Query 009496
Match_columns 533
No_of_seqs 379 out of 2989
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2E-68 6.7E-73 556.7 49.4 391 119-515 40-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.8E-62 1.7E-66 506.6 47.1 397 122-520 2-414 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.6E-58 9E-63 477.5 38.5 373 130-512 32-406 (410)
4 1s2m_A Putative ATP-dependent 100.0 2E-56 6.8E-61 461.8 41.0 374 132-516 18-392 (400)
5 3eiq_A Eukaryotic initiation f 100.0 4.3E-57 1.5E-61 468.7 35.9 378 128-515 33-413 (414)
6 1xti_A Probable ATP-dependent 100.0 6.2E-55 2.1E-59 449.1 41.4 372 135-516 8-385 (391)
7 1hv8_A Putative ATP-dependent 100.0 4.5E-54 1.6E-58 438.3 44.8 359 133-508 4-364 (367)
8 1fuu_A Yeast initiation factor 100.0 7E-56 2.4E-60 456.5 24.1 374 130-514 16-391 (394)
9 3fht_A ATP-dependent RNA helic 100.0 1.2E-53 3.9E-58 442.6 38.9 367 131-510 21-401 (412)
10 3sqw_A ATP-dependent RNA helic 100.0 6.9E-54 2.4E-58 463.2 38.3 358 142-502 28-411 (579)
11 3pey_A ATP-dependent RNA helic 100.0 3.7E-53 1.3E-57 435.9 41.2 356 133-502 3-370 (395)
12 3i5x_A ATP-dependent RNA helic 100.0 1.7E-53 6E-58 459.3 37.2 358 142-502 79-462 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.5E-54 5E-59 458.5 21.2 375 123-510 77-468 (479)
14 2z0m_A 337AA long hypothetical 100.0 3.3E-51 1.1E-55 412.4 39.3 335 142-503 1-336 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 5.1E-50 1.7E-54 430.1 35.6 338 138-498 24-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 9.3E-52 3.2E-56 439.0 21.1 388 110-511 93-493 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-49 4E-54 423.0 34.9 341 134-499 1-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 4.8E-49 1.6E-53 408.6 29.2 325 145-502 9-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-46 6.4E-51 415.1 32.8 339 133-491 6-410 (715)
20 1tf5_A Preprotein translocase 100.0 4.1E-47 1.4E-51 408.0 23.9 357 105-491 35-547 (844)
21 4a2p_A RIG-I, retinoic acid in 100.0 5.2E-46 1.8E-50 400.3 30.4 331 154-491 4-510 (556)
22 2zj8_A DNA helicase, putative 100.0 1.2E-46 4.1E-51 416.5 24.8 333 136-491 2-389 (720)
23 2ykg_A Probable ATP-dependent 100.0 1.2E-46 4E-51 416.2 20.2 343 147-497 3-524 (696)
24 2p6r_A Afuhel308 helicase; pro 100.0 2.7E-46 9.4E-51 412.5 22.8 335 136-491 2-390 (702)
25 3l9o_A ATP-dependent RNA helic 100.0 1.9E-45 6.4E-50 418.4 30.2 327 136-489 163-597 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 1.4E-45 4.7E-50 396.6 27.3 334 157-497 4-515 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-44 4E-49 404.6 30.3 333 152-491 243-751 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 2.6E-44 8.7E-49 409.0 29.2 320 153-503 75-504 (1104)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 8.2E-45 2.8E-49 413.3 22.1 323 148-503 48-468 (1054)
30 2xgj_A ATP-dependent RNA helic 100.0 1E-42 3.5E-47 392.7 38.1 318 153-497 83-508 (1010)
31 2fsf_A Preprotein translocase 100.0 6.6E-44 2.3E-48 382.0 25.5 321 153-491 71-585 (853)
32 1wp9_A ATP-dependent RNA helic 100.0 1.8E-42 6E-47 365.6 35.7 322 157-491 9-477 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-43 4E-48 400.6 28.3 334 151-491 242-751 (936)
34 4f92_B U5 small nuclear ribonu 100.0 2.7E-43 9.2E-48 413.8 31.3 353 131-498 897-1317(1724)
35 1nkt_A Preprotein translocase 100.0 3.9E-42 1.3E-46 368.6 31.9 335 152-504 107-636 (922)
36 4gl2_A Interferon-induced heli 100.0 4.6E-44 1.6E-48 395.6 15.6 324 157-490 7-520 (699)
37 1gm5_A RECG; helicase, replica 100.0 1.9E-42 6.5E-47 379.1 23.8 337 144-506 356-713 (780)
38 4f92_B U5 small nuclear ribonu 100.0 6.6E-42 2.3E-46 402.0 28.4 339 154-499 76-483 (1724)
39 4a4z_A Antiviral helicase SKI2 100.0 5E-41 1.7E-45 379.0 31.9 310 154-487 37-490 (997)
40 2eyq_A TRCF, transcription-rep 100.0 2.2E-39 7.6E-44 370.8 39.0 323 140-489 586-922 (1151)
41 3fe2_A Probable ATP-dependent 100.0 3.6E-40 1.2E-44 316.3 27.0 238 108-347 2-240 (242)
42 2whx_A Serine protease/ntpase/ 100.0 2.6E-42 8.9E-47 371.4 10.9 325 140-513 155-505 (618)
43 2jlq_A Serine protease subunit 100.0 4.8E-41 1.6E-45 351.1 17.3 312 154-514 1-339 (451)
44 2oca_A DAR protein, ATP-depend 100.0 7.4E-41 2.5E-45 356.4 17.1 312 155-487 111-453 (510)
45 2xau_A PRE-mRNA-splicing facto 100.0 5.7E-39 2E-43 353.8 23.8 338 132-491 69-445 (773)
46 1yks_A Genome polyprotein [con 100.0 4.6E-41 1.6E-45 349.7 6.2 289 168-513 4-326 (440)
47 2fwr_A DNA repair protein RAD2 100.0 1.7E-39 5.9E-44 342.5 15.6 293 156-489 92-454 (472)
48 2wv9_A Flavivirin protease NS2 100.0 1.6E-39 5.4E-44 351.9 13.9 315 150-512 203-559 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 2.6E-39 9E-44 345.0 10.7 278 157-493 217-518 (666)
50 1wrb_A DJVLGB; RNA helicase, D 100.0 2.7E-37 9.2E-42 298.4 22.5 238 120-357 6-252 (253)
51 2z83_A Helicase/nucleoside tri 100.0 1E-38 3.6E-43 333.9 12.5 273 166-489 15-313 (459)
52 3dkp_A Probable ATP-dependent 100.0 2E-36 6.9E-41 290.8 22.0 229 113-347 3-243 (245)
53 3h1t_A Type I site-specific re 100.0 2.3E-37 8E-42 335.0 16.8 316 156-487 177-556 (590)
54 3iuy_A Probable ATP-dependent 100.0 5.3E-36 1.8E-40 284.6 23.7 215 127-343 11-227 (228)
55 2v6i_A RNA helicase; membrane, 100.0 2.6E-36 9E-41 313.2 22.8 268 171-486 1-288 (431)
56 3ber_A Probable ATP-dependent 100.0 1.2E-35 4E-40 285.8 24.0 207 132-345 40-248 (249)
57 3bor_A Human initiation factor 100.0 2.1E-35 7.2E-40 282.1 22.5 213 126-345 21-235 (237)
58 2oxc_A Probable ATP-dependent 100.0 4.7E-35 1.6E-39 278.5 23.4 211 126-344 15-228 (230)
59 2pl3_A Probable ATP-dependent 100.0 1.2E-34 4.1E-39 276.8 26.3 228 110-346 5-234 (236)
60 1vec_A ATP-dependent RNA helic 100.0 1.6E-34 5.4E-39 269.9 24.9 201 135-342 3-205 (206)
61 3rc3_A ATP-dependent RNA helic 100.0 3.3E-35 1.1E-39 317.1 22.6 286 162-496 145-451 (677)
62 3fmo_B ATP-dependent RNA helic 100.0 6.9E-35 2.4E-39 287.9 22.4 214 122-345 76-298 (300)
63 1q0u_A Bstdead; DEAD protein, 100.0 4.4E-35 1.5E-39 276.5 19.4 207 133-346 2-213 (219)
64 1z63_A Helicase of the SNF2/RA 100.0 1.5E-34 5.2E-39 306.9 24.9 312 156-489 36-453 (500)
65 1qde_A EIF4A, translation init 100.0 2.3E-34 7.8E-39 272.5 23.4 211 129-347 8-219 (224)
66 3dmq_A RNA polymerase-associat 100.0 2.8E-35 9.6E-40 332.7 19.9 332 156-502 152-626 (968)
67 2gxq_A Heat resistant RNA depe 100.0 1E-33 3.6E-38 264.5 25.4 203 136-344 2-205 (207)
68 3jux_A Protein translocase sub 100.0 3.9E-33 1.3E-37 292.8 31.7 318 153-491 72-589 (822)
69 3ly5_A ATP-dependent RNA helic 100.0 7.8E-34 2.7E-38 275.2 23.7 202 135-339 52-257 (262)
70 1t6n_A Probable ATP-dependent 100.0 1.6E-33 5.5E-38 265.9 24.3 209 128-343 7-219 (220)
71 3mwy_W Chromo domain-containin 100.0 4E-31 1.4E-35 294.5 30.7 319 156-489 235-684 (800)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.2E-32 2.5E-36 302.7 23.5 313 156-487 270-707 (1038)
73 1z3i_X Similar to RAD54-like; 100.0 2.7E-30 9.4E-35 280.9 33.8 339 156-504 54-545 (644)
74 2p6n_A ATP-dependent RNA helic 100.0 1.3E-29 4.3E-34 233.0 20.2 180 334-517 10-190 (191)
75 2ipc_A Preprotein translocase 100.0 3.8E-28 1.3E-32 259.6 30.7 319 152-491 75-700 (997)
76 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.2E-28 4.3E-33 225.4 19.0 169 348-518 14-182 (185)
77 1c4o_A DNA nucleotide excision 100.0 2.3E-27 7.8E-32 257.8 31.4 176 314-499 380-560 (664)
78 2d7d_A Uvrabc system protein B 100.0 4.8E-27 1.6E-31 255.1 27.1 175 314-498 386-565 (661)
79 2yqp_A Probable ATP-dependent 100.0 1E-29 3.5E-34 170.3 3.7 54 19-72 2-55 (60)
80 2hjv_A ATP-dependent RNA helic 99.9 1.4E-26 4.8E-31 207.5 19.5 153 349-504 5-157 (163)
81 1fuk_A Eukaryotic initiation f 99.9 4.9E-27 1.7E-31 211.0 15.8 159 353-514 3-162 (165)
82 1t5i_A C_terminal domain of A 99.9 8.1E-27 2.8E-31 210.8 15.6 162 351-515 3-165 (172)
83 2rb4_A ATP-dependent RNA helic 99.9 2.8E-26 9.5E-31 208.1 17.4 157 350-509 4-167 (175)
84 3eaq_A Heat resistant RNA depe 99.9 4.4E-25 1.5E-29 206.4 17.7 151 354-507 6-156 (212)
85 3i32_A Heat resistant RNA depe 99.9 1.7E-24 5.7E-29 212.1 17.1 149 354-505 3-151 (300)
86 3b6e_A Interferon-induced heli 99.9 2.1E-24 7.2E-29 202.4 11.8 165 154-323 30-216 (216)
87 2yjt_D ATP-dependent RNA helic 99.8 9.7E-26 3.3E-30 203.5 0.0 150 353-505 3-153 (170)
88 2vl7_A XPD; helicase, unknown 99.9 2E-22 6.7E-27 214.7 18.9 302 153-489 4-521 (540)
89 3llm_A ATP-dependent RNA helic 99.9 3.1E-22 1.1E-26 190.4 16.4 181 145-340 49-232 (235)
90 3crv_A XPD/RAD3 related DNA he 99.9 2.3E-20 7.8E-25 199.5 28.6 306 157-489 3-531 (551)
91 1rif_A DAR protein, DNA helica 99.9 2.6E-22 8.8E-27 196.5 10.7 155 156-329 112-267 (282)
92 2fz4_A DNA repair protein RAD2 99.8 3.2E-19 1.1E-23 169.5 15.1 139 156-327 92-231 (237)
93 4a15_A XPD helicase, ATP-depen 99.8 2.9E-18 9.9E-23 184.7 21.3 315 157-489 3-584 (620)
94 1z5z_A Helicase of the SNF2/RA 99.8 1E-18 3.6E-23 168.9 11.5 129 361-489 92-224 (271)
95 1w36_D RECD, exodeoxyribonucle 98.8 6.3E-09 2.2E-13 111.8 9.2 142 159-321 151-296 (608)
96 3upu_A ATP-dependent DNA helic 98.1 1.2E-05 4E-10 83.5 11.9 69 151-228 19-92 (459)
97 2gk6_A Regulator of nonsense t 98.1 1.4E-05 4.7E-10 86.3 12.4 70 155-233 178-247 (624)
98 2xzl_A ATP-dependent helicase 98.0 2E-05 6.8E-10 87.0 11.7 70 155-233 358-427 (802)
99 4b3f_X DNA-binding protein smu 98.0 1E-05 3.5E-10 87.7 9.2 68 156-233 188-256 (646)
100 3e1s_A Exodeoxyribonuclease V, 98.0 2.2E-05 7.4E-10 83.5 11.2 63 156-228 188-250 (574)
101 2wjy_A Regulator of nonsense t 98.0 2.8E-05 9.6E-10 85.7 12.1 70 155-233 354-423 (800)
102 3lfu_A DNA helicase II; SF1 he 97.9 0.00055 1.9E-08 74.2 20.3 71 156-234 8-78 (647)
103 3hgt_A HDA1 complex subunit 3; 97.7 7.3E-05 2.5E-09 72.4 8.3 122 361-488 105-236 (328)
104 2o0j_A Terminase, DNA packagin 97.6 0.00064 2.2E-08 68.0 14.4 72 157-236 163-234 (385)
105 3cpe_A Terminase, DNA packagin 97.2 0.0041 1.4E-07 66.4 15.0 120 157-298 163-287 (592)
106 3ec2_A DNA replication protein 97.1 0.0025 8.6E-08 56.6 10.6 31 159-189 16-55 (180)
107 3vkw_A Replicase large subunit 96.9 0.0026 8.9E-08 64.5 9.5 106 174-322 163-268 (446)
108 2orw_A Thymidine kinase; TMTK, 96.7 0.0034 1.2E-07 56.1 7.6 40 171-220 2-41 (184)
109 2kjq_A DNAA-related protein; s 96.6 0.0029 1E-07 54.4 6.1 18 171-188 35-52 (149)
110 1xx6_A Thymidine kinase; NESG, 96.4 0.0075 2.6E-07 54.1 7.6 39 172-220 8-46 (191)
111 2b8t_A Thymidine kinase; deoxy 96.3 0.015 5.1E-07 53.5 9.4 92 171-297 11-102 (223)
112 2j9r_A Thymidine kinase; TK1, 96.2 0.011 3.8E-07 53.7 7.5 40 172-221 28-67 (214)
113 3te6_A Regulatory protein SIR3 96.0 0.082 2.8E-06 51.3 13.2 26 171-197 44-69 (318)
114 1uaa_A REP helicase, protein ( 95.9 0.012 4.2E-07 63.8 7.7 71 157-235 2-72 (673)
115 1pjr_A PCRA; DNA repair, DNA r 95.9 0.019 6.6E-07 62.8 9.2 71 156-234 10-80 (724)
116 3e2i_A Thymidine kinase; Zn-bi 95.8 0.019 6.4E-07 52.1 6.9 41 171-221 27-67 (219)
117 2w58_A DNAI, primosome compone 95.7 0.11 3.8E-06 46.6 12.1 17 173-189 55-71 (202)
118 1l8q_A Chromosomal replication 95.7 0.073 2.5E-06 51.9 11.7 18 172-189 37-54 (324)
119 2orv_A Thymidine kinase; TP4A 95.6 0.027 9.1E-07 51.7 7.6 40 171-220 18-57 (234)
120 1a5t_A Delta prime, HOLB; zinc 95.6 0.045 1.5E-06 53.7 9.8 33 158-190 3-42 (334)
121 3kl4_A SRP54, signal recogniti 95.3 0.058 2E-06 54.7 9.7 54 283-336 178-235 (433)
122 2v1u_A Cell division control p 95.3 0.051 1.7E-06 54.1 9.3 19 171-189 43-61 (387)
123 2zpa_A Uncharacterized protein 95.3 0.033 1.1E-06 59.3 8.1 112 157-324 175-288 (671)
124 2z4s_A Chromosomal replication 95.2 0.14 4.8E-06 52.3 12.3 43 284-326 194-239 (440)
125 3u4q_A ATP-dependent helicase/ 95.2 0.028 9.6E-07 65.2 7.8 71 157-233 10-80 (1232)
126 2qby_B CDC6 homolog 3, cell di 95.1 0.071 2.4E-06 53.1 9.6 18 172-189 45-62 (384)
127 2chg_A Replication factor C sm 95.0 0.32 1.1E-05 43.6 13.1 40 283-323 101-140 (226)
128 1w4r_A Thymidine kinase; type 95.0 0.049 1.7E-06 48.6 6.9 39 171-219 19-57 (195)
129 1d2n_A N-ethylmaleimide-sensit 94.9 0.23 7.8E-06 46.9 12.0 17 173-189 65-81 (272)
130 1fnn_A CDC6P, cell division co 94.6 0.11 3.6E-06 51.8 9.3 16 174-189 46-61 (389)
131 1jbk_A CLPB protein; beta barr 94.6 0.19 6.5E-06 44.0 9.9 18 172-189 43-60 (195)
132 3h4m_A Proteasome-activating n 94.5 0.18 6E-06 47.9 10.2 54 133-189 12-68 (285)
133 3u61_B DNA polymerase accessor 94.4 0.091 3.1E-06 51.1 8.1 39 283-321 104-143 (324)
134 3syl_A Protein CBBX; photosynt 94.2 0.083 2.9E-06 50.9 7.4 18 172-189 67-84 (309)
135 2p65_A Hypothetical protein PF 94.2 0.12 4.1E-06 45.2 7.8 18 172-189 43-60 (187)
136 3bos_A Putative DNA replicatio 94.2 0.047 1.6E-06 50.3 5.2 19 171-189 51-69 (242)
137 3pfi_A Holliday junction ATP-d 94.0 0.47 1.6E-05 46.2 12.2 17 173-189 56-72 (338)
138 1gm5_A RECG; helicase, replica 93.9 0.15 5.3E-06 55.8 9.3 76 381-456 417-496 (780)
139 1sxj_E Activator 1 40 kDa subu 93.9 0.18 6.3E-06 49.5 9.1 40 283-323 133-172 (354)
140 3eie_A Vacuolar protein sortin 93.8 0.45 1.6E-05 46.1 11.7 51 133-189 13-68 (322)
141 2dr3_A UPF0273 protein PH0284; 93.8 0.47 1.6E-05 43.7 11.3 50 171-231 22-71 (247)
142 1g5t_A COB(I)alamin adenosyltr 93.7 0.35 1.2E-05 43.1 9.6 136 172-333 28-172 (196)
143 2qby_A CDC6 homolog 1, cell di 93.6 0.17 5.7E-06 50.2 8.4 18 172-189 45-62 (386)
144 3dm5_A SRP54, signal recogniti 93.6 0.6 2.1E-05 47.3 12.3 56 174-242 102-159 (443)
145 2r6a_A DNAB helicase, replicat 93.4 0.38 1.3E-05 49.3 10.8 39 171-218 202-240 (454)
146 2q6t_A DNAB replication FORK h 93.3 0.38 1.3E-05 49.1 10.6 39 171-218 199-237 (444)
147 1iqp_A RFCS; clamp loader, ext 93.3 0.38 1.3E-05 46.4 10.2 42 283-325 109-150 (327)
148 1njg_A DNA polymerase III subu 93.1 2.6 8.9E-05 37.9 15.2 16 174-189 47-62 (250)
149 1sxj_D Activator 1 41 kDa subu 92.6 0.57 2E-05 45.7 10.5 41 283-324 132-172 (353)
150 2gno_A DNA polymerase III, gam 92.3 0.69 2.4E-05 44.5 10.3 42 283-325 81-122 (305)
151 1jr3_A DNA polymerase III subu 92.3 1.7 5.8E-05 42.6 13.5 40 283-323 118-157 (373)
152 4a1f_A DNAB helicase, replicat 92.2 0.13 4.6E-06 50.2 5.1 38 171-218 45-82 (338)
153 1sxj_A Activator 1 95 kDa subu 92.1 0.35 1.2E-05 50.4 8.6 41 283-324 147-189 (516)
154 2w0m_A SSO2452; RECA, SSPF, un 92.0 0.61 2.1E-05 42.3 9.3 19 171-189 22-40 (235)
155 3vfd_A Spastin; ATPase, microt 91.8 0.52 1.8E-05 47.1 9.1 19 171-189 147-165 (389)
156 1cr0_A DNA primase/helicase; R 91.7 1.3 4.5E-05 42.1 11.5 20 170-189 33-52 (296)
157 3pvs_A Replication-associated 91.5 0.13 4.6E-06 52.5 4.4 17 173-189 51-67 (447)
158 1sxj_B Activator 1 37 kDa subu 91.5 0.7 2.4E-05 44.4 9.4 16 174-189 44-59 (323)
159 1nlf_A Regulatory protein REPA 91.2 1.3 4.3E-05 41.9 10.8 23 169-191 27-49 (279)
160 3oiy_A Reverse gyrase helicase 91.2 0.63 2.2E-05 46.7 9.2 81 379-459 62-148 (414)
161 3bh0_A DNAB-like replicative h 91.2 0.7 2.4E-05 44.7 9.0 51 170-231 66-116 (315)
162 2cvh_A DNA repair and recombin 91.1 1.8 6.1E-05 38.8 11.2 21 171-191 19-39 (220)
163 1u6p_A GAG polyprotein; MLV, A 90.9 0.19 6.6E-06 34.7 3.2 20 30-49 17-36 (56)
164 1a6b_B Momulv, zinc finger pro 90.7 0.099 3.4E-06 33.3 1.6 20 30-49 4-23 (40)
165 1sxj_C Activator 1 40 kDa subu 90.5 1.5 5E-05 42.8 10.7 41 283-324 109-149 (340)
166 1w5s_A Origin recognition comp 90.1 0.67 2.3E-05 46.3 8.1 17 173-189 51-69 (412)
167 1hqc_A RUVB; extended AAA-ATPa 89.9 0.45 1.5E-05 45.9 6.4 18 172-189 38-55 (324)
168 2qen_A Walker-type ATPase; unk 89.7 3.9 0.00013 39.4 13.2 18 171-188 30-47 (350)
169 2p6n_A ATP-dependent RNA helic 89.3 3.6 0.00012 36.3 11.4 73 210-292 54-130 (191)
170 3co5_A Putative two-component 89.1 0.31 1.1E-05 41.0 4.0 21 168-188 23-43 (143)
171 2eyq_A TRCF, transcription-rep 88.9 1.3 4.3E-05 51.0 10.0 77 380-456 651-731 (1151)
172 3n70_A Transport activator; si 88.9 0.31 1.1E-05 41.1 3.8 20 170-189 22-41 (145)
173 1n0w_A DNA repair protein RAD5 88.9 0.84 2.9E-05 41.8 7.2 21 171-191 23-43 (243)
174 2fna_A Conserved hypothetical 88.8 6.3 0.00021 38.0 14.0 53 267-323 123-178 (357)
175 3hu3_A Transitional endoplasmi 88.8 2.2 7.5E-05 43.9 10.9 19 171-189 237-255 (489)
176 3bgw_A DNAB-like replicative h 88.5 0.9 3.1E-05 46.3 7.6 38 171-218 196-233 (444)
177 2eyu_A Twitching motility prot 88.4 0.31 1.1E-05 45.8 3.8 20 169-188 22-41 (261)
178 2chq_A Replication factor C sm 88.4 0.68 2.3E-05 44.4 6.4 16 174-189 40-55 (319)
179 1vma_A Cell division protein F 87.8 8 0.00027 37.0 13.5 19 172-190 104-122 (306)
180 2z43_A DNA repair and recombin 87.0 3 0.0001 40.3 10.1 59 171-233 106-165 (324)
181 1t6n_A Probable ATP-dependent 86.8 2.8 9.5E-05 37.6 9.2 75 381-458 82-166 (220)
182 1p9r_A General secretion pathw 86.8 0.96 3.3E-05 45.6 6.5 27 162-188 155-183 (418)
183 2ehv_A Hypothetical protein PH 86.6 0.85 2.9E-05 41.9 5.7 21 170-190 28-48 (251)
184 4ddu_A Reverse gyrase; topoiso 86.5 1.6 5.4E-05 49.9 8.8 81 379-459 119-205 (1104)
185 2i1q_A DNA repair and recombin 86.5 4.6 0.00016 38.8 11.2 21 171-191 97-117 (322)
186 3m6a_A ATP-dependent protease 86.4 0.73 2.5E-05 48.3 5.7 19 171-189 107-125 (543)
187 2yhs_A FTSY, cell division pro 86.0 4.8 0.00016 41.2 11.2 23 174-198 295-317 (503)
188 3hjh_A Transcription-repair-co 85.9 2.2 7.4E-05 43.9 8.7 52 171-235 13-64 (483)
189 2l82_A Designed protein OR32; 85.8 4.1 0.00014 31.6 8.0 50 385-435 6-55 (162)
190 2hjv_A ATP-dependent RNA helic 85.1 4.2 0.00014 34.6 9.0 74 210-293 35-112 (163)
191 3jvv_A Twitching mobility prot 85.0 1.1 3.7E-05 44.1 5.8 18 171-188 122-139 (356)
192 4b4t_M 26S protease regulatory 85.0 0.36 1.2E-05 48.8 2.3 54 132-188 175-231 (434)
193 2rb4_A ATP-dependent RNA helic 84.8 5.3 0.00018 34.4 9.7 74 209-292 33-110 (175)
194 1oyw_A RECQ helicase, ATP-depe 84.4 4.6 0.00016 41.9 10.6 75 381-456 65-145 (523)
195 1e9r_A Conjugal transfer prote 84.2 1 3.5E-05 45.6 5.4 44 171-224 52-95 (437)
196 3io5_A Recombination and repai 84.0 1.6 5.4E-05 42.0 6.2 43 171-222 28-70 (333)
197 2ysa_A Retinoblastoma-binding 83.9 0.33 1.1E-05 33.4 1.0 15 35-49 6-20 (55)
198 1q57_A DNA primase/helicase; d 83.8 1.6 5.6E-05 45.1 6.8 39 171-218 241-279 (503)
199 3e70_C DPA, signal recognition 83.7 5.4 0.00019 38.6 10.1 51 285-335 212-264 (328)
200 3b85_A Phosphate starvation-in 83.5 1.5 5.1E-05 39.5 5.6 31 158-188 8-38 (208)
201 3lda_A DNA repair protein RAD5 83.4 3.5 0.00012 41.2 8.8 20 171-190 177-196 (400)
202 1pzn_A RAD51, DNA repair and r 83.1 8.4 0.00029 37.6 11.3 20 171-190 130-149 (349)
203 1fuk_A Eukaryotic initiation f 82.5 5.2 0.00018 34.1 8.6 75 209-293 29-107 (165)
204 3fe2_A Probable ATP-dependent 82.5 5.1 0.00017 36.6 9.1 75 380-458 101-184 (242)
205 3eaq_A Heat resistant RNA depe 82.4 5.4 0.00018 35.7 9.0 71 210-290 31-105 (212)
206 2l8b_A Protein TRAI, DNA helic 82.3 2.3 7.7E-05 37.2 5.9 57 159-224 36-94 (189)
207 1qvr_A CLPB protein; coiled co 82.1 3.2 0.00011 46.1 8.7 19 172-190 191-209 (854)
208 2qgz_A Helicase loader, putati 81.6 2.3 7.8E-05 40.8 6.4 18 172-189 152-169 (308)
209 2oap_1 GSPE-2, type II secreti 81.1 1.5 5E-05 45.5 5.1 39 148-188 237-276 (511)
210 2gza_A Type IV secretion syste 81.0 1.1 3.7E-05 44.3 4.0 20 169-188 172-191 (361)
211 1dsq_A Nucleic acid binding pr 81.0 0.27 9.2E-06 28.0 -0.3 13 37-49 3-15 (26)
212 3cmu_A Protein RECA, recombina 81.0 0.96 3.3E-05 54.2 4.1 42 171-222 1426-1467(2050)
213 1t5i_A C_terminal domain of A 80.9 6.7 0.00023 33.7 8.8 76 209-294 30-109 (172)
214 3pxi_A Negative regulator of g 80.6 7.3 0.00025 42.4 10.8 16 174-189 523-538 (758)
215 1xwi_A SKD1 protein; VPS4B, AA 80.3 2.1 7E-05 41.5 5.6 51 133-189 7-62 (322)
216 2zts_A Putative uncharacterize 80.1 1.6 5.5E-05 40.0 4.6 51 171-231 29-79 (251)
217 3hws_A ATP-dependent CLP prote 79.7 2.9 0.0001 41.0 6.7 19 171-189 50-68 (363)
218 4b4t_J 26S protease regulatory 79.3 0.7 2.4E-05 46.1 1.9 54 133-189 143-199 (405)
219 2i4i_A ATP-dependent RNA helic 79.3 9.2 0.00031 37.8 10.4 72 209-290 275-350 (417)
220 1vec_A ATP-dependent RNA helic 79.1 7.5 0.00026 34.2 8.7 72 381-456 71-152 (206)
221 2gxq_A Heat resistant RNA depe 78.8 6.4 0.00022 34.6 8.1 74 380-457 71-151 (207)
222 2hqh_E Restin; beta/BETA struc 78.6 0.63 2.1E-05 26.1 0.7 14 36-49 3-16 (26)
223 1kgd_A CASK, peripheral plasma 78.5 1.2 4.2E-05 38.8 3.1 18 171-188 4-21 (180)
224 1wrb_A DJVLGB; RNA helicase, D 78.4 18 0.00061 33.0 11.4 72 381-456 100-180 (253)
225 3cf0_A Transitional endoplasmi 78.0 2.7 9.4E-05 40.0 5.7 54 133-189 10-66 (301)
226 2oxc_A Probable ATP-dependent 77.7 5.7 0.00019 35.9 7.6 72 380-456 91-172 (230)
227 2jgn_A DBX, DDX3, ATP-dependen 77.6 5.8 0.0002 34.6 7.3 74 209-292 45-122 (185)
228 2pt7_A CAG-ALFA; ATPase, prote 77.5 1.2 4.1E-05 43.4 2.9 18 170-187 169-186 (330)
229 3ber_A Probable ATP-dependent 77.5 8 0.00027 35.5 8.6 73 381-457 111-193 (249)
230 2ewv_A Twitching motility prot 77.4 1.4 4.7E-05 43.7 3.4 19 170-188 134-152 (372)
231 3iuy_A Probable ATP-dependent 77.2 6 0.0002 35.6 7.6 74 380-457 93-174 (228)
232 3bor_A Human initiation factor 77.2 5.5 0.00019 36.2 7.3 74 380-456 97-179 (237)
233 2bjv_A PSP operon transcriptio 77.1 1.7 5.8E-05 40.5 3.9 20 170-189 27-46 (265)
234 3a8t_A Adenylate isopentenyltr 77.1 1.2 4E-05 43.4 2.7 18 173-190 41-58 (339)
235 3nbx_X ATPase RAVA; AAA+ ATPas 77.0 2.5 8.6E-05 43.6 5.3 26 163-188 32-57 (500)
236 3vaa_A Shikimate kinase, SK; s 76.9 1.5 5.1E-05 39.0 3.2 20 171-190 24-43 (199)
237 1qhx_A CPT, protein (chloramph 76.9 1.4 5E-05 38.0 3.1 18 172-189 3-20 (178)
238 3trf_A Shikimate kinase, SK; a 76.9 1.5 5E-05 38.3 3.1 19 172-190 5-23 (185)
239 1nc8_A Nucleocapsid protein; H 76.8 0.63 2.1E-05 27.2 0.4 13 37-49 7-19 (29)
240 2v1x_A ATP-dependent DNA helic 76.7 3.5 0.00012 43.5 6.6 59 381-440 84-144 (591)
241 2qmh_A HPR kinase/phosphorylas 76.6 1.3 4.4E-05 39.5 2.6 19 171-189 33-51 (205)
242 3iij_A Coilin-interacting nucl 76.5 1.2 4E-05 38.8 2.4 21 170-190 9-29 (180)
243 4ag6_A VIRB4 ATPase, type IV s 76.1 2.3 7.7E-05 42.4 4.6 42 171-222 34-75 (392)
244 1gku_B Reverse gyrase, TOP-RG; 76.1 6.2 0.00021 44.8 8.7 77 379-457 97-182 (1054)
245 1rj9_A FTSY, signal recognitio 76.0 2.9 9.8E-05 40.1 5.1 25 172-198 102-126 (304)
246 3tau_A Guanylate kinase, GMP k 75.9 1.6 5.6E-05 39.1 3.2 19 171-189 7-25 (208)
247 3exa_A TRNA delta(2)-isopenten 75.8 1.4 4.6E-05 42.5 2.7 18 173-190 4-21 (322)
248 3i5x_A ATP-dependent RNA helic 75.7 27 0.00091 36.2 13.1 80 208-294 337-420 (563)
249 4b4t_L 26S protease subunit RP 75.2 1.3 4.4E-05 44.8 2.5 55 132-189 175-232 (437)
250 1u0j_A DNA replication protein 74.9 5.9 0.0002 37.0 6.8 43 145-190 74-122 (267)
251 2d7d_A Uvrabc system protein B 74.8 32 0.0011 36.7 13.5 94 209-312 444-541 (661)
252 3uk6_A RUVB-like 2; hexameric 74.7 2.7 9.4E-05 41.1 4.8 18 172-189 70-87 (368)
253 3nwn_A Kinesin-like protein KI 74.2 2.2 7.4E-05 41.9 3.8 25 165-189 96-122 (359)
254 3foz_A TRNA delta(2)-isopenten 74.0 1.7 5.8E-05 41.7 2.9 17 174-190 12-28 (316)
255 3lw7_A Adenylate kinase relate 73.9 1.4 4.9E-05 37.6 2.2 17 174-190 3-19 (179)
256 2j41_A Guanylate kinase; GMP, 73.9 1.9 6.4E-05 38.2 3.1 20 170-189 4-23 (207)
257 2ze6_A Isopentenyl transferase 73.8 1.7 5.9E-05 40.3 2.9 17 174-190 3-19 (253)
258 2pl3_A Probable ATP-dependent 73.7 7.7 0.00026 35.1 7.3 73 380-457 96-178 (236)
259 1kht_A Adenylate kinase; phosp 73.6 2 6.8E-05 37.5 3.1 19 171-189 2-20 (192)
260 2r44_A Uncharacterized protein 73.5 1.8 6.3E-05 41.8 3.1 23 167-189 41-63 (331)
261 1bg2_A Kinesin; motor protein, 73.5 2.4 8.3E-05 41.0 3.9 25 165-189 69-95 (325)
262 4b4t_H 26S protease regulatory 73.3 1.7 6E-05 44.0 2.9 55 132-189 203-260 (467)
263 3b5x_A Lipid A export ATP-bind 73.2 6.6 0.00023 41.3 7.6 41 282-322 496-536 (582)
264 1y63_A LMAJ004144AAA protein; 73.2 2.1 7.3E-05 37.4 3.2 19 171-189 9-27 (184)
265 1lvg_A Guanylate kinase, GMP k 73.1 2.1 7.1E-05 38.1 3.1 18 171-188 3-20 (198)
266 3ney_A 55 kDa erythrocyte memb 73.0 2.1 7.2E-05 38.1 3.1 18 171-188 18-35 (197)
267 4b4t_K 26S protease regulatory 72.9 1.2 4E-05 45.0 1.6 55 132-189 166-223 (428)
268 1tf7_A KAIC; homohexamer, hexa 72.9 22 0.00076 36.7 11.5 19 171-189 280-298 (525)
269 1xti_A Probable ATP-dependent 72.6 13 0.00043 36.3 9.2 73 381-456 76-158 (391)
270 1kag_A SKI, shikimate kinase I 72.6 2.3 8E-05 36.4 3.3 18 172-189 4-21 (173)
271 3dc4_A Kinesin-like protein NO 72.5 2.3 7.9E-05 41.5 3.5 25 165-189 86-112 (344)
272 1ofh_A ATP-dependent HSL prote 72.4 6.9 0.00024 36.9 6.9 19 171-189 49-67 (310)
273 2px0_A Flagellar biosynthesis 72.2 4.2 0.00014 38.8 5.2 21 171-191 104-124 (296)
274 3sqw_A ATP-dependent RNA helic 72.0 38 0.0013 35.3 13.2 80 208-294 286-369 (579)
275 3b9q_A Chloroplast SRP recepto 72.0 2.9 9.8E-05 40.1 4.0 26 171-198 99-124 (302)
276 1v8k_A Kinesin-like protein KI 72.0 2.6 8.9E-05 42.1 3.8 25 165-189 146-172 (410)
277 2vvg_A Kinesin-2; motor protei 71.9 2.8 9.6E-05 41.0 3.9 25 165-189 81-107 (350)
278 2qor_A Guanylate kinase; phosp 71.8 2.5 8.6E-05 37.6 3.4 20 170-189 10-29 (204)
279 4etp_A Kinesin-like protein KA 71.7 2.8 9.4E-05 41.9 3.9 25 165-189 132-158 (403)
280 4b4t_I 26S protease regulatory 71.7 2.4 8.3E-05 42.5 3.5 55 132-189 176-233 (437)
281 2y65_A Kinesin, kinesin heavy 71.5 2.9 9.8E-05 41.2 3.9 25 165-189 76-102 (365)
282 3t0q_A AGR253WP; kinesin, alph 71.5 2.6 9E-05 41.2 3.7 25 165-189 77-103 (349)
283 2h58_A Kinesin-like protein KI 71.5 2.9 9.9E-05 40.5 3.9 26 164-189 71-98 (330)
284 2qz4_A Paraplegin; AAA+, SPG7, 71.4 2.3 8E-05 39.2 3.2 19 171-189 38-56 (262)
285 3b6u_A Kinesin-like protein KI 71.3 2.8 9.6E-05 41.3 3.8 25 165-189 93-119 (372)
286 1c4o_A DNA nucleotide excision 71.1 1E+02 0.0035 32.7 16.4 78 209-296 438-519 (664)
287 2zfi_A Kinesin-like protein KI 71.1 3 0.0001 41.1 3.9 25 165-189 81-107 (366)
288 1t5c_A CENP-E protein, centrom 71.1 2.9 9.8E-05 40.9 3.8 25 165-189 69-95 (349)
289 1zp6_A Hypothetical protein AT 71.0 2 6.9E-05 37.5 2.5 18 171-188 8-25 (191)
290 1goj_A Kinesin, kinesin heavy 71.0 2.9 0.0001 40.9 3.9 24 166-189 73-98 (355)
291 4f4c_A Multidrug resistance pr 70.9 1.5 5.3E-05 51.1 2.1 18 171-188 1104-1121(1321)
292 2nr8_A Kinesin-like protein KI 70.7 2.9 0.0001 41.0 3.8 25 165-189 95-121 (358)
293 4a14_A Kinesin, kinesin-like p 70.7 3.1 0.0001 40.7 3.9 25 165-189 75-101 (344)
294 1ojl_A Transcriptional regulat 70.7 2.7 9.1E-05 40.3 3.5 19 171-189 24-42 (304)
295 3lre_A Kinesin-like protein KI 70.7 3 0.0001 40.9 3.9 25 165-189 97-123 (355)
296 3b9p_A CG5977-PA, isoform A; A 70.6 2.3 7.9E-05 40.3 3.0 19 171-189 53-71 (297)
297 3gbj_A KIF13B protein; kinesin 70.5 3 0.0001 40.9 3.8 25 165-189 84-110 (354)
298 3tr0_A Guanylate kinase, GMP k 70.5 2.6 9E-05 37.2 3.2 18 171-188 6-23 (205)
299 1x88_A Kinesin-like protein KI 70.5 2.8 9.6E-05 41.2 3.6 25 165-189 80-106 (359)
300 3crm_A TRNA delta(2)-isopenten 70.1 2.3 8E-05 41.0 2.9 17 174-190 7-23 (323)
301 3ly5_A ATP-dependent RNA helic 70.0 18 0.00062 33.3 9.1 74 380-457 125-208 (262)
302 1f9v_A Kinesin-like protein KA 69.6 2.6 8.9E-05 41.2 3.1 25 165-189 76-102 (347)
303 2heh_A KIF2C protein; kinesin, 69.5 3.2 0.00011 41.1 3.7 25 165-189 126-152 (387)
304 3kb2_A SPBC2 prophage-derived 69.4 2.6 8.9E-05 35.9 2.9 17 174-190 3-19 (173)
305 1ex7_A Guanylate kinase; subst 69.4 2.3 7.8E-05 37.5 2.5 16 173-188 2-17 (186)
306 3cm0_A Adenylate kinase; ATP-b 69.2 2.1 7.1E-05 37.3 2.2 20 171-190 3-22 (186)
307 3i32_A Heat resistant RNA depe 69.1 12 0.0004 35.7 7.6 74 210-293 28-105 (300)
308 3cob_A Kinesin heavy chain-lik 69.1 2.8 9.7E-05 41.3 3.3 25 165-189 71-97 (369)
309 1u94_A RECA protein, recombina 68.9 5.1 0.00018 39.3 5.1 39 171-219 62-100 (356)
310 1w36_B RECB, exodeoxyribonucle 68.8 7.8 0.00027 44.6 7.4 60 174-233 18-79 (1180)
311 3a00_A Guanylate kinase, GMP k 68.7 3.1 0.00011 36.4 3.2 16 173-188 2-17 (186)
312 3u06_A Protein claret segregat 68.7 3.2 0.00011 41.6 3.6 26 164-189 129-156 (412)
313 2wbe_C Bipolar kinesin KRP-130 68.6 3.1 0.00011 41.1 3.5 25 165-189 92-118 (373)
314 3d3q_A TRNA delta(2)-isopenten 68.6 2.6 9E-05 41.0 2.9 17 174-190 9-25 (340)
315 2zr9_A Protein RECA, recombina 68.6 5 0.00017 39.2 5.0 39 171-219 60-98 (349)
316 3d8b_A Fidgetin-like protein 1 68.6 7.2 0.00025 38.1 6.2 19 171-189 116-134 (357)
317 1lv7_A FTSH; alpha/beta domain 68.5 2.9 9.8E-05 38.7 3.1 18 172-189 45-62 (257)
318 1ly1_A Polynucleotide kinase; 68.3 2.9 9.8E-05 36.0 2.9 16 174-189 4-19 (181)
319 2r8r_A Sensor protein; KDPD, P 68.2 5.6 0.00019 36.2 4.8 22 174-195 8-29 (228)
320 3c8u_A Fructokinase; YP_612366 68.2 3.2 0.00011 37.0 3.3 18 171-188 21-38 (208)
321 1wp9_A ATP-dependent RNA helic 67.8 16 0.00054 36.6 8.9 72 380-456 51-131 (494)
322 4eun_A Thermoresistant glucoki 67.8 3.3 0.00011 36.7 3.2 19 171-189 28-46 (200)
323 2og2_A Putative signal recogni 67.7 3.9 0.00013 40.2 4.0 25 172-198 157-181 (359)
324 2owm_A Nckin3-434, related to 67.7 3.7 0.00013 41.5 3.9 25 165-189 128-154 (443)
325 2c9o_A RUVB-like 1; hexameric 67.7 4.9 0.00017 40.9 4.9 19 171-189 62-80 (456)
326 3bfn_A Kinesin-like protein KI 67.6 3 0.0001 41.4 3.1 24 166-189 91-116 (388)
327 2x8a_A Nuclear valosin-contain 67.5 1.3 4.6E-05 41.7 0.6 53 133-188 5-60 (274)
328 1ixz_A ATP-dependent metallopr 67.5 2.2 7.5E-05 39.4 2.1 53 133-188 11-65 (254)
329 3nwj_A ATSK2; P loop, shikimat 67.5 3.7 0.00013 38.1 3.6 19 171-189 47-65 (250)
330 1z6g_A Guanylate kinase; struc 67.2 3.6 0.00012 37.1 3.4 19 170-188 21-39 (218)
331 3fht_A ATP-dependent RNA helic 67.2 19 0.00064 35.4 9.1 73 210-292 266-342 (412)
332 2yvu_A Probable adenylyl-sulfa 67.0 4.5 0.00015 35.2 3.9 20 171-190 12-31 (186)
333 1tev_A UMP-CMP kinase; ploop, 66.9 2.8 9.7E-05 36.5 2.6 19 172-190 3-21 (196)
334 4gp7_A Metallophosphoesterase; 66.7 2.4 8.1E-05 36.6 2.0 19 171-189 8-26 (171)
335 1knq_A Gluconate kinase; ALFA/ 66.4 3 0.0001 35.8 2.6 19 171-189 7-25 (175)
336 3pey_A ATP-dependent RNA helic 66.3 21 0.00074 34.6 9.3 77 209-295 242-322 (395)
337 1um8_A ATP-dependent CLP prote 66.1 3.6 0.00012 40.6 3.4 19 171-189 71-89 (376)
338 1c9k_A COBU, adenosylcobinamid 66.1 3.3 0.00011 36.3 2.7 34 175-222 2-35 (180)
339 1zuh_A Shikimate kinase; alpha 66.1 3.5 0.00012 35.2 3.0 18 173-190 8-25 (168)
340 2rep_A Kinesin-like protein KI 66.0 3.5 0.00012 40.7 3.2 25 165-189 107-133 (376)
341 1ye8_A Protein THEP1, hypothet 66.0 4.2 0.00014 35.4 3.5 15 174-188 2-16 (178)
342 1f2t_A RAD50 ABC-ATPase; DNA d 65.9 4.3 0.00015 34.2 3.4 15 174-188 25-39 (149)
343 3t15_A Ribulose bisphosphate c 65.8 3.1 0.00011 39.6 2.8 17 173-189 37-53 (293)
344 3eph_A TRNA isopentenyltransfe 65.4 3.1 0.00011 41.4 2.7 17 174-190 4-20 (409)
345 1ak2_A Adenylate kinase isoenz 65.4 3.6 0.00012 37.4 3.1 20 171-190 15-34 (233)
346 2c95_A Adenylate kinase 1; tra 65.3 3.9 0.00013 35.7 3.2 20 171-190 8-27 (196)
347 1tue_A Replication protein E1; 65.2 2.9 9.9E-05 37.5 2.2 43 145-189 29-75 (212)
348 2qp9_X Vacuolar protein sortin 65.0 3.8 0.00013 40.2 3.3 18 172-189 84-101 (355)
349 2i3b_A HCR-ntpase, human cance 64.6 5.1 0.00017 35.3 3.8 41 282-324 103-145 (189)
350 2r2a_A Uncharacterized protein 64.6 4.2 0.00014 36.2 3.2 17 174-190 7-23 (199)
351 1xp8_A RECA protein, recombina 64.6 6.7 0.00023 38.6 5.0 39 171-219 73-111 (366)
352 3uie_A Adenylyl-sulfate kinase 64.5 3.5 0.00012 36.5 2.7 19 171-189 24-42 (200)
353 2j37_W Signal recognition part 64.5 30 0.001 35.5 10.1 18 174-191 103-120 (504)
354 1xjc_A MOBB protein homolog; s 64.3 6.1 0.00021 34.1 4.1 15 174-188 6-20 (169)
355 4akg_A Glutathione S-transfera 64.0 6.5 0.00022 48.9 5.7 49 142-191 890-942 (2695)
356 1via_A Shikimate kinase; struc 63.9 4.3 0.00015 34.9 3.1 17 174-190 6-22 (175)
357 3kta_A Chromosome segregation 63.9 4.1 0.00014 35.2 3.1 23 174-198 28-50 (182)
358 3ice_A Transcription terminati 63.9 12 0.00041 37.1 6.5 31 159-189 158-191 (422)
359 1qde_A EIF4A, translation init 63.8 10 0.00034 33.9 5.8 72 380-456 81-161 (224)
360 3t61_A Gluconokinase; PSI-biol 63.7 3.9 0.00013 36.1 2.9 17 173-189 19-35 (202)
361 2rhm_A Putative kinase; P-loop 63.7 3.5 0.00012 35.9 2.6 18 172-189 5-22 (193)
362 1hv8_A Putative ATP-dependent 63.5 25 0.00086 33.6 9.1 74 209-292 237-314 (367)
363 2iyv_A Shikimate kinase, SK; t 63.3 4.7 0.00016 34.9 3.3 18 173-190 3-20 (184)
364 3hr8_A Protein RECA; alpha and 63.3 6.6 0.00023 38.4 4.6 42 171-222 60-101 (356)
365 2v54_A DTMP kinase, thymidylat 63.2 4.5 0.00015 35.6 3.2 19 171-189 3-21 (204)
366 1iy2_A ATP-dependent metallopr 63.2 2.9 0.0001 39.2 2.0 53 133-188 35-89 (278)
367 3dkp_A Probable ATP-dependent 63.1 7.4 0.00025 35.4 4.8 76 380-458 97-183 (245)
368 1znw_A Guanylate kinase, GMP k 63.0 4.6 0.00016 35.9 3.2 21 168-188 16-36 (207)
369 2v9p_A Replication protein E1; 62.8 5.1 0.00017 38.3 3.6 18 171-188 125-142 (305)
370 1aky_A Adenylate kinase; ATP:A 62.5 4.7 0.00016 36.2 3.2 19 172-190 4-22 (220)
371 3u4q_B ATP-dependent helicase/ 62.5 6.3 0.00022 45.3 5.0 30 383-413 344-374 (1166)
372 2ius_A DNA translocase FTSK; n 62.4 9.6 0.00033 39.2 5.9 19 171-189 166-184 (512)
373 3fb4_A Adenylate kinase; psych 62.3 4.2 0.00015 36.3 2.9 17 174-190 2-18 (216)
374 1s2m_A Putative ATP-dependent 62.3 26 0.0009 34.2 9.1 74 209-292 257-334 (400)
375 1zu4_A FTSY; GTPase, signal re 62.0 5.8 0.0002 38.2 4.0 19 172-190 105-123 (320)
376 2j0s_A ATP-dependent RNA helic 62.0 25 0.00085 34.5 8.9 73 210-292 276-352 (410)
377 3fmo_B ATP-dependent RNA helic 61.5 14 0.00049 34.9 6.7 71 381-458 162-243 (300)
378 1ry6_A Internal kinesin; kines 61.5 5.2 0.00018 39.2 3.5 19 171-189 82-102 (360)
379 2r62_A Cell division protease 61.4 2.5 8.5E-05 39.3 1.2 18 172-189 44-61 (268)
380 2db3_A ATP-dependent RNA helic 61.4 32 0.0011 34.4 9.6 70 212-291 302-375 (434)
381 1zak_A Adenylate kinase; ATP:A 61.3 5 0.00017 36.0 3.2 19 172-190 5-23 (222)
382 1e6c_A Shikimate kinase; phosp 61.3 5.1 0.00017 34.1 3.1 18 173-190 3-20 (173)
383 2cdn_A Adenylate kinase; phosp 61.3 5.2 0.00018 35.3 3.2 19 172-190 20-38 (201)
384 3dl0_A Adenylate kinase; phosp 61.3 4.6 0.00016 36.1 2.9 17 174-190 2-18 (216)
385 3lnc_A Guanylate kinase, GMP k 61.2 3.8 0.00013 37.2 2.4 18 171-188 26-43 (231)
386 2plr_A DTMP kinase, probable t 61.1 4.1 0.00014 36.0 2.6 19 171-189 3-21 (213)
387 2bwj_A Adenylate kinase 5; pho 61.0 5.1 0.00017 35.1 3.1 19 171-189 11-29 (199)
388 2bdt_A BH3686; alpha-beta prot 60.9 3.6 0.00012 35.9 2.1 17 173-189 3-19 (189)
389 1zd8_A GTP:AMP phosphotransfer 60.9 4.8 0.00016 36.4 3.0 18 172-189 7-24 (227)
390 1gvn_B Zeta; postsegregational 60.7 4.6 0.00016 38.3 2.9 17 173-189 34-50 (287)
391 1nks_A Adenylate kinase; therm 60.7 4.6 0.00016 35.1 2.8 16 174-189 3-18 (194)
392 1sky_E F1-ATPase, F1-ATP synth 60.5 24 0.00083 35.7 8.3 25 165-189 141-168 (473)
393 4fcw_A Chaperone protein CLPB; 60.5 4.3 0.00015 38.5 2.8 17 173-189 48-64 (311)
394 1yks_A Genome polyprotein [con 60.4 10 0.00034 38.3 5.6 68 210-289 177-245 (440)
395 3sr0_A Adenylate kinase; phosp 60.3 4.9 0.00017 35.9 2.9 18 174-191 2-19 (206)
396 1qf9_A UMP/CMP kinase, protein 60.3 4.7 0.00016 35.0 2.8 17 174-190 8-24 (194)
397 1s96_A Guanylate kinase, GMP k 60.2 5.5 0.00019 36.0 3.2 20 169-188 13-32 (219)
398 2iut_A DNA translocase FTSK; n 60.1 11 0.00037 39.4 5.7 25 173-198 215-239 (574)
399 1m7g_A Adenylylsulfate kinase; 60.1 6 0.00021 35.2 3.5 29 160-189 14-42 (211)
400 1cke_A CK, MSSA, protein (cyti 59.9 5.2 0.00018 35.9 3.1 18 173-190 6-23 (227)
401 3cmw_A Protein RECA, recombina 59.8 5.2 0.00018 47.4 3.6 51 171-234 1430-1480(1706)
402 2pez_A Bifunctional 3'-phospho 59.5 4.9 0.00017 34.6 2.7 19 171-189 4-22 (179)
403 3umf_A Adenylate kinase; rossm 59.3 5.3 0.00018 36.1 2.9 19 173-191 30-48 (217)
404 2qt1_A Nicotinamide riboside k 59.0 4.8 0.00016 35.7 2.6 19 171-189 20-38 (207)
405 2wwf_A Thymidilate kinase, put 58.7 5.6 0.00019 35.2 3.0 20 171-190 9-28 (212)
406 3tif_A Uncharacterized ABC tra 58.7 5.6 0.00019 36.4 3.1 17 171-187 30-46 (235)
407 1in4_A RUVB, holliday junction 58.5 5.5 0.00019 38.5 3.1 16 173-188 52-67 (334)
408 3tqc_A Pantothenate kinase; bi 58.2 18 0.00061 34.7 6.7 22 175-198 95-116 (321)
409 1g8p_A Magnesium-chelatase 38 58.1 3.8 0.00013 39.7 1.9 19 171-189 44-62 (350)
410 2jaq_A Deoxyguanosine kinase; 57.8 5.7 0.0002 34.8 2.9 16 174-189 2-17 (205)
411 3be4_A Adenylate kinase; malar 57.7 5.8 0.0002 35.5 3.0 19 172-190 5-23 (217)
412 2vli_A Antibiotic resistance p 57.6 5 0.00017 34.6 2.4 19 172-190 5-23 (183)
413 2pt5_A Shikimate kinase, SK; a 57.6 6 0.0002 33.5 2.9 16 174-189 2-17 (168)
414 2zan_A Vacuolar protein sortin 57.5 5.6 0.00019 40.3 3.1 54 132-189 128-184 (444)
415 3asz_A Uridine kinase; cytidin 57.4 5.2 0.00018 35.5 2.6 18 171-188 5-22 (211)
416 1rz3_A Hypothetical protein rb 57.3 8.6 0.00029 33.9 4.0 17 173-189 23-39 (201)
417 1q0u_A Bstdead; DEAD protein, 57.2 8.6 0.00029 34.3 4.1 72 381-456 72-156 (219)
418 1ukz_A Uridylate kinase; trans 57.2 6 0.0002 34.9 2.9 16 174-189 17-32 (203)
419 1htw_A HI0065; nucleotide-bind 57.1 6.6 0.00023 33.4 3.0 17 171-187 32-48 (158)
420 3pxg_A Negative regulator of g 57.1 8.2 0.00028 39.4 4.3 20 171-190 200-219 (468)
421 1nn5_A Similar to deoxythymidy 57.0 6.4 0.00022 34.9 3.1 20 171-190 8-27 (215)
422 3k1j_A LON protease, ATP-depen 56.7 8.9 0.0003 40.5 4.6 22 168-189 56-77 (604)
423 1fuu_A Yeast initiation factor 56.5 32 0.0011 33.4 8.5 72 380-456 88-168 (394)
424 1nij_A Hypothetical protein YJ 56.4 9.3 0.00032 36.6 4.3 14 175-188 7-20 (318)
425 4a74_A DNA repair and recombin 56.4 5.4 0.00019 35.7 2.6 18 171-188 24-41 (231)
426 3qf7_A RAD50; ABC-ATPase, ATPa 56.4 6.5 0.00022 38.7 3.2 16 174-189 25-40 (365)
427 3qks_A DNA double-strand break 56.3 7.5 0.00026 34.5 3.4 23 174-198 25-47 (203)
428 1e4v_A Adenylate kinase; trans 56.0 6.1 0.00021 35.3 2.8 17 174-190 2-18 (214)
429 1jjv_A Dephospho-COA kinase; P 56.0 6.4 0.00022 34.8 2.9 16 174-189 4-19 (206)
430 2xau_A PRE-mRNA-splicing facto 55.9 49 0.0017 36.0 10.4 76 209-290 302-393 (773)
431 2pbr_A DTMP kinase, thymidylat 55.9 6.5 0.00022 34.1 2.9 15 175-189 3-17 (195)
432 1uf9_A TT1252 protein; P-loop, 55.5 6.3 0.00022 34.5 2.8 16 174-189 10-25 (203)
433 2if2_A Dephospho-COA kinase; a 55.3 6.4 0.00022 34.7 2.8 16 174-189 3-18 (204)
434 3auy_A DNA double-strand break 55.2 7 0.00024 38.5 3.3 21 174-196 27-47 (371)
435 1v5w_A DMC1, meiotic recombina 55.1 7.6 0.00026 37.8 3.5 59 171-233 121-180 (343)
436 2cbz_A Multidrug resistance-as 55.1 7 0.00024 35.8 3.1 17 171-187 30-46 (237)
437 3nh6_A ATP-binding cassette SU 54.7 3.8 0.00013 39.3 1.2 18 171-188 79-96 (306)
438 2z0h_A DTMP kinase, thymidylat 54.6 7 0.00024 34.0 2.9 16 175-190 3-18 (197)
439 4e22_A Cytidylate kinase; P-lo 54.4 7.4 0.00025 35.9 3.2 19 171-189 26-44 (252)
440 1g41_A Heat shock protein HSLU 54.4 7.6 0.00026 39.2 3.4 18 172-189 50-67 (444)
441 2yjt_D ATP-dependent RNA helic 59.3 2.7 9.1E-05 36.2 0.0 74 209-292 29-106 (170)
442 3tlx_A Adenylate kinase 2; str 54.0 7 0.00024 35.8 2.9 20 171-190 28-47 (243)
443 1sgw_A Putative ABC transporte 53.7 8.2 0.00028 34.7 3.2 17 171-187 34-50 (214)
444 2xb4_A Adenylate kinase; ATP-b 53.7 7.2 0.00025 35.1 2.9 17 174-190 2-18 (223)
445 3f9v_A Minichromosome maintena 53.6 6 0.00021 41.8 2.6 15 174-188 329-343 (595)
446 2v3c_C SRP54, signal recogniti 53.4 12 0.00039 37.8 4.6 19 173-191 100-118 (432)
447 3vkg_A Dynein heavy chain, cyt 53.2 17 0.00058 45.9 6.7 48 142-190 873-924 (3245)
448 3a4m_A L-seryl-tRNA(SEC) kinas 53.0 7.4 0.00025 36.1 2.9 18 173-190 5-22 (260)
449 2ghi_A Transport protein; mult 53.0 7.8 0.00027 36.0 3.1 17 171-187 45-61 (260)
450 2pze_A Cystic fibrosis transme 52.8 8 0.00027 35.1 3.1 17 171-187 33-49 (229)
451 2bbw_A Adenylate kinase 4, AK4 52.7 8.1 0.00028 35.3 3.1 17 172-188 27-43 (246)
452 2ff7_A Alpha-hemolysin translo 52.5 8.1 0.00028 35.6 3.1 17 171-187 34-50 (247)
453 1ls1_A Signal recognition part 52.4 11 0.00036 35.9 3.9 20 171-190 97-116 (295)
454 3gfo_A Cobalt import ATP-bindi 52.2 8 0.00027 36.3 3.0 17 171-187 33-49 (275)
455 2f1r_A Molybdopterin-guanine d 52.2 4.3 0.00015 35.1 1.0 16 174-189 4-19 (171)
456 2p5t_B PEZT; postsegregational 52.2 5.5 0.00019 36.8 1.8 18 172-189 32-49 (253)
457 2grj_A Dephospho-COA kinase; T 51.9 8.3 0.00029 34.0 2.9 17 174-190 14-30 (192)
458 4a2p_A RIG-I, retinoic acid in 51.7 29 0.001 35.6 7.6 72 381-456 55-136 (556)
459 3bs4_A Uncharacterized protein 51.6 15 0.00052 34.0 4.8 52 171-233 20-71 (260)
460 2ffh_A Protein (FFH); SRP54, s 51.5 13 0.00045 37.2 4.6 19 172-190 98-116 (425)
461 2pcj_A ABC transporter, lipopr 51.5 8.3 0.00028 34.9 2.9 17 171-187 29-45 (224)
462 1np6_A Molybdopterin-guanine d 51.2 14 0.00047 32.0 4.1 15 174-188 8-22 (174)
463 1g6h_A High-affinity branched- 50.8 8.9 0.00031 35.5 3.1 17 171-187 32-48 (257)
464 1j8m_F SRP54, signal recogniti 50.7 11 0.00036 35.9 3.6 20 172-191 98-117 (297)
465 1mv5_A LMRA, multidrug resista 50.7 7.6 0.00026 35.6 2.5 17 171-187 27-43 (243)
466 4g1u_C Hemin import ATP-bindin 50.5 9 0.00031 35.7 3.0 17 171-187 36-52 (266)
467 3aez_A Pantothenate kinase; tr 50.3 9.4 0.00032 36.6 3.2 25 172-198 90-114 (312)
468 1ji0_A ABC transporter; ATP bi 50.1 9.3 0.00032 35.0 3.1 17 171-187 31-47 (240)
469 2ce7_A Cell division protein F 50.0 6.7 0.00023 40.1 2.2 17 173-189 50-66 (476)
470 4f4c_A Multidrug resistance pr 50.0 2.2 7.4E-05 49.8 -1.6 31 282-312 570-600 (1321)
471 2zu0_C Probable ATP-dependent 49.8 9.9 0.00034 35.4 3.2 17 171-187 45-61 (267)
472 1vht_A Dephospho-COA kinase; s 49.8 9.1 0.00031 34.1 2.9 16 174-189 6-21 (218)
473 3tqf_A HPR(Ser) kinase; transf 49.7 8.3 0.00028 33.5 2.4 20 171-190 15-34 (181)
474 3eiq_A Eukaryotic initiation f 49.6 28 0.00096 34.1 6.8 74 380-456 107-189 (414)
475 3pxi_A Negative regulator of g 49.5 13 0.00043 40.6 4.5 20 171-190 200-219 (758)
476 4h1g_A Maltose binding protein 49.5 10 0.00034 41.1 3.6 25 165-189 454-480 (715)
477 1b0u_A Histidine permease; ABC 49.5 9.6 0.00033 35.4 3.1 17 171-187 31-47 (262)
478 4edh_A DTMP kinase, thymidylat 49.5 17 0.00059 32.5 4.7 20 170-189 4-23 (213)
479 2vhj_A Ntpase P4, P4; non- hyd 49.3 9.2 0.00031 36.8 2.9 21 171-191 122-142 (331)
480 1vpl_A ABC transporter, ATP-bi 49.1 9.9 0.00034 35.2 3.1 17 171-187 40-56 (256)
481 2qi9_C Vitamin B12 import ATP- 49.1 9.9 0.00034 35.1 3.1 17 171-187 25-41 (249)
482 2ixe_A Antigen peptide transpo 48.8 9.9 0.00034 35.5 3.1 17 171-187 44-60 (271)
483 2olj_A Amino acid ABC transpor 48.6 10 0.00035 35.3 3.1 17 171-187 49-65 (263)
484 1odf_A YGR205W, hypothetical 3 48.4 9.6 0.00033 36.1 2.9 16 174-189 33-48 (290)
485 2v6i_A RNA helicase; membrane, 48.1 23 0.00079 35.5 5.9 67 210-288 171-238 (431)
486 3cf2_A TER ATPase, transitiona 48.1 9.4 0.00032 41.7 3.1 57 132-189 471-528 (806)
487 2yz2_A Putative ABC transporte 48.0 10 0.00036 35.3 3.1 17 171-187 32-48 (266)
488 2nq2_C Hypothetical ABC transp 47.9 10 0.00035 35.0 3.0 17 171-187 30-46 (253)
489 2ihy_A ABC transporter, ATP-bi 47.8 10 0.00036 35.6 3.1 17 171-187 46-62 (279)
490 3cmw_A Protein RECA, recombina 47.7 22 0.00075 42.2 6.2 40 171-220 33-72 (1706)
491 1uj2_A Uridine-cytidine kinase 47.3 10 0.00035 34.8 2.9 17 174-190 24-40 (252)
492 3fkq_A NTRC-like two-domain pr 46.7 26 0.00089 34.3 5.9 19 176-194 148-166 (373)
493 1q3t_A Cytidylate kinase; nucl 46.7 12 0.00041 33.9 3.2 20 171-190 15-34 (236)
494 2a51_A Nucleocapsid protein; s 46.4 7.1 0.00024 24.4 1.1 14 36-49 21-34 (39)
495 2ec7_A GAG polyprotein (PR55GA 45.9 4.8 0.00016 26.7 0.2 11 38-48 8-18 (49)
496 3ake_A Cytidylate kinase; CMP 45.9 11 0.00039 32.9 2.9 17 174-190 4-20 (208)
497 2wv9_A Flavivirin protease NS2 45.8 29 0.00098 37.1 6.4 68 210-289 410-478 (673)
498 1ltq_A Polynucleotide kinase; 45.5 11 0.00038 35.5 2.9 16 174-189 4-19 (301)
499 2onk_A Molybdate/tungstate ABC 45.2 12 0.00041 34.3 2.9 15 173-187 25-39 (240)
500 2h92_A Cytidylate kinase; ross 44.8 14 0.00047 32.8 3.3 18 172-189 3-20 (219)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-68 Score=556.68 Aligned_cols=391 Identities=34% Similarity=0.616 Sum_probs=362.1
Q ss_pred hhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHH
Q 009496 119 KRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 119 ~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
..+++.+.|...|.|+.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++++|+||||||++|++|++.++.
T Consensus 40 ~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 40 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp GGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC
Q 009496 199 NIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH 278 (533)
Q Consensus 199 ~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~ 278 (533)
..... ....++++||++||++|+.|++++++++....++++..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 120 ~~~~~--~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 197 (434)
T 2db3_A 120 EDPHE--LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197 (434)
T ss_dssp HSCCC--CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred hcccc--cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC
Confidence 63221 1234788999999999999999999999988888999999999998888888889999999999999999988
Q ss_pred CCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC---CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccce
Q 009496 279 DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVK 355 (533)
Q Consensus 279 ~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~---~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 355 (533)
...+.++++||+||||+|++++|..++..++..+ +..|+++||||+|..+..++..++.++..+.++........+.
T Consensus 198 ~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 277 (434)
T 2db3_A 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK 277 (434)
T ss_dssp SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEE
T ss_pred CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccc
Confidence 8889999999999999999999999999999885 5789999999999999999999999999999888777778889
Q ss_pred EEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009496 356 QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 356 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~V 435 (533)
+.+..+....|...+.+++.... .++||||+++..|+.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|
T Consensus 278 ~~~~~~~~~~k~~~l~~~l~~~~---~~~lVF~~t~~~a~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 353 (434)
T 2db3_A 278 QTIYEVNKYAKRSKLIEILSEQA---DGTIVFVETKRGADFLASFLS-EKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353 (434)
T ss_dssp EEEEECCGGGHHHHHHHHHHHCC---TTEEEECSSHHHHHHHHHHHH-HTTCCEEEESTTSCHHHHHHHHHHHHTSSCSE
T ss_pred eEEEEeCcHHHHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 99999998899999999887653 359999999999999999998 78999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEec-CcCHHHHHHHHHHHHhcCCCCCHHHHh
Q 009496 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN-EENKNLFQELVDILKSSGAGIPRELIN 514 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~-~~~~~~~~~l~~~l~~~~~~~p~~l~~ 514 (533)
||||+++++|+|+|++++||+||+|.++++|+||+||+||.|+.|.|++|++ .++...+.++.+.++.+++.+|++|.+
T Consensus 354 LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 458889999999999999999999876
Q ss_pred c
Q 009496 515 S 515 (533)
Q Consensus 515 ~ 515 (533)
+
T Consensus 434 ~ 434 (434)
T 2db3_A 434 C 434 (434)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.8e-62 Score=506.55 Aligned_cols=397 Identities=34% Similarity=0.610 Sum_probs=356.7
Q ss_pred CceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhh
Q 009496 122 EINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIR 201 (533)
Q Consensus 122 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~ 201 (533)
.+.+.|...|.++.+|+++++++.+.++|...||..|+|+|.++++.++.|++++++||||||||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred hc-----------ccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHH
Q 009496 202 LH-----------HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGR 270 (533)
Q Consensus 202 ~~-----------~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~ 270 (533)
.. ......++++||++||++|+.|+.+.++++....++++..++||.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 0011234789999999999999999999999888899999999999888888888889999999999
Q ss_pred HHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--C---CCcEEEecccCcHHHHHHHHhhcCCeEEEEeC
Q 009496 271 LIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S---LPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 271 l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 345 (533)
|.+++......+.++++||+||||++.+++|...+..++... + ..+++++|||+++.+..+...++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999999888889999999999999999999999999998853 2 56899999999999999999999998888887
Q ss_pred CCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHH
Q 009496 346 KPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 346 ~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~ 425 (533)
........+.+.+.++....+...+.+++... ..+.++||||+++..++.++..|. ..++.+..+||++++.+|..++
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLY-HEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCCccCceEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHH-HCCCCeeEecCCCCHHHHHHHH
Confidence 77667778888888888888888888888764 345689999999999999999998 7899999999999999999999
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcC
Q 009496 426 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 505 (533)
Q Consensus 426 ~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 505 (533)
+.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+.++..+
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhchhccC
Q 009496 506 AGIPRELINSRYTVG 520 (533)
Q Consensus 506 ~~~p~~l~~~~~~~~ 520 (533)
+.+|.++.+++..+.
T Consensus 400 ~~~~~~l~~~~~~~~ 414 (417)
T 2i4i_A 400 QEVPSWLENMAYEHH 414 (417)
T ss_dssp CCCCHHHHHHHTCSC
T ss_pred CcCCHHHHHHHHhhh
Confidence 999999999987654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-58 Score=477.52 Aligned_cols=373 Identities=27% Similarity=0.551 Sum_probs=337.6
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCC
Q 009496 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
.+.+..+|+++++++.+.+.|...||..|+|+|.++++.++.|+++++++|||||||++|++|++..+.. ...
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------~~~ 104 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------QVR 104 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------TSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------ccC
Confidence 3456678999999999999999999999999999999999999999999999999999999999876532 135
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEE
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 289 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vV 289 (533)
++++||++||++|+.|+.+.++++....++.+..+.||.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 67899999999999999999999998888999999999999888888888899999999999999998888889999999
Q ss_pred EeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh-hH
Q 009496 290 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 367 (533)
Q Consensus 290 vDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~ 367 (533)
+||||++.+++|...+..++..+ +..|++++|||++..+..+...++.++..+...........+.+.+..+.... +.
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHH
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999998887 56899999999999998888888888888877666666777788877776655 66
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 009496 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+.+++.... .+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 265 ~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 265 DTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMR-EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHH-hCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 77777776543 4589999999999999999998 77999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHH
Q 009496 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPREL 512 (533)
Q Consensus 448 i~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l 512 (533)
+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...++.+.++++.....+|..+
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999999999999999999999999999999999999988877777543
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2e-56 Score=461.84 Aligned_cols=374 Identities=29% Similarity=0.504 Sum_probs=332.6
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCc
Q 009496 132 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 211 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 211 (533)
.+..+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++.++.. ...++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-------~~~~~ 90 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-------KLNKI 90 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------TSCSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------ccCCc
Confidence 35568999999999999999999999999999999999999999999999999999999999887542 13456
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEe
Q 009496 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvD 291 (533)
++||++|+++|+.|+.+.++++....++++..+.|+.....+...+..+++|+|+||++|.+++.+....+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 89999999999999999999999888899999999988887777777789999999999999998887788999999999
Q ss_pred ccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHH
Q 009496 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 370 (533)
|||++.+.+|...+..++..+ +..+++++|||++..+..+....+..+..+..... .....+.+.+.......+...+
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHH
Confidence 999999888888888888877 46799999999999999888888888776655432 3445667777777777787777
Q ss_pred HHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009496 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
..++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 250 ~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 250 NTLFSKL--QINQAIIFCNSTNRVELLAKKIT-DLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHS--CCSEEEEECSSHHHHHHHHHHHH-HHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHhhc--CCCcEEEEEecHHHHHHHHHHHH-hcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 7777653 34689999999999999999998 77999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhch
Q 009496 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSR 516 (533)
Q Consensus 451 v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~ 516 (533)
+++||++++|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|.++.+..
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 392 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSL 392 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGGG
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999998888888887766554
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-57 Score=468.74 Aligned_cols=378 Identities=32% Similarity=0.553 Sum_probs=324.5
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCC
Q 009496 128 DAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 128 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
...+....+|+++++++.+.+.|...||..|+|+|.++++.++.|+++++.||||||||++|++|++..+.. .
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------~ 105 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------D 105 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------T
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------c
Confidence 345667788999999999999999999999999999999999999999999999999999999999987643 1
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHH-cCCceeecChHHHHHHHHcCCCCCCCee
Q 009496 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIR 286 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~ 286 (533)
..+.++||++||++|+.|+.+.+++++...+..+....||.....+...+. .+++|+|+||++|.+.+.+....+.+++
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~ 185 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 185 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCC
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 356789999999999999999999999888889999999998888777776 6689999999999999999888889999
Q ss_pred EEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh
Q 009496 287 MFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK 365 (533)
Q Consensus 287 ~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 365 (533)
+||+||||++.+++|...+..++..+ +..+++++|||++..+..+...++.++..+...........+.+.+.......
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 99999999999999999999999888 67899999999999999999999999988887777777777777777666554
Q ss_pred -hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 009496 366 -KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 366 -k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
+...+.+++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMH-ARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHH-TTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHH-hcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 667777776554 34689999999999999999998 77999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhc
Q 009496 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINS 515 (533)
Q Consensus 445 Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~ 515 (533)
|+|+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++.+...+..+.++++.....+|.++.++
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.2e-55 Score=449.05 Aligned_cols=372 Identities=29% Similarity=0.488 Sum_probs=326.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009496 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------~~~~~~~l 80 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------VTGQVSVL 80 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-------CTTCCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-------cCCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999876542 13456899
Q ss_pred EEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEec
Q 009496 215 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDE 292 (533)
|++||++|+.|+.+.++++.... ++++..+.||.....+...+..+ ++|+|+||++|..++......+.++++||+||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 99999999999999999998776 68889999998877766666554 79999999999999998888899999999999
Q ss_pred cchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCC-CCCccceEEEEEecchhhHHH
Q 009496 293 VDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPN-MPNKAVKQLAIWVESNKKKQK 369 (533)
Q Consensus 293 ah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~ 369 (533)
||++.+ .++...+..++... +..+++++|||+++.+..+...++.++..+...... .....+.+.+.......+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 999987 47888888888877 478999999999999999988888888777665443 334556777777778888888
Q ss_pred HHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 009496 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 449 (533)
Q Consensus 370 l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~ 449 (533)
+.+++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 241 l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 241 LFDLLDVL--EFNQVVIFVKSVQRCIALAQLLV-EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHS--CCSEEEEECSCHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcc
Confidence 88888764 45689999999999999999998 7799999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc-CHHHHHHHHHHHHhcCCCCCHHHHhch
Q 009496 450 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSSGAGIPRELINSR 516 (533)
Q Consensus 450 ~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~~~~~~p~~l~~~~ 516 (533)
++++||++++|.|...|+||+||+||.|+.|.|++|+++. +..++..+.+.+.....++|.++....
T Consensus 318 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (391)
T 1xti_A 318 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISS 385 (391)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCCGGG
T ss_pred cCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccccHHH
Confidence 9999999999999999999999999999999999999876 556788888888888888887644433
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.5e-54 Score=438.32 Aligned_cols=359 Identities=29% Similarity=0.520 Sum_probs=320.3
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCc
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 211 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 211 (533)
...+|+++++++.+.+.|.+.||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++..+.. ..++
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------~~~~ 75 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--------NNGI 75 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------SSSC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------cCCC
Confidence 3457999999999999999999999999999999999988 799999999999999999999876542 3567
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEe
Q 009496 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvD 291 (533)
++||++|+++|+.|+.+.++++....++.+..+.||.....+...+. +++|+|+||++|.+.+......+.++++||+|
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 154 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILD 154 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEe
Confidence 89999999999999999999998877888999999988877666654 68999999999999999888888999999999
Q ss_pred ccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHH
Q 009496 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 370 (533)
|||++.++++...+..++..+ +..+++++|||+++....+...++.++..+.... ...+.+.+.......+...+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHH
Confidence 999999999999999988887 5789999999999999888888888776665433 23566677777777888888
Q ss_pred HHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009496 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
.+++. ..+.++||||+++..++.+++.|. ..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 231 ~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~ 306 (367)
T 1hv8_A 231 CRLLK---NKEFYGLVFCKTKRDTKELASMLR-DIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVND 306 (367)
T ss_dssp HHHHC---STTCCEEEECSSHHHHHHHHHHHH-HTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSC
T ss_pred HHHHh---cCCCcEEEEECCHHHHHHHHHHHH-hcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCccc
Confidence 87775 345689999999999999999998 77999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCC
Q 009496 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGI 508 (533)
Q Consensus 451 v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~ 508 (533)
+++||++++|.|...|+||+||+||.|+.|.+++++++.+...+..+.+.++.....+
T Consensus 307 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 307 LNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp CSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred CCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999999999999999999888876654443
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7e-56 Score=456.48 Aligned_cols=374 Identities=28% Similarity=0.539 Sum_probs=187.1
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCC
Q 009496 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
...+...|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-------~~~ 88 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------SVK 88 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------TCC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------cCC
Confidence 4456778999999999999999999999999999999999999999999999999999999999887643 235
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEE
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 289 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vV 289 (533)
++++||++|+++|+.|+.+.++++....++++..+.|+.........+. +++|+|+||++|.+.+.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 6789999999999999999999998888899999999988766655554 589999999999999998888889999999
Q ss_pred EeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh-hH
Q 009496 290 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 367 (533)
Q Consensus 290 vDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~ 367 (533)
+||||++.+.++...+..++..+ +..+++++|||+++.+..+...++..+..+...........+.+.+....... +.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999999999999999998888 56789999999999998888888888888877666555555555555544443 44
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 009496 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+.+++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 248 ~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 324 (394)
T 1fuu_A 248 ECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHH-HcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCC
Confidence 4455555432 34689999999999999999998 67899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHh
Q 009496 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 514 (533)
Q Consensus 448 i~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 514 (533)
+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+......+|..+.+
T Consensus 325 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 325 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999988888888776544
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-53 Score=442.56 Aligned_cols=367 Identities=28% Similarity=0.490 Sum_probs=314.5
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCC
Q 009496 131 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQ 208 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 208 (533)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.++.+ ++++++||||+|||++|++|++..+.. ..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------~~ 93 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------AN 93 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------TS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-------cC
Confidence 356788999999999999999999999999999999999987 999999999999999999999987643 23
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-CCCCCCCee
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIR 286 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~i~ 286 (533)
.++++||++||++|+.|+.+.++++.... +..+....++....... ..+.+|+|+||++|.+++.+ ....+.+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 46689999999999999999999998764 46777777776543321 24579999999999999866 556778999
Q ss_pred EEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc-
Q 009496 287 MFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES- 363 (533)
Q Consensus 287 ~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~- 363 (533)
+||+||||++.+ .++...+..+...+ +..+++++|||++..+..+...++.++..+...........+.+.+.....
T Consensus 171 ~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 171 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH
T ss_pred EEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh
Confidence 999999999987 67888888888777 467999999999999999999999988888777766666677777766654
Q ss_pred hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 009496 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
..+...+.+++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELS-KEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 34556666666543 24689999999999999999998 7799999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCC------CCHhHHHHhhcccCCCCCccEEEEEecCcC-HHHHHHHHHHHHhcCCCCCH
Q 009496 444 RGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILKSSGAGIPR 510 (533)
Q Consensus 444 ~Gldi~~v~~VI~~~~p------~s~~~y~qriGR~gR~g~~g~~~~l~~~~~-~~~~~~l~~~l~~~~~~~p~ 510 (533)
+|+|+|++++||+||+| .+...|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+......++.
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999999999 578999999999999999999999998764 77888888888777666654
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.9e-54 Score=463.19 Aligned_cols=358 Identities=24% Similarity=0.433 Sum_probs=299.7
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~--~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++.+++.|...||..|+|+|.++++.++ .++++++.||||+|||++|++|++..+...+. ....++++|||+||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---DSQYMVKAVIVAPT 104 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---SSTTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc---cccCCCeEEEEcch
Confidence 99999999999999999999999999999 78899999999999999999999998876432 12346789999999
Q ss_pred HHHHHHHHHHHHHHhc----CCCCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcC-CCCCCCeeEEEEecc
Q 009496 220 RELCIQVEEQAKLLGK----GLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEV 293 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~-~~~l~~i~~vVvDEa 293 (533)
++|+.|+.+.++++.. .....+..++||.....+...+.. +++|+|+||++|.+++.+. ...+..+++||+|||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEECh
Confidence 9999999999998753 234678889999988888777754 7999999999999988764 345788999999999
Q ss_pred chhhhcchHHHHHHHHHhC--------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCC----CCCCccceEEEEEe
Q 009496 294 DCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP----NMPNKAVKQLAIWV 361 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~ 361 (533)
|++++++|...+..++..+ +..|+++||||+++.+..++..++..+..+..... ......+.+.....
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 9999999999999888776 26799999999999999999988887655544321 22334455555554
Q ss_pred cch-hhHHHHHHHHHh---ccCCCCCEEEEEcCcccHHHHHHHHHhhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009496 362 ESN-KKKQKLFDILMS---KQHFTPPAVVYVGSRLGADLLSNAISVTT--GMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 362 ~~~-~k~~~l~~~l~~---~~~~~~~~lIF~~s~~~~~~l~~~l~~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~V 435 (533)
... .+...+++.+.. ....+.++||||+++..++.++..|.... ++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 432 223233332222 12345689999999999999999998332 889999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009496 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 502 (533)
||||+++++|||+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++.+..++..+.+...
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999988888877653
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.7e-53 Score=435.94 Aligned_cols=356 Identities=27% Similarity=0.505 Sum_probs=306.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCC
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 210 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 210 (533)
...+|+++++++.+.+.|...||..|+|+|.++++.++.+ ++++++||||+|||++|++|++.++.. ...+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------~~~~ 75 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-------EDAS 75 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------TCCS
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-------CCCC
Confidence 4578999999999999999999999999999999999988 999999999999999999999887643 2356
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEE
Q 009496 211 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVv 290 (533)
+++||++||++|+.|+.+.++++....++.+....++...... ..+++|+|+||++|.+.+.+....+.++++||+
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 7899999999999999999999988878888887776543321 236899999999999999988888999999999
Q ss_pred eccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecch-hhH
Q 009496 291 DEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-KKK 367 (533)
Q Consensus 291 DEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~ 367 (533)
||||++.+ .++...+..+...+ +..+++++|||+++.+..+...+..++..+...........+.+.+...... .+.
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHH
T ss_pred EChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHH
Confidence 99999988 67888888888877 5689999999999999999999988888777766666666677776666444 344
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 009496 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 447 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gld 447 (533)
..+..++... ..+++||||+++..++.+++.|+ ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 232 ~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 232 DVLTELYGLM--TIGSSIIFVATKKTANVLYGKLK-SEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 4454554332 35689999999999999999998 77999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC------CHhHHHHhhcccCCCCCccEEEEEecCc-CHHHHHHHHHHHH
Q 009496 448 LLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILK 502 (533)
Q Consensus 448 i~~v~~VI~~~~p~------s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~ 502 (533)
+|++++||+||+|. |...|+||+||+||.|+.|.+++|+++. +...+..+.+.+.
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999998 9999999999999999999999999875 4455566555554
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.7e-53 Score=459.32 Aligned_cols=358 Identities=24% Similarity=0.433 Sum_probs=297.8
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~--~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++.+++.|...||..|+|+|.++++.++ .+++++++||||||||++|++|++.++...+.. ...++++|||+||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~lil~Pt 155 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKAVIVAPT 155 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc---ccCCeeEEEEcCc
Confidence 99999999999999999999999999999 678999999999999999999999998764321 1345689999999
Q ss_pred HHHHHHHHHHHHHHhcC----CCCeEEEEEcCCchHHHHHHHH-cCCceeecChHHHHHHHHcC-CCCCCCeeEEEEecc
Q 009496 220 RELCIQVEEQAKLLGKG----LPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEV 293 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~-~~~l~~i~~vVvDEa 293 (533)
++|+.|+.+.++++... ....+..+.||.....+...+. .+++|+|+||++|.+++.+. ...+..+++||+|||
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 99999999999987532 2366888899988888777664 47999999999999988764 335788999999999
Q ss_pred chhhhcchHHHHHHHHHhC--------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCC----CCCCccceEEEEEe
Q 009496 294 DCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP----NMPNKAVKQLAIWV 361 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~ 361 (533)
|++++++|...+..++..+ +..|+++||||+++.+..++..++.++..+..... ......+.+.....
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 9999999999999888775 26789999999999999999888877655443221 22234455555544
Q ss_pred cch-hhHHHHHHHHHh---ccCCCCCEEEEEcCcccHHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009496 362 ESN-KKKQKLFDILMS---KQHFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 362 ~~~-~k~~~l~~~l~~---~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~V 435 (533)
... .+...++..+.. ....+.++||||+++..++.++..|... .++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 432 222223322222 1234668999999999999999999833 2889999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009496 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 502 (533)
||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+..+++.+.+...
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999988888877654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=458.48 Aligned_cols=375 Identities=28% Similarity=0.492 Sum_probs=178.2
Q ss_pred ceEecCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHH
Q 009496 123 INVKGDAVPAP---ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 123 i~~~~~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
+.+.+...+.| ..+|++++|++.+++.|...||..|+|+|.++++.++.+ ++++++||||||||++|++|++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34445444444 678999999999999999999999999999999999987 9999999999999999999998765
Q ss_pred HhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHH
Q 009496 198 ANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM 276 (533)
Q Consensus 198 ~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~ 276 (533)
.. ...++++|||+||++|+.|+.+.++++.... ++.+....++...... ...+.+|+|+||++|.+++.
T Consensus 157 ~~-------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 157 EP-------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp CT-------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred hh-------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHH
Confidence 43 2345689999999999999999999988754 4667777776554331 12357899999999999996
Q ss_pred c-CCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCcc
Q 009496 277 K-HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKA 353 (533)
Q Consensus 277 ~-~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 353 (533)
+ ..+.+.++++||+||||++.+ .++...+..+...+ +..|++++|||++..+..++..++.++..+...........
T Consensus 227 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 306 (479)
T ss_dssp TSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------
T ss_pred hcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCC
Confidence 6 456778999999999999987 57888888887776 56899999999999999999999999988888776666666
Q ss_pred ceEEEEEecc-hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 009496 354 VKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 354 i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~ 432 (533)
+.+.+..+.. ..+...+..++... ...++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~-~~~~~v~~lh~~~~~~~R~~~~~~f~~g~ 383 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELS-KEGHQVALLSGEMMVEQRAAVIERFREGK 383 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHH-hCCccEEEecCCCCHHHHHHHHHHHHcCC
Confidence 6666665554 34445555555432 34689999999999999999998 67899999999999999999999999999
Q ss_pred CcEEEEeccccccCCCCCccEEEEcCCC------CCHhHHHHhhcccCCCCCccEEEEEecCcC-HHHHHHHHHHHHhcC
Q 009496 433 VPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILKSSG 505 (533)
Q Consensus 433 ~~VLvaT~~~~~Gldi~~v~~VI~~~~p------~s~~~y~qriGR~gR~g~~g~~~~l~~~~~-~~~~~~l~~~l~~~~ 505 (533)
.+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.|++|+++.+ ..+++.+.+.+....
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~ 463 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 463 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999 467899999999999999999999998764 777788877777666
Q ss_pred CCCCH
Q 009496 506 AGIPR 510 (533)
Q Consensus 506 ~~~p~ 510 (533)
..++.
T Consensus 464 ~~l~~ 468 (479)
T 3fmp_B 464 ERLDT 468 (479)
T ss_dssp -----
T ss_pred eECCC
Confidence 65553
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-51 Score=412.36 Aligned_cols=335 Identities=30% Similarity=0.500 Sum_probs=287.1
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009496 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
|++.+.+.|+..||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------cCCEEEEeCCHH
Confidence 5789999999999999999999999999999999999999999999999998752 456999999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch
Q 009496 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF 301 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~ 301 (533)
|+.|+.+.++++....+.++..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.++++
T Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc
Confidence 9999999999998888889999999988777666654 489999999999999988777889999999999999999999
Q ss_pred HHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCC
Q 009496 302 RDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHF 380 (533)
Q Consensus 302 ~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 380 (533)
...+..++..++ ..+++++|||++.........++.++..+... .....+.+.+..+....+ .....+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~ 219 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRE--NK 219 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHT--CC
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHHHHh--CC
Confidence 999999988884 56778899999999988888888877666432 233344555544443322 22344433 44
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP 460 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p 460 (533)
+.++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 6789999999999999998886 57889999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHh
Q 009496 461 NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 461 ~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
.|...|+||+||+||.|+.|.|++|+. .+...++.+.+.++.
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999999 888888888776643
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.1e-50 Score=430.11 Aligned_cols=338 Identities=18% Similarity=0.281 Sum_probs=273.4
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEE
Q 009496 138 SSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 138 ~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
.++++++.+.+.|+. .||..|+|+|.++|+.++.|+++++.+|||+|||++|++|++. ..+++|||
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------------~~g~~lVi 90 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------------SDGFTLVI 90 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------------SSSEEEEE
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------------cCCcEEEE
Confidence 347889999999998 5999999999999999999999999999999999999999973 24589999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---H---HcCCceeecChHHHH------HHHHcCCCCCCC
Q 009496 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---I---QQGVELIVGTPGRLI------DLLMKHDIELDD 284 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~~Iiv~Tp~~l~------~~l~~~~~~l~~ 284 (533)
+|+++|+.|+.+.++.+ ++.+..+.|+......... + ..+.+|+|+||++|. +.+.. ...+.+
T Consensus 91 sP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp CSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred eCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 99999999999999887 6778888888766544322 2 346899999999874 22222 334678
Q ss_pred eeEEEEeccchhhhcc--hHHHHHH---HHHhCCCCcEEEecccCcHHHHHHHHhhcCC--eEEEEeCCCCCCCccceEE
Q 009496 285 IRMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQL 357 (533)
Q Consensus 285 i~~vVvDEah~~~~~~--~~~~i~~---i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~ 357 (533)
+++|||||||++.++| |++.+.. +...++..++++||||+++.+...+..++.. +..+... ...+++...
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~ 242 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYE 242 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEE
Confidence 9999999999999987 7766654 4455688999999999999887766655542 3333221 122233322
Q ss_pred EEEec--chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009496 358 AIWVE--SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 358 ~~~~~--~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~V 435 (533)
+.... ...+...+.+++... ..+.++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++|+++|
T Consensus 243 v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~-~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~V 320 (591)
T 2v1x_A 243 VRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQ-NLGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320 (591)
T ss_dssp EEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred EEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHH-HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 22222 123445566666432 245689999999999999999998 78999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHH
Q 009496 436 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 498 (533)
||||+++++|||+|++++||+|++|.|++.|+||+||+||.|.+|.|++|+++.|...+..++
T Consensus 321 lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776665554
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.3e-52 Score=439.02 Aligned_cols=388 Identities=23% Similarity=0.410 Sum_probs=261.7
Q ss_pred CHHHHHHHHhhcCceEe-cCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchh
Q 009496 110 TIGQTDSLRKRLEINVK-GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKT 186 (533)
Q Consensus 110 ~~~~~~~~~~~~~i~~~-~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT 186 (533)
+.+++..+.+...+... ....|.++..|...++++.+.+.+...||..|+++|.++++.++.+ +++++.||||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT 172 (508)
T 3fho_A 93 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKT 172 (508)
T ss_dssp ----------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHH
Confidence 34455555544444332 3344566777888889999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeec
Q 009496 187 ASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVG 266 (533)
Q Consensus 187 ~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~ 266 (533)
++|++|++..+.. ...++++||++|+++|+.|+.+.+++++...+.......++..... ...+++|+|+
T Consensus 173 ~~~~~~il~~l~~-------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~ 241 (508)
T 3fho_A 173 AAFALTMLSRVDA-------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIG 241 (508)
T ss_dssp HHHHHHHHHHSCT-------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEE
T ss_pred HHHHHHHHHHHHh-------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEE
Confidence 9999999987643 2346689999999999999999999998777776666665543322 2346899999
Q ss_pred ChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEe
Q 009496 267 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 267 Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 344 (533)
||++|.+.+.+....+.++++||+||||++.+ .++...+..+...+ +..+++++|||+++.+..+...+..++..+..
T Consensus 242 T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~ 321 (508)
T 3fho_A 242 TPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRL 321 (508)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECC
T ss_pred CHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEe
Confidence 99999999998888899999999999999987 67888888888887 47899999999999999999999988888777
Q ss_pred CCCCCCCccceEEEEEec-chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHH
Q 009496 345 GKPNMPNKAVKQLAIWVE-SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 345 ~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~ 423 (533)
.........+.+.+.... ...+...+..++... ..+++||||+++..|+.++..|. ..+..+..+||++++.+|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~-~~~~~v~~~hg~~~~~~R~~ 398 (508)
T 3fho_A 322 KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMT-ADGHTVACLTGNLEGAQRDA 398 (508)
T ss_dssp CCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHT-TTTCCCCEEC-----CTTGG
T ss_pred ccccCCcccceEEEEECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHH
Confidence 666655556666665553 344555565655443 35689999999999999999998 68899999999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCC------CCHhHHHHhhcccCCCCCccEEEEEecC-cCHHHHHH
Q 009496 424 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNE-ENKNLFQE 496 (533)
Q Consensus 424 ~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p------~s~~~y~qriGR~gR~g~~g~~~~l~~~-~~~~~~~~ 496 (533)
+++.|++|+.+|||||+++++|+|+|++++||++++| .|+..|+||+||+||.|+.|.+++|+++ .+...+..
T Consensus 399 il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~ 478 (508)
T 3fho_A 399 IMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNA 478 (508)
T ss_dssp GTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHH
T ss_pred HHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHH
Confidence 9999999999999999999999999999999999999 8899999999999999999999999984 56777888
Q ss_pred HHHHHHhcCCCCCHH
Q 009496 497 LVDILKSSGAGIPRE 511 (533)
Q Consensus 497 l~~~l~~~~~~~p~~ 511 (533)
+.+.+......+|..
T Consensus 479 i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 479 IQEYFQRPITRVPTD 493 (508)
T ss_dssp HHHHSCCCCC-----
T ss_pred HHHHHCCCcccCCCc
Confidence 888887777777743
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.2e-49 Score=423.05 Aligned_cols=341 Identities=20% Similarity=0.322 Sum_probs=277.1
Q ss_pred ccCcccCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009496 134 ILSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
+.+|+++++++.+.+.|++ .||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. .+.
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------------~g~ 67 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------------NGL 67 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-------------SSE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-------------CCC
Confidence 3579999999999999998 69999999999999999999999999999999999999998732 356
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHH---HHH-HcCCceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV---YRI-QQGVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
+||++|+++|+.|+.+.++.+ ++....+.++....... ..+ ....+|+++||++|........+...++++|
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred EEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 999999999999999888875 56777777776654432 222 2458999999999953222222334789999
Q ss_pred EEeccchhhhcc--hHHHHHH---HHHhCCCCcEEEecccCcHHHHH-HHHhhc-CCeEEEEeCCCCCCCccceEEEEEe
Q 009496 289 VLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEK-MSSSIS-KDIVVVSVGKPNMPNKAVKQLAIWV 361 (533)
Q Consensus 289 VvDEah~~~~~~--~~~~i~~---i~~~~~~~q~i~~SAT~~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~i~~~~~~~ 361 (533)
|+||||++.++| |++.+.. +...++..+++++|||++..+.. +...+. .++..+. .... .+++. +...
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~--r~~l~--~~v~ 218 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD--RPNIR--YMLM 218 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCC--CTTEE--EEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCC--CCceE--EEEE
Confidence 999999999887 6665543 45666889999999999987654 333332 3443332 2222 22232 2233
Q ss_pred cchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 009496 362 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 441 (533)
Q Consensus 362 ~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~ 441 (533)
....+...+.+++... .+.++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 219 ~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a 295 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQ-SKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 (523)
T ss_dssp ECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred eCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHH-HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 4455667788877654 45689999999999999999998 77999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009496 442 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
+++|||+|++++||+|++|.|++.|+||+||+||.|.+|.|++|+++.+...++.++.
T Consensus 296 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888777666654
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.8e-49 Score=408.55 Aligned_cols=325 Identities=19% Similarity=0.273 Sum_probs=265.0
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHH
Q 009496 145 KLLQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 145 ~l~~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
.+.+.+++. || .|+|+|.++++.++.|++++++||||||||++|++|++..+ ..++++||++||++|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~----------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH----------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh----------cCCCEEEEEECCHHHH
Confidence 344555554 66 89999999999999999999999999999999998887654 2467899999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCch---HHHHHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-
Q 009496 224 IQVEEQAKLLGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ- 298 (533)
Q Consensus 224 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~- 298 (533)
.|+.+.+++++. .++++..++||... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.+
T Consensus 78 ~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 78 KQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 999999999987 78899999999887 5566777776 99999999999888775 5567899999999987654
Q ss_pred ----------cchHHH-HHHHHHhC------------CCCcEEEeccc-CcHHHH-HHHHhhcCCeEEEEeCCCCCCCcc
Q 009496 299 ----------RGFRDQ-VMQIFRAI------------SLPQILMYSAT-ISQEVE-KMSSSISKDIVVVSVGKPNMPNKA 353 (533)
Q Consensus 299 ----------~~~~~~-i~~i~~~~------------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 353 (533)
++|... +..++..+ +..|++++||| +|..+. .+...+.. +.+.........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 667777 67777765 67899999999 565443 23333222 223333344455
Q ss_pred ceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEE-EEcCCCCHHHHHHHHHHHhcCC
Q 009496 354 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SIHGEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 354 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~-~ih~~~~~~~r~~~~~~f~~g~ 432 (533)
+.+.+... .+...+.+++... ++++||||+++..|+.++..|. ..++.+. .+||+ +|. ++.|++|+
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~h~~----~r~--~~~f~~g~ 297 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLK-RFKFNVGETWSEF----EKN--FEDFKVGK 297 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHH-HTTCCEEESSSCH----HHH--HHHHHTTS
T ss_pred chheeecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHH-HcCCceehhhcCc----chH--HHHHhCCC
Confidence 55555444 4556677777662 3689999999999999999998 7799998 89985 444 99999999
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEcCCC--CCHhHHHHhhcccCCCC----CccEEEEEecCcCHHHHHHHHHHH
Q 009496 433 VPVIVA----TGILGRGVELLG-VRQVIIFDMP--NSIKEYVHQIGRASQMG----DEGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 433 ~~VLva----T~~~~~Gldi~~-v~~VI~~~~p--~s~~~y~qriGR~gR~g----~~g~~~~l~~~~~~~~~~~l~~~l 501 (533)
++|||| |+++++|+|+|+ +++||+||+| .+...|+||+||+||.| ..|.+++|+ .+...+..+.+.+
T Consensus 298 ~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 298 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 999999 999999999999 9999999999 99999999999999988 479999999 6777888888888
Q ss_pred H
Q 009496 502 K 502 (533)
Q Consensus 502 ~ 502 (533)
.
T Consensus 376 ~ 376 (414)
T 3oiy_A 376 L 376 (414)
T ss_dssp H
T ss_pred c
Confidence 7
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-46 Score=415.08 Aligned_cols=339 Identities=24% Similarity=0.248 Sum_probs=267.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCc
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 211 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 211 (533)
...+|+++++++.+.+.+...||..|+|+|.++++. +.++++++++||||||||++|.++++..+.. .+.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~ 76 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------NGG 76 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SCS
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------CCC
Confidence 346799999999999999999999999999999999 7799999999999999999999999988763 257
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEe
Q 009496 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvD 291 (533)
+++|++|+++|+.|+.+.++++.. .+.++....|+...... ...+++|+|+||++|..++.+....++++++||+|
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 899999999999999988865543 47788888887654432 12368999999999999998877668999999999
Q ss_pred ccchhhhcchHHHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccc---------eEEEEEec
Q 009496 292 EVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAV---------KQLAIWVE 362 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i---------~~~~~~~~ 362 (533)
|+|++.+.+++..+..++.+++..++|++|||+++ ...+...+....+ .......+.... .....+.+
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAKRRNLLALSATISN-YKQIAKWLGAEPV--ATNWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT-HHHHHHHHTCEEE--ECCCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred chhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC-HHHHHHHhCCCcc--CCCCCCCCceEEEEecCCcccceeeecCc
Confidence 99999888889999999988889999999999975 3555555443221 111111111000 00111111
Q ss_pred --------chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcC----------------------------
Q 009496 363 --------SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG---------------------------- 406 (533)
Q Consensus 363 --------~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~---------------------------- 406 (533)
.......+.+.+ ..++++||||+++.+++.++..|.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred chhhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 122333333333 3467999999999999999999874321
Q ss_pred -------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cC-------CCCCHhHHHH
Q 009496 407 -------MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-------MPNSIKEYVH 468 (533)
Q Consensus 407 -------~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~-------~p~s~~~y~q 468 (533)
..+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|.|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 24889999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred hhcccCCCCC--ccEEEEEecCcCH
Q 009496 469 QIGRASQMGD--EGTAIVFVNEENK 491 (533)
Q Consensus 469 riGR~gR~g~--~g~~~~l~~~~~~ 491 (533)
|+|||||.|. .|.|++++++.+.
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999999884 7999999987653
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.1e-47 Score=408.01 Aligned_cols=357 Identities=18% Similarity=0.236 Sum_probs=272.2
Q ss_pred cCcCCCHHHHHHHHhhcCceEe-cCCCCCcccCcccCCCCHHHHHHH--------HHcCCCCCCHHHHHHHHHHhCCCcE
Q 009496 105 GFQSLTIGQTDSLRKRLEINVK-GDAVPAPILSFSSCSLSQKLLQNI--------EAAGYDMPTPVQMQAIPSALSGKSL 175 (533)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~f~~~~l~~~l~~~l--------~~~g~~~p~~~Q~~~i~~i~~g~~v 175 (533)
.++.++.+++......+...+. |.. +.+.+.+.+ +..|| .|+|+|..++|.++.|+
T Consensus 35 ~~~~lsd~el~~~t~~~~~~~~~g~~------------ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~-- 99 (844)
T 1tf5_A 35 DYENLSDDALKHKTIEFKERLEKGAT------------TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN-- 99 (844)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--
Confidence 3778898888665554433222 221 222233332 25799 99999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHH
Q 009496 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 255 (533)
Q Consensus 176 li~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 255 (533)
++.|+||+|||++|.+|++.+.+. ++.++||+||++||.|+.+++..+...+++++.+++||.+... .
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL~----------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~--r 167 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNALT----------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDE--K 167 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHH--H
T ss_pred EEEccCCcHHHHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH--H
Confidence 999999999999999999855432 4579999999999999999999999999999999999987654 3
Q ss_pred HHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhh-hcc---------------hHHHHHHHHHhC
Q 009496 256 RIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-QRG---------------FRDQVMQIFRAI 312 (533)
Q Consensus 256 ~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~-~~~---------------~~~~i~~i~~~~ 312 (533)
....+++|+|+||++| .+++..+ .+.+..+.++|+||||+|+ +++ |...+..++..+
T Consensus 168 ~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l 247 (844)
T 1tf5_A 168 REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTL 247 (844)
T ss_dssp HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTC
T ss_pred HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhC
Confidence 3345699999999999 7777643 3567899999999999998 663 778899999988
Q ss_pred C----------CCcEE-----------------EecccCcH---HHHHHH--HhhcC---CeEEE-----EeCC------
Q 009496 313 S----------LPQIL-----------------MYSATISQ---EVEKMS--SSISK---DIVVV-----SVGK------ 346 (533)
Q Consensus 313 ~----------~~q~i-----------------~~SAT~~~---~~~~~~--~~~~~---~~~~i-----~~~~------ 346 (533)
+ .+|++ +||||++. .+.... ..++. +++.. .+..
T Consensus 248 ~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m 327 (844)
T 1tf5_A 248 KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM 327 (844)
T ss_dssp CSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBC
T ss_pred cccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccccc
Confidence 5 46776 89999874 333322 22221 22210 0000
Q ss_pred ---------------------------------------------------------------------CCCCCccce-E
Q 009496 347 ---------------------------------------------------------------------PNMPNKAVK-Q 356 (533)
Q Consensus 347 ---------------------------------------------------------------------~~~~~~~i~-~ 356 (533)
.+.+..... +
T Consensus 328 ~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~ 407 (844)
T 1tf5_A 328 KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRP 407 (844)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECC
T ss_pred CCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCC
Confidence 000000000 1
Q ss_pred EEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009496 357 LAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVI 436 (533)
Q Consensus 357 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VL 436 (533)
.+.+.....|...+.+.+......+.++||||+|++.++.|+..|. ..|+++..+||++.+.+|..+.+.|+.| .|+
T Consensus 408 d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~-~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~Vl 484 (844)
T 1tf5_A 408 DLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLK-NKGIPHQVLNAKNHEREAQIIEEAGQKG--AVT 484 (844)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHH-TTTCCCEEECSSCHHHHHHHHTTTTSTT--CEE
T ss_pred cEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCCEEEeeCCccHHHHHHHHHcCCCC--eEE
Confidence 1344556677788888776543345689999999999999999998 8899999999999888887666666555 699
Q ss_pred EEeccccccCCCC--------CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 437 VATGILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 437 vaT~~~~~Gldi~--------~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|||++++||+||+ ++.+||+|+.|.|...|+||+||+||+|.+|.+++|++.+|.
T Consensus 485 IATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 485 IATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999 788999999999999999999999999999999999987763
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.2e-46 Score=400.27 Aligned_cols=331 Identities=16% Similarity=0.253 Sum_probs=205.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+..+|+|+|.++++.++.|+++++++|||||||++|++|++..+...+ ...++++||++||++|+.||.+.++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999998876521 123678999999999999999999999
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcchHHHHH-HHHHh
Q 009496 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQVM-QIFRA 311 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~i~~vVvDEah~~~~~~~~~~i~-~i~~~ 311 (533)
....++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++.++++...+. ..+..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88778899999999877766666777799999999999999988777 78999999999999998877544332 22222
Q ss_pred -----CCCCcEEEecccCcH-----------HHHHHHHhhcCCeEEEEeCCC-----CCCCccceEEEE-----------
Q 009496 312 -----ISLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLAI----------- 359 (533)
Q Consensus 312 -----~~~~q~i~~SAT~~~-----------~~~~~~~~~~~~~~~i~~~~~-----~~~~~~i~~~~~----------- 359 (533)
.+.+++++||||++. .+..+...+....+....... ....+.......
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 245899999999942 222222222211111100000 000000000000
Q ss_pred ------------------------------------Ee------------------------------------------
Q 009496 360 ------------------------------------WV------------------------------------------ 361 (533)
Q Consensus 360 ------------------------------------~~------------------------------------------ 361 (533)
|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred --------------------------------------------------cchhhHHHHHHHHHhcc--CCCCCEEEEEc
Q 009496 362 --------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVG 389 (533)
Q Consensus 362 --------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~lIF~~ 389 (533)
....|...|.+++.... ..+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 01335555666665432 45679999999
Q ss_pred CcccHHHHHHHHHhh-----------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCccEEEEc
Q 009496 390 SRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIF 457 (533)
Q Consensus 390 s~~~~~~l~~~l~~~-----------~~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~ 457 (533)
++..++.++..|... .|.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999733 25556677889999999999999999 999999999999999999999999999
Q ss_pred CCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 458 DMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 458 ~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|+|+|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999 998 88999999988654
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-46 Score=416.51 Aligned_cols=333 Identities=19% Similarity=0.274 Sum_probs=268.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009496 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
+|+++++++.+.+.+...||..|+|+|.++++. +.++++++++||||||||++|.+|++..+.. .+.++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---------QGGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------HCSEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCCEEE
Confidence 588999999999999999999999999999998 7899999999999999999999999988763 257899
Q ss_pred EEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 009496 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah 294 (533)
|++|+++|+.|+.+.++++.. .++++..+.|+...... ...+++|+|+||++|..++.+....++++++||+||+|
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 999999999999998876544 47888888887554332 12468999999999999998877668999999999999
Q ss_pred hhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEE------EEec-----
Q 009496 295 CMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA------IWVE----- 362 (533)
Q Consensus 295 ~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~------~~~~----- 362 (533)
++.+++++..+..++.+++ ..++|++|||+++ ...+...+.... +.......+ +...+ .+..
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~rp~~---l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSDWRPVK---LRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECCCCSSE---EEEEEEETTEEEETTSCEEE
T ss_pred ccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCCCCCCc---ceEEEEeCCeeeccccchhh
Confidence 9998888999999988885 7899999999985 345555443222 111111111 11111 1111
Q ss_pred chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc--------------------------------CCeEE
Q 009496 363 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--------------------------------GMKAL 410 (533)
Q Consensus 363 ~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~--------------------------------~~~~~ 410 (533)
...+...+.+.+ ..++++||||+++..++.++..|.... ...+.
T Consensus 223 ~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 223 FSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp CSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 122334444443 235799999999999999999986321 12488
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cC----CCCCHhHHHHhhcccCCCC--Ccc
Q 009496 411 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD----MPNSIKEYVHQIGRASQMG--DEG 480 (533)
Q Consensus 411 ~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~----~p~s~~~y~qriGR~gR~g--~~g 480 (533)
.+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|+||+|||||.| ..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 77 5899999999999999988 479
Q ss_pred EEEEEecCcCH
Q 009496 481 TAIVFVNEENK 491 (533)
Q Consensus 481 ~~~~l~~~~~~ 491 (533)
.|++++++.+.
T Consensus 379 ~~~~l~~~~~~ 389 (720)
T 2zj8_A 379 EGIIVSTSDDP 389 (720)
T ss_dssp EEEEECSSSCH
T ss_pred eEEEEecCccH
Confidence 99999998773
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-46 Score=416.20 Aligned_cols=343 Identities=16% Similarity=0.196 Sum_probs=224.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009496 147 LQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 147 ~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
...+...||..|+|+|.++++.++.|+++++++|||+|||++|++|++.++...+ ...++++||++||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----TTCCCCEEEECSSHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----cCCCCeEEEEECCHHHHHHH
Confidence 3456778999999999999999999999999999999999999999998876421 12346899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcchH-HH
Q 009496 227 EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFR-DQ 304 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~i~~vVvDEah~~~~~~~~-~~ 304 (533)
.+.+++++...++++..++||.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++.+.... ..
T Consensus 78 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 78 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 999999998778999999998876665666667899999999999999998766 7889999999999998765422 22
Q ss_pred HHHHHHh------CCCCcEEEecccCc--------HHHHHHHHhh---------------------cCCeEEEEe--CCC
Q 009496 305 VMQIFRA------ISLPQILMYSATIS--------QEVEKMSSSI---------------------SKDIVVVSV--GKP 347 (533)
Q Consensus 305 i~~i~~~------~~~~q~i~~SAT~~--------~~~~~~~~~~---------------------~~~~~~i~~--~~~ 347 (533)
+...+.. -+.+++++||||+. .....+.... ...|..... ...
T Consensus 158 ~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 158 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 2222322 15689999999996 1122222111 011110000 000
Q ss_pred CCC-----------------------------------------------------------------------------
Q 009496 348 NMP----------------------------------------------------------------------------- 350 (533)
Q Consensus 348 ~~~----------------------------------------------------------------------------- 350 (533)
...
T Consensus 238 ~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 238 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 317 (696)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 000
Q ss_pred --------------------------------CccceEEEEE-------------e---cchhhHHHHHHHHHhc--cCC
Q 009496 351 --------------------------------NKAVKQLAIW-------------V---ESNKKKQKLFDILMSK--QHF 380 (533)
Q Consensus 351 --------------------------------~~~i~~~~~~-------------~---~~~~k~~~l~~~l~~~--~~~ 380 (533)
...+.+.+.. . ....|...+.+++... ...
T Consensus 318 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 397 (696)
T 2ykg_A 318 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 397 (696)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCC
Confidence 0000000000 0 1234566666776654 234
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhcC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTTG----MKALSI--------HGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVE 447 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~~----~~~~~i--------h~~~~~~~r~~~~~~f~~-g~~~VLvaT~~~~~Gld 447 (533)
+.++||||+++..++.+++.|. ..+ +.+..+ ||+|++.+|..+++.|++ |+++|||||+++++|||
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 476 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHH-HCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC--
T ss_pred CCcEEEEeCcHHHHHHHHHHHH-hCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCc
Confidence 5789999999999999999998 555 777777 569999999999999998 99999999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHH
Q 009496 448 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 448 i~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l 497 (533)
+|++++||+||+|.|+..|+||+|| ||. +.|.+++|++..+......+
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp -CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999 998 78999999988766444433
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.7e-46 Score=412.53 Aligned_cols=335 Identities=20% Similarity=0.252 Sum_probs=263.7
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009496 136 SFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 136 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+|++++ +++.+.+.++..||..|+|+|.++++.++++++++++||||||||++|.+|++..+.. ++++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCcE
Confidence 577777 9999999999999999999999999999999999999999999999999999987653 4679
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009496 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
||++|+++|+.|+.+.++++. ..+.++..+.|+...... ...+++|+|+||++|..++.+....++++++||+||+
T Consensus 72 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred EEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 999999999999999886554 347888888887654331 1236899999999999999887666889999999999
Q ss_pred chhhhcchHHHHHHHHHhC----CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccc---eEEEEEecchh-
Q 009496 294 DCMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAV---KQLAIWVESNK- 365 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i---~~~~~~~~~~~- 365 (533)
|++.+++++..+..++.++ +..|+|++|||+++ ...+...+..+. +.......+.... .....+.....
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 148 HLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADY--YVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEE--EECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred eecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCc--ccCCCCCccceEEEeeCCeeeccCcchh
Confidence 9999888888888877766 67999999999986 455655554322 2222221111100 00011111111
Q ss_pred ------hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc-----------------------------CCeEE
Q 009496 366 ------KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----------------------------GMKAL 410 (533)
Q Consensus 366 ------k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-----------------------------~~~~~ 410 (533)
....+.+.+ ..++++||||+++.+++.++..|.... +..+.
T Consensus 225 ~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 225 TSRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 333444443 246789999999999999999886321 13577
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cC---CCCCHhHHHHhhcccCCCC--CccE
Q 009496 411 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD---MPNSIKEYVHQIGRASQMG--DEGT 481 (533)
Q Consensus 411 ~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~---~p~s~~~y~qriGR~gR~g--~~g~ 481 (533)
.+||++++++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| ..|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 8999999999999999999999999999999999999999999999 66 7899999999999999998 4799
Q ss_pred EEEEecCcCH
Q 009496 482 AIVFVNEENK 491 (533)
Q Consensus 482 ~~~l~~~~~~ 491 (533)
|++++++.+.
T Consensus 381 ~~~l~~~~~~ 390 (702)
T 2p6r_A 381 AIIIVGKRDR 390 (702)
T ss_dssp EEEECCGGGH
T ss_pred EEEEecCccH
Confidence 9999998764
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-45 Score=418.43 Aligned_cols=327 Identities=19% Similarity=0.178 Sum_probs=258.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEE
Q 009496 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
.|...++++.+...+...++..|+|+|.++++.++.|+++|++||||||||++|++|++..+. .++++||
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~----------~g~rvlv 232 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIY 232 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH----------TTCEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEE
Confidence 566677777776666666777899999999999999999999999999999999999998764 3678999
Q ss_pred EcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009496 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
++||++|+.|+++.++++.. .+..+.|+... ..+++|+|+||++|.+++.+....+.++++|||||||+
T Consensus 233 l~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred EcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 99999999999999998764 45667776553 24589999999999999998877789999999999999
Q ss_pred hhhcchHHHHHHHHHhC-CCCcEEEecccCcHH--HHHHHHhhcCCeEEEEeC-CCCCCCccceEEEE---------Eec
Q 009496 296 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQE--VEKMSSSISKDIVVVSVG-KPNMPNKAVKQLAI---------WVE 362 (533)
Q Consensus 296 ~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~i~~~-~~~~~~~~i~~~~~---------~~~ 362 (533)
+.+++++..+..++..+ +..++|+||||+|+. +..+.......+..+... ....+ +...+. .++
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p---l~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP---LQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC---EEEEEEETTSSCCEEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc---ceEEEeecCCcceeeeec
Confidence 99999999999999888 568999999999764 456666665554433322 22211 111111 010
Q ss_pred c----------------------------------------------hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHH
Q 009496 363 S----------------------------------------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 363 ~----------------------------------------------~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~ 396 (533)
. ..+...++..+.. ....++||||+++..|+.
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHH
Confidence 0 1122223333332 234689999999999999
Q ss_pred HHHHHHhhcCCe---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009496 397 LSNAISVTTGMK---------------------------------------ALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 397 l~~~l~~~~~~~---------------------------------------~~~ih~~~~~~~r~~~~~~f~~g~~~VLv 437 (533)
++..|. ..++. +..+||+|++.+|..+++.|++|.++|||
T Consensus 457 la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLV 535 (1108)
T 3l9o_A 457 LALKMS-KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535 (1108)
T ss_dssp HHHHTC-SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHH-hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 999886 22221 78999999999999999999999999999
Q ss_pred EeccccccCCCCCccEEEEcCC--------CCCHhHHHHhhcccCCCC--CccEEEEEecCc
Q 009496 438 ATGILGRGVELLGVRQVIIFDM--------PNSIKEYVHQIGRASQMG--DEGTAIVFVNEE 489 (533)
Q Consensus 438 aT~~~~~Gldi~~v~~VI~~~~--------p~s~~~y~qriGR~gR~g--~~g~~~~l~~~~ 489 (533)
||+++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|++++++.
T Consensus 536 AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 536 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999998775 447888999999999999 689999999876
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.4e-45 Score=396.64 Aligned_cols=334 Identities=15% Similarity=0.234 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
+|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+ ...++++||++||++|+.|+.+.++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999998876521 123678999999999999999999999988
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcch-HHHHHHHHHhC--
Q 009496 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI-- 312 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~i~~vVvDEah~~~~~~~-~~~i~~i~~~~-- 312 (533)
.++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++||+||||++.+.+. ...+...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 88999999999877766666677799999999999999988776 788999999999999987753 33333333332
Q ss_pred ----CCCcEEEecccCcH-----------HHHHHHHhhcCCeEEEEeCC-----CCCCCccceEEEEE------------
Q 009496 313 ----SLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGK-----PNMPNKAVKQLAIW------------ 360 (533)
Q Consensus 313 ----~~~q~i~~SAT~~~-----------~~~~~~~~~~~~~~~i~~~~-----~~~~~~~i~~~~~~------------ 360 (533)
+.++++++|||++. .+..+...+....+...... ..............
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 55799999999953 22222222221121111000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009496 361 -------------------------------------------------------------------------------- 360 (533)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (533)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ------------------------------------------------ecchhhHHHHHHHHHhcc--CCCCCEEEEEcC
Q 009496 361 ------------------------------------------------VESNKKKQKLFDILMSKQ--HFTPPAVVYVGS 390 (533)
Q Consensus 361 ------------------------------------------------~~~~~k~~~l~~~l~~~~--~~~~~~lIF~~s 390 (533)
.....|...+.+++.... ..+.++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 001334555556655432 345799999999
Q ss_pred cccHHHHHHHHHhhc-----------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCccEEEEcC
Q 009496 391 RLGADLLSNAISVTT-----------GMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIFD 458 (533)
Q Consensus 391 ~~~~~~l~~~l~~~~-----------~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~ 458 (533)
+..++.++..|.... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998321 3455566779999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHH
Q 009496 459 MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 459 ~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l 497 (533)
+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 998 89999999998766544433
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-44 Score=404.56 Aligned_cols=333 Identities=15% Similarity=0.248 Sum_probs=212.6
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+..|+|+|.++++.++.|+++++++|||||||++|++|++..+...+ ...++++|||+||++|+.|+.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999998876521 1236789999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcchHHHH-HHHH
Q 009496 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQV-MQIF 309 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~i~~vVvDEah~~~~~~~~~~i-~~i~ 309 (533)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++.+.+....+ ...+
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 9988778899999999877776677778899999999999999988776 7889999999999999876543333 2333
Q ss_pred Hh-----CCCCcEEEecccCc-----------HHHHHHHHhhcCCeEEEEeCCC-----CCCCccceEEEE---------
Q 009496 310 RA-----ISLPQILMYSATIS-----------QEVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLAI--------- 359 (533)
Q Consensus 310 ~~-----~~~~q~i~~SAT~~-----------~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~i~~~~~--------- 359 (533)
.. .+.++++++|||++ ..+..+...+....+....... ............
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 32 35589999999995 2233333222211111100000 000000000000
Q ss_pred --------------------------------------Ee----------------------------------------
Q 009496 360 --------------------------------------WV---------------------------------------- 361 (533)
Q Consensus 360 --------------------------------------~~---------------------------------------- 361 (533)
|+
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ----------------------------------------------------cchhhHHHHHHHHHhc--cCCCCCEEEE
Q 009496 362 ----------------------------------------------------ESNKKKQKLFDILMSK--QHFTPPAVVY 387 (533)
Q Consensus 362 ----------------------------------------------------~~~~k~~~l~~~l~~~--~~~~~~~lIF 387 (533)
....|...|.+++... ...+.++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0123445555565542 2446799999
Q ss_pred EcCcccHHHHHHHHHhh-----------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCccEEE
Q 009496 388 VGSRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 388 ~~s~~~~~~l~~~l~~~-----------~~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
|+++..++.++..|... .|.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999732 35666778999999999999999999 9999999999999999999999999
Q ss_pred EcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 456 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 456 ~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
+||+|+|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999 999 89999999987654
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.6e-44 Score=409.00 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=259.2
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|| +|+|+|.++++.++.|+|++++||||||||++|+++++..+ ..++++||++||++|+.|+.+.++.
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~----------~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------RKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH----------TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH----------hcCCeEEEEechHHHHHHHHHHHHH
Confidence 578 69999999999999999999999999999998888777655 2467899999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCch---HHHHHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh----------h
Q 009496 233 LGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML----------Q 298 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~----------~ 298 (533)
++ ..++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++. +
T Consensus 144 l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 144 LA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp TS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred hh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 87 678899999999887 6677778776 99999999999888775 567789999999997644 4
Q ss_pred -cchHHH-HHHHHHhC------------CCCcEEEeccc-CcHHHH-HHHHhhcCCeEEEEeCCCCCCCccceEEEEEec
Q 009496 299 -RGFRDQ-VMQIFRAI------------SLPQILMYSAT-ISQEVE-KMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE 362 (533)
Q Consensus 299 -~~~~~~-i~~i~~~~------------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 362 (533)
+||... +..++..+ ...|+++|||| .|..+. .+....+. +.+........++.+.+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC-
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec-
Confidence 788777 77888765 46799999999 565443 22333322 33333344455666666544
Q ss_pred chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE---
Q 009496 363 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SIHGEKPMKERREIMRSFLVGEVPVIVA--- 438 (533)
Q Consensus 363 ~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~-~ih~~~~~~~r~~~~~~f~~g~~~VLva--- 438 (533)
.+...+.+++... ++++||||+++..++.++..|. ..++.+. .+|| +|++ ++.|++|+++||||
T Consensus 296 --~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~-~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLK-RFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp --CCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHH-HTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETT
T ss_pred --CHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHH-hCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecC
Confidence 4556667777663 3789999999999999999998 7799998 9999 2555 99999999999999
Q ss_pred -eccccccCCCCC-ccEEEEcCCCC-------------------------------------------------------
Q 009496 439 -TGILGRGVELLG-VRQVIIFDMPN------------------------------------------------------- 461 (533)
Q Consensus 439 -T~~~~~Gldi~~-v~~VI~~~~p~------------------------------------------------------- 461 (533)
|+++++|||+|+ +++||+||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~ 443 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKE 443 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999 99999999998
Q ss_pred -----------------CHhHHHHhhcccCCCCCcc--EEEEEecCcCHHHHHHHHHHHHh
Q 009496 462 -----------------SIKEYVHQIGRASQMGDEG--TAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 462 -----------------s~~~y~qriGR~gR~g~~g--~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
++..|+||+|||||.|..| .++.++..+|...+..|.+.++-
T Consensus 444 ~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 444 MFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp HCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred ccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7889999999999975432 33444444788888888888873
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.2e-45 Score=413.33 Aligned_cols=323 Identities=18% Similarity=0.287 Sum_probs=259.9
Q ss_pred HHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009496 148 QNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 148 ~~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+.+.+ .||. | |+|.++|+.++.|+|++++||||||||+ |++|++..+.. .++++||++||++|+.|+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------~~~~~lil~PtreLa~Q~ 115 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------KGKRCYVIFPTSLLVIQA 115 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------TSCCEEEEESCHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------cCCeEEEEeccHHHHHHH
Confidence 44443 6999 9 9999999999999999999999999998 89999887753 467899999999999999
Q ss_pred HHHHHHHhcCCCC----eEEEEEcCCchHHH---HHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 009496 227 EEQAKLLGKGLPF----KTALVVGGDAMARQ---VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 227 ~~~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~ 299 (533)
.+.+++++...++ ++..++||.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||+|++
T Consensus 116 ~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~- 189 (1054)
T 1gku_B 116 AETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK- 189 (1054)
T ss_dssp HHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT-
T ss_pred HHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh-
Confidence 9999999988888 88999999887663 344445 99999999999987765 67899999999999998
Q ss_pred chHHHHHHHHHhC------------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhH
Q 009496 300 GFRDQVMQIFRAI------------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 367 (533)
Q Consensus 300 ~~~~~i~~i~~~~------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 367 (533)
++..+..++..+ ...|++++|||++.. ..+...+..++..+.+.........+.+.+. ...+.
T Consensus 190 -~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~ 264 (1054)
T 1gku_B 190 -ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESI 264 (1054)
T ss_dssp -STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCT
T ss_pred -ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHH
Confidence 467778887776 357899999999876 4333333333333333333334445555444 34555
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----ecccc
Q 009496 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA----TGILG 443 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLva----T~~~~ 443 (533)
..+.+++... ++++||||+++..|+.++..|. .. +.+..+||++. .+++.|++|+++|||| |++++
T Consensus 265 ~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~-~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 265 STLSSILEKL---GTGGIIYARTGEEAEEIYESLK-NK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp TTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTT-TS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------
T ss_pred HHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHh-hc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeE
Confidence 6666776543 4689999999999999999998 44 89999999984 7889999999999999 89999
Q ss_pred ccCCCCCc-cEEEEcCCC--------------------------------------------------------------
Q 009496 444 RGVELLGV-RQVIIFDMP-------------------------------------------------------------- 460 (533)
Q Consensus 444 ~Gldi~~v-~~VI~~~~p-------------------------------------------------------------- 460 (533)
+|||+|+| ++||++|+|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999995 999999999
Q ss_pred ---------CCHhHHHHhhcccCCCCCcc--EEEEEecCcCHHHHHHHHHHHHh
Q 009496 461 ---------NSIKEYVHQIGRASQMGDEG--TAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 461 ---------~s~~~y~qriGR~gR~g~~g--~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
.+...|+||+||+||.|..| .+++|+...+...+..|.+.++.
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 48888888889999999998886
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=392.68 Aligned_cols=318 Identities=19% Similarity=0.202 Sum_probs=248.9
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+|. |+|+|.++++.+..|++++++||||||||++|+++++..+. .+.++||++||++|+.|+++.+++
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHHHHH
Confidence 4664 99999999999999999999999999999999999887663 357899999999999999999988
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009496 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
+.. .+..+.|+.... .+.+|+|+||++|.+++.+....+.++++|||||||++.+++++..+..++..+
T Consensus 152 ~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 764 566667765542 357999999999999998887788999999999999999998888888888888
Q ss_pred -CCCcEEEecccCcHHH--HHHHHhhcCCeEEEEeCCCCCCCccceEEEEE---------ecc-----------------
Q 009496 313 -SLPQILMYSATISQEV--EKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW---------VES----------------- 363 (533)
Q Consensus 313 -~~~q~i~~SAT~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~---------~~~----------------- 363 (533)
+..++|++|||+++.. ..+.......+..+...... +. .+.+.+.. ++.
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r-p~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-PT-PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC-SS-CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-cc-cceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 4689999999998743 24444333433333222211 11 12222211 000
Q ss_pred -----------------------------hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCC-------
Q 009496 364 -----------------------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGM------- 407 (533)
Q Consensus 364 -----------------------------~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~------- 407 (533)
......++..+... ...++||||+++..|+.++..|. ..++
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~-~~~~~~~~e~~ 375 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMS-KLDFNSDDEKE 375 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTT-TSCCCCHHHHH
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHH-hCCCCChHHHH
Confidence 01112233333222 23489999999999999999886 3222
Q ss_pred --------------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEE
Q 009496 408 --------------------------------KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 408 --------------------------------~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 278899999999999999999999999999999999999999999999
Q ss_pred E----cCC----CCCHhHHHHhhcccCCCCC--ccEEEEEecCc-CHHHHHHH
Q 009496 456 I----FDM----PNSIKEYVHQIGRASQMGD--EGTAIVFVNEE-NKNLFQEL 497 (533)
Q Consensus 456 ~----~~~----p~s~~~y~qriGR~gR~g~--~g~~~~l~~~~-~~~~~~~l 497 (533)
+ ||. |.|+.+|+||+|||||.|. .|.|++++++. +...+..+
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 9 998 8999999999999999997 59999999865 54444444
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.6e-44 Score=382.01 Aligned_cols=321 Identities=18% Similarity=0.205 Sum_probs=233.4
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+|+|..+++.++.|+ ++.++||+|||++|++|++...+. ++.++|++||++||.|+.+++..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~----------g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT----------SSCCEEEESSHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 464 89999999999999998 999999999999999999865432 45799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcCC------CCCCCeeEEEEeccchhh-hcc----
Q 009496 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCML-QRG---- 300 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~i~~vVvDEah~~~-~~~---- 300 (533)
+...+++++.+++||.+... ..+..+++|+|+||++| .+++..+- ..++.+.++|+||||+|+ +++
T Consensus 138 l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 99999999999999987543 44455799999999999 78887542 567899999999999998 543
Q ss_pred -----------hHHHHHHHHHhCC---------------------CCcEE------------------------EecccC
Q 009496 301 -----------FRDQVMQIFRAIS---------------------LPQIL------------------------MYSATI 324 (533)
Q Consensus 301 -----------~~~~i~~i~~~~~---------------------~~q~i------------------------~~SAT~ 324 (533)
|...+..++..++ .+|++ ++|||.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 5667777777764 23443 889997
Q ss_pred cHHHHHH---H--HhhcC-C--e----------------------------------EEEEeCCCCCCCccce-------
Q 009496 325 SQEVEKM---S--SSISK-D--I----------------------------------VVVSVGKPNMPNKAVK------- 355 (533)
Q Consensus 325 ~~~~~~~---~--~~~~~-~--~----------------------------------~~i~~~~~~~~~~~i~------- 355 (533)
+.....+ . ..++. + + ..+.+...+.+...+.
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRL 375 (853)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhh
Confidence 6422111 1 11110 0 0 0011111111111111
Q ss_pred ----------------------------------------EEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHH
Q 009496 356 ----------------------------------------QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 356 ----------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~ 395 (533)
+...+.....|...+.+.+......+.|+||||+|+..++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 1134556677888888887665455679999999999999
Q ss_pred HHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc------------------------
Q 009496 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV------------------------ 451 (533)
Q Consensus 396 ~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v------------------------ 451 (533)
.|+..|. ..|+++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 456 ~Ls~~L~-~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 456 LVSNELT-KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHH-HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHH-HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 9999998 8899999999999988888888889888 699999999999999973
Q ss_pred -------------cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 452 -------------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 452 -------------~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999988764
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-42 Score=365.59 Aligned_cols=322 Identities=19% Similarity=0.230 Sum_probs=248.6
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.||.++++++...
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 7899999999999998 99999999999999999998877652 3567999999999999999999998744
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHH-HHhCCCC
Q 009496 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQI-FRAISLP 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i-~~~~~~~ 315 (533)
.+.++..+.|+...... .....+++|+|+||+.|...+....+.+.++++||+||||++.+......+... ....+..
T Consensus 79 ~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp CGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred chhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 34577777777665543 334456899999999999999888778899999999999999865444444433 3445778
Q ss_pred cEEEecccCcH---HHHHHHHhhcCCeEEEEeCCCCCCC----ccceEEEEEe---------------------------
Q 009496 316 QILMYSATISQ---EVEKMSSSISKDIVVVSVGKPNMPN----KAVKQLAIWV--------------------------- 361 (533)
Q Consensus 316 q~i~~SAT~~~---~~~~~~~~~~~~~~~i~~~~~~~~~----~~i~~~~~~~--------------------------- 361 (533)
+++++|||+.. .+..+...+......+......... ..........
T Consensus 158 ~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
T 1wp9_A 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG 237 (494)
T ss_dssp CEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999973 3444444443333222211110000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009496 362 -------------------------------------------------------------------------------- 361 (533)
Q Consensus 362 -------------------------------------------------------------------------------- 361 (533)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 238 LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence
Q ss_pred ----------------------cchhhHHHHHHHHHhcc--CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcC---
Q 009496 362 ----------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG--- 414 (533)
Q Consensus 362 ----------------------~~~~k~~~l~~~l~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~--- 414 (533)
....|...+.+++.... ..+.++||||+++..++.+++.|. ..++.+..+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELV-KDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH-HTTCCEEEECCSSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHH-HcCCCcEEEecccc
Confidence 12234455566665532 457799999999999999999998 66999999999
Q ss_pred -----CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009496 415 -----EKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 415 -----~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
+++..+|..+++.|++|..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.|+.+.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999887
Q ss_pred CH
Q 009496 490 NK 491 (533)
Q Consensus 490 ~~ 491 (533)
+.
T Consensus 476 t~ 477 (494)
T 1wp9_A 476 TR 477 (494)
T ss_dssp SH
T ss_pred CH
Confidence 54
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-43 Score=400.62 Aligned_cols=334 Identities=16% Similarity=0.251 Sum_probs=210.3
Q ss_pred HHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009496 151 EAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 151 ~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.-.|+..|+|+|.++++.++.|+++++++|||+|||++|++|++..+... ....++++|||+||++|+.|+.+.+
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-----~~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-----PAGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-----CSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-----cccCCCeEEEEeCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999998766531 1123678999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcchH-HHHHHH
Q 009496 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFR-DQVMQI 308 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~i~~vVvDEah~~~~~~~~-~~i~~i 308 (533)
++++...++++..++|+.....+...+..+++|+|+||++|.+.+.+..+ .+.++++||+||||++...+.. ..+..+
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~ 396 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHH
Confidence 99988778999999999876665566667799999999999999988766 6889999999999999876533 223233
Q ss_pred HHh-----CCCCcEEEecccCc-----------HHHHHHHHhhcCCeEEE------------------E-eCCCCCCCc-
Q 009496 309 FRA-----ISLPQILMYSATIS-----------QEVEKMSSSISKDIVVV------------------S-VGKPNMPNK- 352 (533)
Q Consensus 309 ~~~-----~~~~q~i~~SAT~~-----------~~~~~~~~~~~~~~~~i------------------~-~~~~~~~~~- 352 (533)
+.. .+.+++++||||+. ..+..+...+....+.. . .........
T Consensus 397 ~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHH
Confidence 333 35589999999994 22222222222111110 0 000000000
Q ss_pred ----------------------cceEEE-E---------Ee---------------------------------------
Q 009496 353 ----------------------AVKQLA-I---------WV--------------------------------------- 361 (533)
Q Consensus 353 ----------------------~i~~~~-~---------~~--------------------------------------- 361 (533)
.+.+.. . |+
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00
Q ss_pred -----------------------------------------------------cchhhHHHHHHHHHhcc--CCCCCEEE
Q 009496 362 -----------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVV 386 (533)
Q Consensus 362 -----------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~lI 386 (533)
....|...|.+++.... ..+.++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 01234445555665432 44679999
Q ss_pred EEcCcccHHHHHHHHHhh-----------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCccEE
Q 009496 387 YVGSRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQV 454 (533)
Q Consensus 387 F~~s~~~~~~l~~~l~~~-----------~~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~V 454 (533)
||+++..++.|+..|... .|.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++|
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~V 716 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 716 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEE
T ss_pred EeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEE
Confidence 999999999999999843 15566678999999999999999999 999999999999999999999999
Q ss_pred EEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 455 IIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 455 I~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|+||+|+|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 717 I~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 717 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp EEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred EEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999 998 78999999987644
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.7e-43 Score=413.80 Aligned_cols=353 Identities=19% Similarity=0.264 Sum_probs=263.7
Q ss_pred CCcccCcccCC---CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccC
Q 009496 131 PAPILSFSSCS---LSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 206 (533)
Q Consensus 131 p~~~~~f~~~~---l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 206 (533)
+.++.++..++ |.....+.+...+|..|+|+|.++++.++ +++|++++||||||||++|.+|++..+..
T Consensus 897 ~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~------- 969 (1724)
T 4f92_B 897 PTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ------- 969 (1724)
T ss_dssp CCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------
T ss_pred CCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------
Confidence 34444554443 45667777777889999999999999997 56789999999999999999999999875
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHH-HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC--CCCCC
Q 009496 207 NQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--DIELD 283 (533)
Q Consensus 207 ~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--~~~l~ 283 (533)
..+.++||++|+++|+.|++..++ +|...++.++..+.|+..... +...+++|+|||||+|..++++. ...++
T Consensus 970 -~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~ 1045 (1724)
T 4f92_B 970 -SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQ 1045 (1724)
T ss_dssp -CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHH
T ss_pred -CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccc
Confidence 346689999999999999887765 577778888888887654322 23345899999999998877653 23478
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhC--------CCCcEEEecccCcHHHHHHHHhhcCCeE-EEEeCCCCCCCccc
Q 009496 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIV-VVSVGKPNMPNKAV 354 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~i 354 (533)
++++||+||+|++.+. .+..++.++.++ +..|+|++|||+++ ..+++.++..+.. .+.......+. .+
T Consensus 1046 ~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPv-pL 1122 (1724)
T 4f92_B 1046 NINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPV-PL 1122 (1724)
T ss_dssp SCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSS-CE
T ss_pred eeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCC-Ce
Confidence 8999999999988764 566666666554 56899999999986 4555555543321 11122222222 12
Q ss_pred eEEEEEecchhhH-------HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhh-----------------------
Q 009496 355 KQLAIWVESNKKK-------QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT----------------------- 404 (533)
Q Consensus 355 ~~~~~~~~~~~k~-------~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~----------------------- 404 (533)
...+......... ..+...+... ..+.++||||+|+..|+.++..|...
T Consensus 1123 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 1201 (1724)
T 4f92_B 1123 ELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLE 1201 (1724)
T ss_dssp EEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHT
T ss_pred EEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHh
Confidence 3333322222211 2233333333 34568999999999999888766311
Q ss_pred ----------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----c------CCCCCHh
Q 009496 405 ----------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----F------DMPNSIK 464 (533)
Q Consensus 405 ----------~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~------~~p~s~~ 464 (533)
....+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+..+||. | ..|.+..
T Consensus 1202 ~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~ 1281 (1724)
T 4f92_B 1202 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIY 1281 (1724)
T ss_dssp TCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHH
T ss_pred hcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHH
Confidence 1234789999999999999999999999999999999999999999888884 2 2467899
Q ss_pred HHHHhhcccCCCCC--ccEEEEEecCcCHHHHHHHH
Q 009496 465 EYVHQIGRASQMGD--EGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 465 ~y~qriGR~gR~g~--~g~~~~l~~~~~~~~~~~l~ 498 (533)
+|+||+|||||.|. .|.|++++.+.++.+++.++
T Consensus 1282 ~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1282 DVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred HHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 99999999999987 69999999999888887765
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.9e-42 Score=368.61 Aligned_cols=335 Identities=18% Similarity=0.208 Sum_probs=262.1
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+ .|+|+|..+++.++.|+ |+.++||+|||++|.+|++...+. +..++||+||++||.|..+++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 4688 99999999999999998 999999999999999999765542 4569999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhh-h-----
Q 009496 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-Q----- 298 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~-~----- 298 (533)
.+...+++++.+++||.+... .....+++|+++||++| .+++..+ .+.+..+.++|+||||+|+ |
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 999999999999999987543 33444699999999999 7888764 3567889999999999998 4
Q ss_pred ----------cchHHHHHHHHHhCC----------CCcEE-----------------EecccCcH---HHHHHHH--hhc
Q 009496 299 ----------RGFRDQVMQIFRAIS----------LPQIL-----------------MYSATISQ---EVEKMSS--SIS 336 (533)
Q Consensus 299 ----------~~~~~~i~~i~~~~~----------~~q~i-----------------~~SAT~~~---~~~~~~~--~~~ 336 (533)
++|...+..++..++ .+|++ ++|||.+. .+....+ .++
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~ 331 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELF 331 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHC
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHh
Confidence 358889999999985 46777 89999864 3332221 121
Q ss_pred C-C--eE-----EEEeCCC-------------------------------------------------------------
Q 009496 337 K-D--IV-----VVSVGKP------------------------------------------------------------- 347 (533)
Q Consensus 337 ~-~--~~-----~i~~~~~------------------------------------------------------------- 347 (533)
. + ++ .+.+...
T Consensus 332 ~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~E 411 (922)
T 1nkt_A 332 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAE 411 (922)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHH
Confidence 1 1 11 1111100
Q ss_pred --------------CCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEE
Q 009496 348 --------------NMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 348 --------------~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~i 412 (533)
+.+.... .+...+.....|...+.+.+......+.|+||||+|++.++.|+..|. ..|+++..+
T Consensus 412 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~-~~Gi~~~vL 490 (922)
T 1nkt_A 412 LHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFT-KRRIPHNVL 490 (922)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH-HTTCCCEEE
T ss_pred HHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCCEEEe
Confidence 0000000 011344555677778888776654456789999999999999999998 889999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc-----------------------------------------
Q 009496 413 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV----------------------------------------- 451 (533)
Q Consensus 413 h~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v----------------------------------------- 451 (533)
||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999888888888888877 699999999999999975
Q ss_pred -----------cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHH----HHHHHHHHhc
Q 009496 452 -----------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF----QELVDILKSS 504 (533)
Q Consensus 452 -----------~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~----~~l~~~l~~~ 504 (533)
.+||+++.|.|...|+||+||+||.|.+|.+++|++.+|.-+- ..+..+++..
T Consensus 569 ~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~ 636 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRL 636 (922)
T ss_dssp HHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHT
T ss_pred HhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHh
Confidence 4999999999999999999999999999999999998775332 3344445443
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.6e-44 Score=395.60 Aligned_cols=324 Identities=19% Similarity=0.272 Sum_probs=227.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH-HHHHHHHhc
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-EEQAKLLGK 235 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-~~~~~~~~~ 235 (533)
.|+|+|.++++.++.|+++++++|||+|||++|++|++.++...+. ...++++||++|+++|+.|+ .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----HTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----cCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999988765321 12346799999999999999 999999886
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHH------HcCCCCCCCeeEEEEeccchhhhcchH-HHHHHH
Q 009496 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL------MKHDIELDDIRMFVLDEVDCMLQRGFR-DQVMQI 308 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l------~~~~~~l~~i~~vVvDEah~~~~~~~~-~~i~~i 308 (533)
. ++++..+.|+.....+...+..+.+|+|+||++|.+.+ ....+.+.++++|||||||++...++. ..+...
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp T-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred c-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 5 47888999987766555666678999999999999888 444567889999999999998654422 222222
Q ss_pred HHhC--------------CCCcEEEecccCcH-----------HHHHHHHhhcCCeEEEEeCCC-----CCCCccceEEE
Q 009496 309 FRAI--------------SLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLA 358 (533)
Q Consensus 309 ~~~~--------------~~~q~i~~SAT~~~-----------~~~~~~~~~~~~~~~i~~~~~-----~~~~~~i~~~~ 358 (533)
+... +.++++++|||+.. .+..+...+....+....... ....+ ...+
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p--~~~~ 239 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP--CKKF 239 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC--EEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC--ceEE
Confidence 2221 66899999999975 222232222220100000000 00000 0000
Q ss_pred EEec----------------------------------------------------------------------------
Q 009496 359 IWVE---------------------------------------------------------------------------- 362 (533)
Q Consensus 359 ~~~~---------------------------------------------------------------------------- 362 (533)
.+..
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred -----------------------------------------------------------chhhHHHHHHHHHhcc--CC-
Q 009496 363 -----------------------------------------------------------SNKKKQKLFDILMSKQ--HF- 380 (533)
Q Consensus 363 -----------------------------------------------------------~~~k~~~l~~~l~~~~--~~- 380 (533)
...|...|.+++.... ..
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0011112223333211 11
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhc------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCCcEEEEeccccccC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTT------GMKALSIHGE--------KPMKERREIMRSFLVGEVPVIVATGILGRGV 446 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~------~~~~~~ih~~--------~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gl 446 (533)
+.++||||+++..++.++..|. .. |+.+..+||+ |++.+|..+++.|++|+++|||||+++++||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~-~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWIT-ENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHH-SSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHH-hCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 6799999999999999999998 44 7899999999 9999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcC
Q 009496 447 ELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 447 di~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~ 490 (533)
|+|++++||+||+|+|+..|+||+|||||.| +.++++....+
T Consensus 479 Dip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 479 DIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred ccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999999999987654 34444444333
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-42 Score=379.05 Aligned_cols=337 Identities=15% Similarity=0.209 Sum_probs=251.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc
Q 009496 144 QKLLQNIEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g------~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
+.+.+.+...|| .||++|.++++.++.+ ++++++|+||||||++|++|++..+.. +.+++|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------g~qvlvla 424 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------GFQTAFMV 424 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----------TSCEEEEC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEe
Confidence 344455677899 9999999999998864 589999999999999999999987653 56799999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH---HHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009496 218 PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 218 Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
||++|+.|+++.++++....++++..++|+...... ...+..+ ++|+|+||+.|.+ ...+.++++||+||+
T Consensus 425 Ptr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 425 PTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESC
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEeccc
Confidence 999999999999999998888999999999876553 3445554 9999999987743 456889999999999
Q ss_pred chhhhcchHHHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHH
Q 009496 294 DCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDI 373 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 373 (533)
|++.... ...+......+++++||||+.+....+......+...+.... .....+.. ......+...+.+.
T Consensus 500 Hr~g~~q----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p--~~r~~i~~---~~~~~~~~~~l~~~ 570 (780)
T 1gm5_A 500 HRFGVKQ----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMP--PGRKEVQT---MLVPMDRVNEVYEF 570 (780)
T ss_dssp CCC---------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCC--SSCCCCEE---CCCCSSTHHHHHHH
T ss_pred chhhHHH----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccC--CCCcceEE---EEeccchHHHHHHH
Confidence 9963221 111112225689999999986654443332222222222111 11111221 12223445566677
Q ss_pred HHhccCCCCCEEEEEcCcc--------cHHHHHHHHHh-h-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 009496 374 LMSKQHFTPPAVVYVGSRL--------GADLLSNAISV-T-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 374 l~~~~~~~~~~lIF~~s~~--------~~~~l~~~l~~-~-~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
+......+.+++|||++.+ .++.+++.|.. . .++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 7666666789999999764 46788888873 2 377899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCC-CHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCC
Q 009496 444 RGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 506 (533)
Q Consensus 444 ~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~ 506 (533)
+|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++++.+.. ....++.++....
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~~~rl~~l~~~~d 713 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-AMERLRFFTLNTD 713 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-HHHHHHHHHTCCC
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-HHHHHHHHHhhhc
Confidence 999999999999999996 7899999999999999999999999854433 3334455555433
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.6e-42 Score=402.03 Aligned_cols=339 Identities=18% Similarity=0.218 Sum_probs=255.1
Q ss_pred CCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc-ccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 154 GYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLH-HSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
||..|+++|++++|.++ +++|++++||||||||++|.++++..+...... ......+.++||++|+++|+.|+.+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999987 688999999999999999999999998754321 1122356789999999999999999998
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC--CCCCCeeEEEEeccchhhhcchHHHHHHHH
Q 009496 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~i~~vVvDEah~~~~~~~~~~i~~i~ 309 (533)
+....+++++..++|+.....+ ...+++|+|||||+|..++++.. ..++++++||+||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999888664331 13458999999999976665432 2378899999999998765 4667766666
Q ss_pred HhC--------CCCcEEEecccCcHHHHHHHHhhcCCeE--EEEeCCCCCCCccceEEEEEecchhh---HH----HHHH
Q 009496 310 RAI--------SLPQILMYSATISQEVEKMSSSISKDIV--VVSVGKPNMPNKAVKQLAIWVESNKK---KQ----KLFD 372 (533)
Q Consensus 310 ~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~~~~k---~~----~l~~ 372 (533)
.++ +..|+|++|||+|+ .++++.++...+. .+.......+. .+.+.+........ .. .+.+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPv-pL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPV-PLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSS-CEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccC-ccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 543 57899999999986 5556665543320 11112222222 23333333332211 11 2223
Q ss_pred HHHhccCCCCCEEEEEcCcccHHHHHHHHHhh------------------------------------cCCeEEEEcCCC
Q 009496 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVT------------------------------------TGMKALSIHGEK 416 (533)
Q Consensus 373 ~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~------------------------------------~~~~~~~ih~~~ 416 (533)
.+.+. ..++++||||+|++.|+.++..|.+. ....+..+||||
T Consensus 310 ~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 310 KIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 33322 23568999999999999998887521 123477899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cC------CCCCHhHHHHhhcccCCCCC--ccEEEE
Q 009496 417 PMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD------MPNSIKEYVHQIGRASQMGD--EGTAIV 484 (533)
Q Consensus 417 ~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~------~p~s~~~y~qriGR~gR~g~--~g~~~~ 484 (533)
++.+|..+++.|++|.++|||||+++++|||+|..++||. |+ .|.+..+|.||+|||||.|. .|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999885 44 35689999999999999875 699999
Q ss_pred EecCcCHHHHHHHHH
Q 009496 485 FVNEENKNLFQELVD 499 (533)
Q Consensus 485 l~~~~~~~~~~~l~~ 499 (533)
++++.+...+..++.
T Consensus 469 ~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 469 ITSHGELQYYLSLLN 483 (1724)
T ss_dssp EEESTTCCHHHHHTT
T ss_pred EecchhHHHHHHHHc
Confidence 999888777766553
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5e-41 Score=379.00 Aligned_cols=310 Identities=20% Similarity=0.228 Sum_probs=239.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+| .|+|+|.++++.++.|++++++||||||||++|++++...+. .++++||++|+++|+.|+++.++++
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 44 489999999999999999999999999999999998877543 3578999999999999999988876
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCC
Q 009496 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS 313 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~ 313 (533)
.. +.++..+.|+.... ...+|+|+||++|.+.+.+....+.++++|||||||++.+++++..+..++..++
T Consensus 106 ~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp C----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred cC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 53 46778888876533 3479999999999999988877889999999999999999999988999888884
Q ss_pred -CCcEEEecccCcHHH--HHHHHhhc-CCeEEEEeCCCCCCCccce----EEEEEe------------------------
Q 009496 314 -LPQILMYSATISQEV--EKMSSSIS-KDIVVVSVGKPNMPNKAVK----QLAIWV------------------------ 361 (533)
Q Consensus 314 -~~q~i~~SAT~~~~~--~~~~~~~~-~~~~~i~~~~~~~~~~~i~----~~~~~~------------------------ 361 (533)
..++|++|||+++.. ..+..... .+...+.......+..... .....+
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 689999999997543 33333222 2233332222211111000 000000
Q ss_pred --------------------------------------------------------------cchhhHHHHHHHHHhccC
Q 009496 362 --------------------------------------------------------------ESNKKKQKLFDILMSKQH 379 (533)
Q Consensus 362 --------------------------------------------------------------~~~~k~~~l~~~l~~~~~ 379 (533)
....+...++..+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-- 334 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-- 334 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHT--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--
Confidence 1112234555555443
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhhcCC---------------------------------------eEEEEcCCCCHHH
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVTTGM---------------------------------------KALSIHGEKPMKE 420 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~---------------------------------------~~~~ih~~~~~~~ 420 (533)
...++||||+++..|+.++..|. ..++ .+..+||+|++.+
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLE-GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTT-TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 34689999999999999999986 3333 4789999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC---------CHhHHHHhhcccCCCC--CccEEEEEec
Q 009496 421 RREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN---------SIKEYVHQIGRASQMG--DEGTAIVFVN 487 (533)
Q Consensus 421 r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~---------s~~~y~qriGR~gR~g--~~g~~~~l~~ 487 (533)
|..+++.|++|.++|||||+++++|||+|+ ..||+++.|. |..+|+||+|||||.| ..|.|++++.
T Consensus 414 R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 414 KELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999999999 6667666655 9999999999999998 5688888883
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.2e-39 Score=370.76 Aligned_cols=323 Identities=18% Similarity=0.211 Sum_probs=249.8
Q ss_pred CCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhC----CC--cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009496 140 CSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALS----GK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 140 ~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~i~~----g~--~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
++.+..+.+.+.. .+|. |||+|.++++.++. ++ +++++++||+|||++|+++++..+. .+++
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------~g~~ 654 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------NHKQ 654 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------TTCE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------hCCe
Confidence 4566777777755 4775 79999999999985 66 8999999999999999988877543 3568
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH---HHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
++|++||++|+.|+++.++++....++++..+.+....... ...+..+ ++|+|+||+.| ...+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceE
Confidence 99999999999999999998888778888888776554433 3344454 99999999765 244678999999
Q ss_pred EEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhH
Q 009496 289 VLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 367 (533)
Q Consensus 289 VvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 367 (533)
|+||+|++.. ....++..+ ...++++||||+.+....+......++..+... ......+...+......
T Consensus 730 IiDEaH~~g~-----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~~--- 799 (1151)
T 2eyq_A 730 IVDEEHRFGV-----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDSM--- 799 (1151)
T ss_dssp EEESGGGSCH-----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCHH---
T ss_pred EEechHhcCh-----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCHH---
Confidence 9999999632 223333333 568999999998766666665555554433221 11122233333322222
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccC
Q 009496 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGV 446 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gl 446 (533)
.+.+.+......+++++|||+++..++.+++.|+... +..+..+||+|++.+|..+++.|++|+++|||||+++++|+
T Consensus 800 -~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 800 -VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp -HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred -HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2222222223346789999999999999999998432 78999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCC-CCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009496 447 ELLGVRQVIIFDM-PNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 447 di~~v~~VI~~~~-p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
|+|++++||+++. +.++.+|.||+||+||.|+.|.|++++.+.
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999998 579999999999999999999999998764
No 41
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.6e-40 Score=316.32 Aligned_cols=238 Identities=34% Similarity=0.554 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhH
Q 009496 108 SLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTA 187 (533)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~ 187 (533)
.++.+++..+++...+.+.|...|.|+.+|+++++++.+.+.+.+.||..|+|+|.++++.++.|++++++||||||||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecC
Q 009496 188 SFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGT 267 (533)
Q Consensus 188 ~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~T 267 (533)
+|++|++.++...+.. ....++++||++||++|+.|+.+.++++....++++..++||.....+...+..+++|+|+|
T Consensus 82 ~~~l~~l~~l~~~~~~--~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T 159 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 159 (242)
T ss_dssp HHHHHHHHHHHTSCCC--CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHHhcccc--ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEEC
Confidence 9999999988753221 22457889999999999999999999998888899999999999998888888899999999
Q ss_pred hHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCC
Q 009496 268 PGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 268 p~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 346 (533)
|++|.+++.+....+.++++||+||||++.+++|...+..++..+ +..|+++||||+++.+..++..++.+++.+.++.
T Consensus 160 p~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999888889999999999999999999999999999998 6789999999999999999999999999998865
Q ss_pred C
Q 009496 347 P 347 (533)
Q Consensus 347 ~ 347 (533)
.
T Consensus 240 ~ 240 (242)
T 3fe2_A 240 L 240 (242)
T ss_dssp -
T ss_pred C
Confidence 4
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.6e-42 Score=371.43 Aligned_cols=325 Identities=13% Similarity=0.164 Sum_probs=241.8
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++++.+.+.+... +..++|+|.++++.++++++++++||||||||++|++|++..+.. .++++||++||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~~~~vLvl~Pt 224 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------RRLRTLILAPT 224 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESS
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCeEEEEcCh
Confidence 33444444333332 478899998899999999999999999999999999999988764 35789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 009496 220 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~ 299 (533)
++||.|+.+.++. ..+. ..++. .. .....+..+.++|.+.+...+... ..+.++++||+||||++ +.
T Consensus 225 reLa~Qi~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 225 RVVAAEMEEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Cc
Confidence 9999999877652 2222 11111 00 000123456678888887766655 35889999999999998 67
Q ss_pred chHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhc
Q 009496 300 GFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK 377 (533)
Q Consensus 300 ~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 377 (533)
+|...+..++..+ +..|+++||||++..+..+.. .++..+.+... .+. .+...++..+..
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~~~-------------~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-IPE-------------RSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-CCS-------------SCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-CCH-------------HHHHHHHHHHHh-
Confidence 7888888777776 678999999999876543322 12222222111 000 011122333333
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEE---
Q 009496 378 QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQV--- 454 (533)
Q Consensus 378 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~V--- 454 (533)
..+++||||+++..++.+++.|. ..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLR-KSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHH-HTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred --CCCCEEEEECChhHHHHHHHHHH-HcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEEC
Confidence 25689999999999999999998 679999999985 788899999999999999999999999997 8888
Q ss_pred -----------------EEcCCCCCHhHHHHhhcccCCCCC-ccEEEEEec---CcCHHHHHHHHHHHHhcCCCCCHHHH
Q 009496 455 -----------------IIFDMPNSIKEYVHQIGRASQMGD-EGTAIVFVN---EENKNLFQELVDILKSSGAGIPRELI 513 (533)
Q Consensus 455 -----------------I~~~~p~s~~~y~qriGR~gR~g~-~g~~~~l~~---~~~~~~~~~l~~~l~~~~~~~p~~l~ 513 (533)
|+|+.|.|.++|+||+||+||.|. .|.|++|++ +.+...+..+...+......+|..+.
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~~ 505 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGII 505 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcchh
Confidence 777889999999999999999965 899999997 77888888888888877777776544
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.8e-41 Score=351.08 Aligned_cols=312 Identities=14% Similarity=0.180 Sum_probs=226.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCcE-EEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 154 GYDMPTPVQMQAIPSALSGKSL-LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~v-li~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
|+.+|+|+|. ++|.++.++++ +++||||||||++|++|++.++.. .++++||++||++|+.|+.+.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEMEEALR- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHHHHHhc-
Confidence 7889999985 79999998887 899999999999999999987664 35789999999999999988764
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHH--
Q 009496 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR-- 310 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~-- 310 (533)
+..+....+.... ....+..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+...+..+..
T Consensus 70 -----g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 70 -----GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp -----TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred -----Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 2222211111110 11234568899999998887765 45889999999999987 4443333332322
Q ss_pred hCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcC
Q 009496 311 AISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS 390 (533)
Q Consensus 311 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s 390 (533)
..+..++++||||++.....+ +..++..+.... ..+.... ..+...+.. ..+++||||++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~~-------------~~~~~~l~~---~~~~~lVF~~s 197 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPERSW-------------NTGFDWITD---YQGKTVWFVPS 197 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSCC-------------SSSCHHHHH---CCSCEEEECSS
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCchhh-------------HHHHHHHHh---CCCCEEEEcCC
Confidence 236789999999998744322 222222222211 1111100 011222322 24589999999
Q ss_pred cccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC------------
Q 009496 391 RLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------------ 458 (533)
Q Consensus 391 ~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~------------ 458 (533)
+..++.++..|. ..++.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 198 ~~~a~~l~~~L~-~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~ 271 (451)
T 2jlq_A 198 IKAGNDIANCLR-KSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGP 271 (451)
T ss_dssp HHHHHHHHHHHH-TTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSS
T ss_pred HHHHHHHHHHHH-HcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccc
Confidence 999999999998 67999999999754 57999999999999999999999999999 9999999
Q ss_pred --------CCCCHhHHHHhhcccCCCCC-ccEEEEEecCcC---HHHHHHHHHHHHhcCCCCCHHHHh
Q 009496 459 --------MPNSIKEYVHQIGRASQMGD-EGTAIVFVNEEN---KNLFQELVDILKSSGAGIPRELIN 514 (533)
Q Consensus 459 --------~p~s~~~y~qriGR~gR~g~-~g~~~~l~~~~~---~~~~~~l~~~l~~~~~~~p~~l~~ 514 (533)
.|.|..+|+||+||+||.|. .|.+++|+...+ ..........+...+..+|.+++.
T Consensus 272 ~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 2jlq_A 272 ERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIP 339 (451)
T ss_dssp CEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCCC
T ss_pred ceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHhHH
Confidence 99999999999999999998 889988875432 222222234455667788866643
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.4e-41 Score=356.38 Aligned_cols=312 Identities=13% Similarity=0.121 Sum_probs=232.4
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009496 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
...|+|+|.++++.++.+++++++++||+|||++|++++...+.. .++++|||+||++|+.||.+.++++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 348999999999999999999999999999999999888876643 23489999999999999999999986
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-C
Q 009496 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S 313 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~ 313 (533)
...+..+..+.|+.....+ +..+.+|+|+||+.|.. .....+.++++||+||||++.. ..+..++..+ +
T Consensus 182 ~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~ 251 (510)
T 2oca_A 182 LFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (510)
T ss_dssp SSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT
T ss_pred cCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc
Confidence 6555788888888765543 34568999999997643 2334578899999999999865 4566777777 6
Q ss_pred CCcEEEecccCcHHHHHHHH-hhcCCeEEEEeCCCC------CCCccceEEEEEec---------------------chh
Q 009496 314 LPQILMYSATISQEVEKMSS-SISKDIVVVSVGKPN------MPNKAVKQLAIWVE---------------------SNK 365 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~~~~-~~~~~~~~i~~~~~~------~~~~~i~~~~~~~~---------------------~~~ 365 (533)
..++++||||+++....+.. .....+..+...... .....+........ ...
T Consensus 252 ~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 252 CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 77999999999765422111 111112221111110 11111111111111 112
Q ss_pred hHHHHHHHHHhccCCCC-CEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-cccc
Q 009496 366 KKQKLFDILMSKQHFTP-PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT-GILG 443 (533)
Q Consensus 366 k~~~l~~~l~~~~~~~~-~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT-~~~~ 443 (533)
+...+.+++......++ ++|||++ ...++.+++.|. ..+..+..+||++++.+|..+++.|++|+.+||||| ++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~-~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~ 409 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIK-NEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS 409 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHH-TTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHH-HcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh
Confidence 23345555554433334 4555555 889999999998 556699999999999999999999999999999999 9999
Q ss_pred ccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEec
Q 009496 444 RGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 444 ~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~ 487 (533)
+|+|+|++++||++++|.+...|+||+||+||.|+.|.++++++
T Consensus 410 ~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 410 TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999998875555554
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.7e-39 Score=353.80 Aligned_cols=338 Identities=16% Similarity=0.187 Sum_probs=249.6
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCC
Q 009496 132 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 210 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 210 (533)
.++..|+++++++.+.+.+...+ ..|++.|.++|+.++ .+++++++||||||||+ ++|++..... . ..+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~---~~~~g 140 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--M---PHLEN 140 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--C---GGGGT
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--c---ccCCC
Confidence 46778999999999999999988 789999999999887 55689999999999999 5666622211 1 11235
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHh-cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEE
Q 009496 211 PLAMVLTPTRELCIQVEEQAKLLG-KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 289 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vV 289 (533)
.+++|++|+++|+.|+...+.... ...+..+......... ...+.+|+++|||++.+.+.... .+.++++||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lI 213 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMEDH-DLSRYSCII 213 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhCc-cccCCCEEE
Confidence 679999999999999887665443 2222222221111111 11357899999999998887653 589999999
Q ss_pred Eeccch-hhhcc-hHHHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhH
Q 009496 290 LDEVDC-MLQRG-FRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 367 (533)
Q Consensus 290 vDEah~-~~~~~-~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 367 (533)
+||+|. +++.. ....+..+....+..++++||||++. ..+...+...++ +.+..... .+.+.+.......+.
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~~~~~~~v-i~v~gr~~---pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQRYFNDAPL-LAVPGRTY---PVELYYTPEFQRDYL 287 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHHHTTSCCE-EECCCCCC---CEEEECCSSCCSCHH
T ss_pred ecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHHHhcCCCc-ccccCccc---ceEEEEecCCchhHH
Confidence 999995 55533 23445556666678899999999964 345444443343 33333222 233333333333333
Q ss_pred HHHHHHHHhc--cCCCCCEEEEEcCcccHHHHHHHHHh----------hcCCeEEEEcCCCCHHHHHHHHHHHh-----c
Q 009496 368 QKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV----------TTGMKALSIHGEKPMKERREIMRSFL-----V 430 (533)
Q Consensus 368 ~~l~~~l~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~----------~~~~~~~~ih~~~~~~~r~~~~~~f~-----~ 430 (533)
...+..+... ....+++||||+++.+++.++..|.. ..++.+..+||++++.+|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3333322221 12367899999999999999999973 15788999999999999999999999 9
Q ss_pred CCCcEEEEeccccccCCCCCccEEEEcCC------------------CCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 431 GEVPVIVATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 431 g~~~VLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|..+|||||+++++|||+|++++||++++ |.|..+|+||+|||||. ..|.|+.|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999999887 89999999999999999 89999999986543
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.6e-41 Score=349.68 Aligned_cols=289 Identities=16% Similarity=0.201 Sum_probs=204.1
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 009496 168 SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 168 ~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.+++|++++++||||||||++|++|++..+.. .++++||++||++||.|+++.++.+ ++ .. .++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~----~v--~~-~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL----DV--KF-HTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS----CE--EE-ESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC----Ce--EE-ecc
Confidence 35689999999999999999999999987764 3578999999999999999877633 22 11 111
Q ss_pred CchHHHHHHHHcCCce-eecChHHHHHHHH--------cCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHh--CCCCc
Q 009496 248 DAMARQVYRIQQGVEL-IVGTPGRLIDLLM--------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA--ISLPQ 316 (533)
Q Consensus 248 ~~~~~~~~~l~~~~~I-iv~Tp~~l~~~l~--------~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~--~~~~q 316 (533)
.+ .++||+++++++. .....+.++++||+||+|++ +.++...+..+... ....|
T Consensus 68 --------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 68 --------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp --------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred --------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 11 3677755532221 22345789999999999998 33333222222222 25789
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHH
Q 009496 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~ 396 (533)
+++||||+++.+..+.... .++... ...+....+ ..++..+.. .++++||||+++..++.
T Consensus 133 ~l~~SAT~~~~~~~~~~~~--~~~~~~--------------~~~~~~~~~-~~~~~~l~~---~~~~~lVF~~s~~~a~~ 192 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHSN--GEIEDV--------------QTDIPSEPW-NTGHDWILA---DKRPTAWFLPSIRAANV 192 (440)
T ss_dssp EEEECSSCTTCCCSSCCCS--SCEEEE--------------ECCCCSSCC-SSSCHHHHH---CCSCEEEECSCHHHHHH
T ss_pred EEEEeCCCCchhhhhhhcC--CCeeEe--------------eeccChHHH-HHHHHHHHh---cCCCEEEEeCCHHHHHH
Confidence 9999999987644332211 111110 001111111 112223322 25689999999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE-------------------c
Q 009496 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-------------------F 457 (533)
Q Consensus 397 l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-------------------~ 457 (533)
+++.|+ ..++.+..+|| .+|..+++.|++|+++|||||+++++|+|+| +++||+ +
T Consensus 193 l~~~L~-~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 193 MAASLR-KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp HHHHHH-HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred HHHHHH-HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 999998 66999999999 3688999999999999999999999999999 999996 8
Q ss_pred CCCCCHhHHHHhhcccCCC-CCccEEEEEe---cCcCHHHHHHHHHHHHhcCCCCCHHHH
Q 009496 458 DMPNSIKEYVHQIGRASQM-GDEGTAIVFV---NEENKNLFQELVDILKSSGAGIPRELI 513 (533)
Q Consensus 458 ~~p~s~~~y~qriGR~gR~-g~~g~~~~l~---~~~~~~~~~~l~~~l~~~~~~~p~~l~ 513 (533)
+.|.+..+|+||+||+||. |+.|.|++|+ ++.+...+..+...+...+.++|..+.
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~ 326 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMV 326 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGCC
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccccc
Confidence 8999999999999999997 6899999996 677888888888888888888776543
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.7e-39 Score=342.46 Aligned_cols=293 Identities=19% Similarity=0.211 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009496 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..|+|+|.++++.++.++++++++|||+|||++|++++... +.++||++|+++|+.||.+.+++|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGGG--
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHhC--
Confidence 37999999999999999999999999999999998887642 356999999999999999988874
Q ss_pred CCCCe-EEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCC
Q 009496 236 GLPFK-TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 314 (533)
Q Consensus 236 ~~~~~-~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~ 314 (533)
+.. +..+.|+.. ...+|+|+||+.+...+... ..++++||+||||++.+.+|. .++..++.
T Consensus 157 --~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~----~~~~~~~~ 218 (472)
T 2fwr_A 157 --GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSIA 218 (472)
T ss_dssp --CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTH----HHHHTCCC
T ss_pred --CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHH----HHHHhcCC
Confidence 667 666666654 24789999999997766531 245899999999999887765 46667788
Q ss_pred CcEEEecccCcH-------------------HHHHHHHhhcCCeEEE--EeCCCC---------------------C---
Q 009496 315 PQILMYSATISQ-------------------EVEKMSSSISKDIVVV--SVGKPN---------------------M--- 349 (533)
Q Consensus 315 ~q~i~~SAT~~~-------------------~~~~~~~~~~~~~~~i--~~~~~~---------------------~--- 349 (533)
.+++++|||+.+ ....+...++.++... .+.... .
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999972 2233323333332211 110000 0
Q ss_pred CCccceEEE---------------------EEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCe
Q 009496 350 PNKAVKQLA---------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMK 408 (533)
Q Consensus 350 ~~~~i~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~ 408 (533)
....+.+.+ .......|...+.+++.. ..+.++||||+++..++.+++.|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~------ 370 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL------ 370 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT------
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC------
Confidence 000000000 001233456677777766 346799999999999999998874
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCc-cE--EEEE
Q 009496 409 ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GT--AIVF 485 (533)
Q Consensus 409 ~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~-g~--~~~l 485 (533)
+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|+|...|+||+||+||.|+. +. ++.|
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999999854 34 4445
Q ss_pred ecCc
Q 009496 486 VNEE 489 (533)
Q Consensus 486 ~~~~ 489 (533)
++..
T Consensus 451 v~~~ 454 (472)
T 2fwr_A 451 ISRG 454 (472)
T ss_dssp EECS
T ss_pred EeCC
Confidence 5544
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.6e-39 Score=351.91 Aligned_cols=315 Identities=16% Similarity=0.201 Sum_probs=219.8
Q ss_pred HHHcCCC-----CCCHHHH-----HHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009496 150 IEAAGYD-----MPTPVQM-----QAIPSAL------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 150 l~~~g~~-----~p~~~Q~-----~~i~~i~------~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+...||. .|+++|. ++||.++ .+++++++||||||||++|++|++..+.. .++++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---------~~~~~ 273 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---------KRLRT 273 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---------TTCCE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCcE
Confidence 3445666 8999999 9999988 89999999999999999999999988764 35789
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009496 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
||++||++||.|+++.++.+ ++. . ..+. ... ....+.-+-+.+.+.+...+... ..+.++++||+|||
T Consensus 274 lilaPTr~La~Q~~~~l~~~----~i~--~-~~~~-l~~---v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEa 341 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGL----PVR--Y-LTPA-VQR---EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEA 341 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTS----CCE--E-CCC----C---CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEEST
T ss_pred EEEccHHHHHHHHHHHHhcC----Cee--e-eccc-ccc---cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCC
Confidence 99999999999998877644 222 1 1110 000 00011123344555554444443 56889999999999
Q ss_pred chhhhcchHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHH
Q 009496 294 DCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 371 (533)
|++ +..+...+..+.... +..++++||||++..+..+... ..++..... ...... ...++
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~--------------~~~~~~-~~~~l 403 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS--------------EIPDRA-WSSGF 403 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCSSC-CSSCC
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee--------------ecCHHH-HHHHH
Confidence 998 222222222222222 5789999999998654322211 111111000 011111 11122
Q ss_pred HHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc
Q 009496 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
..+.. .++++||||+++..++.++..|+ ..++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +
T Consensus 404 ~~l~~---~~~~~lVF~~s~~~~e~la~~L~-~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v 474 (673)
T 2wv9_A 404 EWITD---YAGKTVWFVASVKMSNEIAQCLQ-RAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-A 474 (673)
T ss_dssp HHHHS---CCSCEEEECSSHHHHHHHHHHHH-TTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-C
T ss_pred HHHHh---CCCCEEEEECCHHHHHHHHHHHH-hCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-C
Confidence 23322 36799999999999999999998 679999999994 799999999999999999999999999999 9
Q ss_pred cEEEE--------------------cCCCCCHhHHHHhhcccCCC-CCccEEEEEe---cCcCHHHHHHHHHHHHhcCCC
Q 009496 452 RQVII--------------------FDMPNSIKEYVHQIGRASQM-GDEGTAIVFV---NEENKNLFQELVDILKSSGAG 507 (533)
Q Consensus 452 ~~VI~--------------------~~~p~s~~~y~qriGR~gR~-g~~g~~~~l~---~~~~~~~~~~l~~~l~~~~~~ 507 (533)
++||+ |++|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..+...+......
T Consensus 475 ~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~ 554 (673)
T 2wv9_A 475 SRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIH 554 (673)
T ss_dssp SEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSC
T ss_pred cEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhcc
Confidence 99998 67899999999999999999 7899999996 566766676666665554445
Q ss_pred CCHHH
Q 009496 508 IPREL 512 (533)
Q Consensus 508 ~p~~l 512 (533)
++..+
T Consensus 555 ~~~g~ 559 (673)
T 2wv9_A 555 LPNGL 559 (673)
T ss_dssp BTTTB
T ss_pred CCchh
Confidence 55433
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.6e-39 Score=345.02 Aligned_cols=278 Identities=16% Similarity=0.150 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.++++|.++++.+..+++++++||||||||++|.+|++. .+.++||++|||+||.|+.+.+.+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~~-- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKAH-- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHHh--
Confidence 455667777777778899999999999999999988764 24579999999999999988776554
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCC-C
Q 009496 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-P 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~-~ 315 (533)
+..+...+|+.. +..+.+|+|+||++| +....+.++++++||+|||| +++.+|...+..+++.++. .
T Consensus 282 -g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 282 -GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp -SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred -CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcC
Confidence 344556666654 245689999999998 45667778899999999997 4567888888888888843 3
Q ss_pred c--EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCccc
Q 009496 316 Q--ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 316 q--~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~ 393 (533)
+ ++++|||++..+. ........+...... .+ ........ + .....+++||||++++.
T Consensus 350 ~~llil~SAT~~~~i~----~~~p~i~~v~~~~~~----~i----~~~~~~~~-------l--~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT----VPHPNIEEVALSNTG----EI----PFYGKAIP-------I--EAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp CSEEEEEESSCTTCCC----CCCTTEEEEECBSCS----SE----EETTEEEC-------G--GGSSSSEEEEECSCHHH
T ss_pred CceEEEECCCCCcccc----cCCcceEEEeecccc----hh----HHHHhhhh-------h--hhccCCcEEEEeCCHHH
Confidence 4 6788999987321 000011111111100 00 00110000 0 11245689999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEE----------EcC-----
Q 009496 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI----------IFD----- 458 (533)
Q Consensus 394 ~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI----------~~~----- 458 (533)
++.+++.|+ ..++.+..+||++++++ |.++..+|||||+++++|||++ +++|| |||
T Consensus 409 ae~la~~L~-~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~ 479 (666)
T 3o8b_A 409 CDELAAKLS-GLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTF 479 (666)
T ss_dssp HHHHHHHHH-TTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSC
T ss_pred HHHHHHHHH-hCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccc
Confidence 999999998 77999999999999875 4567779999999999999997 99988 677
Q ss_pred ------CCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHH
Q 009496 459 ------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 493 (533)
Q Consensus 459 ------~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~ 493 (533)
.|.+.++|+||+||+|| |+.|. ++|+++.+...
T Consensus 480 gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 480 TIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 99998776544
No 50
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.7e-37 Score=298.37 Aligned_cols=238 Identities=34% Similarity=0.583 Sum_probs=202.5
Q ss_pred hcCceEecCCCCC--cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHH
Q 009496 120 RLEINVKGDAVPA--PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 120 ~~~i~~~~~~~p~--~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
++++.++|...|. ++.+|+++++++.+.++|...||..|+|+|.++++.++.|++++++||||||||++|++|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4567888888887 89999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhhhcc--cCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHH
Q 009496 198 ANIRLHH--SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL 275 (533)
Q Consensus 198 ~~~~~~~--~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l 275 (533)
....... .....++++||++||++|+.|+.+.++++....++++..++||.....+...+..+++|+|+||++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 7532110 01234578999999999999999999999988889999999999888888888888999999999999999
Q ss_pred HcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--C---CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCC
Q 009496 276 MKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP 350 (533)
Q Consensus 276 ~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 350 (533)
......+.++++||+||||++.+++|...+..++..+ + ..|+++||||+++.+..++..++.+++.+.++.....
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 9888889999999999999999999999999999964 3 5789999999999999999999999999988877666
Q ss_pred CccceEE
Q 009496 351 NKAVKQL 357 (533)
Q Consensus 351 ~~~i~~~ 357 (533)
..++.|.
T Consensus 246 ~~~i~q~ 252 (253)
T 1wrb_A 246 SDSIKQE 252 (253)
T ss_dssp -------
T ss_pred cCCceec
Confidence 6666553
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1e-38 Score=333.93 Aligned_cols=273 Identities=16% Similarity=0.197 Sum_probs=198.4
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEE
Q 009496 166 IPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVV 245 (533)
Q Consensus 166 i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~ 245 (533)
...+..+++++++||||||||++|++|++..+.. .++++||++||++|+.|+.+.++ +..+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhc------CceEeEEe
Confidence 3445678999999999999999999999988764 35789999999999999988775 22222111
Q ss_pred cCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch-----hhhcchHHHHHHHHHhCCCCcEEEe
Q 009496 246 GGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-----MLQRGFRDQVMQIFRAISLPQILMY 320 (533)
Q Consensus 246 gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~-----~~~~~~~~~i~~i~~~~~~~q~i~~ 320 (533)
+.... .-..+.-+.++|.+.+...+... ..+.++++||+||||+ ++..++...+ ...+..|+++|
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~----~~~~~~~~il~ 149 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK----VELGEAAAIFM 149 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH----HHTTSCEEEEE
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH----hccCCccEEEE
Confidence 11100 01233457788999887776654 4588999999999998 4555443332 23368999999
Q ss_pred cccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHH
Q 009496 321 SATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNA 400 (533)
Q Consensus 321 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~ 400 (533)
|||++..+..+... ..++..... ..+... ...+++.+... .+++||||+++..++.++..
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~--~~~~~~-------------~~~~~~~l~~~---~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQD--EIPDRA-------------WSSGYEWITEY---AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEEC--CCCSSC-------------CSSCCHHHHHC---CSCEEEECSCHHHHHHHHHH
T ss_pred EcCCCcchhhhccC--CCCeEEecc--cCCcch-------------hHHHHHHHHhc---CCCEEEEeCChHHHHHHHHH
Confidence 99998754332211 222222111 001000 01112233322 56899999999999999999
Q ss_pred HHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE--------------------cCCC
Q 009496 401 ISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII--------------------FDMP 460 (533)
Q Consensus 401 l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~--------------------~~~p 460 (533)
|+ ..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 210 L~-~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 210 LQ-RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HH-HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HH-hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 98 679999999995 6888999999999999999999999999999 99999 7799
Q ss_pred CCHhHHHHhhcccCCCCC-ccEEEEEecCc
Q 009496 461 NSIKEYVHQIGRASQMGD-EGTAIVFVNEE 489 (533)
Q Consensus 461 ~s~~~y~qriGR~gR~g~-~g~~~~l~~~~ 489 (533)
.|..+|+||+||+||.|. .|.+++|+...
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999997 89999999875
No 52
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=290.79 Aligned_cols=229 Identities=36% Similarity=0.606 Sum_probs=198.4
Q ss_pred HHHHHHhhcCceEecCCCCCcccCcccC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009496 113 QTDSLRKRLEINVKGDAVPAPILSFSSC----SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 113 ~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
+++.++++..+.+.|...|.|+.+|+++ ++++.+++.+...||..|+|+|.++++.++.|+++++.||||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHH-HHHcCCceeecC
Q 009496 189 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY-RIQQGVELIVGT 267 (533)
Q Consensus 189 ~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-~l~~~~~Iiv~T 267 (533)
|++|++.++.. ....++++||++||++|+.|+.+.++++....++++..+.|+........ ....+++|+|+|
T Consensus 83 ~~l~~l~~l~~------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 156 (245)
T 3dkp_A 83 FSIPILMQLKQ------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT 156 (245)
T ss_dssp HHHHHHHHHCS------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEEC
T ss_pred HHHHHHHHHhh------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEEC
Confidence 99999988753 22456789999999999999999999998888888877776543322211 123458999999
Q ss_pred hHHHHHHHHcC--CCCCCCeeEEEEeccchhhh---cchHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHHhhcCCeE
Q 009496 268 PGRLIDLLMKH--DIELDDIRMFVLDEVDCMLQ---RGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIV 340 (533)
Q Consensus 268 p~~l~~~l~~~--~~~l~~i~~vVvDEah~~~~---~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~ 340 (533)
|++|.+++... ...+.++++||+||||++.+ .+|...+..++..+ +..|+++||||+++++.++++.++.+++
T Consensus 157 p~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 157 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI 236 (245)
T ss_dssp HHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCE
Confidence 99999999876 46788999999999999998 57889999998776 4679999999999999999999999999
Q ss_pred EEEeCCC
Q 009496 341 VVSVGKP 347 (533)
Q Consensus 341 ~i~~~~~ 347 (533)
.+.++..
T Consensus 237 ~i~~~~~ 243 (245)
T 3dkp_A 237 SVSIGAR 243 (245)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9988764
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.3e-37 Score=334.95 Aligned_cols=316 Identities=15% Similarity=0.176 Sum_probs=192.9
Q ss_pred CCCCHHHHHHHHHHhC----C-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHH-HH
Q 009496 156 DMPTPVQMQAIPSALS----G-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE-EQ 229 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~----g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~-~~ 229 (533)
..|+|+|.++++.++. + ++++++++||||||++++. ++..+....+.......++++|||+||++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999999875 4 6699999999999998654 44444432221111225788999999999999998 66
Q ss_pred HHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc----CCCCCCCeeEEEEeccchhhhcchHHHH
Q 009496 230 AKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK----HDIELDDIRMFVLDEVDCMLQRGFRDQV 305 (533)
Q Consensus 230 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~----~~~~l~~i~~vVvDEah~~~~~~~~~~i 305 (533)
++.+. .....+.++. ...+.+|+|+||++|...... ..+....+++||+||||++...+ ...+
T Consensus 256 ~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 66553 2333333322 234589999999999887642 23456779999999999987543 3567
Q ss_pred HHHHHhCCCCcEEEecccCcHHHHHHHHh------------------hcCCeEEEEeCCCCC--C-----------Cccc
Q 009496 306 MQIFRAISLPQILMYSATISQEVEKMSSS------------------ISKDIVVVSVGKPNM--P-----------NKAV 354 (533)
Q Consensus 306 ~~i~~~~~~~q~i~~SAT~~~~~~~~~~~------------------~~~~~~~i~~~~~~~--~-----------~~~i 354 (533)
..++..++..++++||||+......-... ++..+....+..... . ...+
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 78888888899999999986422211111 122221111111000 0 0000
Q ss_pred eEEEEEecc-------hhhHHHHH----HHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc-------CCeEEEEcCCC
Q 009496 355 KQLAIWVES-------NKKKQKLF----DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-------GMKALSIHGEK 416 (533)
Q Consensus 355 ~~~~~~~~~-------~~k~~~l~----~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-------~~~~~~ih~~~ 416 (533)
......... ..+...+. +.+... ...+++||||+++.+|+.++..|.... +..+..+||++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000000000 11222222 223222 345789999999999999999997321 12377889987
Q ss_pred CHHHHHHHHHHHhcCCCc---EEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCC--ccEEEEEec
Q 009496 417 PMKERREIMRSFLVGEVP---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD--EGTAIVFVN 487 (533)
Q Consensus 417 ~~~~r~~~~~~f~~g~~~---VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~--~g~~~~l~~ 487 (533)
++ +|..+++.|++|+.+ |||+|+++++|+|+|++++||++++|.|...|+||+||+||.+. .+..+++++
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 64 799999999998766 88999999999999999999999999999999999999999875 333444444
No 54
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=284.64 Aligned_cols=215 Identities=35% Similarity=0.516 Sum_probs=185.6
Q ss_pred cCCCCCcccCccc-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccc
Q 009496 127 GDAVPAPILSFSS-CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 127 ~~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
+...|.|..+|++ +++++.++++|.+.||..|+|+|.++++.++.|++++++||||||||++|++|++.++.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~- 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR- 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh-
Confidence 3467899999999 79999999999999999999999999999999999999999999999999999998876432211
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCe
Q 009496 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
....++++||++||++|+.|+.+.++++. ..++++..++||.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357889999999999999999999986 34788999999988888778888899999999999999999888889999
Q ss_pred eEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEE
Q 009496 286 RMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVS 343 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~ 343 (533)
++||+||||++.+++|...+..++..+ +..|++++|||+|+.+++++..++.+|+.+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999998 4789999999999999999999999988765
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.6e-36 Score=313.20 Aligned_cols=268 Identities=12% Similarity=0.151 Sum_probs=191.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|++++++||||||||++|++|++..+.. .++++||++||++|+.|+++.++ +..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 37899999999999999999999977653 35689999999999999887664 3344443333111
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHh--CCCCcEEEecccCcHHH
Q 009496 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA--ISLPQILMYSATISQEV 328 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~--~~~~q~i~~SAT~~~~~ 328 (533)
.-..+.-+.++|.+.+...+.. ...+.++++||+||+|++ +.++..+...+... .+.+++++||||+++.+
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred -----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 1122455677899988776666 456889999999999997 43334333333333 25799999999998743
Q ss_pred HHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCe
Q 009496 329 EKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMK 408 (533)
Q Consensus 329 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~ 408 (533)
..+... ..++. .. ...... .+...+++.+.. .++++||||+++.+++.+++.|+ ..++.
T Consensus 139 ~~~~~~--~~~i~-~~-------------~~~~~~-~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~-~~~~~ 197 (431)
T 2v6i_A 139 EAFPPS--NSPII-DE-------------ETRIPD-KAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQ-KAGKK 197 (431)
T ss_dssp CSSCCC--SSCCE-EE-------------ECCCCS-SCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHH-HTTCC
T ss_pred hhhcCC--CCcee-ec-------------cccCCH-HHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHH-HcCCe
Confidence 221111 01111 00 000110 111222334433 25689999999999999999998 56999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccE-----------------EEEcCCCCCHhHHHHhhc
Q 009496 409 ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQ-----------------VIIFDMPNSIKEYVHQIG 471 (533)
Q Consensus 409 ~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~-----------------VI~~~~p~s~~~y~qriG 471 (533)
+..+||+ +|..+++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+|
T Consensus 198 v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~G 272 (431)
T 2v6i_A 198 VLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRG 272 (431)
T ss_dssp EEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHT
T ss_pred EEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhh
Confidence 9999997 578899999999999999999999999999 555 678889999999999999
Q ss_pred ccCCCCC-ccEEEEEe
Q 009496 472 RASQMGD-EGTAIVFV 486 (533)
Q Consensus 472 R~gR~g~-~g~~~~l~ 486 (533)
|+||.|. .|.++++.
T Consensus 273 R~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 273 RIGRNPEKLGDIYAYS 288 (431)
T ss_dssp TSSCCTTCCCCEEEEC
T ss_pred ccCCCCCCCCeEEEEc
Confidence 9999985 45556655
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=285.81 Aligned_cols=207 Identities=32% Similarity=0.559 Sum_probs=189.5
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCc
Q 009496 132 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 211 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 211 (533)
.+..+|+++++++.+.+.|...||..|+++|.++++.++.|++++++||||||||++|++|++..+... ..++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------~~~~ 112 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-------PQRL 112 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CCSS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-------CCCc
Confidence 356789999999999999999999999999999999999999999999999999999999999887652 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-CCCCCCCeeEEEE
Q 009496 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVL 290 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~i~~vVv 290 (533)
++||++||++|+.|+.+.++++....++++..++||.....+...+..+++|+|+||++|.+.+.+ ....+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 899999999999999999999988888999999999988888788888999999999999999886 4567899999999
Q ss_pred eccchhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeC
Q 009496 291 DEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 291 DEah~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 345 (533)
||||++.+++|...+..++..++ ..|+++||||++..+.+++..++.+|+.+.++
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999884 78999999999999999999999999887653
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.1e-35 Score=282.15 Aligned_cols=213 Identities=31% Similarity=0.538 Sum_probs=178.0
Q ss_pred ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccc
Q 009496 126 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 126 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
.....|.++.+|+++++++.+.++|...||..|+|+|.++++.++.|++++++||||||||++|++|++..+..
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------ 94 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------ 94 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 34456778899999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcC-CceeecChHHHHHHHHcCCCCCCC
Q 009496 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
...++++||++||++|+.|+.+.++++....+..+..+.||.....+...+..+ ++|+|+||++|.+++.+....+.+
T Consensus 95 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 95 -EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred -cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 134678999999999999999999999888888899999998877777777666 899999999999999988788899
Q ss_pred eeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeC
Q 009496 285 IRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 285 i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 345 (533)
+++||+||||++.+++|...+..++..+ +..|++++|||+++.+.+++..++.+++.+.++
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999988 468999999999999999999999999887653
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.7e-35 Score=278.47 Aligned_cols=211 Identities=29% Similarity=0.533 Sum_probs=182.0
Q ss_pred ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccc
Q 009496 126 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 126 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
.++..|.+..+|+++++++.+.+.|...||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+..
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 88 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ 88 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 35667788889999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCC
Q 009496 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
...++++||++||++|+.|+.+.++++.... ++++..+.||.....+...+ .+++|+|+||++|.+++......+.+
T Consensus 89 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 89 -ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred -cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccccc
Confidence 1346789999999999999999999998765 68888888888776655444 56999999999999999888888899
Q ss_pred eeEEEEeccchhhhcc-hHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEe
Q 009496 285 IRMFVLDEVDCMLQRG-FRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 285 i~~vVvDEah~~~~~~-~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 344 (533)
+++||+||||++.+++ |...+..++..++ ..|++++|||+++.+.+++..++.++..+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999987 9999999999985 7899999999999999999999998887754
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=276.78 Aligned_cols=228 Identities=32% Similarity=0.488 Sum_probs=195.6
Q ss_pred CHHHHHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 110 TIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
+.++++.+++.+.. ..+.++.+|+++++++.+.+.|...||..|+|+|.++++.++.|+++++++|||||||++|
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 5 ERESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cHhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 35566777776552 2245678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChH
Q 009496 190 LVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPG 269 (533)
Q Consensus 190 llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~ 269 (533)
++|++..+..... ....++++||++||++|+.|+.+.++++....++++..++||.....+...+ .+++|+|+||+
T Consensus 80 ~~~~l~~l~~~~~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~ 155 (236)
T 2pl3_A 80 LVPVLEALYRLQW---TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPG 155 (236)
T ss_dssp HHHHHHHHHHTTC---CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHH
T ss_pred HHHHHHHHHhhcc---cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHH
Confidence 9999988765321 1134678999999999999999999999888888999999998877665555 57999999999
Q ss_pred HHHHHHHcC-CCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCC
Q 009496 270 RLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 270 ~l~~~l~~~-~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 346 (533)
+|.+.+... ...+.++++||+||||++.+++|...+..++..++ ..|+++||||+++.+..+++.++.+|..+.++.
T Consensus 156 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 156 RLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999988765 46688999999999999999999999999999984 678999999999999999999999998887654
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-34 Score=269.94 Aligned_cols=201 Identities=33% Similarity=0.570 Sum_probs=183.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009496 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|+++++++.+++.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++.++.. ...++++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------~~~~~~~l 75 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-------KKDNIQAM 75 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-------TSCSCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-------cCCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999887542 13467899
Q ss_pred EEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009496 215 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
|++||++|+.|+.+.++++.... +.++..+.||.....+...+..+++|+|+||++|.+.+.+....+.++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 99999999999999999998776 68888899998888877777788999999999999999988888899999999999
Q ss_pred chhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEE
Q 009496 294 DCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVV 342 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i 342 (533)
|++.+.+|...+..++..++ ..|++++|||+|..+.+++..++.+|+.+
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999885 78999999999999999999999888765
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.3e-35 Score=317.12 Aligned_cols=286 Identities=18% Similarity=0.211 Sum_probs=207.3
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeE
Q 009496 162 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 162 Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
|.......+.+++++++||||||||+ +++..+.. .+.++|++|||+||.|+++.++.. +..+
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~----------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v 206 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS----------AKSGVYCGPLKLLAHEIFEKSNAA----GVPC 206 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH----------SSSEEEEESSHHHHHHHHHHHHHT----TCCE
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh----------cCCeEEEeCHHHHHHHHHHHHHhc----CCcE
Confidence 33344456789999999999999998 33333332 133699999999999999988775 5677
Q ss_pred EEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCC--CCcEEE
Q 009496 242 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS--LPQILM 319 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~--~~q~i~ 319 (533)
..+.|+..... ..-....+++++|++.+. ....+++||+||||++++.+++..+..++..++ ..++++
T Consensus 207 ~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~ 276 (677)
T 3rc3_A 207 DLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCG 276 (677)
T ss_dssp EEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEE
T ss_pred EEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEe
Confidence 88888755310 000012556677764431 246789999999999999999999998888874 568999
Q ss_pred ecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHH
Q 009496 320 YSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSN 399 (533)
Q Consensus 320 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~ 399 (533)
+|||.+ .+..+...... .+.+.......+.. ..... +..+. ......+|||+++.+++.++.
T Consensus 277 ~SAT~~-~i~~l~~~~~~-~~~v~~~~r~~~l~-------~~~~~------l~~l~---~~~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 277 EPAAID-LVMELMYTTGE-EVEVRDYKRLTPIS-------VLDHA------LESLD---NLRPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp CGGGHH-HHHHHHHHHTC-CEEEEECCCSSCEE-------ECSSC------CCSGG---GCCTTEEEECSSHHHHHHHHH
T ss_pred ccchHH-HHHHHHHhcCC-ceEEEEeeecchHH-------HHHHH------HHHHH---hcCCCCEEEEcCHHHHHHHHH
Confidence 999964 35555544433 33332221111110 00000 00111 113456999999999999999
Q ss_pred HHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCccEEEEcCC--------------CCCH
Q 009496 400 AISVTTGMKALSIHGEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDM--------------PNSI 463 (533)
Q Consensus 400 ~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~--g~~~VLvaT~~~~~Gldi~~v~~VI~~~~--------------p~s~ 463 (533)
.|. ..++.+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++||+++. |.|.
T Consensus 339 ~L~-~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 416 (677)
T 3rc3_A 339 QIE-IRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITT 416 (677)
T ss_dssp HHH-HTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCH
T ss_pred HHH-hcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCH
Confidence 998 678999999999999999999999999 889999999999999999 8999999998 8899
Q ss_pred hHHHHhhcccCCCCCc---cEEEEEecCcCHHHHHH
Q 009496 464 KEYVHQIGRASQMGDE---GTAIVFVNEENKNLFQE 496 (533)
Q Consensus 464 ~~y~qriGR~gR~g~~---g~~~~l~~~~~~~~~~~ 496 (533)
.+|+||+|||||.|.. |.|+.+... +...+..
T Consensus 417 ~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~ 451 (677)
T 3rc3_A 417 SQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKE 451 (677)
T ss_dssp HHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHH
Confidence 9999999999999964 666655444 4434433
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=287.88 Aligned_cols=214 Identities=31% Similarity=0.531 Sum_probs=185.1
Q ss_pred CceEecCCCCC---cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHH
Q 009496 122 EINVKGDAVPA---PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQ 196 (533)
Q Consensus 122 ~i~~~~~~~p~---~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~ 196 (533)
.+.+.+...+. ++.+|+++++++.+++.|...||..|+|+|.++||.++.| +|++++||||||||++|++|++.+
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 35566655544 4678999999999999999999999999999999999987 999999999999999999999987
Q ss_pred HHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHH
Q 009496 197 CANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL 275 (533)
Q Consensus 197 l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l 275 (533)
+.. ...++++||++||++||.|+++.++.+.... ++.+...+||....... ..+++|+|+||++|++++
T Consensus 156 l~~-------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 156 VEP-------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp CCT-------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHH
T ss_pred hhc-------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHH
Confidence 653 2456789999999999999999999998765 57788888876654321 356899999999999999
Q ss_pred Hc-CCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeC
Q 009496 276 MK-HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 345 (533)
Q Consensus 276 ~~-~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 345 (533)
.+ ..+.+.++++||+||||+|++ .+|...+..++..+ +..|+++||||++..+..++..++.+|+.+.+.
T Consensus 226 ~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 226 SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 76 556789999999999999998 78999999998887 568999999999999999999999999988764
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.4e-35 Score=276.54 Aligned_cols=207 Identities=26% Similarity=0.453 Sum_probs=183.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
|..+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+++++++|||||||++|++|++..+.. ...+++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------~~~~~~ 74 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------ERAEVQ 74 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-------TSCSCC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-------CcCCce
Confidence 4567999999999999999999999999999999999999999999999999999999999987643 134678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCC----CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 213 AMVLTPTRELCIQVEEQAKLLGKGL----PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
+||++||++|+.|+.+.++++.... ++.+..++||.....+...+..+++|+|+||++|.+++.+....+.++++|
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 9999999999999999999998766 678888888887665544445578999999999999999888888999999
Q ss_pred EEeccchhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCC
Q 009496 289 VLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 289 VvDEah~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 346 (533)
|+||||++.+++|...+..++..++ ..|++++|||+++++.++++.++.+|..+.+..
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999999999999984 689999999999999999999999998887654
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-34 Score=306.90 Aligned_cols=312 Identities=13% Similarity=0.161 Sum_probs=219.3
Q ss_pred CCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 156 DMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+|+|.++++.+. .++++++.++||+|||++++..+. .+.. .....++|||||+ .|+.||.++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~-------~~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKK-------ENELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHH-------TTCCSSEEEEECS-TTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHh-------cCCCCCEEEEccH-HHHHHHHHHHH
Confidence 378999999998773 678999999999999998655443 3332 1345679999995 68899999999
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHh
Q 009496 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~ 311 (533)
++... .++..+.|+... ......+|+|+||+.+..... +....+++||+||||++.+.+ ......+..
T Consensus 107 ~~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~ 174 (500)
T 1z63_A 107 KFAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 174 (500)
T ss_dssp HHCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred HHCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHh
Confidence 99753 455555554321 112357899999999965443 233478999999999997654 345566667
Q ss_pred CCCCcEEEecccCcH----HHHHHH---------------------------------HhhcCCeEEEEeCCCC----CC
Q 009496 312 ISLPQILMYSATISQ----EVEKMS---------------------------------SSISKDIVVVSVGKPN----MP 350 (533)
Q Consensus 312 ~~~~q~i~~SAT~~~----~~~~~~---------------------------------~~~~~~~~~i~~~~~~----~~ 350 (533)
++..+.+++|||+.. ++..+. ..++.. +.+...... ..
T Consensus 175 l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~-~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 175 LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISP-FILRRTKYDKAIIND 253 (500)
T ss_dssp SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTT-TEECCCTTCHHHHTT
T ss_pred hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhh-Heeeecccccchhhc
Confidence 777889999999832 111111 111111 111110000 01
Q ss_pred CccceEEEEEec---------------------------------------------------------chhhHHHHHHH
Q 009496 351 NKAVKQLAIWVE---------------------------------------------------------SNKKKQKLFDI 373 (533)
Q Consensus 351 ~~~i~~~~~~~~---------------------------------------------------------~~~k~~~l~~~ 373 (533)
.+.......+++ ...|...+.++
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 111111222221 12344455566
Q ss_pred HHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEeccccccCCCCCc
Q 009496 374 LMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVATGILGRGVELLGV 451 (533)
Q Consensus 374 l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~-VLvaT~~~~~Gldi~~v 451 (533)
+......+.++||||.+...++.++..|....++.+..+||++++.+|..+++.|++| ..+ +|++|+++++|+|++.+
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 6665556789999999999999999999855689999999999999999999999998 565 78999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhcccCCCCCccEE--EEEecCc
Q 009496 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 489 (533)
Q Consensus 452 ~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~--~~l~~~~ 489 (533)
++||+||+|+++..|.||+||++|.|+.+.+ +.|+...
T Consensus 414 ~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 414 NRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp SEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999987655 4455554
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.3e-34 Score=272.54 Aligned_cols=211 Identities=29% Similarity=0.568 Sum_probs=180.5
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCC
Q 009496 129 AVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQ 208 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 208 (533)
..|.++.+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ..
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------~~ 80 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------SV 80 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------TC
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-------cC
Confidence 45677889999999999999999999999999999999999999999999999999999999999987643 23
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
.++++||++||++|+.|+.+.++++....++++..+.||.....+...+. .++|+|+||++|.+.+.+....+.++++|
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 46789999999999999999999998888889999999887666554443 38999999999999999888888999999
Q ss_pred EEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCC
Q 009496 289 VLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP 347 (533)
Q Consensus 289 VvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 347 (533)
|+||||++.+++|...+..++..+ +..|++++|||+++.+..++..++.+++.+.+...
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999888 56789999999999999999999999988776543
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.8e-35 Score=332.74 Aligned_cols=332 Identities=16% Similarity=0.179 Sum_probs=227.5
Q ss_pred CCCCHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 156 DMPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~--g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------g~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--------GAAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--------SSCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--------CCCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 4789999999998885 4579999999999999987776655543 344579999999 9999999998665
Q ss_pred hcCCCCeEEEEEcCCchHHHHHH---HHcCCceeecChHHHHHHHHc-CCCCCCCeeEEEEeccchhhhcchH-HHHHHH
Q 009496 234 GKGLPFKTALVVGGDAMARQVYR---IQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVLDEVDCMLQRGFR-DQVMQI 308 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~i~~vVvDEah~~~~~~~~-~~i~~i 308 (533)
. ++.+..+.++ ........ .....+|+|+|++.+...... ..+...++++||+||||++.+.+.. ......
T Consensus 223 f---~l~v~v~~~~-~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 223 F---NLRFALFDDE-RYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp S---CCCCEECCHH-HHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred h---CCCEEEEccc-hhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 4 4444444332 22221111 112468999999988532111 1122457899999999999754422 111223
Q ss_pred HHhC--CCCcEEEecccCcH----HHHHHH----------------------------HhhcCC----------------
Q 009496 309 FRAI--SLPQILMYSATISQ----EVEKMS----------------------------SSISKD---------------- 338 (533)
Q Consensus 309 ~~~~--~~~q~i~~SAT~~~----~~~~~~----------------------------~~~~~~---------------- 338 (533)
+..+ ..++++++|||+.. ++..+. ..+...
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 3333 46689999999731 000000 000000
Q ss_pred ------------------------------------eEEEEeCC---CCCCCccceEEE---------------------
Q 009496 339 ------------------------------------IVVVSVGK---PNMPNKAVKQLA--------------------- 358 (533)
Q Consensus 339 ------------------------------------~~~i~~~~---~~~~~~~i~~~~--------------------- 358 (533)
.+.+.... ...+........
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 00000000 000000000000
Q ss_pred ------------------------EEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcC
Q 009496 359 ------------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG 414 (533)
Q Consensus 359 ------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~ 414 (533)
.+.....|...+.+++.. ..+.++||||+++..++.++..|....|+.+..+||
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG 536 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHE 536 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECT
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 123344567778888766 446799999999999999999998556999999999
Q ss_pred CCCHHHHHHHHHHHhcCC--CcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHH
Q 009496 415 EKPMKERREIMRSFLVGE--VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKN 492 (533)
Q Consensus 415 ~~~~~~r~~~~~~f~~g~--~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~ 492 (533)
+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.++++.......
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 999999999999999998 999999999999999999999999999999999999999999999998766665443333
Q ss_pred HHHHHHHHHH
Q 009496 493 LFQELVDILK 502 (533)
Q Consensus 493 ~~~~l~~~l~ 502 (533)
....+.+.+.
T Consensus 617 ~ee~i~~~~~ 626 (968)
T 3dmq_A 617 AQSVLVRWYH 626 (968)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444555553
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1e-33 Score=264.50 Aligned_cols=203 Identities=34% Similarity=0.579 Sum_probs=183.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEE
Q 009496 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.... ....++++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ----ERGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----CTTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----ccCCCCcEEE
Confidence 689999999999999999999999999999999999999999999999999999999998765311 1245788999
Q ss_pred EcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009496 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
++||++|+.|+.+.++++... +++..++||.....+...+..+++|+|+||+++.+++.+....+.++++||+||||+
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 999999999999999998764 678888999888777777888899999999999999998888899999999999999
Q ss_pred hhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEe
Q 009496 296 MLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSV 344 (533)
Q Consensus 296 ~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 344 (533)
+.+.+|...+..++..++ ..|++++|||+++.+..+++.++.+|..+.+
T Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999998884 6789999999999999999999999987764
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.9e-33 Score=292.84 Aligned_cols=318 Identities=19% Similarity=0.211 Sum_probs=242.2
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|..+.-.+..|+ |+.+.||+|||+++.+|++-..+. |..+.|++|++.||.|-.+|+..
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~----------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI----------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc----------CCceEEEeccHHHHHhHHHHHHH
Confidence 354 68999999999998888 999999999999999999866553 55699999999999999999999
Q ss_pred HhcCCCCeEEEEEcC--------------------------------------------------CchHHHHHHHHcCCc
Q 009496 233 LGKGLPFKTALVVGG--------------------------------------------------DAMARQVYRIQQGVE 262 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~ 262 (533)
+...+|+++.++... .+....... -.++
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCC
Confidence 999999999998872 111111111 1379
Q ss_pred eeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhh-c--------c-------hHHHHHHHHHhC-------
Q 009496 263 LIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ-R--------G-------FRDQVMQIFRAI------- 312 (533)
Q Consensus 263 Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~-~--------~-------~~~~i~~i~~~~------- 312 (533)
|+.+|..-| .++|+.+ ..-...+.+.||||+|.++= . | ....+..+...+
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999887 4555532 22246689999999998750 0 0 000000110000
Q ss_pred --------------------------------------------------C-----------------------------
Q 009496 313 --------------------------------------------------S----------------------------- 313 (533)
Q Consensus 313 --------------------------------------------------~----------------------------- 313 (533)
.
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 0
Q ss_pred --------------------------------CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceE-EEEE
Q 009496 314 --------------------------------LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQ-LAIW 360 (533)
Q Consensus 314 --------------------------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~ 360 (533)
-.++.+||+|...+...+...+..+.+.+. .+.+...+.+ ...+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IP---tnkp~~R~d~~d~vy 453 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIP---THKPMIRKDHDDLVF 453 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECC---CSSCCCCEECCCEEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEEC---CCCCcceeecCcEEE
Confidence 016889999998888888777766654442 2333333333 3456
Q ss_pred ecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 009496 361 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 440 (533)
Q Consensus 361 ~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~ 440 (533)
.....|...+++.+......+.|+||||+|+..++.++..|. ..|+++..+||+..+.++..+...++.| .|+|||+
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~-~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLK-KKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHH-TTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHH-HCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 777888888888887654456799999999999999999998 7899999999996666666566666655 6999999
Q ss_pred cccccCCCC--------CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009496 441 ILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 441 ~~~~Gldi~--------~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
+++||+||+ +..+||++++|.|...|+||+||+||.|.+|.+++|++.+|.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999998 567999999999999999999999999999999999998874
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=275.21 Aligned_cols=202 Identities=30% Similarity=0.522 Sum_probs=178.4
Q ss_pred cCcccCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009496 135 LSFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 135 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.+|++++ +++.+++.|...||..|+|+|.++++.++.+++++++||||||||++|++|++..+...+.. ...+++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~~ 128 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM---PRNGTG 128 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC---GGGCCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc---ccCCce
Confidence 3566666 99999999999999999999999999999999999999999999999999999988753211 124678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-CCCCCCeeEEEEe
Q 009496 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~i~~vVvD 291 (533)
+||++||++|+.|+.+.++++....+..+..+.||.....+...+..+++|+|+||++|.+++... ...+.++++||+|
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999999988889999999999988888888888999999999999988775 4678899999999
Q ss_pred ccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCe
Q 009496 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDI 339 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~ 339 (533)
|||++.+++|...+..++..+ +..|+++||||+++.+..+++.++.++
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999998 468999999999999999999887643
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-33 Score=265.94 Aligned_cols=209 Identities=30% Similarity=0.501 Sum_probs=180.5
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCC
Q 009496 128 DAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 128 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
...+....+|+++++++.+.+.|...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. .
T Consensus 7 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-------~ 79 (220)
T 1t6n_A 7 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------V 79 (220)
T ss_dssp -------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------C
T ss_pred CcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-------c
Confidence 334445567999999999999999999999999999999999999999999999999999999999877542 1
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCe
Q 009496 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
..++++||++||++|+.|+.+.++++.... ++++..+.||.....+...+.. .++|+|+||++|.+++.+....+.++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 235689999999999999999999998776 6888889999887777666655 46999999999999999888889999
Q ss_pred eEEEEeccchhhh-cchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEE
Q 009496 286 RMFVLDEVDCMLQ-RGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVS 343 (533)
Q Consensus 286 ~~vVvDEah~~~~-~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~ 343 (533)
++||+||||++.+ .+|...+..++..++ ..|++++|||+++.+.++++.++.+|+.+.
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999999987 578888988888874 789999999999999999999999987764
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-31 Score=294.50 Aligned_cols=319 Identities=13% Similarity=0.168 Sum_probs=227.4
Q ss_pred CCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 156 DMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..++|+|.+++..+. .++++|++.+||+|||+.++..+...+... .....+||||| ..|+.||.+++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------~~~~~~LIV~P-~sll~qW~~E~~ 306 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------RQNGPHIIVVP-LSTMPAWLDTFE 306 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-------SCCSCEEEECC-TTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-------CCCCCEEEEEC-chHHHHHHHHHH
Confidence 379999999998776 888999999999999998765554433221 23456999999 577899999999
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHH------------HcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 009496 232 LLGKGLPFKTALVVGGDAMARQVYRI------------QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l------------~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~ 299 (533)
++... +++....|+.......... ...++|+|+|++.+...... +....+++||+||||++.+.
T Consensus 307 ~~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 307 KWAPD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHSTT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS
T ss_pred HHCCC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc
Confidence 99753 5666666655444433322 12478999999999664332 12236889999999999653
Q ss_pred chHHHHHHHHHhCCCCcEEEecccCc----HHHHHHHHhhcCCe-----------------------------EEEEeCC
Q 009496 300 GFRDQVMQIFRAISLPQILMYSATIS----QEVEKMSSSISKDI-----------------------------VVVSVGK 346 (533)
Q Consensus 300 ~~~~~i~~i~~~~~~~q~i~~SAT~~----~~~~~~~~~~~~~~-----------------------------~~i~~~~ 346 (533)
.......+..+.....+++|||+- .++..+...+.... +.+.-..
T Consensus 383 --~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 383 --ESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp --SSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred --hhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 345556667777778899999982 22222222111111 0000000
Q ss_pred C--CCCCccceEEEEEe---------------------------------------------------------------
Q 009496 347 P--NMPNKAVKQLAIWV--------------------------------------------------------------- 361 (533)
Q Consensus 347 ~--~~~~~~i~~~~~~~--------------------------------------------------------------- 361 (533)
. ....+........+
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 0 00000001111111
Q ss_pred ------------cchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHh
Q 009496 362 ------------ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL 429 (533)
Q Consensus 362 ------------~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~ 429 (533)
....|...|.+++......+.++|||+.....++.|..+|. ..|+.+..+||+++..+|..+++.|+
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~-~~g~~~~~i~G~~~~~eR~~~i~~F~ 619 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS-IKGINFQRLDGTVPSAQRRISIDHFN 619 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH-HHTCCCEEESTTSCHHHHHHHHHTTS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 12335556667777766677899999999999999999998 77999999999999999999999999
Q ss_pred cCCC---cEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEE--EEEecCc
Q 009496 430 VGEV---PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 489 (533)
Q Consensus 430 ~g~~---~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~--~~l~~~~ 489 (533)
++.. .+|++|.+++.|||++.+++||+||+|+++..+.||+||++|.|+...+ +.|+...
T Consensus 620 ~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 620 SPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp STTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 8654 4899999999999999999999999999999999999999999986544 4455554
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=7.2e-32 Score=302.73 Aligned_cols=313 Identities=13% Similarity=0.100 Sum_probs=214.7
Q ss_pred CCCCHHHHHHHHHHhC--------------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009496 156 DMPTPVQMQAIPSALS--------------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~--------------g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
..|+|+|.+|++.++. +++++++++||||||+++ ++++..+.. .....++|||+|+++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-------~~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-------LDFIDKVFFVVDRKD 341 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-------CTTCCEEEEEECGGG
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-------cCCCceEEEEeCcHH
Confidence 3599999999999874 368999999999999997 566544321 123468999999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHH-cCCceeecChHHHHHHHHcCC--CCCCCeeEEEEeccchhhh
Q 009496 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~--~~l~~i~~vVvDEah~~~~ 298 (533)
|+.|+.+.++.+... .+.++.+.......+. .+.+|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 342 L~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999887643 1234555555555554 468999999999999876542 2356789999999999764
Q ss_pred cchHHHHHHHHHhCCCCcEEEecccCcHHH--------HHH-------------HHhhcCCeEEEEeCCCCCCCc-----
Q 009496 299 RGFRDQVMQIFRAISLPQILMYSATISQEV--------EKM-------------SSSISKDIVVVSVGKPNMPNK----- 352 (533)
Q Consensus 299 ~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~--------~~~-------------~~~~~~~~~~i~~~~~~~~~~----- 352 (533)
...+..+...++..++++||||+.... ..+ ......-++.+..........
T Consensus 416 ---~~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 ---GEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp ---HHHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC
T ss_pred ---hHHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc
Confidence 344567778888899999999996421 111 111111122211111000000
Q ss_pred -c------ceEEEEEecchhhHHHHHHHHHh----cc------CCCCCEEEEEcCcccHHHHHHHHHhhc----------
Q 009496 353 -A------VKQLAIWVESNKKKQKLFDILMS----KQ------HFTPPAVVYVGSRLGADLLSNAISVTT---------- 405 (533)
Q Consensus 353 -~------i~~~~~~~~~~~k~~~l~~~l~~----~~------~~~~~~lIF~~s~~~~~~l~~~l~~~~---------- 405 (533)
. +.+.. ......+...+...+.. .. ..+.++||||+|+..|..++..|....
T Consensus 493 ~d~~~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 493 TDEKKLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCHHHHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred ccHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 00000 00122233343332222 11 123579999999999999999997432
Q ss_pred -CCeE-EEEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCc
Q 009496 406 -GMKA-LSIHGE----------K----------PM-----------------------------KERREIMRSFLVGEVP 434 (533)
Q Consensus 406 -~~~~-~~ih~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~ 434 (533)
+..+ ..+||+ + ++ .+|..+++.|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 1444 455643 2 22 1488899999999999
Q ss_pred EEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCc----cEEEEEec
Q 009496 435 VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE----GTAIVFVN 487 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~----g~~~~l~~ 487 (533)
|||+|+++.+|+|+|.+ .|+++|.|.+...|+||+||++|.+.. |.++.|.+
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999999999 788999999999999999999998754 77777765
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.7e-30 Score=280.93 Aligned_cols=339 Identities=12% Similarity=0.141 Sum_probs=225.9
Q ss_pred CCCCHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009496 156 DMPTPVQMQAIPSAL---------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~---------~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..++|+|.+++..+. .++..|+..+||+|||+.++..+...+...+. ......++|||+|+ .|+.||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~---~~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD---CKPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT---SSCSCSCEEEEECH-HHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc---ccCCCCcEEEEecH-HHHHHH
Confidence 378999999999874 34678999999999999876666544332110 01123469999997 788999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCchHH--HHHHHHc------CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009496 227 EEQAKLLGKGLPFKTALVVGGDAMAR--QVYRIQQ------GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
.+++.++... .+.++.+.+|..... ....... ..+|+|+|++.+.... ..+....+++||+||||++.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCC
Confidence 9999999765 456677777654321 1122211 3689999999986543 233345788999999999975
Q ss_pred cchHHHHHHHHHhCCCCcEEEecccCcHH----H---------------HHHHHhhc-----------------------
Q 009496 299 RGFRDQVMQIFRAISLPQILMYSATISQE----V---------------EKMSSSIS----------------------- 336 (533)
Q Consensus 299 ~~~~~~i~~i~~~~~~~q~i~~SAT~~~~----~---------------~~~~~~~~----------------------- 336 (533)
.. ......+..+.....+++|||+-.. + ..+...+.
T Consensus 207 ~~--~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 207 SD--NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp TC--HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred hh--hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 43 3344555566788999999997211 0 00000000
Q ss_pred ------CCeEEEEeCCC--CCCCccceEEEEEec----------------------------------------------
Q 009496 337 ------KDIVVVSVGKP--NMPNKAVKQLAIWVE---------------------------------------------- 362 (533)
Q Consensus 337 ------~~~~~i~~~~~--~~~~~~i~~~~~~~~---------------------------------------------- 362 (533)
..++.+.-... ....+.......++.
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 00000000000 000000011111110
Q ss_pred --------------------------------chhhHHHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCCeE
Q 009496 363 --------------------------------SNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 363 --------------------------------~~~k~~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~ 409 (533)
...|...+..++.... ..+.++|||+.+...++.++..|. ..++.+
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~-~~g~~~ 443 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR-NRRYLY 443 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH-HHTCCE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH-HCCCCE
Confidence 1122223333333221 235799999999999999999998 789999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCc---EEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccE--EEE
Q 009496 410 LSIHGEKPMKERREIMRSFLVGEVP---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT--AIV 484 (533)
Q Consensus 410 ~~ih~~~~~~~r~~~~~~f~~g~~~---VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~--~~~ 484 (533)
..+||+++..+|..+++.|++|... +|++|+++++|||++++++||+||+|+++..|.|++||++|.|+... ++.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999999999999999998654 89999999999999999999999999999999999999999998754 445
Q ss_pred EecCc--CHHHHHHHHHHHHhc
Q 009496 485 FVNEE--NKNLFQELVDILKSS 504 (533)
Q Consensus 485 l~~~~--~~~~~~~l~~~l~~~ 504 (533)
|+... +...+........-.
T Consensus 524 lv~~~tiEe~i~~~~~~K~~l~ 545 (644)
T 1z3i_X 524 LLSTGTIEEKILQRQAHKKALS 545 (644)
T ss_dssp EEETTSHHHHHHHHHHHHHHTS
T ss_pred EEECCCHHHHHHHHHHHHHHHH
Confidence 56554 333444444444433
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=233.00 Aligned_cols=180 Identities=25% Similarity=0.461 Sum_probs=149.9
Q ss_pred hhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEc
Q 009496 334 SISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIH 413 (533)
Q Consensus 334 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih 413 (533)
.++.+|..+.++.......++.|.+..+....|...|.+++... ++++||||+++..++.++..|. ..++.+..+|
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~-~~g~~~~~lh 85 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLL-LKGVEAVAIH 85 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHH-HHTCCEEEEC
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHH-HcCCcEEEEe
Confidence 45677888888877778889999999999999999999988653 4589999999999999999998 6799999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc-CHH
Q 009496 414 GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKN 492 (533)
Q Consensus 414 ~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~ 492 (533)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976 788
Q ss_pred HHHHHHHHHHhcCCCCCHHHHhchh
Q 009496 493 LFQELVDILKSSGAGIPRELINSRY 517 (533)
Q Consensus 493 ~~~~l~~~l~~~~~~~p~~l~~~~~ 517 (533)
++..+.+.++..++.+|++|.+++.
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHccCcCCHHHHhhcC
Confidence 9999999999999999999988764
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.8e-28 Score=259.61 Aligned_cols=319 Identities=20% Similarity=0.213 Sum_probs=239.9
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+ .|+++|..+++.++.|+ ++.+.||+|||++|.+|++...+. +..++|++||++||.|.++++.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~----------G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT----------GKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT----------CSCCEEEESSHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHH
Confidence 3699 99999999999999998 999999999999999999755542 4569999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCC---CeeEEEEeccchhh-hcc
Q 009496 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELD---DIRMFVLDEVDCML-QRG 300 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~---~i~~vVvDEah~~~-~~~ 300 (533)
.+...+++++.+++||.+... .+...+++|+|+||++| .+++..+ .+.++ .+.++|+||+|+|+ +.+
T Consensus 142 ~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 142 PVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp HHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred HHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 999999999999999987433 44455799999999999 8888865 24577 89999999999987 211
Q ss_pred ---------------hHHHHHHHHHhCCC---------------------------------------------------
Q 009496 301 ---------------FRDQVMQIFRAISL--------------------------------------------------- 314 (533)
Q Consensus 301 ---------------~~~~i~~i~~~~~~--------------------------------------------------- 314 (533)
....+..++..++.
T Consensus 220 rtPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~ 299 (997)
T 2ipc_A 220 RTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENME 299 (997)
T ss_dssp TSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHH
T ss_pred CCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHH
Confidence 11112222222210
Q ss_pred -------------------------------------------------------------------------------C
Q 009496 315 -------------------------------------------------------------------------------P 315 (533)
Q Consensus 315 -------------------------------------------------------------------------------~ 315 (533)
.
T Consensus 300 l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~ 379 (997)
T 2ipc_A 300 LAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYE 379 (997)
T ss_dssp HHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhCh
Confidence 0
Q ss_pred cEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccH
Q 009496 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGA 394 (533)
Q Consensus 316 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~ 394 (533)
.+.+||+|...+...+...+..+.+.+.. +.+.... .....+.....|...+.+-+......+.|+||++.|.+..
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPT---n~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~S 456 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDVVVVPT---NRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKS 456 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCEEECCC---SSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCCEEEcCC---CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHH
Confidence 46677777777667777766666544432 2222211 2334456667788888877777666788999999999999
Q ss_pred HHHHHHHHh-----------------------------------------------------------------------
Q 009496 395 DLLSNAISV----------------------------------------------------------------------- 403 (533)
Q Consensus 395 ~~l~~~l~~----------------------------------------------------------------------- 403 (533)
+.|+..|..
T Consensus 457 E~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 536 (997)
T 2ipc_A 457 ERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHT 536 (997)
T ss_dssp HHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhh
Confidence 999999971
Q ss_pred ----hcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEeccccccCCCCCc-------------------c-------
Q 009496 404 ----TTGMKALSIHGEKPMKERREIMRSFLVG-EVPVIVATGILGRGVELLGV-------------------R------- 452 (533)
Q Consensus 404 ----~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~VLvaT~~~~~Gldi~~v-------------------~------- 452 (533)
..|++.-++++.....+-+ ++. ..| .-.|-|||++++||.||.-- .
T Consensus 537 ~~~~~~gI~H~VLNAK~he~EAe-IIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 537 LAVLRQGIPHQVLNAKHHAREAE-IVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHCCCCCEECSSSHHHHHH-HHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hHHHHcCCCeeeccccchHHHHH-HHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 3566666777664432322 221 245 44699999999999998632 1
Q ss_pred ------------------------------------------------EEEEcCCCCCHhHHHHhhcccCCCCCccEEEE
Q 009496 453 ------------------------------------------------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 453 ------------------------------------------------~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
+||-...+.|-..-.|-.||+||.|.+|..-.
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 78888899999999999999999999999988
Q ss_pred EecCcCH
Q 009496 485 FVNEENK 491 (533)
Q Consensus 485 l~~~~~~ 491 (533)
|++-+|.
T Consensus 694 ~LSLeDd 700 (997)
T 2ipc_A 694 YVSFDDD 700 (997)
T ss_dssp EEESSSH
T ss_pred EEECChH
Confidence 8886653
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=225.37 Aligned_cols=169 Identities=34% Similarity=0.641 Sum_probs=143.1
Q ss_pred CCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHH
Q 009496 348 NMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRS 427 (533)
Q Consensus 348 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~ 427 (533)
...+.++.|.+..++...|...|.+++.... .+.++||||+++..++.++..|. ..++.+..+||++++.+|..+++.
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~-~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLY-HEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHH-HTTCCEEEEC--------CHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHH-HcCCceEEEeCCCCHHHHHHHHHH
Confidence 4556789999999999999999999987743 45789999999999999999998 779999999999999999999999
Q ss_pred HhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCC
Q 009496 428 FLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG 507 (533)
Q Consensus 428 f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~ 507 (533)
|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.|.|++|+++.+...++.+.+.++..++.
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhchhc
Q 009496 508 IPRELINSRYT 518 (533)
Q Consensus 508 ~p~~l~~~~~~ 518 (533)
+|.+|.+++..
T Consensus 172 ~~~~l~~~a~~ 182 (185)
T 2jgn_A 172 VPSWLENMAYE 182 (185)
T ss_dssp CCHHHHHHHC-
T ss_pred CCHHHHHHHHH
Confidence 99999988753
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.3e-27 Score=257.76 Aligned_cols=176 Identities=18% Similarity=0.247 Sum_probs=136.9
Q ss_pred CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCccc
Q 009496 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~ 393 (533)
..|++++|||++...... ....+...........+. ........+...++..+......+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDPL----VRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCCe----EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 578999999998644222 112222222211111111 122333445566666666555456799999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCC-----CCCHhHHHH
Q 009496 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 468 (533)
Q Consensus 394 ~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~y~q 468 (533)
++.++..|. ..++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.|...|+|
T Consensus 452 ae~L~~~L~-~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 452 AEELTSFLV-EHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHH-HTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHH-hcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999998 78999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009496 469 QIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 469 riGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
|+||+||.+ .|.+++|++..+....+.+.+
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999984 899999999887765555444
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=4.8e-27 Score=255.12 Aligned_cols=175 Identities=20% Similarity=0.269 Sum_probs=137.0
Q ss_pred CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCccc
Q 009496 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~ 393 (533)
..|+++||||++...... ................+. +.......+...++..+......+.++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999998654222 122222222221111111 122333445566666666655556799999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCC-----CCCHhHHHH
Q 009496 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 468 (533)
Q Consensus 394 ~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~y~q 468 (533)
++.++..|. ..|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.|...|+|
T Consensus 458 ae~L~~~L~-~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 458 SEDLTDYLK-EIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHH-HTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHH-hcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999998 77999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred hhcccCCCCCccEEEEEecCcCHHHHHHHH
Q 009496 469 QIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 469 riGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 498 (533)
|+||+||. ..|.|++|+++.+..+...+.
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 789999999988765554443
No 79
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=1e-29 Score=170.31 Aligned_cols=54 Identities=63% Similarity=1.106 Sum_probs=51.1
Q ss_pred CCccccchhhhcccCCCCCeeeeecccccccccCcCCcccchHHhHHHHhhhhh
Q 009496 19 QSDVKEWSKDQREALPEEPKCVICGRYGEYICDETDDDVCSLECKQKLLCRVAN 72 (533)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 72 (533)
.++||+||++||||++|||+|++||||||||||+||+||||+|||+.++.++..
T Consensus 2 ~~~~~~~sk~Qr~p~pgePvCvvCGryGeYICd~Td~DVCSlECK~~~l~~~~~ 55 (60)
T 2yqp_A 2 SSGSSGFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKE 55 (60)
T ss_dssp CCCCCCSCCCCCCCCTTSCCCSSSSSCCSEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred CCcccchhhhhcCCCCCCceEEEecCccceeecCCCcchhhHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999977754
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.4e-26 Score=207.49 Aligned_cols=153 Identities=25% Similarity=0.477 Sum_probs=141.0
Q ss_pred CCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHH
Q 009496 349 MPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF 428 (533)
Q Consensus 349 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f 428 (533)
....++.|.+..+....|...|.+++... ..+++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELD-DLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 34556899999999999999999988764 34689999999999999999998 7799999999999999999999999
Q ss_pred hcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhc
Q 009496 429 LVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 429 ~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 504 (533)
++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++.+..++..+.+.+...
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876543
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=4.9e-27 Score=210.99 Aligned_cols=159 Identities=28% Similarity=0.509 Sum_probs=140.9
Q ss_pred cceEEEEEecchh-hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 009496 353 AVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG 431 (533)
Q Consensus 353 ~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g 431 (533)
++.|.+..++... |...|.+++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5778888888777 888888888764 35689999999999999999998 7799999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHH
Q 009496 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRE 511 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~ 511 (533)
+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.|.|++|+++.+...+..+.+.++...+.+|..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888766
Q ss_pred HHh
Q 009496 512 LIN 514 (533)
Q Consensus 512 l~~ 514 (533)
+.+
T Consensus 160 ~~~ 162 (165)
T 1fuk_A 160 IAT 162 (165)
T ss_dssp CTT
T ss_pred HHh
Confidence 543
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=8.1e-27 Score=210.85 Aligned_cols=162 Identities=27% Similarity=0.453 Sum_probs=143.3
Q ss_pred CccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 009496 351 NKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV 430 (533)
Q Consensus 351 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~ 430 (533)
...+.|.+..++...|...|.+++... ...++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLV-EQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 456889999999999999999998764 35689999999999999999998 779999999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc-CHHHHHHHHHHHHhcCCCCC
Q 009496 431 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSSGAGIP 509 (533)
Q Consensus 431 g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~~~~~~p 509 (533)
|..+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++. +...+..+.+.+......+|
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 99999999999999999999999999999999999999999999999999999999875 56788888888888888888
Q ss_pred HHHHhc
Q 009496 510 RELINS 515 (533)
Q Consensus 510 ~~l~~~ 515 (533)
.++-..
T Consensus 160 ~~~~~~ 165 (172)
T 1t5i_A 160 DEIDIS 165 (172)
T ss_dssp ------
T ss_pred hhhchh
Confidence 775443
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=208.13 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=137.9
Q ss_pred CCccceEEEEEecchh-hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHH
Q 009496 350 PNKAVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF 428 (533)
Q Consensus 350 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f 428 (533)
...++.|.+..++... |...|.+++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMI-QDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHH-TTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4567889998888766 888888888654 35689999999999999999998 7899999999999999999999999
Q ss_pred hcCCCcEEEEeccccccCCCCCccEEEEcCCC------CCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009496 429 LVGEVPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 429 ~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p------~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 502 (533)
++|.++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 999999999999999999999999999999988888888877
Q ss_pred hcCCCCC
Q 009496 503 SSGAGIP 509 (533)
Q Consensus 503 ~~~~~~p 509 (533)
.....+|
T Consensus 161 ~~~~~~~ 167 (175)
T 2rb4_A 161 SSIKQLN 167 (175)
T ss_dssp CCCEEEC
T ss_pred CcccccC
Confidence 6554444
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=4.4e-25 Score=206.43 Aligned_cols=151 Identities=21% Similarity=0.384 Sum_probs=135.1
Q ss_pred ceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 009496 354 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 354 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 433 (533)
+.+....+....|...|.+++.... ++++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|..
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLL-RLGHPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC--CSCEEEECSSHHHHHHHHHHHH-HHTCCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 3455566777888999998887543 5699999999999999999998 779999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCC
Q 009496 434 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG 507 (533)
Q Consensus 434 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~ 507 (533)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.++.....
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEE
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCee
Confidence 99999999999999999999999999999999999999999999999999999999999999988887764433
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.7e-24 Score=212.11 Aligned_cols=149 Identities=23% Similarity=0.401 Sum_probs=133.4
Q ss_pred ceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 009496 354 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 354 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 433 (533)
+.+.+..+....|...|.+++.... ++++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++|.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~-~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLL-RLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHH-TTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 5677888888899999999887654 6799999999999999999998 779999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcC
Q 009496 434 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 505 (533)
Q Consensus 434 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 505 (533)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999988888888776543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=202.41 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=122.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH-HHHHHHH
Q 009496 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ-VEEQAKL 232 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q-~~~~~~~ 232 (533)
+...|+|+|.++++.++.++++++.+|||+|||++|+++++..+...+. ...++++||++|+++|+.| +.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----TTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----ccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999999999999877654321 1346789999999999999 8888888
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC------CCCCCeeEEEEeccchhhhcchHHHHH
Q 009496 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD------IELDDIRMFVLDEVDCMLQRGFRDQVM 306 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~------~~l~~i~~vVvDEah~~~~~~~~~~i~ 306 (533)
+... ++++..+.|+.........+..+++|+|+||++|...+.... ..+.++++||+||||++.+.++...+.
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 8765 677888888765544444455568999999999999888743 557889999999999998766554443
Q ss_pred -HHHHhC--------------CCCcEEEeccc
Q 009496 307 -QIFRAI--------------SLPQILMYSAT 323 (533)
Q Consensus 307 -~i~~~~--------------~~~q~i~~SAT 323 (533)
.++... +.+++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 333222 67899999998
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=9.7e-26 Score=203.50 Aligned_cols=150 Identities=27% Similarity=0.447 Sum_probs=134.4
Q ss_pred cceEEEEEecc-hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 009496 353 AVKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG 431 (533)
Q Consensus 353 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g 431 (533)
++.|.+..++. ..|...|.+++... .+.++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLR-EAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 35666666766 67777787777653 35689999999999999999998 6789999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcC
Q 009496 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 505 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 505 (533)
+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++.+...+..+.+.+....
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999888888887765543
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2e-22 Score=214.68 Aligned_cols=302 Identities=17% Similarity=0.207 Sum_probs=168.2
Q ss_pred cCCCCCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009496 153 AGYDMPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~----i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------------TCEEEEEESCHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------------CCcEEEEcCCHHHHHHHHH
Confidence 367 899999998754 4588999999999999999999998642 4679999999999999988
Q ss_pred HHHHHhcCCCCeEEEEEcCCch--------H------------------------HHH---------------HHHHcCC
Q 009496 229 QAKLLGKGLPFKTALVVGGDAM--------A------------------------RQV---------------YRIQQGV 261 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gg~~~--------~------------------------~~~---------------~~l~~~~ 261 (533)
.+.++ ++++..+.|.... . ..+ .+...++
T Consensus 70 ~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGG----TCCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 87764 4444444432210 0 000 0112357
Q ss_pred ceeecChHHHHHHHHcCCC-------CCCCeeEEEEeccchhhhcc-----------hHHHHHHH---------------
Q 009496 262 ELIVGTPGRLIDLLMKHDI-------ELDDIRMFVLDEVDCMLQRG-----------FRDQVMQI--------------- 308 (533)
Q Consensus 262 ~Iiv~Tp~~l~~~l~~~~~-------~l~~i~~vVvDEah~~~~~~-----------~~~~i~~i--------------- 308 (533)
+|||+|+..|++-..++.+ .+....++||||||++.+.. +...+..+
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~ 225 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVK 225 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999999999875544221 24678899999999984310 00000000
Q ss_pred ---------HHhC-CC----------------------------------------------------------------
Q 009496 309 ---------FRAI-SL---------------------------------------------------------------- 314 (533)
Q Consensus 309 ---------~~~~-~~---------------------------------------------------------------- 314 (533)
+... ..
T Consensus 226 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P 305 (540)
T 2vl7_A 226 DYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVP 305 (540)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEeh
Confidence 0000 00
Q ss_pred ----------Cc----EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEE--ecc--hhh---HHHHHHH
Q 009496 315 ----------PQ----ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW--VES--NKK---KQKLFDI 373 (533)
Q Consensus 315 ----------~q----~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~~--~~k---~~~l~~~ 373 (533)
.. +|++|||+++.. .+..+. ....... . ...+.... ++. ... ...+.+.
T Consensus 306 ~~~~~~l~~~~~~~~~~IltSATL~p~~-----~~~~~f-~~~~~~~-~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~ 375 (540)
T 2vl7_A 306 SDVNQLIEDALNVKTFKVLMSGTLPESL-----TLTNSY-KIVVNES-Y---GRGEYYYCPNVTSELRKRNSNIPIYSIL 375 (540)
T ss_dssp SCHHHHHHHHTCCSSCEEEEESSCCTTC-----CCTTEE-EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCCeEEEcccCCCCc-----ccchhc-CCchhhe-e---cCCcceeccccCCCcccccCHHHHHHHH
Confidence 01 255555554410 000000 0000000 0 00011100 000 001 1334444
Q ss_pred HHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE--EeccccccCCCCC
Q 009496 374 LMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV--ATGILGRGVELLG 450 (533)
Q Consensus 374 l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLv--aT~~~~~Gldi~~ 450 (533)
+.... ...+.+|||++|...++.+++.+. . .+ ..+++.. .+|..+++.|+.+. .||+ +|+.+++|||+|+
T Consensus 376 l~~~~~~~~g~~lvff~S~~~~~~v~~~l~-~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~ 448 (540)
T 2vl7_A 376 LKRIYENSSKSVLVFFPSYEMLESVRIHLS-G--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFRE 448 (540)
T ss_dssp HHHHHHTCSSEEEEEESCHHHHHHHHTTCT-T--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC------------
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHhc-c--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCC
Confidence 43321 234579999999999999998886 2 33 4456654 46889999999864 6777 7899999999997
Q ss_pred ----ccEEEEcCCCCCH------------------------------hHHHHhhcccCCCCCccEEEEEecCc
Q 009496 451 ----VRQVIIFDMPNSI------------------------------KEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 451 ----v~~VI~~~~p~s~------------------------------~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
+++||++++|... ..+.|.+||+.|...+--+++++++.
T Consensus 449 ~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 449 KENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp ---CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred CcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 8999999988411 23468999999986554456666653
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=190.42 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=134.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHH
Q 009496 145 KLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
.+.+.+.......++++|.++++.+..|++++++|+||||||+++.++++..+.... ...+.++++++|+++|+.
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-----~~~~~~~l~~~p~~~la~ 123 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-----RAAECNIVVTQPRRISAV 123 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-----CGGGCEEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-----CCCceEEEEeccchHHHH
Confidence 333444444455678999999999999999999999999999999888887665421 123458999999999999
Q ss_pred HHHHHHHHHh-cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchh-hhcchH
Q 009496 225 QVEEQAKLLG-KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM-LQRGFR 302 (533)
Q Consensus 225 Q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~-~~~~~~ 302 (533)
|+.+.+.... ...+..+.......... ...+++|+|+||++|.+++.. .+.++++||+||||++ ++.+|.
T Consensus 124 q~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 124 SVAERVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHH
Confidence 9887776543 23344443322221110 013478999999999999876 4789999999999986 777777
Q ss_pred -HHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeE
Q 009496 303 -DQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIV 340 (533)
Q Consensus 303 -~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~ 340 (533)
..+..++...+..|+++||||++.+. +...+...++
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 56777777778899999999999765 6666655543
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=2.3e-20 Score=199.47 Aligned_cols=306 Identities=15% Similarity=0.151 Sum_probs=200.7
Q ss_pred CCCHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 157 MPTPVQMQAIPSA----LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i----~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+|+|.+++..+ ..|+++++.||||+|||++|++|++. .+++++|++||++|+.|+.++++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------------~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------------VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------------HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------------CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 7899999987754 48999999999999999999999986 156799999999999999999998
Q ss_pred HhcCCCCeEEEEEcCCch---------------------------------HHHH------------------HHHHcCC
Q 009496 233 LGKGLPFKTALVVGGDAM---------------------------------ARQV------------------YRIQQGV 261 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~ 261 (533)
+....++++..+.|+... .... .....++
T Consensus 70 l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 70 IREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred HhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 877777888877764321 1111 2223468
Q ss_pred ceeecChHHHHHHHHcCCCCC-CCeeEEEEeccchhhhcch---------------------------------------
Q 009496 262 ELIVGTPGRLIDLLMKHDIEL-DDIRMFVLDEVDCMLQRGF--------------------------------------- 301 (533)
Q Consensus 262 ~Iiv~Tp~~l~~~l~~~~~~l-~~i~~vVvDEah~~~~~~~--------------------------------------- 301 (533)
+|||+||+.|++...+..+.+ ....+|||||||++.+ ..
T Consensus 150 dIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp SEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred CEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988866554333 4678999999999865 20
Q ss_pred ----------------HHHHH----------------------------HHHH--------------hC-----------
Q 009496 302 ----------------RDQVM----------------------------QIFR--------------AI----------- 312 (533)
Q Consensus 302 ----------------~~~i~----------------------------~i~~--------------~~----------- 312 (533)
...+. ..+. .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 00000 0000 01
Q ss_pred ----CC-CcEEEecccCcHHHHHHHHhhcCC-eEE-----EEeCCCCCCCccceEEEEEecc----------hhhHHHHH
Q 009496 313 ----SL-PQILMYSATISQEVEKMSSSISKD-IVV-----VSVGKPNMPNKAVKQLAIWVES----------NKKKQKLF 371 (533)
Q Consensus 313 ----~~-~q~i~~SAT~~~~~~~~~~~~~~~-~~~-----i~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~ 371 (533)
.. ..+|++|||+.+ +..+...+..+ ... +..+.+. ..+...++.. ......+.
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-----~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-----SGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-----SCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-----CCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 12 577888999875 44444444333 221 1111111 1222222211 11234444
Q ss_pred HHHHhc-cCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe--ccccccCCC
Q 009496 372 DILMSK-QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT--GILGRGVEL 448 (533)
Q Consensus 372 ~~l~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT--~~~~~Gldi 448 (533)
+.+.+. ....+.+|||++|....+.+++. .+.++..=..+++ +..+++.|+.+.-.||++| +.+++|||+
T Consensus 383 ~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~ 455 (551)
T 3crv_A 383 DYLLKIYFQAKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIEL 455 (551)
T ss_dssp HHHHHHHHHCSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCC
T ss_pred HHHHHHHHhCCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccc
Confidence 444432 22345899999999998888762 3455443333445 4557778854445899998 689999999
Q ss_pred C-----CccEEEEcCCCCC------------------------------HhHHHHhhcccCCCCCccEEEEEecCc
Q 009496 449 L-----GVRQVIIFDMPNS------------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 449 ~-----~v~~VI~~~~p~s------------------------------~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
| .++.||+..+|.. +....|.+||+-|...+.-+++++++.
T Consensus 456 ~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 456 RNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 9 4788998776531 112358899999986665566777664
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.6e-22 Score=196.46 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=124.4
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009496 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..|+|+|.++++.++.+++.++++|||+|||+++++++...+.. ...++||++||++|+.||.+.++++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 38999999999999988889999999999999998887765542 234799999999999999999999976
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CC
Q 009496 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SL 314 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~ 314 (533)
..+..+..+.+|..... ....+.+|+|+||+.+... ....+.++++||+||||++.+ ..+..++..+ +.
T Consensus 183 ~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~ 252 (282)
T 1rif_A 183 FSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (282)
T ss_dssp CCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTC
T ss_pred cccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcC
Confidence 66677788888765432 1124589999999987433 223467899999999999874 4677777877 68
Q ss_pred CcEEEecccCcHHHH
Q 009496 315 PQILMYSATISQEVE 329 (533)
Q Consensus 315 ~q~i~~SAT~~~~~~ 329 (533)
.+++++|||+++...
T Consensus 253 ~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 253 MFKFGLSGSLRDGKA 267 (282)
T ss_dssp CEEEEECSSCCTTST
T ss_pred CeEEEEeCCCCCcch
Confidence 899999999986543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=3.2e-19 Score=169.52 Aligned_cols=139 Identities=22% Similarity=0.157 Sum_probs=111.1
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009496 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..|+++|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.||.+.++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------------CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 48999999999999999999999999999999987776531 456999999999999999888774
Q ss_pred CCCCe-EEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCC
Q 009496 236 GLPFK-TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 314 (533)
Q Consensus 236 ~~~~~-~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~ 314 (533)
+.. +..+.|+.. ...+|+|+||+.+....... ...+++||+||||++.+..+. .++..++.
T Consensus 157 --~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~~ 218 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSIA 218 (237)
T ss_dssp --CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCCC
T ss_pred --CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhccC
Confidence 566 666655543 24789999999987665531 245889999999999876544 56677788
Q ss_pred CcEEEecccCcHH
Q 009496 315 PQILMYSATISQE 327 (533)
Q Consensus 315 ~q~i~~SAT~~~~ 327 (533)
.+++++|||+++.
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 8999999999864
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=2.9e-18 Score=184.65 Aligned_cols=315 Identities=16% Similarity=0.192 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009496 157 MPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~----i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+|+|.|.+++.. +..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 689999998864 4589999999999999999999999988753 246899999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCchHH------------------HHH---------------------------------------
Q 009496 233 LGKGLPFKTALVVGGDAMAR------------------QVY--------------------------------------- 255 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~------------------~~~--------------------------------------- 255 (533)
+....+++++.+.|+....- ...
T Consensus 74 l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~ 153 (620)
T 4a15_A 74 LSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEE 153 (620)
T ss_dssp HHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHH
T ss_pred HhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHH
Confidence 87766777777666432100 000
Q ss_pred -----------------HHHcCCceeecChHHHHHHHHcCC----C-CCCCeeEEEEeccchhhhc--------------
Q 009496 256 -----------------RIQQGVELIVGTPGRLIDLLMKHD----I-ELDDIRMFVLDEVDCMLQR-------------- 299 (533)
Q Consensus 256 -----------------~l~~~~~Iiv~Tp~~l~~~l~~~~----~-~l~~i~~vVvDEah~~~~~-------------- 299 (533)
+....++|||+.+..|++...+.. . ....-.+|||||||.+.+.
T Consensus 154 l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l 233 (620)
T 4a15_A 154 FYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESL 233 (620)
T ss_dssp HHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHH
T ss_pred HHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHH
Confidence 011235699999988766543321 1 1234579999999987420
Q ss_pred ------------ch----------HHH----HH-----------------------------------H-------HHH-
Q 009496 300 ------------GF----------RDQ----VM-----------------------------------Q-------IFR- 310 (533)
Q Consensus 300 ------------~~----------~~~----i~-----------------------------------~-------i~~- 310 (533)
.+ ... +. . +..
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 313 (620)
T 4a15_A 234 NRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEY 313 (620)
T ss_dssp HHHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 00 000 00 0 000
Q ss_pred -------h--------------------CC-------------------------------CCcEEEecccCcHHHHHHH
Q 009496 311 -------A--------------------IS-------------------------------LPQILMYSATISQEVEKMS 332 (533)
Q Consensus 311 -------~--------------------~~-------------------------------~~q~i~~SAT~~~~~~~~~ 332 (533)
. .. ...+|++|||+.+ +..+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~ 392 (620)
T 4a15_A 314 VENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYS 392 (620)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHH
T ss_pred HHhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHH
Confidence 0 00 0134788999865 44444
Q ss_pred HhhcCCeEEEEeCCCCCCCccceEEEEEec---------chhhHHHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHH
Q 009496 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVE---------SNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAIS 402 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~ 402 (533)
..+..+...+..+.+ .+..+. ...... .......+.+.+.... ...+.+|||++|....+.+++.+.
T Consensus 393 ~~lGl~~~~~~~~sp-f~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 393 DITGFEIPFKKIGEI-FPPENR--YIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp HHHCCCCCEEECCCC-SCGGGE--EEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC
T ss_pred HHhCCCceeeecCCC-CCHHHe--EEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH
Confidence 443333333333322 112221 111111 1111233333333221 234579999999999999988876
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cccccCCCCC--ccEEEEcCCCCC----------------
Q 009496 403 VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG--ILGRGVELLG--VRQVIIFDMPNS---------------- 462 (533)
Q Consensus 403 ~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~--~~~~Gldi~~--v~~VI~~~~p~s---------------- 462 (533)
..+.+ ...+++..++..+++.|+ +.-.||++|. .+++|||+|+ .+.||+..+|..
T Consensus 470 -~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~ 544 (620)
T 4a15_A 470 -FEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERK 544 (620)
T ss_dssp -SCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHH
T ss_pred -hcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 33322 455566678999999999 8889999974 8999999996 679999887742
Q ss_pred -------------HhHHHHhhcccCCCCCccEEEEEecCc
Q 009496 463 -------------IKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 463 -------------~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
+....|.+||+-|...+--+++++++.
T Consensus 545 ~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 545 YGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp HSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred hCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 112368999999986665566666654
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1e-18 Score=168.89 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=101.4
Q ss_pred ecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 009496 361 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVA 438 (533)
Q Consensus 361 ~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~-VLva 438 (533)
.....|...+.+++......+.++||||.+...++.+...|....|+.+..+||++++.+|..+++.|++| .++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888876556789999999999999999999844699999999999999999999999999 777 6899
Q ss_pred eccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEE--EEEecCc
Q 009496 439 TGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 489 (533)
Q Consensus 439 T~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~--~~l~~~~ 489 (533)
|+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+ +.|+...
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987754 5556554
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.82 E-value=6.3e-09 Score=111.82 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchh--HHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009496 159 TPVQMQAIPSALSGKSLLVSANTGSGKT--ASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~vli~a~TGsGKT--~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
++.|.++++.++.++.+++.|++|+||| ++++++++..+. ...+.++++++||..++.++.+.+......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--------~~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--------DGERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--------hcCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999 445555554321 124568999999999999988877765543
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCc-eeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCC-C
Q 009496 237 LPFKTALVVGGDAMARQVYRIQQGVE-LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-L 314 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~-Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~-~ 314 (533)
+++..... .+.+.. ....+ ++-.+|+.. . +.........+++||||||+ |++ ...+..++..++ .
T Consensus 223 l~l~~~~~-~~~~~~------~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 223 LPLTDEQK-KRIPED------ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp SSCCSCCC-CSCSCC------CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCCCHHHH-hccchh------hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 33221000 000000 00111 222233221 1 11222223378999999999 443 456677777774 4
Q ss_pred CcEEEec
Q 009496 315 PQILMYS 321 (533)
Q Consensus 315 ~q~i~~S 321 (533)
.++|++.
T Consensus 290 ~~liLvG 296 (608)
T 1w36_D 290 ARVIFLG 296 (608)
T ss_dssp CEEEEEE
T ss_pred CEEEEEc
Confidence 5777764
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=1.2e-05 Score=83.55 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHcCCCCCCHHHHHHHHHHhC----C-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH
Q 009496 151 EAAGYDMPTPVQMQAIPSALS----G-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 151 ~~~g~~~p~~~Q~~~i~~i~~----g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
....|..+++-|.+++..++. + ..+++.|+.|||||.+ +..++..+.. .....+++++||...+..
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~--------~~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIS--------TGETGIILAAPTHAAKKI 89 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHH--------TTCCCEEEEESSHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHh--------cCCceEEEecCcHHHHHH
Confidence 334678899999999987753 2 3899999999999975 3444555543 122469999999888765
Q ss_pred HHH
Q 009496 226 VEE 228 (533)
Q Consensus 226 ~~~ 228 (533)
+.+
T Consensus 90 l~~ 92 (459)
T 3upu_A 90 LSK 92 (459)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.11 E-value=1.4e-05 Score=86.27 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+..+++.|.+++..++.+.-.+|.||+|+|||.+. ..++.++.. ..+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT--------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH--------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999998888999999999999863 344444442 24567999999999999887776543
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2e-05 Score=87.00 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+..+++.|.+|+..++.+.-++|.||+|+|||.+. ..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999998778899999999999864 3344444431 2467999999999999988877664
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.02 E-value=1e-05 Score=87.75 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 156 DMPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~-vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
..+++-|.+|+..+++.++ .||.||+|+|||.+. .-++.++.. .+.++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVK---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 3578999999999987664 689999999999864 344444443 3567999999999988887766543
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.01 E-value=2.2e-05 Score=83.49 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009496 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
..+++.|.+++..++.++.+++.|+.|+|||+.. ..++..+.. .+.++++++||...+..+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES---------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh---------cCCeEEEecCcHHHHHHhHh
Confidence 3678999999999999999999999999999753 333333332 35679999999988876554
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.99 E-value=2.8e-05 Score=85.73 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
...+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++.++.. ..+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHT--------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45689999999999998888899999999999863 444455443 24567999999999988887766543
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.90 E-value=0.00055 Score=74.16 Aligned_cols=71 Identities=25% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009496 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++. ..+..++|.|+.|||||.+..- .+.+++... .....++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~-ri~~l~~~~-----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVH-RIAWLMSVE-----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHH-HHHHHHHTS-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHH-HHHHHHHhC-----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 468899999997 3467899999999999986443 333444311 1123579999999999999988887764
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.71 E-value=7.3e-05 Score=72.39 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=87.7
Q ss_pred ecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 009496 361 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 440 (533)
Q Consensus 361 ~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~ 440 (533)
+..+.|...|-.++......+.++|||+......+.+..++. ..++....+.|.....++ .. .++...+.+.|.
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~-~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Llts 178 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLL-GNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSS 178 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHT-TSSCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHh-cCCCceEeCCCCchhhhh-hc----ccCCceEEEEEC
Confidence 456778888888887777778899999999999999999998 789999999998554322 11 245556655576
Q ss_pred cccccCC-----CCCccEEEEcCCCCCHhHH-HHhhcccCCCC--C--ccEEEEEecC
Q 009496 441 ILGRGVE-----LLGVRQVIIFDMPNSIKEY-VHQIGRASQMG--D--EGTAIVFVNE 488 (533)
Q Consensus 441 ~~~~Gld-----i~~v~~VI~~~~p~s~~~y-~qriGR~gR~g--~--~g~~~~l~~~ 488 (533)
..+-|+| +...+.||.||..+++..- +|.+-|+.|.| + .-.++-|+..
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 6566675 6789999999999988774 99888888873 2 3356666653
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.65 E-value=0.00064 Score=68.04 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++..|..+.+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--------SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--------CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 6899999999877655678999999999998766555544432 34567999999999998877777776543
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.21 E-value=0.0041 Score=66.40 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+|+|...+..+...+.+++..+-|+|||.+....++..+.. ..+..+++++|++..|..+...++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------~~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--------SSSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--------CCCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 6789999999877556779999999999998766555444433 23567999999999999988888887765
Q ss_pred CC--CeEEEE-EcCCchHHHHHHHHcCCceeec--ChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009496 237 LP--FKTALV-VGGDAMARQVYRIQQGVELIVG--TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 237 ~~--~~~~~~-~gg~~~~~~~~~l~~~~~Iiv~--Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
.+ ++.... ...... .+.+|..|.+. .|+.+... +.+++|+||+|.+-+
T Consensus 235 ~p~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lrG~---------~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 235 LPDFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVRGN---------SFAMIYIEDCAFIPN 287 (592)
T ss_dssp SCTTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHHHS---------CCSEEEEETGGGCTT
T ss_pred ChHhhccccccCCccEE-----EecCCCEEEEEeCCCCCccCC---------CcceEEEehhccCCc
Confidence 54 111000 111110 01234444432 34443211 356899999998754
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.14 E-value=0.0025 Score=56.58 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHh---------CCCcEEEEccCCCchhHHH
Q 009496 159 TPVQMQAIPSAL---------SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 159 ~~~Q~~~i~~i~---------~g~~vli~a~TGsGKT~~~ 189 (533)
.+.|.+++..+. .|+.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456776665543 4788999999999999843
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.93 E-value=0.0026 Score=64.47 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=61.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
-.++.|+.|+|||.... .+.. ....+|++||++++..+.+.+.+....
T Consensus 163 v~~I~G~aGsGKTt~I~-----~~~~----------~~~~lVlTpT~~aa~~l~~kl~~~~~~----------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL-----SRVN----------FEEDLILVPGRQAAEMIRRRANASGII----------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH-----HHCC----------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------------
T ss_pred EEEEEcCCCCCHHHHHH-----HHhc----------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------------
Confidence 36889999999998532 1111 134799999999998777655322100
Q ss_pred HHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecc
Q 009496 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 254 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SA 322 (533)
.....-+.|.++++- .......-..++||||||-.+ +.+ .+..++...+..+++++.-
T Consensus 211 -----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~~~~~vilvGD 268 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HTG---CVNFLVEMSLCDIAYVYGD 268 (446)
T ss_dssp -----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CHH---HHHHHHHHTTCSEEEEEEC
T ss_pred -----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CHH---HHHHHHHhCCCCEEEEecC
Confidence 112344667666532 112222234789999999844 333 3333444455566666543
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.72 E-value=0.0034 Score=56.13 Aligned_cols=40 Identities=28% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|+-.++.|++|+|||+.++-.+ ..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~---------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKL---------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHH---------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHH---------CCCeEEEEeecc
Confidence 35567899999999998644333 22221 345688888873
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.60 E-value=0.0029 Score=54.42 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999984
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.38 E-value=0.0075 Score=54.12 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccH
Q 009496 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
|+=.++.+++|||||+..+-.+.+ +. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r-~~---------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR-AK---------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH-HH---------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HH---------HCCCEEEEEEecc
Confidence 445688999999999865443333 32 2456799999873
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.32 E-value=0.015 Score=53.49 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=51.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.|++|+|||+..+-.+. ++. ..+.+++++.|...-- ....+...+++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~-r~~---------~~g~kVli~~~~~d~r-----~~~~i~srlG~~~--------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH-RLE---------YADVKYLVFKPKIDTR-----SIRNIQSRTGTSL--------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH-HHH---------HTTCCEEEEEECCCGG-----GCSSCCCCCCCSS---------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH-HHH---------hcCCEEEEEEeccCch-----HHHHHHHhcCCCc---------
Confidence 345578899999999986544333 332 2355688887764210 0001122222110
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009496 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
..+-+.+...++..+.... .-..+++||+||++.+.
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1223456666766665432 23457899999999653
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.18 E-value=0.011 Score=53.66 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009496 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
|+=.++.+++|||||+.++-.+.+.. ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~----------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ----------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----------HCCCEEEEEEeccC
Confidence 33357899999999987554444433 24667999998753
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.082 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=18.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
.+.++++.||+|+|||++.- .++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 45679999999999998643 333444
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.90 E-value=0.012 Score=63.80 Aligned_cols=71 Identities=23% Similarity=0.111 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+++-|.+++.. .+..++|.|+.|||||.+..-- +.+++... .....++|+|+.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~r-i~~ll~~~-----~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNK-IAHLIRGC-----GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHH-HHHHHHHH-----CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHH-HHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3678999999999999864433 33333311 11335699999999999999888877643
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.88 E-value=0.019 Score=62.76 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009496 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++.. .+..++|.|+.|||||.+... -+.+++... .....++|+|+.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~-ri~~ll~~~-----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTH-RIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHH-HHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999875 456899999999999987443 334444311 1123569999999999999888777653
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.75 E-value=0.019 Score=52.13 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
.|.=.++.+++|+|||+..+-. +.+... .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~---------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY---------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH---------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH---------cCCceEEEEeccC
Confidence 3455688999999999854433 333332 3566999999653
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.70 E-value=0.11 Score=46.56 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999853
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.69 E-value=0.073 Score=51.86 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999853
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.64 E-value=0.027 Score=51.74 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|+=.++.|++|||||+..+-.+.+.. ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~----------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ----------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH----------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH----------HCCCeEEEEeecC
Confidence 455568899999999987554444432 3567799998875
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.60 E-value=0.045 Score=53.74 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHH
Q 009496 158 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~~~Q~~~i~~i~----~g~---~vli~a~TGsGKT~~~l 190 (533)
.+|||.+++..+. +|+ .+++.||.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876654 444 38999999999998644
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.35 E-value=0.058 Score=54.68 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCeeEEEEeccchhh---hcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhc
Q 009496 283 DDIRMFVLDEVDCML---QRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSIS 336 (533)
Q Consensus 283 ~~i~~vVvDEah~~~---~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~ 336 (533)
..+++||+|++-++. +..+...+..+..... ..-++.++|+...+....+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 467899999998753 3345566666666553 34456678877655555555443
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.051 Score=54.10 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+..+++.||+|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 123
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.31 E-value=0.033 Score=59.33 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009496 157 MPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~--g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+ ..+. ..++|.+|+.+-+..+.+ +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~------------~~~~vtAP~~~a~~~l~~----~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA------------GRAIVTAPAKASTDVLAQ----FA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS------------SCEEEECSSCCSCHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH------------hCcEEECCCHHHHHHHHH----Hh
Confidence 689999999998885 3347889999999996544333 2221 126999999877654333 22
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCC
Q 009496 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 314 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~ 314 (533)
.. .|-+..|..+.. .+...++||||||=.+. .+.+..++..
T Consensus 238 ~~-------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~--- 278 (671)
T 2zpa_A 238 GE-------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR--- 278 (671)
T ss_dssp GG-------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT---
T ss_pred hC-------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh---
Confidence 10 144557766431 23357899999998653 4555555543
Q ss_pred CcEEEecccC
Q 009496 315 PQILMYSATI 324 (533)
Q Consensus 315 ~q~i~~SAT~ 324 (533)
...++||.|+
T Consensus 279 ~~~v~~~tTv 288 (671)
T 2zpa_A 279 FPRTLLTTTV 288 (671)
T ss_dssp SSEEEEEEEB
T ss_pred CCeEEEEecC
Confidence 2346666664
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.24 E-value=0.14 Score=52.30 Aligned_cols=43 Identities=21% Similarity=0.500 Sum_probs=24.7
Q ss_pred CeeEEEEeccchhhhc-chHHHHHHHHHhC--CCCcEEEecccCcH
Q 009496 284 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQ 326 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~-~~~~~i~~i~~~~--~~~q~i~~SAT~~~ 326 (533)
..++|++||+|.+... .....+..++..+ ...++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 4568999999998753 2334444555443 23455554443333
No 125
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.22 E-value=0.028 Score=65.24 Aligned_cols=71 Identities=27% Similarity=0.252 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+.... ..-...++|++++|+..+..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~----~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE----NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS----SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC----CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6789999999764 889999999999999875544444443210 0113357999999999999988877663
No 126
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.10 E-value=0.071 Score=53.09 Aligned_cols=18 Identities=39% Similarity=0.207 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456999999999999853
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.05 E-value=0.32 Score=43.65 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
..-.+||+||+|.+... ....+..++......-.+.+++.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987543 34455555655443333343433
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.97 E-value=0.049 Score=48.64 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+=.++.+++|||||+- ++-++.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH---------cCCeEEEEccc
Confidence 455678899999999964 3333333322 24669999887
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.88 E-value=0.23 Score=46.90 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.59 E-value=0.11 Score=51.84 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999853
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.55 E-value=0.19 Score=44.00 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+++.|++|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999853
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.50 E-value=0.18 Score=47.95 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHH-HHHHHH--HhCCCcEEEEccCCCchhHHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQ-MQAIPS--ALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~~i~~--i~~g~~vli~a~TGsGKT~~~ 189 (533)
|-..|+++.-.+...+.+...=. .+.+ .+.+.. +...+.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777666666665543210 0000 111111 124577999999999999853
No 133
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.42 E-value=0.091 Score=51.11 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCC-CCcEEEec
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYS 321 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~-~~q~i~~S 321 (533)
...++||+||+|.+........+..++...+ ..++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999862223445555555543 34444433
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.25 E-value=0.083 Score=50.91 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346999999999999854
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.24 E-value=0.12 Score=45.19 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999854
No 136
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.20 E-value=0.047 Score=50.29 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.95 E-value=0.47 Score=46.22 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999854
No 138
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.90 E-value=0.15 Score=55.77 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=65.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCccEEEE
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVII 456 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI~ 456 (533)
+.+++|.++++.-|...++.+.+. .++.+..+||+++..+|..++..+.+|..+|+|+|. .+...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 568999999999888888777633 378999999999999999999999999999999997 4556788888888886
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.87 E-value=0.18 Score=49.51 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=25.4
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
.+.+++|+||+|. ++......+..++...+...++.++++
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 4678999999998 444455666777776644434444443
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.80 E-value=0.45 Score=46.14 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=29.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-----CCCcEEEEccCCCchhHHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~-----~g~~vli~a~TGsGKT~~~ 189 (533)
|-..|+++.-.+...+.|...=. .|. ..|.++ ..+.+|+.||+|+|||+.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44568887666666666653200 000 001111 2356999999999999854
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.47 Score=43.65 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.|.-+++.|++|+|||..++-.+. .+.. .+..++|+.-. +...++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~-~~~~---------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW-NGLK---------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH-HHHH---------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHh---------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 567789999999999985433333 2222 23457777643 23344544444
No 142
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.66 E-value=0.35 Score=43.11 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=68.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH-HHHHHHHHHHHHhcCCCCeEEEEEcCCc-
Q 009496 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE-LCIQVEEQAKLLGKGLPFKTALVVGGDA- 249 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~-L~~Q~~~~~~~~~~~~~~~~~~~~gg~~- 249 (533)
...+++..++|.|||.+++-.+++.+- .+.+++|+.-.+. .-..=...+..+ ++.....-.|-.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g----------~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~ 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG----------HGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTW 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH----------TTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEccccccc
Confidence 347899999999999998877776653 4677888843221 000000112222 222211111110
Q ss_pred ---h-HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc--hHHHHHHHHHhCCCCcE-EEecc
Q 009496 250 ---M-ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQI-LMYSA 322 (533)
Q Consensus 250 ---~-~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~--~~~~i~~i~~~~~~~q~-i~~SA 322 (533)
. ....... -..| ..... .+.-..+++||+||+-..+..+ -.+.+..++...+..+- |+.+-
T Consensus 94 ~~~~~~~~~~~a----------~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 94 ETQNREADTAAC----------MAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp CGGGHHHHHHHH----------HHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CCCCcHHHHHHH----------HHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 0 0000000 1111 21211 1223578999999997765544 23556666666555554 44444
Q ss_pred cCcHHHHHHHH
Q 009496 323 TISQEVEKMSS 333 (533)
Q Consensus 323 T~~~~~~~~~~ 333 (533)
-.|+++.+++.
T Consensus 162 ~ap~~l~e~AD 172 (196)
T 1g5t_A 162 GCHRDILDLAD 172 (196)
T ss_dssp SCCHHHHHHCS
T ss_pred CCcHHHHHhCc
Confidence 55666665543
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.63 E-value=0.17 Score=50.18 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999853
No 144
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.58 E-value=0.6 Score=47.28 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=30.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc--ccHHHHHHHHHHHHHHhcCCCCeEE
Q 009496 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTA 242 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~--Ptr~L~~Q~~~~~~~~~~~~~~~~~ 242 (533)
-+++.+++|+|||+...-.+ .++. ..+.+++++. |.|.-+ .++++.+....++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~---------~~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQ---------KRGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHH---------TTTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHH---------HCCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 47889999999998644332 2222 2344565555 444433 2344444444454443
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.44 E-value=0.38 Score=49.28 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||+.++- +...+.. ..+..++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~-ia~~~~~--------~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN-IAQNVAT--------KTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH-HHHHHHH--------HSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHHH--------hCCCcEEEEEC
Confidence 566789999999999985443 3333322 12345777764
No 146
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.34 E-value=0.38 Score=49.13 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=24.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++- +...+.. ..+..++|+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~-ia~~~a~--------~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALT-IAQNAAL--------KEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHH--------TTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH--------hCCCeEEEEEC
Confidence 456689999999999975443 3333332 12445777764
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.27 E-value=0.38 Score=46.38 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
....+||+||+|.+... ....+..++...+..-.+.++++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 45679999999988543 2344555555544333344444433
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.08 E-value=2.6 Score=37.93 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999753
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.62 E-value=0.57 Score=45.73 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
....+|++||+|.+... ....+..++...+....+.++++.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCc
Confidence 35689999999988643 234555566655433333334333
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.32 E-value=0.69 Score=44.51 Aligned_cols=42 Identities=5% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
...+++|+||+|.|.... ...+...++..+..-++.+.++-+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEECCh
Confidence 467899999999986433 344555566544444444444433
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.25 E-value=1.7 Score=42.63 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....+||+||+|.+... ....+...+...+..-++.++++
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEES
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 45679999999987543 23445555555444444444444
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.18 E-value=0.13 Score=50.24 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+..++.. .+..++|+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~---------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN---------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH---------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH---------cCCeEEEEeC
Confidence 55668999999999997543 33333332 2456788764
No 153
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.13 E-value=0.35 Score=50.42 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCeeEEEEeccchhhhcc--hHHHHHHHHHhCCCCcEEEecccC
Q 009496 283 DDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~--~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
..-.+||+||+|.+.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 345789999999986532 23455555555 345577777764
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.02 E-value=0.61 Score=42.33 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|.-+++.|++|+|||+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5677899999999999743
No 155
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.76 E-value=0.52 Score=47.08 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
..+.+|+.||+|+|||+.+
T Consensus 147 ~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999854
No 156
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.69 E-value=1.3 Score=42.14 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=16.7
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009496 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~ 189 (533)
..|.-+++.|++|+|||+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 36777899999999999843
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.51 E-value=0.13 Score=52.51 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
.++++.||+|+|||+.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.46 E-value=0.7 Score=44.35 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
++++.||+|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999854
No 159
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.24 E-value=1.3 Score=41.89 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.5
Q ss_pred HhCCCcEEEEccCCCchhHHHHH
Q 009496 169 ALSGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~~ll 191 (533)
+..|+-+++.|++|+|||+.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 44778899999999999985443
No 160
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.23 E-value=0.63 Score=46.70 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc----ccCCCCCcc
Q 009496 379 HFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG----RGVELLGVR 452 (533)
Q Consensus 379 ~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~----~Gldi~~v~ 452 (533)
..++++||.++++.-+..+++.++.. .++.+..+||+.+..++......+..|..+|+|+|.-.- .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 45678999999999999999998732 478999999999999999999999999999999997321 125556788
Q ss_pred EEEEcCC
Q 009496 453 QVIIFDM 459 (533)
Q Consensus 453 ~VI~~~~ 459 (533)
+||.-..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886443
No 161
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.16 E-value=0.7 Score=44.68 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=29.9
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|.-+++.|++|+|||..++- +..++.. .+..++|++-- +-..|+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~-ia~~~a~---------~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALK-QAKNMSD---------NDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH-HHHHHHT---------TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHH---------cCCeEEEEECC-CCHHHHHHHHH
Confidence 3566789999999999975433 3333332 23568887743 22344444333
No 162
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.06 E-value=1.8 Score=38.81 Aligned_cols=21 Identities=33% Similarity=0.211 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ll 191 (533)
.|.-+++.|++|+|||+.+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999985443
No 163
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=90.87 E-value=0.19 Score=34.67 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=16.2
Q ss_pred cccCCCCCeeeeeccccccc
Q 009496 30 REALPEEPKCVICGRYGEYI 49 (533)
Q Consensus 30 ~~~~~~~~~c~~c~~~~~~~ 49 (533)
+-+......|+.||..|||.
T Consensus 17 ~~~~~~~~~C~~Cge~GH~a 36 (56)
T 1u6p_A 17 RRSQLDRDQCAYCKEKGHWA 36 (56)
T ss_dssp CSTTCCTTBCSSSCCBSSCG
T ss_pred CCCCCCCCcceeCCCCCccc
Confidence 44556678899999999977
No 164
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=90.70 E-value=0.099 Score=33.34 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=16.3
Q ss_pred cccCCCCCeeeeeccccccc
Q 009496 30 REALPEEPKCVICGRYGEYI 49 (533)
Q Consensus 30 ~~~~~~~~~c~~c~~~~~~~ 49 (533)
|-+......|+.||++|||+
T Consensus 4 r~~~~~~~~C~~Cgk~GH~a 23 (40)
T 1a6b_B 4 RRSQLDRDQCAYCKEKGHWA 23 (40)
T ss_dssp TCCSCCSSSCSSSCCTTCCT
T ss_pred ccCCCCCCeeeECCCCCcch
Confidence 44556678999999999977
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.49 E-value=1.5 Score=42.80 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009496 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
...+++|+||+|.|... ....+..+++..+....+.+.++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEecC
Confidence 35789999999988643 344556666665443334444443
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.10 E-value=0.67 Score=46.34 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.1
Q ss_pred CcEEE--EccCCCchhHHH
Q 009496 173 KSLLV--SANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli--~a~TGsGKT~~~ 189 (533)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999853
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.85 E-value=0.45 Score=45.94 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999853
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.72 E-value=3.9 Score=39.43 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.++.++|.|+.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 367899999999999974
No 169
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.25 E-value=3.6 Score=36.27 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=53.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HH-cCCceeecChHHHHHHHHcCCCCCCCe
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
++++||.++++.-+..+.+.++.. ++.+..+.|+.+....... .. ....|+|+| +.+. ..+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 456999999999999988888765 5778888888776554332 23 348899999 4444 35678888
Q ss_pred eEEEEec
Q 009496 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8888744
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.14 E-value=0.31 Score=41.00 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.6
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 009496 168 SALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 168 ~i~~g~~vli~a~TGsGKT~~ 188 (533)
....+.++++.|++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999974
No 171
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.89 E-value=1.3 Score=50.96 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCccEEE
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-+...++.+.+. .+..+..+++..+..++..+++.+..|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999888888877643 357889999999999999999999999999999995 556668888888877
Q ss_pred E
Q 009496 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 6
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.88 E-value=0.31 Score=41.06 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=17.3
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009496 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~ 189 (533)
..+.++++.|++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46788999999999999854
No 173
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.86 E-value=0.84 Score=41.78 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ll 191 (533)
.|.-+++.+|+|+|||+.+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 567789999999999985443
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.82 E-value=6.3 Score=37.97 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=30.4
Q ss_pred ChHHHHHHHHcCCCCCCCeeEEEEeccchhhh---cchHHHHHHHHHhCCCCcEEEeccc
Q 009496 267 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ---RGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 267 Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~---~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
+...+...+..... .--+||+||+|.+.+ ..+...+..+....+...+|+ +++
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~g~ 178 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIM-SGS 178 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEE-EES
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEE-EcC
Confidence 34555555554321 234899999999864 345666666666544444444 444
No 175
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.81 E-value=2.2 Score=43.92 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
..+.+|+.||+|+|||+.+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999854
No 176
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.49 E-value=0.9 Score=46.26 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-+++.|++|+|||..++ -+..++.. .+.+++|++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal-~ia~~~a~---------~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFAL-KQAKNMSD---------NDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHH-HHHHHHHH---------TTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHH-HHHHHHHH---------cCCEEEEEEC
Confidence 55668999999999997544 33333332 1456888864
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.36 E-value=0.31 Score=45.79 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.8
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009496 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~ 188 (533)
+..|.-+++.||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677789999999999984
No 178
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.36 E-value=0.68 Score=44.38 Aligned_cols=16 Identities=50% Similarity=0.663 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999753
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.84 E-value=8 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
++-+++.+++|+|||+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 3457889999999998543
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.97 E-value=3 Score=40.34 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=31.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH-HHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL-CIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L-~~Q~~~~~~~~ 233 (533)
.|.-+++.|++|+|||..++..+.. +.... ...+.+.+++|+.-...+ ..++...++++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~-~~~~~---~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN-VQLPP---EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-TTSCG---GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH-Hhccc---ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999854433322 21100 001124568887754322 34444444443
No 181
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.79 E-value=2.8 Score=37.63 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 450 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~ 450 (533)
..++||.++++.-+..+++.+++.. +..+..++|+.+..++.. .+..+..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3489999999999998888776332 788999999998665543 345577899999962 1 23467778
Q ss_pred ccEEEEcC
Q 009496 451 VRQVIIFD 458 (533)
Q Consensus 451 v~~VI~~~ 458 (533)
+++||.-.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88888643
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.76 E-value=0.96 Score=45.57 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=18.5
Q ss_pred HHHHHHHHh--CCCcEEEEccCCCchhHH
Q 009496 162 QMQAIPSAL--SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 162 Q~~~i~~i~--~g~~vli~a~TGsGKT~~ 188 (533)
+..++..++ .+.-+++.||||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 334444443 344578999999999984
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.64 E-value=0.85 Score=41.95 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=17.3
Q ss_pred hCCCcEEEEccCCCchhHHHH
Q 009496 170 LSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~l 190 (533)
..|.-+.+.||+|||||+.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 367789999999999998543
No 184
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.52 E-value=1.6 Score=49.88 Aligned_cols=81 Identities=9% Similarity=0.071 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHHh--hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccc---cCCCCCcc
Q 009496 379 HFTPPAVVYVGSRLGADLLSNAISV--TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGR---GVELLGVR 452 (533)
Q Consensus 379 ~~~~~~lIF~~s~~~~~~l~~~l~~--~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~~~---Gldi~~v~ 452 (533)
..+.++||.++++.-|..+++.+.. ..++.+..+||+++..+|...++.+..|..+|+|+|.- +.. -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4567899999999999999999984 24678999999999988999999999999999999972 211 14556788
Q ss_pred EEEEcCC
Q 009496 453 QVIIFDM 459 (533)
Q Consensus 453 ~VI~~~~ 459 (533)
+||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8887443
No 185
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.48 E-value=4.6 Score=38.83 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ll 191 (533)
.|.-+++.|++|+|||..++-
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456689999999999985443
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.44 E-value=0.73 Score=48.29 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+..+++.+|+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999843
No 187
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.01 E-value=4.8 Score=41.24 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=16.3
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
-+.+.|++|+|||+. +-.+..++
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCcccHHHH--HHHHHHHh
Confidence 478899999999984 33444443
No 188
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.91 E-value=2.2 Score=43.85 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+....+.+-||||||++..- ++. ..+..+|||+|+...|.|+++.++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~------------~~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAE------------RHAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHH------------HSSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHH------------HhCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456789999999999974321 111 1133499999999999999999998864
No 189
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=85.77 E-value=4.1 Score=31.62 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=40.0
Q ss_pred EEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009496 385 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 435 (533)
Q Consensus 385 lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~V 435 (533)
+||....+....+...++ ..|..+..++++.....|.+-++.|.....+|
T Consensus 6 vvfssdpeilkeivreik-rqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIK-RQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEESCHHHHHHHHHHHH-HTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEecCCHHHHHHHHHHHH-hCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 566666666677777776 78999999999999999999999998755444
No 190
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=85.06 E-value=4.2 Score=34.64 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=53.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCCe
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
+.++||.++++..+..+.+.+... ++.+..++|+.+....... ... ...|+|+| +.+ ...+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hcCCchhcC
Confidence 456999999999999888877765 6788888888765554332 333 47899999 333 345678888
Q ss_pred eEEEEecc
Q 009496 286 RMFVLDEV 293 (533)
Q Consensus 286 ~~vVvDEa 293 (533)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88887543
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.00 E-value=1.1 Score=44.13 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.+..+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999984
No 192
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.97 E-value=0.36 Score=48.82 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=34.8
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
.|-.+|++.+--+...+.|... .+..|.-++...+ -..+.+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 4667899998777777776542 1222222222211 1346799999999999985
No 193
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=84.83 E-value=5.3 Score=34.42 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++..+..+...+... ++.+..++|+.+....... ... ...|+|+| +.+ ...+++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVC-ARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSC-CTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cch-hcCCCccc
Confidence 4568999999999998877776653 6788888888776554332 333 47899999 222 34567889
Q ss_pred eeEEEEec
Q 009496 285 IRMFVLDE 292 (533)
Q Consensus 285 i~~vVvDE 292 (533)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99988543
No 194
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.42 E-value=4.6 Score=41.94 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=61.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCCccEE
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLGVRQV 454 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~v~~V 454 (533)
.+.+||.++++.-+......|. ..+..+..+|++.+..++..+...+..|..+||++|.- + ...++..++.+|
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQ-ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3579999999999999999998 78999999999999999999999999999999999963 1 122333556666
Q ss_pred EE
Q 009496 455 II 456 (533)
Q Consensus 455 I~ 456 (533)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 195
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.23 E-value=1 Score=45.64 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
...++++.|+||||||.. +..++..++. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~---------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL---------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH---------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH---------CCCcEEEEeCCCchhH
Confidence 457899999999999986 3444444443 2456888888888754
No 196
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.98 E-value=1.6 Score=42.04 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.| -+++.+|+|+|||..++ .++..+.. ...+.+++|+..-..+
T Consensus 28 ~G-iteI~G~pGsGKTtL~L-q~~~~~~~-------~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGL-TMVSSYMR-------QYPDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHH-HHHHHHHH-------HCTTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHH-HHHHHHHh-------cCCCceEEEEeccchh
Confidence 35 58999999999998544 33333332 0235678898876555
No 197
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.88 E-value=0.33 Score=33.36 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=13.0
Q ss_pred CCCeeeeeccccccc
Q 009496 35 EEPKCVICGRYGEYI 49 (533)
Q Consensus 35 ~~~~c~~c~~~~~~~ 49 (533)
..-.|+.||..||||
T Consensus 6 ~~~~C~kCGk~GH~~ 20 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYI 20 (55)
T ss_dssp SSCCCTTTCCTTSCG
T ss_pred CCCccccCCCcCccc
Confidence 345799999999999
No 198
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.77 E-value=1.6 Score=45.09 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=25.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-++|.|++|+|||..+ +-++.++.. ..+.+++|+.-
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~--------~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGT--------AMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTT--------TSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHH--------hcCCcEEEEec
Confidence 5667899999999999754 333333332 12455777764
No 199
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.68 E-value=5.4 Score=38.59 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=27.4
Q ss_pred eeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhh
Q 009496 285 IRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 285 i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~ 335 (533)
.+++++|.+.+... ......+..+...+ ++..++.+.++...+....+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678888775431 22334444443333 45556667776665555554443
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.50 E-value=1.5 Score=39.52 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009496 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
-+.-|..++..+..|.-+.+.+|.|||||+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3455778888888999999999999999983
No 201
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.41 E-value=3.5 Score=41.18 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.|.-+.|.++.|+|||+.+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 45668999999999998543
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.15 E-value=8.4 Score=37.56 Aligned_cols=20 Identities=30% Similarity=0.145 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.|+-+.+.+|.|||||..+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668999999999998543
No 203
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=82.53 E-value=5.2 Score=34.06 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+...++.. ++.+..++|+.+....... ... ...|+|+| +.+ ...+++..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G~d~~~ 98 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-ARGIDVQQ 98 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hcCCCccc
Confidence 3467999999999999888877664 5678888888775554332 233 47899999 223 34567888
Q ss_pred eeEEEEecc
Q 009496 285 IRMFVLDEV 293 (533)
Q Consensus 285 i~~vVvDEa 293 (533)
+++||.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888887543
No 204
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.51 E-value=5.1 Score=36.56 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-ccCCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG-RGVELLG 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~-~Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.. ..++.+..++|+.+..++...+. ...+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988888776652 45788999999998776655443 2478999996 222 3457788
Q ss_pred ccEEEEcC
Q 009496 451 VRQVIIFD 458 (533)
Q Consensus 451 v~~VI~~~ 458 (533)
+++||.-.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88888643
No 205
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=82.41 E-value=5.4 Score=35.73 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCCe
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
+.++||.++++.-+..+.+.+... ++.+..++|+.+...+... ... ..+|+|+| +.+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccC
Confidence 457999999999999888887765 6788889998776654433 333 37899999 333 345678889
Q ss_pred eEEEE
Q 009496 286 RMFVL 290 (533)
Q Consensus 286 ~~vVv 290 (533)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98885
No 206
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=82.31 E-value=2.3 Score=37.25 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHH
Q 009496 159 TPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 159 ~~~Q~~~i~~i~~--g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
.+-|..++..++. .+-.++.+.-|++||...+.-++.. .+ ..|..+.+|+|+..-..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~-a~--------~~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMM-AR--------EQGREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHH-HH--------HTTCCEEEECSTTHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHH-HH--------hcCeEEEEEcCchHHHH
Confidence 3568888888873 3456789999999998744333322 22 45788999999976644
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.07 E-value=3.2 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
..++++.||+|+|||..+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4579999999999998543
No 208
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=81.57 E-value=2.3 Score=40.85 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
++++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 209
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.09 E-value=1.5 Score=45.53 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=25.6
Q ss_pred HHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHH
Q 009496 148 QNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 148 ~~l~~~g~~~p~~~Q~~~i~~-i~~g~~vli~a~TGsGKT~~ 188 (533)
..|...|. +++.+...+.. +..|..+++.||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444442 33444444443 34788999999999999984
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.02 E-value=1.1 Score=44.27 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009496 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~ 188 (533)
+..|..+++.||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44889999999999999983
No 211
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=80.96 E-value=0.27 Score=28.05 Aligned_cols=13 Identities=38% Similarity=0.994 Sum_probs=11.2
Q ss_pred Ceeeeeccccccc
Q 009496 37 PKCVICGRYGEYI 49 (533)
Q Consensus 37 ~~c~~c~~~~~~~ 49 (533)
..|+.||+.||+.
T Consensus 3 ~~Cf~CG~~GH~a 15 (26)
T 1dsq_A 3 PVCFSCGKTGHIK 15 (26)
T ss_dssp CBCTTTCCBSSCT
T ss_pred CeeEeCCCCCccc
Confidence 4699999999955
No 212
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.95 E-value=0.96 Score=54.22 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.++.+++.+|+|+|||..+...+.... ..+.+++|+..-..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~----------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ----------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH----------TTTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----------HcCCcEEEEEccccc
Confidence 378999999999999986554444332 235678888765433
No 213
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=80.94 E-value=6.7 Score=33.70 Aligned_cols=76 Identities=11% Similarity=0.237 Sum_probs=53.9
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+.+.+... ++.+..++|+.+....... ... ...|+|+|. .+ ...+++..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~ 99 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIER 99 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhh
Confidence 3457999999999999888877765 6778888888776554332 233 478999993 22 34567888
Q ss_pred eeEEEEeccc
Q 009496 285 IRMFVLDEVD 294 (533)
Q Consensus 285 i~~vVvDEah 294 (533)
+++||.-+..
T Consensus 100 ~~~Vi~~d~p 109 (172)
T 1t5i_A 100 VNIAFNYDMP 109 (172)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEECCC
Confidence 8888875443
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.55 E-value=7.3 Score=42.45 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999854
No 215
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.25 E-value=2.1 Score=41.45 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-----CCCcEEEEccCCCchhHHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~-----~g~~vli~a~TGsGKT~~~ 189 (533)
|-..|++++--+...+.|...=. .|.+ .|.++ ..+.+++.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34578887766666665543200 0000 01111 2367999999999999853
No 216
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.09 E-value=1.6 Score=39.98 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.|.-+++.|++|+|||..++-.+.+.+.. .+..++|+.-. +-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~---------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------cCCCceeeccc-CCHHHHHHHHH
Confidence 45678999999999997544333333332 23447776643 22344444433
No 217
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.71 E-value=2.9 Score=41.03 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999854
No 218
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.35 E-value=0.7 Score=46.11 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
|-.+|++.+=-+...+.|+.. .+..|--++... +-..+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 556899987556666666543 111221111111 113478999999999999853
No 219
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.31 E-value=9.2 Score=37.83 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=53.8
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HH-cCCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++..+..+.+.++.. ++.+..++|+.+...+... .. ...+|+||| +.+. ..+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCccc
Confidence 4678999999999999888877764 6788888888776554332 22 347899999 4444 4568889
Q ss_pred eeEEEE
Q 009496 285 IRMFVL 290 (533)
Q Consensus 285 i~~vVv 290 (533)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998886
No 220
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.09 E-value=7.5 Score=34.17 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----ccc-cCCCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LGR-GVELLG 450 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-----~~~-Gldi~~ 450 (533)
+.++||.++++.-+..+++.+.... +..+..++|+.+..+.... + .+..+|+|+|.- +.+ .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 4589999999999888888776332 6788899999886544322 2 356889999972 222 346677
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888776
No 221
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.80 E-value=6.4 Score=34.64 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-ccCCCCCcc
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG-RGVELLGVR 452 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~-~Gldi~~v~ 452 (533)
.+.++||.++++.-+..+++.+.... +..+..++|+.+.......+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 35689999999999999998887433 467888999887554433332 3578999996 122 346677788
Q ss_pred EEEEc
Q 009496 453 QVIIF 457 (533)
Q Consensus 453 ~VI~~ 457 (533)
+||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88763
No 222
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=78.59 E-value=0.63 Score=26.06 Aligned_cols=14 Identities=36% Similarity=1.044 Sum_probs=12.1
Q ss_pred CCeeeeeccccccc
Q 009496 36 EPKCVICGRYGEYI 49 (533)
Q Consensus 36 ~~~c~~c~~~~~~~ 49 (533)
-|-|..|..+||+.
T Consensus 3 RpYCe~CE~FGH~t 16 (26)
T 2hqh_E 3 RPYCEICEMFGHWA 16 (26)
T ss_dssp -CEETTTTEESSCG
T ss_pred CccchHHHHhCccc
Confidence 47899999999987
No 223
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.51 E-value=1.2 Score=38.84 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+-++++||+|||||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999984
No 224
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.40 E-value=18 Score=33.00 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCCc
Q 009496 381 TPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLGV 451 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~v 451 (533)
+.++||.++++.-+..+++.+.. ..+..+..++|+.+..+....+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 45899999999999888887753 2357788889988755443322 356889999972 2 123577778
Q ss_pred cEEEE
Q 009496 452 RQVII 456 (533)
Q Consensus 452 ~~VI~ 456 (533)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88776
No 225
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.99 E-value=2.7 Score=40.05 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=30.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHH-HHHHH--HhCCCcEEEEccCCCchhHHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQM-QAIPS--ALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~-~~i~~--i~~g~~vli~a~TGsGKT~~~ 189 (533)
|-..|+++.-.+...+.|...- . .|... +.+.. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3456787766666665554320 0 00000 00111 124677999999999999853
No 226
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.71 E-value=5.7 Score=35.91 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVT----TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELL 449 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~ 449 (533)
.+.++||.++++.-+..+++.+... .+..+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999888888633 267888999999876654433 35789999973 1 2345666
Q ss_pred CccEEEE
Q 009496 450 GVRQVII 456 (533)
Q Consensus 450 ~v~~VI~ 456 (533)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777776
No 227
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.60 E-value=5.8 Score=34.64 Aligned_cols=74 Identities=11% Similarity=0.227 Sum_probs=44.6
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH---HHHHH-cCCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQ-QGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+...++.. ++.+..+.|+.+.... +.... ....|+|+| +.+. ..+++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhh-cCCCccc
Confidence 4567999999999999888877664 5778888887654432 22333 347899999 3332 3457788
Q ss_pred eeEEEEec
Q 009496 285 IRMFVLDE 292 (533)
Q Consensus 285 i~~vVvDE 292 (533)
+++||.=+
T Consensus 115 ~~~VI~~d 122 (185)
T 2jgn_A 115 VKHVINFD 122 (185)
T ss_dssp BSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 228
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.54 E-value=1.2 Score=43.38 Aligned_cols=18 Identities=50% Similarity=0.757 Sum_probs=16.6
Q ss_pred hCCCcEEEEccCCCchhH
Q 009496 170 LSGKSLLVSANTGSGKTA 187 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~ 187 (533)
..|..+++.+|||||||+
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 478899999999999998
No 229
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=77.50 E-value=8 Score=35.52 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----cc--ccCCCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG--RGVELLG 450 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-----~~--~Gldi~~ 450 (533)
+.++||.++++.-+..+++.++. ..+..+..++|+.+..++...+ .+..+|+|+|.- +. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999998888877752 3478899999998866544333 256899999962 11 4567788
Q ss_pred ccEEEEc
Q 009496 451 VRQVIIF 457 (533)
Q Consensus 451 v~~VI~~ 457 (533)
+++||.-
T Consensus 187 ~~~lViD 193 (249)
T 3ber_A 187 LKYLVMD 193 (249)
T ss_dssp CCEEEEC
T ss_pred cCEEEEc
Confidence 8888863
No 230
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.44 E-value=1.4 Score=43.70 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.2
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009496 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~ 188 (533)
..|..+++.||||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 231
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=77.20 E-value=6 Score=35.61 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------ccccCCCCCc
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI------LGRGVELLGV 451 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~------~~~Gldi~~v 451 (533)
.+.++||.++++.-+..+++.+... .+..+..++|+.+..++...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999888743 467888899987755443332 2 35889999961 1235677788
Q ss_pred cEEEEc
Q 009496 452 RQVIIF 457 (533)
Q Consensus 452 ~~VI~~ 457 (533)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 888763
No 232
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=77.20 E-value=5.5 Score=36.24 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-cCCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGR-GVELLG 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~~-Gldi~~ 450 (533)
.+.++||.++++.-+..+++.++.. .+..+..++|+.+... ....+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999888888632 2567778888765433 33445567789999994 2333 366777
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888776
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.12 E-value=1.7 Score=40.49 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.9
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009496 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~ 189 (533)
..+..+++.|++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999743
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.09 E-value=1.2 Score=43.35 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
+-++|+||||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 235
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.99 E-value=2.5 Score=43.59 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHH
Q 009496 163 MQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 163 ~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
..++-.+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44555566889999999999999984
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.94 E-value=1.5 Score=38.97 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.++.+++.|++|||||+.+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999998543
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.91 E-value=1.4 Score=37.99 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
++-++++|++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=76.88 E-value=1.5 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
++.+++.|++|||||+.+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998654
No 239
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=76.81 E-value=0.63 Score=27.24 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=11.3
Q ss_pred Ceeeeeccccccc
Q 009496 37 PKCVICGRYGEYI 49 (533)
Q Consensus 37 ~~c~~c~~~~~~~ 49 (533)
..|+.||++||+.
T Consensus 7 ~~C~nCgk~GH~a 19 (29)
T 1nc8_A 7 IRCWNCGKEGHSA 19 (29)
T ss_dssp CBCTTTSCBSSCG
T ss_pred CEEEECCccccCH
Confidence 5699999999955
No 240
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=76.74 E-value=3.5 Score=43.54 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=53.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF--LVGEVPVIVATG 440 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f--~~g~~~VLvaT~ 440 (533)
.+.+||.++++.-+......|. ..|+.+..++|+++..++..++..+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLK-QLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH-HHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4589999999999999999998 6699999999999999999998888 568999999998
No 241
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.60 E-value=1.3 Score=39.53 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.++-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566899999999999754
No 242
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.51 E-value=1.2 Score=38.81 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.3
Q ss_pred hCCCcEEEEccCCCchhHHHH
Q 009496 170 LSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~l 190 (533)
..++.+++.|++|||||+..-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998543
No 243
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.06 E-value=2.3 Score=42.36 Aligned_cols=42 Identities=17% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+.++++.|+||||||...-. ++..+. ..+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~---------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREY---------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHH---------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHH---------HCCCEEEEEeCCcCH
Confidence 567899999999999975333 333322 235668888887654
No 244
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.05 E-value=6.2 Score=44.81 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHHh---hcCC----eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCC-CC
Q 009496 379 HFTPPAVVYVGSRLGADLLSNAISV---TTGM----KALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVE-LL 449 (533)
Q Consensus 379 ~~~~~~lIF~~s~~~~~~l~~~l~~---~~~~----~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-~~~~Gld-i~ 449 (533)
..+.++||.++++.-|..+++.++. ..+. .+..+||+.+..++....+.+.. .+|+|+|+ .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 3467899999999999888888763 2356 78999999999888888887776 99999997 2222222 55
Q ss_pred CccEEEEc
Q 009496 450 GVRQVIIF 457 (533)
Q Consensus 450 ~v~~VI~~ 457 (533)
.+++||.-
T Consensus 175 ~l~~lViD 182 (1054)
T 1gku_B 175 HFDFIFVD 182 (1054)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 77788763
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=76.02 E-value=2.9 Score=40.09 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 009496 172 GKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
+.-+.+.+|+|+|||+. +-.+..+.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHH
Confidence 45678899999999984 44444444
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=75.85 E-value=1.6 Score=39.05 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|+-+++.||+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999853
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.81 E-value=1.4 Score=42.46 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
+-++|.||||||||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999998543
No 248
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=75.73 E-value=27 Score=36.22 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=57.8
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HH-cCCceeecChHHHHHHHHcCCCCCC
Q 009496 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELD 283 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~ 283 (533)
..+.++||.++++.-+..+.+.++..... ++.+..++|+.+....... +. ...+|+||| +.+ ...+++.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~GiDip 409 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFP 409 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chh-hcCCCcc
Confidence 34678999999999999999988876542 5678888888776554332 22 348899999 333 3457888
Q ss_pred CeeEEEEeccc
Q 009496 284 DIRMFVLDEVD 294 (533)
Q Consensus 284 ~i~~vVvDEah 294 (533)
++++||.-..-
T Consensus 410 ~v~~VI~~~~p 420 (563)
T 3i5x_A 410 NVHEVLQIGVP 420 (563)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEECCC
Confidence 89988865543
No 249
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.22 E-value=1.3 Score=44.81 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=31.5
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.|-.+|++.+--+...+.|... .+..|--++... +--.+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4566799887556666555432 111111111111 113477999999999999853
No 250
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.88 E-value=5.9 Score=36.99 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCCHHHHH-HHHHHhCCC-----cEEEEccCCCchhHHHH
Q 009496 145 KLLQNIEAAGYDMPTPVQMQ-AIPSALSGK-----SLLVSANTGSGKTASFL 190 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~~~Q~~-~i~~i~~g~-----~vli~a~TGsGKT~~~l 190 (533)
.+.+-|+-.||. |++-. ++..++.++ .+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 567777777765 55533 344555443 48999999999998544
No 251
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.78 E-value=32 Score=36.66 Aligned_cols=94 Identities=13% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++|+..+..+.+.++.. ++++..++|+.+....... +.. ..+|+||| +.+ ...+++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hCCcccCC
Confidence 4568999999999998888877765 5677778877665544333 333 48899998 333 45678889
Q ss_pred eeEEEEeccchhhhcchHHHHHHHHHhC
Q 009496 285 IRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 285 i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
+++||+-+++...-......+....-+.
T Consensus 514 v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 514 VSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp EEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred CCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 9999999987653222233444444443
No 252
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.69 E-value=2.7 Score=41.12 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999854
No 253
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=74.23 E-value=2.2 Score=41.93 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++.-|+||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556678887 577899999999863
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.98 E-value=1.7 Score=41.66 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36889999999998543
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.90 E-value=1.4 Score=37.64 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-+++.|++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.90 E-value=1.9 Score=38.24 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.6
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009496 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~ 189 (533)
..|.-+.+.|++|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999843
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.80 E-value=1.7 Score=40.34 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-++++|++|||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999998543
No 258
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.65 E-value=7.7 Score=35.06 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c----cc--cCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L----GR--GVELL 449 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~----~~--Gldi~ 449 (533)
.+.++||.++++.-+..+++.+... .++.+..++|+.+..+....+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999888888632 347888899988755443332 46899999962 2 22 36667
Q ss_pred CccEEEEc
Q 009496 450 GVRQVIIF 457 (533)
Q Consensus 450 ~v~~VI~~ 457 (533)
++++||.-
T Consensus 171 ~~~~lViD 178 (236)
T 2pl3_A 171 DLQMLVLD 178 (236)
T ss_dssp TCCEEEET
T ss_pred cccEEEEe
Confidence 78777763
No 259
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=73.55 E-value=2 Score=37.48 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+.-+++.|++|||||+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.55 E-value=1.8 Score=41.79 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHhCCCcEEEEccCCCchhHHH
Q 009496 167 PSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 167 ~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34457889999999999999743
No 261
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.54 E-value=2.4 Score=40.97 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455668887 577999999999864
No 262
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.31 E-value=1.7 Score=44.01 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=33.0
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.|-.+|++.+--+...+.|+.. .+..|--++... +--.+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 3557889987777777766543 111111111110 123578999999999999843
No 263
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=73.22 E-value=6.6 Score=41.34 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=29.4
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecc
Q 009496 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SA 322 (533)
+.+-+++++||.-.-+|......+...+..+....++.+.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 536 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 34567899999998888777777777777664445555544
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=73.22 E-value=2.1 Score=37.38 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+..+++.|++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.13 E-value=2.1 Score=38.06 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+-+.+.||+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999984
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=73.03 E-value=2.1 Score=38.12 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+-++++||+|+|||+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 677789999999999984
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.87 E-value=1.2 Score=44.98 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=31.2
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.|-.+|++.+=-+...+.|... .+..|--++... +-..+.+|+.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3556899887656666555432 111111111111 113467999999999999853
No 268
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=72.87 E-value=22 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|.-+++.+++|+|||+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl 298 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLV 298 (525)
T ss_dssp SSCEEEEEECTTSSHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH
Confidence 6677899999999999843
No 269
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=72.63 E-value=13 Score=36.33 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 450 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~ 450 (533)
+.++||.|+++.-+..+++.+.+.. +..+..++|+.+..+.... +..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4589999999999998888776332 7889999999987655443 44577899999962 2 23456777
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888876
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.55 E-value=2.3 Score=36.41 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+++.|+.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999843
No 271
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.46 E-value=2.3 Score=41.48 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445567887 577899999999863
No 272
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.41 E-value=6.9 Score=36.93 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3678999999999999854
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.19 E-value=4.2 Score=38.76 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ll 191 (533)
.++-+++.+++|+|||+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355688899999999985443
No 274
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=72.02 E-value=38 Score=35.29 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HH-cCCceeecChHHHHHHHHcCCCCCC
Q 009496 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELD 283 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~ 283 (533)
..+.++||.++|+.-+..+.+.++..... ++.+..++|+.+....... +. ....|+||| +.+ ...+++.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~GiDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hcCCCcc
Confidence 34668999999999999999988876542 5678888888776554332 23 348899999 333 3457888
Q ss_pred CeeEEEEeccc
Q 009496 284 DIRMFVLDEVD 294 (533)
Q Consensus 284 ~i~~vVvDEah 294 (533)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 99998876644
No 275
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.01 E-value=2.9 Score=40.05 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
.|.-+.+.|++|+|||+. +..+..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 345578899999999984 33444443
No 276
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.00 E-value=2.6 Score=42.08 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3445668887 577899999999864
No 277
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.86 E-value=2.8 Score=40.99 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445668887 577899999999864
No 278
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.85 E-value=2.5 Score=37.59 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.8
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009496 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~ 189 (533)
..++-++++|++|||||+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 36778999999999999853
No 279
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.68 E-value=2.8 Score=41.93 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778988 467899999999874
No 280
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.66 E-value=2.4 Score=42.54 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=31.9
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.|-.+|++.+=-+...+.|... .+..|--++...+ --.+.+|+.||+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3567899987555555555432 1122222221111 13467999999999999843
No 281
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.52 E-value=2.9 Score=41.18 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445668887 577999999999863
No 282
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=71.47 E-value=2.6 Score=41.18 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778988 467899999999874
No 283
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.45 E-value=2.9 Score=40.52 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred HHHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 164 QAIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 164 ~~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
..+..++.|.| ++..|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778887 577999999999864
No 284
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.43 E-value=2.3 Score=39.24 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
..+.+++.||+|+|||..+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 285
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.25 E-value=2.8 Score=41.32 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455678887 567899999999863
No 286
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=71.10 E-value=1e+02 Score=32.70 Aligned_cols=78 Identities=9% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+....... +.. ..+|+||| +.+ ...+++..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCC
Confidence 3568999999999999888877765 5677777877665544333 333 48899998 333 35578889
Q ss_pred eeEEEEeccchh
Q 009496 285 IRMFVLDEVDCM 296 (533)
Q Consensus 285 i~~vVvDEah~~ 296 (533)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888754
No 287
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.07 E-value=3 Score=41.12 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555678887 577899999999863
No 288
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.07 E-value=2.9 Score=40.91 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678887 577899999999864
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=70.99 E-value=2 Score=37.53 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|.-+++.|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566789999999999984
No 290
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.95 E-value=2.9 Score=40.93 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=18.7
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 009496 166 IPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 166 i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
+..++.|.+ ++..|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445668887 577899999999863
No 291
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.93 E-value=1.5 Score=51.05 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+.+-++|+||||||+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTV 1121 (1321)
T ss_dssp TTCEEEEECSTTSSTTSH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 678899999999999983
No 292
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=70.74 E-value=2.9 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
++..++.|.| ++..|+||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556678887 467899999999863
No 293
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=70.73 E-value=3.1 Score=40.65 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3455668887 577899999999863
No 294
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.68 E-value=2.7 Score=40.28 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
...++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5678999999999999853
No 295
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=70.67 E-value=3 Score=40.89 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455678887 577899999999863
No 296
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.58 E-value=2.3 Score=40.30 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.++.+++.||+|+|||+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999854
No 297
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.54 E-value=3 Score=40.90 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
++..++.|.| ++..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678887 577899999999864
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.53 E-value=2.6 Score=37.23 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|.-+.+.||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999984
No 299
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.48 E-value=2.8 Score=41.16 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4555678887 577899999999863
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=70.06 E-value=2.3 Score=41.01 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.++++||||||||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998543
No 301
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=69.99 E-value=18 Score=33.33 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc--ccCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG--RGVELL 449 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~--~Gldi~ 449 (533)
.+.++||.++++.-+...++.+++ ..+..+..++|+......... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999988888863 345677888998876554333 3334 89999995 222 246778
Q ss_pred CccEEEEc
Q 009496 450 GVRQVIIF 457 (533)
Q Consensus 450 ~v~~VI~~ 457 (533)
++++||.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88888763
No 302
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=69.61 E-value=2.6 Score=41.18 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5556678887 577899999999864
No 303
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=69.47 E-value=3.2 Score=41.14 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455668887 577899999999864
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.44 E-value=2.6 Score=35.95 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.|+.|||||+..-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.43 E-value=2.3 Score=37.54 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHH
Q 009496 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~ 188 (533)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 306
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=69.20 E-value=2.1 Score=37.26 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.|..+++.|++|||||+.+-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999998543
No 307
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=69.12 E-value=12 Score=35.66 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHH---Hc-CCceeecChHHHHHHHHcCCCCCCCe
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRI---QQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
+.++||.++++.-+..+.+.+.. .++.+..++|+.+...+...+ .. ..+|+||| +.+. ..+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccce
Confidence 56799999999988877766654 367889999987765544333 33 47899999 3333 45678889
Q ss_pred eEEEEecc
Q 009496 286 RMFVLDEV 293 (533)
Q Consensus 286 ~~vVvDEa 293 (533)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 98885443
No 308
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=69.09 E-value=2.8 Score=41.27 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566778887 566899999999864
No 309
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.88 E-value=5.1 Score=39.26 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+-+++.+++|+|||..++-.+. .+.. .+.+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~-~~~~---------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA-AAQR---------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH---------CCCeEEEEeCC
Confidence 456789999999999986544333 3322 23457777753
No 310
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=68.78 E-value=7.8 Score=44.60 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=39.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhc--ccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVISQCANIRLH--HSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~--~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
..+|.|..|||||.+...-++..+...... ....-.-..+|+|+=|+.-|..+.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999987665566655431100 000012346999999999988887776654
No 311
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.71 E-value=3.1 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchhHH
Q 009496 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~ 188 (533)
+-+.+.||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999984
No 312
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.69 E-value=3.2 Score=41.57 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=20.7
Q ss_pred HHHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 164 QAIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 164 ~~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
..+..++.|.+ ++..|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788887 577899999999864
No 313
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=68.65 E-value=3.1 Score=41.08 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445667887 577899999999863
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.63 E-value=2.6 Score=40.97 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-++|+||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999998543
No 315
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=68.63 E-value=5 Score=39.21 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+-+++.+++|+|||+.++..+ ..+.. .+.+++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la-~~~~~---------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAV-ANAQA---------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH-HHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHh---------CCCeEEEEECC
Confidence 45678999999999998544333 33322 24457777643
No 316
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.58 E-value=7.2 Score=38.13 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
..+.+++.||+|+|||+.+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 317
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.48 E-value=2.9 Score=38.69 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999853
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.34 E-value=2.9 Score=36.00 Aligned_cols=16 Identities=31% Similarity=0.357 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+++.|++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4788999999999854
No 319
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.25 E-value=5.6 Score=36.18 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.9
Q ss_pred cEEEEccCCCchhHHHHHHHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVIS 195 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~ 195 (533)
++++.++.|+|||+.++-.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999975544433
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.16 E-value=3.2 Score=37.04 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=14.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|.-+.|.||+|||||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678899999999983
No 321
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=67.85 E-value=16 Score=36.57 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhhcCC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-cc-----ccCCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVTTGM---KALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LG-----RGVELLG 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~---~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~~-----~Gldi~~ 450 (533)
.+.++||.|+++.-+...++.+.+..+. .+..+||+....++..... ..+|+|+|.- +. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4568999999999999999988866666 8999999999877655443 4689999962 22 1456677
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 788776
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.77 E-value=3.3 Score=36.68 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|.-+++.|+.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999853
No 323
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.75 E-value=3.9 Score=40.18 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 009496 172 GKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
|.-+.+.+++|+|||+. +-.+..+.
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 34578899999999984 33444443
No 324
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=67.69 E-value=3.7 Score=41.47 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
++..++.|.| ++..|+||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3455678887 577899999999864
No 325
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.65 E-value=4.9 Score=40.85 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.++++|+.||+|+|||+.+
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 3468999999999999854
No 326
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=67.65 E-value=3 Score=41.35 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=18.5
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 009496 166 IPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 166 i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
+..++.|.+ ++..|+||||||...
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345668887 567899999999864
No 327
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.53 E-value=1.3 Score=41.72 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=25.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHH-HHHHHHH--hCCCcEEEEccCCCchhHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQ-MQAIPSA--LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~~i~~i--~~g~~vli~a~TGsGKT~~ 188 (533)
|-.+|++++-.+.+.+.|...= ..|+. .+++..+ .-.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4457888876666666665420 01111 1222221 1234499999999999984
No 328
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=67.52 E-value=2.2 Score=39.41 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~--~g~~vli~a~TGsGKT~~ 188 (533)
|-.+|+++.-.+.....++..-.. .. ...++..+- -.+.+++.||+|+|||+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 445788876666665555443110 00 012222221 134599999999999984
No 329
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=67.46 E-value=3.7 Score=38.05 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|+.+++.|++|||||+..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4899999999999999854
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=67.24 E-value=3.6 Score=37.13 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009496 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~ 188 (533)
..|+-+.+.||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999984
No 331
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=67.17 E-value=19 Score=35.35 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=53.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCCe
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
+.++||.++++.-+..+.+.+... +..+..++|+.+...+... ... ..+|+|+| +.+ ...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-ccCCCccCC
Confidence 467999999999999888888765 5677888888776554332 333 47899999 333 355788899
Q ss_pred eEEEEec
Q 009496 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988543
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.01 E-value=4.5 Score=35.16 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+..+++.|+.|||||+.+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568899999999998543
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=66.88 E-value=2.8 Score=36.53 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
+.-+++.|++|||||+.+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4458899999999998643
No 334
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=66.66 E-value=2.4 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|.-+.+.||.|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566789999999999843
No 335
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.44 E-value=3 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|..+++.|+.|||||+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999853
No 336
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.32 E-value=21 Score=34.57 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=56.0
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHH---HHHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+.+.++.. +..+..++|+.+...+.. .... ..+|+|+|. .+ ...+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 4568999999999999888877765 567788888876554433 2333 478999993 33 45678899
Q ss_pred eeEEEEeccch
Q 009496 285 IRMFVLDEVDC 295 (533)
Q Consensus 285 i~~vVvDEah~ 295 (533)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999766543
No 337
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.10 E-value=3.6 Score=40.60 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999854
No 338
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.08 E-value=3.3 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=21.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009496 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
++|.+++|||||.-+.- +.. . +..++|++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~--------~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIG--------D-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHC--------S-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHH-----HHh--------c-CCCeEEEecCCCC
Confidence 68999999999974332 111 1 3457888875443
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=66.07 E-value=3.5 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
+++++.++.|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999998654
No 340
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=65.98 E-value=3.5 Score=40.70 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.+ ++..|+||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666778887 567899999999864
No 341
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.96 E-value=4.2 Score=35.41 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 009496 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~vli~a~TGsGKT~~ 188 (533)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999983
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.93 E-value=4.3 Score=34.16 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 009496 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~vli~a~TGsGKT~~ 188 (533)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999985
No 343
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=65.83 E-value=3.1 Score=39.56 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999853
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=65.38 E-value=3.1 Score=41.45 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-++|.||||||||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36789999999998543
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=65.37 E-value=3.6 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+..+++.|++|||||+.+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999998543
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=65.33 E-value=3.9 Score=35.73 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+..+++.|++|||||+.+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 55678999999999998543
No 347
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.21 E-value=2.9 Score=37.48 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCC----CcEEEEccCCCchhHHH
Q 009496 145 KLLQNIEAAGYDMPTPVQMQAIPSALSG----KSLLVSANTGSGKTASF 189 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~~~Q~~~i~~i~~g----~~vli~a~TGsGKT~~~ 189 (533)
.+.+.|+-.|+ .+..+ ...+..++.+ +.+++.+|+|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44555553332 33333 3344444433 35899999999999854
No 348
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=64.98 E-value=3.8 Score=40.18 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+|+.||+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999854
No 349
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.62 E-value=5.1 Score=35.28 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCeeEEEEeccchh--hhcchHHHHHHHHHhCCCCcEEEecccC
Q 009496 282 LDDIRMFVLDEVDCM--LQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 282 l~~i~~vVvDEah~~--~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
..+.+++|+||+..+ .+..|...+..++... ..+|+-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeec
Confidence 456789999998777 3445677777776642 2344435554
No 350
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=64.59 E-value=4.2 Score=36.20 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-.++.|+.|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999998653
No 351
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=64.58 E-value=6.7 Score=38.58 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=25.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
.|+-++|.+++|+|||..+ +.++..+.. .+..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~---------~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQK---------AGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHH---------TTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHH---------CCCeEEEEECC
Confidence 4567899999999999754 344444332 23457777654
No 352
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.53 E-value=3.5 Score=36.50 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|.-+.+.|+.|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667889999999999854
No 353
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.46 E-value=30 Score=35.47 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHHHH
Q 009496 174 SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ll 191 (533)
.+++++++|+|||+.+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477899999999986543
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.33 E-value=6.1 Score=34.10 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhHH
Q 009496 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~vli~a~TGsGKT~~ 188 (533)
-+.+.++.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 355
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.99 E-value=6.5 Score=48.86 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHH-HH---HHHhCCCcEEEEccCCCchhHHHHH
Q 009496 142 LSQKLLQNIEAAGYDMPTPVQMQ-AI---PSALSGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~-~i---~~i~~g~~vli~a~TGsGKT~~~ll 191 (533)
+.+.+.+.+.+.|+. +++.+.. ++ ..+.....+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445566677777774 5555532 22 3344667899999999999997643
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=63.93 E-value=4.3 Score=34.90 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.++.|||||+.+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999998543
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.92 E-value=4.1 Score=35.18 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=16.3
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
-.++.+++|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 468899999999984 33444443
No 358
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=63.86 E-value=12 Score=37.09 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHh---CCCcEEEEccCCCchhHHH
Q 009496 159 TPVQMQAIPSAL---SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 159 ~~~Q~~~i~~i~---~g~~vli~a~TGsGKT~~~ 189 (533)
-..=..+|..++ .|+.+.+.+++|+|||...
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 344455666665 7899999999999999843
No 359
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=63.76 E-value=10 Score=33.87 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc------cccCCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL------GRGVELLG 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~------~~Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.. ..+..+..++|+.+..++... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887763 346788889998775544332 22 38899999621 23566777
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888776
No 360
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=63.72 E-value=3.9 Score=36.13 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
+-+++.|+.|||||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=63.66 E-value=3.5 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+.-+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999854
No 362
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=63.51 E-value=25 Score=33.64 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+.+.++.. +..+..++|+.+....... ... ...|+|+| +.+.. .+++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSR-GIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHH-HCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCCccc
Confidence 4567999999999999888887765 5678888888765544322 233 47899999 33332 356778
Q ss_pred eeEEEEec
Q 009496 285 IRMFVLDE 292 (533)
Q Consensus 285 i~~vVvDE 292 (533)
+++||.-+
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88888644
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=63.35 E-value=4.7 Score=34.91 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
..+++.|++|||||+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999998643
No 364
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.31 E-value=6.6 Score=38.44 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.|+-++|.+|+|+|||+. ++.++..+.. .+.+++|+..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~---------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQK---------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHH---------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh---------cCCeEEEEeccccc
Confidence 456689999999999974 4444443332 24557887754333
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=63.19 E-value=4.5 Score=35.60 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+..+++.|+.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 366
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=63.16 E-value=2.9 Score=39.24 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=29.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcEEEEccCCCchhHH
Q 009496 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~--~g~~vli~a~TGsGKT~~ 188 (533)
|-..|+++.-.+.....+...-.. .. ...++..+- -.+.+++.+|+|+|||+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 445677776666666655543110 00 011222211 134599999999999984
No 367
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.12 E-value=7.4 Score=35.41 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----ccc---cCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LGR---GVEL 448 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-----~~~---Gldi 448 (533)
.+.++||.++++.-+..+++.+.+. .+..+..++|+..... .......+..+|+|+|.- +.+ .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4558999999999999988888632 3566666666532211 111223467789999952 222 4778
Q ss_pred CCccEEEEcC
Q 009496 449 LGVRQVIIFD 458 (533)
Q Consensus 449 ~~v~~VI~~~ 458 (533)
.++++||.-.
T Consensus 174 ~~~~~lViDE 183 (245)
T 3dkp_A 174 ASVEWLVVDE 183 (245)
T ss_dssp TTCCEEEESS
T ss_pred ccCcEEEEeC
Confidence 8888888643
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.02 E-value=4.6 Score=35.95 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=16.2
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 009496 168 SALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 168 ~i~~g~~vli~a~TGsGKT~~ 188 (533)
.+..|+-+.+.+|.|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788889999999999984
No 369
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=62.81 E-value=5.1 Score=38.34 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+-+.|.||+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 678889999999999983
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.52 E-value=4.7 Score=36.21 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
+..+++.|++|||||+.+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 371
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=62.48 E-value=6.3 Score=45.34 Aligned_cols=30 Identities=3% Similarity=-0.030 Sum_probs=22.3
Q ss_pred CEEEEEcCc-ccHHHHHHHHHhhcCCeEEEEc
Q 009496 383 PAVVYVGSR-LGADLLSNAISVTTGMKALSIH 413 (533)
Q Consensus 383 ~~lIF~~s~-~~~~~l~~~l~~~~~~~~~~ih 413 (533)
-+.|.+.+. ..+..+...|. ..++++....
T Consensus 344 diAVL~R~~~~~~~~i~~~L~-~~gIP~~~~~ 374 (1166)
T 3u4q_B 344 DVAILARQPEDYKDMVKEVFA-DYEIPYFIDG 374 (1166)
T ss_dssp GEEEEESCGGGTHHHHHHHHH-HTTCCEEESS
T ss_pred heEEEeCChHHHHHHHHHHHH-HcCCCEEECC
Confidence 478888887 47888888887 6788866533
No 372
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=62.44 E-value=9.6 Score=39.25 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+.+++|.|+||||||...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3568999999999999853
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=62.34 E-value=4.2 Score=36.27 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.|+.|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 374
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=62.34 E-value=26 Score=34.16 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=53.4
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHH---HHHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++.-+..+.+.++.. +..+..++|+.+...+.. ...+ ...|+|+|. .+ ...+++..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 3568999999999999888888776 567788888877554332 2333 478999992 22 34577889
Q ss_pred eeEEEEec
Q 009496 285 IRMFVLDE 292 (533)
Q Consensus 285 i~~vVvDE 292 (533)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888644
No 375
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=62.05 E-value=5.8 Score=38.20 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
++-+++.+++|+|||+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999998543
No 376
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=61.99 E-value=25 Score=34.54 Aligned_cols=73 Identities=8% Similarity=0.163 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HH-cCCceeecChHHHHHHHHcCCCCCCCe
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
..++||.++++.-+..+.+.+... ++.+..++|+.+..+.... .. ....|+|+|. .+ ...+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 357999999999999888877664 5677888888775543322 22 3478999993 33 355788899
Q ss_pred eEEEEec
Q 009496 286 RMFVLDE 292 (533)
Q Consensus 286 ~~vVvDE 292 (533)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988644
No 377
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.54 E-value=14 Score=34.91 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc------c-ccCCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVT----TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL------G-RGVELL 449 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~------~-~Gldi~ 449 (533)
..++||.++++.-|..++..+... .+..+..++|+.....+. ....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999888777632 256677777776532211 3567899999731 1 356778
Q ss_pred CccEEEEcC
Q 009496 450 GVRQVIIFD 458 (533)
Q Consensus 450 ~v~~VI~~~ 458 (533)
.+++||.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888888643
No 378
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.48 E-value=5.2 Score=39.24 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=15.7
Q ss_pred CCCc--EEEEccCCCchhHHH
Q 009496 171 SGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~--vli~a~TGsGKT~~~ 189 (533)
.|.+ ++..|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 588999999999864
No 379
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.41 E-value=2.5 Score=39.34 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999854
No 380
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=61.39 E-value=32 Score=34.39 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=51.6
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCCeeE
Q 009496 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDIRM 287 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~ 287 (533)
.+||.++++.-+..+.+.+... ++.+..++|+.+..+.... .++ ...|+|||. .+ ...+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCE
Confidence 3999999999999888877664 6778888888776554333 333 478999993 33 35678889998
Q ss_pred EEEe
Q 009496 288 FVLD 291 (533)
Q Consensus 288 vVvD 291 (533)
||.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8863
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=61.32 E-value=5 Score=36.04 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
...+++.|++|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998543
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=61.32 E-value=5.1 Score=34.13 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
+.+++.|+.|||||+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 383
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=61.29 E-value=5.2 Score=35.27 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
+..+++.|++|||||+.+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998543
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=61.28 E-value=4.6 Score=36.09 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.|+.|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 385
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.22 E-value=3.8 Score=37.16 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=11.7
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+-+.+.||+|||||+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 386
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=61.14 E-value=4.1 Score=36.04 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+.-+++.|+.|||||+.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556889999999999854
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.97 E-value=5.1 Score=35.05 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+.-+++.|++|||||+.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 388
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.91 E-value=3.6 Score=35.89 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
+-+++.+++|||||+.+
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999843
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=60.85 E-value=4.8 Score=36.38 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+++.|++|||||+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 390
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.74 E-value=4.6 Score=38.26 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
.-++++|++|||||+.+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 391
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.73 E-value=4.6 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+++.|+.|||||+.+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 392
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=60.53 E-value=24 Score=35.74 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.7
Q ss_pred HHHHH---hCCCcEEEEccCCCchhHHH
Q 009496 165 AIPSA---LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i---~~g~~vli~a~TGsGKT~~~ 189 (533)
++..+ ..|+.+++.++.|.|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 44444 37889999999999999853
No 393
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.47 E-value=4.3 Score=38.51 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999854
No 394
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=60.43 E-value=10 Score=38.32 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=44.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
+.++||.+|+++-+..+++.++.. ++++..++|. .....+....+ ..+|+||| +.+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhh-eeeccC-ceEE
Confidence 457999999999999988887775 5677777774 33333444444 48899999 3333 446777 8887
Q ss_pred E
Q 009496 289 V 289 (533)
Q Consensus 289 V 289 (533)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.31 E-value=4.9 Score=35.94 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHHHH
Q 009496 174 SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ll 191 (533)
.+++.||+||||++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986543
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=60.26 E-value=4.7 Score=34.96 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-+++.|++|||||+.+-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 397
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=60.19 E-value=5.5 Score=36.02 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.0
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 009496 169 ALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~ 188 (533)
+..|+-+.+.||.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34677889999999999984
No 398
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.06 E-value=11 Score=39.40 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHH
Q 009496 173 KSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
.+++|.|.||||||.+. -.++..++
T Consensus 215 pHlLIaG~TGSGKS~~L-~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV-NAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CeeEEECCCCCCHHHHH-HHHHHHHH
Confidence 57899999999999854 44444343
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.06 E-value=6 Score=35.24 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 160 PVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 160 ~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
+.+... ..+..|.-+++.|++|||||+.+
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 444444 23456777899999999999854
No 400
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=59.90 E-value=5.2 Score=35.92 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
..+.+.|++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998543
No 401
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.82 E-value=5.2 Score=47.40 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=34.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|+-+.+.+|.|||||+.++ +++.... ..+..++++.+--+|.... ++.++
T Consensus 1430 rg~~iei~g~~~sGkttl~~-~~~a~~~---------~~g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTL-QVIAAAQ---------REGKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHH-HHHHHHH---------HTTCCEEEECTTSCCCHHH---HHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHH-HHHHHHH---------hcCCeEEEEecCCCCCHHH---HHHcC
Confidence 45779999999999998654 4443333 2466788888876774432 55554
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=59.48 E-value=4.9 Score=34.64 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.|..+++.++.|||||+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566889999999999853
No 403
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=59.28 E-value=5.3 Score=36.07 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHHH
Q 009496 173 KSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ll 191 (533)
+-+++.||+||||++.+..
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4577899999999986543
No 404
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=59.00 E-value=4.8 Score=35.71 Aligned_cols=19 Identities=32% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+.-+.+.|++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556789999999999853
No 405
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=58.72 E-value=5.6 Score=35.20 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+.-+++.|+.|||||+..-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999998543
No 406
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.66 E-value=5.6 Score=36.36 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778999999999998
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.52 E-value=5.5 Score=38.53 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 009496 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~ 188 (533)
..+++.||+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999984
No 408
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=58.23 E-value=18 Score=34.74 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=15.6
Q ss_pred EEEEccCCCchhHHHHHHHHHHHH
Q 009496 175 LLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
+.+.|++|||||+.+ -.+..++
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHH
T ss_pred EEEECCCCCCHHHHH--HHHHHHh
Confidence 677999999999843 3444443
No 409
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=58.07 E-value=3.8 Score=39.68 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
...++++.||+|+|||..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999853
No 410
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=57.76 E-value=5.7 Score=34.82 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+++.|++|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999853
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=57.71 E-value=5.8 Score=35.53 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
+..+++.|++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568899999999998543
No 412
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=57.56 E-value=5 Score=34.55 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=11.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
+.-+++.|+.|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.56 E-value=6 Score=33.52 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+++.++.|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999854
No 414
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=57.51 E-value=5.6 Score=40.32 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=30.6
Q ss_pred CcccCcccCCCCHHHHHHHHHc-CC--CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA-GY--DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~-g~--~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.|-..|+++.-.+...+.|... -+ ..|.-++ ......+.+|+.||+|+|||+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 3456788876666666665532 00 0010000 00123467999999999999853
No 415
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.40 E-value=5.2 Score=35.49 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.4
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.+.-+.+.|++|||||+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 344577899999999984
No 416
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.35 E-value=8.6 Score=33.92 Aligned_cols=17 Identities=29% Similarity=0.174 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
.-+.+.|+.|||||+.+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999853
No 417
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.25 E-value=8.6 Score=34.28 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-cCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVTT-------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGR-GVE 447 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~-------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~~-Gld 447 (533)
+.++||.++++.-+..+++.+.+.. +..+..++|+.+..+... .+ ....+|+|+|. .+.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 4689999999999988888775322 677888899876433211 11 24678999995 2222 356
Q ss_pred CCCccEEEE
Q 009496 448 LLGVRQVII 456 (533)
Q Consensus 448 i~~v~~VI~ 456 (533)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777776
No 418
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.19 E-value=6 Score=34.86 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+++.|+.|||||+.+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 419
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=57.11 E-value=6.6 Score=33.40 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|+|||+
T Consensus 32 ~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SCEEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56667899999999998
No 420
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.10 E-value=8.2 Score=39.36 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
...++|+.||+|+|||..+-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 44589999999999998643
No 421
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=56.96 E-value=6.4 Score=34.88 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+.-+++.|+.|||||+..-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999998643
No 422
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=56.74 E-value=8.9 Score=40.53 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHhCCCcEEEEccCCCchhHHH
Q 009496 168 SALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 168 ~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.+..++.+++.+|+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4458889999999999999853
No 423
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.50 E-value=32 Score=33.39 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~-----~~Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.. ..+..+..++|+.+..+....+. ..+|+|+|.- + ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999998888887753 34678899999998766555443 4679999952 1 22355667
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777776
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=56.42 E-value=9.3 Score=36.64 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.4
Q ss_pred EEEEccCCCchhHH
Q 009496 175 LLVSANTGSGKTAS 188 (533)
Q Consensus 175 vli~a~TGsGKT~~ 188 (533)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999983
No 425
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=56.39 E-value=5.4 Score=35.75 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 566789999999999984
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.37 E-value=6.5 Score=38.66 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-.+|.||+|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999854
No 427
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.34 E-value=7.5 Score=34.53 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=16.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
-.+|.||+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHh
Confidence 468899999999985 34444444
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=56.03 E-value=6.1 Score=35.27 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 429
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.02 E-value=6.4 Score=34.79 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 430
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=55.93 E-value=49 Score=36.00 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=54.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHh-------cCCCCeEEEEEcCCchHHHHHHHH---------cCCceeecChHHHH
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLG-------KGLPFKTALVVGGDAMARQVYRIQ---------QGVELIVGTPGRLI 272 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~l~---------~~~~Iiv~Tp~~l~ 272 (533)
.+..+||.+|++.-+..+.+.+.+.. ...++.+..++|+.+...+...+. ....|||||
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT----- 376 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----- 376 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----
Confidence 35689999999999999888877522 224678888999887766544332 135799999
Q ss_pred HHHHcCCCCCCCeeEEEE
Q 009496 273 DLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 273 ~~l~~~~~~l~~i~~vVv 290 (533)
+.+.. .+++..+.+||-
T Consensus 377 ~iae~-GidIp~v~~VId 393 (773)
T 2xau_A 377 NIAET-SLTIDGIVYVVD 393 (773)
T ss_dssp THHHH-TCCCTTEEEEEE
T ss_pred cHHHh-CcCcCCeEEEEe
Confidence 45544 457888887774
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=55.86 E-value=6.5 Score=34.11 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.1
Q ss_pred EEEEccCCCchhHHH
Q 009496 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 vli~a~TGsGKT~~~ 189 (533)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 432
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=55.47 E-value=6.3 Score=34.55 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+.+.+++|||||+..
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 433
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.28 E-value=6.4 Score=34.69 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
.+.+.|+.|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999853
No 434
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=55.23 E-value=7 Score=38.47 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHH
Q 009496 174 SLLVSANTGSGKTASFLVPVISQ 196 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~ 196 (533)
-.++.|+||+|||.. +=++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 368999999999985 334443
No 435
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.12 E-value=7.6 Score=37.75 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=31.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH-HHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL-CIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L-~~Q~~~~~~~~ 233 (533)
.|.-+++.|++|+|||..++-.+...... ....+.+..++|+.-...+ ..++...+.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~----~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLP----GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSC----BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc----cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 45668999999999998544333221110 0001135568888754321 23344444443
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=55.11 E-value=7 Score=35.76 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 437
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=54.74 E-value=3.8 Score=39.28 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHH
Q 009496 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|.-+.+.+|+|||||+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 677889999999999983
No 438
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=54.62 E-value=7 Score=34.04 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHHH
Q 009496 175 LLVSANTGSGKTASFL 190 (533)
Q Consensus 175 vli~a~TGsGKT~~~l 190 (533)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 439
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=54.42 E-value=7.4 Score=35.87 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009496 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+..+.+.+++|||||+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999853
No 440
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.38 E-value=7.6 Score=39.21 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+++++.+|+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999854
No 441
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=59.29 E-value=2.7 Score=36.20 Aligned_cols=74 Identities=14% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHH---HHc-CCceeecChHHHHHHHHcCCCCCCC
Q 009496 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
.+.++||.++++..+..+.+.++.. ++.+..++|+.+....... ... ...|+|+| +.+. ..+++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAA-RGIDIPD 98 (170)
Confidence 3457999999999988877776654 5677777877654433222 222 36799999 3332 3456777
Q ss_pred eeEEEEec
Q 009496 285 IRMFVLDE 292 (533)
Q Consensus 285 i~~vVvDE 292 (533)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77777643
No 442
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=54.04 E-value=7 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+..+++.|+.|||||+.+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34468999999999998643
No 443
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=53.74 E-value=8.2 Score=34.70 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999998
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=53.69 E-value=7.2 Score=35.12 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.|+.|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 445
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=53.64 E-value=6 Score=41.78 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHH
Q 009496 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~vli~a~TGsGKT~~ 188 (533)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 446
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=53.43 E-value=12 Score=37.81 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHHHH
Q 009496 173 KSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ll 191 (533)
+.+++.+++|+|||+.+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999986543
No 447
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.17 E-value=17 Score=45.87 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHcCCCCCCHHHH-HHHH---HHhCCCcEEEEccCCCchhHHHH
Q 009496 142 LSQKLLQNIEAAGYDMPTPVQM-QAIP---SALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~-~~i~---~i~~g~~vli~a~TGsGKT~~~l 190 (533)
|.+.+.+.+.+.|+. |.+.+. +++. .+.....+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345566667777874 555443 3332 23356679999999999999764
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.05 E-value=7.4 Score=36.07 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHHH
Q 009496 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
.-++++|++|||||+.+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 357899999999998543
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.03 E-value=7.8 Score=36.01 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999998
No 450
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=52.81 E-value=8 Score=35.12 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|+-+.+.+|.|||||+
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 451
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=52.66 E-value=8.1 Score=35.31 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHH
Q 009496 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~ 188 (533)
+.-+++.|+.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999984
No 452
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=52.45 E-value=8.1 Score=35.57 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 453
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=52.42 E-value=11 Score=35.86 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.++-+.+.++.|+|||+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557778999999998543
No 454
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=52.24 E-value=8 Score=36.32 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999998
No 455
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=52.20 E-value=4.3 Score=35.14 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+.+.+++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999843
No 456
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.15 E-value=5.5 Score=36.80 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+++.|++|||||+.+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.89 E-value=8.3 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+.+.|++|||||++.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998643
No 458
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=51.65 E-value=29 Score=35.57 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c----ccc-C-CCCC
Q 009496 381 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L----GRG-V-ELLG 450 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~----~~G-l-di~~ 450 (533)
++++||.++++.-+....+.+... .++.+..+||+.+...+...+. ...+|+|+|.- + ..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999998888888777632 3889999999987655433222 23789999972 2 222 3 5667
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888876
No 459
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=51.64 E-value=15 Score=34.04 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=30.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|..+++.+.+|+|||+ +.+-.+...+. .+-+++|++-. +-..++...++.+
T Consensus 20 ~gs~~li~g~p~~~~~~-l~~qfl~~g~~---------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKD-ILFYILSRKLK---------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHH-HHHHHHHHHHH---------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHH-HHHHHHHHHHH---------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 45678888788888883 44444333332 35668887754 3335555566555
No 460
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=51.50 E-value=13 Score=37.24 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009496 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
++-+++.++.|+|||+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3446778999999998544
No 461
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=51.50 E-value=8.3 Score=34.88 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999998
No 462
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=51.23 E-value=14 Score=31.99 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhHH
Q 009496 174 SLLVSANTGSGKTAS 188 (533)
Q Consensus 174 ~vli~a~TGsGKT~~ 188 (533)
-+++.++.|||||+.
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 477899999999974
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=50.76 E-value=8.9 Score=35.52 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 464
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.72 E-value=11 Score=35.90 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009496 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ll 191 (533)
++-+++.+++|+|||+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567789999999985443
No 465
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=50.71 E-value=7.6 Score=35.65 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999998
No 466
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=50.53 E-value=9 Score=35.75 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778899999999998
No 467
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=50.34 E-value=9.4 Score=36.56 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 009496 172 GKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
|.-+.|.|++|||||+. +-++..++
T Consensus 90 g~ivgI~G~sGsGKSTL--~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTT--ARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CEEEEEECCCCchHHHH--HHHHHhhc
Confidence 44577899999999984 33444443
No 468
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.15 E-value=9.3 Score=34.96 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 469
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.00 E-value=6.7 Score=40.07 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 009496 173 KSLLVSANTGSGKTASF 189 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ 189 (533)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=49.96 E-value=2.2 Score=49.79 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009496 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
+++-+++|+||+=.-+|...+..+...+..+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 4456789999999888877676666666555
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=49.80 E-value=9.9 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 472
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=49.76 E-value=9.1 Score=34.12 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+.+.|+.|||||+..
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=49.75 E-value=8.3 Score=33.48 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.|+-+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56779999999999997644
No 474
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=49.57 E-value=28 Score=34.08 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-ccCCCCC
Q 009496 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG-RGVELLG 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~-~Gldi~~ 450 (533)
.+.++||.++++.-+..+++.+.. ..+..+..++|+..... ....+..+..+|+|+|. .+. ..++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 456899999999998888888763 23677778888876443 34455667889999995 222 3356666
Q ss_pred ccEEEE
Q 009496 451 VRQVII 456 (533)
Q Consensus 451 v~~VI~ 456 (533)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=49.53 E-value=13 Score=40.57 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
...++|+.||+|+|||+.+-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 44589999999999998654
No 476
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=49.52 E-value=10 Score=41.07 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 009496 165 AIPSALSGKS--LLVSANTGSGKTASF 189 (533)
Q Consensus 165 ~i~~i~~g~~--vli~a~TGsGKT~~~ 189 (533)
.+..++.|.| ++..|+||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788887 566899999999863
No 477
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=49.52 E-value=9.6 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999998
No 478
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=49.45 E-value=17 Score=32.49 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 009496 170 LSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~ 189 (533)
+.|.-+++.|+.|||||+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 45677889999999999854
No 479
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=49.33 E-value=9.2 Score=36.82 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ll 191 (533)
.++.+++.+|+|+|||..++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456679999999999985443
No 480
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=49.10 E-value=9.9 Score=35.24 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 67778899999999998
No 481
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=49.10 E-value=9.9 Score=35.07 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778899999999998
No 482
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=48.80 E-value=9.9 Score=35.54 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999998
No 483
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=48.56 E-value=10 Score=35.33 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 66778899999999998
No 484
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=48.43 E-value=9.6 Score=36.08 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+.|.|++|||||+.+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 485
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=48.11 E-value=23 Score=35.48 Aligned_cols=67 Identities=4% Similarity=0.009 Sum_probs=45.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
+.++||.+|++.-+..+++.+++. +.++..++|+ .....+..... ..+|+||| +.+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 456999999999999888888775 5677777776 33333444444 48999999 45544 34555 4444
No 486
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.05 E-value=9.4 Score=41.71 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=34.0
Q ss_pred CcccCcccCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009496 132 APILSFSSCSLSQKLLQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.|-..|++.+.-+...+.|... -+...+|.+..-+ -+...+.+|+.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 4556888888888888777654 2211111111000 0112356999999999999743
No 487
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=47.99 E-value=10 Score=35.27 Aligned_cols=17 Identities=59% Similarity=0.943 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 66778899999999998
No 488
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=47.94 E-value=10 Score=35.01 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.||.|||||+
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778899999999998
No 489
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.81 E-value=10 Score=35.57 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhH
Q 009496 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|.-+.+.+|.|||||+
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778899999999998
No 490
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=47.74 E-value=22 Score=42.19 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccH
Q 009496 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|+.+++.+++|+|||..++-.++..+. .+.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~----------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH----------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh----------CCCceEEEEecC
Confidence 4678999999999999865554444332 245688887543
No 491
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=47.32 E-value=10 Score=34.79 Aligned_cols=17 Identities=35% Similarity=0.343 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
-+.|.|+.|||||+.+-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 492
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=46.73 E-value=26 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=13.3
Q ss_pred EEEccCCCchhHHHHHHHH
Q 009496 176 LVSANTGSGKTASFLVPVI 194 (533)
Q Consensus 176 li~a~TGsGKT~~~llp~l 194 (533)
+..+.-|.|||+.+...+.
T Consensus 148 v~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp EECSSTTSSHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHH
Confidence 3456889999987655443
No 493
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=46.71 E-value=12 Score=33.90 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009496 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
.+..+.+.++.|||||+.+-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45568899999999998543
No 494
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=46.37 E-value=7.1 Score=24.36 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=10.2
Q ss_pred CCeeeeeccccccc
Q 009496 36 EPKCVICGRYGEYI 49 (533)
Q Consensus 36 ~~~c~~c~~~~~~~ 49 (533)
...|+.||..||..
T Consensus 21 ~~~C~~Cg~~GH~~ 34 (39)
T 2a51_A 21 QEGCWNCGSKEHRF 34 (39)
T ss_dssp CSSCTTTCCSSSCT
T ss_pred CCccccCCCCCCcc
Confidence 45788888888854
No 495
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=45.95 E-value=4.8 Score=26.68 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=5.3
Q ss_pred eeeeecccccc
Q 009496 38 KCVICGRYGEY 48 (533)
Q Consensus 38 ~c~~c~~~~~~ 48 (533)
.|+.||..||+
T Consensus 8 ~C~~Cg~~GH~ 18 (49)
T 2ec7_A 8 RCWNCGKEGHS 18 (49)
T ss_dssp BCTTTCCBTCC
T ss_pred eeeecCCCCcC
Confidence 35555555553
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=45.91 E-value=11 Score=32.92 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q 009496 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+.+.++.|||||+.+-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998543
No 497
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=45.75 E-value=29 Score=37.14 Aligned_cols=68 Identities=3% Similarity=0.046 Sum_probs=46.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEE
Q 009496 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 288 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~v 288 (533)
+.++||.+|+++-+..+++.++.. ++++..++|. .....+..... ..+|+||| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 567999999999988877776654 6777887774 33333333333 47899999 44443 45677 7776
Q ss_pred E
Q 009496 289 V 289 (533)
Q Consensus 289 V 289 (533)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 498
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=45.50 E-value=11 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.357 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 009496 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
-+++.|++|||||+.+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 499
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=45.22 E-value=12 Score=34.27 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.0
Q ss_pred CcEEEEccCCCchhH
Q 009496 173 KSLLVSANTGSGKTA 187 (533)
Q Consensus 173 ~~vli~a~TGsGKT~ 187 (533)
.-+.+.||.|||||+
T Consensus 25 e~~~liG~nGsGKST 39 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV 39 (240)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 446789999999998
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=44.82 E-value=14 Score=32.84 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 009496 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+.+.+++|||||+..
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999854
Done!