Query 009499
Match_columns 533
No_of_seqs 259 out of 1812
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 1.4E-15 4.8E-20 128.5 7.0 78 443-530 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.5 6.6E-15 2.3E-19 119.4 4.0 54 478-531 20-73 (75)
3 2ep4_A Ring finger protein 24; 99.5 2.2E-14 7.5E-19 115.7 5.8 53 478-530 12-64 (74)
4 2kiz_A E3 ubiquitin-protein li 99.5 2.7E-14 9.2E-19 113.7 6.1 54 477-530 10-63 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.5 1.7E-14 5.7E-19 109.8 4.0 51 479-529 3-54 (55)
6 2ect_A Ring finger protein 126 99.5 2.9E-14 9.9E-19 116.1 4.6 54 478-531 12-65 (78)
7 1v87_A Deltex protein 2; ring- 99.4 3.7E-13 1.3E-17 117.2 7.1 51 480-530 24-94 (114)
8 2ecl_A Ring-box protein 2; RNF 99.4 1.4E-13 4.9E-18 113.9 3.9 52 479-530 13-76 (81)
9 2ecm_A Ring finger and CHY zin 99.4 2.2E-13 7.4E-18 103.4 4.6 51 479-529 3-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.4 2.2E-13 7.7E-18 108.4 3.3 54 478-531 7-64 (71)
11 2ea6_A Ring finger protein 4; 99.4 4.3E-13 1.5E-17 105.9 4.7 54 477-530 11-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.3 6.8E-13 2.3E-17 116.0 4.3 51 479-529 35-100 (106)
13 2xeu_A Ring finger protein 4; 99.3 5.9E-13 2E-17 103.5 3.2 52 480-531 2-57 (64)
14 2ecn_A Ring finger protein 141 99.3 9.5E-13 3.3E-17 104.9 3.7 50 478-531 12-61 (70)
15 2d8s_A Cellular modulator of i 99.3 1.4E-12 4.6E-17 108.6 4.5 55 476-531 10-71 (80)
16 2d8t_A Dactylidin, ring finger 99.3 1.1E-12 3.9E-17 105.2 3.7 49 478-529 12-60 (71)
17 2djb_A Polycomb group ring fin 99.3 3E-12 1E-16 102.9 5.3 52 478-531 12-63 (72)
18 2ysl_A Tripartite motif-contai 99.3 5E-12 1.7E-16 101.2 6.1 52 477-531 16-70 (73)
19 1chc_A Equine herpes virus-1 r 99.3 2.4E-12 8.3E-17 101.9 4.0 49 479-529 3-51 (68)
20 2ct2_A Tripartite motif protei 99.2 6.1E-12 2.1E-16 104.0 6.0 53 478-530 12-68 (88)
21 2csy_A Zinc finger protein 183 99.2 5.7E-12 1.9E-16 103.5 4.9 50 477-529 11-60 (81)
22 4a0k_B E3 ubiquitin-protein li 99.2 1.1E-12 3.9E-17 116.6 0.6 53 478-530 45-112 (117)
23 2ecy_A TNF receptor-associated 99.2 7.5E-12 2.6E-16 98.8 5.1 51 478-531 12-63 (66)
24 2yur_A Retinoblastoma-binding 99.2 6.7E-12 2.3E-16 101.7 4.3 50 478-530 12-64 (74)
25 2ecw_A Tripartite motif-contai 99.2 3.6E-11 1.2E-15 98.2 6.7 51 478-531 16-72 (85)
26 4ayc_A E3 ubiquitin-protein li 99.2 7E-12 2.4E-16 113.4 2.3 47 480-529 52-98 (138)
27 2ysj_A Tripartite motif-contai 99.2 4E-11 1.4E-15 93.7 6.2 45 477-524 16-63 (63)
28 1t1h_A Gspef-atpub14, armadill 99.1 2.3E-11 7.8E-16 98.9 4.8 50 478-530 5-55 (78)
29 2ecv_A Tripartite motif-contai 99.1 4.2E-11 1.4E-15 97.8 5.5 50 478-530 16-71 (85)
30 2egp_A Tripartite motif-contai 99.1 1.3E-11 4.5E-16 100.1 2.3 50 478-530 9-65 (79)
31 4ap4_A E3 ubiquitin ligase RNF 99.1 2E-11 7E-16 107.5 3.5 52 479-530 5-60 (133)
32 3ztg_A E3 ubiquitin-protein li 99.1 6.6E-11 2.3E-15 99.1 5.7 50 477-529 9-61 (92)
33 3lrq_A E3 ubiquitin-protein li 99.1 1.6E-11 5.5E-16 105.2 1.8 50 479-530 20-70 (100)
34 2ecj_A Tripartite motif-contai 99.1 7E-11 2.4E-15 90.2 4.6 44 478-524 12-58 (58)
35 2y43_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 101.9 2.6 49 480-530 21-69 (99)
36 2ckl_A Polycomb group ring fin 99.1 6.6E-11 2.3E-15 102.3 3.7 50 479-530 13-62 (108)
37 1g25_A CDK-activating kinase a 99.0 1.2E-10 4.2E-15 91.5 4.5 51 480-530 2-55 (65)
38 2ct0_A Non-SMC element 1 homol 99.0 1.5E-10 5.3E-15 95.0 4.3 51 478-530 12-64 (74)
39 3fl2_A E3 ubiquitin-protein li 99.0 8.1E-11 2.8E-15 104.2 2.8 49 479-530 50-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 1.1E-10 3.8E-15 102.7 2.8 53 478-530 69-125 (133)
41 1jm7_A BRCA1, breast cancer ty 99.0 2.4E-10 8.2E-15 98.6 4.1 47 481-530 21-70 (112)
42 2kr4_A Ubiquitin conjugation f 99.0 4.2E-10 1.4E-14 94.1 4.8 50 478-530 11-60 (85)
43 3l11_A E3 ubiquitin-protein li 99.0 8.2E-11 2.8E-15 102.7 0.4 49 478-529 12-61 (115)
44 2ckl_B Ubiquitin ligase protei 99.0 2.4E-10 8.1E-15 106.0 3.5 50 479-530 52-102 (165)
45 1z6u_A NP95-like ring finger p 98.9 3.7E-10 1.3E-14 104.0 4.1 49 480-531 77-126 (150)
46 1wgm_A Ubiquitin conjugation f 98.9 7.7E-10 2.6E-14 95.1 5.8 50 478-530 19-69 (98)
47 3hct_A TNF receptor-associated 98.9 2.3E-10 7.9E-15 100.6 2.4 50 478-530 15-65 (118)
48 2kre_A Ubiquitin conjugation f 98.9 8.7E-10 3E-14 95.1 5.4 50 478-530 26-75 (100)
49 1bor_A Transcription factor PM 98.9 2.8E-10 9.7E-15 87.6 0.9 48 478-531 3-50 (56)
50 1rmd_A RAG1; V(D)J recombinati 98.9 4.2E-10 1.4E-14 98.3 1.9 48 480-530 22-70 (116)
51 3knv_A TNF receptor-associated 98.9 5.6E-10 1.9E-14 101.9 2.5 49 478-529 28-77 (141)
52 2vje_A E3 ubiquitin-protein li 98.8 9.9E-10 3.4E-14 87.0 2.3 48 479-529 6-56 (64)
53 1e4u_A Transcriptional repress 98.8 3.2E-09 1.1E-13 87.7 5.0 53 478-530 8-62 (78)
54 2y1n_A E3 ubiquitin-protein li 98.8 1.8E-09 6.1E-14 113.5 4.1 48 480-530 331-379 (389)
55 1jm7_B BARD1, BRCA1-associated 98.7 1.3E-09 4.6E-14 95.6 0.6 46 480-530 21-67 (117)
56 2vje_B MDM4 protein; proto-onc 98.7 2.5E-09 8.6E-14 84.4 1.8 48 479-529 5-55 (63)
57 2c2l_A CHIP, carboxy terminus 98.7 5E-09 1.7E-13 103.1 3.8 50 478-530 205-255 (281)
58 4ic3_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 86.2 1.2 43 480-529 23-66 (74)
59 2yu4_A E3 SUMO-protein ligase 98.7 6.9E-09 2.3E-13 88.1 3.0 47 478-527 4-59 (94)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.6 1.6E-08 5.4E-13 79.5 3.9 50 478-530 3-59 (60)
61 3hcs_A TNF receptor-associated 98.6 9.6E-09 3.3E-13 95.4 2.4 50 478-530 15-65 (170)
62 3k1l_B Fancl; UBC, ring, RWD, 98.6 5.5E-09 1.9E-13 107.8 0.6 52 478-529 305-372 (381)
63 2ea5_A Cell growth regulator w 98.5 6E-08 2.1E-12 77.8 4.1 48 476-530 10-58 (68)
64 1wim_A KIAA0161 protein; ring 98.5 3E-08 1E-12 83.6 1.6 49 479-527 3-61 (94)
65 2f42_A STIP1 homology and U-bo 98.5 6.2E-08 2.1E-12 92.0 3.6 50 478-530 103-153 (179)
66 2ecg_A Baculoviral IAP repeat- 98.5 5.5E-08 1.9E-12 78.8 2.7 43 481-530 25-68 (75)
67 2yho_A E3 ubiquitin-protein li 98.3 6.3E-08 2.2E-12 79.8 0.4 43 480-529 17-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 1.2E-07 4.2E-12 74.6 2.0 46 482-530 4-50 (61)
69 3htk_C E3 SUMO-protein ligase 98.3 1.7E-07 5.7E-12 93.8 3.3 50 478-529 178-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 2E-07 6.7E-12 96.9 0.7 44 479-529 293-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.3E-05 4.4E-10 69.0 2.6 46 483-530 3-49 (101)
72 3nw0_A Non-structural maintena 97.5 6.9E-05 2.3E-09 74.0 4.7 48 480-529 179-228 (238)
73 2ko5_A Ring finger protein Z; 95.1 0.0068 2.3E-07 51.6 1.5 47 479-530 26-73 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.015 5.2E-07 48.8 2.5 36 480-515 2-38 (101)
75 2lri_C Autoimmune regulator; Z 93.9 0.047 1.6E-06 43.4 3.8 49 478-529 9-61 (66)
76 1we9_A PHD finger family prote 90.4 0.058 2E-06 42.0 0.3 50 478-527 3-58 (64)
77 1wil_A KIAA1045 protein; ring 89.9 0.27 9.4E-06 41.0 3.9 36 478-514 12-47 (89)
78 2k16_A Transcription initiatio 89.3 0.08 2.7E-06 42.5 0.4 53 478-530 15-71 (75)
79 2l5u_A Chromodomain-helicase-D 87.1 0.35 1.2E-05 37.5 2.7 47 478-527 8-58 (61)
80 1mm2_A MI2-beta; PHD, zinc fin 86.9 0.14 4.9E-06 39.7 0.4 50 478-530 6-59 (61)
81 3m62_A Ubiquitin conjugation f 85.8 0.18 6E-06 58.5 0.6 50 478-530 888-938 (968)
82 1wem_A Death associated transc 85.5 0.31 1.1E-05 39.2 1.7 49 479-528 14-71 (76)
83 1fp0_A KAP-1 corepressor; PHD 83.2 0.4 1.4E-05 40.3 1.5 50 477-529 21-74 (88)
84 1wep_A PHF8; structural genomi 82.1 1 3.5E-05 36.5 3.5 50 478-528 9-64 (79)
85 1f62_A Transcription factor WS 82.0 0.6 2.1E-05 34.5 1.9 44 483-526 2-49 (51)
86 2yql_A PHD finger protein 21A; 81.8 0.17 5.8E-06 38.5 -1.3 46 478-526 6-55 (56)
87 2ysm_A Myeloid/lymphoid or mix 81.7 0.37 1.3E-05 41.4 0.7 39 478-516 4-42 (111)
88 1weu_A Inhibitor of growth fam 80.9 0.69 2.4E-05 39.0 2.1 47 479-529 34-87 (91)
89 2puy_A PHD finger protein 21A; 80.8 0.12 4.2E-06 39.8 -2.4 48 479-529 3-54 (60)
90 2l43_A N-teminal domain from h 80.8 0.63 2.1E-05 38.8 1.8 51 478-528 22-76 (88)
91 1wen_A Inhibitor of growth fam 80.7 0.85 2.9E-05 36.5 2.5 48 478-529 13-67 (71)
92 3i2d_A E3 SUMO-protein ligase 80.2 0.76 2.6E-05 48.0 2.6 48 481-530 249-300 (371)
93 1wew_A DNA-binding family prot 80.2 0.7 2.4E-05 37.5 1.8 50 479-529 14-74 (78)
94 2lv9_A Histone-lysine N-methyl 79.8 0.53 1.8E-05 39.9 1.1 47 480-527 27-76 (98)
95 2ku3_A Bromodomain-containing 78.2 0.89 3E-05 36.5 1.9 50 477-526 12-65 (71)
96 2yt5_A Metal-response element- 78.1 0.46 1.6E-05 37.0 0.1 53 478-530 3-64 (66)
97 4fo9_A E3 SUMO-protein ligase 77.3 1.2 4.2E-05 46.2 3.1 48 481-530 215-266 (360)
98 2e6r_A Jumonji/ARID domain-con 76.1 0.25 8.6E-06 41.6 -2.0 50 477-526 12-65 (92)
99 1xwh_A Autoimmune regulator; P 75.2 0.53 1.8E-05 37.0 -0.3 47 478-527 5-55 (66)
100 3o70_A PHD finger protein 13; 73.7 0.59 2E-05 37.2 -0.4 48 478-526 16-66 (68)
101 2vpb_A Hpygo1, pygopus homolog 73.7 2.3 7.8E-05 33.5 3.1 49 478-526 5-65 (65)
102 2cs3_A Protein C14ORF4, MY039 72.6 4.6 0.00016 33.5 4.7 40 478-517 12-52 (93)
103 3v43_A Histone acetyltransfera 72.6 3.7 0.00013 35.3 4.5 33 480-512 4-42 (112)
104 2xb1_A Pygopus homolog 2, B-ce 72.2 0.69 2.4E-05 39.8 -0.3 48 481-528 3-62 (105)
105 2ri7_A Nucleosome-remodeling f 71.2 0.99 3.4E-05 41.5 0.5 47 479-526 6-58 (174)
106 1wee_A PHD finger family prote 68.2 0.7 2.4E-05 36.8 -1.1 49 479-528 14-67 (72)
107 2kgg_A Histone demethylase jar 67.3 1.6 5.5E-05 32.6 0.8 43 483-525 4-52 (52)
108 1weo_A Cellulose synthase, cat 66.7 9.4 0.00032 32.1 5.4 52 478-529 13-69 (93)
109 2d8v_A Zinc finger FYVE domain 66.3 2.8 9.6E-05 33.4 2.1 34 478-515 5-39 (67)
110 2lbm_A Transcriptional regulat 64.5 6.7 0.00023 35.6 4.5 48 477-527 59-117 (142)
111 1wev_A Riken cDNA 1110020M19; 64.1 0.49 1.7E-05 39.4 -2.8 50 479-528 14-73 (88)
112 3v43_A Histone acetyltransfera 60.2 2.1 7.2E-05 36.9 0.4 45 482-526 62-111 (112)
113 2rsd_A E3 SUMO-protein ligase 59.6 0.72 2.5E-05 36.4 -2.5 46 480-526 9-64 (68)
114 2kwj_A Zinc finger protein DPF 59.1 0.66 2.2E-05 40.3 -3.1 52 482-533 59-114 (114)
115 2vnf_A ING 4, P29ING4, inhibit 57.8 1.2 4E-05 34.5 -1.5 44 479-526 8-58 (60)
116 3c6w_A P28ING5, inhibitor of g 57.2 1.3 4.3E-05 34.2 -1.4 44 479-526 7-57 (59)
117 2kwj_A Zinc finger protein DPF 52.1 5.8 0.0002 34.2 1.8 33 482-514 2-41 (114)
118 3ql9_A Transcriptional regulat 51.6 11 0.00038 33.6 3.6 48 477-527 53-111 (129)
119 2ysm_A Myeloid/lymphoid or mix 50.3 2.9 9.8E-05 35.7 -0.4 47 483-529 56-106 (111)
120 2jvx_A NF-kappa-B essential mo 48.1 1.6 5.3E-05 29.2 -1.9 15 518-532 3-17 (28)
121 1y02_A CARP2, FYVE-ring finger 48.1 2 6.8E-05 38.0 -1.8 49 478-526 16-65 (120)
122 3kv5_D JMJC domain-containing 47.2 3.8 0.00013 44.2 -0.2 45 482-527 38-88 (488)
123 3ask_A E3 ubiquitin-protein li 47.1 3.9 0.00013 39.9 -0.1 47 481-527 174-225 (226)
124 2e6s_A E3 ubiquitin-protein li 46.8 3.7 0.00013 33.3 -0.3 46 481-526 26-76 (77)
125 2pv0_B DNA (cytosine-5)-methyl 46.6 12 0.0004 39.3 3.4 47 477-526 89-147 (386)
126 2g6q_A Inhibitor of growth pro 45.7 2.5 8.5E-05 32.9 -1.4 44 480-527 10-60 (62)
127 4gne_A Histone-lysine N-methyl 45.6 8.3 0.00028 33.3 1.8 44 477-526 11-61 (107)
128 3asl_A E3 ubiquitin-protein li 44.8 3.2 0.00011 33.0 -0.9 45 483-527 20-69 (70)
129 1z60_A TFIIH basal transcripti 43.9 9.1 0.00031 29.7 1.6 43 482-524 16-58 (59)
130 3shb_A E3 ubiquitin-protein li 43.8 2.7 9.3E-05 34.2 -1.5 44 483-526 28-76 (77)
131 3mpx_A FYVE, rhogef and PH dom 41.3 5.6 0.00019 41.1 0.0 51 478-528 372-430 (434)
132 1z2q_A LM5-1; membrane protein 41.0 12 0.00043 30.4 2.1 51 478-528 18-77 (84)
133 3a1b_A DNA (cytosine-5)-methyl 40.9 17 0.0006 33.5 3.2 47 476-526 74-133 (159)
134 3o7a_A PHD finger protein 13 v 39.1 3.9 0.00013 30.4 -1.2 41 486-526 8-51 (52)
135 2yw8_A RUN and FYVE domain-con 38.4 14 0.00048 29.9 2.0 52 478-529 16-74 (82)
136 2jmi_A Protein YNG1, ING1 homo 38.2 4.9 0.00017 33.7 -0.8 44 479-526 24-75 (90)
137 1x4u_A Zinc finger, FYVE domai 38.0 15 0.00053 29.8 2.2 38 478-515 11-49 (84)
138 1wfk_A Zinc finger, FYVE domai 37.3 18 0.0006 29.9 2.5 38 478-515 6-44 (88)
139 3t7l_A Zinc finger FYVE domain 37.0 12 0.0004 31.0 1.3 37 479-515 18-55 (90)
140 3kqi_A GRC5, PHD finger protei 35.9 12 0.00042 29.7 1.2 46 482-527 10-61 (75)
141 2cu8_A Cysteine-rich protein 2 35.3 14 0.00048 28.6 1.5 40 480-529 8-47 (76)
142 1zbd_B Rabphilin-3A; G protein 35.2 11 0.00038 33.7 0.9 34 479-512 53-88 (134)
143 1joc_A EEA1, early endosomal a 34.1 14 0.00047 32.5 1.3 37 479-515 67-104 (125)
144 2gmg_A Hypothetical protein PF 33.0 9.4 0.00032 33.0 0.1 27 499-530 70-96 (105)
145 2dj7_A Actin-binding LIM prote 32.9 17 0.00058 28.9 1.6 41 479-529 13-53 (80)
146 2co8_A NEDD9 interacting prote 32.8 17 0.00057 28.9 1.6 40 479-528 13-52 (82)
147 2o35_A Hypothetical protein DU 32.5 15 0.00051 31.5 1.2 12 506-517 43-54 (105)
148 3fyb_A Protein of unknown func 32.3 15 0.00052 31.4 1.2 12 506-517 42-53 (104)
149 2pk7_A Uncharacterized protein 32.2 12 0.00041 29.8 0.5 19 511-529 1-19 (69)
150 1vfy_A Phosphatidylinositol-3- 32.2 21 0.00071 28.2 2.0 33 482-514 12-45 (73)
151 1dvp_A HRS, hepatocyte growth 32.0 16 0.00056 34.7 1.6 36 480-515 160-196 (220)
152 3zyq_A Hepatocyte growth facto 30.9 17 0.0006 34.8 1.6 49 480-528 163-220 (226)
153 1iml_A CRIP, cysteine rich int 30.4 11 0.00037 29.3 0.1 44 480-527 26-70 (76)
154 2zet_C Melanophilin; complex, 30.0 15 0.0005 33.7 0.8 46 480-526 67-116 (153)
155 2jny_A Uncharacterized BCR; st 29.4 10 0.00035 30.1 -0.3 19 511-529 3-21 (67)
156 1m3v_A FLIN4, fusion of the LI 27.2 42 0.0015 28.5 3.3 49 482-530 33-81 (122)
157 1x4i_A Inhibitor of growth pro 27.0 24 0.00083 27.8 1.5 44 480-527 5-55 (70)
158 1x63_A Skeletal muscle LIM-pro 26.0 32 0.0011 26.8 2.2 40 481-529 15-54 (82)
159 1x64_A Alpha-actinin-2 associa 25.7 48 0.0016 26.4 3.2 40 479-529 23-62 (89)
160 2xjy_A Rhombotin-2; oncoprotei 25.6 39 0.0013 28.8 2.8 48 482-529 30-77 (131)
161 1zfo_A LAsp-1; LIM domain, zin 25.4 15 0.00052 24.3 0.1 27 482-510 4-30 (31)
162 1x62_A C-terminal LIM domain p 25.0 30 0.001 27.0 1.8 39 479-528 13-51 (79)
163 1wyh_A SLIM 2, skeletal muscle 24.1 37 0.0013 25.7 2.1 28 482-510 6-33 (72)
164 2dar_A PDZ and LIM domain prot 23.9 32 0.0011 27.6 1.7 39 480-529 24-62 (90)
165 2k1a_A Integrin alpha-IIB; sin 22.4 24 0.00082 25.6 0.6 9 143-151 34-42 (42)
166 3f6q_B LIM and senescent cell 22.3 33 0.0011 25.7 1.5 41 480-529 10-50 (72)
167 2a20_A Regulating synaptic mem 22.3 5.8 0.0002 30.9 -2.8 49 478-526 6-59 (62)
168 3pwf_A Rubrerythrin; non heme 22.2 29 0.001 32.0 1.3 22 499-527 141-162 (170)
169 1x4k_A Skeletal muscle LIM-pro 22.1 41 0.0014 25.4 2.0 28 482-510 6-33 (72)
170 2l3k_A Rhombotin-2, linker, LI 21.9 23 0.00079 30.3 0.5 35 481-516 36-70 (123)
171 1g47_A Pinch protein; LIM doma 21.4 46 0.0016 25.5 2.1 42 479-529 9-50 (77)
172 2jr6_A UPF0434 protein NMA0874 21.4 12 0.00039 29.8 -1.4 18 512-529 2-19 (68)
173 2cor_A Pinch protein; LIM doma 21.3 40 0.0014 26.5 1.8 40 479-529 13-52 (79)
174 3mjh_B Early endosome antigen 21.1 9.5 0.00033 26.4 -1.7 16 480-495 4-19 (34)
175 1m3v_A FLIN4, fusion of the LI 21.1 73 0.0025 27.0 3.6 40 480-529 4-43 (122)
176 2kpi_A Uncharacterized protein 20.9 12 0.00041 28.5 -1.3 18 512-529 4-21 (56)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=128.49 Aligned_cols=78 Identities=23% Similarity=0.492 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHhhcceeeecccccccccCCcCCCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCc
Q 009499 443 NVNTGLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCP 522 (533)
Q Consensus 443 ~v~~glSee~I~~~L~~~~~~ss~~~~~~ee~~~~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCP 522 (533)
....+++++.| +.|+..++... ....+++..|+||+++|..++.+..|+|+|.||..||++||+.+.+||
T Consensus 12 ~~~~~~s~~~i-~~lp~~~~~~~---------~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP 81 (91)
T 2l0b_A 12 VANPPASKESI-DALPEILVTED---------HGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCP 81 (91)
T ss_dssp SCCCCCCHHHH-HTSCEEECCTT---------CSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCT
T ss_pred cCCCCCCHHHH-HhCCCeeeccc---------ccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCc
Confidence 45578899988 55666654422 122456788999999999999899999999999999999999999999
Q ss_pred ccccCcCC
Q 009499 523 ICKSEALA 530 (533)
Q Consensus 523 vCR~~l~~ 530 (533)
+||+++.+
T Consensus 82 ~Cr~~~~~ 89 (91)
T 2l0b_A 82 VCRCMFPP 89 (91)
T ss_dssp TTCCBSSC
T ss_pred CcCccCCC
Confidence 99998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-15 Score=119.38 Aligned_cols=54 Identities=33% Similarity=0.938 Sum_probs=49.6
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
..++..|+||+++|..++.+..|+|+|.||..||++||+.+.+||+||+++.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 456788999999999999899999999999999999999999999999988764
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=115.69 Aligned_cols=53 Identities=34% Similarity=0.921 Sum_probs=48.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..++..|+||+++|..++.+..|+|+|.||..||.+|++.+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45678999999999999889999999999999999999999999999998865
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=113.67 Aligned_cols=54 Identities=30% Similarity=0.801 Sum_probs=48.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
...++..|+||++.|..++.+..|+|+|.||..||.+|++.+.+||+||+++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 355678899999999988888999999999999999999999999999998754
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.7e-14 Score=109.80 Aligned_cols=51 Identities=31% Similarity=0.847 Sum_probs=46.7
Q ss_pred CCCCcccccccccCCCCceEEeC-CCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLD-CDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~Lp-CgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
+++..|+||+++|..++.+..++ |+|.||..||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=2.9e-14 Score=116.13 Aligned_cols=54 Identities=30% Similarity=0.773 Sum_probs=49.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
..++..|+||++.|..++.+..|+|+|.||..||.+|++.+.+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 456789999999999988888999999999999999999999999999988654
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.39 E-value=3.7e-13 Score=117.17 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=41.7
Q ss_pred CCCcccccccccCCCC---------------ceEEeCCCChhhHHHHHHHH-----hcCCCCcccccCcCC
Q 009499 480 EPGSCIICQEDYRDNE---------------KIGTLDCDHEYHAECLKKWL-----FIKNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e---------------~v~~LpCgH~FH~~CI~qWL-----~~k~sCPvCR~~l~~ 530 (533)
.++.|+|||++|..+. .+..++|+|.||..||.+|| +.+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997653 33467999999999999999 457799999987754
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=113.91 Aligned_cols=52 Identities=27% Similarity=0.777 Sum_probs=41.9
Q ss_pred CCCCcccccccccCC-----------CCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRD-----------NEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~-----------~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.+++.|+||+++|.+ ++.++.+ +|+|.||.+||++||+.+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 355667777777754 4545566 599999999999999999999999998764
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.38 E-value=2.2e-13 Score=103.43 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=44.5
Q ss_pred CCCCcccccccccCCC-CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDN-EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~-e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.++..|+||+++|.+. +.+..++|+|.||..||++|++.+..||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999999764 45677899999999999999999999999998764
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.2e-13 Score=108.44 Aligned_cols=54 Identities=28% Similarity=0.629 Sum_probs=46.7
Q ss_pred CCCCCcccccccccCCC----CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDN----EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~----e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
.+++..|+||++.|.+. +.+..++|||.||..||.+|++.+.+||+||+++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 45678999999999763 4557789999999999999999999999999988653
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-13 Score=105.90 Aligned_cols=54 Identities=28% Similarity=0.645 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccCCC----CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 477 KDQEPGSCIICQEDYRDN----EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~----e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
...+...|+||++.|.+. +.+..++|||.||..||++|++.+..||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999999864 345778999999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=6.8e-13 Score=115.97 Aligned_cols=51 Identities=27% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCCC---------------ceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNE---------------KIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e---------------~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.+++.|+||++.|...- .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 45688999999998641 3567799999999999999999999999999854
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.31 E-value=5.9e-13 Score=103.55 Aligned_cols=52 Identities=29% Similarity=0.645 Sum_probs=45.0
Q ss_pred CCCcccccccccCCC----CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 480 EPGSCIICQEDYRDN----EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 480 ee~~C~ICLEey~~~----e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
++..|+||++.+.+. +.+..++|||.||..||++|++.+..||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 457899999999763 4457789999999999999999999999999988654
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.5e-13 Score=104.93 Aligned_cols=50 Identities=28% Similarity=0.707 Sum_probs=44.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
..+...|+||++.+.+ ..++|+|.||..||.+|++.+..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4567899999999876 6789999999999999999999999999988654
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=108.57 Aligned_cols=55 Identities=25% Similarity=0.619 Sum_probs=46.2
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCC-----ChhhHHHHHHHHhcC--CCCcccccCcCCC
Q 009499 476 SKDQEPGSCIICQEDYRDNEKIGTLDCD-----HEYHAECLKKWLFIK--NVCPICKSEALAT 531 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e~v~~LpCg-----H~FH~~CI~qWL~~k--~sCPvCR~~l~~~ 531 (533)
....+++.|.||+++|++++.+ ++||. |.||.+||++||..+ .+||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3456678999999999887766 58996 999999999999986 4899999988653
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=105.19 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
..++..|+||++.+.+. +.++|+|.||..||.+|++.+..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 45678899999998765 67799999999999999999999999999875
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=102.93 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
.+++..|+||++.+.+. +..++|+|.||..||.+|++.+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45567899999999874 33349999999999999999999999999988653
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5e-12 Score=101.22 Aligned_cols=52 Identities=29% Similarity=0.521 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh---cCCCCcccccCcCCC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF---IKNVCPICKSEALAT 531 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~---~k~sCPvCR~~l~~~ 531 (533)
...++..|+||++.|.+. ..++|||.||..||.+|++ .+..||+||+++...
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 346678999999999864 5679999999999999997 456899999988654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=2.4e-12 Score=101.86 Aligned_cols=49 Identities=29% Similarity=0.674 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
+++..|+||++.+.+. +..++|||.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4567899999998753 577899999999999999999999999998874
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.1e-12 Score=103.97 Aligned_cols=53 Identities=28% Similarity=0.557 Sum_probs=45.6
Q ss_pred CCCCCcccccccccCCCCc-eEEeCCCChhhHHHHHHHHhcC---CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEK-IGTLDCDHEYHAECLKKWLFIK---NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~-v~~LpCgH~FH~~CI~qWL~~k---~sCPvCR~~l~~ 530 (533)
..+...|+||++.|.+.+. ...|+|||.||..||.+|++.+ ..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4567889999999998664 5677999999999999999986 789999997754
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.7e-12 Score=103.45 Aligned_cols=50 Identities=20% Similarity=0.550 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
...+...|+||++.|.+. .+++|||.||..||.+|++....||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345567899999999764 56899999999999999999999999999864
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.23 E-value=1.1e-12 Score=116.62 Aligned_cols=53 Identities=30% Similarity=0.668 Sum_probs=2.1
Q ss_pred CCCCCcccccccccCCC-------------C--ceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDN-------------E--KIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~-------------e--~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
+.+++.|+||+++|.+. + .+..++|+|.||..||.+||+.+.+||+||++...
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCCC----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 34568999999999752 1 23345899999999999999999999999998644
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.5e-12 Score=98.84 Aligned_cols=51 Identities=16% Similarity=0.425 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh-cCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~-~k~sCPvCR~~l~~~ 531 (533)
..++..|+||++.+.+. ..++|||.||..||.+|++ .+..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45678899999999876 4479999999999999995 567899999988654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=101.67 Aligned_cols=50 Identities=24% Similarity=0.666 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEEeC-CCChhhHHHHHHHHhcC--CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLD-CDHEYHAECLKKWLFIK--NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~Lp-CgH~FH~~CI~qWL~~k--~sCPvCR~~l~~ 530 (533)
..++..|+||++.|.+. +.|+ |||.||..||.+|++.+ ..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45667899999999876 5688 99999999999999875 689999998654
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=3.6e-11 Score=98.22 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=44.0
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc------CCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI------KNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~------k~sCPvCR~~l~~~ 531 (533)
..++..|+||++.|.+. ..++|+|.||..||.+|++. ...||+||+++...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45678999999999876 47899999999999999998 67899999987643
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=7e-12 Score=113.36 Aligned_cols=47 Identities=34% Similarity=0.862 Sum_probs=42.1
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
++..|+||++.|.++ +.|+|||.||..||.+|+..+.+||+||+++.
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 346899999999765 67899999999999999999999999999874
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4e-11 Score=93.66 Aligned_cols=45 Identities=31% Similarity=0.581 Sum_probs=38.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh---cCCCCccc
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF---IKNVCPIC 524 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~---~k~sCPvC 524 (533)
...++..|+||++.|.+. +.|+|||.||..||++|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356678999999999875 5679999999999999998 45689998
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.15 E-value=2.3e-11 Score=98.86 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
..++..|+||++.+.++ ++++|||.||..||.+|++. +.+||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35678999999999875 56799999999999999997 7889999998754
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.2e-11 Score=97.79 Aligned_cols=50 Identities=28% Similarity=0.574 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc------CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI------KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~------k~sCPvCR~~l~~ 530 (533)
..+...|+||++.|.+. ..++|||.||..||.+|++. +..||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45678999999999875 45799999999999999988 7899999998764
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-11 Score=100.11 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-------CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-------KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-------k~sCPvCR~~l~~ 530 (533)
..++..|+||++.|.+. ..|+|||.||..||.+|++. ...||+||+++..
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45678999999999875 45799999999999999987 5689999998754
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=2e-11 Score=107.47 Aligned_cols=52 Identities=29% Similarity=0.657 Sum_probs=45.5
Q ss_pred CCCCcccccccccCCC----CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRDN----EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~----e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.++..|+||++.|.+. +.+..++|||.||..||++||+.+.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4567999999999764 455788999999999999999999999999998764
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=6.6e-11 Score=99.06 Aligned_cols=50 Identities=24% Similarity=0.655 Sum_probs=42.8
Q ss_pred CCCCCCcccccccccCCCCceEEeC-CCChhhHHHHHHHHhcC--CCCcccccCcC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLD-CDHEYHAECLKKWLFIK--NVCPICKSEAL 529 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~Lp-CgH~FH~~CI~qWL~~k--~sCPvCR~~l~ 529 (533)
...++..|+||++.|.+. +.|+ |||.||..||.+|+..+ ..||+||+++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345678999999999876 6788 99999999999999854 58999999873
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=105.21 Aligned_cols=50 Identities=28% Similarity=0.624 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-CCCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-NVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-~sCPvCR~~l~~ 530 (533)
.++..|+||++.|.+. +..++|||.||..||.+|++.+ ..||+||+++..
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3557899999999864 3338999999999999999987 699999998753
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7e-11 Score=90.24 Aligned_cols=44 Identities=27% Similarity=0.788 Sum_probs=37.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh---cCCCCccc
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF---IKNVCPIC 524 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~---~k~sCPvC 524 (533)
..++..|+||++.+.+. +.|+|+|.||..||++|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999876 5589999999999999954 56789998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.06 E-value=4.1e-11 Score=101.90 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=41.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
++..|+||++.|.+. +..++|||.||..||.+|+..+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999874 3334899999999999999999999999998753
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=6.6e-11 Score=102.30 Aligned_cols=50 Identities=22% Similarity=0.648 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.++..|+||++.|.+. +..++|||.||..||.+|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4567899999999864 3334999999999999999999999999998764
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.2e-10 Score=91.51 Aligned_cols=51 Identities=20% Similarity=0.462 Sum_probs=41.7
Q ss_pred CCCccccccc-ccCCCCce-EEeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009499 480 EPGSCIICQE-DYRDNEKI-GTLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLE-ey~~~e~v-~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
++..|+||++ .|.+.... ..++|||.||..||.+|+.. +..||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 77776543 45799999999999999775 4679999998764
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=94.98 Aligned_cols=51 Identities=20% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC--CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK--NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k--~sCPvCR~~l~~ 530 (533)
.+..+.|+||.+.+..++ ....|+|.||..||++||+++ .+||+||++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345679999999998763 334899999999999999987 899999988654
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.02 E-value=8.1e-11 Score=104.18 Aligned_cols=49 Identities=29% Similarity=0.510 Sum_probs=42.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC-CCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN-VCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~-sCPvCR~~l~~ 530 (533)
.++..|+||++.|.+. +.++|||.||..||.+|+..+. .||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3457899999999865 6679999999999999998654 89999998854
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.1e-10 Score=102.72 Aligned_cols=53 Identities=28% Similarity=0.645 Sum_probs=45.5
Q ss_pred CCCCCcccccccccCCC----CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDN----EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~----e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.++...|+||++.|.+. ..+..++|||.||..||++||+.+++||+||+.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 45678899999999753 345678999999999999999999999999998765
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.4e-10 Score=98.60 Aligned_cols=47 Identities=32% Similarity=0.637 Sum_probs=40.6
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC---CCcccccCcCC
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN---VCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~---sCPvCR~~l~~ 530 (533)
...|+||++.|.+. ..++|||.||..||.+|+..+. .||+||+.+..
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45899999999876 4579999999999999999754 89999998764
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=4.2e-10 Score=94.05 Aligned_cols=50 Identities=8% Similarity=-0.023 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..++..|+||++.++++ ++++|||.|++.||.+|+....+||+||.++..
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45678999999999987 678999999999999999988999999987753
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=8.2e-11 Score=102.70 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=42.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
..++..|+||++.|.+. +.|+|||.||..||.+|+.. +..||+||+.+.
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34567899999999875 67799999999999999987 678999999864
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=2.4e-10 Score=105.97 Aligned_cols=50 Identities=24% Similarity=0.623 Sum_probs=41.9
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
.++..|+||++.|.+. +..++|||.||..||.+|++. +..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456899999999864 444499999999999999997 7789999998743
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=3.7e-10 Score=104.02 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=42.2
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC-CCcccccCcCCC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN-VCPICKSEALAT 531 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~-sCPvCR~~l~~~ 531 (533)
+...|+||++.|.+. ++|+|||.||..||.+|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999875 5689999999999999999765 899999987653
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=7.7e-10 Score=95.07 Aligned_cols=50 Identities=12% Similarity=-0.008 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCC-ChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCD-HEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCg-H~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..++..|+||++.++++ ++++|| |.|++.||.+||....+||+||.++..
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45678999999999987 678999 999999999999988899999998754
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=2.3e-10 Score=100.59 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC-CCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN-VCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~-sCPvCR~~l~~ 530 (533)
..++..|+||++.+.+. +.++|||.||..||.+|++.+. .||+||+++..
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45667999999999875 5679999999999999999865 99999998754
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.92 E-value=8.7e-10 Score=95.08 Aligned_cols=50 Identities=8% Similarity=-0.016 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..++..|+||++.++++ ++++|||.|++.||.+||....+||+||.++..
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45678999999999987 678999999999999999988899999998754
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=2.8e-10 Score=87.59 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
+.++..|+||++.|.+. +.|+|||.||..||.+| +..||+||+++..+
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 35667899999999876 67899999999999885 67899999988654
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=4.2e-10 Score=98.33 Aligned_cols=48 Identities=25% Similarity=0.596 Sum_probs=41.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
++..|+||++.+.+. +.++|||.||..||.+|+.. +..||+||+++..
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 457899999999865 55899999999999999997 7799999998754
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=5.6e-10 Score=101.87 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=42.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC-CCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN-VCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~-sCPvCR~~l~ 529 (533)
.+++..|+||++.+.++ +.++|||.||..||.+|++.+. .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 45677999999999876 5689999999999999998765 8999999763
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=9.9e-10 Score=87.02 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCCceEEe--CCCCh-hhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTL--DCDHE-YHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L--pCgH~-FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.++..|.||++...+. ..+ ||||. ||.+|+.+|++.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3556899999987654 444 99999 899999999999999999999874
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.81 E-value=3.2e-09 Score=87.67 Aligned_cols=53 Identities=17% Similarity=0.402 Sum_probs=41.3
Q ss_pred CCCCCcccccccccCCCCceE-EeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIG-TLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~-~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
.+++..|+||++.+...+.+. .++|||.||..||.+|+.. ...||+||+++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456789999999986543322 2359999999999999854 5689999998754
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.80 E-value=1.8e-09 Score=113.54 Aligned_cols=48 Identities=29% Similarity=0.651 Sum_probs=41.7
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh-cCCCCcccccCcCC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~-~k~sCPvCR~~l~~ 530 (533)
....|+||++.+.+ .+.++|||.||..||.+|+. .+..||+||+++..
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 44789999999865 37789999999999999999 68899999998753
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.3e-09 Score=95.58 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=40.1
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 480 EPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
++..|+||++.|.+. +.+ +|||.||..||.+|+. ..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 457899999999876 556 9999999999999998 889999998743
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=2.5e-09 Score=84.41 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCCCceEEe--CCCCh-hhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTL--DCDHE-YHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L--pCgH~-FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
+....|.||++...+. ..+ ||||. ||.+|+.+|.+.+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456899999986653 344 99998 999999999998899999999874
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=5e-09 Score=103.11 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-~sCPvCR~~l~~ 530 (533)
..+...|+||++.+.++ ++++|||.||..||.+||... .+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44678899999999987 678999999999999999874 459999998753
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=3.2e-09 Score=86.21 Aligned_cols=43 Identities=23% Similarity=0.507 Sum_probs=37.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCh-hhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHE-YHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~-FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
++..|.||++.+.+. ..++|||. ||..||.+| ..||+||+++.
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 456899999988764 67899999 999999999 88999999774
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=6.9e-09 Score=88.06 Aligned_cols=47 Identities=19% Similarity=0.500 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCCCceEEeC-CCChhhHHHHHHHHhcC------CCCcc--cccC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLD-CDHEYHAECLKKWLFIK------NVCPI--CKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~Lp-CgH~FH~~CI~qWL~~k------~sCPv--CR~~ 527 (533)
..++..|+||++.|+++ ++++ |||.|++.||.+||... .+||+ |++.
T Consensus 4 ~~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35678999999999986 5674 99999999999999864 48999 9865
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.64 E-value=1.6e-08 Score=79.54 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=39.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCC--C---hhhHHHHHHHHhc--CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCD--H---EYHAECLKKWLFI--KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCg--H---~FH~~CI~qWL~~--k~sCPvCR~~l~~ 530 (533)
++++..|.||+++.. +.+ ++||. + .||..||.+|+.. +.+||+||.++..
T Consensus 3 ~~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456789999999843 334 57855 4 9999999999986 5789999988753
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.61 E-value=9.6e-09 Score=95.43 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-~sCPvCR~~l~~ 530 (533)
..+...|+||++.+.++ +.++|||.||..||.+|++.+ ..||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45667999999999876 568999999999999999875 499999998754
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.61 E-value=5.5e-09 Score=107.80 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCCCCceE-----EeCCCChhhHHHHHHHHhcC-----------CCCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIG-----TLDCDHEYHAECLKKWLFIK-----------NVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~-----~LpCgH~FH~~CI~qWL~~k-----------~sCPvCR~~l~ 529 (533)
++...+|+||++.+.+...+. -++|+|.||..||++||+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 356778999999998743332 23799999999999999862 46999999774
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=6e-08 Score=77.78 Aligned_cols=48 Identities=23% Similarity=0.621 Sum_probs=38.9
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCCCh-hhHHHHHHHHhcCCCCcccccCcCC
Q 009499 476 SKDQEPGSCIICQEDYRDNEKIGTLDCDHE-YHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e~v~~LpCgH~-FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
...+++..|.||++...+ ++.+||+|. ||..|+.. ...||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345567889999998765 477899999 99999984 4789999997753
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=3e-08 Score=83.61 Aligned_cols=49 Identities=20% Similarity=0.574 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC--------CCCcc--cccC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK--------NVCPI--CKSE 527 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k--------~sCPv--CR~~ 527 (533)
.+...|.||++++...+.+..++|+|.||.+||+++++.+ ..||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3456899999999877655555899999999999999752 37999 9987
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.47 E-value=6.2e-08 Score=92.03 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-~sCPvCR~~l~~ 530 (533)
..+...|+||++.+.++ ++++|||.|+..||.+||... .+||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 35678899999999987 677999999999999999874 469999987753
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.5e-08 Score=78.85 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=35.7
Q ss_pred CCcccccccccCCCCceEEeCCCCh-hhHHHHHHHHhcCCCCcccccCcCC
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHE-YHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~-FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
+..|+||++.+.+. +.++|||. ||..|+.+ ...||+||+++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45799999998764 56899999 99999975 3789999998754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.35 E-value=6.3e-08 Score=79.80 Aligned_cols=43 Identities=26% Similarity=0.645 Sum_probs=36.1
Q ss_pred CCCcccccccccCCCCceEEeCCCCh-hhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHE-YHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~-FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
++..|.||++.+.+ +..+||||. ||..|+.+| ..||+||+++.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34589999998765 477899999 999999988 39999999764
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.35 E-value=1.2e-07 Score=74.61 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=40.8
Q ss_pred CcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 482 GSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..|+||++.+++. +++ +|||+|.+.||.+||+.+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999999976 556 899999999999999988889999988754
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.7e-07 Score=93.78 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=41.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC--CCCcc--cccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK--NVCPI--CKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k--~sCPv--CR~~l~ 529 (533)
...+..|+||++.|+++ |..+.|||.||+.||.+|++.. ..||+ ||+.+.
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 44567899999999876 5556999999999999999864 47999 998664
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=2e-07 Score=96.87 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=38.2
Q ss_pred CCCCcccccccccCCCCceEEeCCCCh-hhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHE-YHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~-FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
+++..|+||++.+.+. +.+||||. ||..||.+| ..||+||+++.
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 4567899999998764 67799999 999999998 78999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.70 E-value=1.3e-05 Score=69.04 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=37.1
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009499 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
-|.+|--.+.. ..+++||+|.||.+|+..|.++ .++||+|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777766554 3577899999999999999976 6789999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.49 E-value=6.9e-05 Score=73.98 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC--CCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN--VCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~--sCPvCR~~l~ 529 (533)
.-..|.||.+....+ +.+-.|++.||..|+++|++.+. .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467899999999876 33335999999999999998754 8999998653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.06 E-value=0.0068 Score=51.59 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCCCceEEeCCC-ChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCD-HEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCg-H~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
-.-.-|-.|.-+.+ ..+.|. |..|..||...|.+.+.||||+.++++
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 34567999986644 344565 999999999999999999999998865
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.59 E-value=0.015 Score=48.83 Aligned_cols=36 Identities=28% Similarity=0.558 Sum_probs=28.2
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHH-HH
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKK-WL 515 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~q-WL 515 (533)
++..|.||+++|........+.|+|.||..||.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4578999998865443444589999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.85 E-value=0.047 Score=43.43 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=35.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC----CCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN----VCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~----sCPvCR~~l~ 529 (533)
......|.||.+. ++.+..-.|...||..|+...|.... .||.|+....
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 4556789999853 33333337999999999998887633 6999986543
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.39 E-value=0.058 Score=42.05 Aligned_cols=50 Identities=28% Similarity=0.570 Sum_probs=35.6
Q ss_pred CCCCCcccccccccCCCC-ceEEeCCCChhhHHHHHHHHh-----cCCCCcccccC
Q 009499 478 DQEPGSCIICQEDYRDNE-KIGTLDCDHEYHAECLKKWLF-----IKNVCPICKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e-~v~~LpCgH~FH~~CI~qWL~-----~k~sCPvCR~~ 527 (533)
+++...|.||...+.+.. .|..-.|.-.||..|+.--.. .+-.||.|+.+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456678999999886543 333347999999999865432 24579999754
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.87 E-value=0.27 Score=41.03 Aligned_cols=36 Identities=17% Similarity=0.475 Sum_probs=25.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHH
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKW 514 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qW 514 (533)
...++.|.||- .|..++....=-|+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 45678999985 4444433333348999999999996
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.32 E-value=0.08 Score=42.51 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=35.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc----CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI----KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~----k~sCPvCR~~l~~ 530 (533)
..+...|.||.........|..-.|.-.||..|+.--+.. .-.||.|+..+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3445679999887643333333379999999999765543 3369999876543
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.12 E-value=0.35 Score=37.51 Aligned_cols=47 Identities=32% Similarity=0.608 Sum_probs=33.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc----CCCCcccccC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI----KNVCPICKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~----k~sCPvCR~~ 527 (533)
...+..|.||.+. ++.+..-.|.-.||..|+..-|.. +=.||.|+++
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4567889999873 333333379999999999986654 2269999764
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.88 E-value=0.14 Score=39.73 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=35.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~~l~~ 530 (533)
+..+..|.||.+. ++.+..-.|.-.||..|+..-|... =.||.|+.....
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 4567789999862 3333333699999999998765542 259999876554
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.82 E-value=0.18 Score=58.52 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCceEEeCCC-ChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCD-HEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCg-H~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.-++..|+|-++-.+++ ++++.| +.|-+.+|.+||....+||+=|.++..
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 44567899999999887 778887 699999999999999999999887753
No 82
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.45 E-value=0.31 Score=39.18 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=33.6
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHH---------hcCCCCcccccCc
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWL---------FIKNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL---------~~k~sCPvCR~~l 528 (533)
.....| ||...+..+..|..-.|.-.||..|+.--. ..+-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 344567 899887654445445799999999985221 2366899997543
No 83
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.21 E-value=0.4 Score=40.29 Aligned_cols=50 Identities=20% Similarity=0.443 Sum_probs=35.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC----CCcccccCcC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN----VCPICKSEAL 529 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~----sCPvCR~~l~ 529 (533)
.+..++.|.||.+. ++.+..-.|--.||..|+..=|.... .||.|+....
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 35667789999964 33333336888999999987665422 5999986543
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.05 E-value=1 Score=36.45 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCCCCcccccccccCC-CCceEEeCCCChhhHHHHHHHHh-----cCCCCcccccCc
Q 009499 478 DQEPGSCIICQEDYRD-NEKIGTLDCDHEYHAECLKKWLF-----IKNVCPICKSEA 528 (533)
Q Consensus 478 ~eee~~C~ICLEey~~-~e~v~~LpCgH~FH~~CI~qWL~-----~k~sCPvCR~~l 528 (533)
+.+...| ||...+.. +..|..-.|.-.||..|+.--.. .+-.||.|+...
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3445566 99998863 33444447999999999953222 244799998653
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.04 E-value=0.6 Score=34.50 Aligned_cols=44 Identities=27% Similarity=0.703 Sum_probs=30.4
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCccccc
Q 009499 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKS 526 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~ 526 (533)
.|.||...-..++.+..-.|.-.||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764444334444799999999997655442 25999975
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.80 E-value=0.17 Score=38.53 Aligned_cols=46 Identities=24% Similarity=0.622 Sum_probs=33.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC----CCccccc
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN----VCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~----sCPvCR~ 526 (533)
+..+..|.||.+. ++.+..-.|.-.||..|+..-|.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567889999974 33343347999999999987665422 5999965
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.72 E-value=0.37 Score=41.40 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=29.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF 516 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~ 516 (533)
...++.|.||.+.-+..+.+..-.|...||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 457789999998643333344457999999999988765
No 88
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.89 E-value=0.69 Score=39.03 Aligned_cols=47 Identities=34% Similarity=0.714 Sum_probs=30.6
Q ss_pred CCCCcccccccccCCCCceEEeC--CC-ChhhHHHHHHHHhc----CCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLD--CD-HEYHAECLKKWLFI----KNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~Lp--Cg-H~FH~~CI~qWL~~----k~sCPvCR~~l~ 529 (533)
.+...| ||..... ++.|..=. |. ..||..||. |.. +-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 344567 9988653 44333335 66 689999997 443 336999987543
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.82 E-value=0.12 Score=39.83 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=34.2
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~~l~ 529 (533)
..+..|.||... ++.+..-.|.-.||..|+..-|... =.||.|+....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 456789999974 4444444799999999998765542 25999976543
No 90
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.76 E-value=0.63 Score=38.81 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCCCCcccccccccC-CCCceEEe-CCCChhhHHHHHHHHhc--CCCCcccccCc
Q 009499 478 DQEPGSCIICQEDYR-DNEKIGTL-DCDHEYHAECLKKWLFI--KNVCPICKSEA 528 (533)
Q Consensus 478 ~eee~~C~ICLEey~-~~e~v~~L-pCgH~FH~~CI~qWL~~--k~sCPvCR~~l 528 (533)
.+++..|.||.+.-. +.+.++.- .|.-.||..|+..-+.- .=.||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456788999997642 22223222 69899999999754322 23599997543
No 91
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.74 E-value=0.85 Score=36.54 Aligned_cols=48 Identities=33% Similarity=0.695 Sum_probs=30.7
Q ss_pred CCCCCcccccccccCCCCceEEeC--CC-ChhhHHHHHHHHhc----CCCCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLD--CD-HEYHAECLKKWLFI----KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~Lp--Cg-H~FH~~CI~qWL~~----k~sCPvCR~~l~ 529 (533)
..+...| ||..... ++.|..=. |. ..||..||. |.. +-.||.|+....
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3455667 8988643 43332225 66 699999997 443 236999986543
No 92
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.19 E-value=0.76 Score=47.98 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=32.7
Q ss_pred CCcccccccccCCCCceEEeCCCCh--hhHHHHHHHHhcC--CCCcccccCcCC
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHE--YHAECLKKWLFIK--NVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~--FH~~CI~qWL~~k--~sCPvCR~~l~~ 530 (533)
...|+|-+..++.+ ++-..|.|. |-+.-+.+...++ -.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 36799888776654 677789998 5544444444433 369999887643
No 93
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.17 E-value=0.7 Score=37.48 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCCCcccccccccCCCCceEEe--CCCChhhHHHHHHHHh---------cCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTL--DCDHEYHAECLKKWLF---------IKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L--pCgH~FH~~CI~qWL~---------~k~sCPvCR~~l~ 529 (533)
.+...| ||-.....+..|..- .|...||..|+.---. .+-.||.|+....
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 455678 898875556555555 6999999999953211 2457999986543
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.82 E-value=0.53 Score=39.91 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc---CCCCcccccC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI---KNVCPICKSE 527 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~---k~sCPvCR~~ 527 (533)
+...| ||-.....+..|..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 33457 89877666554444479999999999653332 2369999753
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.19 E-value=0.89 Score=36.46 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=33.1
Q ss_pred CCCCCCccccccccc-CCCCceEEe-CCCChhhHHHHHHHHhc--CCCCccccc
Q 009499 477 KDQEPGSCIICQEDY-RDNEKIGTL-DCDHEYHAECLKKWLFI--KNVCPICKS 526 (533)
Q Consensus 477 ~~eee~~C~ICLEey-~~~e~v~~L-pCgH~FH~~CI~qWL~~--k~sCPvCR~ 526 (533)
...+++.|.||.+.- .+++.++.- .|.-.||..|+..-+.- .=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 356678999999764 223333332 79999999999754322 225999965
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=78.06 E-value=0.46 Score=37.01 Aligned_cols=53 Identities=30% Similarity=0.608 Sum_probs=35.7
Q ss_pred CCCCCcccccccccCC--CCceEEeCCCChhhHHHHHHHHhc-------CCCCcccccCcCC
Q 009499 478 DQEPGSCIICQEDYRD--NEKIGTLDCDHEYHAECLKKWLFI-------KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~--~e~v~~LpCgH~FH~~CI~qWL~~-------k~sCPvCR~~l~~ 530 (533)
+.++..|.||...... ++.+..-.|.-.||..|+..-|.. .=.|+.|+.....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 4567899999987543 222222379999999999864421 2369999765543
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.32 E-value=1.2 Score=46.24 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=33.5
Q ss_pred CCcccccccccCCCCceEEeCCCCh--hhHHHHHHHHhcC--CCCcccccCcCC
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHE--YHAECLKKWLFIK--NVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~--FH~~CI~qWL~~k--~sCPvCR~~l~~ 530 (533)
...|+|-+..++.+ ++...|.|. |-+.-+-+...++ -.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 35799888777654 667789998 6655555554443 369999987754
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.13 E-value=0.25 Score=41.56 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=34.1
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCccccc
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKS 526 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~ 526 (533)
...+...|.||...-...+.+..-.|.-.||..|+..=|... =.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345667899999875433333333799999999998544432 25999965
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.19 E-value=0.53 Score=36.96 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=33.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCcccccC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~~ 527 (533)
...++.|.||.+. ++.+..-.|.-.||..|+..-|... =.||.|+..
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567899999964 3434334799999999998655542 259999653
No 100
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=73.69 E-value=0.59 Score=37.16 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh---cCCCCccccc
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF---IKNVCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~---~k~sCPvCR~ 526 (533)
..+...| ||...+..+..|..-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4556678 9998776433444447999999999964322 2347999974
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=73.68 E-value=2.3 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCCCCcccccccccCCCCceE-Ee-CCCChhhHHHHHHHHhc----------CCCCccccc
Q 009499 478 DQEPGSCIICQEDYRDNEKIG-TL-DCDHEYHAECLKKWLFI----------KNVCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~-~L-pCgH~FH~~CI~qWL~~----------k~sCPvCR~ 526 (533)
++....|.+|...+...+..+ .- .|.-.||..|+.---.. +-.||.|++
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 456678999999987665443 34 69999999998432210 335888863
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.60 E-value=4.6 Score=33.47 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhc
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFI 517 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~ 517 (533)
......|.+|.|.+++...|..- -=.|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45668899999999987555433 14799999999999886
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.57 E-value=3.7 Score=35.25 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=23.4
Q ss_pred CCCccccccccc------CCCCceEEeCCCChhhHHHHH
Q 009499 480 EPGSCIICQEDY------RDNEKIGTLDCDHEYHAECLK 512 (533)
Q Consensus 480 ee~~C~ICLEey------~~~e~v~~LpCgH~FH~~CI~ 512 (533)
....|.||+..- ..++.+....|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456899999763 122334444799999999995
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=72.17 E-value=0.69 Score=39.77 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCcccccccccCCCCceE-Ee-CCCChhhHHHHHHHHh----------cCCCCcccccCc
Q 009499 481 PGSCIICQEDYRDNEKIG-TL-DCDHEYHAECLKKWLF----------IKNVCPICKSEA 528 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~-~L-pCgH~FH~~CI~qWL~----------~k~sCPvCR~~l 528 (533)
...|.||...|.+....+ .- .|.-.||..|+.--.. .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999986654433 33 6899999999852210 244799997654
No 105
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.18 E-value=0.99 Score=41.48 Aligned_cols=47 Identities=30% Similarity=0.624 Sum_probs=31.6
Q ss_pred CCCCcccccccccCCCC-ceEEeCCCChhhHHHHHHHHh-----cCCCCccccc
Q 009499 479 QEPGSCIICQEDYRDNE-KIGTLDCDHEYHAECLKKWLF-----IKNVCPICKS 526 (533)
Q Consensus 479 eee~~C~ICLEey~~~e-~v~~LpCgH~FH~~CI~qWL~-----~k~sCPvCR~ 526 (533)
.+...| ||...+.+.. .+..-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 455678 9998876443 343447999999999953221 2447999975
No 106
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.18 E-value=0.7 Score=36.80 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCCCcccccccccCCCC-ceEEeCCCChhhHHHHHHHH----hcCCCCcccccCc
Q 009499 479 QEPGSCIICQEDYRDNE-KIGTLDCDHEYHAECLKKWL----FIKNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e-~v~~LpCgH~FH~~CI~qWL----~~k~sCPvCR~~l 528 (533)
.+...| ||...+.+++ .|..-.|.-.||..|+.--. ..+-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 344568 7988776654 34444799999999986432 1244799997643
No 107
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=67.34 E-value=1.6 Score=32.58 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=29.4
Q ss_pred cccccccccCCCCc-eEEe-CCCChhhHHHHHHHH----hcCCCCcccc
Q 009499 483 SCIICQEDYRDNEK-IGTL-DCDHEYHAECLKKWL----FIKNVCPICK 525 (533)
Q Consensus 483 ~C~ICLEey~~~e~-v~~L-pCgH~FH~~CI~qWL----~~k~sCPvCR 525 (533)
.|.||...+.+++. |..- .|.-.||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57899998865543 3333 588999999976322 2456799985
No 108
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.71 E-value=9.4 Score=32.13 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=37.5
Q ss_pred CCCCCcccccccccCCC---Cc-eEEeCCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDN---EK-IGTLDCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~---e~-v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
......|.||-+++... +. +..--|+=-.|+.|.+-=.+. +..||-|++...
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34557999999987543 21 222368888899999765554 778999998775
No 109
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=66.34 E-value=2.8 Score=33.37 Aligned_cols=34 Identities=26% Similarity=0.568 Sum_probs=27.0
Q ss_pred CCCCCcccccccccCCCCceEEeCC-CChhhHHHHHHHH
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTLDC-DHEYHAECLKKWL 515 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpC-gH~FH~~CI~qWL 515 (533)
.++..-|.||.++ ..++.+.| +-+||..|.++-=
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 4566779999998 23678889 7899999988753
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.48 E-value=6.7 Score=35.57 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=33.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh---------c--CCCCcccccC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF---------I--KNVCPICKSE 527 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~---------~--k~sCPvCR~~ 527 (533)
++..++.|.||.+. ++.+-.-.|--.||..||..=|. . .=.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 35667899999963 33332237999999999997653 1 2369999753
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.06 E-value=0.49 Score=39.38 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=33.7
Q ss_pred CCCCcccccccccCCC-CceEEe-CCCChhhHHHHHHHHhc--------CCCCcccccCc
Q 009499 479 QEPGSCIICQEDYRDN-EKIGTL-DCDHEYHAECLKKWLFI--------KNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~-e~v~~L-pCgH~FH~~CI~qWL~~--------k~sCPvCR~~l 528 (533)
+.+..|.||...-... +.+..- .|...||..|+..-|.. .=.|+.|+...
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 3467899999864432 223222 69999999999876642 23699996543
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.20 E-value=2.1 Score=36.85 Aligned_cols=45 Identities=24% Similarity=0.627 Sum_probs=30.7
Q ss_pred CcccccccccCCCCce-EEeCCCChhhHHHHHHHHhcC----CCCccccc
Q 009499 482 GSCIICQEDYRDNEKI-GTLDCDHEYHAECLKKWLFIK----NVCPICKS 526 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v-~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~ 526 (533)
..|.||.+.-.+.+.+ ..-.|...||..|+..-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 4789998753332233 233699999999998766542 26999985
No 113
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=59.62 E-value=0.72 Score=36.39 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCcccccccccCCCCceEEe--CCCChhhHHHHHHH---Hh-----cCCCCccccc
Q 009499 480 EPGSCIICQEDYRDNEKIGTL--DCDHEYHAECLKKW---LF-----IKNVCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L--pCgH~FH~~CI~qW---L~-----~k~sCPvCR~ 526 (533)
+...| ||-.....+..|..= .|.-.||..|+.-- .. .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 33457 897665555433332 38889999998311 01 1346999974
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.07 E-value=0.66 Score=40.27 Aligned_cols=52 Identities=29% Similarity=0.502 Sum_probs=35.3
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCcccccCcCCCCC
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKSEALATKS 533 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~~l~~~eS 533 (533)
..|.||...-..++.+..-.|...||..|+..=|... =.||.|+..+...+|
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k~~ 114 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKAS 114 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHTCC
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcccC
Confidence 3688998764444433333799999999998655442 259999876655544
No 115
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=57.78 E-value=1.2 Score=34.48 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=27.0
Q ss_pred CCCCcccccccccCCCCceEEeC--CC-ChhhHHHHHHHHhc----CCCCccccc
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLD--CD-HEYHAECLKKWLFI----KNVCPICKS 526 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~Lp--Cg-H~FH~~CI~qWL~~----k~sCPvCR~ 526 (533)
.+...| ||..... ++.|..=. |. ..||..||. |.. +-.||.|++
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344556 8988643 33222224 55 689999998 444 236999965
No 116
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=57.21 E-value=1.3 Score=34.24 Aligned_cols=44 Identities=34% Similarity=0.750 Sum_probs=27.7
Q ss_pred CCCCcccccccccCCCCceEEeC--CC-ChhhHHHHHHHHhc----CCCCccccc
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLD--CD-HEYHAECLKKWLFI----KNVCPICKS 526 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~Lp--Cg-H~FH~~CI~qWL~~----k~sCPvCR~ 526 (533)
.+...| ||.+... ++.|..=. |. ..||..|+. |.. +-.||.|++
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344556 9988643 43332225 66 699999998 443 236999975
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.10 E-value=5.8 Score=34.19 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=23.3
Q ss_pred CcccccccccCC-------CCceEEeCCCChhhHHHHHHH
Q 009499 482 GSCIICQEDYRD-------NEKIGTLDCDHEYHAECLKKW 514 (533)
Q Consensus 482 ~~C~ICLEey~~-------~e~v~~LpCgH~FH~~CI~qW 514 (533)
+.|.||+..-.. ++.+....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 579999976421 123334479999999999865
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=51.63 E-value=11 Score=33.58 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=32.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHH------hc-----CCCCcccccC
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWL------FI-----KNVCPICKSE 527 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL------~~-----k~sCPvCR~~ 527 (533)
++..++.|.||.+. ++.+-.=.|-..||.+||..-+ +. .=.|++|+.+
T Consensus 53 ~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 35667789999964 3222222689999999999752 22 2369999753
No 119
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.32 E-value=2.9 Score=35.70 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=30.9
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCcccccCcC
Q 009499 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPICKSEAL 529 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvCR~~l~ 529 (533)
.|.||.+.-.+...+..-.|...||..||..=|... -.||.|+....
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 577887654333233333799999999998755542 25999976543
No 120
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=48.13 E-value=1.6 Score=29.16 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=10.7
Q ss_pred CCCCcccccCcCCCC
Q 009499 518 KNVCPICKSEALATK 532 (533)
Q Consensus 518 k~sCPvCR~~l~~~e 532 (533)
+..||+||..++..+
T Consensus 3 k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMD 17 (28)
T ss_dssp CEECTTSSCEESSHH
T ss_pred cccCccccccCcChH
Confidence 446999998776543
No 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=48.07 E-value=2 Score=37.98 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=30.8
Q ss_pred CCCCCcccccccccCCCCceEE-eCCCChhhHHHHHHHHhcCCCCccccc
Q 009499 478 DQEPGSCIICQEDYRDNEKIGT-LDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~-LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
+.+...|.+|...|..-..... -.||.+||..|....+.....|-.|-.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 3455789999999975433333 379999999998776655666777743
No 122
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=47.16 E-value=3.8 Score=44.23 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=30.0
Q ss_pred CcccccccccCC-CCceEEeCCCChhhHHHHHHHHh-----cCCCCcccccC
Q 009499 482 GSCIICQEDYRD-NEKIGTLDCDHEYHAECLKKWLF-----IKNVCPICKSE 527 (533)
Q Consensus 482 ~~C~ICLEey~~-~e~v~~LpCgH~FH~~CI~qWL~-----~k~sCPvCR~~ 527 (533)
..| ||...+.. +..|.+-.|.-.||..|+.---. .+-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 345 99988753 33444447999999999953222 13479999753
No 123
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=47.15 E-value=3.9 Score=39.88 Aligned_cols=47 Identities=23% Similarity=0.603 Sum_probs=27.7
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--CC---CCcccccC
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--KN---VCPICKSE 527 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k~---sCPvCR~~ 527 (533)
+..|.||...=..++.+..-.|.-.||..|+..=|.. +. .||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888864333333333379999999999965554 22 59999753
No 124
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.81 E-value=3.7 Score=33.31 Aligned_cols=46 Identities=30% Similarity=0.584 Sum_probs=30.4
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--C---CCCccccc
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--K---NVCPICKS 526 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k---~sCPvCR~ 526 (533)
+..|.||...-..++.+..-.|...||..|+..=|.. + =.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478899865333333333379999999999865543 2 25999964
No 125
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.58 E-value=12 Score=39.28 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=33.4
Q ss_pred CCCCCCcccccccccCCCCceEEe--CCCChhhHHHHHHHHhc----------CCCCccccc
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTL--DCDHEYHAECLKKWLFI----------KNVCPICKS 526 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~L--pCgH~FH~~CI~qWL~~----------k~sCPvCR~ 526 (533)
++..+..|.||-+. ++.+..= .|...||.+||+.++-. +=.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 35566789999864 3333333 69999999999999833 226888864
No 126
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.68 E-value=2.5 Score=32.91 Aligned_cols=44 Identities=34% Similarity=0.779 Sum_probs=27.6
Q ss_pred CCCcccccccccCCCCceEEeC--CC-ChhhHHHHHHHHhc----CCCCcccccC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLD--CD-HEYHAECLKKWLFI----KNVCPICKSE 527 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~Lp--Cg-H~FH~~CI~qWL~~----k~sCPvCR~~ 527 (533)
+...| ||.... .++.|..=. |. ..||..||. |.. +-.||.|+..
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 44556 998863 243232225 55 899999997 333 3369999753
No 127
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=45.60 E-value=8.3 Score=33.27 Aligned_cols=44 Identities=30% Similarity=0.607 Sum_probs=28.7
Q ss_pred CCCCCCcccccccccCCCCceEEe---CCCChhhHHHHHHHHhcC----CCCccccc
Q 009499 477 KDQEPGSCIICQEDYRDNEKIGTL---DCDHEYHAECLKKWLFIK----NVCPICKS 526 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~L---pCgH~FH~~CI~qWL~~k----~sCPvCR~ 526 (533)
+...++.|.+|.+ .++ ++.- .|--.||..||. |... =.||-|+-
T Consensus 11 ~~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 3567788999984 233 3332 388999999997 5442 24886653
No 128
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=44.83 E-value=3.2 Score=32.95 Aligned_cols=45 Identities=24% Similarity=0.624 Sum_probs=28.2
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhc--C---CCCcccccC
Q 009499 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--K---NVCPICKSE 527 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k---~sCPvCR~~ 527 (533)
.|.||...-..++.+..-.|.-.||..||..=|.. + =.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677754222222222269999999999865553 2 269999754
No 129
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.91 E-value=9.1 Score=29.70 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=29.4
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCccc
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPIC 524 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvC 524 (533)
..|--|+..|.+........|++.||.+|=.---+.=-.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998654223344799999999953322333469988
No 130
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.81 E-value=2.7 Score=34.19 Aligned_cols=44 Identities=25% Similarity=0.604 Sum_probs=27.6
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-----CCCccccc
Q 009499 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-----NVCPICKS 526 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-----~sCPvCR~ 526 (533)
.|.||...-..++.+..-.|.-.||..|+..-|... =.||.|++
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566666543222222222699999999999766642 26999975
No 131
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.34 E-value=5.6 Score=41.15 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCCCcccccccccCCCCc-eEEeCCCChhhHHHHHHHHhc-------CCCCcccccCc
Q 009499 478 DQEPGSCIICQEDYRDNEK-IGTLDCDHEYHAECLKKWLFI-------KNVCPICKSEA 528 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~-v~~LpCgH~FH~~CI~qWL~~-------k~sCPvCR~~l 528 (533)
+.+...|.+|...|..-.. -.+-.||.+||..|...++.. ...|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3456789999999875422 233479999999999877532 24688886554
No 132
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.04 E-value=12 Score=30.36 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=34.9
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhc--------CCCCcccccCc
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFI--------KNVCPICKSEA 528 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~--------k~sCPvCR~~l 528 (533)
+.+...|.+|...|..-....-- .||.+||..|....+.. ...|-.|-..+
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 45667899999999865433333 69999999998765322 23576665433
No 133
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=40.94 E-value=17 Score=33.51 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCCCCCcccccccccCCCCceEEe---CCCChhhHHHHHHHHhcC----------CCCccccc
Q 009499 476 SKDQEPGSCIICQEDYRDNEKIGTL---DCDHEYHAECLKKWLFIK----------NVCPICKS 526 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e~v~~L---pCgH~FH~~CI~qWL~~k----------~sCPvCR~ 526 (533)
+++..+..|.||-+. ..+..- .|...||.+||+.++... =.|=+|.-
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 345667889999963 333333 499999999999998542 15888864
No 134
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=39.11 E-value=3.9 Score=30.38 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=27.4
Q ss_pred ccccccCCCCceEEeCCCChhhHHHHHHHHh---cCCCCccccc
Q 009499 486 ICQEDYRDNEKIGTLDCDHEYHAECLKKWLF---IKNVCPICKS 526 (533)
Q Consensus 486 ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~---~k~sCPvCR~ 526 (533)
||...+..+..|..-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6877665434444447999999999964322 2447999974
No 135
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.45 E-value=14 Score=29.91 Aligned_cols=52 Identities=23% Similarity=0.564 Sum_probs=34.5
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhc------CCCCcccccCcC
Q 009499 478 DQEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFI------KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~------k~sCPvCR~~l~ 529 (533)
+.+...|.+|...|..-....-- .||.+||..|....+.. ...|-.|-..+.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 45567899999999854333333 69999999998765422 124666655443
No 136
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=38.15 E-value=4.9 Score=33.70 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=27.3
Q ss_pred CCCCcccccccccCCCCceEEeCCC---ChhhHHHHHHHHhc----CCCCcc-ccc
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCD---HEYHAECLKKWLFI----KNVCPI-CKS 526 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCg---H~FH~~CI~qWL~~----k~sCPv-CR~ 526 (533)
.+...| ||..... ++.|..=.|. -.||..||. |.. +-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 9987533 3433333554 689999996 333 236999 974
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.96 E-value=15 Score=29.76 Aligned_cols=38 Identities=16% Similarity=0.426 Sum_probs=27.7
Q ss_pred CCCCCcccccccccCCCCceEE-eCCCChhhHHHHHHHH
Q 009499 478 DQEPGSCIICQEDYRDNEKIGT-LDCDHEYHAECLKKWL 515 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~-LpCgH~FH~~CI~qWL 515 (533)
+.+...|.+|...|..-....- -.||.+||..|....+
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 49 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKV 49 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCce
Confidence 4566789999999975433233 3699999999976543
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.34 E-value=18 Score=29.90 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCCCcccccccccCCCCceEE-eCCCChhhHHHHHHHH
Q 009499 478 DQEPGSCIICQEDYRDNEKIGT-LDCDHEYHAECLKKWL 515 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~-LpCgH~FH~~CI~qWL 515 (533)
..+...|.+|...|..-....- -.||.+||..|....+
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 4556789999999986533333 3699999999987643
No 139
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.04 E-value=12 Score=31.01 Aligned_cols=37 Identities=16% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCCCcccccccccCCCCceE-EeCCCChhhHHHHHHHH
Q 009499 479 QEPGSCIICQEDYRDNEKIG-TLDCDHEYHAECLKKWL 515 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~-~LpCgH~FH~~CI~qWL 515 (533)
.+...|.+|...|..-.... .-.||.+||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45578999999997543322 33799999999988765
No 140
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=35.92 E-value=12 Score=29.68 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=29.9
Q ss_pred CcccccccccCCC-CceEEeCCCChhhHHHHHHHHh-----cCCCCcccccC
Q 009499 482 GSCIICQEDYRDN-EKIGTLDCDHEYHAECLKKWLF-----IKNVCPICKSE 527 (533)
Q Consensus 482 ~~C~ICLEey~~~-e~v~~LpCgH~FH~~CI~qWL~-----~k~sCPvCR~~ 527 (533)
..--||...+..+ ..|..-.|.-.||..|+.---. .+-.||.|+..
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3344898877543 3344447999999999953322 23469999754
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.30 E-value=14 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=27.1
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
....|..|-+.+..++.+. .-+..||.+|+ .|-.|++.|.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccC
Confidence 4467888888887665443 34667887774 4777776654
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.24 E-value=11 Score=33.68 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=25.2
Q ss_pred CCCCcccccccccCC--CCceEEeCCCChhhHHHHH
Q 009499 479 QEPGSCIICQEDYRD--NEKIGTLDCDHEYHAECLK 512 (533)
Q Consensus 479 eee~~C~ICLEey~~--~e~v~~LpCgH~FH~~CI~ 512 (533)
..+..|.||...|.- +-......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 456889999999942 2234445899999999954
No 143
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.06 E-value=14 Score=32.52 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHH
Q 009499 479 QEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWL 515 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL 515 (533)
.+...|.+|...|..-....-- .||.+||..|....+
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 4556899999999854333333 799999999987654
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.00 E-value=9.4 Score=33.00 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=17.1
Q ss_pred EeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 499 TLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 499 ~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
+..||..| .+=+.....||.|+.+-..
T Consensus 70 C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 70 CRKCGFVF-----KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp BTTTCCBC-----CCCSSCCSSCSSSCCCCBC
T ss_pred hhhCcCee-----cccCCCCCCCcCCCCCccC
Confidence 34688888 1222335679999976543
No 145
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.89 E-value=17 Score=28.86 Aligned_cols=41 Identities=22% Similarity=0.662 Sum_probs=28.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.....|.-|-+.+..++.+.. -+..||.+|+ .|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 345689999998876665544 3567887774 4777776653
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.84 E-value=17 Score=28.95 Aligned_cols=40 Identities=23% Similarity=0.541 Sum_probs=27.0
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
.....|..|-+.+...+.+. .-+..||.+|+ .|-.|++.|
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L 52 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATL 52 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBC
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCc
Confidence 44578999999887665554 34667888774 366666554
No 147
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.52 E-value=15 Score=31.49 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.8
Q ss_pred hhHHHHHHHHhc
Q 009499 506 YHAECLKKWLFI 517 (533)
Q Consensus 506 FH~~CI~qWL~~ 517 (533)
||+.||.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 148
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.29 E-value=15 Score=31.40 Aligned_cols=12 Identities=42% Similarity=1.096 Sum_probs=10.8
Q ss_pred hhHHHHHHHHhc
Q 009499 506 YHAECLKKWLFI 517 (533)
Q Consensus 506 FH~~CI~qWL~~ 517 (533)
||+.||.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 149
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=32.18 E-value=12 Score=29.84 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.2
Q ss_pred HHHHHhcCCCCcccccCcC
Q 009499 511 LKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 511 I~qWL~~k~sCPvCR~~l~ 529 (533)
+++||..--.||+|+.++.
T Consensus 1 md~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLK 19 (69)
T ss_dssp --CCGGGTCCCTTTCCCCE
T ss_pred CChHHHhheeCCCCCCcCe
Confidence 3567778889999998875
No 150
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.16 E-value=21 Score=28.24 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=24.8
Q ss_pred CcccccccccCCCCceEEe-CCCChhhHHHHHHH
Q 009499 482 GSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKW 514 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qW 514 (533)
..|.+|...|..-....-- .||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999999754332333 69999999997654
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.96 E-value=16 Score=34.66 Aligned_cols=36 Identities=14% Similarity=0.435 Sum_probs=27.0
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhhHHHHHHHH
Q 009499 480 EPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWL 515 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL 515 (533)
+...|.+|...|.--....-. .||.+||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 457999999999754333333 699999999987654
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.86 E-value=17 Score=34.81 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=33.6
Q ss_pred CCCcccccccccCCCCceEE-eCCCChhhHHHHHHHHhc--------CCCCcccccCc
Q 009499 480 EPGSCIICQEDYRDNEKIGT-LDCDHEYHAECLKKWLFI--------KNVCPICKSEA 528 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~-LpCgH~FH~~CI~qWL~~--------k~sCPvCR~~l 528 (533)
+...|.+|...|..-....- -.||.+||..|-..++.. ...|-.|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 45699999999986533333 379999999998765432 23577775433
No 153
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.39 E-value=11 Score=29.30 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=27.5
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhH-HHHHHHHhcCCCCcccccC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHA-ECLKKWLFIKNVCPICKSE 527 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~-~CI~qWL~~k~sCPvCR~~ 527 (533)
+-..|..|...+..+... ..=+..||. .|..+- ....|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEE--EETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCCccccCccCCCCceE--CcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 346788888887765322 234567787 587653 34568777644
No 154
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.98 E-value=15 Score=33.66 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCCcccccccccCC--CCceEEeCCCChhhHHHHHHHHhcCC--CCccccc
Q 009499 480 EPGSCIICQEDYRD--NEKIGTLDCDHEYHAECLKKWLFIKN--VCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~~--~e~v~~LpCgH~FH~~CI~qWL~~k~--sCPvCR~ 526 (533)
.+..|.+|+..|.- +-......|.|.+|..|- .|+.... .|=+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 56899999998753 334455589999999997 3544322 3777754
No 155
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.39 E-value=10 Score=30.11 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=14.8
Q ss_pred HHHHHhcCCCCcccccCcC
Q 009499 511 LKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 511 I~qWL~~k~sCPvCR~~l~ 529 (533)
+++||..--.||+||.++.
T Consensus 3 md~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCE
T ss_pred CCHHHHHHhCCCCCCCcCe
Confidence 3567777888999998764
No 156
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.17 E-value=42 Score=28.53 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=33.7
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..|..|...+.+....-...=+-.||..|..+-+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688888777531111223456689999998877766689999887764
No 157
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.96 E-value=24 Score=27.85 Aligned_cols=44 Identities=30% Similarity=0.567 Sum_probs=27.1
Q ss_pred CCCcccccccccCCCCceEEeCC---CChhhHHHHHHHHhc----CCCCcccccC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDC---DHEYHAECLKKWLFI----KNVCPICKSE 527 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpC---gH~FH~~CI~qWL~~----k~sCPvCR~~ 527 (533)
+...| ||.... .++.|..-.| ...||..||. |.. +-.||.|+..
T Consensus 5 ~~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred CCeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 44556 587753 3444433355 3799999997 332 2359999754
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.02 E-value=32 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
...|..|-+.+...+.++ ..-+..||.+|+ .|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccC
Confidence 357888888877655432 234667777664 4667766654
No 159
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.71 E-value=48 Score=26.43 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=27.0
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.....|..|-+.+... . +..-+..||.+|+ .|-.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA-V--VKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSC-C--EESSSCEECTTTC--------CCSSSCCCTT
T ss_pred CcCCCcccCCCEeccc-E--EEECCceECccCC--------EecCCCCCCC
Confidence 4456799999888752 2 3345678888774 4777777664
No 160
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.60 E-value=39 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=23.2
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
..|..|...+......-...=+..||..|..+-+..+..|..|.+.|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 456666665542111112223445666666554433335666665554
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.39 E-value=15 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=19.9
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHH
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAEC 510 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~C 510 (533)
+.|+.|-...-..|++.. -|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~--~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC--LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS--SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE--CCeEecccC
Confidence 589999988876655543 467888877
No 162
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.05 E-value=30 Score=27.03 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=25.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
.....|..|-+.+... .+..-+..||.+|+ .|-.|++.|
T Consensus 13 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 4456899998887753 23345678887775 466676654
No 163
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.06 E-value=37 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=12.9
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHH
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAEC 510 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~C 510 (533)
..|..|-+.+...+.+ +..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC 33 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc
Confidence 4566666655543222 122344555554
No 164
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.88 E-value=32 Score=27.60 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=21.9
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
....|..|-+.+.. +.+ ..-+..||.+|+ .|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~-~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-PFL--VALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCS-CEE--EETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEecc-eEE--EECCccccccCC--------ccCCCCCCCC
Confidence 44567777777642 222 234566776664 4666665543
No 165
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=22.40 E-value=24 Score=25.55 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=7.0
Q ss_pred cccccccCC
Q 009499 143 RGSYKRKNT 151 (533)
Q Consensus 143 rg~~KRK~~ 151 (533)
.||||||.+
T Consensus 34 ~GFFkR~~~ 42 (42)
T 2k1a_A 34 VGFFKRNRP 42 (42)
T ss_dssp TTTTCCCCC
T ss_pred cCcccCCCC
Confidence 489999864
No 166
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.32 E-value=33 Score=25.69 Aligned_cols=41 Identities=27% Similarity=0.625 Sum_probs=28.1
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
....|..|-+.+...+.++. .=+..||..|. .|=.|++.+.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCC
Confidence 45689999998887665432 34567887775 4777776654
No 167
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.28 E-value=5.8 Score=30.95 Aligned_cols=49 Identities=22% Similarity=0.573 Sum_probs=32.5
Q ss_pred CCCCCcccccccc-cCCCCceEEeCCCChhhHHHHHHHHhcCC----CCccccc
Q 009499 478 DQEPGSCIICQED-YRDNEKIGTLDCDHEYHAECLKKWLFIKN----VCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEe-y~~~e~v~~LpCgH~FH~~CI~qWL~~k~----sCPvCR~ 526 (533)
..+...|.||+.. |.++---...-|.-.||..|-.+|-.+.+ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4567899999974 44442222335788889989877765433 4888875
No 168
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.15 E-value=29 Score=31.99 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=13.7
Q ss_pred EeCCCChhhHHHHHHHHhcCCCCcccccC
Q 009499 499 TLDCDHEYHAECLKKWLFIKNVCPICKSE 527 (533)
Q Consensus 499 ~LpCgH~FH~~CI~qWL~~k~sCPvCR~~ 527 (533)
+..||+++-. ..-..||+|..+
T Consensus 141 C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eCCCCCeeCC-------CCCCCCCCCCCC
Confidence 4457777641 233489999753
No 169
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.06 E-value=41 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=13.7
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHH
Q 009499 482 GSCIICQEDYRDNEKIGTLDCDHEYHAEC 510 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~C 510 (533)
..|..|-+.+...+.++. .-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 33 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC 33 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC
Confidence 356666666655432222 1344555555
No 170
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.94 E-value=23 Score=30.29 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=21.2
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHh
Q 009499 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF 516 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~ 516 (533)
-..|..|-..+..++... +.=+..||..|..+.+.
T Consensus 36 CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 356777777775444332 23466777777777654
No 171
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.36 E-value=46 Score=25.51 Aligned_cols=42 Identities=26% Similarity=0.597 Sum_probs=26.0
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.....|.-|-+.+...+.+.. .-+..||..|. .|-.|++.+.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCG
T ss_pred CCCCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCC
Confidence 345688888888875444432 23567777664 4666666553
No 172
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.36 E-value=12 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHhcCCCCcccccCcC
Q 009499 512 KKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 512 ~qWL~~k~sCPvCR~~l~ 529 (533)
++||..--.||+||.++.
T Consensus 2 d~~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLE 19 (68)
T ss_dssp CCSSSCCCBCSSSCCBCE
T ss_pred ChHHhhheECCCCCCcCe
Confidence 346666678999988764
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.31 E-value=40 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.....|.-|-+.+. ++.+ ..-+..||.+|. .|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred cCCCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccC
Confidence 34467777777776 2222 234566776663 4666665543
No 174
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.10 E-value=9.5 Score=26.44 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=11.0
Q ss_pred CCCcccccccccCCCC
Q 009499 480 EPGSCIICQEDYRDNE 495 (533)
Q Consensus 480 ee~~C~ICLEey~~~e 495 (533)
+...|+||+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888888776543
No 175
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.06 E-value=73 Score=27.00 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=29.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009499 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
....|.-|-+.+.....+. --+..||.+|+ .|-.|++.|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLY--AMDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEE--ETTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCCcccCCEeCCcEEEE--ECCceeHhhCC--------CcCCCCCccc
Confidence 3468999999988764343 34778999996 4888887774
No 176
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.87 E-value=12 Score=28.52 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=13.1
Q ss_pred HHHHhcCCCCcccccCcC
Q 009499 512 KKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 512 ~qWL~~k~sCPvCR~~l~ 529 (533)
++||..--.||+|+.++.
T Consensus 4 d~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLE 21 (56)
T ss_dssp CCSCTTSCCCSSSCSCEE
T ss_pred CHHHHhheeCCCCCCcce
Confidence 456666678999998753
Done!