BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009501
(533 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 423 RLDIEDMSYEELLALGERIGNVNTGLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPG 482
+D +++SYEELLALG+ +G + GLS + +A L ++ Y N E
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIA-SLPSKRYKEGDNQNGTNE--------- 286
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATKS 533
SC+IC+ DY D+E + L C H YH+EC+ WL I VCP+C +E + S
Sbjct: 287 SCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTS 337
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Query: 424 LDIEDMSYEELLALGERIGNVNTGLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGS 483
+D + M+YEEL+ LGE +G + GLS+E++ L T+ Y + + S+ +
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELI-ETLPTKKYKFGSIF-------SRKRAGER 196
Query: 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATKS 533
C+ICQ Y+ E+ L C H YH+EC+ KWL I VCP+C SE S
Sbjct: 197 CVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVFGEPS 246
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 412 VGNFIDRHRDMRLDIEDMSYEELLALGERIGNVN-TGLSEEIVARQLKTRVYLSATNYIN 470
VG I D+ D+E +YE LL L ER+G+ GL++ + + R
Sbjct: 294 VGPTISLDLDVD-DVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRF--------- 343
Query: 471 LEEPASKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528
P S E C++C D+ + + L C+HE+HA+C+ KWL CPIC+++A
Sbjct: 344 --NPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 399
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 425 DIEDMSYEELLALGERIGNVN-TGLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGS 483
D+E +YE LL L ER+G GL++ + + R NLE + E
Sbjct: 347 DVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYR--------FNLE---NHQSEQTL 395
Query: 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528
C++C D+ + + L C+HE+HA+C+ KWL CPIC+++A
Sbjct: 396 CVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADA 440
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 422 MRLDIEDM---SYEELLALGERIGNVN-TGLSEEIVARQLKTRVYLSATNYINLEEPASK 477
+ LD++D+ +YE LL L ER+G+ GL++ + + R P S
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRF-----------NPDSH 291
Query: 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528
E C++C D+ + + L C+HE+HA+C+ KWL CPIC+++A
Sbjct: 292 QSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 342
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 15/111 (13%)
Query: 422 MRLDIED---MSYEELLALGERIGNVN-TGLSEEIVARQLKTRVYLSATNYINLEEPASK 477
LD+ED +YE LL L ER+G GL++ + + R P++
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRF-----------NPSNH 459
Query: 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528
E C++C D+ + + L C+HE+HA+C+ KWL CPIC+++A
Sbjct: 460 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADA 510
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 422 MRLDIED---MSYEELLALGERIGNVN-TGLSEEIVARQLKTRVYLSATNYINLEEPASK 477
LD+ED +YE LL L ER+G GL++ + + R P +
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRF-----------NPNNH 456
Query: 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528
E C++C D+ + + L C+HE+HA+C+ KWL CPIC+++A
Sbjct: 457 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 425 DIEDMSYEELLALGERIGNVN-TGLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGS 483
D+E +YE LL L ER+G+ GL++ + + R P S E
Sbjct: 331 DVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRF-----------NPDSHQSEQTL 379
Query: 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528
C++C D+ + + L C+HE+H +C+ KWL CPIC+++A
Sbjct: 380 CVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 430 SYEELLALGERIGNVNTGLSEEIVAR-----QLKTRVYLSATNYINLEEPASKDQEPGSC 484
SYEELL L +R+GNV G + + R + K R + + E + D++ C
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEK---C 295
Query: 485 IICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSE 527
IC D E + L C H +H C+ +WL + CPIC+ +
Sbjct: 296 TICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVD 338
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 430 SYEELLALGERIGNVNTGLSEEIVAR-----QLKTRVYLSATNYINLEEPASKDQEPGSC 484
SYEELL L +R+GNV G + + R + K R + E + D++ C
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEK---C 294
Query: 485 IICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSE 527
IC D E + L C H +H C+ +WL + CPIC+ +
Sbjct: 295 TICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVD 337
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLS-ATNYINLEEPASKDQ--------EP 481
+EEL+ L ER+GNVN G S+ + R Y +T++ + + SK
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C IC + E + L C H +H C+ +WL CPIC+
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 912
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLS-ATNYINLEEPASKDQ--------EP 481
+EEL+ L ER+GNVN G S+ + R Y +T++ + + SK
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C IC + E + L C H +H C+ +WL CPIC+
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 956
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLS-ATNYINLEEPASKDQ--------EP 481
+EEL+ L ER+GNVN G S+ + R Y +T++ + + SK
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C IC + E + L C H +H C+ +WL CPIC+
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 948
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLS-ATNYINLEEPASKDQ--------EP 481
+EEL+ L ER+GNVN G S+ + R Y +T++ + + SK
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C IC + E + L C H +H C+ +WL CPIC+
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 943
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLS-ATNYINLEEPASKDQEPG------- 482
+EEL+ L ER+GNVN G S+ + R Y T++ + + K
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 483 -SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C IC + E + L C H +H C+ +WL CPIC+
Sbjct: 935 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 978
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLSATNYIN-LEEPASKDQEPGSCIICQE 489
+EEL+ L ER+GNVN G S+ + R Y + E +++ C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 490 DYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
+ E + L C H +H C+ +WL CPIC+
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 975
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 431 YEELLALGERIGNVNTGLSEEIVARQLKTRVYLS-ATNYINLEEPASKDQEPG------- 482
+EEL+ L ER+GNVN G S+ + R Y T++ + + K
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 483 -SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C IC + E + L C H +H C+ +WL CPIC+
Sbjct: 940 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 983
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531
+C +C +Y + K+ L C HEYH C+ +WL + CPIC+ LA+
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLAS 617
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPIC 524
+C +C ED++ +++G L C H +H +CL KWL ++ VCP+C
Sbjct: 92 TCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMC 133
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPIC 524
+C +C ED++ +++G L C H +H +CL KWL ++ VCP+C
Sbjct: 92 TCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMC 133
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531
+C +C +Y + K+ L C HEYH C+ +WL + CPIC+ L++
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSS 593
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
+C +C +Y + K+ L C HEYH C+ +WL + CPIC+ L
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
+C +C +Y + K+ L C HEYH C+ +WL + CPIC+ L
Sbjct: 702 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
+C +C +Y + K+ L C HEYH C+ +WL + CPIC+ L
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 447 GLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGS--CIICQEDYRDNEKIGTLDCDH 504
G E++ R++ R+ T L A EPG+ C +C + + + + + L C H
Sbjct: 288 GGQEDLFKRRVVRRLASLKTRRCRLSRAAHSLPEPGTETCAVCLDYFCNKQWLRVLPCKH 347
Query: 505 EYHAECLKKWLFIKNVCPICKSEAL 529
E+H +C+ WL ++ CP+CK L
Sbjct: 348 EFHRDCVDPWLMLQQTCPLCKFNVL 372
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 455 RQLKTRVYLSATNYINLEEPASKDQEPG----SCIICQEDYRDNEKIGTLDCDHEYHAEC 510
RQLK A + L D+E G SC +C E Y+ N+ + L C+H +H C
Sbjct: 248 RQLKADAK-KAIGRLQLRTQKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHVFHKTC 306
Query: 511 LKKWLFIKNVCPICKSEAL 529
+ WL CP+CK + L
Sbjct: 307 VDPWLLEHRTCPMCKCDIL 325
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 455 RQLKTRVYLSATNYINLEEPASKDQEPG----SCIICQEDYRDNEKIGTLDCDHEYHAEC 510
RQLK A + L D+E G SC +C E Y+ N+ + L C+H +H C
Sbjct: 245 RQLKADAK-KAIGKLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTC 303
Query: 511 LKKWLFIKNVCPICKSEAL 529
+ WL CP+CK + L
Sbjct: 304 VDPWLLEHRTCPMCKCDIL 322
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 455 RQLKTRVYLSATNYINLEEPASKDQEPG----SCIICQEDYRDNEKIGTLDCDHEYHAEC 510
RQLK A + L D+E G SC +C E Y+ N+ + L C+H +H C
Sbjct: 245 RQLKADAK-KAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTC 303
Query: 511 LKKWLFIKNVCPICKSEAL 529
+ WL CP+CK + L
Sbjct: 304 VDPWLLEHRTCPMCKCDIL 322
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531
QE C IC Y D ++ L C H +H C+ KWL+I CP+CK L +
Sbjct: 348 QEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKS 400
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
C +C ED++ +++G C H +H +CL KWL ++ VCP+C L
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMPVL 123
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 455 RQLKTRVYLSATNYINLEEPASKDQEPG----SCIICQEDYRDNEKIGTLDCDHEYHAEC 510
RQLK A + L D+E G SC +C E Y+ N+ + L C+H +H C
Sbjct: 245 RQLKADAK-KAIGRLQLRTLKQGDREIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTC 303
Query: 511 LKKWLFIKNVCPICKSEAL 529
+ WL CP+CK + L
Sbjct: 304 VDPWLLEHRTCPMCKCDIL 322
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
SC+IC E Y+ NE + L C H +H C+ W+ CP+CK + L
Sbjct: 255 SCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDIL 301
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
SC+IC E Y+ NE + L C H +H C+ W+ CP+CK + L
Sbjct: 255 SCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDIL 301
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
C +C ED++ +++G C H +H +CL KWL ++ VCP+C L
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 123
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526
E G C IC E ++ N+ + L C H +H C+K WL + C IC++
Sbjct: 392 EEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRA 438
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
KD + C IC E Y+ + I L C HE+H C+ WL CP+CK + L
Sbjct: 296 KDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVL 348
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEAL 529
K E C IC E+Y D +K+ L C H YH +C+ WL K CP+CK + +
Sbjct: 233 KGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEAL 529
K E C IC E+Y D +K+ L C H YH +C+ WL K CP+CK + +
Sbjct: 233 KGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 456 QLKTRVYLSATNYINLEEPASKDQEPGS--CIICQEDYRDNEKIGTLDCDHEYHAECLKK 513
QL TR Y + E P S + C IC E++ + +++ + C HE+H C+
Sbjct: 242 QLATRRYQAGCRRARAEWPDSGSSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDP 301
Query: 514 WLFIKNVCPIC 524
WL+ CP+C
Sbjct: 302 WLYQHRTCPLC 312
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 441 IGNVNTGLSEEIVARQLKTRVYLSATNYIN--LEEPASKDQEPGS----CIICQEDYRDN 494
+G + + ++AR ++ R L L++ + D + G C IC ++Y D
Sbjct: 181 VGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDG 240
Query: 495 EKIGTLDCDHEYHAECLKKWLF-IKNVCPICK 525
+K+ L C H YH+ C+ WL + CPICK
Sbjct: 241 DKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
SC+IC E Y+ N+ + L C H +H C+ W+ CPICK + L
Sbjct: 255 SCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILSHGTCPICKCDIL 301
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICK 525
K E C IC ++Y D +K+ L C H YH+ C+ WL + CPICK
Sbjct: 223 KGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529
SC+IC E Y+ N+ + L C H +H C+ W+ CPICK + L
Sbjct: 255 SCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICKCDIL 301
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEAL 529
K E C IC ++Y D +K+ L C H YH +C+ WL K CP+CK + +
Sbjct: 233 KGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 455 RQLKTRVYLSATNY-INLEEPASKDQEPG--SCIICQEDYRDNEKIGTLDCDHEYHAECL 511
RQLK V + + + + K+ EP +C++C + Y+ + + L C H +H C+
Sbjct: 224 RQLKADVRKAIGKLQLRVLQEGDKELEPDEDNCVVCFDIYKPQDVVRILTCKHIFHKACI 283
Query: 512 KKWLFIKNVCPICKSEALAT 531
WL CP+CK + L T
Sbjct: 284 DPWLLAHRTCPMCKCDILQT 303
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525
C +C+EDY EK+ L C+H +H+ C+ WL + + CP+C+
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCR 270
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 447 GLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGS-CIICQEDYRDNEKIGTLDCDHE 505
GL++E + L TR Y E S D E G C +C DY K+ L C HE
Sbjct: 605 GLTKEQID-NLSTRHY----------EHNSIDSELGKICSVCISDYVTGNKLRQLPCMHE 653
Query: 506 YHAECLKKWLFIKNVCPICKSEALAT 531
+H C+ +WL CPIC+ L +
Sbjct: 654 FHIHCIDRWLSENCTCPICRQPVLGS 679
>sp|G3X9R7|RN148_MOUSE RING finger protein 148 OS=Mus musculus GN=Rnf148 PE=2 SV=1
Length = 316
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 455 RQLKTRVYLSATNYINLEEPASKDQE----PGSCIICQEDYRDNEKIGTLDCDHEYHAEC 510
RQLK V A + L D+E SC++C + Y+ + I L C H +H C
Sbjct: 237 RQLKADVK-KAIGQLQLRVLQDGDKELDPNEDSCVVCFDMYKAQDVIRILTCKHFFHKTC 295
Query: 511 LKKWLFIKNVCPICKSEAL 529
+ WL CP+CK + L
Sbjct: 296 IDPWLLAHRTCPMCKCDIL 314
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEAL 529
K E C IC ++Y D +K+ L C H YH +C+ WL K CP+CK + +
Sbjct: 233 KGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 451 EIVARQLKTRVYLSATNYINLEEPASKDQEPG--SCIICQEDYRDNEKIGTLDCDHEYHA 508
++ R++ R+ T L A +PG +C +C + + + + + L C HE+H
Sbjct: 290 DLFKRRVVRRLASLKTRRCRLSRAAQGLPDPGAETCAVCLDYFCNKQWLRVLPCKHEFHR 349
Query: 509 ECLKKWLFIKNVCPICKSEALATK 532
+C+ WL ++ CP+CK L +
Sbjct: 350 DCVDPWLMLQQTCPLCKFNVLGNR 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,871,697
Number of Sequences: 539616
Number of extensions: 10498768
Number of successful extensions: 25288
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 24830
Number of HSP's gapped (non-prelim): 576
length of query: 533
length of database: 191,569,459
effective HSP length: 122
effective length of query: 411
effective length of database: 125,736,307
effective search space: 51677622177
effective search space used: 51677622177
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)