~VLva----T~~~~~Gldi~~-v~~VI~~d~p--~s~~~y~qriGR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~l 501 (533)
++|||| |+++++|+|+|+ +++||+||+| .+...|+||+||+||.| ..|.+++|+ .+...+..+.+.+
T Consensus 298 ~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 298 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 999999 999999999999 9999999999 99999999999999998 479999999 6777888888887
Q ss_pred H
Q 009494 502 K 502 (533)
Q Consensus 502 ~ 502 (533)
.
T Consensus 376 ~ 376 (414)
T 3oiy_A 376 L 376 (414)
T ss_dssp H
T ss_pred c
Confidence 7
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-46 Score=414.00 Aligned_cols=334 Identities=24% Similarity=0.253 Sum_probs=268.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
..+|+++++++.+.+.+++.||..|+|+|.++++. +..+++++++||||||||++|.++++..+.. .+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~ 77 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------NGGK 77 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SCSE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------CCCe
Confidence 35799999999999999999999999999999999 7789999999999999999999999987653 2568
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEec
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDE 292 (533)
++|++|+++|+.|+.+.++.+.. .++++...+|+...... ...+++|+|+||++|..++.+....++++++||+||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 99999999999999999865543 47888888887665442 123689999999999999988776689999999999
Q ss_pred chhhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEE------------EEE
Q 009494 293 VDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQL------------AIW 360 (533)
Q Consensus 293 ah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~------------~~~ 360 (533)
+|++.+..++..+..++.+++..+++++|||+++ ...++.++....+ ....... .+... ..+
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~r~~---~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAKRRNLLALSATISN-YKQIAKWLGAEPV--ATNWRPV---PLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT-HHHHHHHHTCEEE--ECCCCSS---CEEEEEEEECSSTTEEEEEE
T ss_pred hhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC-HHHHHHHhCCCcc--CCCCCCC---CceEEEEecCCcccceeeec
Confidence 9999988899999999988889999999999987 4677777654322 1111111 11111 111
Q ss_pred ec--------chhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcC--------------------------
Q 009494 361 VE--------SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG-------------------------- 406 (533)
Q Consensus 361 ~~--------~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~-------------------------- 406 (533)
.. .......+.+.+ ..++++||||+++.+++.++..|.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 228 KDNTTKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp TTSCEEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred CcchhhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 11 122223333333 3568999999999999999999974321
Q ss_pred ---------CeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cC-------CCCCHhHH
Q 009494 407 ---------MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-------MPNSIKEY 466 (533)
Q Consensus 407 ---------~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d-------~p~s~~~y 466 (533)
..+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 24889999999999999999999999999999999999999999999999 99 89999999
Q ss_pred HHhhccccCCCC--ccEEEEEecCcC
Q 009494 467 VHQIGRASQMGD--EGTAIVFVNEEN 490 (533)
Q Consensus 467 ~qriGR~gR~g~--~g~~~~~~~~~~ 490 (533)
.||+|||||.|. .|.|++++++.+
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999984 799999998765
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-46 Score=403.34 Aligned_cols=356 Identities=19% Similarity=0.232 Sum_probs=273.7
Q ss_pred CCCCCHHHHHHHHHhcCceee-cCCCCCcccCcccCCCCHHHHHHHH--------HcCCCCCCHHHHHHHHHHhCCCcEE
Q 009494 106 FQSLTIGQTDSLRKRLEINVK-GDAVPAPILSFSSCSLSQKLLQNIE--------AAGYDMPTPVQMQAIPSALSGKSLL 176 (533)
Q Consensus 106 ~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~f~~~~l~~~l~~~l~--------~~g~~~p~p~Q~~~i~~~~~~~~~l 176 (533)
+..++.+++.....++...+. |.. +++.+.+++. ..|| .|+|+|..++|.++.|+ |
T Consensus 36 ~~~lsd~el~~~t~~~~~~~~~g~~------------ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--I 100 (844)
T 1tf5_A 36 YENLSDDALKHKTIEFKERLEKGAT------------TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--I 100 (844)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--E
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--E
Confidence 778898888665555443332 221 2222333332 4799 99999999999999998 9
Q ss_pred EEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH
Q 009494 177 VSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR 256 (533)
Q Consensus 177 v~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 256 (533)
+.|+||+|||++|.+|++...+ .++.++||+||++||.|..+++..+...+++++.+++||.+... ..
T Consensus 101 aea~TGeGKTlaf~LP~~l~aL----------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~--r~ 168 (844)
T 1tf5_A 101 AEMKTGEGKTLTSTLPVYLNAL----------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDE--KR 168 (844)
T ss_dssp EECCTTSCHHHHHHHHHHHHHT----------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHH--HH
T ss_pred EEccCCcHHHHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH--HH
Confidence 9999999999999999986543 25679999999999999999999999999999999999987654 34
Q ss_pred HHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhh-hcC---------------cHHHHHHHHHhCC
Q 009494 257 IQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-QRG---------------FRDQVMQIFRAIS 313 (533)
Q Consensus 257 l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~-~~~---------------~~~~~~~i~~~~~ 313 (533)
...+++|+|+||++| .+++..+ .+.++.+.++|+||||+|+ +++ |...+..|+..++
T Consensus 169 ~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~ 248 (844)
T 1tf5_A 169 EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLK 248 (844)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCC
T ss_pred HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCc
Confidence 445799999999999 7777654 3567899999999999998 664 6788899998885
Q ss_pred ----------CCcEE-----------------EEeccCCHHHHHH-----HHhhCC---CeEEE-----EeC--------
Q 009494 314 ----------LPQIL-----------------MYSATISQEVEKM-----SSSISK---DIVVV-----SVG-------- 345 (533)
Q Consensus 314 ----------~~q~l-----------------~~SAT~~~~~~~l-----~~~~~~---~~~~i-----~~~-------- 345 (533)
.+|++ ++|||.+.....+ +..++. ++++. .+.
T Consensus 249 ~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~ 328 (844)
T 1tf5_A 249 AEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMK 328 (844)
T ss_dssp SSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCT
T ss_pred ccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccC
Confidence 46776 8899977433222 222221 11110 000
Q ss_pred -------------------------------------------------------------------CCCCCCcCce-EE
Q 009494 346 -------------------------------------------------------------------KPNMPNKAVK-QL 357 (533)
Q Consensus 346 -------------------------------------------------------------------~~~~~~~~v~-~~ 357 (533)
..+.+..... ..
T Consensus 329 grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d 408 (844)
T 1tf5_A 329 GRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPD 408 (844)
T ss_dssp TCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCC
T ss_pred CCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCc
Confidence 0000000011 12
Q ss_pred EEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEE
Q 009494 358 AIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 358 ~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLv 437 (533)
..+.....|...+...+......+.|+||||+|+..++.|+..|. ..|+++..+||++.+.+|..+.+.|+.| .|+|
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~-~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlI 485 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLK-NKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTI 485 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHH-TTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEE
Confidence 344566677778888776544446789999999999999999998 8899999999999988888777666666 5999
Q ss_pred EcccccccCCCC--------CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 438 ATGILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 438 aT~~~~~Gldi~--------~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
||++++||+||+ ++.+||+|+.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 486 ATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 486 ATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred eCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999 788999999999999999999999999999999999987763
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.6e-46 Score=401.58 Aligned_cols=331 Identities=16% Similarity=0.253 Sum_probs=205.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+..+|+|+|.++++.++.++++++++|||||||++|++|++..+...+ ...++++||++||++|+.||.+.++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999998876421 123778999999999999999999999
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC-CCCCeeEEEEecchhhhhcCcHHHHH-HHHHh
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQVM-QIFRA 311 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~~~~~~~~~~~~-~i~~~ 311 (533)
+...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++.++++...+. ..+..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88778999999999877776677777899999999999999988877 78999999999999999877543332 22222
Q ss_pred -----CCCCcEEEEeccCCH-----------HHHHHHHhhCCCeEEEEeCCC-----CCCCcCceEEEE-----------
Q 009494 312 -----ISLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLAI----------- 359 (533)
Q Consensus 312 -----~~~~q~l~~SAT~~~-----------~~~~l~~~~~~~~~~i~~~~~-----~~~~~~v~~~~~----------- 359 (533)
.+.++++++|||++. .+..+...+....+....... ....+.......
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 256899999999852 222233333222111100000 000000000000
Q ss_pred ------------------------------------Ee------------------------------------------
Q 009494 360 ------------------------------------WV------------------------------------------ 361 (533)
Q Consensus 360 ------------------------------------~~------------------------------------------ 361 (533)
|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred --------------------------------------------------cchhHHHHHHHHHhhcc--CCCCCeEEEEc
Q 009494 362 --------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVG 389 (533)
Q Consensus 362 --------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~LVf~~ 389 (533)
....|...|.+++.... ..+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 01234445555555432 45679999999
Q ss_pred chhhHHHHHHHHHhh-----------cCCeEEEEeCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEc
Q 009494 390 SRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIF 457 (533)
Q Consensus 390 s~~~a~~l~~~L~~~-----------~~~~~~~~h~~~~~~er~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~ 457 (533)
++..++.+++.|... .|.....+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999733 25556677889999999999999999 999999999999999999999999999
Q ss_pred CCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 458 DMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 458 d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
|+|+|+..|+||+|| ||. ..|.+++|+++.+.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999 998 78999999987654
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-46 Score=415.14 Aligned_cols=333 Identities=19% Similarity=0.273 Sum_probs=270.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
+|+++++++.+.+.++..||..|+|+|.++++. +..+++++++||||||||++|.+|++..+.. .+.+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---------QGGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------HCSEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCCEEE
Confidence 588999999999999999999999999999998 7899999999999999999999999988763 157899
Q ss_pred EEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++|+++|+.|+++.++++.. .++++..++|+...... ...+++|+|+||++|..++.+....++++++||+||+|
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 999999999999999976544 47888888887654432 13468999999999999988877668999999999999
Q ss_pred hhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEE------Eec-----
Q 009494 295 CMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI------WVE----- 362 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~------~~~----- 362 (533)
++.++.++..+..++.++. ..|++++|||+++ ...+..++....+ ..... +..+...+. +..
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~r---p~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAELI--VSDWR---PVKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEEE--ECCCC---SSEEEEEEEETTEEEETTSCEEE
T ss_pred ccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCccc--CCCCC---CCcceEEEEeCCeeeccccchhh
Confidence 9998888999999988875 7899999999987 5667776643221 11111 111111111 111
Q ss_pred chhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc--------------------------------CCeEE
Q 009494 363 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--------------------------------GMKAL 410 (533)
Q Consensus 363 ~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~--------------------------------~~~~~ 410 (533)
.......+.+.+ ..++++||||+++..++.++..|.+.. ...+.
T Consensus 223 ~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 223 FSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp CSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 122233333333 346799999999999999999987321 12488
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cC----CCCCHhHHHHhhccccCCC--Ccc
Q 009494 411 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD----MPNSIKEYVHQIGRASQMG--DEG 480 (533)
Q Consensus 411 ~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d----~p~s~~~y~qriGR~gR~g--~~g 480 (533)
.+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| ..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 77 5899999999999999998 479
Q ss_pred EEEEEecCcCH
Q 009494 481 TAIVFVNEENK 491 (533)
Q Consensus 481 ~~~~~~~~~~~ 491 (533)
.|++++++.+.
T Consensus 379 ~~~~l~~~~~~ 389 (720)
T 2zj8_A 379 EGIIVSTSDDP 389 (720)
T ss_dssp EEEEECSSSCH
T ss_pred eEEEEecCccH
Confidence 99999988773
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.2e-46 Score=398.09 Aligned_cols=332 Identities=15% Similarity=0.239 Sum_probs=232.7
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
+|+|+|.++++.++.++++++++|||+|||++|++|++..+.... ...++++||++||++|+.||.+.+++++..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999998876521 133778999999999999999999999988
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC-CCCCeeEEEEecchhhhhcCc-HHHHHHHHHhC--
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI-- 312 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~~~~~~~-~~~~~~i~~~~-- 312 (533)
.++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++.+.+. ...+...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 88999999999987776667777899999999999999988777 788999999999999987753 22222333332
Q ss_pred ----CCCcEEEEeccCCH-----------HHHHHHHhhCCCeEEEEeCC-----CCCCCcCceEEEEE------------
Q 009494 313 ----SLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGK-----PNMPNKAVKQLAIW------------ 360 (533)
Q Consensus 313 ----~~~q~l~~SAT~~~-----------~~~~l~~~~~~~~~~i~~~~-----~~~~~~~v~~~~~~------------ 360 (533)
+.++++++|||++. .+..+...+....+...... .....+........
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 55799999999953 12223333322222111000 00000000000000
Q ss_pred ------------------------------------e-------------------------------------------
Q 009494 361 ------------------------------------V------------------------------------------- 361 (533)
Q Consensus 361 ------------------------------------~------------------------------------------- 361 (533)
+
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0
Q ss_pred -------------------------------------------------cchhHHHHHHHHHhhcc--CCCCCeEEEEcc
Q 009494 362 -------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVGS 390 (533)
Q Consensus 362 -------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~LVf~~s 390 (533)
....|...+.+++.... ....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 01234445555554432 345799999999
Q ss_pred hhhHHHHHHHHHhhc-----------CCeEEEEeCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEEEcC
Q 009494 391 RLGADLLSNAISVTT-----------GMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIFD 458 (533)
Q Consensus 391 ~~~a~~l~~~L~~~~-----------~~~~~~~h~~~~~~er~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~d 458 (533)
+.+++.++..|.... |.....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998331 3445566779999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHH
Q 009494 459 MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQ 495 (533)
Q Consensus 459 ~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~ 495 (533)
+|+|+..|+||+|| ||. ..|.+++|+++.+.....
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 99999999999999 998 899999999987655443
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-46 Score=416.10 Aligned_cols=332 Identities=20% Similarity=0.255 Sum_probs=266.2
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 136 SFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 136 ~f~~~~--l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+|++++ +++.+.+.+++.||..|+|+|.++++.+..+++++++||||||||++|.+|++..+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCcE
Confidence 577788 9999999999999999999999999999999999999999999999999999987643 4679
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
+|++|+++|+.|+.+.++++. ..++++...+|+...... ...+++|+|+||++|..++.+....++++++||+||+
T Consensus 72 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred EEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 999999999999999986554 347888888887665442 1236899999999999999887766899999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC----CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEE------EEecc
Q 009494 294 DCMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA------IWVES 363 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~------~~~~~ 363 (533)
|++.+++++..+..++..+ +..|++++|||+++ ...++.++..+.+ ....... .+...+ .+...
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~r~~---~l~~~~~~~~~~~~~~~ 221 (702)
T 2p6r_A 148 HLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADYY--VSDWRPV---PLVEGVLCEGTLELFDG 221 (702)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEEE--ECCCCSS---CEEEEEECSSEEEEEET
T ss_pred eecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCcc--cCCCCCc---cceEEEeeCCeeeccCc
Confidence 9999888888888887766 67999999999997 6777777654322 1111111 111111 11111
Q ss_pred hh-------HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc-----------------------------CC
Q 009494 364 NK-------KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----------------------------GM 407 (533)
Q Consensus 364 ~~-------k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~-----------------------------~~ 407 (533)
.. ....+.+.+ ..++++||||+++..++.++..|.... +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 222 AFSTSRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TEEEEEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred chhhhhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 11 333333333 346799999999999999999887321 13
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cC---CCCCHhHHHHhhccccCCC--C
Q 009494 408 KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD---MPNSIKEYVHQIGRASQMG--D 478 (533)
Q Consensus 408 ~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d---~p~s~~~y~qriGR~gR~g--~ 478 (533)
.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 4778999999999999999999999999999999999999999999999 66 7899999999999999998 4
Q ss_pred ccEEEEEecCcCH
Q 009494 479 EGTAIVFVNEENK 491 (533)
Q Consensus 479 ~g~~~~~~~~~~~ 491 (533)
.|.|++++++.+.
T Consensus 378 ~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 378 RGEAIIIVGKRDR 390 (702)
T ss_dssp CEEEEEECCGGGH
T ss_pred CceEEEEecCccH
Confidence 7999999988763
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.1e-46 Score=411.94 Aligned_cols=340 Identities=16% Similarity=0.202 Sum_probs=223.2
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 147 LQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 147 ~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..++..+||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+ .+.++++||++||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----TTCCCCEEEECSSHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----cCCCCeEEEEECCHHHHHHH
Confidence 3466778999999999999999999999999999999999999999998775421 12347899999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC-CCCCeeEEEEecchhhhhcCcHHHH
Q 009494 227 EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQV 305 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~~~~~~~~~~~ 305 (533)
.+.+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+......+
T Consensus 78 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 78 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 999999998888999999999876666666777899999999999999988776 7899999999999998865522222
Q ss_pred -HHHHHh------CCCCcEEEEeccCC--------HHHHHHHHhh---------------------CCCeEEEEeCCCCC
Q 009494 306 -MQIFRA------ISLPQILMYSATIS--------QEVEKMSSSI---------------------SKDIVVVSVGKPNM 349 (533)
Q Consensus 306 -~~i~~~------~~~~q~l~~SAT~~--------~~~~~l~~~~---------------------~~~~~~i~~~~~~~ 349 (533)
...+.. -+.++++++|||+. .....+.... ...+..........
T Consensus 158 ~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 158 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 222222 15689999999986 1122221111 11111110000000
Q ss_pred CC------------------------------------------------------------------------------
Q 009494 350 PN------------------------------------------------------------------------------ 351 (533)
Q Consensus 350 ~~------------------------------------------------------------------------------ 351 (533)
..
T Consensus 238 ~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 238 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 317 (696)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ---------------------------------cCceEEEEE-------------e---cchhHHHHHHHHHhhcc--CC
Q 009494 352 ---------------------------------KAVKQLAIW-------------V---ESNKKKQKLFDILMSKQ--HF 380 (533)
Q Consensus 352 ---------------------------------~~v~~~~~~-------------~---~~~~k~~~l~~~l~~~~--~~ 380 (533)
..+.+.+.. . ....|...|.+++.... ..
T Consensus 318 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 397 (696)
T 2ykg_A 318 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 397 (696)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCC
Confidence 000000000 0 12345556666665542 34
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhcC----CeEEEE--------eCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTTG----MKALSI--------HGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVE 447 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~~----~~~~~~--------h~~~~~~er~~~~~~f~~-g~~~VLvaT~~~~~Gld 447 (533)
+.++||||+++..++.+++.|. ..+ +.+..+ ||+|++.+|..+++.|++ |+++|||||+++++|||
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 476 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHH-HCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC--
T ss_pred CCcEEEEeCcHHHHHHHHHHHH-hCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCc
Confidence 5789999999999999999998 555 777777 569999999999999998 99999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHH
Q 009494 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF 494 (533)
Q Consensus 448 i~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~ 494 (533)
+|++++||+||+|+|+..|+||+|| ||. +.|.++++++..+....
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred CccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 9999999999999999999999999 998 78999999987765433
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=416.90 Aligned_cols=328 Identities=18% Similarity=0.169 Sum_probs=257.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
.|...++++.+...+...++..|+|+|.++++.+..|++++++||||||||++|++|++..+. .++++||
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~----------~g~rvlv 232 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIY 232 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH----------TTCEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEE
Confidence 566677777776667666777899999999999999999999999999999999999998763 3678999
Q ss_pred EcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh
Q 009494 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 295 (533)
++||++|+.|+++.++.++. .+..+.|+.... .+++|+|+||++|.+++.+....+.++++|||||||+
T Consensus 233 l~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred EcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 99999999999999998765 466677766532 4589999999999999998887789999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHH--HHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEE---------ecc
Q 009494 296 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQE--VEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW---------VES 363 (533)
Q Consensus 296 ~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~---------~~~ 363 (533)
+.+++|+..+..++..+ +..|+++||||+|+. +..+.......+..+...... ...+..++.. +..
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEET
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeecc
Confidence 99999999999999888 568999999999874 334444445444333322211 1111221111 000
Q ss_pred ----------------------------------------------hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHH
Q 009494 364 ----------------------------------------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLL 397 (533)
Q Consensus 364 ----------------------------------------------~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l 397 (533)
..+...++..+.. ....++||||+++..|+.+
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHH
Confidence 1112223333332 2346899999999999999
Q ss_pred HHHHHhhcCCe---------------------------------------EEEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009494 398 SNAISVTTGMK---------------------------------------ALSIHGEKPMKERREIMRSFLVGEVPVIVA 438 (533)
Q Consensus 398 ~~~L~~~~~~~---------------------------------------~~~~h~~~~~~er~~~~~~f~~g~~~VLva 438 (533)
+..|. ..++. +..+||+|++.+|..+++.|++|.++||||
T Consensus 458 a~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 458 ALKMS-KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHTC-SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 99986 22221 788999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEcCC--------CCCHhHHHHhhccccCCC--CccEEEEEecCc
Q 009494 439 TGILGRGVELLGVRQVIIFDM--------PNSIKEYVHQIGRASQMG--DEGTAIVFVNEE 489 (533)
Q Consensus 439 T~~~~~Gldi~~v~~VI~~d~--------p~s~~~y~qriGR~gR~g--~~g~~~~~~~~~ 489 (533)
|+++++|+|+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++.
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999999998765 347788999999999999 679999999876
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.6e-45 Score=406.11 Aligned_cols=333 Identities=15% Similarity=0.248 Sum_probs=213.0
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+..|+|+|.++++.++.|+++++++|||||||++|++|++..+...+ ...++++||++||++|+.|+.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999998876521 1337789999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC-CCCCeeEEEEecchhhhhcCcHHHH-HHHH
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQV-MQIF 309 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~~~~~~~~~~~-~~i~ 309 (533)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+....+ ...+
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 9988778999999999987777777778899999999999999988777 7889999999999999876543332 2333
Q ss_pred Hh-----CCCCcEEEEeccCC-----------HHHHHHHHhhCCCeEEEEeCCC-----CCCCcCceEEEE---------
Q 009494 310 RA-----ISLPQILMYSATIS-----------QEVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLAI--------- 359 (533)
Q Consensus 310 ~~-----~~~~q~l~~SAT~~-----------~~~~~l~~~~~~~~~~i~~~~~-----~~~~~~v~~~~~--------- 359 (533)
.. .+.++++++|||++ +.+..+...+....+....... ....+.......
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 22 35689999999985 2233333333222211100000 000000000000
Q ss_pred --------------------------------------Ee----------------------------------------
Q 009494 360 --------------------------------------WV---------------------------------------- 361 (533)
Q Consensus 360 --------------------------------------~~---------------------------------------- 361 (533)
|+
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ----------------------------------------------------cchhHHHHHHHHHhhc--cCCCCCeEEE
Q 009494 362 ----------------------------------------------------ESNKKKQKLFDILMSK--QHFTPPAVVY 387 (533)
Q Consensus 362 ----------------------------------------------------~~~~k~~~l~~~l~~~--~~~~~~~LVf 387 (533)
....|...|.+++... ...+.++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0122444455555542 2446899999
Q ss_pred EcchhhHHHHHHHHHhh-----------cCCeEEEEeCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEE
Q 009494 388 VGSRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 388 ~~s~~~a~~l~~~L~~~-----------~~~~~~~~h~~~~~~er~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
|+++..++.++..|... .|.....+||++++.+|..+++.|++ |+++|||||+++++|||+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999742 35566778999999999999999999 9999999999999999999999999
Q ss_pred EcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 456 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 456 ~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
+||+|+|+..|+||+|| ||. ..|.+++|+++.+.
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999 998 88999999987654
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.7e-44 Score=408.87 Aligned_cols=318 Identities=19% Similarity=0.279 Sum_probs=260.7
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|| +|+|+|.++++.++.|++++++||||||||++|+++++..+ ..++++||++||++||.|+++.++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~----------~~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------RKGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH----------TTTCCEEEEESSHHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH----------hcCCeEEEEechHHHHHHHHHHHH
Confidence 3578 69999999999999999999999999999998888877654 346789999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcch---HHHHHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh----------
Q 009494 232 LLGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML---------- 297 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~---------- 297 (533)
.++ ..++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.
T Consensus 143 ~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 143 KLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp TTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred Hhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhh
Confidence 987 678999999999988 6777788876 99999999999888775 667899999999997544
Q ss_pred h-cCcHHH-HHHHHHhC------------CCCcEEEEecc-CCHHHH-HHHHhhCCCeEEEEeCCCCCCCcCceEEEEEe
Q 009494 298 Q-RGFRDQ-VMQIFRAI------------SLPQILMYSAT-ISQEVE-KMSSSISKDIVVVSVGKPNMPNKAVKQLAIWV 361 (533)
Q Consensus 298 ~-~~~~~~-~~~i~~~~------------~~~q~l~~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~ 361 (533)
+ +||... +..++..+ ...|++++||| .|..+. .+....+. +.+.........+.+.+...
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec
Confidence 4 788887 78888765 46899999999 565443 23333332 23333344455666666555
Q ss_pred cchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEE-EEeCCCCHHHHHHHHHHHhcCCCcEEEE--
Q 009494 362 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SIHGEKPMKERREIMRSFLVGEVPVIVA-- 438 (533)
Q Consensus 362 ~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~-~~h~~~~~~er~~~~~~f~~g~~~VLva-- 438 (533)
.+...+.+++... ++++||||+++..++.++..|. ..|+.+. .+|| +|++ ++.|++|+++||||
T Consensus 296 ---~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~-~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 296 ---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLK-RFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp ---CCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHH-HTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEET
T ss_pred ---CHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHH-hCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEec
Confidence 3556667777662 4789999999999999999998 7799998 9999 2555 99999999999999
Q ss_pred --cccccccCCCCC-ccEEEEcCCCC------------------------------------------------------
Q 009494 439 --TGILGRGVELLG-VRQVIIFDMPN------------------------------------------------------ 461 (533)
Q Consensus 439 --T~~~~~Gldi~~-v~~VI~~d~p~------------------------------------------------------ 461 (533)
|+++++|+|+|+ +++|||||+|.
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~ 442 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVK 442 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 999999999999 99999999998
Q ss_pred ------------------CHhHHHHhhccccCCCC----ccEEEEEecCcCHHHHHHHHHHHH
Q 009494 462 ------------------SIKEYVHQIGRASQMGD----EGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 462 ------------------s~~~y~qriGR~gR~g~----~g~~~~~~~~~~~~~~~~l~~~l~ 502 (533)
++..|+||+|||||.|. +|.+++++ +|.+.+..|.+.++
T Consensus 443 ~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 443 EMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred hccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999764 35555555 78888888888886
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-43 Score=401.01 Aligned_cols=333 Identities=16% Similarity=0.257 Sum_probs=210.8
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
-.|+..|+|+|.++++.++.|+++++++|||+|||++|++|++..+... ..+.++++||++||++|+.|+.+.++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-----~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-----PAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-----CSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-----cccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999998766441 11236789999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCC-CCCCeeEEEEecchhhhhcCcHHH-HHHHH
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQ-VMQIF 309 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~-~l~~~~~vVvDEah~~~~~~~~~~-~~~i~ 309 (533)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++...+.... +..++
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 9988778999999999877766666667799999999999999988776 788999999999999987653222 22333
Q ss_pred Hh-----CCCCcEEEEeccCC-----------HHHHHHHHhhCCCeEEE------------------E-eCCCCCCCc--
Q 009494 310 RA-----ISLPQILMYSATIS-----------QEVEKMSSSISKDIVVV------------------S-VGKPNMPNK-- 352 (533)
Q Consensus 310 ~~-----~~~~q~l~~SAT~~-----------~~~~~l~~~~~~~~~~i------------------~-~~~~~~~~~-- 352 (533)
.. .+.++++++|||+. +.+..+...+....+.. . .........
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 32 35589999999985 22223332222211110 0 000000000
Q ss_pred ---------------------CceEEE-E---------Ee----------------------------------------
Q 009494 353 ---------------------AVKQLA-I---------WV---------------------------------------- 361 (533)
Q Consensus 353 ---------------------~v~~~~-~---------~~---------------------------------------- 361 (533)
.+.... . |+
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 0 00
Q ss_pred ----------------------------------------------------cchhHHHHHHHHHhhcc--CCCCCeEEE
Q 009494 362 ----------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVVY 387 (533)
Q Consensus 362 ----------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~LVf 387 (533)
....|...|.++|.... ..+.++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 01224444555555432 446899999
Q ss_pred EcchhhHHHHHHHHHhh-----------cCCeEEEEeCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCccEEE
Q 009494 388 VGSRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 388 ~~s~~~a~~l~~~L~~~-----------~~~~~~~~h~~~~~~er~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
|+++..++.++..|... .|.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999843 15556677999999999999999999 9999999999999999999999999
Q ss_pred EcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 456 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 456 ~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
+||+|+|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 718 ~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp EESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999 998 78999999987543
No 30
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-43 Score=416.67 Aligned_cols=343 Identities=19% Similarity=0.262 Sum_probs=267.3
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
|.....+++...+|..|+|+|.++++.++ .++|++++||||||||++|.+|++..+.. ..+.++||++|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--------~~~~kavyi~P~r 982 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--------SSEGRCVYITPME 982 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--------CTTCCEEEECSCH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--------CCCCEEEEEcChH
Confidence 45567777777899999999999999997 56789999999999999999999998875 4466899999999
Q ss_pred HHHHHHHHHHH-HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC--CCCCCCeeEEEEecchhhh
Q 009494 221 ELCIQVEEQAK-LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--DIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 221 ~L~~Q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~--~~~l~~~~~vVvDEah~~~ 297 (533)
+||.|.++.++ ++....++++..++|+..... +...+++|+|||||+|..++++. ...++++++||+||+|.+.
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 99999999886 466777889988888754322 23345899999999997777653 2347899999999999888
Q ss_pred hcCcHHHHHHHHHhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHH
Q 009494 298 QRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK 369 (533)
Q Consensus 298 ~~~~~~~~~~i~~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~ 369 (533)
+. .+..++.++.++ +..|+|++|||+++ .++++.|+......+........+..+...+...........
T Consensus 1060 d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1060 GE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp ST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHH
T ss_pred CC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhh
Confidence 74 577776666544 56899999999997 678888886554322223333334445555544443332222
Q ss_pred -------HHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhh---------------------------------cCCeE
Q 009494 370 -------LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT---------------------------------TGMKA 409 (533)
Q Consensus 370 -------l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~---------------------------------~~~~~ 409 (533)
+...+.. ...++++||||+++..|+.++..|... ....+
T Consensus 1138 ~~~~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1138 LLSMAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHTTHHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 2233333 244679999999999999888766311 12347
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cC------CCCCHhHHHHhhccccCCCC-
Q 009494 410 LSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD------MPNSIKEYVHQIGRASQMGD- 478 (533)
Q Consensus 410 ~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d------~p~s~~~y~qriGR~gR~g~- 478 (533)
..+||+|++.+|..+++.|++|.++|||||+++++|+|+|...+||. || .|.++.+|.||+|||||.|.
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 89999999999999999999999999999999999999999988884 32 35689999999999999997
Q ss_pred -ccEEEEEecCcCHHHHHHHH
Q 009494 479 -EGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 479 -~g~~~~~~~~~~~~~~~~l~ 498 (533)
.|.|++++.+.+..+++.++
T Consensus 1297 ~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHHHT
T ss_pred CceEEEEEecchHHHHHHHHh
Confidence 69999999998888777664
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-44 Score=412.32 Aligned_cols=323 Identities=18% Similarity=0.287 Sum_probs=259.6
Q ss_pred HHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 148 QNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 148 ~~l~~-~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+.+.+ .||. | |+|.++++.++.|+|++++||||||||+ |++|++..+.. .++++||++||++|+.|+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------~~~~~lil~PtreLa~Q~ 115 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------KGKRCYVIFPTSLLVIQA 115 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------TSCCEEEEESCHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------cCCeEEEEeccHHHHHHH
Confidence 44443 6999 9 9999999999999999999999999998 89999887653 467899999999999999
Q ss_pred HHHHHHHcCCCCC----eEEEEEcCcchHHH---HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 227 EEQAKLLGKGLPF----KTALVVGGDAMARQ---VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 227 ~~~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
++.++.++...++ ++..++||.+...+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||+|++
T Consensus 116 ~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~- 189 (1054)
T 1gku_B 116 AETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK- 189 (1054)
T ss_dssp HHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT-
T ss_pred HHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh-
Confidence 9999999988888 89999999887663 344445 99999999999987665 67999999999999998
Q ss_pred CcHHHHHHHHHhC------------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHH
Q 009494 300 GFRDQVMQIFRAI------------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 367 (533)
Q Consensus 300 ~~~~~~~~i~~~~------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~ 367 (533)
++..+..++..+ ...|++++|||++.. ..+...++.++..+.+.........+.+.+. ...+.
T Consensus 190 -~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~ 264 (1054)
T 1gku_B 190 -ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESI 264 (1054)
T ss_dssp -STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCT
T ss_pred -ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHH
Confidence 467788887776 357899999999876 4333333333333333333334445555444 34455
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEE----ccccc
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA----TGILG 443 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLva----T~~~~ 443 (533)
..+.+++... ++++||||+++..|+.++..|. .. +.+..+||++. .+++.|++|+++|||| |++++
T Consensus 265 ~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~-~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 265 STLSSILEKL---GTGGIIYARTGEEAEEIYESLK-NK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp TTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTT-TS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------
T ss_pred HHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHh-hc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeE
Confidence 5666666543 5689999999999999999998 44 89999999983 7889999999999999 89999
Q ss_pred ccCCCCCc-cEEEEcCCC--------------------------------------------------------------
Q 009494 444 RGVELLGV-RQVIIFDMP-------------------------------------------------------------- 460 (533)
Q Consensus 444 ~Gldi~~v-~~VI~~d~p-------------------------------------------------------------- 460 (533)
+|+|+|+| ++||++|+|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999995 999999999
Q ss_pred ---------CCHhHHHHhhccccCCCCcc--EEEEEecCcCHHHHHHHHHHHHH
Q 009494 461 ---------NSIKEYVHQIGRASQMGDEG--TAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 461 ---------~s~~~y~qriGR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
.+...|+||+||+||.|..| .+++|+..++...+..+.+.+..
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48888888899999999888885
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-42 Score=366.42 Aligned_cols=322 Identities=19% Similarity=0.240 Sum_probs=249.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+. ..+.++||++|+++|+.||.++++++...
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---------~~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---------HSCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---------cCCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 6899999999999998 9999999999999999999887664 23567999999999999999999998754
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHH-HHhCCCC
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQI-FRAISLP 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i-~~~~~~~ 315 (533)
.+.++..+.|+...... .....+++|+|+||++|...+....+.+.++++||+||||++.+......+... ....+..
T Consensus 79 ~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp CGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred chhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 44578888887765543 334456899999999999999888888999999999999999865434444433 3345788
Q ss_pred cEEEEeccCCHH---HHHHHHhhCCCeEEEEeCCCCCC-----CcCceEEEEEe--------------------------
Q 009494 316 QILMYSATISQE---VEKMSSSISKDIVVVSVGKPNMP-----NKAVKQLAIWV-------------------------- 361 (533)
Q Consensus 316 q~l~~SAT~~~~---~~~l~~~~~~~~~~i~~~~~~~~-----~~~v~~~~~~~-------------------------- 361 (533)
+++++|||+.+. +..+...+............... ...........
T Consensus 158 ~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
T 1wp9_A 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG 237 (494)
T ss_dssp CEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999743 44444444433332221111000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009494 362 -------------------------------------------------------------------------------- 361 (533)
Q Consensus 362 -------------------------------------------------------------------------------- 361 (533)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 238 LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence
Q ss_pred ----------------------cchhHHHHHHHHHhhcc--CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeC---
Q 009494 362 ----------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG--- 414 (533)
Q Consensus 362 ----------------------~~~~k~~~l~~~l~~~~--~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~--- 414 (533)
....|...+.+++.... ..+.++||||+++..++.+++.|. ..++.+..+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELV-KDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH-HTTCCEEEECCSSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHH-HcCCCcEEEecccc
Confidence 12234445556665533 457899999999999999999998 66999999999
Q ss_pred -----CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 415 -----EKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 415 -----~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
+++..+|..+++.|++|..+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.|+.+.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999887
Q ss_pred CH
Q 009494 490 NK 491 (533)
Q Consensus 490 ~~ 491 (533)
..
T Consensus 476 t~ 477 (494)
T 1wp9_A 476 TR 477 (494)
T ss_dssp SH
T ss_pred CH
Confidence 53
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-43 Score=395.18 Aligned_cols=318 Identities=18% Similarity=0.188 Sum_probs=249.4
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..+|. |+|+|.++++.+..+++++++||||||||++|+++++..+. .+.++||++||++|+.|+++.++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHHHH
Confidence 34674 99999999999999999999999999999999999887653 35789999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHh
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~ 311 (533)
+++. .+..++|+.... .+++|+|+||++|.+++.+....+.++++|||||+|++.+++++..+..++..
T Consensus 151 ~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 8765 566677766543 35799999999999999888778899999999999999999989989988888
Q ss_pred C-CCCcEEEEeccCCHHHHHHHHhh---CCCeEEEEeCCCCCCCcCceEEEEEe---------cc---------------
Q 009494 312 I-SLPQILMYSATISQEVEKMSSSI---SKDIVVVSVGKPNMPNKAVKQLAIWV---------ES--------------- 363 (533)
Q Consensus 312 ~-~~~q~l~~SAT~~~~~~~l~~~~---~~~~~~i~~~~~~~~~~~v~~~~~~~---------~~--------------- 363 (533)
+ +..+++++|||+++.. .++.++ ...+..+..... ....+.+++... +.
T Consensus 220 l~~~~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp SCTTCEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred cCCCCeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 8 4689999999998743 344433 233333222211 111222222210 00
Q ss_pred -------------------------------hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCC-----
Q 009494 364 -------------------------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGM----- 407 (533)
Q Consensus 364 -------------------------------~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~----- 407 (533)
......++..+.. ....++||||+++..|+.++..|. ..++
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~-~~~~~~~~e 373 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMS-KLDFNSDDE 373 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTT-TSCCCCHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHH-hCCCCChHH
Confidence 0111123333322 123589999999999999999886 3222
Q ss_pred ----------------------------------eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE
Q 009494 408 ----------------------------------KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQ 453 (533)
Q Consensus 408 ----------------------------------~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~ 453 (533)
.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 2788999999999999999999999999999999999999999999
Q ss_pred EEE----cCC----CCCHhHHHHhhccccCCCC--ccEEEEEecCc-CHHHHHHH
Q 009494 454 VII----FDM----PNSIKEYVHQIGRASQMGD--EGTAIVFVNEE-NKNLFQEL 497 (533)
Q Consensus 454 VI~----~d~----p~s~~~y~qriGR~gR~g~--~g~~~~~~~~~-~~~~~~~l 497 (533)
||+ ||. |.|+.+|+||+|||||.|. .|.|++++++. +...+..+
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 998 8999999999999999997 59999999876 44444443
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4e-44 Score=383.83 Aligned_cols=321 Identities=18% Similarity=0.204 Sum_probs=233.8
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. +|+|+|..+++.++.|+ ++.++||+|||++|++|++...+ .++.++|++||++||.|+++++..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l----------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL----------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT----------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH----------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 464 89999999999999998 99999999999999999986543 246799999999999999999999
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCCCeeEEEEecchhhh-hcC----
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCML-QRG---- 300 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~~~~~vVvDEah~~~-~~~---- 300 (533)
+...+++++.+++||.+... ..+..+++|+|+||++| .+++..+- +.++++.++|+||||+|+ +++
T Consensus 138 l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 99999999999999987543 45556799999999999 78887652 567899999999999999 543
Q ss_pred -----------cHHHHHHHHHhCC---------------------CCcEE------------------------EEeccC
Q 009494 301 -----------FRDQVMQIFRAIS---------------------LPQIL------------------------MYSATI 324 (533)
Q Consensus 301 -----------~~~~~~~i~~~~~---------------------~~q~l------------------------~~SAT~ 324 (533)
|...+..|+..++ .+|++ ++|||.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 5667777777764 34443 789987
Q ss_pred CHHHHHH-----HHhhCC--------CeE-----------------------------EEEeCCCCCCCcCce-------
Q 009494 325 SQEVEKM-----SSSISK--------DIV-----------------------------VVSVGKPNMPNKAVK------- 355 (533)
Q Consensus 325 ~~~~~~l-----~~~~~~--------~~~-----------------------------~i~~~~~~~~~~~v~------- 355 (533)
+.....+ +..++. +.. .+.+...+.+...+.
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRL 375 (853)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhh
Confidence 6422211 111110 000 011111110011111
Q ss_pred ----------------------------------------EEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHH
Q 009494 356 ----------------------------------------QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 356 ----------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~ 395 (533)
....+.....|...+.+.+......+.|+||||+|+..++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 1124455567777888877665556779999999999999
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc------------------------
Q 009494 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV------------------------ 451 (533)
Q Consensus 396 ~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v------------------------ 451 (533)
.|+..|. ..|+++.++||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 456 ~Ls~~L~-~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 456 LVSNELT-KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHH-HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHH-HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 9999999 8899999999999988998888999988 599999999999999974
Q ss_pred -------------cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 452 -------------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 452 -------------~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999988763
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.4e-42 Score=372.22 Aligned_cols=337 Identities=18% Similarity=0.212 Sum_probs=264.5
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+ +|+|+|..+++.++.|+ |+.++||+|||++|.+|++...+. +..++|++||++||.|..+++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 4698 99999999999999998 999999999999999999865542 4569999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhh-hc----
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-QR---- 299 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~-~~---- 299 (533)
.+...+++++.+++||.+... .+...+++|+++||++| .+++..+ .+.++.+.++||||||+|+ +.
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 999999999999999987543 34445699999999999 8888765 3567899999999999998 43
Q ss_pred -----------CcHHHHHHHHHhCC----------CCcEE-----------------EEeccCCHHHHHH-----HHhhC
Q 009494 300 -----------GFRDQVMQIFRAIS----------LPQIL-----------------MYSATISQEVEKM-----SSSIS 336 (533)
Q Consensus 300 -----------~~~~~~~~i~~~~~----------~~q~l-----------------~~SAT~~~~~~~l-----~~~~~ 336 (533)
+|...+..|+..++ .+|++ ++|||.+.....+ +..++
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~ 331 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELF 331 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHC
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHh
Confidence 47889999999985 46777 8899987432221 11111
Q ss_pred C---CeE-----EEEeC---------------------------------------------------------------
Q 009494 337 K---DIV-----VVSVG--------------------------------------------------------------- 345 (533)
Q Consensus 337 ~---~~~-----~i~~~--------------------------------------------------------------- 345 (533)
. +++ ++.+.
T Consensus 332 ~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~E 411 (922)
T 1nkt_A 332 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAE 411 (922)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHH
Confidence 1 000 00000
Q ss_pred ------------CCCCCCcCce-EEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEE
Q 009494 346 ------------KPNMPNKAVK-QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 346 ------------~~~~~~~~v~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~ 412 (533)
..+.+..... ....+.....|...+.+.+......+.|+||||+|+..++.|+..|. ..|+++.++
T Consensus 412 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~-~~Gi~~~vL 490 (922)
T 1nkt_A 412 LHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFT-KRRIPHNVL 490 (922)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH-HTTCCCEEE
T ss_pred HHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCCEEEe
Confidence 0001111111 12345556677778888776655556799999999999999999999 889999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc-----------------------------------------
Q 009494 413 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV----------------------------------------- 451 (533)
Q Consensus 413 h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v----------------------------------------- 451 (533)
||++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999888888888888888 599999999999999975
Q ss_pred -----------cEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHH----HHHHHHHHHcCC
Q 009494 452 -----------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF----QELVDILKSSGA 506 (533)
Q Consensus 452 -----------~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~~ 506 (533)
.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.-+- ..+...++..+.
T Consensus 569 ~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~ 638 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNL 638 (922)
T ss_dssp HHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTC
T ss_pred HhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCC
Confidence 4999999999999999999999999999999999998775332 334445555443
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=396.18 Aligned_cols=324 Identities=19% Similarity=0.272 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH-HHHHHHHcC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-EEQAKLLGK 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-~~~~~~~~~ 235 (533)
.|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+. .+.++++||++|+++|+.|| .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----HTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----cCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999988765321 13347799999999999999 999999887
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHH------HcCCCCCCCeeEEEEecchhhhhcCc-HHHHHHH
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL------MKHDIELDDIRMFVLDEVDCMLQRGF-RDQVMQI 308 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l------~~~~~~l~~~~~vVvDEah~~~~~~~-~~~~~~i 308 (533)
. ++++..+.|+.....+...+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...++ ...+...
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp T-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred c-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 5 58899999988776666666778999999999999888 44556788999999999999865442 2222222
Q ss_pred HHhC--------------CCCcEEEEeccCCHH-----------HHHHHHhhCCCeEEEEeCC-C---CCCCcCceEEEE
Q 009494 309 FRAI--------------SLPQILMYSATISQE-----------VEKMSSSISKDIVVVSVGK-P---NMPNKAVKQLAI 359 (533)
Q Consensus 309 ~~~~--------------~~~q~l~~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~-~---~~~~~~v~~~~~ 359 (533)
+... +.++++++|||+... +..+...+....+...... . ...... ...+.
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p-~~~~~ 240 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP-CKKFA 240 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC-EEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC-ceEEE
Confidence 2221 678999999999861 2223233222110000000 0 000000 00000
Q ss_pred Eec-----------------------------------------------------------------------------
Q 009494 360 WVE----------------------------------------------------------------------------- 362 (533)
Q Consensus 360 ~~~----------------------------------------------------------------------------- 362 (533)
++.
T Consensus 241 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (699)
T 4gl2_A 241 IADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMI 320 (699)
T ss_dssp EEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred EcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred ----------------------------------------------------------chhHHHHHHHHHhhccC--C-C
Q 009494 363 ----------------------------------------------------------SNKKKQKLFDILMSKQH--F-T 381 (533)
Q Consensus 363 ----------------------------------------------------------~~~k~~~l~~~l~~~~~--~-~ 381 (533)
...|...|.+++..... . +
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~ 400 (699)
T 4gl2_A 321 DAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEES 400 (699)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 00111122223322111 1 6
Q ss_pred CCeEEEEcchhhHHHHHHHHHhhc------CCeEEEEeCC--------CCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 009494 382 PPAVVYVGSRLGADLLSNAISVTT------GMKALSIHGE--------KPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 382 ~~~LVf~~s~~~a~~l~~~L~~~~------~~~~~~~h~~--------~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
.++||||+++..++.+++.|. .. |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~-~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWIT-ENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHH-SSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CcEEEEECcHHHHHHHHHHHH-hCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 799999999999999999998 44 7899999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 448 i~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
+|++++||+||+|+|+..|+||+|||||.| +.++++....
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999987754 3444444433
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-42 Score=404.74 Aligned_cols=339 Identities=18% Similarity=0.202 Sum_probs=259.7
Q ss_pred CCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhc-ccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLH-HSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
||++|+++|.+++|.++ +++|++++||||||||++|.+|++..+...... ......+.++||++|+++||.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999987 688999999999999999999999998764322 1123457789999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC--CCCCCeeEEEEecchhhhhcCcHHHHHHHH
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~~~~~~~~~~~~~i~ 309 (533)
+.....|+++..++|+.....+ ...+++|+|||||++..++.+.. ..++++++||+||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999998765432 13458999999999866655432 2378999999999997765 5677776666
Q ss_pred HhC--------CCCcEEEEeccCCHHHHHHHHhhCCCeE-EEEeCCCCCCCcCceEEEEEecchhHH---H----HHHHH
Q 009494 310 RAI--------SLPQILMYSATISQEVEKMSSSISKDIV-VVSVGKPNMPNKAVKQLAIWVESNKKK---Q----KLFDI 373 (533)
Q Consensus 310 ~~~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~v~~~~~~~~~~~k~---~----~l~~~ 373 (533)
.++ +..|+|++|||+|+ .+++++++...+. .+........+-.+.+.+..+...... . .+.+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 543 67899999999997 7778888765421 111112222333445544444332211 1 22233
Q ss_pred HhhccCCCCCeEEEEcchhhHHHHHHHHHhh------------------------------------cCCeEEEEeCCCC
Q 009494 374 LMSKQHFTPPAVVYVGSRLGADLLSNAISVT------------------------------------TGMKALSIHGEKP 417 (533)
Q Consensus 374 l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~------------------------------------~~~~~~~~h~~~~ 417 (533)
+.+. ..++++||||+|++.|+.+++.|.+. ....+.++||+|+
T Consensus 311 v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 311 IMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 3322 34578999999999999888877521 1234778999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE----cCC------CCCHhHHHHhhccccCCCC--ccEEEEE
Q 009494 418 MKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FDM------PNSIKEYVHQIGRASQMGD--EGTAIVF 485 (533)
Q Consensus 418 ~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~d~------p~s~~~y~qriGR~gR~g~--~g~~~~~ 485 (533)
+.+|..+++.|++|.++|||||+++++|+|+|..++||. |+. |.+..+|.||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999985 443 4689999999999999875 6999999
Q ss_pred ecCcCHHHHHHHH
Q 009494 486 VNEENKNLFQELV 498 (533)
Q Consensus 486 ~~~~~~~~~~~l~ 498 (533)
+++++...+..++
T Consensus 470 ~~~~~~~~~~~ll 482 (1724)
T 4f92_B 470 TSHGELQYYLSLL 482 (1724)
T ss_dssp EESTTCCHHHHHT
T ss_pred ecchhHHHHHHHH
Confidence 9988876665543
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-42 Score=379.49 Aligned_cols=334 Identities=16% Similarity=0.211 Sum_probs=252.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 145 KLLQNIEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~p~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.+.+.+...|| .||++|.++++.++.+ .+++++||||||||++|++|++..+.. +.+++|++|
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------g~qvlvlaP 425 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----------TSCEEEECS
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEeC
Confidence 34444577899 9999999999998865 589999999999999999999987643 567999999
Q ss_pred cHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH---HHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEEEEecch
Q 009494 219 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 219 tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah 294 (533)
|++||.|+++.++++....++++..++|+....+. ...+..+ ++|+|+||+.+.+ .+.+.++++||+||+|
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 99999999999999998888999999999876553 3445554 9999999987743 4568899999999999
Q ss_pred hhhhcCcHHHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHH
Q 009494 295 CMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDIL 374 (533)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l 374 (533)
++.... ...+......+++++||||+.+....+......+...+. ........+.. .+....+...+.+.+
T Consensus 501 r~g~~q----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~--~~p~~r~~i~~---~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 501 RFGVKQ----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVID--EMPPGRKEVQT---MLVPMDRVNEVYEFV 571 (780)
T ss_dssp CC---------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEEC--CCCSSCCCCEE---CCCCSSTHHHHHHHH
T ss_pred hhhHHH----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeee--ccCCCCcceEE---EEeccchHHHHHHHH
Confidence 964221 111122225689999999987655444332222222222 11111112221 122234456677777
Q ss_pred hhccCCCCCeEEEEcch--------hhHHHHHHHHHh-h-cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009494 375 MSKQHFTPPAVVYVGSR--------LGADLLSNAISV-T-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 375 ~~~~~~~~~~LVf~~s~--------~~a~~l~~~L~~-~-~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
......+.+++|||++. ..++.+++.|.. . .++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 76666778999999965 457888888873 2 3678899999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCC-CHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 445 GVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 445 Gldi~~v~~VI~~d~p~-s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
|+|+|++++||+++.|. +...|.||+||+||.|..|.|++++++.+. .....++.+...
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~-~~~~rl~~l~~~ 711 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE-EAMERLRFFTLN 711 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH-HHHHHHHHHHTC
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh-HHHHHHHHHHhh
Confidence 99999999999999996 789999999999999999999999984433 333444555554
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.6e-41 Score=381.42 Aligned_cols=306 Identities=20% Similarity=0.221 Sum_probs=241.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+| .|+|+|.++++.++.|++++++||||||||++|++++...+. .++++||++|+++|+.|+++.++++
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 45 489999999999999999999999999999999998877542 3678999999999999999999876
Q ss_pred cCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC
Q 009494 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS 313 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~ 313 (533)
+. ++++..++|+.... ..++|+|+||++|.+.+......+.++++|||||||++.+++++..+..++..++
T Consensus 106 ~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp C----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred cC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 54 46788888877543 3479999999999999988887889999999999999999999998999988884
Q ss_pred -CCcEEEEeccCCHHHHHHHHhhC----CCeEEEEeCCCCCCCcCceEEEEE----------------------------
Q 009494 314 -LPQILMYSATISQEVEKMSSSIS----KDIVVVSVGKPNMPNKAVKQLAIW---------------------------- 360 (533)
Q Consensus 314 -~~q~l~~SAT~~~~~~~l~~~~~----~~~~~i~~~~~~~~~~~v~~~~~~---------------------------- 360 (533)
..++|++|||+++.. .++.++. .+...+...... ..+.+.+..
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~---~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRP---VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNG 252 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCS---SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCC---ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhc
Confidence 689999999998744 4555442 222222222111 111111100
Q ss_pred -----------------------------------------------------------------ecchhHHHHHHHHHh
Q 009494 361 -----------------------------------------------------------------VESNKKKQKLFDILM 375 (533)
Q Consensus 361 -----------------------------------------------------------------~~~~~k~~~l~~~l~ 375 (533)
.....+...++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~ 332 (997)
T 4a4z_A 253 ESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR 332 (997)
T ss_dssp ----------------------------------------------------------------CCCCTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 011122345555554
Q ss_pred hccCCCCCeEEEEcchhhHHHHHHHHHhhcCC---------------------------------------eEEEEeCCC
Q 009494 376 SKQHFTPPAVVYVGSRLGADLLSNAISVTTGM---------------------------------------KALSIHGEK 416 (533)
Q Consensus 376 ~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~---------------------------------------~~~~~h~~~ 416 (533)
.. ...++||||+++..|+.++..|. ..++ .+..+||++
T Consensus 333 ~~--~~~~~IVF~~sr~~~e~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 333 KR--ELLPMVVFVFSKKRCEEYADWLE-GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp HT--TCCSEEEECSCHHHHHHHHHTTT-TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred hC--CCCCEEEEECCHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 43 34689999999999999999986 3333 478999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCC---------CHhHHHHhhccccCCC--CccEEEEE
Q 009494 417 PMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN---------SIKEYVHQIGRASQMG--DEGTAIVF 485 (533)
Q Consensus 417 ~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~---------s~~~y~qriGR~gR~g--~~g~~~~~ 485 (533)
++.+|..+++.|++|.++|||||+++++|+|+|+ ..||+++.|. |..+|+||+|||||.| ..|.++++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 6666666555 9999999999999998 56888888
Q ss_pred ec
Q 009494 486 VN 487 (533)
Q Consensus 486 ~~ 487 (533)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 83
No 40
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.7e-40 Score=317.22 Aligned_cols=238 Identities=34% Similarity=0.554 Sum_probs=217.8
Q ss_pred CCCHHHHHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhH
Q 009494 108 SLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTA 187 (533)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~ 187 (533)
.++.+++..+++..++.++|...|.|+.+|+++++++.+.+++.+.||..|+|+|.++++.++.|++++++||||||||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecC
Q 009494 188 SFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGT 267 (533)
Q Consensus 188 ~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~T 267 (533)
+|++|++.++...+. .....++++||++||++|+.|+++.++++....++++..++||.....+...+..+++|+|+|
T Consensus 82 ~~~l~~l~~l~~~~~--~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T 159 (242)
T 3fe2_A 82 SYLLPAIVHINHQPF--LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 159 (242)
T ss_dssp HHHHHHHHHHHTSCC--CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHHhccc--cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEEC
Confidence 999999998865321 123467889999999999999999999998888899999999999999888899999999999
Q ss_pred HHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCC
Q 009494 268 PGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 268 p~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 346 (533)
|++|.+++.+....+.++++||+||||++.+++|...+..++..+ +..|++++|||+|+.++.+++.++.+++.+.++.
T Consensus 160 p~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999888889999999999999999999999999999998 6789999999999999999999999999998875
Q ss_pred C
Q 009494 347 P 347 (533)
Q Consensus 347 ~ 347 (533)
.
T Consensus 240 ~ 240 (242)
T 3fe2_A 240 L 240 (242)
T ss_dssp -
T ss_pred C
Confidence 4
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.7e-39 Score=370.14 Aligned_cols=323 Identities=18% Similarity=0.208 Sum_probs=252.7
Q ss_pred CCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhC----CC--cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 140 CSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALS----GK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 140 ~~l~~~l~~~l~~-~g~~~p~p~Q~~~i~~~~~----~~--~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
++.+..+.+.+.. +||. |||+|.++++.++. ++ +++++++||+|||++|+++++..+. .+++
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------~g~~ 654 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------NHKQ 654 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------TTCE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------hCCe
Confidence 4566777777754 5885 79999999999885 66 8999999999999999988877543 3568
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH---HHHHHcC-CceeecCHHHHHHHHHcCCCCCCCeeEE
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~~~~v 288 (533)
++|++||++|+.|+++.++++....++++..+.+..+..+. ...+..+ ++|+|+||+.+. ..+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 99999999999999999998888888888888876655443 3344454 999999998662 35678999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHH
Q 009494 289 VLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 367 (533)
Q Consensus 289 VvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~ 367 (533)
|+||+|++.. ....++..+ ...++++||||+++....+......++..+... ......+...+.....
T Consensus 730 IiDEaH~~g~-----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~---- 798 (1151)
T 2eyq_A 730 IVDEEHRFGV-----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDS---- 798 (1151)
T ss_dssp EEESGGGSCH-----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCH----
T ss_pred EEechHhcCh-----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCH----
Confidence 9999999532 233333333 678999999998776766666666555443322 1122233333333222
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 009494 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGV 446 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gl 446 (533)
..+...+......+++++|||+++.+++.+++.|.+.. +..+..+||+|++.+|+.+++.|++|+++|||||+++++|+
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 22233333333456889999999999999999998432 78899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCC-CCCHhHHHHhhccccCCCCccEEEEEecCc
Q 009494 447 ELLGVRQVIIFDM-PNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 447 di~~v~~VI~~d~-p~s~~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
|+|++++||+++. +++...|.||+||+||.|+.|.|++++++.
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999998 568999999999999999999999999764
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.5e-41 Score=356.01 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..|+|+|.++++.++.++++++++|||+|||++|++++...+.. .++++||++||++|+.||.+.++++..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 48999999999999999999999999999999999888776542 234899999999999999999999866
Q ss_pred CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CC
Q 009494 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SL 314 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~ 314 (533)
..+..+..+.|+.....+ +..+.+|+|+||+.+.. .....+.++++||+||+|++.. ..+..++..+ +.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 656788888888776553 34568999999997643 3335578899999999999865 5577777777 67
Q ss_pred CcEEEEeccCCHHHHHHHH-hhCCCeEEEEeCCCC------CCCcCceEEEEEec---------------------chhH
Q 009494 315 PQILMYSATISQEVEKMSS-SISKDIVVVSVGKPN------MPNKAVKQLAIWVE---------------------SNKK 366 (533)
Q Consensus 315 ~q~l~~SAT~~~~~~~l~~-~~~~~~~~i~~~~~~------~~~~~v~~~~~~~~---------------------~~~k 366 (533)
.+++++|||+++....+.. .....+..+...... .....+........ ...+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 7999999999765422111 111112221111110 01111111111111 1122
Q ss_pred HHHHHHHHhhccCCCC-CeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccc
Q 009494 367 KQKLFDILMSKQHFTP-PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT-GILGR 444 (533)
Q Consensus 367 ~~~l~~~l~~~~~~~~-~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT-~~~~~ 444 (533)
...+.+++......++ ++|||++ ..+++.+++.|. ..+..+..+||++++.+|..+++.|++|+.+||||| +++++
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~-~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIK-NEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHH-TTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHH-HcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 3344555554433344 4555555 899999999998 556689999999999999999999999999999999 99999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEec
Q 009494 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 445 Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~ 487 (533)
|+|+|++++||++++|++...|.||+||+||.|+.|.++++++
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998875555554
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.4e-41 Score=360.74 Aligned_cols=318 Identities=13% Similarity=0.151 Sum_probs=235.3
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++++.+.+.+... ...|+|+|+++++.++++++++++||||||||++|++|++..+.. .++++||++||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~~~~vLvl~Pt 224 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------RRLRTLILAPT 224 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESS
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCeEEEEcCh
Confidence 34555544444332 478899998899999999999999999999999999999988764 35789999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 220 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
|+||.|+.+.++. ..+. ..++... . ....+..+.++|.+.+...+... ..+.++++||+||||++ +.
T Consensus 225 reLa~Qi~~~l~~------~~v~-~~~~~l~-~---~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 225 RVVAAEMEEALRG------LPIR-YQTPAVK-S---DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHHTTT------SCEE-ECCTTSS-C---CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHHhcC------Ccee-Eecccce-e---ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Cc
Confidence 9999999987652 2222 2221100 0 00123456678888887666554 45889999999999998 66
Q ss_pred CcHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhc
Q 009494 300 GFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK 377 (533)
Q Consensus 300 ~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~ 377 (533)
+|...+..++..+ +..|+++||||++..+..+.. .++..+.+.... +. .+...++..+..
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~~-------------~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-PE-------------RSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-CS-------------SCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-CH-------------HHHHHHHHHHHh-
Confidence 7787888887776 678999999999876543322 122222221110 00 011122333333
Q ss_pred cCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEE---
Q 009494 378 QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQV--- 454 (533)
Q Consensus 378 ~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~V--- 454 (533)
..+++||||+++..++.+++.|. ..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLR-KSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHH-HTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred --CCCCEEEEECChhHHHHHHHHHH-HcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEEC
Confidence 25689999999999999999998 779999999984 688899999999999999999999999997 8888
Q ss_pred -----------------EEcCCCCCHhHHHHhhccccCCCC-ccEEEEEec---CcCHHHHHHHHHHHHHcCC
Q 009494 455 -----------------IIFDMPNSIKEYVHQIGRASQMGD-EGTAIVFVN---EENKNLFQELVDILKSSGA 506 (533)
Q Consensus 455 -----------------I~~d~p~s~~~y~qriGR~gR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~ 506 (533)
|+++.|.+.++|+||+||+||.|. .|.|++|+. +.+...+..+.+.+.-.+.
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~ 498 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNI 498 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccc
Confidence 778889999999999999999975 899999997 7777777777777655443
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.8e-40 Score=346.82 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=213.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCcE-EEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSL-LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~-lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
|+.+|+|+|. ++|.++.++++ +++||||||||++|++|++.++.. .++++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEMEEALR- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHHHHHhc-
Confidence 7889999985 79999998887 889999999999999999987654 35789999999999999988774
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHH--
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR-- 310 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~-- 310 (533)
++.+....+.... ....+..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+......+..
T Consensus 70 -----g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 70 -----GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp -----TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred -----Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 2222211111111 11234578899999998877654 45889999999999987 3333333322322
Q ss_pred hCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcc
Q 009494 311 AISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS 390 (533)
Q Consensus 311 ~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s 390 (533)
..+..|+++||||++.....+ +..++..+..... .+.... ..+...+.. ..+++||||++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~~~-------------~~~~~~l~~---~~~~~lVF~~s 197 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-IPERSW-------------NTGFDWITD---YQGKTVWFVPS 197 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-CCSSCC-------------SSSCHHHHH---CCSCEEEECSS
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCcc-CCchhh-------------HHHHHHHHh---CCCCEEEEcCC
Confidence 236899999999998744332 2222222222211 110000 001222322 25689999999
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcC------------
Q 009494 391 RLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------------ 458 (533)
Q Consensus 391 ~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d------------ 458 (533)
+..++.+++.|. ..++.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 198 ~~~a~~l~~~L~-~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~ 271 (451)
T 2jlq_A 198 IKAGNDIANCLR-KSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGP 271 (451)
T ss_dssp HHHHHHHHHHHH-TTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSS
T ss_pred HHHHHHHHHHHH-HcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccc
Confidence 999999999998 67899999999764 57899999999999999999999999999 9999999
Q ss_pred --------CCCCHhHHHHhhccccCCCC-ccEEEEEecC
Q 009494 459 --------MPNSIKEYVHQIGRASQMGD-EGTAIVFVNE 488 (533)
Q Consensus 459 --------~p~s~~~y~qriGR~gR~g~-~g~~~~~~~~ 488 (533)
.|.|..+|+||+||+||.|. .|.+++|...
T Consensus 272 ~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 272 ERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2e-39 Score=342.14 Aligned_cols=292 Identities=19% Similarity=0.216 Sum_probs=223.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++||++|+++|+.||.+.++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~~--- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF--- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGGG---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHhC---
Confidence 7999999999999999999999999999999998887653 456999999999999999998884
Q ss_pred CCCe-EEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCC
Q 009494 237 LPFK-TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLP 315 (533)
Q Consensus 237 ~~~~-~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~ 315 (533)
++. +..+.|+... ..+|+|+||+++...+..- ..++++||+||+|++.+.+|. .++..++.+
T Consensus 157 -~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~----~~~~~~~~~ 219 (472)
T 2fwr_A 157 -GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSIAP 219 (472)
T ss_dssp -CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTH----HHHHTCCCS
T ss_pred -CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHH----HHHHhcCCC
Confidence 567 6766666542 4799999999997665421 246899999999999987765 466777889
Q ss_pred cEEEEeccCCH-------------------HHHHHHHhhCCCeEEEEe--CCCCC------------------------C
Q 009494 316 QILMYSATISQ-------------------EVEKMSSSISKDIVVVSV--GKPNM------------------------P 350 (533)
Q Consensus 316 q~l~~SAT~~~-------------------~~~~l~~~~~~~~~~i~~--~~~~~------------------------~ 350 (533)
+++++|||+.+ ....+...++.++....+ ..... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999972 233333333333322111 10000 0
Q ss_pred CcCceEEE---------------------EEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeE
Q 009494 351 NKAVKQLA---------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 351 ~~~v~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~ 409 (533)
...+.+.+ .......|...+.+++.. ..+.++||||+++..++.+++.|. +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~------~ 371 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL------I 371 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT------C
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC------c
Confidence 00000000 001223455666777765 346799999999999999999885 4
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCc-cEEE--EEe
Q 009494 410 LSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GTAI--VFV 486 (533)
Q Consensus 410 ~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~-g~~~--~~~ 486 (533)
..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|+|+..|+||+||+||.|+. +.++ .|+
T Consensus 372 ~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv 451 (472)
T 2fwr_A 372 PAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELI 451 (472)
T ss_dssp CBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEE
T ss_pred ceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999999999964 4444 455
Q ss_pred cCc
Q 009494 487 NEE 489 (533)
Q Consensus 487 ~~~ 489 (533)
+.+
T Consensus 452 ~~~ 454 (472)
T 2fwr_A 452 SRG 454 (472)
T ss_dssp ECS
T ss_pred eCC
Confidence 543
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.7e-39 Score=353.35 Aligned_cols=339 Identities=16% Similarity=0.181 Sum_probs=251.4
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCC
Q 009494 131 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
+.++..|+++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||||||+ ++|++..... . ..+.
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~---~~~~ 139 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--M---PHLE 139 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--C---GGGG
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--c---ccCC
Confidence 346778999999999999999988 7899999999998885 5679999999999999 5666622111 1 1123
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHc-CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEE
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLG-KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~v 288 (533)
++++++++|+++|+.|+.+.+.... ...+..+......... ...+.+|+++|||++.+.+... ..+.++++|
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~l 212 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCI 212 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEE
Confidence 5679999999999999987665433 2222222221111111 1235789999999999877764 358999999
Q ss_pred EEecchh-hhhcC-cHHHHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhH
Q 009494 289 VLDEVDC-MLQRG-FRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKK 366 (533)
Q Consensus 289 VvDEah~-~~~~~-~~~~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k 366 (533)
|+||+|. +++.. ....+..+....+..+++++|||++. +.+...+...++ +.+.... ..+.+.+........
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~~~~~~~v-i~v~gr~---~pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQRYFNDAPL-LAVPGRT---YPVELYYTPEFQRDY 286 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHHHTTSCCE-EECCCCC---CCEEEECCSSCCSCH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHHHhcCCCc-ccccCcc---cceEEEEecCCchhH
Confidence 9999995 55533 23445555666678999999999974 455555554444 3333222 234444433333333
Q ss_pred HHHHHHHHhhc--cCCCCCeEEEEcchhhHHHHHHHHHh----------hcCCeEEEEeCCCCHHHHHHHHHHHh-----
Q 009494 367 KQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV----------TTGMKALSIHGEKPMKERREIMRSFL----- 429 (533)
Q Consensus 367 ~~~l~~~l~~~--~~~~~~~LVf~~s~~~a~~l~~~L~~----------~~~~~~~~~h~~~~~~er~~~~~~f~----- 429 (533)
....+..+... ....+++||||+++.+++.+++.|.. ..++.+..+||++++.+|..+++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 33333332221 12367899999999999999999973 15778999999999999999999999
Q ss_pred cCCCcEEEEcccccccCCCCCccEEEEcCC------------------CCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 430 VGEVPVIVATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 430 ~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~------------------p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
+|..+|||||+++++|+|+|++++||++++ |.|...|+||+|||||. ..|.|++|+++.+.
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999999999887 88999999999999999 78999999986543
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2e-40 Score=344.94 Aligned_cols=283 Identities=16% Similarity=0.202 Sum_probs=199.3
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcC
Q 009494 168 SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 168 ~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
++++|++++++||||||||++|++|++..+.. .++++||++||++||.|+++.++.+ + +. ..++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~-~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VK-FHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS----C--EE-EESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC----C--eE-Eecc
Confidence 45689999999999999999999999987754 3578999999999999999887633 2 22 1111
Q ss_pred cchHHHHHHHHcCCce-eecCHHHHHHHHH--------cCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHh--CCCCc
Q 009494 248 DAMARQVYRIQQGVEL-IVGTPGRLIDLLM--------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA--ISLPQ 316 (533)
Q Consensus 248 ~~~~~~~~~l~~~~~I-ii~Tp~~l~~~l~--------~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~--~~~~q 316 (533)
.+ .++||+++.+++. .....+.++++||+||+|++ +.++...+..+... ...+|
T Consensus 68 --------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 68 --------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp --------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred --------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 11 3777765543222 12345789999999999998 33333222222222 25799
Q ss_pred EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHH
Q 009494 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~ 396 (533)
+++||||+++.+..+.... .++. .....+..... ..++..+.+ .++++||||+++..++.
T Consensus 133 ~l~~SAT~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~-~~~~~~l~~---~~~~~lVF~~s~~~a~~ 192 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHSN--GEIE--------------DVQTDIPSEPW-NTGHDWILA---DKRPTAWFLPSIRAANV 192 (440)
T ss_dssp EEEECSSCTTCCCSSCCCS--SCEE--------------EEECCCCSSCC-SSSCHHHHH---CCSCEEEECSCHHHHHH
T ss_pred EEEEeCCCCchhhhhhhcC--CCee--------------EeeeccChHHH-HHHHHHHHh---cCCCEEEEeCCHHHHHH
Confidence 9999999987654332221 1111 11111111111 112223332 25789999999999999
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE-------------------c
Q 009494 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-------------------F 457 (533)
Q Consensus 397 l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-------------------~ 457 (533)
+++.|. ..++.+..+|| .+|..+++.|++|+++|||||+++++|+|+| +++||+ +
T Consensus 193 l~~~L~-~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 193 MAASLR-KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp HHHHHH-HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred HHHHHH-HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 999998 66899999999 3688999999999999999999999999999 999996 8
Q ss_pred CCCCCHhHHHHhhccccCC-CCccEEEEEe---cCcCHHHHHHHHHHHHHcCCc
Q 009494 458 DMPNSIKEYVHQIGRASQM-GDEGTAIVFV---NEENKNLFQELVDILKSSGAV 507 (533)
Q Consensus 458 d~p~s~~~y~qriGR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~ 507 (533)
+.|.+..+|+||+||+||. |..|.|++|+ ++.+...+..+...+...+..
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 320 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNME 320 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSC
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccc
Confidence 8999999999999999998 6899999996 677888888887777665554
No 48
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-37 Score=299.74 Aligned_cols=237 Identities=34% Similarity=0.590 Sum_probs=203.1
Q ss_pred hcCceeecCCCCC--cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 120 RLEINVKGDAVPA--PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 120 ~~~i~~~~~~~p~--~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
++.+.++|...|. ++.+|+++++++.+.++|...||..|+|+|.++++.++.+++++++||||||||++|++|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4567788888887 89999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhcc--cCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHH
Q 009494 198 ANIRLHH--SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL 275 (533)
Q Consensus 198 ~~~~~~~--~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l 275 (533)
....... .....++++||++||++|+.|+.+.++++....++++..++||.....+...+..+++|+|+||++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 6532110 11234578999999999999999999999888889999999999988888888888999999999999999
Q ss_pred HcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC--C---CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCC
Q 009494 276 MKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP 350 (533)
Q Consensus 276 ~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~--~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~ 350 (533)
......+.++++||+||||++.+++|...+..++..+ + ..|++++|||+++.+..+++.++.++..+.++.....
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 9888889999999999999999999999999999964 3 5789999999999999999999999999988877665
Q ss_pred CcCceE
Q 009494 351 NKAVKQ 356 (533)
Q Consensus 351 ~~~v~~ 356 (533)
...+.|
T Consensus 246 ~~~i~q 251 (253)
T 1wrb_A 246 SDSIKQ 251 (253)
T ss_dssp ------
T ss_pred cCCcee
Confidence 555554
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=8.3e-39 Score=346.37 Aligned_cols=304 Identities=15% Similarity=0.204 Sum_probs=213.4
Q ss_pred HHHcCCC-----CCCHHHH-----HHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceE
Q 009494 150 IEAAGYD-----MPTPVQM-----QAIPSAL------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 150 l~~~g~~-----~p~p~Q~-----~~i~~~~------~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+...||. .|+|+|. +++|.++ .+++++++||||||||++|++|++..+.. .++++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---------~~~~~ 273 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---------KRLRT 273 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---------TTCCE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCcE
Confidence 3445666 8999999 9999988 89999999999999999999999987653 35789
Q ss_pred EEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
||++||++||.|+++.++.+ ++. ...+. ... ....+.-+-+.+.+.+.+.+... ..+.++++||+||+
T Consensus 274 lilaPTr~La~Q~~~~l~~~----~i~---~~~~~-l~~---v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEa 341 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGL----PVR---YLTPA-VQR---EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEA 341 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTS----CCE---ECCC----C---CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEEST
T ss_pred EEEccHHHHHHHHHHHHhcC----Cee---eeccc-ccc---cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCC
Confidence 99999999999999887644 222 11110 000 00011123334445554444433 56889999999999
Q ss_pred hhhhhcCcHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHH
Q 009494 294 DCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~ 371 (533)
|++ +..+...+..+...+ ..+|+++||||++..+..+... ..++. . ....+.... ...++
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~-------------v~~~~~~~~-~~~~l 403 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-D-------------VSSEIPDRA-WSSGF 403 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-E-------------EECCCCSSC-CSSCC
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-E-------------EeeecCHHH-HHHHH
Confidence 998 222222222222222 5789999999998754332211 11111 1 100011111 11122
Q ss_pred HHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc
Q 009494 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
..+.+ .++++||||+++..++.+++.|. ..++.+..+||+ +|..+++.|++|+++|||||+++++|+|+| +
T Consensus 404 ~~l~~---~~~~~lVF~~s~~~~e~la~~L~-~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v 474 (673)
T 2wv9_A 404 EWITD---YAGKTVWFVASVKMSNEIAQCLQ-RAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-A 474 (673)
T ss_dssp HHHHS---CCSCEEEECSSHHHHHHHHHHHH-TTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-C
T ss_pred HHHHh---CCCCEEEEECCHHHHHHHHHHHH-hCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-C
Confidence 33332 46799999999999999999998 669999999994 789999999999999999999999999999 9
Q ss_pred cEEEE--------------------cCCCCCHhHHHHhhccccCC-CCccEEEEEe---cCcCHHHHHHHHHHH
Q 009494 452 RQVII--------------------FDMPNSIKEYVHQIGRASQM-GDEGTAIVFV---NEENKNLFQELVDIL 501 (533)
Q Consensus 452 ~~VI~--------------------~d~p~s~~~y~qriGR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l 501 (533)
++||+ ||+|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..+...+
T Consensus 475 ~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 475 SRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp SEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99998 67899999999999999999 7899999996 566665555555544
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.3e-39 Score=342.78 Aligned_cols=277 Identities=16% Similarity=0.152 Sum_probs=209.2
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC
Q 009494 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 158 p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
++++|.++++.+..+++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~~--- 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKAH--- 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHHh---
Confidence 44566666667778899999999999999999988875 24579999999999999988776554
Q ss_pred CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCC-Cc
Q 009494 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQ 316 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~-~q 316 (533)
+..+...+|+.. +..+.+|+|+||++| +....+.++++++||||||| +++.+|...+..+++.++. .+
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 344556667654 245689999999997 45667788999999999996 5567788888888888843 34
Q ss_pred --EEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhH
Q 009494 317 --ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGA 394 (533)
Q Consensus 317 --~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a 394 (533)
++++|||++..+. ........+..... ..+ ........ + .....+++||||++++.+
T Consensus 351 ~llil~SAT~~~~i~----~~~p~i~~v~~~~~----~~i----~~~~~~~~-------l--~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 351 RLVVLATATPPGSVT----VPHPNIEEVALSNT----GEI----PFYGKAIP-------I--EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp SEEEEEESSCTTCCC----CCCTTEEEEECBSC----SSE----EETTEEEC-------G--GGSSSSEEEEECSCHHHH
T ss_pred ceEEEECCCCCcccc----cCCcceEEEeeccc----chh----HHHHhhhh-------h--hhccCCcEEEEeCCHHHH
Confidence 6888999997321 00001111111110 000 01110000 0 112467899999999999
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEE----------EcC------
Q 009494 395 DLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI----------IFD------ 458 (533)
Q Consensus 395 ~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI----------~~d------ 458 (533)
+.+++.|. ..++.+..+||++++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 410 e~la~~L~-~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~g 480 (666)
T 3o8b_A 410 DELAAKLS-GLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFT 480 (666)
T ss_dssp HHHHHHHH-TTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCE
T ss_pred HHHHHHHH-hCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccc
Confidence 99999998 77999999999999765 4567779999999999999997 99988 677
Q ss_pred -----CCCCHhHHHHhhccccCCCCccEEEEEecCcCHHH
Q 009494 459 -----MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 493 (533)
Q Consensus 459 -----~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~ 493 (533)
.|.+.++|+||+||+|| |..|. ++|+++.+...
T Consensus 481 l~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 481 IETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99998776544
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.9e-38 Score=332.09 Aligned_cols=273 Identities=16% Similarity=0.203 Sum_probs=198.0
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEE
Q 009494 166 IPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVV 245 (533)
Q Consensus 166 i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~ 245 (533)
...+..+++++++||||||||++|++|++..+.. .++++||++||++|+.|+++.++ ++.+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhc------CceEeEEe
Confidence 4445678999999999999999999999988753 35789999999999999988876 22222211
Q ss_pred cCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh-----hhhcCcHHHHHHHHHhCCCCcEEEE
Q 009494 246 GGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-----MLQRGFRDQVMQIFRAISLPQILMY 320 (533)
Q Consensus 246 gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~-----~~~~~~~~~~~~i~~~~~~~q~l~~ 320 (533)
+.... .-..+..+.++|.+.+...+... ..+.++++||+||||+ ++..+|.... ...+..|+++|
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~----~~~~~~~~il~ 149 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK----VELGEAAAIFM 149 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH----HHTTSCEEEEE
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH----hccCCccEEEE
Confidence 11110 01233457788999887766654 4688999999999998 4544443322 23478999999
Q ss_pred eccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHH
Q 009494 321 SATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNA 400 (533)
Q Consensus 321 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~ 400 (533)
|||++..+..+... ..++...... .+.. +...++..+.. ..+++||||+++..++.+++.
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~~--~~~~-------------~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQDE--IPDR-------------AWSSGYEWITE---YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEECC--CCSS-------------CCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHH
T ss_pred EcCCCcchhhhccC--CCCeEEeccc--CCcc-------------hhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHH
Confidence 99999754332221 2222221100 0000 00111223332 257899999999999999999
Q ss_pred HHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEE--------------------cCCC
Q 009494 401 ISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII--------------------FDMP 460 (533)
Q Consensus 401 L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~--------------------~d~p 460 (533)
|. ..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 210 L~-~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 210 LQ-RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HH-HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HH-hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 98 679999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHhHHHHhhccccCCCC-ccEEEEEecCc
Q 009494 461 NSIKEYVHQIGRASQMGD-EGTAIVFVNEE 489 (533)
Q Consensus 461 ~s~~~y~qriGR~gR~g~-~g~~~~~~~~~ 489 (533)
.|..+|+||+||+||.|. .|.+++|+...
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999997 89999999875
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=286.70 Aligned_cols=215 Identities=35% Similarity=0.516 Sum_probs=186.7
Q ss_pred cCCCCCcccCccc-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhccc
Q 009494 127 GDAVPAPILSFSS-CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 127 ~~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
+...|.|+.+|++ +++++.+++++.+.||.+|+|+|.++++.++.|++++++||||||||++|++|++..+.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~- 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR- 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh-
Confidence 3568999999999 79999999999999999999999999999999999999999999999999999998875432211
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
....++++||++||++|+.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12467889999999999999999999986 44789999999998888888888999999999999999999888889999
Q ss_pred eEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEE
Q 009494 286 RMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVS 343 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 343 (533)
++||+||||++.+++|...+..++..+ +..|++++|||+|+.++.++..++.+++.+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999988 4789999999999999999999999998765
No 53
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=291.18 Aligned_cols=229 Identities=36% Similarity=0.606 Sum_probs=199.1
Q ss_pred HHHHHHHhcCceeecCCCCCcccCcccC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 113 QTDSLRKRLEINVKGDAVPAPILSFSSC----SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 113 ~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
+...++++..+.+.|...|.|+.+|+++ ++++.+++++.+.||..|+|+|.++++.++.|+++++.||||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4567889999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH-HHHcCCceeecC
Q 009494 189 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY-RIQQGVELIVGT 267 (533)
Q Consensus 189 ~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-~l~~~~~Iii~T 267 (533)
|++|++.++.. ....++++||++||++|+.|+++.++++....++++..+.|+........ ....+++|+|+|
T Consensus 83 ~~l~~l~~l~~------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 156 (245)
T 3dkp_A 83 FSIPILMQLKQ------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT 156 (245)
T ss_dssp HHHHHHHHHCS------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEEC
T ss_pred HHHHHHHHHhh------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEEC
Confidence 99999988753 22456789999999999999999999999888888887777644332211 123468999999
Q ss_pred HHHHHHHHHcC--CCCCCCeeEEEEecchhhhh---cCcHHHHHHHHHhC--CCCcEEEEeccCCHHHHHHHHhhCCCeE
Q 009494 268 PGRLIDLLMKH--DIELDDIRMFVLDEVDCMLQ---RGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIV 340 (533)
Q Consensus 268 p~~l~~~l~~~--~~~l~~~~~vVvDEah~~~~---~~~~~~~~~i~~~~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~ 340 (533)
|++|.+++... ...+.++++||+||||++.+ .+|...+..++..+ +..|+++||||+|+++..+++.++.+++
T Consensus 157 p~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 157 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI 236 (245)
T ss_dssp HHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCE
Confidence 99999999876 46789999999999999998 57889999988776 4679999999999999999999999999
Q ss_pred EEEeCCC
Q 009494 341 VVSVGKP 347 (533)
Q Consensus 341 ~i~~~~~ 347 (533)
.+.++..
T Consensus 237 ~i~~~~~ 243 (245)
T 3dkp_A 237 SVSIGAR 243 (245)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9988764
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.8e-37 Score=335.86 Aligned_cols=315 Identities=16% Similarity=0.197 Sum_probs=194.9
Q ss_pred CCCHHHHHHHHHHhC----C-CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH-HHH
Q 009494 157 MPTPVQMQAIPSALS----G-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE-EQA 230 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~----~-~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~-~~~ 230 (533)
.|+|+|.++++.++. + ++++++++||||||++++ +++..+....+.......++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999875 4 668999999999999865 444555443222222236788999999999999998 766
Q ss_pred HHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc----CCCCCCCeeEEEEecchhhhhcCcHHHHH
Q 009494 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK----HDIELDDIRMFVLDEVDCMLQRGFRDQVM 306 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~----~~~~l~~~~~vVvDEah~~~~~~~~~~~~ 306 (533)
+.+.. ....+.++. ...+.+|+|+||++|...... ..+...++++||+||||++...+ ...+.
T Consensus 257 ~~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 65543 333333322 234589999999999877642 23456789999999999987643 35677
Q ss_pred HHHHhCCCCcEEEEeccCCHHHHH------------------HHHhhCCCeEEEEeCCCCCCC-------------cCce
Q 009494 307 QIFRAISLPQILMYSATISQEVEK------------------MSSSISKDIVVVSVGKPNMPN-------------KAVK 355 (533)
Q Consensus 307 ~i~~~~~~~q~l~~SAT~~~~~~~------------------l~~~~~~~~~~i~~~~~~~~~-------------~~v~ 355 (533)
.++..++..++++||||+...... +...++.++....+....... ..+.
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 888888889999999998743221 112222232222221110000 0000
Q ss_pred EEEEEecc-------hhHHHH----HHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhc-------CCeEEEEeCCCC
Q 009494 356 QLAIWVES-------NKKKQK----LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-------GMKALSIHGEKP 417 (533)
Q Consensus 356 ~~~~~~~~-------~~k~~~----l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~-------~~~~~~~h~~~~ 417 (533)
........ ..+... +.+.+... ...+++||||+++.+|+.+++.|.+.. +..+..+||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 111122 22223222 345789999999999999999997321 122678899876
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCC--ccEEEEEec
Q 009494 418 MKERREIMRSFLVGEVP---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD--EGTAIVFVN 487 (533)
Q Consensus 418 ~~er~~~~~~f~~g~~~---VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~--~g~~~~~~~ 487 (533)
. +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|...|+||+||+||.+. .+..+++++
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 4 799999999998766 88999999999999999999999999999999999999999875 333444444
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=286.08 Aligned_cols=207 Identities=32% Similarity=0.559 Sum_probs=190.3
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCc
Q 009494 132 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 211 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 211 (533)
.+..+|+++++++.+.++|...||..|+|+|.++++.++.+++++++||||||||++|++|++..+... ..++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------~~~~ 112 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-------PQRL 112 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CCSS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-------CCCc
Confidence 456789999999999999999999999999999999999999999999999999999999999887651 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHc-CCCCCCCeeEEEE
Q 009494 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVL 290 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~-~~~~l~~~~~vVv 290 (533)
++||++||++|+.|+.+.++++....++++..++||.....+...+..+++|+|+||++|.+.+.+ ..+.+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 899999999999999999999988888999999999998888888888999999999999998886 4567899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeC
Q 009494 291 DEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 291 DEah~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 345 (533)
||||++.+++|...+..++..++ ..|++++|||+++.++.+++.++.+++.+.++
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999884 78999999999999999999999999887654
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.8e-36 Score=312.04 Aligned_cols=269 Identities=12% Similarity=0.143 Sum_probs=192.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|++++++||||||||++|++|++..+.. .+++++|++||++|+.|+++.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 37899999999999999999999976653 35689999999999999887765 3344443333211
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHh--CCCCcEEEEeccCCHHH
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA--ISLPQILMYSATISQEV 328 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~--~~~~q~l~~SAT~~~~~ 328 (533)
.-..+.-+.+.|.+.+.+.+.. ...+.++++||+||+|++ +.++......+... .+.+++++||||+++.+
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred -----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 1122455677899988776666 556889999999999997 33333333333333 35799999999999743
Q ss_pred HHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCe
Q 009494 329 EKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMK 408 (533)
Q Consensus 329 ~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~ 408 (533)
..+... ..+ +......... .+...+++.+.. .++++||||+++..++.+++.|. ..++.
T Consensus 139 ~~~~~~--~~~--------------i~~~~~~~~~-~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~-~~~~~ 197 (431)
T 2v6i_A 139 EAFPPS--NSP--------------IIDEETRIPD-KAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQ-KAGKK 197 (431)
T ss_dssp CSSCCC--SSC--------------CEEEECCCCS-SCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHH-HTTCC
T ss_pred hhhcCC--CCc--------------eeeccccCCH-HHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHH-HcCCe
Confidence 222111 011 1110001111 111222334433 25689999999999999999998 56899
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccE-----------------EEEcCCCCCHhHHHHhhc
Q 009494 409 ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQ-----------------VIIFDMPNSIKEYVHQIG 471 (533)
Q Consensus 409 ~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~-----------------VI~~d~p~s~~~y~qriG 471 (533)
+..+||+ +|..+++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+|
T Consensus 198 v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~G 272 (431)
T 2v6i_A 198 VLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRG 272 (431)
T ss_dssp EEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHT
T ss_pred EEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhh
Confidence 9999997 578899999999999999999999999999 655 678899999999999999
Q ss_pred cccCCCC-ccEEEEEec
Q 009494 472 RASQMGD-EGTAIVFVN 487 (533)
Q Consensus 472 R~gR~g~-~g~~~~~~~ 487 (533)
|+||.|. .|.++++..
T Consensus 273 R~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 273 RIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp TSSCCTTCCCCEEEECS
T ss_pred ccCCCCCCCCeEEEEcC
Confidence 9999985 456666653
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1e-35 Score=284.31 Aligned_cols=213 Identities=31% Similarity=0.538 Sum_probs=178.8
Q ss_pred ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhccc
Q 009494 126 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 126 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
.....|.++.+|+++++++.++++|.+.||..|+|+|.++++.++.+++++++||||||||++|++|++..+..
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------ 94 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------ 94 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 34556778899999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcC-CceeecCHHHHHHHHHcCCCCCCC
Q 009494 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
...++++||++||++|+.|+.+.+++++...++.+..++||.....+...+..+ ++|+|+||++|.+.+.++...+.+
T Consensus 95 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 95 -EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred -cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 135678999999999999999999999988888999999998887777777666 899999999999999988888899
Q ss_pred eeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeC
Q 009494 285 IRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 285 ~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 345 (533)
+++||+||||++.+++|...+..++..+ ...|++++|||+++.+..+++.++.++..+.++
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999888 468999999999999999999999999887654
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=278.50 Aligned_cols=228 Identities=32% Similarity=0.488 Sum_probs=196.2
Q ss_pred CHHHHHHHHHhcCceeecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 110 TIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
+.++.+.+++++.. ..+.++.+|+++++++.+.+.|.+.||..|+|+|.++++.++.++++++++|||||||++|
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 5 ERESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cHhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34566666666553 2256778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHH
Q 009494 190 LVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPG 269 (533)
Q Consensus 190 llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~ 269 (533)
++|++..+..... ....++++||++||++|+.|+.+.++.+....++++..++||.....+...+ .+++|+|+||+
T Consensus 80 ~~~~l~~l~~~~~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~ 155 (236)
T 2pl3_A 80 LVPVLEALYRLQW---TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPG 155 (236)
T ss_dssp HHHHHHHHHHTTC---CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHH
T ss_pred HHHHHHHHHhhcc---cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHH
Confidence 9999988765321 1134678999999999999999999999888889999999998877765555 57999999999
Q ss_pred HHHHHHHcC-CCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCC
Q 009494 270 RLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 270 ~l~~~l~~~-~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 346 (533)
+|.+.+... ...+.++++||+||||++.+++|...+..++..++ ..|++++|||+++.+..+++.++.+|..+.++.
T Consensus 156 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 156 RLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999988765 46788999999999999999999999999999984 778999999999999999999999998887654
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3e-35 Score=279.88 Aligned_cols=211 Identities=29% Similarity=0.533 Sum_probs=182.8
Q ss_pred ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhccc
Q 009494 126 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 126 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
.++..|.+..+|+++++++.+.++|.+.||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+..
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 88 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ 88 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 35667788889999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCC
Q 009494 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
...++++||++||++|+.|+++.++++.... ++++..++||.....+...+ .+++|+|+||++|.+++....+.+.+
T Consensus 89 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 89 -ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred -cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccccc
Confidence 2346789999999999999999999998765 78888999988876655444 57999999999999999888888899
Q ss_pred eeEEEEecchhhhhcC-cHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEe
Q 009494 285 IRMFVLDEVDCMLQRG-FRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 285 ~~~vVvDEah~~~~~~-~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 344 (533)
+++||+||||++.+++ |...+..++..++ ..|++++|||+++.+..+...++.++..+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999987 9999999999986 7899999999999999999999999887754
No 60
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4e-35 Score=311.44 Aligned_cols=326 Identities=15% Similarity=0.185 Sum_probs=226.5
Q ss_pred CCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+|+|.++++++. .+++++++++||+|||++++. ++..+.. .+...++|||+|+ +|+.||.++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~-------~~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKK-------ENELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHH-------TTCCSSEEEEECS-TTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHh-------cCCCCCEEEEccH-HHHHHHHHHHH
Confidence 368999999998874 678999999999999998654 4444332 1345679999996 68899999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHh
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~ 311 (533)
++... .++..+.|+... ....+.+|+|+||+++..... +....+++||+||||++.+.+ ......+..
T Consensus 107 ~~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~ 174 (500)
T 1z63_A 107 KFAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 174 (500)
T ss_dssp HHCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred HHCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHh
Confidence 99764 455555554422 112357999999999865433 334578999999999997654 345566677
Q ss_pred CCCCcEEEEeccCCHH-HHHH---H---------------------------------HhhCCCeEEEEeCCC---CCCC
Q 009494 312 ISLPQILMYSATISQE-VEKM---S---------------------------------SSISKDIVVVSVGKP---NMPN 351 (533)
Q Consensus 312 ~~~~q~l~~SAT~~~~-~~~l---~---------------------------------~~~~~~~~~i~~~~~---~~~~ 351 (533)
+...+.+++|||+... ..++ . ..++........... ....
T Consensus 175 l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 175 LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDL 254 (500)
T ss_dssp SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTS
T ss_pred hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcC
Confidence 7778899999998421 1111 1 111111111111100 0011
Q ss_pred cCceEEEEEec---------------------------------------------------------chhHHHHHHHHH
Q 009494 352 KAVKQLAIWVE---------------------------------------------------------SNKKKQKLFDIL 374 (533)
Q Consensus 352 ~~v~~~~~~~~---------------------------------------------------------~~~k~~~l~~~l 374 (533)
+.......++. ...|...+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11122222221 123344455566
Q ss_pred hhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC-CCc-EEEEcccccccCCCCCcc
Q 009494 375 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVATGILGRGVELLGVR 452 (533)
Q Consensus 375 ~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g-~~~-VLvaT~~~~~Gldi~~v~ 452 (533)
......+.++||||+++..++.++..|....++.+..+||++++.+|..+++.|++| ..+ +|++|+++++|+|++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 555556789999999999999999999854589999999999999999999999998 565 789999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhccccCCCCccEEEE--EecCcCHHHHHHHHHHHHHc
Q 009494 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV--FVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 453 ~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~--~~~~~~~~~~~~l~~~l~~~ 504 (533)
+||++|+|+++..|.||+||++|.|+.+.+.+ |+... ..-..+.+.++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~--tiee~i~~~~~~K 466 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG--TLEEKIDQLLAFK 466 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT--SHHHHTHHHHTTC
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC--CHHHHHHHHHHHH
Confidence 99999999999999999999999999876644 44433 3334555555443
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9e-35 Score=271.64 Aligned_cols=201 Identities=33% Similarity=0.570 Sum_probs=184.5
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEE
Q 009494 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|+++++++.+++.|.+.||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...++++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------~~~~~~~l 75 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-------KKDNIQAM 75 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-------TSCSCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-------cCCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999987542 23567899
Q ss_pred EEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecc
Q 009494 215 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEa 293 (533)
|++||++|+.|+++.++++.... +.++...+|+.....+...+..+++|+|+||+++.+.+.++...+.++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 99999999999999999998776 68889999999888877777788999999999999999988888999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEE
Q 009494 294 DCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVV 342 (533)
Q Consensus 294 h~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i 342 (533)
|++.+.+|...+..++..++ ..|++++|||+|..+..+++.++.+|..+
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999886 78999999999999999999999888765
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=290.19 Aligned_cols=215 Identities=32% Similarity=0.543 Sum_probs=186.7
Q ss_pred CceeecCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHH
Q 009494 122 EINVKGDAVPAP---ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQ 196 (533)
Q Consensus 122 ~i~~~~~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~ 196 (533)
.+.+.+...+.| +.+|++++|++.++++|..+||..|||+|.++||.++.+ ++++++||||||||++|++|++.+
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 455666655544 578999999999999999999999999999999999987 999999999999999999999988
Q ss_pred HhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHH
Q 009494 197 CANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL 275 (533)
Q Consensus 197 l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l 275 (533)
+.. ...++++||++|||+||.|+++.++.+.... ++.+...+||....... ..+++|+|+||++|.+++
T Consensus 156 l~~-------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 156 VEP-------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp CCT-------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHH
T ss_pred hhc-------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHH
Confidence 643 2456789999999999999999999998765 57888888887654321 456899999999999999
Q ss_pred Hc-CCCCCCCeeEEEEecchhhhh-cCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCC
Q 009494 276 MK-HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 276 ~~-~~~~l~~~~~vVvDEah~~~~-~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 346 (533)
.+ +.+.+.++++|||||||+|++ .+|...+..++..+ +.+|+++||||+++.+..+++.++.+|..+.+..
T Consensus 226 ~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 226 SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp TTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 76 567789999999999999998 68999999999888 5689999999999999999999999999887643
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-35 Score=278.23 Aligned_cols=208 Identities=25% Similarity=0.449 Sum_probs=184.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
|..+|+++++++.+.+.+.+.||..|+|+|.++++.++.++++++++|||||||++|++|++..+.. ...+++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------~~~~~~ 74 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------ERAEVQ 74 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-------TSCSCC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-------CcCCce
Confidence 3467999999999999999999999999999999999999999999999999999999999987643 234678
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCC----CCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEE
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGL----PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~v 288 (533)
+||++||++|+.|+++.++++.... ++.+..++||.....+...+..+++|+|+||+++.+.+.++...+.++++|
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 9999999999999999999998766 678888999887766555555678999999999999999888888999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC
Q 009494 289 VLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKP 347 (533)
Q Consensus 289 VvDEah~~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 347 (533)
|+||||++.+++|...+..++..++ ..|++++|||+++++..+.+.++.+|..+.+...
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 9999999999999999999999884 6899999999999999999999999988876543
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=8.1e-36 Score=337.23 Aligned_cols=333 Identities=16% Similarity=0.179 Sum_probs=231.4
Q ss_pred CCCCHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+.. +...++|||+|+ .|+.||..++.+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------g~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--------GAAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--------SSCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--------CCCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 3789999999999885 4578999999999999987766655432 344579999999 9999999999766
Q ss_pred cCCCCCeEEEEEcCcchHHHHHH---HHcCCceeecCHHHHHHHHHc-CCCCCCCeeEEEEecchhhhhcCcH-HHHHHH
Q 009494 234 GKGLPFKTALVVGGDAMARQVYR---IQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVLDEVDCMLQRGFR-DQVMQI 308 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~Iii~Tp~~l~~~l~~-~~~~l~~~~~vVvDEah~~~~~~~~-~~~~~i 308 (533)
+ ++.+..+.++ ........ .....+|+|+|++.+...... ..+...++++||+||||++.+.+.. ......
T Consensus 223 f---~l~v~v~~~~-~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 223 F---NLRFALFDDE-RYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp S---CCCCEECCHH-HHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred h---CCCEEEEccc-hhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 5 3444444332 22221111 112468999999988532111 1123457899999999999765421 111223
Q ss_pred HHhC--CCCcEEEEeccCCH-H---HHHH----------------------------HHhhCCC----------------
Q 009494 309 FRAI--SLPQILMYSATISQ-E---VEKM----------------------------SSSISKD---------------- 338 (533)
Q Consensus 309 ~~~~--~~~q~l~~SAT~~~-~---~~~l----------------------------~~~~~~~---------------- 338 (533)
+..+ ..++++++|||+.. . +..+ ...+...
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 3333 46679999999732 0 0000 0000000
Q ss_pred ------------------------------------eEEEEeCCC---CCCCcCceEEE---------------------
Q 009494 339 ------------------------------------IVVVSVGKP---NMPNKAVKQLA--------------------- 358 (533)
Q Consensus 339 ------------------------------------~~~i~~~~~---~~~~~~v~~~~--------------------- 358 (533)
.+.+..... ..+........
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 000000000 00000000000
Q ss_pred ------------------------EEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeC
Q 009494 359 ------------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG 414 (533)
Q Consensus 359 ------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~ 414 (533)
.+.....|...+.+++.. ..+.++||||+++..++.++..|....|+++..+||
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG 536 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHE 536 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECT
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 123334566777777766 456799999999999999999998556999999999
Q ss_pred CCCHHHHHHHHHHHhcCC--CcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHH
Q 009494 415 EKPMKERREIMRSFLVGE--VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKN 492 (533)
Q Consensus 415 ~~~~~er~~~~~~f~~g~--~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~ 492 (533)
+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.++++....+..
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 999999999999999998 999999999999999999999999999999999999999999999999877776655555
Q ss_pred HHHHHHHHHHH
Q 009494 493 LFQELVDILKS 503 (533)
Q Consensus 493 ~~~~l~~~l~~ 503 (533)
....+.+.+..
T Consensus 617 ~ee~i~~~~~~ 627 (968)
T 3dmq_A 617 AQSVLVRWYHE 627 (968)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55666666643
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.2e-34 Score=274.42 Aligned_cols=212 Identities=29% Similarity=0.566 Sum_probs=181.6
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCC
Q 009494 128 DAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 128 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
...|+++.+|+++++++.+.+.+.+.||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. .
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------~ 79 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------S 79 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------T
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-------c
Confidence 345678889999999999999999999999999999999999999999999999999999999999987643 2
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeE
Q 009494 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRM 287 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~ 287 (533)
..++++||++||++|+.|+++.++.+....++++..+.||.....+...+.. ++|+|+||++|.+.+.+....+.++++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 158 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKM 158 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 4567899999999999999999999988888999999998877665554443 899999999999999988888999999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCC
Q 009494 288 FVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP 347 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 347 (533)
||+||||++.+++|...+..++..+ +..|++++|||+++.+..+.+.++.++..+.+...
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999888 57899999999999999999999999988776543
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.1e-33 Score=297.20 Aligned_cols=318 Identities=19% Similarity=0.205 Sum_probs=245.8
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|..+.-.+..|+ |+.+.||+|||+++.+|++...+. |..+.|++|++.||.|-.+++..
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~----------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI----------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc----------CCceEEEeccHHHHHhHHHHHHH
Confidence 465 68999999998888887 899999999999999999876543 56699999999999999999999
Q ss_pred HcCCCCCeEEEEEcC--------------------------------------------------cchHHHHHHHHcCCc
Q 009494 233 LGKGLPFKTALVVGG--------------------------------------------------DAMARQVYRIQQGVE 262 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~ 262 (533)
+...+|+++.+++.. .+..+ .+-.-.++
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCC
Confidence 999999999999882 11111 11122379
Q ss_pred eeecCHHHH-HHHHHcC------CCCCCCeeEEEEecchhhhh-cC---------------cHH----------------
Q 009494 263 LIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ-RG---------------FRD---------------- 303 (533)
Q Consensus 263 Iii~Tp~~l-~~~l~~~------~~~l~~~~~vVvDEah~~~~-~~---------------~~~---------------- 303 (533)
|+++|..-| .++|+.+ ......+.+.||||+|.++= .. ...
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999988 6777643 22356789999999998761 00 000
Q ss_pred ----------------HHHHH------------------HHhC-------------------------------------
Q 009494 304 ----------------QVMQI------------------FRAI------------------------------------- 312 (533)
Q Consensus 304 ----------------~~~~i------------------~~~~------------------------------------- 312 (533)
.++.+ ...+
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 00000 0000
Q ss_pred -------------------------------CCCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceE-EEEE
Q 009494 313 -------------------------------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQ-LAIW 360 (533)
Q Consensus 313 -------------------------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~-~~~~ 360 (533)
...++.+||+|...+...+.+.+..+.+.+... .+.....+ ...+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn---kp~~R~d~~d~vy 453 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTH---KPMIRKDHDDLVF 453 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCS---SCCCCEECCCEEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCC---CCcceeecCcEEE
Confidence 001689999999988888888887665544322 22222222 3455
Q ss_pred ecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009494 361 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 440 (533)
Q Consensus 361 ~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~ 440 (533)
.....|...+...+......+.|+||||+|+..++.++..|. ..|+++..+||+..+.++..+.+.++.| .|+|||+
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~-~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLK-KKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHH-TTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHH-HCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 666778888888887765557899999999999999999998 7899999999997666666666677766 5999999
Q ss_pred cccccCCCC--------CccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCH
Q 009494 441 ILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 441 ~~~~Gldi~--------~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~ 491 (533)
+++||+||+ +..+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999998 667999999999999999999999999999999999998873
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.7e-35 Score=317.90 Aligned_cols=288 Identities=18% Similarity=0.228 Sum_probs=210.0
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCC
Q 009494 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPF 239 (533)
Q Consensus 160 p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~ 239 (533)
|.|.......+.+++++++||||||||+. ++..+.. .+.++|++|||+||.|+++.++.. ++
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~----------~~~gl~l~PtR~LA~Qi~~~l~~~----g~ 204 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFS----------AKSGVYCGPLKLLAHEIFEKSNAA----GV 204 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHH----------SSSEEEEESSHHHHHHHHHHHHHT----TC
T ss_pred hhhhCHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh----------cCCeEEEeCHHHHHHHHHHHHHhc----CC
Confidence 34444445567899999999999999983 3333332 133599999999999999998875 56
Q ss_pred eEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC--CCcE
Q 009494 240 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS--LPQI 317 (533)
Q Consensus 240 ~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~--~~q~ 317 (533)
.+..++|+..... ..-....+++++|++.+. ....+++||+||+|++++.+|+..+..++..++ ..++
T Consensus 205 ~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~i 274 (677)
T 3rc3_A 205 PCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHL 274 (677)
T ss_dssp CEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEE
T ss_pred cEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEE
Confidence 7888888765410 000012566777765431 246789999999999999999999999988885 5689
Q ss_pred EEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHH
Q 009494 318 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLL 397 (533)
Q Consensus 318 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l 397 (533)
+++|||.+. +..+.........+... .... ... ..... +..+. ...+..+|||+++..++.+
T Consensus 275 l~~SAT~~~-i~~l~~~~~~~~~v~~~-~r~~---~l~----~~~~~------l~~l~---~~~~g~iIf~~s~~~ie~l 336 (677)
T 3rc3_A 275 CGEPAAIDL-VMELMYTTGEEVEVRDY-KRLT---PIS----VLDHA------LESLD---NLRPGDCIVCFSKNDIYSV 336 (677)
T ss_dssp EECGGGHHH-HHHHHHHHTCCEEEEEC-CCSS---CEE----ECSSC------CCSGG---GCCTTEEEECSSHHHHHHH
T ss_pred EeccchHHH-HHHHHHhcCCceEEEEe-eecc---hHH----HHHHH------HHHHH---hcCCCCEEEEcCHHHHHHH
Confidence 999999643 66666655444333222 1110 100 00000 00111 1134569999999999999
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhc--CCCcEEEEcccccccCCCCCccEEEEcCC--------------CC
Q 009494 398 SNAISVTTGMKALSIHGEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDM--------------PN 461 (533)
Q Consensus 398 ~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~--g~~~VLvaT~~~~~Gldi~~v~~VI~~d~--------------p~ 461 (533)
++.|. ..++.+..+||+|++.+|..+++.|++ |.++|||||+++++|+|+ ++++||+++. |.
T Consensus 337 a~~L~-~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~ 414 (677)
T 3rc3_A 337 SRQIE-IRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPI 414 (677)
T ss_dssp HHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBC
T ss_pred HHHHH-hcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccC
Confidence 99998 678999999999999999999999999 889999999999999999 8999999998 78
Q ss_pred CHhHHHHhhccccCCCCc---cEEEEEecCcCHHHHHH
Q 009494 462 SIKEYVHQIGRASQMGDE---GTAIVFVNEENKNLFQE 496 (533)
Q Consensus 462 s~~~y~qriGR~gR~g~~---g~~~~~~~~~~~~~~~~ 496 (533)
|..+|+||+|||||.|.. |.|+.+.. .+...+.+
T Consensus 415 s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~ 451 (677)
T 3rc3_A 415 TTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKE 451 (677)
T ss_dssp CHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHH
T ss_pred CHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHH
Confidence 999999999999999964 66666544 34333333
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5.4e-34 Score=266.52 Aligned_cols=203 Identities=34% Similarity=0.579 Sum_probs=184.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEE
Q 009494 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+|+++++++.+.+.+.+.||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.... ....++++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ----ERGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----CTTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----ccCCCCcEEE
Confidence 689999999999999999999999999999999999999999999999999999999998765311 1245788999
Q ss_pred EcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchh
Q 009494 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~ 295 (533)
++||++|+.|+.+.++++... +++..++||.....+...+..+++|+|+||+++.+.+.+....+.++++||+||||+
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 999999999999999998765 678889999988888788888899999999999999998888899999999999999
Q ss_pred hhhcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEEe
Q 009494 296 MLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~ 344 (533)
+.+++|...+..++..++ ..|++++|||+++.++.+.+.++.+|..+.+
T Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999998884 7899999999999999999999999988765
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-34 Score=268.78 Aligned_cols=210 Identities=30% Similarity=0.510 Sum_probs=181.3
Q ss_pred cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccC
Q 009494 127 GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 206 (533)
Q Consensus 127 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 206 (533)
+...+....+|+++++++.+.++|.+.||..|+|+|.++++.++.++++++++|||+|||++|++|++..+..
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------- 78 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------- 78 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-------
Confidence 3444455567999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCCC-CCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCC
Q 009494 207 NQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 207 ~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
...++++||++||++|+.|+++.++++.... ++++..++||.....+...+.. .++|+|+||+++.+++.+....+.+
T Consensus 79 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 79 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 1345689999999999999999999998776 6889999999887777666665 4799999999999999988888999
Q ss_pred eeEEEEecchhhhh-cCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhhCCCeEEEE
Q 009494 285 IRMFVLDEVDCMLQ-RGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVS 343 (533)
Q Consensus 285 ~~~vVvDEah~~~~-~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 343 (533)
+++||+||||++.+ .+|...+..++..++ ..|++++|||+++.++.+++.++.+|..+.
T Consensus 159 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999999987 578888988988874 789999999999999999999999988764
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=276.66 Aligned_cols=202 Identities=30% Similarity=0.522 Sum_probs=179.0
Q ss_pred cCcccCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCce
Q 009494 135 LSFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 135 ~~f~~~~--l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.+|++++ +++.+++.|...||..|+|+|.++++.++.+++++++||||||||++|++|++..+...+.. ...+++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~~ 128 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM---PRNGTG 128 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC---GGGCCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc---ccCCce
Confidence 3566666 99999999999999999999999999999999999999999999999999999988753211 134678
Q ss_pred EEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcC-CCCCCCeeEEEEe
Q 009494 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~-~~~l~~~~~vVvD 291 (533)
+||++||++|+.|+++.++++....+..+..++||.....+...+..+++|+|+||+++.+.+... .+.+.++++||+|
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999999988889999999999998888888889999999999999988775 4678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhC-CCCcEEEEeccCCHHHHHHHHhhCCCe
Q 009494 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDI 339 (533)
Q Consensus 292 Eah~~~~~~~~~~~~~i~~~~-~~~q~l~~SAT~~~~~~~l~~~~~~~~ 339 (533)
|||++.+++|...+..++..+ ..+|+++||||+++.++.+++.++.++
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999998 468999999999999999999887643
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=305.49 Aligned_cols=383 Identities=14% Similarity=0.181 Sum_probs=256.5
Q ss_pred CCCCCccccCccccCCcCc-CCCCCCHHHHHHHHHhcCceee---cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHH
Q 009494 86 ERLPATDECFYVRESDENS-GFQSLTIGQTDSLRKRLEINVK---GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPV 161 (533)
Q Consensus 86 ~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~---~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~p~ 161 (533)
..+-.|..-.|....++.. .+..+..+.++.+..+...... ....+.....|..+...+... .-..++|+
T Consensus 167 ~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~y 240 (800)
T 3mwy_W 167 QYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDF 240 (800)
T ss_dssp BCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTH
T ss_pred EEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHH
Confidence 4556666667877777532 2334566777777665432111 111122222344332222111 11378999
Q ss_pred HHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCC
Q 009494 162 QMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 162 Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
|.+++.++. .++++|++.+||+|||++++..+...+.. . .....+||||| .+|+.||.+++.++...
T Consensus 241 Q~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~-~------~~~~~~LIV~P-~sll~qW~~E~~~~~p~- 311 (800)
T 3mwy_W 241 QLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA-R------RQNGPHIIVVP-LSTMPAWLDTFEKWAPD- 311 (800)
T ss_dssp HHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH-H------SCCSCEEEECC-TTTHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh-c------CCCCCEEEEEC-chHHHHHHHHHHHHCCC-
Confidence 999998776 78899999999999999865554433222 1 33456899999 57789999999999754
Q ss_pred CCeEEEEEcCcchHHHHHHH------------HcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHH
Q 009494 238 PFKTALVVGGDAMARQVYRI------------QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQV 305 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l------------~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~ 305 (533)
+++....|+.......... ....+|+|+|++.+...... +....+++||+||||++.+.+ ...
T Consensus 312 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~ 386 (800)
T 3mwy_W 312 -LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSL 386 (800)
T ss_dssp -CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHH
T ss_pred -ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHH
Confidence 5666666655544433322 12478999999999653322 223468999999999996543 456
Q ss_pred HHHHHhCCCCcEEEEeccCC----HHHHHHHHhhCC------------------------------CeEEEEeCCC-CCC
Q 009494 306 MQIFRAISLPQILMYSATIS----QEVEKMSSSISK------------------------------DIVVVSVGKP-NMP 350 (533)
Q Consensus 306 ~~i~~~~~~~q~l~~SAT~~----~~~~~l~~~~~~------------------------------~~~~i~~~~~-~~~ 350 (533)
...+..+.....+++|||+- .++..+...+.. ..+.-..... ...
T Consensus 387 ~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 387 YESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 66777777788899999972 122222221111 1111000000 000
Q ss_pred CcCceEEEEEec--------------------------------------------------------------------
Q 009494 351 NKAVKQLAIWVE-------------------------------------------------------------------- 362 (533)
Q Consensus 351 ~~~v~~~~~~~~-------------------------------------------------------------------- 362 (533)
.+........+.
T Consensus 467 LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~ 546 (800)
T 3mwy_W 467 LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTREN 546 (800)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHH
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHH
Confidence 111111111111
Q ss_pred -------chhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCC--
Q 009494 363 -------SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV-- 433 (533)
Q Consensus 363 -------~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~-- 433 (533)
...|...|.+++......+.++|||+.....++.+..+|. ..|+.+..+||+++..+|..+++.|+++..
T Consensus 547 ~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~-~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~ 625 (800)
T 3mwy_W 547 VLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS-IKGINFQRLDGTVPSAQRRISIDHFNSPDSND 625 (800)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH-HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSC
T ss_pred HHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCc
Confidence 1234455666666666677899999999999999999998 779999999999999999999999999655
Q ss_pred -cEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEE--EecCc
Q 009494 434 -PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV--FVNEE 489 (533)
Q Consensus 434 -~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~--~~~~~ 489 (533)
.+|++|.+++.|+|++.+++||+||+|+|+..+.|++||++|.|+...+.+ |+...
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 489999999999999999999999999999999999999999998765544 44443
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-31 Score=288.14 Aligned_cols=322 Identities=12% Similarity=0.148 Sum_probs=220.0
Q ss_pred CCCHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009494 157 MPTPVQMQAIPSAL---------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
.++|+|.+++..+. .++..|++.+||+|||+.++..+...+...+. ......++|||+|+ +|+.||.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~---~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD---CKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT---SSCSCSCEEEEECH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc---ccCCCCcEEEEecH-HHHHHHH
Confidence 68999999999874 45678999999999999876655544322110 11123569999997 8889999
Q ss_pred HHHHHHcCCCCCeEEEEEcCcchHH--HHHHHHc------CCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhc
Q 009494 228 EQAKLLGKGLPFKTALVVGGDAMAR--QVYRIQQ------GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~ 299 (533)
++++++... .+.++.+++|..... ....... ..+|+|+|++.+.... ..+....+++||+||||++.+.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh
Confidence 999999765 466777777654322 1122221 3789999999986532 3344567899999999999765
Q ss_pred CcHHHHHHHHHhCCCCcEEEEeccCCHHH-------------------HHHHHhh-------------------------
Q 009494 300 GFRDQVMQIFRAISLPQILMYSATISQEV-------------------EKMSSSI------------------------- 335 (533)
Q Consensus 300 ~~~~~~~~i~~~~~~~q~l~~SAT~~~~~-------------------~~l~~~~------------------------- 335 (533)
. ......+..+...+.+++|||+-..- ..+.+.+
T Consensus 208 ~--~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 208 D--NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp C--HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred h--hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 4 34445556667889999999973210 0000000
Q ss_pred -----CCCeEEEEeCCC--CCCCcCceEEEEEec----------------------------------------------
Q 009494 336 -----SKDIVVVSVGKP--NMPNKAVKQLAIWVE---------------------------------------------- 362 (533)
Q Consensus 336 -----~~~~~~i~~~~~--~~~~~~v~~~~~~~~---------------------------------------------- 362 (533)
+... .+.-... ....+.......++.
T Consensus 286 ~L~~~l~~~-~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 286 ELISIVNRC-LIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHH-EECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHH-HHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 0000 0000000 000011111111111
Q ss_pred --------------------------------chhHHHHHHHHHhhcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCCeE
Q 009494 363 --------------------------------SNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 363 --------------------------------~~~k~~~l~~~l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~ 409 (533)
...|...+..++.... ..+.++|||++++..++.+...|. ..|+.+
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~-~~g~~~ 443 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR-NRRYLY 443 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH-HHTCCE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH-HCCCCE
Confidence 0112222222222221 236789999999999999999998 789999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEE--
Q 009494 410 LSIHGEKPMKERREIMRSFLVGEVP---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV-- 484 (533)
Q Consensus 410 ~~~h~~~~~~er~~~~~~f~~g~~~---VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~-- 484 (533)
..+||+++..+|..+++.|++|... +|++|+++++|+|++.+++||+||+|+++..|.|++||++|.|+...+.+
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999999999999999998764 89999999999999999999999999999999999999999998765444
Q ss_pred EecCc
Q 009494 485 FVNEE 489 (533)
Q Consensus 485 ~~~~~ 489 (533)
|+...
T Consensus 524 lv~~~ 528 (644)
T 1z3i_X 524 LLSTG 528 (644)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 45544
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=8.7e-32 Score=302.15 Aligned_cols=312 Identities=13% Similarity=0.110 Sum_probs=216.0
Q ss_pred CCCHHHHHHHHHHhC--------------CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 157 MPTPVQMQAIPSALS--------------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+.. ....+++|||+|+++|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-------~~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-------LDFIDKVFFVVDRKDL 342 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-------CTTCCEEEEEECGGGC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-------cCCCceEEEEeCcHHH
Confidence 599999999999875 368999999999999997 566544321 1234689999999999
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHH-cCCceeecCHHHHHHHHHcCC--CCCCCeeEEEEecchhhhhc
Q 009494 223 CIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 223 ~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iii~Tp~~l~~~l~~~~--~~l~~~~~vVvDEah~~~~~ 299 (533)
+.|+.+.++.+.... +.++.+.......+. .+.+|+|+||++|...+.... ..+..+.+||+||||++..
T Consensus 343 ~~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 343 DYQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp CHHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 999999999886531 234555555555554 468999999999998876542 2456789999999999763
Q ss_pred CcHHHHHHHHHhCCCCcEEEEeccCCHHH--------HH--------------HHHhhCCCeEEEEeCCCCCCC------
Q 009494 300 GFRDQVMQIFRAISLPQILMYSATISQEV--------EK--------------MSSSISKDIVVVSVGKPNMPN------ 351 (533)
Q Consensus 300 ~~~~~~~~i~~~~~~~q~l~~SAT~~~~~--------~~--------------l~~~~~~~~~~i~~~~~~~~~------ 351 (533)
...+..+...++..++++||||+.... .. +...++.++ .+.........
T Consensus 416 --~~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~-~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 --GEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKF-KVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp --HHHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCE-EEEECCCCGGGHHHHTC
T ss_pred --hHHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCe-EEEEEeccchhhhcccc
Confidence 345667788888899999999987421 11 111122222 11111100000
Q ss_pred -c-----CceEEEEEecchhHHHHHHHHHhh----cc------CCCCCeEEEEcchhhHHHHHHHHHhhc----------
Q 009494 352 -K-----AVKQLAIWVESNKKKQKLFDILMS----KQ------HFTPPAVVYVGSRLGADLLSNAISVTT---------- 405 (533)
Q Consensus 352 -~-----~v~~~~~~~~~~~k~~~l~~~l~~----~~------~~~~~~LVf~~s~~~a~~l~~~L~~~~---------- 405 (533)
. .+.+. ..+....+...+...+.. .. ..+.+++|||+|+.+|..+++.|.+..
T Consensus 493 ~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 493 TDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred ccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 00000 000112223333332221 11 123579999999999999999997432
Q ss_pred -CCeE-EEEeCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCc
Q 009494 406 -GMKA-LSIHGE----------K----------PM-----------------------------KERREIMRSFLVGEVP 434 (533)
Q Consensus 406 -~~~~-~~~h~~----------~----------~~-----------------------------~er~~~~~~f~~g~~~ 434 (533)
++++ .++|++ + ++ .+|..+++.|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 1444 455542 2 22 1488899999999999
Q ss_pred EEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCc----cEEEEEecC
Q 009494 435 VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE----GTAIVFVNE 488 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~----g~~~~~~~~ 488 (533)
|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|.+.
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999999999999999 788999999999999999999998764 778877753
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=3.5e-29 Score=267.64 Aligned_cols=320 Identities=19% Similarity=0.197 Sum_probs=245.4
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+ +|+++|..+++.+++|+ ++.+.||+|||++|.+|++...+. +..++|++||++||.|.++++.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~----------G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT----------GKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT----------CSCCEEEESSHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHH
Confidence 3699 99999999999999998 999999999999999999765442 4569999999999999999999
Q ss_pred HHcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHH-HHHHHcCC------CCCC---CeeEEEEecchhhh-hcC
Q 009494 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELD---DIRMFVLDEVDCML-QRG 300 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l-~~~l~~~~------~~l~---~~~~vVvDEah~~~-~~~ 300 (533)
.+...+++++.+++||.+... .+...+++|+|+||++| .+++..+- +.++ .+.++|+||+|+|+ +.+
T Consensus 142 ~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 142 PVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp HHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred HHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 999999999999999987443 44556799999999999 89888762 4577 89999999999987 211
Q ss_pred c---------------HHHHHHHHHhCC----------------------------------------------------
Q 009494 301 F---------------RDQVMQIFRAIS---------------------------------------------------- 313 (533)
Q Consensus 301 ~---------------~~~~~~i~~~~~---------------------------------------------------- 313 (533)
. ...+..++..++
T Consensus 220 rtPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~ 299 (997)
T 2ipc_A 220 RTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENME 299 (997)
T ss_dssp TSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHH
T ss_pred CCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHH
Confidence 0 011111111110
Q ss_pred ------------------------------------------------------------------------------CC
Q 009494 314 ------------------------------------------------------------------------------LP 315 (533)
Q Consensus 314 ------------------------------------------------------------------------------~~ 315 (533)
..
T Consensus 300 l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~ 379 (997)
T 2ipc_A 300 LAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYE 379 (997)
T ss_dssp HHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhCh
Confidence 01
Q ss_pred cEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHH
Q 009494 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 316 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~ 395 (533)
.+.+||+|...+...+.+.|..+.+.|....+..... .....+.....|...+.+-+......+.|+||++.|.+.++
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPTn~p~~R~D--~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKD--FPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSE 457 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCEEECCCSSCCCCEE--EEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCCEEEcCCCCCccccc--CCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHH
Confidence 5788999988888888888877766554433332221 22334455667777888777777677899999999999999
Q ss_pred HHHHHHHh------------------------------------------------------------------------
Q 009494 396 LLSNAISV------------------------------------------------------------------------ 403 (533)
Q Consensus 396 ~l~~~L~~------------------------------------------------------------------------ 403 (533)
.|+..|..
T Consensus 458 ~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 537 (997)
T 2ipc_A 458 RLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTL 537 (997)
T ss_dssp HHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhh
Confidence 99999981
Q ss_pred ---hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCc-------------------c---------
Q 009494 404 ---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV-------------------R--------- 452 (533)
Q Consensus 404 ---~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v-------------------~--------- 452 (533)
..|++.-++++.....|-+.+-+.=+.| .|-|||++++||.||.-- .
T Consensus 538 ~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (997)
T 2ipc_A 538 AVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKK 615 (997)
T ss_dssp HHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHH
T ss_pred HHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccc
Confidence 4567777777776544433333322223 499999999999998633 1
Q ss_pred ----------------------------------------------EEEEcCCCCCHhHHHHhhccccCCCCccEEEEEe
Q 009494 453 ----------------------------------------------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 453 ----------------------------------------------~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~ 486 (533)
+||--..+.|-..-.|--||+||.|.+|.+..|+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~L 695 (997)
T 2ipc_A 616 MVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYV 695 (997)
T ss_dssp HHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEE
T ss_pred ccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEE
Confidence 7888888999999999999999999999999999
Q ss_pred cCcC
Q 009494 487 NEEN 490 (533)
Q Consensus 487 ~~~~ 490 (533)
+-.|
T Consensus 696 SLeD 699 (997)
T 2ipc_A 696 SFDD 699 (997)
T ss_dssp ESSS
T ss_pred ECCh
Confidence 8766
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.6e-27 Score=259.05 Aligned_cols=178 Identities=17% Similarity=0.238 Sum_probs=137.9
Q ss_pred CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhh
Q 009494 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 314 ~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~ 393 (533)
..|++++|||++...... ................+. +.......+...++..+......+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDPL----VRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCCe----EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 578999999998754222 111122211111111111 222233445566666666655557799999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC-----CCCHhHHHH
Q 009494 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 468 (533)
Q Consensus 394 a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~-----p~s~~~y~q 468 (533)
++.+++.|. ..|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.|...|+|
T Consensus 452 ae~L~~~L~-~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 452 AEELTSFLV-EHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHH-HTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHH-hcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999998 78899999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhccccCCCCccEEEEEecCcCHHHHHHHHHHH
Q 009494 469 QIGRASQMGDEGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 469 riGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 501 (533)
|+||+||.+ .|.+++|+++.+......+.+..
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHH
Confidence 999999985 89999999988776655554443
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=5e-28 Score=222.39 Aligned_cols=176 Identities=25% Similarity=0.455 Sum_probs=143.1
Q ss_pred HhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEE
Q 009494 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~ 412 (533)
..++.+|..+.++........+.+.+..+....|...|.+++... ++++||||+++..++.++..|. ..++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~-~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLL-LKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHH-HcCCcEEEE
Confidence 456778888888877777889999999999999999999888653 4589999999999999999998 779999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc-CH
Q 009494 413 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NK 491 (533)
Q Consensus 413 h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~ 491 (533)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 78
Q ss_pred HHHHHHHHHHHHcCCchhhHH
Q 009494 492 NLFQELVDILKSSGAVRLMTF 512 (533)
Q Consensus 492 ~~~~~l~~~l~~~~~~~~~~~ 512 (533)
..+..+.+.|+..++..+..+
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l 185 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVL 185 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHccCcCCHHH
Confidence 899999999999988754443
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.9e-26 Score=250.55 Aligned_cols=176 Identities=20% Similarity=0.272 Sum_probs=137.4
Q ss_pred CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhh
Q 009494 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 314 ~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~ 393 (533)
..|++++|||++...... ................+. +.......+...++..+......+.++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999998654322 112222222111111111 222233445566666666655567799999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCccEEEEcCC-----CCCHhHHHH
Q 009494 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 468 (533)
Q Consensus 394 a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~-----p~s~~~y~q 468 (533)
++.+++.|. ..|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.|...|+|
T Consensus 458 ae~L~~~L~-~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 458 SEDLTDYLK-EIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHH-HTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHH-hcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999998 77999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred hhccccCCCCccEEEEEecCcCHHHHHHHHH
Q 009494 469 QIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 469 riGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 499 (533)
|+||+||. ..|.+++|+++.+..+...+.+
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 99999998 7899999999887665554443
No 78
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=1.3e-29 Score=169.93 Aligned_cols=54 Identities=63% Similarity=1.106 Sum_probs=51.0
Q ss_pred ccccchhhhhccccCCCCCeeeeecccccccccccCCcccchHHhHHHHhhhhh
Q 009494 19 QSDVKEWSKDQREALPEEPKCVICGRYGEYICDETDDDVCSLECKQKLLCRVAN 72 (533)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 72 (533)
.++||+|||+||||++|||+|++||||||||||+||+||||+|||++++.++..
T Consensus 2 ~~~~~~~sk~Qr~p~pgePvCvvCGryGeYICd~Td~DVCSlECK~~~l~~~~~ 55 (60)
T 2yqp_A 2 SSGSSGFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKE 55 (60)
T ss_dssp CCCCCCSCCCCCCCCTTSCCCSSSSSCCSEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred CCcccchhhhhcCCCCCCceEEEecCccceeecCCCcchhhHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999977654
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=215.21 Aligned_cols=165 Identities=33% Similarity=0.597 Sum_probs=137.0
Q ss_pred CCCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 009494 348 NMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRS 427 (533)
Q Consensus 348 ~~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~ 427 (533)
.....++.|.+..++...|...|.+++.... .+.++||||+++..++.++..|. ..|+.+..+||++++.+|..+++.
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~-~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLY-HEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHH-HTTCCEEEEC--------CHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHH-HcCCceEEEeCCCCHHHHHHHHHH
Confidence 4456789999999999999999999987743 46789999999999999999998 779999999999999999999999
Q ss_pred HhcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCCc
Q 009494 428 FLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAV 507 (533)
Q Consensus 428 f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 507 (533)
|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.+...++.
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhHHhH
Q 009494 508 RLMTFCY 514 (533)
Q Consensus 508 ~~~~~~~ 514 (533)
.+..+..
T Consensus 172 ~~~~l~~ 178 (185)
T 2jgn_A 172 VPSWLEN 178 (185)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 6554444
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=3.4e-26 Score=205.09 Aligned_cols=151 Identities=25% Similarity=0.489 Sum_probs=139.8
Q ss_pred CCCcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 009494 349 MPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF 428 (533)
Q Consensus 349 ~~~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f 428 (533)
....++.+.+..+....|...|.+++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELD-DLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 34556889999999999999999988764 35689999999999999999998 7799999999999999999999999
Q ss_pred hcCCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009494 429 LVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 429 ~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 502 (533)
++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.+...+..+.+.+.
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887764
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.3e-26 Score=205.57 Aligned_cols=151 Identities=28% Similarity=0.504 Sum_probs=132.8
Q ss_pred CceEEEEEecchh-HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC
Q 009494 353 AVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG 431 (533)
Q Consensus 353 ~v~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g 431 (533)
.+.|.+..++... |...|.+++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5778888888777 888888888764 45789999999999999999998 7789999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCC
Q 009494 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 506 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 506 (533)
+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.|.+++|+++.+...+..+.+.++...+
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999988888877655443
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=204.33 Aligned_cols=152 Identities=26% Similarity=0.446 Sum_probs=134.0
Q ss_pred CCcCceEEEEEecchh-HHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 009494 350 PNKAVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF 428 (533)
Q Consensus 350 ~~~~v~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f 428 (533)
....+.|.+..++... |...|.+++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMI-QDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHH-TTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4567889999888766 778888887654 35689999999999999999998 7899999999999999999999999
Q ss_pred hcCCCcEEEEcccccccCCCCCccEEEEcCCC------CCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009494 429 LVGEVPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 429 ~~g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p------~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 502 (533)
++|+++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 999999999999999999999999999999888888877765
Q ss_pred Hc
Q 009494 503 SS 504 (533)
Q Consensus 503 ~~ 504 (533)
..
T Consensus 161 ~~ 162 (175)
T 2rb4_A 161 SS 162 (175)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 83
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1e-25 Score=203.70 Aligned_cols=150 Identities=27% Similarity=0.470 Sum_probs=134.9
Q ss_pred CcCceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhc
Q 009494 351 NKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV 430 (533)
Q Consensus 351 ~~~v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~ 430 (533)
...+.|.+..+....|...|.+++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLV-EQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 356889999999999999999988764 35689999999999999999998 779999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCc-CHHHHHHHHHHHHH
Q 009494 431 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKS 503 (533)
Q Consensus 431 g~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~ 503 (533)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+..
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999876 45666666665543
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.2e-24 Score=203.44 Aligned_cols=147 Identities=22% Similarity=0.410 Sum_probs=132.6
Q ss_pred ceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 009494 354 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 354 v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~ 433 (533)
+.+....+....|...|.+++.... ++++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|..
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLL-RLGHPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC--CSCEEEECSSHHHHHHHHHHHH-HHTCCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 4455666777888888888887543 5799999999999999999998 779999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 434 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 434 ~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.++.
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998888888777654
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=3.4e-24 Score=209.95 Aligned_cols=147 Identities=23% Similarity=0.418 Sum_probs=131.6
Q ss_pred ceEEEEEecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 009494 354 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 354 v~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~ 433 (533)
+.+.+..+....|...|.+++.... .+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~-~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLL-RLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHH-TTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 5677888888889999998887654 6799999999999999999998 779999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHH
Q 009494 434 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 434 ~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 503 (533)
+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.++.
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999998888887777654
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=202.20 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=123.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH-HHHHHHH
Q 009494 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ-VEEQAKL 232 (533)
Q Consensus 154 g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q-~~~~~~~ 232 (533)
+...|+|+|.++++.++.++++++.+|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----TTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----ccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999999999998877654321 1346789999999999999 8888888
Q ss_pred HcCCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCC------CCCCCeeEEEEecchhhhhcCcHHHHH
Q 009494 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD------IELDDIRMFVLDEVDCMLQRGFRDQVM 306 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~------~~l~~~~~vVvDEah~~~~~~~~~~~~ 306 (533)
+... ++++..+.|+.........+..+++|+|+||++|...+.... ..+.++++||+||||++.+.++...+.
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 8765 678888888766555444555678999999999999888753 567889999999999998776555443
Q ss_pred -HHHHhC--------------CCCcEEEEecc
Q 009494 307 -QIFRAI--------------SLPQILMYSAT 323 (533)
Q Consensus 307 -~i~~~~--------------~~~q~l~~SAT 323 (533)
.++... +.++++++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332222 67899999998
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.83 E-value=1.4e-25 Score=202.46 Aligned_cols=149 Identities=28% Similarity=0.459 Sum_probs=133.1
Q ss_pred CceEEEEEecc-hhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC
Q 009494 353 AVKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG 431 (533)
Q Consensus 353 ~v~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g 431 (533)
++.+.+..+.. ..|...|.+++.. ..++++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLR-EAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 35566666766 6677777777754 235689999999999999999998 6789999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHc
Q 009494 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 504 (533)
+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999988888887766543
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.4e-22 Score=214.07 Aligned_cols=302 Identities=17% Similarity=0.213 Sum_probs=169.8
Q ss_pred cCCCCCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009494 153 AGYDMPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 153 ~g~~~p~p~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
.|| .|+|+|.+++.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------------TCEEEEEESCHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------------CCcEEEEcCCHHHHHHHHH
Confidence 367 899999998654 4588999999999999999999998653 4679999999999999998
Q ss_pred HHHHHcCCCCCeEEEEEcCcch--------H------------------------HHH---------------HHHHcCC
Q 009494 229 QAKLLGKGLPFKTALVVGGDAM--------A------------------------RQV---------------YRIQQGV 261 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gg~~~--------~------------------------~~~---------------~~l~~~~ 261 (533)
+++.+ ++++..+.|.... . +.+ .+...++
T Consensus 70 ~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGG----TCCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 88764 3444444432210 0 000 0112457
Q ss_pred ceeecCHHHHHHHHHcCCC-------CCCCeeEEEEecchhhhhcC-----------cHH--------------------
Q 009494 262 ELIVGTPGRLIDLLMKHDI-------ELDDIRMFVLDEVDCMLQRG-----------FRD-------------------- 303 (533)
Q Consensus 262 ~Iii~Tp~~l~~~l~~~~~-------~l~~~~~vVvDEah~~~~~~-----------~~~-------------------- 303 (533)
+|||+|+..|.+-..++.+ .+....++||||||++.+.. +..
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~ 225 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVK 225 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999999999875543222 24678899999999984310 000
Q ss_pred ----------------------------------HHHHHHHh-----------------------------------C-C
Q 009494 304 ----------------------------------QVMQIFRA-----------------------------------I-S 313 (533)
Q Consensus 304 ----------------------------------~~~~i~~~-----------------------------------~-~ 313 (533)
.+..++.. + |
T Consensus 226 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P 305 (540)
T 2vl7_A 226 DYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVP 305 (540)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEeh
Confidence 00000000 0 0
Q ss_pred -------------CCcEEEEeccCCHHHHHHHHhhCCCeEEEEeCCCCCCCcCceEEEEE--ecc--hhH---HHHHHHH
Q 009494 314 -------------LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW--VES--NKK---KQKLFDI 373 (533)
Q Consensus 314 -------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~v~~~~~~--~~~--~~k---~~~l~~~ 373 (533)
...+|++|||+++.. . +..++ ........ .....+.. +.. ..+ ...+.+.
T Consensus 306 ~~~~~~l~~~~~~~~~~IltSATL~p~~-~----~~~~f-~~~~~~~~----g~~~~~~~~~l~s~f~~r~~~~~~~~~~ 375 (540)
T 2vl7_A 306 SDVNQLIEDALNVKTFKVLMSGTLPESL-T----LTNSY-KIVVNESY----GRGEYYYCPNVTSELRKRNSNIPIYSIL 375 (540)
T ss_dssp SCHHHHHHHHTCCSSCEEEEESSCCTTC-C----CTTEE-EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCCeEEEcccCCCCc-c----cchhc-CCchhhee----cCCcceeccccCCCcccccCHHHHHHHH
Confidence 001366666665510 0 00000 01110000 00111110 110 111 1334444
Q ss_pred Hhhcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEE--EcccccccCCCCC
Q 009494 374 LMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV--ATGILGRGVELLG 450 (533)
Q Consensus 374 l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLv--aT~~~~~Gldi~~ 450 (533)
+.... ...+.+|||++|...++.+++.+. . .+ ..+++.. .+|..+++.|+++. .||+ +|+.+++|||+|+
T Consensus 376 l~~~~~~~~g~~lvff~S~~~~~~v~~~l~-~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~ 448 (540)
T 2vl7_A 376 LKRIYENSSKSVLVFFPSYEMLESVRIHLS-G--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFRE 448 (540)
T ss_dssp HHHHHHTCSSEEEEEESCHHHHHHHHTTCT-T--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC------------
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHhc-c--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCC
Confidence 43322 234679999999999999998886 2 33 4556654 46889999999865 6777 7899999999997
Q ss_pred ----ccEEEEcCCCCC-H-----------------------------hHHHHhhccccCCCCccEEEEEecCc
Q 009494 451 ----VRQVIIFDMPNS-I-----------------------------KEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 451 ----v~~VI~~d~p~s-~-----------------------------~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
+++||++++|.. + ..+.|.+||+-|....--++++++++
T Consensus 449 ~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 449 KENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp ---CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred CcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 899999998841 1 23468999999976554456666653
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=190.55 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=133.7
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009494 147 LQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 147 ~~~l~~~g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.+.+.......++++|.++++.+..|+++++.||||||||+++.++++..+.... ...+..+++++|+++++.|+
T Consensus 51 ~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-----~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-----RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-----CGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-----CCCceEEEEeccchHHHHHH
Confidence 3333333344578999999999999999999999999999998888887665421 12346899999999999999
Q ss_pred HHHHHHHcC-CCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhh-hhcCcH-H
Q 009494 227 EEQAKLLGK-GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM-LQRGFR-D 303 (533)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~-~~~~~~-~ 303 (533)
.+.+..... ..+..+.......... ...+++|+|+||++|.+.+.. .+.++++||+||||++ ++.+|. .
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHH
Confidence 887765433 3344443332222111 013478999999999999876 4789999999999986 777766 5
Q ss_pred HHHHHHHhCCCCcEEEEeccCCHHHHHHHHhhCCCeE
Q 009494 304 QVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIV 340 (533)
Q Consensus 304 ~~~~i~~~~~~~q~l~~SAT~~~~~~~l~~~~~~~~~ 340 (533)
.+..++...+..|++++|||++.+. +.+.+...++
T Consensus 198 ~l~~i~~~~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 198 VLRDVVQAYPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHCTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHhhCCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 6777777778899999999999865 6677666554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=4.8e-23 Score=201.68 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+|+|.++++.++.+++.++++|||+|||+++++++...+.. .+.++||++||++|+.||.+.++++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 8999999999999988889999999999999998877665432 2347999999999999999999999776
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCC
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~ 315 (533)
.+..+..+++|..... ....+.+|+|+||+++... ....+.++++||+||||++.+ ..+..++..+ ...
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCC
Confidence 6678888888865532 1224589999999987432 234567899999999999864 4777888887 689
Q ss_pred cEEEEeccCCHHHH
Q 009494 316 QILMYSATISQEVE 329 (533)
Q Consensus 316 q~l~~SAT~~~~~~ 329 (533)
+++++|||+++...
T Consensus 254 ~~l~lSATp~~~~~ 267 (282)
T 1rif_A 254 FKFGLSGSLRDGKA 267 (282)
T ss_dssp EEEEECSSCCTTST
T ss_pred eEEEEeCCCCCcch
Confidence 99999999986543
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=1.7e-20 Score=200.49 Aligned_cols=308 Identities=16% Similarity=0.144 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSA----LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+|+|.+++..+ ..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.++++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-------------~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-------------KPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-------------CSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-------------CCeEEEEcCCHHHHHHHHHHHHH
Confidence 6899999987754 478999999999999999999999861 56799999999999999999998
Q ss_pred HcCCCCCeEEEEEcCcch---------------------------------HHHH------------------HHHHcCC
Q 009494 233 LGKGLPFKTALVVGGDAM---------------------------------ARQV------------------YRIQQGV 261 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~ 261 (533)
+....++++..+.|+... .... .....++
T Consensus 70 l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 70 IREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred HhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 877778888887774321 1111 2233568
Q ss_pred ceeecCHHHHHHHHHcCCCCC-CCeeEEEEecchhhhhcCc---------------------------------------
Q 009494 262 ELIVGTPGRLIDLLMKHDIEL-DDIRMFVLDEVDCMLQRGF--------------------------------------- 301 (533)
Q Consensus 262 ~Iii~Tp~~l~~~l~~~~~~l-~~~~~vVvDEah~~~~~~~--------------------------------------- 301 (533)
+|||+||+.|++...+..+.+ ....++||||||++.+ ..
T Consensus 150 dIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp SEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred CEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988765554433 4778999999999876 20
Q ss_pred ----------------HHHHHHH----------------------------HH--------------hC-----------
Q 009494 302 ----------------RDQVMQI----------------------------FR--------------AI----------- 312 (533)
Q Consensus 302 ----------------~~~~~~i----------------------------~~--------------~~----------- 312 (533)
...+..+ +. .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 0000000 00 01
Q ss_pred ----CC-CcEEEEeccCCHHHHHHHHhhCCC-eEE-----EEeCCCCCCCcCceEEEEEe--cc------hhHHHHHHHH
Q 009494 313 ----SL-PQILMYSATISQEVEKMSSSISKD-IVV-----VSVGKPNMPNKAVKQLAIWV--ES------NKKKQKLFDI 373 (533)
Q Consensus 313 ----~~-~q~l~~SAT~~~~~~~l~~~~~~~-~~~-----i~~~~~~~~~~~v~~~~~~~--~~------~~k~~~l~~~ 373 (533)
.. ..+|++|||+.+ ...+...+..+ ... +..+.+. ..+ ...+... .. ......+.+.
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~-~~l~v~~~~~~~~~~r~~~~~~~l~~~ 384 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGS-YECYIGVDVTSKYDMRSDNMWKRYADY 384 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCE-EEEEEECSCCCCTTTCCHHHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCc-eEEEEeCCCCCccccCCHHHHHHHHHH
Confidence 12 678999999987 55566665544 221 1122221 111 1122211 11 1112344444
Q ss_pred Hhhcc-CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc--ccccccCCCC-
Q 009494 374 LMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT--GILGRGVELL- 449 (533)
Q Consensus 374 l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT--~~~~~Gldi~- 449 (533)
+.... ...+.+|||++|....+.+++. .+.++..=..+++ +...++.|+.+.-.||++| +.+.+|||+|
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 44322 2346899999999999988862 3444443223444 4557777854444899998 6999999999
Q ss_pred ----CccEEEEcCCCCC---------------------H---------hHHHHhhccccCCCCccEEEEEecCc
Q 009494 450 ----GVRQVIIFDMPNS---------------------I---------KEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 450 ----~v~~VI~~d~p~s---------------------~---------~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
.++.||+..+|.. . ....|.+||+-|..+.--++++++++
T Consensus 458 ~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 4788998776531 1 11358899999986665566677664
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=2.8e-19 Score=169.95 Aligned_cols=139 Identities=22% Similarity=0.164 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..|+++|.+++..++.++++++++|||+|||.+++.++... +.++||++|+++|+.||.+.++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------------CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 47999999999999999999999999999999987766531 456999999999999999988874
Q ss_pred CCCCe-EEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCC
Q 009494 236 GLPFK-TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 314 (533)
Q Consensus 236 ~~~~~-~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~ 314 (533)
++. +..+.|+.. ...+|+|+||+.+...... ...++++||+||+|++.+..+ ..++..++.
T Consensus 157 --~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~~ 218 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSIA 218 (237)
T ss_dssp --CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCCC
T ss_pred --CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhccC
Confidence 566 666666543 2479999999998765542 124689999999999987654 356677788
Q ss_pred CcEEEEeccCCHH
Q 009494 315 PQILMYSATISQE 327 (533)
Q Consensus 315 ~q~l~~SAT~~~~ 327 (533)
.+++++|||+++.
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 9999999999863
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=4.3e-19 Score=171.66 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=100.4
Q ss_pred cchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcC-CCc-EEEEc
Q 009494 362 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVAT 439 (533)
Q Consensus 362 ~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g-~~~-VLvaT 439 (533)
....|...|.+++......+.++||||+++..++.+...|....|+.+..+||++++.+|..+++.|++| ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567888888888876556789999999999999999999844689999999999999999999999999 777 68999
Q ss_pred ccccccCCCCCccEEEEcCCCCCHhHHHHhhccccCCCCccEE--EEEecCc
Q 009494 440 GILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 489 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~~d~p~s~~~y~qriGR~gR~g~~g~~--~~~~~~~ 489 (533)
+++++|+|++.+++||+||+||++..|.||+||++|.|+.+.+ +.|+...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999998765 4455543
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.78 E-value=7.6e-18 Score=181.44 Aligned_cols=316 Identities=17% Similarity=0.200 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~p~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+|+|.|.+++.. +..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.++++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 589999998864 4589999999999999999999999988753 246899999999999999999998
Q ss_pred HcCCCCCeEEEEEcCcchHH------------------HHH---------------------------------------
Q 009494 233 LGKGLPFKTALVVGGDAMAR------------------QVY--------------------------------------- 255 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~------------------~~~--------------------------------------- 255 (533)
+....+++++.+.|+.+.-- ...
T Consensus 74 l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~ 153 (620)
T 4a15_A 74 LSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEE 153 (620)
T ss_dssp HHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHH
T ss_pred HhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHH
Confidence 87655677777666432000 000
Q ss_pred -----------------HHHcCCceeecCHHHHHHHHHcCC----C-CCCCeeEEEEecchhhhhc--------------
Q 009494 256 -----------------RIQQGVELIVGTPGRLIDLLMKHD----I-ELDDIRMFVLDEVDCMLQR-------------- 299 (533)
Q Consensus 256 -----------------~l~~~~~Iii~Tp~~l~~~l~~~~----~-~l~~~~~vVvDEah~~~~~-------------- 299 (533)
+....++|||+.+..|++...+.. + ....-.+|||||||.+.+.
T Consensus 154 l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l 233 (620)
T 4a15_A 154 FYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESL 233 (620)
T ss_dssp HHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHH
T ss_pred HHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHH
Confidence 111245799999988765443211 1 1234578999999987531
Q ss_pred ------------Cc------HHH--------HH-----------------------------------H-------HHH-
Q 009494 300 ------------GF------RDQ--------VM-----------------------------------Q-------IFR- 310 (533)
Q Consensus 300 ------------~~------~~~--------~~-----------------------------------~-------i~~- 310 (533)
.+ ... +. . +..
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 313 (620)
T 4a15_A 234 NRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEY 313 (620)
T ss_dssp HHHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 00 000 00 0 000
Q ss_pred -------h--------------------CC-------------------------------CCcEEEEeccCCHHHHHHH
Q 009494 311 -------A--------------------IS-------------------------------LPQILMYSATISQEVEKMS 332 (533)
Q Consensus 311 -------~--------------------~~-------------------------------~~q~l~~SAT~~~~~~~l~ 332 (533)
. -. ...+|++|||+.+ ...+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~ 392 (620)
T 4a15_A 314 VENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYS 392 (620)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHH
T ss_pred HHhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHH
Confidence 0 00 1135889999986 55555
Q ss_pred HhhCCCeEEEEeCCCCCCCcCceEEEEE--ec------chhHHHHHHHHHhhcc-CCCCCeEEEEcchhhHHHHHHHHHh
Q 009494 333 SSISKDIVVVSVGKPNMPNKAVKQLAIW--VE------SNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISV 403 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~v~~~~~~--~~------~~~k~~~l~~~l~~~~-~~~~~~LVf~~s~~~a~~l~~~L~~ 403 (533)
..+..+...+..+.+ ....+.. .+.. +. ...-...+.+.+.... ...+.+|||++|....+.+++.|.
T Consensus 393 ~~lGl~~~~~~~~sp-f~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~- 469 (620)
T 4a15_A 393 DITGFEIPFKKIGEI-FPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS- 469 (620)
T ss_dssp HHHCCCCCEEECCCC-SCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC-
T ss_pred HHhCCCceeeecCCC-CCHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH-
Confidence 555443333333332 2222221 1111 11 0111223333333221 235679999999999999998886
Q ss_pred hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEc--ccccccCCCCC--ccEEEEcCCCCC-----------------
Q 009494 404 TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT--GILGRGVELLG--VRQVIIFDMPNS----------------- 462 (533)
Q Consensus 404 ~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT--~~~~~Gldi~~--v~~VI~~d~p~s----------------- 462 (533)
..+.+ ...+++..+|..+++.|+ +.-.||++| +.+.+|+|+|+ ...||+..+|..
T Consensus 470 ~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~ 545 (620)
T 4a15_A 470 FEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKY 545 (620)
T ss_dssp SCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHH
T ss_pred hcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhh
Confidence 33322 445566678999999999 888899997 48999999996 778999887742
Q ss_pred --H----------hHHHHhhccccCCCCccEEEEEecCc
Q 009494 463 --I----------KEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 463 --~----------~~y~qriGR~gR~g~~g~~~~~~~~~ 489 (533)
. ....|.+||+-|..+.--++++++++
T Consensus 546 g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 546 GKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp SCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 1 11369999999987665566666653
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.83 E-value=6e-09 Score=112.02 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchh--HHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKT--ASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT--~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
++.|+++++.++.++.+++.|++|+||| ++++++.+..+. ...+.++++++||..+|.++.+.+......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--------~~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--------DGERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--------hcCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999 455565554331 134568999999999999988877665443
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCc-eeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCC-C
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVE-LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-L 314 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~-Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~-~ 314 (533)
+++..... .+.+.. ....+ ++-.+|+.. . +.........+++||||||+ |++ ...+..++..++ .
T Consensus 223 l~l~~~~~-~~~~~~------~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 223 LPLTDEQK-KRIPED------ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp SSCCSCCC-CSCSCC------CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCCCHHHH-hccchh------hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 33211000 000000 00111 222233321 1 12222233478999999999 544 466778888774 4
Q ss_pred CcEEEEecc
Q 009494 315 PQILMYSAT 323 (533)
Q Consensus 315 ~q~l~~SAT 323 (533)
.+++++.-.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 677777543
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.16 E-value=9.9e-06 Score=84.10 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=50.0
Q ss_pred HHHcCCCCCCHHHHHHHHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 150 IEAAGYDMPTPVQMQAIPSALS-----GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 150 l~~~g~~~p~p~Q~~~i~~~~~-----~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
.....|..+++-|.+++..++. ...+++.|+.|||||.+ +..++..+.. .....+++++||...+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~--------~~~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIS--------TGETGIILAAPTHAAKK 88 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHH--------TTCCCEEEEESSHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHh--------cCCceEEEecCcHHHHH
Confidence 3445688999999999997653 23899999999999975 3445555543 11246999999988877
Q ss_pred HHHHH
Q 009494 225 QVEEQ 229 (533)
Q Consensus 225 Q~~~~ 229 (533)
.+.+.
T Consensus 89 ~l~~~ 93 (459)
T 3upu_A 89 ILSKL 93 (459)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.10 E-value=1.3e-05 Score=86.46 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+..+++.|.+++..++.+.-.+|.||+|+|||.+. ..++.++.. ..+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT--------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH--------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999988888899999999999863 344444442 24567999999999999887776543
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.02 E-value=7.1e-06 Score=88.98 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.+++-|.+|+..++..++ .||.||+|+|||.+. .-++.++.. .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVK---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999887664 689999999999864 344444443 3567999999999988887776543
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2e-05 Score=87.03 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999988777899999999999863 3344444431 2467999999999999888877664
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=2.2e-05 Score=83.41 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.+++.|.+++..++.++.+++.|++|+|||.+ +..++..+.. .+.++++++||...+..+.+...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e~~~----- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES---------LGLEVGLCAPTGKAARRLGEVTG----- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh---------cCCeEEEecCcHHHHHHhHhhhc-----
Confidence 57899999999999999999999999999975 3333333322 35679999999988876654321
Q ss_pred CCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHH----HHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhC
Q 009494 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLID----LLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~----~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~ 312 (533)
.. ..|..+++. .+.........+++|||||++.+. ...+..++..+
T Consensus 254 --~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~ 303 (574)
T 3e1s_A 254 --RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAV 303 (574)
T ss_dssp --SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTS
T ss_pred --cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhC
Confidence 10 011111110 011122234568899999999653 34566777776
Q ss_pred CC-CcEEEEe
Q 009494 313 SL-PQILMYS 321 (533)
Q Consensus 313 ~~-~q~l~~S 321 (533)
+. .+++++.
T Consensus 304 ~~~~~lilvG 313 (574)
T 3e1s_A 304 PPGARVLLVG 313 (574)
T ss_dssp CTTCEEEEEE
T ss_pred cCCCEEEEEe
Confidence 53 4555543
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.97 E-value=2.6e-05 Score=85.98 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 155 ~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
...+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.. ..+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHT--------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45689999999999988888899999999999863 444454443 24567999999999988887776543
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.97 E-value=1.6e-05 Score=77.06 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=88.8
Q ss_pred ecchhHHHHHHHHHhhccCCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009494 361 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 440 (533)
Q Consensus 361 ~~~~~k~~~l~~~l~~~~~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~ 440 (533)
+....|...|-.++......+.++|||++.....+.+..++. ..++....+.|.....++. . .++...+.+.|.
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~-~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Llts 178 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLL-GNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSS 178 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHT-TSSCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHh-cCCCceEeCCCCchhhhhh-c----ccCCceEEEEEC
Confidence 345677777777777777778899999999999999999998 7899999999986543221 1 244555655566
Q ss_pred cccccCC-----CCCccEEEEcCCCCCHhHH-HHhhccccCCC--C--ccEEEEEecCcC
Q 009494 441 ILGRGVE-----LLGVRQVIIFDMPNSIKEY-VHQIGRASQMG--D--EGTAIVFVNEEN 490 (533)
Q Consensus 441 ~~~~Gld-----i~~v~~VI~~d~p~s~~~y-~qriGR~gR~g--~--~g~~~~~~~~~~ 490 (533)
..+-|+| +..++.||.||..+++..= +|.+-|+.|.| + .-.++-|+..+-
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6666675 6789999999999998875 89898888873 2 345666666443
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.84 E-value=0.00066 Score=73.49 Aligned_cols=71 Identities=25% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++.. .+..++|.|+.|||||.+..- .+.+++... .....++|++++|+..+.++.+.+....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~-ri~~l~~~~-----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVH-RIAWLMSVE-----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTS-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHH-HHHHHHHhC-----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4688999999973 467799999999999987433 334443311 1123479999999999999988887764
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.60 E-value=0.00058 Score=68.39 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++.-|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--------~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--------SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--------CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6799999999877555678999999999998766555443332 3456799999999999888777776544
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.19 E-value=0.0024 Score=68.19 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+|+|...+..+-..+..++..+-|+|||.+....++..+.. ..+..+++++|++..|..+...++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------~~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--------SSSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--------CCCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 5799999999877556779999999999998766544444432 23567999999999999988888877655
Q ss_pred CC--CeEEEE-EcCcchHHHHHHHHcCCceee--cCHHHHHHHHHcCCCCCCCeeEEEEecchhhhh
Q 009494 237 LP--FKTALV-VGGDAMARQVYRIQQGVELIV--GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 237 ~~--~~~~~~-~gg~~~~~~~~~l~~~~~Iii--~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~ 298 (533)
.+ ++.... .+.... .+.+|..|.+ +.|+.+.- .+.+++|+||+|.+.+
T Consensus 235 ~p~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 235 LPDFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp SCTTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTT
T ss_pred ChHhhccccccCCccEE-----EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCc
Confidence 43 111101 111100 0123444333 33554421 1367899999998754
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.07 E-value=0.0023 Score=64.95 Aligned_cols=107 Identities=21% Similarity=0.167 Sum_probs=64.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
-.++.|+.|+|||.... .+.. ....+|++||++++..|.+.+.+....
T Consensus 163 v~~I~G~aGsGKTt~I~-----~~~~----------~~~~lVlTpT~~aa~~l~~kl~~~~~~----------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL-----SRVN----------FEEDLILVPGRQAAEMIRRRANASGII----------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH-----HHCC----------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------------
T ss_pred EEEEEcCCCCCHHHHHH-----HHhc----------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------------
Confidence 36889999999998532 1111 124799999999998877765322100
Q ss_pred HHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 254 ~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.....-+.|.++++- +.........++|||||+- |.+. ..+..++...+..+++++.-+
T Consensus 211 -----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~---~~l~~l~~~~~~~~vilvGD~ 269 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT---GCVNFLVEMSLCDIAYVYGDT 269 (446)
T ss_dssp -----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH---HHHHHHHHHTTCSEEEEEECT
T ss_pred -----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH---HHHHHHHHhCCCCEEEEecCc
Confidence 112345778776532 2222222358899999998 4433 334444555555666666543
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.02 E-value=0.0029 Score=56.13 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHh---------CCCcEEEEccCCCchhHH
Q 009494 159 TPVQMQAIPSAL---------SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 159 ~p~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~ 188 (533)
.+.|.+++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 455666665543 468899999999999984
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.57 E-value=0.0043 Score=55.48 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|+-.++.|++|+|||..++- ++..+. ..+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~---------~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYK---------LGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHH---------HTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHH---------HCCCeEEEEeecc
Confidence 355678999999999986433 333322 1345688888873
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.56 E-value=0.0022 Score=55.23 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999984
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.26 E-value=0.0087 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
|+=.++.|++|||||...+- ++.++. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~---------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAK---------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH---------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH---------HCCCEEEEEEecc
Confidence 44578899999999986443 333332 3467799999873
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.24 E-value=0.0051 Score=56.64 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=51.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcch
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-.++.|++|+|||++.+-. +.++. ..+.+++++.|...- . ....+...+++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~-~~r~~---------~~g~kVli~~~~~d~-r----~~~~i~srlG~~~--------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR-LHRLE---------YADVKYLVFKPKIDT-R----SIRNIQSRTGTSL--------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH-HHHHH---------HTTCCEEEEEECCCG-G----GCSSCCCCCCCSS---------
T ss_pred CcEEEEEECCCCCcHHHHHHHH-HHHHH---------hcCCEEEEEEeccCc-h----HHHHHHHhcCCCc---------
Confidence 3455788999999999864433 33332 235678888776421 0 0001122222110
Q ss_pred HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhh
Q 009494 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~ 297 (533)
..+-+.+...++..+.... .-.++++|||||++.+.
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1223455566666665432 23458899999999753
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.09 E-value=0.01 Score=53.92 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
|+=.++.+++|||||..++-.+.+.. ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~----------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ----------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----------HCCCEEEEEEeccC
Confidence 34457899999999987544433332 34677999998753
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.11 Score=50.42 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.+.++++.||+|+|||.+. -.++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 4567999999999999863 3344444
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.79 E-value=0.016 Score=63.00 Aligned_cols=71 Identities=23% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.++|-|.+++.. .+..++|.|..|||||.+..-- +.+++... ......+|+++.|+..|.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~r-i~~ll~~~-----~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNK-IAHLIRGC-----GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHH-HHHHHHHH-----CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHH-HHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3678999999999999864433 33333321 01235699999999999999988877643
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.03 Score=51.36 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|+=.++.|++|||||..++-.+.+.. ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~----------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ----------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH----------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH----------HCCCeEEEEeecC
Confidence 455578899999999986544443332 4577899998875
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.75 E-value=0.024 Score=61.97 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 156 ~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
..++|-|.+++.. .+..++|.|..|||||.+..- -+.+++... .-....+|+++.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~-ri~~ll~~~-----~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTH-RIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHH-HHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999976 457899999999999987433 333443311 112356999999999999888877765
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.72 E-value=0.054 Score=53.15 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHH
Q 009494 158 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~p~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~l 190 (533)
.+|||.+++..+. +|+ .+++.||.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876654 443 38999999999998543
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.67 E-value=0.076 Score=51.75 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 45799999999999985
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.58 E-value=0.038 Score=58.86 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHc
Q 009494 157 MPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+ ..+. ..++|.+|+.+-+..+.+ +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~------------~~~~vtAP~~~a~~~l~~----~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA------------GRAIVTAPAKASTDVLAQ----FA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS------------SCEEEECSSCCSCHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH------------hCcEEECCCHHHHHHHHH----Hh
Confidence 689999999998885 3347889999999997544433 3221 126999999876553332 21
Q ss_pred CCCCCeEEEEEcCcchHHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcCcHHHHHHHHHhCCC
Q 009494 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 314 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~ 314 (533)
.. .|-+..|..+.. .....+++|||||=.+ ..+.+..++..
T Consensus 238 ~~-------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~--- 278 (671)
T 2zpa_A 238 GE-------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR--- 278 (671)
T ss_dssp GG-------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT---
T ss_pred hC-------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh---
Confidence 10 144557766432 2345889999999876 35666676653
Q ss_pred CcEEEEeccC
Q 009494 315 PQILMYSATI 324 (533)
Q Consensus 315 ~q~l~~SAT~ 324 (533)
-..++||.|+
T Consensus 279 ~~~v~~~tTv 288 (671)
T 2zpa_A 279 FPRTLLTTTV 288 (671)
T ss_dssp SSEEEEEEEB
T ss_pred CCeEEEEecC
Confidence 2346677775
No 120
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.29 E-value=0.017 Score=52.39 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
.|.-.++.+++|||||...+ -.+.++. ..+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Ll-r~~~r~~---------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELI-RRLRRGI---------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHHHHH---------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHH-HHHHHHH---------HcCCceEEEEeccC
Confidence 35557889999999997543 3333332 23567999999753
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.22 E-value=0.067 Score=53.31 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=22.3
Q ss_pred EEEEecchhhhhcCcHHH-HHHHHHhCCCCcEEEEeccC
Q 009494 287 MFVLDEVDCMLQRGFRDQ-VMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 287 ~vVvDEah~~~~~~~~~~-~~~i~~~~~~~q~l~~SAT~ 324 (533)
+||+||+|.+........ +..++.......+|+.|...
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 899999999876532333 44554444334445554443
No 122
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.18 E-value=0.034 Score=64.59 Aligned_cols=71 Identities=27% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.+|+-|.+++..- +++++|.|..|||||.+.+--++..+.... ..-...++|++++|+..|..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~----~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE----NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS----SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC----CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 5789999999764 889999999999999975444444433210 0113457999999999999888877653
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.18 E-value=0.058 Score=53.67 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=19.6
Q ss_pred CeeEEEEecchhhhhcC-cHHHHHHHHHhC
Q 009494 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI 312 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~-~~~~~~~i~~~~ 312 (533)
...+||+||+|.+.... ....+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 46689999999987652 245555555544
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.15 E-value=0.16 Score=45.54 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999853
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.11 E-value=0.24 Score=44.54 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..-.+||+||+|.+... ....+..++......-.+.+++.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987543 24455555555443333344433
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.10 E-value=0.14 Score=52.24 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=24.5
Q ss_pred CeeEEEEecchhhhhc-CcHHHHHHHHHhC--CCCcEEEEeccCC
Q 009494 284 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATIS 325 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~-~~~~~~~~i~~~~--~~~q~l~~SAT~~ 325 (533)
..+++++||+|.+... .....+..++..+ ...++|+.|...+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 4568999999998753 2234444554443 3455555554433
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.96 E-value=0.23 Score=46.88 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 128
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.75 E-value=0.091 Score=53.27 Aligned_cols=53 Identities=13% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCeeEEEEecchhhh---hcCcHHHHHHHHHhCC-CCcEEEEeccCCHHHHHHHHhh
Q 009494 283 DDIRMFVLDEVDCML---QRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 283 ~~~~~vVvDEah~~~---~~~~~~~~~~i~~~~~-~~q~l~~SAT~~~~~~~l~~~~ 335 (533)
.++++||+|++-++. +..+...+..+...+. ..-++.++|+........+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 568899999998653 3334556666665553 4445677887665555554444
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.68 E-value=0.098 Score=52.10 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999985
No 130
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.15 E-value=0.14 Score=56.09 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCCCCCccEEE
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~---~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-|...++.+.+.. ++.+..+||+++..+|...++.+.+|..+|+|+|. .+...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 35789999999998888888776433 68999999999999999999999999999999997 445667888888888
Q ss_pred E
Q 009494 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 7
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.13 E-value=0.25 Score=46.84 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=31.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHH-HHHHHH--HhCCCcEEEEccCCCchhHHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQ-MQAIPS--ALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q-~~~i~~--~~~~~~~lv~a~TGsGKT~~~ 189 (533)
|-..|+++.-.+...+.+...=- .+.+ .+.+.. +...+.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777666666666654310 0000 111111 124567999999999999853
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.03 E-value=0.36 Score=42.15 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999853
No 133
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.01 E-value=0.087 Score=47.01 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.++=.++.|++|||||.- ++-.+.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH---------cCCeEEEEccc
Confidence 355678899999999964 3333333322 24679999887
No 134
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.00 E-value=0.25 Score=50.44 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+...+.. ..+..++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal-~ia~~~a~--------~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFAL-TIAQNAAL--------KEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH--------TTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH--------hCCCeEEEEEC
Confidence 45568999999999997543 33333322 12445777764
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.74 E-value=0.33 Score=47.98 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
++.+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999985
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.73 E-value=0.14 Score=49.41 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346999999999999854
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.66 E-value=0.26 Score=50.46 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=24.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+...+.. ..+..++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l-~ia~~~~~--------~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFAL-NIAQNVAT--------KTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHH-HHHHHHHH--------HSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHHHHH--------hCCCcEEEEEC
Confidence 45678999999999998543 33333322 12345777764
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.63 E-value=0.48 Score=43.57 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.|.-+++.|++|+|||..++- ++..+.. .+..++++.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~-~~~~~~~---------~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQ-FLWNGLK---------MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHH-HHHHHHH---------TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHh---------cCCeEEEEEccC-CHHHHHHHHH
Confidence 567789999999999985433 3222221 234577776432 2344444444
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.62 E-value=1.6 Score=39.32 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999975
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.61 E-value=0.036 Score=48.71 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
...+++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999853
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.56 E-value=0.74 Score=44.62 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=30.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-----CCCcEEEEccCCCchhHHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~ 189 (533)
|-..|+++.-.+...+.|...=. .|. ..|.+. ..+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887766777766654310 000 011111 2356999999999999853
No 142
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.49 E-value=0.097 Score=50.91 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=23.9
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCC-CCcEEEEec
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSA 322 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~-~~q~l~~SA 322 (533)
...++|++||+|.+........+..++...+ ..++|+.|.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 3678999999999862223444555555443 345555443
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.47 E-value=0.22 Score=48.60 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999853
No 144
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.45 E-value=0.33 Score=46.81 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
....+||+||+|.+.... ...+..++...+..-.+.++++.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 457899999999885432 34455555554433334444443
No 145
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.42 E-value=0.056 Score=49.73 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.11 E-value=0.24 Score=48.61 Aligned_cols=41 Identities=7% Similarity=0.173 Sum_probs=24.9
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
..+.+++|+||+|.+ +......+..++...+...+++++++
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 346789999999984 44445566666666544434444433
No 147
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.03 E-value=1.1 Score=39.83 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=68.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH-HHHHHHHHHHHHcCCCCCeEEEEEcCc--
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE-LCIQVEEQAKLLGKGLPFKTALVVGGD-- 248 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~-L~~Q~~~~~~~~~~~~~~~~~~~~gg~-- 248 (533)
...+++..++|.|||.+++-.++..+ +.|.+++|+.-.+. ....=...++.+ ++.....-.|-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~----------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~ 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV----------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTW 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH----------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH----------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEccccccc
Confidence 34689999999999998877776655 34677888842221 000000112222 12211111111
Q ss_pred --ch-HHHHHHHHcCCceeecCHHHHHHHHHcCCCCCCCeeEEEEecchhhhhcC--cHHHHHHHHHhCCCCcEEEEe-c
Q 009494 249 --AM-ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYS-A 322 (533)
Q Consensus 249 --~~-~~~~~~l~~~~~Iii~Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~~~--~~~~~~~i~~~~~~~q~l~~S-A 322 (533)
.. ....... -+.| ..... .+.-..+++||+||+-.....+ -.+.+..++...+..+-+.+| -
T Consensus 94 ~~~~~~~~~~~a----------~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 94 ETQNREADTAAC----------MAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp CGGGHHHHHHHH----------HHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CCCCcHHHHHHH----------HHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 00 0000000 1111 11111 1223678999999998765544 245566666666555555554 4
Q ss_pred cCCHHHHHHHH
Q 009494 323 TISQEVEKMSS 333 (533)
Q Consensus 323 T~~~~~~~l~~ 333 (533)
-.|+++..++.
T Consensus 162 ~ap~~l~e~AD 172 (196)
T 1g5t_A 162 GCHRDILDLAD 172 (196)
T ss_dssp SCCHHHHHHCS
T ss_pred CCcHHHHHhCc
Confidence 55666655543
No 148
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.65 E-value=0.48 Score=45.66 Aligned_cols=42 Identities=5% Similarity=0.127 Sum_probs=25.6
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccCC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~~ 325 (533)
...+++||||+|.|.... ...+.+.++..+..-++++.++-+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEECCh
Confidence 468899999999986443 344555555544444444444433
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.14 E-value=0.7 Score=45.09 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
....+|++||+|.+.... ...+..+++..+....+.++++
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 356899999999886432 3455566665544333334433
No 150
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.12 E-value=1 Score=45.57 Aligned_cols=56 Identities=20% Similarity=0.107 Sum_probs=30.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEc--ccHHHHHHHHHHHHHHcCCCCCeEE
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTA 242 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~--Ptr~L~~Q~~~~~~~~~~~~~~~~~ 242 (533)
-+++++++|+|||++..-.+ .++. ..+.+++++. |.|.-+. ++++.+....++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~---------~~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQ---------KRGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHH---------TTTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHH---------HCCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEE
Confidence 47889999999998644322 2222 2344565555 4444332 344444444444443
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.11 E-value=0.2 Score=48.05 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=16.6
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009494 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~ 189 (533)
..|.-+++.|++|+|||..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 36777899999999999843
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.09 E-value=1.7 Score=42.56 Aligned_cols=41 Identities=10% Similarity=0.270 Sum_probs=24.6
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEecc
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT 323 (533)
.....+|||||+|.+.... ...+...+...+..-++.++++
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEES
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEeC
Confidence 3456799999999885432 3445555555444444444444
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.77 E-value=0.69 Score=41.95 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.|.-+++.||+|+|||..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677899999999999743
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.75 E-value=0.62 Score=44.76 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=21.9
Q ss_pred CeeEEEEecchhhhhcCcHHHHHHHHHhCCCC-cEEEEe
Q 009494 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLP-QILMYS 321 (533)
Q Consensus 284 ~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~-q~l~~S 321 (533)
+..+||+||+|.+.... ...+...+...+.. .+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999886432 33344555554333 344443
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.29 Score=49.70 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=33.3
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.|-.+|++.+=-+...+.|+.. .+..|--++... +..-+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 3556888887777777777653 111221111111 12347799999999999984
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.41 E-value=0.39 Score=50.07 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=26.2
Q ss_pred CCeeEEEEecchhhhhcC--cHHHHHHHHHhCCCCcEEEEeccC
Q 009494 283 DDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~--~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
..-.+|+|||+|.+.... ....+..++.. ....+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 346789999999986532 22445555544 345577777764
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.33 E-value=0.18 Score=49.27 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+...+.. .+..++|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~---------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN---------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH---------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH---------cCCeEEEEeC
Confidence 45668999999999998543 33333322 2456888764
No 158
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.33 E-value=0.13 Score=52.67 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999853
No 159
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.32 E-value=0.63 Score=46.74 Aligned_cols=79 Identities=8% Similarity=0.016 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccccc----ccCCCCCcc
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG----RGVELLGVR 452 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~~--~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~~----~Gldi~~v~ 452 (533)
..++++||.++++.-+..+++.+.+. .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 45678999999999999999999843 477999999999999999899999999999999997322 124556778
Q ss_pred EEEEc
Q 009494 453 QVIIF 457 (533)
Q Consensus 453 ~VI~~ 457 (533)
+||.-
T Consensus 142 ~iViD 146 (414)
T 3oiy_A 142 FVFVD 146 (414)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 87763
No 160
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.17 E-value=1.6 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.3
Q ss_pred HhCCCcEEEEccCCCchhHHHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~ll 191 (533)
+..|+-+++.|++|+|||..+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 34677899999999999985443
No 161
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.50 E-value=0.63 Score=45.03 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=24.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++- +...+.. .+..+++++-
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~---------~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSD---------NDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHT---------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH---------cCCeEEEEEC
Confidence 566789999999999975433 3333321 1356888774
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.18 E-value=0.8 Score=45.76 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.6
Q ss_pred CcEEE--EccCCCchhHH
Q 009494 173 KSLLV--SANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv--~a~TGsGKT~~ 188 (533)
..+++ .|++|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45788 89999999985
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.98 E-value=1.1 Score=43.18 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999853
No 164
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.81 E-value=4.2 Score=39.26 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=30.4
Q ss_pred CHHHHHHHHHcCCCCCCCeeEEEEecchhhhh---cCcHHHHHHHHHhCCCCcEEEEe
Q 009494 267 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ---RGFRDQVMQIFRAISLPQILMYS 321 (533)
Q Consensus 267 Tp~~l~~~l~~~~~~l~~~~~vVvDEah~~~~---~~~~~~~~~i~~~~~~~q~l~~S 321 (533)
+...+.+.+....- .--+|||||+|.+.. ..+...+..+....+...+++.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEE
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEc
Confidence 34555555554221 234799999999864 35666666666654444444433
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.79 E-value=0.57 Score=44.96 Aligned_cols=16 Identities=50% Similarity=0.663 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999753
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.73 E-value=1.9 Score=41.92 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
...+++|+||+|.|.... ...+..+++..+....+.+.++.
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEecC
Confidence 457899999999886432 44556666665443334444443
No 167
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.71 E-value=1.1 Score=51.58 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCCCCCccEEE
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~---~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-|...++.+.+.. ++.+..+++..+..++..+++.+..|..+|+|+|. .+...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 45689999999999988888876433 57788999999999999999999999999999995 556668888888877
Q ss_pred E
Q 009494 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 6
No 168
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.65 E-value=2.7 Score=37.08 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=53.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
++++||.++++.-+..+.+.++.. ++.+..++|+.+..+.... .. ....|+|+| +.+. ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 457999999999999988888765 5778888988776544332 23 358899999 3333 35678888
Q ss_pred eEEEEec
Q 009494 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9888743
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.18 E-value=0.29 Score=46.03 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.7
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009494 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~ 188 (533)
+..|.-+++.||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677789999999999984
No 170
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=89.01 E-value=0.32 Score=33.55 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=16.3
Q ss_pred cccCCCCCeeeeeccccccc
Q 009494 30 REALPEEPKCVICGRYGEYI 49 (533)
Q Consensus 30 ~~~~~~~~~c~~c~~~~~~~ 49 (533)
+-+......|+.||..|||.
T Consensus 17 ~~~~~~~~~C~~Cge~GH~a 36 (56)
T 1u6p_A 17 RRSQLDRDQCAYCKEKGHWA 36 (56)
T ss_dssp CSTTCCTTBCSSSCCBSSCG
T ss_pred CCCCCCCCcceeCCCCCccc
Confidence 44556677899999999977
No 171
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=88.61 E-value=0.17 Score=32.32 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=16.3
Q ss_pred cccCCCCCeeeeeccccccc
Q 009494 30 REALPEEPKCVICGRYGEYI 49 (533)
Q Consensus 30 ~~~~~~~~~c~~c~~~~~~~ 49 (533)
|-+......|+.||++|||+
T Consensus 4 r~~~~~~~~C~~Cgk~GH~a 23 (40)
T 1a6b_B 4 RRSQLDRDQCAYCKEKGHWA 23 (40)
T ss_dssp TCCSCCSSSCSSSCCTTCCT
T ss_pred ccCCCCCCeeeECCCCCcch
Confidence 44556678899999999977
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.58 E-value=0.35 Score=40.71 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.1
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009494 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~ 188 (533)
...+.++++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44678899999999999974
No 173
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.37 E-value=0.72 Score=46.97 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+..++.. .+.++++++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal-~ia~~~a~---------~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFAL-KQAKNMSD---------NDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHH-HHHHHHHH---------TTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHH-HHHHHHHH---------cCCEEEEEEC
Confidence 45668999999999998544 33333332 1456888874
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.27 E-value=0.37 Score=40.64 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=17.2
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009494 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~ 189 (533)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46778999999999999854
No 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.22 E-value=2.9 Score=40.33 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.++.++|.|+.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 357899999999999984
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.17 E-value=2.2 Score=44.00 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
..+.+++.||+|+|||+.+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999853
No 177
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.07 E-value=1.1 Score=43.57 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=31.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH-HHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL-CIQVEEQAKLL 233 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L-~~Q~~~~~~~~ 233 (533)
.|.-+++.|++|+|||..++-.+. .+.... ...+.+..++++.--..+ ..++...++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~-~~~~~~---~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV-NVQLPP---EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HTTSCG---GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH-HHhccc---ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999985443332 221100 001224568887654322 33444444443
No 178
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.89 E-value=0.57 Score=49.11 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.+..+++.||+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999984
No 179
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.09 E-value=1.5 Score=50.09 Aligned_cols=80 Identities=9% Similarity=0.059 Sum_probs=64.8
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccc---cCCCCCcc
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGR---GVELLGVR 452 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~~--~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~~~---Gldi~~v~ 452 (533)
..+.++||.++++.-|..+++.+.+. .++.+..+||+.+..+|....+.+..|..+|+|+|.- +.. -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 45678999999999999999999842 4678999999999988899999999999999999973 211 14556788
Q ss_pred EEEEcC
Q 009494 453 QVIIFD 458 (533)
Q Consensus 453 ~VI~~d 458 (533)
+||.-.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 888733
No 180
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.48 E-value=0.23 Score=50.37 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=35.9
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.|-.+|++.+--+...+.|... .+..|.-++...+ ...+.+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 4667899998877777777643 2223333332222 1246799999999999985
No 181
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.06 E-value=3 Score=35.55 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=53.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HHc-CCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..+.... ... ...|+|+| +.+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hcCCchhcC
Confidence 456999999999999888887764 5788888988776554332 233 47899999 222 345678888
Q ss_pred eEEEEecc
Q 009494 286 RMFVLDEV 293 (533)
Q Consensus 286 ~~vVvDEa 293 (533)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 98887443
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.96 E-value=1.1 Score=45.30 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.+.-+++.||||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345588999999999984
No 183
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=85.67 E-value=3.7 Score=35.43 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HHc-CCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++..+..+...+... ++.+..++|+.+..+.... ... ..+|+|+| +. ....+++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~-~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NV-CARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CS-CCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cc-hhcCCCccc
Confidence 3568999999999998888777653 6788889988776554333 233 47899999 22 234567889
Q ss_pred eeEEEEec
Q 009494 285 IRMFVLDE 292 (533)
Q Consensus 285 ~~~vVvDE 292 (533)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99998533
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.56 E-value=0.99 Score=44.45 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.+..++++||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999984
No 185
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.49 E-value=5.4 Score=35.66 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----cccCCCCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 450 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~----~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~ 450 (533)
..++||.++++.-+..+++.+.+.. +..+..++|+.+..++.. .+..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3489999999999999888876432 678899999998665443 345577899999962 1 23456777
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888776
No 186
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.24 E-value=5.5 Score=33.91 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=53.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++.-+..+...++.. ++.+..++|+.+..+.... .. ....|+|+| +.+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hcCCCcccC
Confidence 467999999999999888887764 5678888888775554332 23 347899999 222 345678888
Q ss_pred eEEEEecc
Q 009494 286 RMFVLDEV 293 (533)
Q Consensus 286 ~~vVvDEa 293 (533)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88887443
No 187
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.15 E-value=3.4 Score=39.78 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ll 191 (533)
.|.-+++.|++|+|||..++-
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345689999999999985443
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.04 E-value=1.2 Score=46.06 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=25.9
Q ss_pred HHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHH
Q 009494 148 QNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 148 ~~l~~~g~~~p~p~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~ 188 (533)
..|...|. +++.+...+.. +..|..++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44455552 33444444443 34788899999999999983
No 189
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.91 E-value=1.1 Score=45.56 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=31.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
...++++.|+||||||.. +..++..++. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~---------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL---------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH---------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH---------CCCcEEEEeCCCchhH
Confidence 457899999999999986 4445555443 2456888888888754
No 190
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.67 E-value=4.7 Score=40.20 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.|.-+.+.+|+|+|||..+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 35668999999999998543
No 191
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.42 E-value=1.9 Score=44.67 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=25.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+...+.. ..+.++++++-
T Consensus 241 ~G~l~li~G~pG~GKT~lal-~~a~~~a~--------~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVR-QQALQWGT--------AMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHH-HHHHHHTT--------TSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHH-HHHHHHHH--------hcCCcEEEEec
Confidence 56678999999999998543 33333322 12456788764
No 192
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.15 E-value=4.1 Score=36.55 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHH---Hc-CCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRI---QQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..++...+ .. ..+|+|+| +.+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccC
Confidence 457999999999999888887765 57888899988766544333 33 47899999 333 345678889
Q ss_pred eEEEE
Q 009494 286 RMFVL 290 (533)
Q Consensus 286 ~~vVv 290 (533)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98885
No 193
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=82.72 E-value=11 Score=29.28 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=69.8
Q ss_pred eEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc--ccccC-----CCCCccEEEE
Q 009494 384 AVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI--LGRGV-----ELLGVRQVII 456 (533)
Q Consensus 384 ~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~--~~~Gl-----di~~v~~VI~ 456 (533)
.+||.+..+-...+...++ ..|..++.++++.+...|.+-++.|.....+|--.-+. +...+ -.|.+++|++
T Consensus 5 fvvfssdpeilkeivreik-rqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvi 83 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIK-RQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVI 83 (162)
T ss_dssp EEEEESCHHHHHHHHHHHH-HTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEecCCHHHHHHHHHHHH-hCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3567777777777888887 88999999999999999999999998766554322211 11111 1355566555
Q ss_pred cCCCC--CHhHHHHhhccccCCCCccEEEEEecCcCHHHHHHHHHHHHHcCC
Q 009494 457 FDMPN--SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 506 (533)
Q Consensus 457 ~d~p~--s~~~y~qriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 506 (533)
..... =+.+|+..+.-- .-.+++.+++.+...-+.-.+...+.|.
T Consensus 84 vttddkewikdfieeaker-----gvevfvvynnkdddrrkeaqqefrsdgv 130 (162)
T 2l82_A 84 VTTDDKEWIKDFIEEAKER-----GVEVFVVYNNKDDDRRKEAQQEFRSDGV 130 (162)
T ss_dssp EECCCHHHHHHHHHHHHHT-----TCEEEEEEECSCHHHHHHHHHHHCCSSC
T ss_pred EecCcHHHHHHHHHHHHhc-----CcEEEEEecCCCchhHHHHHHHhhhcCc
Confidence 43321 133444433211 1255666666666555555555555444
No 194
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.23 E-value=1.6 Score=41.97 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=27.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
-+++.+|+|+|||..++- ++..+.. .+.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~-------~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMR-------QYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHH-------HCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHh-------cCCCceEEEEeccchh
Confidence 588999999999986443 3333332 1235678898876555
No 195
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.78 E-value=6.5 Score=35.83 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHh---hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-ccCCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG-RGVELLG 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~---~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~-~Gldi~~ 450 (533)
.++++||.++++.-+..+++.+.+ ..++.+..++|+.+..++...+. ...+|+|+|.- +. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999998888777753 34788999999998776554443 24789999962 22 3457778
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888876
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.76 E-value=0.43 Score=47.67 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=32.5
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
|-.+|++.+=-+...+.|+.. .+..|--++...+ ...+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 556899887556666666543 1222222222111 1347899999999999985
No 197
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.22 E-value=1.9 Score=38.83 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
+.-|..++..+..|.-+.+.+|.|||||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445777888888899999999999999983
No 198
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.17 E-value=1.1 Score=44.22 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009494 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~ 188 (533)
+..|+.++++||||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44788999999999999983
No 199
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=80.96 E-value=5.9 Score=34.08 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=53.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..+.... .. ....|+|+|. . ....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhC
Confidence 457999999999999888887764 5778888888776554332 23 3488999992 2 2345678888
Q ss_pred eEEEEecc
Q 009494 286 RMFVLDEV 293 (533)
Q Consensus 286 ~~vVvDEa 293 (533)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88887443
No 200
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=80.75 E-value=2.3 Score=43.73 Aligned_cols=53 Identities=9% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcCC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.+....+.+-||||||++.. .++.. .+..+|||+|+...|.|+++.++.+...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-~l~~~------------~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-EIAER------------HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-HHHHH------------SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHH-HHHHH------------hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 45668899999999998522 22211 1334899999999999999999988643
No 201
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.72 E-value=10 Score=37.01 Aligned_cols=20 Identities=30% Similarity=0.145 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.|+-+.+.+|+|||||..+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668999999999998543
No 202
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.71 E-value=0.51 Score=32.40 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=13.1
Q ss_pred CCCeeeeeccccccc
Q 009494 35 EEPKCVICGRYGEYI 49 (533)
Q Consensus 35 ~~~~c~~c~~~~~~~ 49 (533)
..-.|+.||..||||
T Consensus 6 ~~~~C~kCGk~GH~~ 20 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYI 20 (55)
T ss_dssp SSCCCTTTCCTTSCG
T ss_pred CCCccccCCCcCccc
Confidence 345799999999999
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.17 E-value=1.7 Score=42.08 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=29.6
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
|-.+|++.+=.+...+.|... ....|..++ ......+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHH
Confidence 345788877666666666532 000000000 00112367999999999999853
No 204
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.04 E-value=3 Score=43.31 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 440 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~ 440 (533)
.+++||.++++.-+....+.|. ..++.+..+|++.+..++..+...+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQ-ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3679999999999999999998 7799999999999999999999999999999999986
No 205
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.02 E-value=7.8 Score=34.05 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-ccCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG-RGVELL 449 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~----~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~-~Gldi~ 449 (533)
.+.++||.++++.-+..+++.+.... +..+..++|+.+..+.... + .+..+|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 34589999999999988888876432 6778889999886543322 2 356789999972 22 234666
Q ss_pred CccEEEE
Q 009494 450 GVRQVII 456 (533)
Q Consensus 450 ~v~~VI~ 456 (533)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888776
No 206
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.97 E-value=1 Score=54.07 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.++++++.+|+|+|||..+...+.... ..+.+++++..-..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~----------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ----------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH----------TTTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----------HcCCcEEEEEccccc
Confidence 478899999999999986544443322 246678888866433
No 207
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.53 E-value=16 Score=37.99 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=57.4
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCC
Q 009494 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELD 283 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~ 283 (533)
..+.++||.++++.-+..+++.++..... ++.+..++|+.+..+.... .. ...+|+|||. .+ ...+++.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip 409 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 409 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcc
Confidence 34668999999999999999988876442 5678888888776554332 22 3588999993 33 3467888
Q ss_pred CeeEEEEecc
Q 009494 284 DIRMFVLDEV 293 (533)
Q Consensus 284 ~~~~vVvDEa 293 (533)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 9999886553
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.49 E-value=8 Score=42.17 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999854
No 209
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=79.28 E-value=7.9 Score=35.54 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCCeEEEEcchhhHHHHHHHHHh---hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc--ccCCCCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG--RGVELLG 450 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~---~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~--~Gldi~~ 450 (533)
+.++||.++++.-+..+++.+.+ ..++.+..++|+.+..++...+ .+..+|+|+|.- +. .++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999888877763 2378889999998866544333 256789999952 11 4567778
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888776
No 210
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.08 E-value=2.9 Score=40.14 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
++++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999853
No 211
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.91 E-value=2.4 Score=41.65 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999854
No 212
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.75 E-value=4.3 Score=35.54 Aligned_cols=72 Identities=11% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHH---HHHHH-cCCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQ-QGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+...++.. ++.+..++|+.+..+. +.... ....|+|+| +.+. ..+++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhh-cCCCccc
Confidence 4567999999999999888877764 5778888887664432 22333 347899999 2222 3457788
Q ss_pred eeEEEE
Q 009494 285 IRMFVL 290 (533)
Q Consensus 285 ~~~vVv 290 (533)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 888886
No 213
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.65 E-value=1.2 Score=38.98 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-++++||+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999984
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.24 E-value=0.8 Score=46.35 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=32.1
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.|-.+|++.+=-+...+.|... .+..|--++... +.-.+.+|+.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 3556789887666666666543 111221111111 11346799999999999985
No 215
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.22 E-value=6.1 Score=35.53 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=48.8
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc------ccccCCCCCc
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI------LGRGVELLGV 451 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~--~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~------~~~Gldi~~v 451 (533)
.+.++||.++++.-+..+++.+.+. .+..+..++|+.+..++... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999988743 36778888988875544333 22 34789999962 1235667788
Q ss_pred cEEEE
Q 009494 452 RQVII 456 (533)
Q Consensus 452 ~~VI~ 456 (533)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88776
No 216
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.03 E-value=3.4 Score=43.64 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=53.1
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH--hcCCCcEEEEcc
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF--LVGEVPVIVATG 440 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~~~er~~~~~~f--~~g~~~VLvaT~ 440 (533)
.+.+||.++++.-+....+.|. ..|+.+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLK-QLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH-HHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4689999999999999999998 6699999999999999999998888 568899999998
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.79 E-value=1.2 Score=43.28 Aligned_cols=18 Identities=50% Similarity=0.757 Sum_probs=16.5
Q ss_pred hCCCcEEEEccCCCchhH
Q 009494 170 LSGKSLLVSANTGSGKTA 187 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~ 187 (533)
..|+.+++.||||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 478899999999999998
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.75 E-value=1 Score=39.02 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
++-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 219
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.42 E-value=5.6 Score=45.21 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHhh---cCC----eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCC-CC
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISVT---TGM----KALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVE-LL 449 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~~---~~~----~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-~~~~Gld-i~ 449 (533)
..+.++||.++++.-|..+++.+.+. .++ .+..+||+.+..++....+.+.+ .+|+|+|+ .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 35678999999999999888888633 356 78899999998888777777776 89999997 3332222 55
Q ss_pred CccEEEE
Q 009494 450 GVRQVII 456 (533)
Q Consensus 450 ~v~~VI~ 456 (533)
++++||.
T Consensus 175 ~l~~lVi 181 (1054)
T 1gku_B 175 HFDFIFV 181 (1054)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 7777776
No 220
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.19 E-value=2.5 Score=40.30 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=30.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~ 189 (533)
|-.+|++++-.+...+.+...- ..|..+....... +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3456777766666666665420 0000000000111 124677999999999999853
No 221
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=77.12 E-value=11 Score=37.26 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=53.9
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..+.... .. ...+|+||| +.+. ..+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCccc
Confidence 5678999999999999888887764 5788888888876554332 22 357899999 3333 4568889
Q ss_pred eeEEEE
Q 009494 285 IRMFVL 290 (533)
Q Consensus 285 ~~~vVv 290 (533)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998886
No 222
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.11 E-value=6.7 Score=35.43 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=52.3
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----cccCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELL 449 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~----~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~ 449 (533)
.+.++||.++++.-+..+++.+.+.. ++.+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 35689999999999999988887432 67888999999876654433 35789999973 2 1345666
Q ss_pred CccEEEE
Q 009494 450 GVRQVII 456 (533)
Q Consensus 450 ~v~~VI~ 456 (533)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777766
No 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.92 E-value=11 Score=33.13 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-ccCCCCCcc
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG-RGVELLGVR 452 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~-~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~-~Gldi~~v~ 452 (533)
.+.++||.++++.-+..+++.+.+.. +..+..++|+.+...+...+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 45689999999999999999887443 367888899887554433332 25789999962 22 345677788
Q ss_pred EEEE
Q 009494 453 QVII 456 (533)
Q Consensus 453 ~VI~ 456 (533)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 224
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.86 E-value=1.3 Score=41.12 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
..+.+++.||+|+|||..+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999853
No 225
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.86 E-value=1.4 Score=43.69 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.2
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009494 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~ 188 (533)
..|..++++||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4567789999999999984
No 226
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.41 E-value=21 Score=37.37 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCC
Q 009494 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELD 283 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~ 283 (533)
..+.++||.++|+.-+..+++.++..... ++.+..++|+.+..+.... +. ...+|+||| +.+ ...+++.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~GiDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hcCCCcc
Confidence 34668999999999999999988876442 5678888888776554332 22 358899999 333 3467888
Q ss_pred CeeEEEEecch
Q 009494 284 DIRMFVLDEVD 294 (533)
Q Consensus 284 ~~~~vVvDEah 294 (533)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 99999876543
No 227
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.36 E-value=1.8 Score=39.69 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.|.-+++.|++|+|||..++-.+.+.+.. .+..+++++-. +-..++.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~---------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------cCCCceeeccc-CCHHHHHHHHH
Confidence 45668999999999997544333333222 23447777643 22344444443
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.18 E-value=1.9 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009494 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~ 188 (533)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999984
No 229
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.98 E-value=2.3 Score=42.39 Aligned_cols=42 Identities=17% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+.++++.|+||||||...-. ++..+. ..+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~---------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREY---------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHH---------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHH---------HCCCEEEEEeCCcCH
Confidence 567899999999999985333 333322 235668888887654
No 230
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=75.92 E-value=1.6 Score=38.80 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.++.+++.|++|||||..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999854
No 231
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=75.74 E-value=0.72 Score=26.22 Aligned_cols=13 Identities=38% Similarity=0.994 Sum_probs=11.3
Q ss_pred Ceeeeeccccccc
Q 009494 37 PKCVICGRYGEYI 49 (533)
Q Consensus 37 ~~c~~c~~~~~~~ 49 (533)
..|+.||+.||+.
T Consensus 3 ~~Cf~CG~~GH~a 15 (26)
T 1dsq_A 3 PVCFSCGKTGHIK 15 (26)
T ss_dssp CBCTTTCCBSSCT
T ss_pred CeeEeCCCCCccc
Confidence 4699999999965
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=75.69 E-value=1.3 Score=38.45 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.8
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009494 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~ 189 (533)
..++.+++.|++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999854
No 233
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=75.63 E-value=1.3 Score=43.06 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHHH
Q 009494 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~l 190 (533)
+-++|+||||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=75.36 E-value=1.6 Score=39.05 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688899999999984
No 235
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.24 E-value=7.8 Score=35.02 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=49.7
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-c----cc--cCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L----GR--GVELL 449 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~----~~--Gldi~ 449 (533)
.+.++||.++++.-+..+++.+.+. .++.+..++|+.+..+....+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999988888743 247788899988755443332 46789999962 2 12 36667
Q ss_pred CccEEEE
Q 009494 450 GVRQVII 456 (533)
Q Consensus 450 ~v~~VI~ 456 (533)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7877776
No 236
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.12 E-value=1.4 Score=39.28 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.++-+++.||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566899999999999743
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=75.00 E-value=3 Score=39.92 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
++-+.+.+|+|+|||+. +..+..+.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHH
Confidence 45678899999999984 44444443
No 238
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.97 E-value=1.1 Score=45.34 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=31.4
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.|-.+|++.+=-+...+.|... .+..|--++... +...+.+|+.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 3456888887656666665442 111111111111 11346799999999999985
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.70 E-value=1.4 Score=42.28 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
+-++|+||||||||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34688999999999854
No 240
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.69 E-value=1.5 Score=44.14 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=32.5
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.|-.+|++.+=-+...+.|... .+..|--++...+ .-.+.+|+.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 3557899886555555555442 1223322222211 1246799999999999985
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.63 E-value=1.8 Score=38.55 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-+.++||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999984
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.56 E-value=1.7 Score=37.80 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
.+.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998543
No 243
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=74.43 E-value=4.6 Score=35.32 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHH
Q 009494 159 TPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.+-|..++..++.. +-.++.+.-|++||...+.-++.. .+ ..|..+.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~-a~--------~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMM-AR--------EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHH-HH--------HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHH-HH--------hcCeEEEEEcCchHHHHH
Confidence 35688888888743 346789999999998743333322 11 467889999999666443
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.96 E-value=6 Score=36.94 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCCHHHHH-HHHHHhCCC-----cEEEEccCCCchhHHHH
Q 009494 145 KLLQNIEAAGYDMPTPVQMQ-AIPSALSGK-----SLLVSANTGSGKTASFL 190 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~p~Q~~-~i~~~~~~~-----~~lv~a~TGsGKT~~~l 190 (533)
.+.+-|+..||. |++-. ++..++.++ .+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 566777777774 55533 244455443 48999999999998543
No 245
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.92 E-value=1.7 Score=44.93 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 163 MQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 163 ~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
..++-.+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34445566889999999999999984
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.72 E-value=1.4 Score=37.69 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+++.|++|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999854
No 247
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.67 E-value=27 Score=31.77 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----cccCCCCCc
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLGV 451 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~v 451 (533)
+.++||.++++.-+..+++.+.+. .+..+..++|+.+..+....+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888877632 356788889988755433322 346789999973 2 123567778
Q ss_pred cEEEE
Q 009494 452 RQVII 456 (533)
Q Consensus 452 ~~VI~ 456 (533)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88776
No 248
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=73.46 E-value=4.1 Score=37.09 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=45.8
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhc---CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cCCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGR-GVELLG 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~---~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-----~~~~-Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.+.. +..+..++|+..... ..+.+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 35689999999999999988887432 567778888765432 23445567789999994 2333 356677
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887776
No 249
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.43 E-value=1.5 Score=42.41 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.5
Q ss_pred HHHhCCCcEEEEccCCCchhHHH
Q 009494 167 PSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 167 ~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34446889999999999999743
No 250
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=73.38 E-value=2.3 Score=41.78 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++.-|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556678877 577899999999864
No 251
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.18 E-value=2 Score=38.13 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009494 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~ 188 (533)
..|.-+.+.|++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 252
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=73.05 E-value=6 Score=41.64 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhCCCCcEEEEec
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~~~~q~l~~SA 322 (533)
+.+-+++++||.-.-+|......+...+..+....++++.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 536 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45678899999998888777777777777664444555544
No 253
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.01 E-value=3.5 Score=40.33 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357999999999999853
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=72.94 E-value=1.8 Score=41.48 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-++|+||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999854
No 255
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=72.93 E-value=35 Score=36.39 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++|+..+..+.+.++.. ++++..++|+.+..+.... +. ...+|+||| +.+ ...+++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hCCcccCC
Confidence 4568999999999999888887765 5677778877665444333 33 348899998 222 35678899
Q ss_pred eeEEEEecchhhh
Q 009494 285 IRMFVLDEVDCML 297 (533)
Q Consensus 285 ~~~vVvDEah~~~ 297 (533)
+++||+-+++...
T Consensus 514 v~lVi~~d~d~~G 526 (661)
T 2d7d_A 514 VSLVAILDADKEG 526 (661)
T ss_dssp EEEEEETTTTCCT
T ss_pred CCEEEEeCccccc
Confidence 9999999987643
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.88 E-value=2 Score=38.27 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=17.4
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~ 189 (533)
+..++-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446778999999999999843
No 257
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=72.81 E-value=1.1 Score=25.18 Aligned_cols=14 Identities=36% Similarity=1.044 Sum_probs=12.1
Q ss_pred CCeeeeeccccccc
Q 009494 36 EPKCVICGRYGEYI 49 (533)
Q Consensus 36 ~~~c~~c~~~~~~~ 49 (533)
-|-|..|..+||..
T Consensus 3 RpYCe~CE~FGH~t 16 (26)
T 2hqh_E 3 RPYCEICEMFGHWA 16 (26)
T ss_dssp -CEETTTTEESSCG
T ss_pred CccchHHHHhCccc
Confidence 47899999999987
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=72.79 E-value=1.6 Score=38.10 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+.-+++.|++|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 556899999999999853
No 259
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.78 E-value=2.1 Score=38.15 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 677789999999999984
No 260
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.36 E-value=3.5 Score=51.18 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHH----HHHHHhCCCcEEEEccCCCchhHHHH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQ----AIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~----~i~~~~~~~~~lv~a~TGsGKT~~~l 190 (533)
+.+.+.+.+.+.|+ .+++.+.. ....+.....++++||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 44556667777777 46666532 33344467789999999999998754
No 261
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=72.36 E-value=7.8 Score=36.92 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=52.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHH---H-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRI---Q-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..++...+ . ...+|+||| +.+. ..+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccce
Confidence 567999999999988777766543 67889999987766544333 2 348899999 3333 45678899
Q ss_pred eEEEEec
Q 009494 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 9888533
No 262
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=72.35 E-value=2.1 Score=37.88 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-+.+.||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999984
No 263
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.14 E-value=13 Score=37.23 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=54.7
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhhcCC---eEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccc-----cCCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVTTGM---KALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGR-----GVELLG 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~~~~---~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~~~-----Gldi~~ 450 (533)
.+.++||.|+++.-+...++.+.+..+. .+..+||+....++..... ..+|+|+|.- +.. .+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4678999999999999999999866666 8899999998876655433 3679999963 221 456677
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 887776
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.86 E-value=1.7 Score=38.13 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=16.0
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009494 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~ 188 (533)
..|+-+++.|++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 265
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=71.83 E-value=2.7 Score=40.68 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445667877 577899999999864
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.75 E-value=2.5 Score=36.19 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
+..+++.|++|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999984
No 267
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.65 E-value=2 Score=39.88 Aligned_cols=15 Identities=40% Similarity=0.310 Sum_probs=13.1
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
++++||||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 688999999999854
No 268
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.18 E-value=3 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
.|.-+.+.||+|+|||+. +..+..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 455678899999999984 33444433
No 269
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.03 E-value=19 Score=33.18 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=52.2
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--ccCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG--RGVELL 449 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-----~~~--~Gldi~ 449 (533)
.+.++||.++++.-|...++.+++. .+..+..++|+......... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999988888742 35677888998876544433 3334 78999994 122 246777
Q ss_pred CccEEEE
Q 009494 450 GVRQVII 456 (533)
Q Consensus 450 ~v~~VI~ 456 (533)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888776
No 270
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=70.80 E-value=2.8 Score=41.90 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=18.3
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 009494 166 IPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 166 i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
+..++.|.+ ++..|.||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344567876 567899999999874
No 271
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.66 E-value=2.5 Score=41.18 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.2
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 009494 166 IPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 166 i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
+..++.|.+ ++..|+||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344557777 577899999999863
No 272
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.63 E-value=1.8 Score=41.14 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999853
No 273
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.61 E-value=2.9 Score=40.95 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.2
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778887 566899999999874
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.49 E-value=2.2 Score=38.24 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=15.9
Q ss_pred cEEEEccCCCchhHHHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVIS 195 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~ 195 (533)
.+++.||+|+|||..+ ..++.
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5899999999999853 33433
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=70.45 E-value=2.5 Score=36.86 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+..++++|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 276
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=70.43 E-value=6.2 Score=37.25 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999853
No 277
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.21 E-value=3 Score=41.70 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778887 567899999999874
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.11 E-value=4.8 Score=38.31 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.++.+++.+++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668889999999998544
No 279
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.00 E-value=3.1 Score=40.68 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=18.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445567876 577899999999864
No 280
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=69.92 E-value=3 Score=41.07 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445667877 567899999999863
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.77 E-value=2.3 Score=37.56 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5589999999999984
No 282
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.77 E-value=0.93 Score=42.83 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=26.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHH-HHHHHHHh--CCCcEEEEccCCCchhHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQ-MQAIPSAL--SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~p~Q-~~~i~~~~--~~~~~lv~a~TGsGKT~~ 188 (533)
|-.+|++.+-.+.+.+.|...=. .|+. .+++..+- -.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 34578888766677766654200 1111 12222211 234499999999999984
No 283
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=69.75 E-value=3.2 Score=40.26 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred HHHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 164 QAIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 164 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
..+..++.|.+ ++..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566778887 567899999999864
No 284
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=69.72 E-value=3 Score=39.96 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5678999999999999853
No 285
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=69.69 E-value=3.1 Score=40.65 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445667876 567899999999864
No 286
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=69.69 E-value=3.2 Score=40.88 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445567877 577899999999863
No 287
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=69.57 E-value=3.2 Score=40.69 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=18.4
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 009494 166 IPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 166 i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
+..++.|.+ ++..|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445667877 577899999999864
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.53 E-value=2 Score=37.06 Aligned_cols=16 Identities=31% Similarity=0.357 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3788999999999854
No 289
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=69.47 E-value=14 Score=36.41 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=53.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HHc-CCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++.-+..+++.+... +..+..++|+.+..+.... ... ..+|+|+|. .+ ...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 467999999999999888888765 5677888888776554332 233 478999993 22 346788899
Q ss_pred eEEEEec
Q 009494 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988533
No 290
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.45 E-value=28 Score=35.91 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009494 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~ 188 (533)
..|.-+++.+++|+|||..
T Consensus 279 ~~G~i~~i~G~~GsGKSTL 297 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLL 297 (525)
T ss_dssp ESSCEEEEEECTTSSHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH
Confidence 3567789999999999984
No 291
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=69.41 E-value=20 Score=34.95 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----cccCCCCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 450 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~----~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~ 450 (533)
+.++||.|+++.-+..+++.+.+.. +..+..++|+.+..++.. .+..+..+|+|+|.- + ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4589999999999998888876332 788999999998665543 345577899999963 2 23456777
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888776
No 292
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=69.32 E-value=3.2 Score=40.71 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4555668887 566899999999863
No 293
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=69.26 E-value=3.3 Score=40.63 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3455667877 577899999999864
No 294
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=69.22 E-value=2.9 Score=40.85 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.6
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4556678887 567899999999874
No 295
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.15 E-value=3.2 Score=40.63 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4555668887 567899999999864
No 296
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=69.13 E-value=3.3 Score=40.80 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455667877 567899999999863
No 297
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.10 E-value=2 Score=39.81 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999853
No 298
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.07 E-value=3.3 Score=40.40 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445567877 567899999999864
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.96 E-value=2.9 Score=36.52 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999984
No 300
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=68.89 E-value=3.1 Score=40.89 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455667877 567899999999863
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=68.82 E-value=2.1 Score=36.62 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.|++|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 302
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.82 E-value=1.1e+02 Score=32.42 Aligned_cols=78 Identities=9% Similarity=0.147 Sum_probs=57.1
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HHc-CCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++|+..+..+.+.+... ++++..++|+.+..+.... +.. ..+|+||| +.+ ...+++.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCC
Confidence 3568999999999999888877765 5677778877665544333 333 48899998 222 34678899
Q ss_pred eeEEEEecchhh
Q 009494 285 IRMFVLDEVDCM 296 (533)
Q Consensus 285 ~~~vVvDEah~~ 296 (533)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888754
No 303
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=68.76 E-value=7.9 Score=44.59 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=39.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhhhhhc--ccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCANIRLH--HSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~--~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
...+|.|..|||||.+...-++..++..... ....-.-..+|+|+=|+.-|..+.+.+...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3459999999999998655555555431100 000012346999999999888877766543
No 304
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=68.64 E-value=1.7 Score=25.39 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=11.4
Q ss_pred Ceeeeeccccccc
Q 009494 37 PKCVICGRYGEYI 49 (533)
Q Consensus 37 ~~c~~c~~~~~~~ 49 (533)
..|+.||++||+.
T Consensus 7 ~~C~nCgk~GH~a 19 (29)
T 1nc8_A 7 IRCWNCGKEGHSA 19 (29)
T ss_dssp CBCTTTSCBSSCG
T ss_pred CEEEECCccccCH
Confidence 5699999999965
No 305
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=68.53 E-value=2.1 Score=37.25 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.|..+++.|++|||||+.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999854
No 306
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.42 E-value=3.2 Score=37.49 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009494 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~ 188 (533)
..|+-+.+.||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999983
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=68.40 E-value=2 Score=37.13 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.|+-+.+.||+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999843
No 308
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.38 E-value=3 Score=37.20 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=14.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|.-+.|.||+|||||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678899999999983
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.80 E-value=2.7 Score=40.57 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.++++||||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 310
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=67.64 E-value=17 Score=35.41 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=55.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH---HHHc-CCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+++.++.. +..+..++|+.+..+... .... ..+|+|+|. . -...+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcCCCccc
Confidence 4568999999999999888888765 567788888877554333 2333 478999993 2 235678899
Q ss_pred eeEEEEecch
Q 009494 285 IRMFVLDEVD 294 (533)
Q Consensus 285 ~~~vVvDEah 294 (533)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999976554
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=67.55 E-value=1.7 Score=40.19 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=29.2
Q ss_pred cccCcccCCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAG--YDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g--~~~p~p~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~ 188 (533)
|-.+|+++.-.+.....++..- |.. ..++..+- -.+.+++.||+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 4457777766666655554431 111 12222211 134589999999999984
No 312
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=67.49 E-value=3.5 Score=40.87 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445667876 577899999999874
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.35 E-value=5.3 Score=39.02 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+-+++.+++|+|||..++.. ...+.. .+.+++++.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~l-a~~~~~---------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHA-VANAQA---------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH-HHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHH-HHHHHh---------CCCeEEEEECC
Confidence 4567899999999999854433 333322 23457777643
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.27 E-value=2.1 Score=36.83 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+..+++.|+.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999853
No 315
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=67.06 E-value=3.2 Score=40.93 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678887 566899999999864
No 316
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=66.90 E-value=2.9 Score=40.69 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-++|+||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4788999999999854
No 317
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=66.81 E-value=5.7 Score=38.96 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+-+++.+++|+|||..++-. ...+.. .+.+++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~l-a~~~~~---------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQV-IAAAQR---------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH-HHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHH-HHHHHH---------CCCeEEEEeCC
Confidence 4567899999999999865433 333322 23457777753
No 318
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=66.79 E-value=3.4 Score=40.81 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=18.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445567777 577899999999863
No 319
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.69 E-value=4.1 Score=40.04 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 172 GKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
+.-+.+.||+|+|||+. +..+..++
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 44578899999999984 33444443
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.68 E-value=3.4 Score=36.58 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.++-+++.|+.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466789999999999984
No 321
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.44 E-value=3.5 Score=41.22 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=20.4
Q ss_pred HHHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 164 QAIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 164 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
..+..++.|.+ ++..|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667778887 566899999999864
No 322
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.42 E-value=3.8 Score=37.99 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.|+.+++.|++|||||...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4899999999999999853
No 323
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=66.29 E-value=2 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.|+.+-++|+||||||.. +-++.++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL--~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTV--VALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSH--HHHHTTS
T ss_pred CCCEEEEECCCCChHHHH--HHHHhcC
Confidence 678899999999999983 3344443
No 324
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=66.23 E-value=6.1 Score=35.92 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=15.9
Q ss_pred cEEEEccCCCchhHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~ 193 (533)
++++.++.|.|||..++-.+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999998754433
No 325
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.09 E-value=2.4 Score=40.37 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45888999999999853
No 326
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.06 E-value=7.4 Score=35.41 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=48.5
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----ccc---cCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LGR---GVEL 448 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~~---Gldi 448 (533)
.+.++||.++++.-+..+++.+.+. .++.+..++|+..... .......+..+|+|+|.- +.+ .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4568999999999999998888743 2566666665432111 111223466789999952 112 4778
Q ss_pred CCccEEEE
Q 009494 449 LGVRQVII 456 (533)
Q Consensus 449 ~~v~~VI~ 456 (533)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88888876
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=65.91 E-value=4.2 Score=39.37 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
.+.-+.+.||+|+|||+. +..+..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTl--l~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT--IAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 345678899999999984 33444433
No 328
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.70 E-value=4.1 Score=41.17 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445568877 577899999999864
No 329
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.56 E-value=3.4 Score=40.99 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=17.7
Q ss_pred HHHhCCCc--EEEEccCCCchhHHH
Q 009494 167 PSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 167 ~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
..++.|.+ ++..|+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567777 567899999999864
No 330
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=65.52 E-value=10 Score=33.83 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=45.5
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHh---hcCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc------cccCCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL------GRGVELLG 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~---~~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~------~~Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.. ..+..+..++|+.+..++... +. ..+|+|+|.-. ...+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346899999999999888887763 236778889998775543332 22 37899999632 23556677
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777776
No 331
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=65.51 E-value=4.5 Score=38.76 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
++-+++.+++|+|||+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 3457889999999998543
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=65.28 E-value=2.4 Score=37.03 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+.-+++.|++|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345789999999999864
No 333
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=65.06 E-value=3.2 Score=37.03 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.|.-+++.|++|+|||..+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45678999999999998544
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.05 E-value=4.3 Score=34.13 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999984
No 335
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=64.98 E-value=4.3 Score=40.10 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566778887 566899999999864
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=64.83 E-value=5 Score=34.84 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+..+++.|++|||||..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999853
No 337
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=64.71 E-value=4 Score=36.33 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 009494 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~l 190 (533)
-.++.|++|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999998643
No 338
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=64.45 E-value=3.3 Score=41.28 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=13.1
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
++|+||||||||..+
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999754
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=64.30 E-value=4.5 Score=35.25 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
.+.+.||.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999983
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=64.26 E-value=4.1 Score=35.56 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+..+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 341
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.17 E-value=5.2 Score=35.24 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=26.3
Q ss_pred CCCeeEEEEecchhh--hhcCcHHHHHHHHHhCCCCcEEEEeccC
Q 009494 282 LDDIRMFVLDEVDCM--LQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 282 l~~~~~vVvDEah~~--~~~~~~~~~~~i~~~~~~~q~l~~SAT~ 324 (533)
..+.+++|+||+..+ .+..|...+..++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC--SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC--CCcEEEEEeec
Confidence 466789999998777 344466666666663 22344445564
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.12 E-value=4.1 Score=39.01 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
.|+-+.+.||+|||||. ++-++..+
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhh
Confidence 67888999999999998 33344443
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=63.92 E-value=2.7 Score=36.71 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+.-+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999854
No 344
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=63.92 E-value=20 Score=35.15 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=53.3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH---HHHc-CCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..+... .... ...|+|+|. . -...+++..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccC
Confidence 3468999999999999988888775 567888888877654333 2333 478999992 2 234567889
Q ss_pred eeEEEEec
Q 009494 285 IRMFVLDE 292 (533)
Q Consensus 285 ~~~vVvDE 292 (533)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888643
No 345
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.90 E-value=4.1 Score=36.28 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=16.2
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 009494 168 SALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 168 ~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.+..|+-+.+.||+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788889999999999983
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.83 E-value=4.2 Score=35.17 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=15.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHH
Q 009494 174 SLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
-.++.+++|||||.. +-++..+
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHH
T ss_pred cEEEECCCCCCHHHH--HHHHHHH
Confidence 468899999999984 3344443
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=63.76 E-value=6.2 Score=34.09 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 348
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=63.72 E-value=24 Score=33.75 Aligned_cols=74 Identities=12% Similarity=0.258 Sum_probs=52.4
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHH---HHH-cCCceeecCHHHHHHHHHcCCCCCCC
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..+... ... ...+|+|+|. .+. ..+++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 4567999999999999888888765 567888888877554332 223 3478999992 222 2456788
Q ss_pred eeEEEEec
Q 009494 285 IRMFVLDE 292 (533)
Q Consensus 285 ~~~vVvDE 292 (533)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88888644
No 349
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=63.68 E-value=4.2 Score=36.83 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.1
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009494 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~ 188 (533)
+..|+-+++.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44678889999999999984
No 350
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=63.03 E-value=3.9 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+..+++.|+.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4566899999999999853
No 351
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.99 E-value=3.7 Score=36.34 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.|.-+.+.|++|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667889999999999853
No 352
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=62.99 E-value=4.3 Score=40.01 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 353
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=62.91 E-value=7.3 Score=38.33 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEccc
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+-+++.+++|+|||..+ +.++..+.. .+..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~---------~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQK---------AGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHH---------TTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHH---------CCCeEEEEECC
Confidence 4567899999999999754 444444332 13457777654
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=62.83 E-value=4.2 Score=37.08 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.8
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009494 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~ 189 (533)
..|.-+.+.||+|||||+.+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHH
Confidence 36778999999999999853
No 355
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.60 E-value=4.3 Score=39.76 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999853
No 356
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.56 E-value=3.1 Score=39.43 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
.-++++|++|||||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999853
No 357
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=62.55 E-value=20 Score=35.20 Aligned_cols=73 Identities=8% Similarity=0.161 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
..++||.++++.-+..+.+.++.. ++.+..++|+.+..+.... .. ....|+|+|. . -...+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccC
Confidence 347999999999999888877764 5678888888775543332 22 3478999993 2 2346788999
Q ss_pred eEEEEec
Q 009494 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988643
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=62.06 E-value=4.4 Score=36.82 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.+..+++.|++|||||..+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568999999999998543
No 359
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.04 E-value=3.6 Score=37.31 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=11.7
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-+.+.||+|||||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 360
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=61.88 E-value=27 Score=34.87 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=51.3
Q ss_pred eEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHH---Hc-CCceeecCHHHHHHHHHcCCCCCCCeeE
Q 009494 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRI---QQ-GVELIVGTPGRLIDLLMKHDIELDDIRM 287 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~ 287 (533)
.+||.++++.-+..+.+.+... ++.+..++|+.+..+....+ +. ...|+|||. . -...+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCE
Confidence 3999999999999888887764 57788888887765543332 33 478999993 2 334678889998
Q ss_pred EEE
Q 009494 288 FVL 290 (533)
Q Consensus 288 vVv 290 (533)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.79 E-value=4.8 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.+++|||||..+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999854
No 362
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.68 E-value=5.4 Score=40.85 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.4
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
.-+.+.|++|+|||+.
T Consensus 294 eVI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCcccHHHH
Confidence 3477899999999984
No 363
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=61.57 E-value=4.4 Score=35.82 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
.-++++|++|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999853
No 364
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=61.55 E-value=4.5 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHH
Q 009494 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~l 190 (533)
+++++.++.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 365
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=61.42 E-value=4.2 Score=41.41 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
++++++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 467999999999999854
No 366
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=61.32 E-value=3.5 Score=38.72 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=29.5
Q ss_pred cccCcccCCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHH
Q 009494 133 PILSFSSCSLSQKLLQNIEAAG--YDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g--~~~p~p~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~ 188 (533)
|-.+|+++.-.+.....++..- |.. ...+..+- -.+.+++.+|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4456777766666666655431 111 11222211 124589999999999984
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=61.31 E-value=4 Score=36.15 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+.-+++.|++|||||..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999853
No 368
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.10 E-value=20 Score=33.87 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=52.7
Q ss_pred HHHHHHhhccC--CCCCeEEEEcchhhHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009494 369 KLFDILMSKQH--FTPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 369 ~l~~~l~~~~~--~~~~~LVf~~s~~~a~~l~~~L~~~~----~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~ 442 (533)
.++.++..... ..+++||.++++.-|..++..+.... +..+..++|+.....+. ....+|+|+|.--
T Consensus 148 ~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~ 220 (300)
T 3fmo_B 148 FVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGT 220 (300)
T ss_dssp HHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHH
T ss_pred HHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHH
Confidence 34444444322 34479999999999999888776322 46677777766532111 3456899999732
Q ss_pred ------c-ccCCCCCccEEEE
Q 009494 443 ------G-RGVELLGVRQVII 456 (533)
Q Consensus 443 ------~-~Gldi~~v~~VI~ 456 (533)
. ..+++.++++||.
T Consensus 221 l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 221 VLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp HHHHHTTTCCCCGGGCSEEEE
T ss_pred HHHHHHhcCCCChhhceEEEE
Confidence 1 3567778888887
No 369
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.08 E-value=11 Score=38.95 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++|.|+||||||...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3567999999999999853
No 370
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.04 E-value=7.5 Score=38.07 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=26.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.|+-+++.+|+|+|||.. ++.+...+.. .+..++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~---------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQK---------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHH---------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh---------cCCeEEEEeccccc
Confidence 356689999999999984 4444443322 24457787654333
No 371
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.01 E-value=2 Score=40.07 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999853
No 372
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.00 E-value=4.5 Score=36.12 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 159 ~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
++.+.... .+..+.-+++.|++|||||..+
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34555553 3456777889999999999853
No 373
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.80 E-value=8.3 Score=48.60 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHH----HHHHHhCCCcEEEEccCCCchhHHHH
Q 009494 142 LSQKLLQNIEAAGYDMPTPVQMQ----AIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~p~Q~~----~i~~~~~~~~~lv~a~TGsGKT~~~l 190 (533)
|.+.+.+.+.+.|+ +|.|.+.. ....+.....++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44556666677787 56666543 22334456779999999999999754
No 374
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.71 E-value=5.1 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
+.-+.+.|++|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44577899999999984
No 375
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.64 E-value=3.3 Score=39.38 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999854
No 376
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.64 E-value=3.5 Score=35.99 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=13.5
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
+-+++.||+|||||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468899999999984
No 377
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.46 E-value=5.5 Score=34.46 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
..+++.|++|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999854
No 378
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=60.45 E-value=4.9 Score=36.47 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ll 191 (533)
.|.-+++.+|+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 567789999999999985443
No 379
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.31 E-value=6.3 Score=37.99 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
++-+++.+++|+|||....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457889999999998543
No 380
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=60.31 E-value=4.6 Score=39.59 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
..+.+++.||+|+|||..+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999853
No 381
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.23 E-value=4.3 Score=37.20 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778999999999998
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=60.13 E-value=4.2 Score=34.70 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
+.+++.|++|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999854
No 383
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=59.98 E-value=11 Score=38.08 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=44.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEE
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~v 288 (533)
+.++||++|+++-+..+++.++.. ++++..++|. ........... ..+|+||| +.+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhh-eeeccC-ceEE
Confidence 457999999999999988888765 5677777773 33444444444 48999999 3333 345777 8887
Q ss_pred E
Q 009494 289 V 289 (533)
Q Consensus 289 V 289 (533)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 384
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=59.94 E-value=4.8 Score=35.92 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q 009494 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~l 190 (533)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 385
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=59.71 E-value=5.5 Score=39.08 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=15.6
Q ss_pred CCCc--EEEEccCCCchhHHH
Q 009494 171 SGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~--~lv~a~TGsGKT~~~ 189 (533)
.|.+ ++..|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4666 588999999999864
No 386
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=59.34 E-value=5.5 Score=35.74 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+..+++.|++|||||+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 387
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=59.29 E-value=5 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.|++|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999853
No 388
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=59.19 E-value=3.9 Score=40.57 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999854
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=59.19 E-value=5.1 Score=35.85 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHHH
Q 009494 175 LLVSANTGSGKTASFL 190 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~l 190 (533)
+++.||+||||++.+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998654
No 390
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=59.12 E-value=7.9 Score=44.55 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=26.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHH
Q 009494 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
-+|.|..|||||.+.+-- +.+++.. ...+.++|+++|...
T Consensus 4 ~lV~agAGSGKT~~l~~r-i~~ll~~------~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINS-IQDELRR------APFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHH-HHHHHHH------CTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHH-HHHHHHh------CCCCCcEEEEecCcc
Confidence 378999999999874433 3333332 123467999998753
No 391
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=59.07 E-value=11 Score=39.21 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 173 KSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
.+++|.|.||||||.+ +-.++..++
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 5789999999999985 444444443
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=59.03 E-value=3.8 Score=35.40 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|..+++.|+.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688999999999984
No 393
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.89 E-value=5.1 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q 009494 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~l 190 (533)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 394
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.82 E-value=5.9 Score=35.59 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
...+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 395
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.62 E-value=3.2 Score=36.89 Aligned_cols=19 Identities=32% Similarity=0.169 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+.-+.+.|++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556789999999999843
No 396
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=63.11 E-value=2 Score=36.97 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=47.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHH---HH-cCCceeecCHHHHHHHHHcCCCCCCCe
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iii~Tp~~l~~~l~~~~~~l~~~ 285 (533)
+.++||.++++..+..+.+.++.. ++.+..++|+.+..+.... .. ....|+|+| +.+ ...+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVA-ARGIDIPDV 99 (170)
Confidence 457999999999988877776654 5677788887665443222 22 236799999 222 234567777
Q ss_pred eEEEEec
Q 009494 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7777533
No 397
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=58.47 E-value=5.2 Score=34.07 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=18.5
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHH
Q 009494 170 LSGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~llp~l~~l 197 (533)
..|.-+.+.+|.|+|||. ++-++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHh
Confidence 356668899999999998 34444433
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.36 E-value=5.5 Score=35.97 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 399
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=58.31 E-value=2.9 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999853
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.13 E-value=5.4 Score=34.60 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.|++|||||..+
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 401
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.01 E-value=4.8 Score=36.12 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.|+-+.+.+|+|+|||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 566789999999999984
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=57.89 E-value=5.6 Score=35.92 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
.+-+++.||+||||++.+-
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457789999999998643
No 403
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.71 E-value=5.1 Score=35.34 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+..+++.|++|||||..+
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 404
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.52 E-value=5.8 Score=34.67 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+.-+++.|++|||||..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456889999999999854
No 405
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.48 E-value=9.2 Score=34.11 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=48.3
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhhc-------CCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----ccc-cCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVTT-------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LGR-GVE 447 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~~-------~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~~-Gld 447 (533)
+.++||.++++.-+..+++.+.+.. +..+..++|+.+..+... .+ .+..+|+|+|.- +.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 4689999999999988888776332 577888898876433211 11 245789999952 222 345
Q ss_pred CCCccEEEE
Q 009494 448 LLGVRQVII 456 (533)
Q Consensus 448 i~~v~~VI~ 456 (533)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777765
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=57.40 E-value=9.2 Score=36.68 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.5
Q ss_pred EEEEccCCCchhHH
Q 009494 175 LLVSANTGSGKTAS 188 (533)
Q Consensus 175 ~lv~a~TGsGKT~~ 188 (533)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999983
No 407
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=57.35 E-value=3.1 Score=39.89 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.++||+|||||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 67889999999999998
No 408
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=57.34 E-value=23 Score=35.03 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHHHHHh---CCCcEEEEccCCCchhHHH
Q 009494 160 PVQMQAIPSAL---SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 160 p~Q~~~i~~~~---~~~~~lv~a~TGsGKT~~~ 189 (533)
..=..+|..+. .|+.+.+.+++|+|||...
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 33345665555 6889999999999999853
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=57.09 E-value=5.2 Score=36.67 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 410
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.94 E-value=5.7 Score=35.64 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
..+.+.|++|||||+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999853
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=56.92 E-value=4 Score=35.23 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=11.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+.-+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=56.91 E-value=5.9 Score=38.32 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 009494 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~ 188 (533)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999984
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.72 E-value=4.8 Score=34.16 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999854
No 414
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=56.60 E-value=19 Score=34.64 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=15.6
Q ss_pred EEEEccCCCchhHHHHHHHHHHHh
Q 009494 175 LLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
+.+.||+|||||+. +-.+..++
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHh
Confidence 67799999999984 33444443
No 415
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=56.44 E-value=6.4 Score=38.76 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999985
No 416
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=56.39 E-value=4.8 Score=35.52 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+++.|++|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 417
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.32 E-value=4.4 Score=41.07 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=31.0
Q ss_pred CcccCcccCCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009494 132 APILSFSSCSLSQKLLQNIEAA-G--YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~-g--~~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 189 (533)
.|-..|+++.-.+...+.|... . ...|.-++ ......+.+++.||+|+|||..+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 3456788876666666666542 0 00111010 00123467999999999999853
No 418
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.26 E-value=4.8 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 419
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.24 E-value=9.2 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.174 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
.-+.+.|+.|||||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44788999999999843
No 420
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=55.97 E-value=5.2 Score=37.43 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778999999999998
No 421
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=55.65 E-value=6.7 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+.-+++.|+.|||||+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4566899999999999854
No 422
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.57 E-value=4.9 Score=35.46 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+.+.|++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999853
No 423
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.50 E-value=6.2 Score=46.75 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHcC
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.|+-+.+.+|.|||||..+ ++++.... ..+..++++.+-.+|.... ++.++-
T Consensus 1430 rg~~iei~g~~~sGkttl~-~~~~a~~~---------~~g~~~~~i~~e~~~~~~~---~~~~Gv 1481 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLT-LQVIAAAQ---------REGKTCAFIDAEHALDPIY---ARKLGV 1481 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHH---------HTTCCEEEECTTSCCCHHH---HHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHHH---------hcCCeEEEEecCCCCCHHH---HHHcCC
Confidence 4577999999999999864 44444333 2467788988876774432 555543
No 424
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.41 E-value=6.8 Score=38.10 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=26.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|.-+++.|++|+|||..++-.+...... ....+.+..++++.-..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~----~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLP----GAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSC----BTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc----cccCCCCCeEEEEECCC
Confidence 35568999999999998543332221110 00112355688877543
No 425
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=55.33 E-value=5.8 Score=41.91 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=55.27 E-value=7.7 Score=34.48 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=16.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHh
Q 009494 174 SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
-.++.||+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHh
Confidence 368899999999984 34444444
No 427
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.26 E-value=39 Score=32.75 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=51.6
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcccc------cccCCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL------GRGVELLG 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~~------~~Gldi~~ 450 (533)
.++++||.++++.-+..+++.+.+. .+..+..++|+....+....+. ..+|+|+|.-. ...+.+.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999998888877632 4678889999998766554443 46799999521 12345566
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777776
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=55.24 E-value=6.7 Score=38.55 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-.+++||+|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999854
No 429
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.14 E-value=6.5 Score=34.44 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.|++|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999843
No 430
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=55.08 E-value=49 Score=33.89 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHHH
Q 009494 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~l 190 (533)
.+++++++|+|||..+.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998643
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=54.80 E-value=5.3 Score=34.72 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 432
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=54.55 E-value=7.5 Score=39.65 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3457999999999999854
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=54.43 E-value=5.2 Score=37.12 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
.-++++|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35789999999999854
No 434
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=54.42 E-value=7.7 Score=34.92 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999998
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=54.42 E-value=6 Score=36.81 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999998
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=54.26 E-value=7.1 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
+..+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 437
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=54.26 E-value=7.3 Score=34.47 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009494 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ 189 (533)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566899999999999854
No 438
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=54.14 E-value=19 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.1
Q ss_pred HhCCCcEEEEccCCCchhHHHH
Q 009494 169 ALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 169 ~~~~~~~lv~a~TGsGKT~~~l 190 (533)
+..|+..++.++.|.|||....
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHH
Confidence 3478889999999999998543
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=53.79 E-value=6.9 Score=34.91 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+++.|++|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 440
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.55 E-value=30 Score=33.92 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=51.9
Q ss_pred CCCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-ccCCCCC
Q 009494 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG-RGVELLG 450 (533)
Q Consensus 380 ~~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-----~~-~Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.+. .+..+..++|+..... ....+..+..+|+|+|.- +. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999998888888643 3567777788776443 344556678899999952 22 2345666
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777766
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=53.42 E-value=5.7 Score=34.64 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 442
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.15 E-value=11 Score=39.95 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.1
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 009494 168 SALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 168 ~~~~~~~~lv~a~TGsGKT~~ 188 (533)
.+..++.+++.+|+|+|||..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 345788999999999999984
No 443
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=53.09 E-value=7.3 Score=36.62 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999998
No 444
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=53.08 E-value=4.3 Score=35.13 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.7
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
-+.+++++|||||+.
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 445
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=53.07 E-value=7.5 Score=35.84 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=52.99 E-value=7.6 Score=35.30 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999998
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=52.86 E-value=7.6 Score=35.17 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999998
No 448
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.79 E-value=6.6 Score=39.70 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 009494 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~ 189 (533)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999853
No 449
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=52.79 E-value=7.8 Score=35.72 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhHH
Q 009494 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~ 188 (533)
.+..+.+.||+|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999984
No 450
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=52.77 E-value=17 Score=36.41 Aligned_cols=67 Identities=4% Similarity=0.006 Sum_probs=46.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeEE
Q 009494 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~v 288 (533)
+.++||++|++.-+..+++.++.. ++++..++|+. .......... ..+|+||| +.+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 446999999999999988888775 56778887763 3333444443 48999999 44443 34555 5554
No 451
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.74 E-value=10 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
...+++.|++|||||+.+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4468999999999998543
No 452
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=52.70 E-value=7.4 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+.+.+++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 453
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=52.62 E-value=29 Score=37.75 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=54.3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHc-------CCCCCeEEEEEcCcchHHHHHHHH---------cCCceeecCHHHHH
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLG-------KGLPFKTALVVGGDAMARQVYRIQ---------QGVELIVGTPGRLI 272 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~l~---------~~~~Iii~Tp~~l~ 272 (533)
.+..+||.+|++.-+..+.+.++... ...++.+..++|+.+..++...+. ....|||||
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT----- 376 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----- 376 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----
Confidence 35689999999999998888877521 234678889999888766544332 235799999
Q ss_pred HHHHcCCCCCCCeeEEEE
Q 009494 273 DLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 273 ~~l~~~~~~l~~~~~vVv 290 (533)
+.+.. .+++..+.+||-
T Consensus 377 ~iae~-GidIp~v~~VId 393 (773)
T 2xau_A 377 NIAET-SLTIDGIVYVVD 393 (773)
T ss_dssp THHHH-TCCCTTEEEEEE
T ss_pred cHHHh-CcCcCCeEEEEe
Confidence 44443 457888887774
No 454
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.40 E-value=4.1 Score=37.68 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
..+++.|++|||||..+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 455
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=52.25 E-value=5.8 Score=36.46 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999998
No 456
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=51.45 E-value=6.4 Score=45.90 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCCeeEEEEecchhhhhcCcHHHHHHHHHhC-CCCcEEEE
Q 009494 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMY 320 (533)
Q Consensus 282 l~~~~~vVvDEah~~~~~~~~~~~~~i~~~~-~~~q~l~~ 320 (533)
+++-+++|+||+=.-+|...+..+...+..+ ..+-+|+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567789999999888877676666666655 33333333
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.42 E-value=8 Score=34.82 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.2
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
+++.|++|||||+.+
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=51.38 E-value=7.2 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999998
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=51.33 E-value=8.2 Score=35.77 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 460
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.30 E-value=8.4 Score=35.21 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 009494 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~ 188 (533)
+..+++.|+.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999984
No 461
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=51.27 E-value=7.7 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 462
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=51.22 E-value=8.7 Score=36.82 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHh
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~ 198 (533)
.|.-+.|.||+|||||+. +-++..++
T Consensus 89 ~g~ivgI~G~sGsGKSTL--~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT--ARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCEEEEEECCCCchHHHH--HHHHHhhc
Confidence 344577899999999984 33444443
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=51.06 E-value=12 Score=37.73 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHHHH
Q 009494 173 KSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ll 191 (533)
+.+++++++|+|||..+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999986443
No 464
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.00 E-value=7.4 Score=36.11 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 67778899999999998
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=50.80 E-value=7.4 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 466
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.74 E-value=8.6 Score=35.22 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 467
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.73 E-value=14 Score=31.99 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhHH
Q 009494 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~ 188 (533)
-++++|+.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999973
No 468
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=50.66 E-value=19 Score=38.52 Aligned_cols=70 Identities=3% Similarity=0.016 Sum_probs=47.6
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEcCcchHHHHHHHHc-CCceeecCHHHHHHHHHcCCCCCCCeeE
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRM 287 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iii~Tp~~l~~~l~~~~~~l~~~~~ 287 (533)
.+.++||++|+++-++.+++.++.. ++++..++|. ........... ..+|+||| +.+. ..+++. +++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~ 476 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASR 476 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcE
Confidence 3567999999999999888777654 5778888774 33333333433 47899999 3443 345677 777
Q ss_pred EEE
Q 009494 288 FVL 290 (533)
Q Consensus 288 vVv 290 (533)
||.
T Consensus 477 VI~ 479 (673)
T 2wv9_A 477 VID 479 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 469
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.64 E-value=6.2 Score=40.33 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 009494 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~~lv~a~TGsGKT~~~ 189 (533)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 470
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=50.52 E-value=7.6 Score=36.21 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 67778899999999998
No 471
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=50.47 E-value=30 Score=35.52 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=47.6
Q ss_pred CCCeEEEEcchhhHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEccc-cc----cc-C-CCCC
Q 009494 381 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LG----RG-V-ELLG 450 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l~~~L~~~---~~~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~~-~~----~G-l-di~~ 450 (533)
++++||.++++.-+....+.+.+. .++.+..+||+.+...+...+. ...+|+|+|.- +. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888877632 3889999999987654432221 23679999963 22 22 3 5667
Q ss_pred ccEEEE
Q 009494 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888776
No 472
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=50.12 E-value=12 Score=35.56 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.++-+.+.++.|+|||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557778999999997543
No 473
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=49.87 E-value=7.8 Score=36.14 Aligned_cols=17 Identities=59% Similarity=0.943 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778899999999998
No 474
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=49.50 E-value=7.1 Score=34.86 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+.+.|+.|||||++.
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999853
No 475
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=49.50 E-value=9.2 Score=35.28 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778899999999998
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.44 E-value=10 Score=33.05 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.9
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
++|.|++|||||.-+
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999743
No 477
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=49.37 E-value=9.8 Score=35.07 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 28 ~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST 44 (250)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 478
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.22 E-value=7.2 Score=42.60 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCcccCcccCCCCHHHHHHHHHc-CC--CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009494 131 PAPILSFSSCSLSQKLLQNIEAA-GY--DMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~-g~--~~p~p~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 188 (533)
..|-..|++.+.-+...+.|... -+ ..|.-++... +...+.+|+.||+|+|||+.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 34557899988888888888764 22 2222111100 11235699999999999974
No 479
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=49.14 E-value=15 Score=36.93 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
++-+++.++.|+|||+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3446778999999998543
No 480
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=49.00 E-value=7.5 Score=34.29 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+.++|++|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
No 481
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=48.90 E-value=11 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+.|+|++|||||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999999853
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.52 E-value=9.2 Score=36.83 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~ll 191 (533)
.++.+++.+|+|+|||..++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 455679999999999985443
No 483
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=48.47 E-value=9.6 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778999999999998
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=48.36 E-value=9.6 Score=35.23 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||+
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 485
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=47.92 E-value=12 Score=35.55 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009494 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 ~~~~lv~a~TGsGKT~~~l 190 (533)
++-+++.+++|+|||..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3456778999999998544
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=47.78 E-value=9.1 Score=33.25 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
.|+-+++.|+.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 46779999999999997543
No 487
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=47.50 E-value=20 Score=33.28 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHhhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|..+++.+.+|+||| ++.+-.+..-.. .+-++++++-.... .++.+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~---------~Ge~~~~~~~~e~~-~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK---------SDNLVGMFSISYPL-QLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH---------TTCEEEEEECSSCH-HHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH---------CCCcEEEEEEeCCH-HHHHHHHHHc
Confidence 4566788878888888 344434333222 35568887754333 5566666655
No 488
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=47.34 E-value=12 Score=40.32 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009494 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667778887 566899999999863
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=46.79 E-value=8 Score=36.50 Aligned_cols=16 Identities=31% Similarity=0.357 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 490
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=46.74 E-value=7.8 Score=41.63 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=47.8
Q ss_pred CCCeEEEEcchhhHHHH-HHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccc-----------c
Q 009494 381 TPPAVVYVGSRLGADLL-SNAISVTTG--MKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGR-----------G 445 (533)
Q Consensus 381 ~~~~LVf~~s~~~a~~l-~~~L~~~~~--~~~~~~h~~~~~~er~~~~~~f~~g~~~VLvaT~-~~~~-----------G 445 (533)
.+++||.++++.-+... ++.+.+..+ +.+..++|+.+..++...+. +..+|+|+|. .+.. .
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999999888888 888875444 78999999987554333222 5688999986 3332 2
Q ss_pred CCCCCccEEEE
Q 009494 446 VELLGVRQVII 456 (533)
Q Consensus 446 ldi~~v~~VI~ 456 (533)
+.+..+++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 45667788776
No 491
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=46.11 E-value=8.5 Score=35.38 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
-+.+.|++|||||+.+
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999854
No 492
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=46.04 E-value=31 Score=33.74 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=12.5
Q ss_pred EEEccCCCchhHHHHHHH
Q 009494 176 LVSANTGSGKTASFLVPV 193 (533)
Q Consensus 176 lv~a~TGsGKT~~~llp~ 193 (533)
+..+.-|.|||..+...+
T Consensus 148 v~s~KGGvGKTT~a~nLA 165 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACA 165 (373)
T ss_dssp EECSSTTSSHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHH
Confidence 345689999998765433
No 493
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.91 E-value=12 Score=40.83 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009494 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~~~l 190 (533)
...++++.||+|+|||..+-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34589999999999998643
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=45.89 E-value=20 Score=32.03 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=15.9
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009494 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~~~~~lv~a~TGsGKT~~~ 189 (533)
+.|.-+++.|+.|||||...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 45666888999999999854
No 495
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=45.65 E-value=38 Score=34.62 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCCCCCeEEEEEc--------CcchHHH---HHHHHc--CCceeecCHHHHHHHH
Q 009494 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVG--------GDAMARQ---VYRIQQ--GVELIVGTPGRLIDLL 275 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~g--------g~~~~~~---~~~l~~--~~~Iii~Tp~~l~~~l 275 (533)
.+.++||.++++..+..+...++.......++...+.| +.+..++ +..... ..+|+|||. .+
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~ 462 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VA 462 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CT
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hh
Confidence 45779999999999999999888764322244444443 4333322 223333 378999992 22
Q ss_pred HcCCCCCCCeeEEEE
Q 009494 276 MKHDIELDDIRMFVL 290 (533)
Q Consensus 276 ~~~~~~l~~~~~vVv 290 (533)
...+++..+++||.
T Consensus 463 -~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 -DEGIDIAECNLVIL 476 (555)
T ss_dssp -TCCEETTSCSEEEE
T ss_pred -hcCCccccCCEEEE
Confidence 34567888888876
No 496
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=44.81 E-value=10 Score=35.89 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009494 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~~~~~lv~a~TGsGKT~ 187 (533)
.|+-+.+.||.|||||.
T Consensus 63 ~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778999999999998
No 497
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.69 E-value=6.7 Score=34.74 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEEEccCCCchhHHH
Q 009494 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 ~lv~a~TGsGKT~~~ 189 (533)
+++.|+.|||||+.+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999843
No 498
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=44.62 E-value=9.4 Score=33.51 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 009494 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~ 189 (533)
.+.+.+++|||||..+
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 499
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=44.62 E-value=9.1 Score=36.00 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHHH
Q 009494 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~~lv~a~TGsGKT~~~l 190 (533)
-+.+.|+.|||||+++-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 500
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=44.62 E-value=24 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcchhhHHHHHHHHHhhcCCeEEEEeCCCC
Q 009494 379 HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 417 (533)
Q Consensus 379 ~~~~~~LVf~~s~~~a~~l~~~L~~~~~~~~~~~h~~~~ 417 (533)
..+.++++||.+-..+...+..|. ..|+.+..+.||+.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~-~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLS-QLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHH-TTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHH-HcCCCEEEEcCcHH
Confidence 456789999999888999999998 78888889999875
Done!